Citrus Sinensis ID: 020125

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Secondary Structure (PSIPRED)
cccHHHHHHHcccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHcHHccccEEEEcccHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccEEEEEEcccccccHHHHHHHHHHHHccccccEEEEEEEEEEEcccccHHHHHHHHHHcccEEEEEEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccHHHHccccccccHHHHccHccccccccccccccEEEEEcccccccHHHHccccccccccccEccccEHHHHHHHHHHHHHHHcccccccccccEEEEEcccccHHHHHHHHccccEEEEEcccHHHHHHcccccEEEEccHcccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHcccccccccccccHHHHccccccccccccccccccHHHEEcccccccHccccccccccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEEEEEEcccccHHHHHHHHHHccccEEEEEEEcccccEEEEEcc
Coil and Loop (DISEMBL)
mrapsllaqclpglapqdrgnhsmsstisekdahlpcpaveilpskgkvsVADIIGFtgsemisskpdgflKCWESSIDLVNVLKHEirdgqlsfrGKRVLELScgyglpgifaclkgagtvhfqdlsaetircttVPNVLANLEQARErqsrqpessltpsrqtlapsvhfyagdweeLPTVLSVVRNDvsevttgmslsfseedfmdgcssqdgsiigqdsssrrsrklsgsraweraseadqgeggydvillteipysVTSLKKLYLLIKKclrppygvvyLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Flexible Loop (DISEMBL)
MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVeilpskgkvSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARErqsrqpessltpsrqtlAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDgsiigqdsssrrsrklsgsraweraseadqgeggydVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAhlikemtdrDIWKFFLK
Low Complexity Region (SEG)
MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDsssrrsrklsgsrAWERASEADQGEGGYDVILLTEIPYSVTSlkklyllikkclRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Disordered region (IsUnstruct)
***********************************PCPAVEILPSKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN*************************SVHFYAGDWEELPTVLSVVRNDVSEVTT***************************************************GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFL*
Disordered Region (DISOPRED)
****SLL*QCL******************EKDAHLPC*******************FTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARE**************QTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Disordered Region (DISEMBL)
MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ*****************QTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQ********************************EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Disordered Region (DISPRO)
****SLLA*CLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA*****************TLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q2KIJ2	373	Histidine protein methylt	yes	no	0.354	0.313	0.362	3e-13
Q55DL2	309	Histidine protein methylt	yes	no	0.239	0.255	0.440	6e-12
O95568	372	Histidine protein methylt	yes	no	0.354	0.314	0.333	2e-11
Q9CZ09	362	Histidine protein methylt	yes	no	0.490	0.447	0.278	1e-10
Q4KM84	362	Histidine protein methylt	yes	no	0.412	0.375	0.306	5e-10
Q9UTQ8	339	Histidine protein methylt	yes	no	0.496	0.483	0.227	9e-05

>sp|Q2KIJ2|MET18_BOVIN Histidine protein methyltransferase 1 homolog OS=Bos taurus GN=METTL18 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 7/124 (5%)

Query: 60  SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 119
           S++IS   +G LK WE + DL+  L       ++ F GK+VL+L CG GL GI A   GA
Sbjct: 155 SDLISGVYEGGLKIWECTFDLLAYL----TKAKVKFAGKKVLDLGCGSGLLGIMALKGGA 210

Query: 120 GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSV---HFYAGD 176
             +HFQD ++  I   T+PNV+AN     E             R T+A  +    F++G+
Sbjct: 211 KEIHFQDYNSVVIDEVTLPNVVANSTLEDEENDVNEPDVKRLRRSTVAQELCKCRFFSGE 270

Query: 177 WEEL 180
           W E 
Sbjct: 271 WSEF 274

Probable histidine methyltransferase.
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q55DL2|MET18_DICDI Histidine protein methyltransferase 1 homolog OS=Dictyostelium discoideum GN=DDB_G0270580 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 60  SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 119
           +++I    +G  K WE SID++N L  E    ++   GK+VLE+ CG+GLPGI+ CL   
Sbjct: 119 TDLIPGVYEGGFKLWECSIDIINYLFEE----KIDLSGKKVLEIGCGHGLPGIY-CLLNG 173

Query: 120 GTVHFQDLSAETIRCTTVPNVLAN 143
             V FQD + E I   T PNVL N
Sbjct: 174 SIVTFQDYNEEVIYNLTQPNVLIN 197

Probable histidine methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O95568|MET18_HUMAN Histidine protein methyltransferase 1 homolog OS=Homo sapiens GN=METTL18 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 6/123 (4%)

Query: 60  SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 119
           S++I+   +G LK WE + DL+          ++ F GK+VL+L CG GL GI A   G+
Sbjct: 155 SDLITGVYEGGLKIWECTFDLLAYF----TKAKVKFAGKKVLDLGCGSGLLGITAFKGGS 210

Query: 120 GTVHFQDLSAETIRCTTVPNVLAN--LEQARERQSRQPESSLTPSRQTLAPSVHFYAGDW 177
             +HFQD ++  I   T+PNV+AN  LE      +          + T      F++G+W
Sbjct: 211 KEIHFQDYNSMVIDEVTLPNVVANSTLEDEENDVNEPDVKRCRKPKVTQLYKCRFFSGEW 270

Query: 178 EEL 180
            E 
Sbjct: 271 SEF 273

Probable histidine methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9CZ09|MET18_MOUSE Histidine protein methyltransferase 1 homolog OS=Mus musculus GN=Mettl18 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 14/176 (7%)

Query: 14  LAPQDRGNHSMSSTISEK---DAHLPCPAVEILPSKGKVSVADIIG---FTGSEMISSKP 67
           + P+D  NH + +T+ E      H     V+ +  K K    +I+     + S++I    
Sbjct: 94  VMPKDV-NHVLENTVLEMLPGPQHANTAVVKTVSLKEKFPGENIVSKSFSSHSDLIPGVY 152

Query: 68  DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 127
           +G LK WE + DL+          ++ F G++VL+L CG GL GI A   GA  VHFQD 
Sbjct: 153 EGGLKIWECTFDLLTYFT----KAKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDY 208

Query: 128 SAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSV---HFYAGDWEEL 180
           +   I   T+PNV+AN+    +   +         +  +   +     ++G+W E 
Sbjct: 209 NGLVIDEVTLPNVVANVPLQDDSNGKNEPDGKRQRKSEVGREICKCRLFSGEWAEF 264

Probable histidine methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q4KM84|MET18_RAT Histidine protein methyltransferase 1 homolog OS=Rattus norvegicus GN=Mettl18 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 24/160 (15%)

Query: 34  HLPCPAVEILPSKGKVSVADIIG---FTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRD 90
           H+    V+ +  K K    +I+     + S++I    +G LK WE + DL+         
Sbjct: 116 HVSTAVVKTISLKEKFPGENIVSQSFSSHSDLIPGVYEGGLKIWECTFDLMTYFTK---- 171

Query: 91  GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL------ 144
            ++ F G++VL+L CG GL GI A   GA  VHFQD +   I   T+PNV+AN+      
Sbjct: 172 AKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDYNGLVIDEVTLPNVVANVPLQGDS 231

Query: 145 ----EQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEEL 180
               E A +RQ R+ E +    +         ++G+W E 
Sbjct: 232 NGINEPAGKRQ-RKSEVAQETCK------CRLFSGEWAEF 264

Probable histidine methyltransferase.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9UTQ8|HPM1_SCHPO Histidine protein methyltransferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1071.05 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 60/224 (26%)

Query: 60  SEMISSKPDGFLKCWESSIDLVNVLKH-EIRDGQLSFRGKRVLELSCGYGLPGIFACLKG 118
           ++++ +  +G  K WE S+DL N +K  ++    L+     VLEL CG  +P I +C + 
Sbjct: 92  NDLVPNVYEGGYKTWECSLDLANEIKKIDVVKNNLT----TVLELGCGSAIP-ILSCFQE 146

Query: 119 ------AGTVHFQDLSAETIRCTTVPNVLANLEQ-ARERQSRQPESSLTPSRQTLAPSVH 171
                   T+ FQD + + +R  T+PN+L N     +E  S +   ++  S         
Sbjct: 147 FYKHRIPCTLVFQDFNVDVLRYVTLPNLLLNWYFCTQEHDSSEKHGTIDVS--------- 197

Query: 172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKL 231
                    P++L    +D++             +F+ GC S++  ++ Q +        
Sbjct: 198 ---------PSLLQEFSDDLARTNIYC-------EFLCGCWSEEMQLLIQRT-------- 233

Query: 232 SGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKK-LYLLIKK 274
                         G+  + ++L +E  YS+ SL+  LY+L+K 
Sbjct: 234 -------------YGDHYFSLVLASETIYSLPSLENFLYMLLKN 264

Required for histidine methylation of RPL3 at 'His-243'.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
224132700	350	predicted protein [Populus trichocarpa]	0.996	0.94	0.806	1e-165
255587050	350	conserved hypothetical protein [Ricinus	0.996	0.94	0.806	1e-164
225433854	350	PREDICTED: histidine protein methyltrans	0.996	0.94	0.794	1e-160
224095700	351	predicted protein [Populus trichocarpa]	0.996	0.937	0.792	1e-157
449468792	350	PREDICTED: histidine protein methyltrans	0.996	0.94	0.797	1e-153
147805782	328	hypothetical protein VITISV_017347 [Viti	0.984	0.990	0.786	1e-148
363807740	330	uncharacterized protein LOC100786056 [Gl	0.948	0.948	0.785	1e-146
356550366	346	PREDICTED: uncharacterized protein LOC10	0.996	0.950	0.780	1e-146
18406207	351	S-adenosyl-L-methionine-dependent methyl	0.990	0.931	0.734	1e-142
16226903	351	At2g43320/T1O24.6 [Arabidopsis thaliana]	0.990	0.931	0.734	1e-142

>gi|224132700|ref|XP_002327859.1| predicted protein [Populus trichocarpa] gi|222837268|gb|EEE75647.1| predicted protein [Populus trichocarpa]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 283/351 (80%), Positives = 311/351 (88%), Gaps = 22/351 (6%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSK-------------- 46
           MRAPSLLAQCLPGLAPQDRG+HSMS+ +SE+D +LP PAVEILPSK              
Sbjct: 1   MRAPSLLAQCLPGLAPQDRGSHSMSA-VSERDVNLPTPAVEILPSKMVHPYKYSGENVEF 59

Query: 47  -------GKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 99
                  G+V+VADIIGFTGSEMISSK DG+LK W+SSIDLVNVLKHEIRDGQLSFRGKR
Sbjct: 60  QGLNVFKGRVNVADIIGFTGSEMISSKTDGYLKSWDSSIDLVNVLKHEIRDGQLSFRGKR 119

Query: 100 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 159
           VLEL C YG+PGIFACLKGA TVHFQD +AETIRCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 120 VLELGCSYGIPGIFACLKGASTVHFQDQNAETIRCTTIPNVLANLEQARDRQSRQPESPL 179

Query: 160 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 219
           TPSRQ LAPSVHFYAG+WEELPTVLSVVR+D  EVTTGMSLSFSEEDFMDGCSSQDGSII
Sbjct: 180 TPSRQMLAPSVHFYAGEWEELPTVLSVVRSDTFEVTTGMSLSFSEEDFMDGCSSQDGSII 239

Query: 220 GQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPP 279
           GQ++SSRRSRKLSGSRAWERASE   GEGGYDVIL+T+IP+SV+SLKKLY LIKKCLRPP
Sbjct: 240 GQETSSRRSRKLSGSRAWERASETGHGEGGYDVILMTDIPHSVSSLKKLYALIKKCLRPP 299

Query: 280 YGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 330
           YGV+YLATK+NYVGF+N AR LRSLVDEEG+FGAHL+KEMTDRD+WKFF+K
Sbjct: 300 YGVLYLATKRNYVGFSNGARQLRSLVDEEGVFGAHLVKEMTDRDVWKFFIK 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587050|ref|XP_002534114.1| conserved hypothetical protein [Ricinus communis] gi|223525826|gb|EEF28265.1| conserved hypothetical protein [Ricinus communis]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/351 (80%), Positives = 306/351 (87%), Gaps = 22/351 (6%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSK-------------- 46
           MRAPSLLAQCLPGL P DR + S+SS +S++D HLP PAVEILPSK              
Sbjct: 1   MRAPSLLAQCLPGLVPHDRASVSISS-VSDRDVHLPSPAVEILPSKMAHPYKYAGENVDL 59

Query: 47  -------GKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 99
                  G+VSVADIIGFTGSEMISSKPDG LK W+SSIDLVNVLKHEIRDGQLSFRGKR
Sbjct: 60  QGLNVFKGRVSVADIIGFTGSEMISSKPDGSLKSWDSSIDLVNVLKHEIRDGQLSFRGKR 119

Query: 100 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 159
           VLEL C YGLPGIFACLKGA TVHFQD+SAE IRCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 120 VLELGCSYGLPGIFACLKGACTVHFQDMSAEMIRCTTIPNVLANLEQARDRQSRQPESPL 179

Query: 160 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 219
           TPSR TL+PSVHFYAGDWEELPTVLS+VRND  E T GMSLSFSEEDFMDGCSSQDGSI+
Sbjct: 180 TPSRHTLSPSVHFYAGDWEELPTVLSIVRNDALEATPGMSLSFSEEDFMDGCSSQDGSIV 239

Query: 220 GQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPP 279
           GQ++SSRRSRKLSGSRAWERA+E D GEGGYDVIL+T+IPYSVTSLKKLY LIKKCLRPP
Sbjct: 240 GQETSSRRSRKLSGSRAWERANETDHGEGGYDVILMTDIPYSVTSLKKLYALIKKCLRPP 299

Query: 280 YGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 330
           YGV+YLATK+NYVGFNN ARHL+SLVDEEGIFGAHL+KEM +RDIWKFFLK
Sbjct: 300 YGVLYLATKRNYVGFNNGARHLKSLVDEEGIFGAHLVKEMAERDIWKFFLK 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433854|ref|XP_002264228.1| PREDICTED: histidine protein methyltransferase 1 homolog [Vitis vinifera] gi|297743766|emb|CBI36649.3| unnamed protein product [Vitis vinifera]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/351 (79%), Positives = 300/351 (85%), Gaps = 22/351 (6%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSK-------------- 46
           MRAPSLLAQCLPGL   D+G+HSMSS ISE+D HL  PAVEILPSK              
Sbjct: 1   MRAPSLLAQCLPGLVAHDKGSHSMSS-ISERDVHLCSPAVEILPSKMAHPYKYAGENVDL 59

Query: 47  -------GKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 99
                  G+VSVADIIGF GSEMISSKP+G LK W+SSIDLVNVLKHEIRDGQLSFRGKR
Sbjct: 60  QGLHVFKGRVSVADIIGFNGSEMISSKPEGSLKSWDSSIDLVNVLKHEIRDGQLSFRGKR 119

Query: 100 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 159
           VLEL C YGLPGIFACLKGA TVHFQDL+AE IRCTT+PNVLANLEQAR++QSRQPES L
Sbjct: 120 VLELGCTYGLPGIFACLKGASTVHFQDLNAEAIRCTTIPNVLANLEQARDKQSRQPESPL 179

Query: 160 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 219
           TPSRQTLAP VHFYAGDWEELPTVLS+VR + SEV TGM+LSFSEEDFMDGCSS DGS+ 
Sbjct: 180 TPSRQTLAPVVHFYAGDWEELPTVLSIVRTEGSEVPTGMNLSFSEEDFMDGCSSHDGSLT 239

Query: 220 GQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPP 279
           G + SSRRSRKLSGSRAWERASE D GEGGYDVIL+TEIPYSVTSLKKLY LIKKCLRPP
Sbjct: 240 GHEFSSRRSRKLSGSRAWERASEMDSGEGGYDVILMTEIPYSVTSLKKLYALIKKCLRPP 299

Query: 280 YGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 330
           YGV+YLATKKNYVGFNN AR LR+LVDEEG FG HL+KEM+DRD+WKFFLK
Sbjct: 300 YGVIYLATKKNYVGFNNGARVLRNLVDEEGFFGVHLVKEMSDRDVWKFFLK 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095700|ref|XP_002310441.1| predicted protein [Populus trichocarpa] gi|222853344|gb|EEE90891.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/352 (79%), Positives = 303/352 (86%), Gaps = 23/352 (6%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSK-------------- 46
           MR PSL AQCLPGL PQDRGN+S+S T+ E+D  LP PAVEILPSK              
Sbjct: 1   MRTPSLFAQCLPGLLPQDRGNNSVS-TVLERDVVLPTPAVEILPSKMVHPYKYAGENVEF 59

Query: 47  -------GKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 99
                  G+VSVADII F GSE ISSK DG+LK W+SSIDLVNVLKHEIRDGQLSFRGKR
Sbjct: 60  QGLNVFKGRVSVADIIAFVGSETISSKTDGYLKSWDSSIDLVNVLKHEIRDGQLSFRGKR 119

Query: 100 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 159
           VLEL C YG+PGIF+CLKGA TVHFQDL+AETIRCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 120 VLELGCSYGIPGIFSCLKGASTVHFQDLNAETIRCTTIPNVLANLEQARDRQSRQPESPL 179

Query: 160 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 219
           TPSRQTLAPSVHFYAG+WEELPTVLSVVRND  EVTTGMSLSFSEEDFMDGCSS DGSII
Sbjct: 180 TPSRQTLAPSVHFYAGEWEELPTVLSVVRNDTFEVTTGMSLSFSEEDFMDGCSSLDGSII 239

Query: 220 GQDS-SSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRP 278
           GQ++ S RRSRKLSGS+AWERASE D GEGGYDVIL+T+IPYS++SLKKLY LIKKCLRP
Sbjct: 240 GQETSSRRRSRKLSGSQAWERASETDHGEGGYDVILMTDIPYSISSLKKLYALIKKCLRP 299

Query: 279 PYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 330
           PYGV+YLATK+NYVGFNN AR LRSLVDEEGIFGAHL+KEMTDRD+WKFF K
Sbjct: 300 PYGVLYLATKRNYVGFNNGARQLRSLVDEEGIFGAHLVKEMTDRDVWKFFFK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468792|ref|XP_004152105.1| PREDICTED: histidine protein methyltransferase 1 homolog [Cucumis sativus] gi|449484635|ref|XP_004156936.1| PREDICTED: histidine protein methyltransferase 1 homolog [Cucumis sativus]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/351 (79%), Positives = 303/351 (86%), Gaps = 22/351 (6%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSK-------------- 46
           MRAPSLL+QCLPGL PQD+G+HS S +ISE+D HLP PAVEILPSK              
Sbjct: 1   MRAPSLLSQCLPGLLPQDKGSHS-SPSISERDVHLPSPAVEILPSKTAHPYKYAGENVDL 59

Query: 47  -------GKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 99
                  G+VSVADII F GSE  SSKP+G LK W+SSIDLVNVLKHEIRDGQLSFRGKR
Sbjct: 60  QGLNVFKGRVSVADIIAFNGSESTSSKPEGHLKSWDSSIDLVNVLKHEIRDGQLSFRGKR 119

Query: 100 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 159
           VLEL C YGLPG+FACLKGA  VHFQDLSAET+RCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 120 VLELGCSYGLPGVFACLKGASIVHFQDLSAETVRCTTIPNVLANLEQARDRQSRQPESPL 179

Query: 160 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSII 219
           TPSR TLAPSVHFYAGDWEELPTVLSVVR D  E  TGMSLSFSEEDFMDGCSSQDGSII
Sbjct: 180 TPSRHTLAPSVHFYAGDWEELPTVLSVVRGDGFEAPTGMSLSFSEEDFMDGCSSQDGSII 239

Query: 220 GQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPP 279
           G +SSSRRSRKLSGSRAWERASEADQGEGGYDVIL+ EIP+S+ SLKKLY LIKKC+RPP
Sbjct: 240 GHESSSRRSRKLSGSRAWERASEADQGEGGYDVILMAEIPFSLNSLKKLYALIKKCVRPP 299

Query: 280 YGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 330
           YGV+YLATKKNYVGFN+ ARHLR+LVDEEG+FGAHL+KEMTDRD+WKFFLK
Sbjct: 300 YGVLYLATKKNYVGFNSGARHLRNLVDEEGVFGAHLVKEMTDRDVWKFFLK 350

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805782|emb|CAN69477.1| hypothetical protein VITISV_017347 [Vitis vinifera]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/333 (78%), Positives = 284/333 (85%), Gaps = 8/333 (2%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSKGKVSVADIIGFTGS 60
           MRAPSLLAQCLPGL   D+G+HSMSS ISE+D HL  PAVEILPSK    +A    + G 
Sbjct: 1   MRAPSLLAQCLPGLVAHDKGSHSMSS-ISERDVHLCSPAVEILPSK----MAHPYKYAGE 55

Query: 61  EMISSKPDGF---LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK 117
            +       F   LK W+SSIDLVNVLKHEIRDGQLSFRGKRVLEL C YGLPGIFACLK
Sbjct: 56  NVDLQGLHVFQGSLKSWDSSIDLVNVLKHEIRDGQLSFRGKRVLELGCTYGLPGIFACLK 115

Query: 118 GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDW 177
           GA TVHFQDL+AE IRCTT+PNVLANLEQAR++QSRQPES LTPSRQTLAP VHFYAGDW
Sbjct: 116 GASTVHFQDLNAEAIRCTTIPNVLANLEQARDKQSRQPESPLTPSRQTLAPVVHFYAGDW 175

Query: 178 EELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAW 237
           EELPTVLS+VR + SEV TGM+LSFSEEDFMDGCSS DGS+ G + SSRRSRKLSGSRAW
Sbjct: 176 EELPTVLSIVRTEGSEVPTGMNLSFSEEDFMDGCSSHDGSLTGHEFSSRRSRKLSGSRAW 235

Query: 238 ERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNA 297
           ERASE D GEGGYDVIL+TEIPYSVTSLKKLY LIKKCLRPPYGV+YLATKKNYVGFNN 
Sbjct: 236 ERASEMDSGEGGYDVILMTEIPYSVTSLKKLYALIKKCLRPPYGVIYLATKKNYVGFNNG 295

Query: 298 ARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 330
           AR LR+LVDEEG FG HL+KEM+DRD+WKFFLK
Sbjct: 296 ARVLRNLVDEEGFFGVHLVKEMSDRDVWKFFLK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807740|ref|NP_001242428.1| uncharacterized protein LOC100786056 [Glycine max] gi|255636338|gb|ACU18508.1| unknown [Glycine max]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/331 (78%), Positives = 285/331 (86%), Gaps = 18/331 (5%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSK-------------- 46
           MRAP+LLAQCLPGL P DRG+ S+SS + EKD HLP PAVEILPSK              
Sbjct: 1   MRAPALLAQCLPGLVPHDRGSLSISS-VPEKDFHLPSPAVEILPSKTVHTEKDNGENIDH 59

Query: 47  --GKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELS 104
             G VSVADI+GF+GSE IS KPDG+LK W SSIDLV+VLKHEIRDGQL+FRGKRVLELS
Sbjct: 60  FKGLVSVADIVGFSGSETISLKPDGYLKSWTSSIDLVSVLKHEIRDGQLTFRGKRVLELS 119

Query: 105 CGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQ 164
           C YGLPGIFACLKGA  VHFQD SAET+RCTT+PNVLANL+QAR+RQSRQPES LTPSRQ
Sbjct: 120 CNYGLPGIFACLKGASVVHFQDQSAETVRCTTIPNVLANLKQARDRQSRQPESPLTPSRQ 179

Query: 165 TLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSS 224
           TLAPSV+FYAGDWEELP+VLS+ ++D  EV  GMSLSFSEEDFMDGCSSQDGSIIG +S 
Sbjct: 180 TLAPSVNFYAGDWEELPSVLSIAKSDGYEVMPGMSLSFSEEDFMDGCSSQDGSIIGHESH 239

Query: 225 SRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVY 284
           SRRSRKLSGSRAWER SEADQGEGGYD+IL+TEIPYSVTSLKKLY LIKKCLRPPYGVV+
Sbjct: 240 SRRSRKLSGSRAWERGSEADQGEGGYDIILMTEIPYSVTSLKKLYALIKKCLRPPYGVVH 299

Query: 285 LA-TKKNYVGFNNAARHLRSLVDEEGIFGAH 314
           LA TK++YVGF+N  R LRSLVDEEGIFGAH
Sbjct: 300 LAPTKRHYVGFSNGVRQLRSLVDEEGIFGAH 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550366|ref|XP_003543558.1| PREDICTED: uncharacterized protein LOC100810964 [Glycine max]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 271/347 (78%), Positives = 297/347 (85%), Gaps = 18/347 (5%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSK-------------- 46
           MRAP+LLAQCLPGL P DRG+ SMSS + EKD HLP PAVEILPSK              
Sbjct: 1   MRAPALLAQCLPGLVPHDRGSLSMSS-VPEKDFHLPSPAVEILPSKAVHTDKDNGENIDH 59

Query: 47  --GKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELS 104
             G +SVADI+GF+GSE IS KPDG+LK W SSIDLV+VLKHEIRDGQL+FRGKRVLELS
Sbjct: 60  FKGLISVADIVGFSGSETISLKPDGYLKYWTSSIDLVSVLKHEIRDGQLTFRGKRVLELS 119

Query: 105 CGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQ 164
           C YGLPGIFACLKGA  VHFQD SAET+RCTT+PNVLANL+QAR+RQSRQPES LTPSRQ
Sbjct: 120 CNYGLPGIFACLKGASVVHFQDQSAETVRCTTIPNVLANLKQARDRQSRQPESPLTPSRQ 179

Query: 165 TLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSS 224
           TLAPSV+FYAGDWEELP+VLS+V++D  EV  GMSLSFSEEDFMDGCSSQDGSIIG +S 
Sbjct: 180 TLAPSVNFYAGDWEELPSVLSIVKSDGYEVMPGMSLSFSEEDFMDGCSSQDGSIIGHESY 239

Query: 225 SRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVY 284
           SRRSRKLS SRAWER SEADQGEGGYDVIL+TEI YSVTSLKKLY LIKKCLRPPYGV+Y
Sbjct: 240 SRRSRKLSRSRAWERGSEADQGEGGYDVILMTEISYSVTSLKKLYALIKKCLRPPYGVLY 299

Query: 285 LA-TKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 330
           LA TK+ YVGF+N  R LRSLVDEEGIFGAHL+K++ DRDIWKFF K
Sbjct: 300 LAPTKRPYVGFSNGVRQLRSLVDEEGIFGAHLVKDLADRDIWKFFHK 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406207|ref|NP_565997.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|145331107|ref|NP_001078045.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|14517476|gb|AAK62628.1| At2g43320/T1O24.6 [Arabidopsis thaliana] gi|20196858|gb|AAB64311.2| expressed protein [Arabidopsis thaliana] gi|20197145|gb|AAM14937.1| expressed protein [Arabidopsis thaliana] gi|22136568|gb|AAM91070.1| At2g43320/T1O24.6 [Arabidopsis thaliana] gi|330255156|gb|AEC10250.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|330255157|gb|AEC10251.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/354 (73%), Positives = 286/354 (80%), Gaps = 27/354 (7%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSK-------------- 46
           MRAPSLLAQCLPGL PQDRG     S +SEKD  LP PAVEI+PSK              
Sbjct: 1   MRAPSLLAQCLPGLLPQDRGG---VSALSEKDLQLPTPAVEIIPSKTVAHHRYSGENLDA 57

Query: 47  -------GKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 99
                  GKVSVADIIG +GSE    K +G LK WESS+ LVNVLK+EIRDGQLSFRGKR
Sbjct: 58  LGLQVFKGKVSVADIIGLSGSETAPLKNEGSLKSWESSVVLVNVLKNEIRDGQLSFRGKR 117

Query: 100 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 159
           VLEL C +G+PGIFACLKGA +VHFQDLSAETIRCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 118 VLELGCNFGVPGIFACLKGASSVHFQDLSAETIRCTTIPNVLANLEQARDRQSRQPESPL 177

Query: 160 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTT-GMSLSFSEEDFMDGCSSQDGSI 218
           TPSRQ ++ SV FYAG+WEEL TVLS++R DV E +   M+LSFSEEDFMDGCSSQDGSI
Sbjct: 178 TPSRQAISASVRFYAGEWEELSTVLSIIRTDVLEPSIPAMNLSFSEEDFMDGCSSQDGSI 237

Query: 219 IGQ-DSSSRRSRKLSGSRAWERASEADQ-GEGGYDVILLTEIPYSVTSLKKLYLLIKKCL 276
            GQ D SSRRSRKLSGSRAWERA+E  Q GE GYDVIL+TEIPYS+TSLKKLY LIKKCL
Sbjct: 238 TGQPDFSSRRSRKLSGSRAWERANETGQEGEYGYDVILMTEIPYSITSLKKLYSLIKKCL 297

Query: 277 RPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 330
           RPPYGV+YLA KK YVGFN+ A+HLR+LVDEE I GAHL+KE TDRDIWKFFLK
Sbjct: 298 RPPYGVMYLAAKKQYVGFNSGAKHLRNLVDEETILGAHLVKETTDRDIWKFFLK 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16226903|gb|AAL16294.1|AF428364_1 At2g43320/T1O24.6 [Arabidopsis thaliana]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/354 (73%), Positives = 285/354 (80%), Gaps = 27/354 (7%)

Query: 1   MRAPSLLAQCLPGLAPQDRGNHSMSSTISEKDAHLPCPAVEILPSK-------------- 46
           MRAPSLLAQCLPGL PQDRG     S +SEKD  LP PAVEI+PSK              
Sbjct: 1   MRAPSLLAQCLPGLLPQDRGG---VSALSEKDLQLPTPAVEIIPSKTVAHHRYSGENLDA 57

Query: 47  -------GKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKR 99
                  GKVSVADIIG +GSE    K +G LK WESS+ LVNVLK+EIRDGQLSFRGKR
Sbjct: 58  LGLQVFKGKVSVADIIGLSGSETAPLKNEGSLKSWESSVVLVNVLKNEIRDGQLSFRGKR 117

Query: 100 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 159
           VLEL C  G+PGIFACLKGA +VHFQDLSAETIRCTT+PNVLANLEQAR+RQSRQPES L
Sbjct: 118 VLELGCNLGVPGIFACLKGASSVHFQDLSAETIRCTTIPNVLANLEQARDRQSRQPESPL 177

Query: 160 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTT-GMSLSFSEEDFMDGCSSQDGSI 218
           TPSRQ ++ SV FYAG+WEEL TVLS++R DV E +   M+LSFSEEDFMDGCSSQDGSI
Sbjct: 178 TPSRQAISASVRFYAGEWEELSTVLSIIRTDVLEPSIPAMNLSFSEEDFMDGCSSQDGSI 237

Query: 219 IGQ-DSSSRRSRKLSGSRAWERASEADQ-GEGGYDVILLTEIPYSVTSLKKLYLLIKKCL 276
            GQ D SSRRSRKLSGSRAWERA+E  Q GE GYDVIL+TEIPYS+TSLKKLY LIKKCL
Sbjct: 238 TGQPDFSSRRSRKLSGSRAWERANETGQEGEYGYDVILMTEIPYSITSLKKLYSLIKKCL 297

Query: 277 RPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 330
           RPPYGV+YLA KK YVGFN+ A+HLR+LVDEE I GAHL+KE TDRDIWKFFLK
Sbjct: 298 RPPYGVMYLAAKKQYVGFNSGAKHLRNLVDEETILGAHLVKETTDRDIWKFFLK 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2041076	351	AT2G43320 "AT2G43320" [Arabido	0.863	0.811	0.708	3.2e-119
TAIR|locus:2129286	290	AT4G14000 "AT4G14000" [Arabido	0.418	0.475	0.473	1.6e-43
ZFIN|ZDB-GENE-090313-192	338	si:dkey-15f17.8 "si:dkey-15f17	0.342	0.334	0.411	2e-17
UNIPROTKB|Q2KIJ2	373	METTL18 "Histidine protein met	0.363	0.321	0.386	9.1e-15
MGI|MGI:1917212	362	Mettl18 "methyltransferase lik	0.481	0.439	0.289	2.4e-14
UNIPROTKB|F1RSC8	365	METTL18 "Uncharacterized prote	0.466	0.421	0.345	5.7e-14
UNIPROTKB|O95568	372	METTL18 "Histidine protein met	0.366	0.325	0.353	6.9e-14
RGD|1306783	362	Mettl18 "methyltransferase lik	0.448	0.408	0.308	2.5e-13
UNIPROTKB|E2R3Y3	365	METTL18 "Uncharacterized prote	0.348	0.315	0.346	6e-13
DICTYBASE|DDB_G0270580	309	DDB_G0270580 "UPF0558 protein"	0.239	0.255	0.440	2.4e-12

TAIR|locus:2041076 AT2G43320 "AT2G43320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1032 (368.3 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
 Identities = 204/288 (70%), Positives = 228/288 (79%)

Query:    46 KGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSC 105
             KGKVSVADIIG +GSE    K +G LK WESS+ LVNVLK+EIRDGQLSFRGKRVLEL C
Sbjct:    64 KGKVSVADIIGLSGSETAPLKNEGSLKSWESSVVLVNVLKNEIRDGQLSFRGKRVLELGC 123

Query:   106 GYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQT 165
              +G+PGIFACLKGA +VHFQDLSAETIRCTT+PNVLANLEQAR+RQSRQPES LTPSRQ 
Sbjct:   124 NFGVPGIFACLKGASSVHFQDLSAETIRCTTIPNVLANLEQARDRQSRQPESPLTPSRQA 183

Query:   166 LAPSVHFYAGDWEELPTVLSVVRNDVSEVTT-GMSLSFSEEDFMDGCSSQDGSIIGQ-DX 223
             ++ SV FYAG+WEEL TVLS++R DV E +   M+LSFSEEDFMDGCSSQDGSI GQ D 
Sbjct:   184 ISASVRFYAGEWEELSTVLSIIRTDVLEPSIPAMNLSFSEEDFMDGCSSQDGSITGQPDF 243

Query:   224 XXXXXXXXXXXXAWERASEADQ-GEGGYDVILLTEIPYSVTSXXXXXXXXXXXXRPPYGV 282
                         AWERA+E  Q GE GYDVIL+TEIPYS+TS            RPPYGV
Sbjct:   244 SSRRSRKLSGSRAWERANETGQEGEYGYDVILMTEIPYSITSLKKLYSLIKKCLRPPYGV 303

Query:   283 VYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK 330
             +YLA KK YVGFN+ A+HLR+LVDEE I GAHL+KE TDRDIWKFFLK
Sbjct:   304 MYLAAKKQYVGFNSGAKHLRNLVDEETILGAHLVKETTDRDIWKFFLK 351

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009414 "response to water deprivation" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2129286 AT4G14000 "AT4G14000" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 71/150 (47%), Positives = 96/150 (64%)

Query:    41 EILPSKGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRV 100
             EI   KG+VS  ++ G   S+++    +G LK WE SIDLV  L+ E + G LSF GKRV
Sbjct:    59 EITLLKGRVSTKEVFGLPNSDLVPGVYEGGLKLWEGSIDLVKALEKESQTGNLSFSGKRV 118

Query:   101 LELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLT 160
             LEL CG+ LPGI+ACLKG+  VHFQD +AE +RC T+PN+ ANL +          SS++
Sbjct:   119 LELGCGHALPGIYACLKGSDAVHFQDFNAEVLRCLTIPNLNANLSEK--------SSSVS 170

Query:   161 PSRQTLAPSVHFYAGDWEELPTVLSVVRND 190
              S +T    V F+AG+W E+  VL +V +D
Sbjct:   171 VS-ET---EVRFFAGEWSEVHQVLPLVNSD 196

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

ZFIN|ZDB-GENE-090313-192 si:dkey-15f17.8 "si:dkey-15f17.8" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
 Identities = 51/124 (41%), Positives = 68/124 (54%)

Query:    60 SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 119
             S++IS   +G LK WE + DL+  + +E   G++ F GKRVL+L CG GL GI A  +GA
Sbjct:   121 SDLISGVYEGGLKIWECTYDLLEYIDNE---GEV-FSGKRVLDLGCGAGLLGILALKRGA 176

Query:   120 GTVHFQDLSAETIRCTTVPNVLANLEQARERQ----SRQP--ESSLTPSRQTLAPSVHFY 173
               V FQD ++  I   T+PNV  N E+  E      S  P    SL  S Q L     F+
Sbjct:   177 IRVDFQDYNSTVIEQLTIPNVFLNCEEDDEDDDDDDSSPPLKRKSLNSS-QELLDHCGFF 235

Query:   174 AGDW 177
             +GDW
Sbjct:   236 SGDW 239

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q2KIJ2 METTL18 "Histidine protein methyltransferase 1 homolog" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 9.1e-15, Sum P(2) = 9.1e-15
 Identities = 51/132 (38%), Positives = 72/132 (54%)

Query:    60 SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 119
             S++IS   +G LK WE + DL+  L       ++ F GK+VL+L CG GL GI A   GA
Sbjct:   155 SDLISGVYEGGLKIWECTFDLLAYLTK----AKVKFAGKKVLDLGCGSGLLGIMALKGGA 210

Query:   120 GTVHFQDLSAETIRCTTVPNVLAN--LEQARERQSRQPESSLTPSRQTLAPSV---HFYA 174
               +HFQD ++  I   T+PNV+AN  LE   E    +P+      R T+A  +    F++
Sbjct:   211 KEIHFQDYNSVVIDEVTLPNVVANSTLED-EENDVNEPDVKRL-RRSTVAQELCKCRFFS 268

Query:   175 GDWEEL-PTVLS 185
             G+W E    VLS
Sbjct:   269 GEWSEFCKLVLS 280

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1917212 Mettl18 "methyltransferase like 18" [Mus musculus (taxid:10090)]

 Score = 172 (65.6 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
 Identities = 50/173 (28%), Positives = 81/173 (46%)

Query:    16 PQDRGNHSMSSTISEK---DAHLPCPAVEILPSKGKVSVADIIG--FTG-SEMISSKPDG 69
             P+D  NH + +T+ E      H     V+ +  K K    +I+   F+  S++I    +G
Sbjct:    96 PKDV-NHVLENTVLEMLPGPQHANTAVVKTVSLKEKFPGENIVSKSFSSHSDLIPGVYEG 154

Query:    70 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 129
              LK WE + DL+          ++ F G++VL+L CG GL GI A   GA  VHFQD + 
Sbjct:   155 GLKIWECTFDLLTYFTK----AKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDYNG 210

Query:   130 ETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSV---HFYAGDWEE 179
               I   T+PNV+AN+    +   +         +  +   +     ++G+W E
Sbjct:   211 LVIDEVTLPNVVANVPLQDDSNGKNEPDGKRQRKSEVGREICKCRLFSGEWAE 263

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|F1RSC8 METTL18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 182 (69.1 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
 Identities = 59/171 (34%), Positives = 87/171 (50%)

Query:    34 HLPCPAVEILPSKGKVSVADIIG--FTG-SEMISSKPDGFLKCWESSIDLVNVLKHEIRD 90
             H+    V+ +  K   S  +II   F+  S++I+   +G LK WE + DL+         
Sbjct:   126 HVNISVVKTILLKDNFSGENIISKSFSSHSDLITGVYEGGLKIWECTFDLLAYFTK---- 181

Query:    91 GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN--LEQAR 148
              ++ F GK+VL+L CG GL GI A   GA  +HFQD ++  I   T+PNV+AN  LE   
Sbjct:   182 AKVKFAGKKVLDLGCGSGLLGIMAFKGGAKEIHFQDYNSVVIDEVTLPNVVANSTLED-E 240

Query:   149 ERQSRQPE-SSLTPSR--QTLAPSVHFYAGDWEEL-PTVLSVVRNDVSEVT 195
             E    +P+      S+  Q L     F++G+W E    VLS  R ++ E T
Sbjct:   241 ENDLNEPDVKRCRKSKVAQELC-KCRFFSGEWSEFCKLVLS--REELFEKT 288

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|O95568 METTL18 "Histidine protein methyltransferase 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
 Identities = 46/130 (35%), Positives = 68/130 (52%)

Query:    60 SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 119
             S++I+   +G LK WE + DL+          ++ F GK+VL+L CG GL GI A   G+
Sbjct:   155 SDLITGVYEGGLKIWECTFDLLAYFTK----AKVKFAGKKVLDLGCGSGLLGITAFKGGS 210

Query:   120 GTVHFQDLSAETIRCTTVPNVLAN--LEQARERQSRQPE-SSLTPSRQTLAPSVHFYAGD 176
               +HFQD ++  I   T+PNV+AN  LE   E    +P+       + T      F++G+
Sbjct:   211 KEIHFQDYNSMVIDEVTLPNVVANSTLED-EENDVNEPDVKRCRKPKVTQLYKCRFFSGE 269

Query:   177 WEEL-PTVLS 185
             W E    VLS
Sbjct:   270 WSEFCKLVLS 279

GO:0005737 "cytoplasm" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

RGD|1306783 Mettl18 "methyltransferase like 18" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
 Identities = 49/159 (30%), Positives = 75/159 (47%)

Query:    34 HLPCPAVEILPSKGKVSVADIIG--FTG-SEMISSKPDGFLKCWESSIDLVNVLKHEIRD 90
             H+    V+ +  K K    +I+   F+  S++I    +G LK WE + DL+         
Sbjct:   116 HVSTAVVKTISLKEKFPGENIVSQSFSSHSDLIPGVYEGGLKIWECTFDLMTYFTK---- 171

Query:    91 GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE-QARE 149
              ++ F G++VL+L CG GL GI A   GA  VHFQD +   I   T+PNV+AN+  Q   
Sbjct:   172 AKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDYNGLVIDEVTLPNVVANVPLQGDS 231

Query:   150 RQSRQPESSLTPSRQTLAPSV--HFYAGDWEEL-PTVLS 185
                 +P        +    +     ++G+W E    VLS
Sbjct:   232 NGINEPAGKRQRKSEVAQETCKCRLFSGEWAEFCKLVLS 270

GO:0005737 "cytoplasm" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

UNIPROTKB|E2R3Y3 METTL18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
 Identities = 43/124 (34%), Positives = 68/124 (54%)

Query:    60 SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 119
             S++I+   +G LK WE + DL+          ++ F GKRVL+L CG GL GI A   GA
Sbjct:   150 SDLITGVYEGGLKIWECTFDLLAYFTK----AKVKFVGKRVLDLGCGSGLLGIVAFKGGA 205

Query:   120 GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQT-LAPSV---HFYAG 175
               +HFQD ++  I   T+PNV+AN     ++ +   E  +   R++ +A  +    F++G
Sbjct:   206 KEIHFQDYNSLVIDEVTLPNVVAN-STLEDKGNDVNEPDVKRCRKSEVAQELSKCRFFSG 264

Query:   176 DWEE 179
             +W E
Sbjct:   265 EWSE 268

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0270580 DDB_G0270580 "UPF0558 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 170 (64.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
 Identities = 37/84 (44%), Positives = 50/84 (59%)

Query:    60 SEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA 119
             +++I    +G  K WE SID++N L  E    ++   GK+VLE+ CG+GLPGI+ CL   
Sbjct:   119 TDLIPGVYEGGFKLWECSIDIINYLFEE----KIDLSGKKVLEIGCGHGLPGIY-CLLNG 173

Query:   120 GTVHFQDLSAETIRCTTVPNVLAN 143
               V FQD + E I   T PNVL N
Sbjct:   174 SIVTFQDYNEEVIYNLTQPNVLIN 197

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG2920	282	consensus Predicted methyltransferase [General fun	100.0
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.94
KOG3201	201	consensus Uncharacterized conserved protein [Funct	99.82
COG3897	218	Predicted methyltransferase [General function pred	99.7
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.57
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.22
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.21
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.21
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.19
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.19
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.18
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.16
PLN02244	340	tocopherol O-methyltransferase	99.06
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.03
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.03
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.02
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.02
PRK14967	223	putative methyltransferase; Provisional	99.0
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.98
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.95
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.94
PRK14968	188	putative methyltransferase; Provisional	98.92
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.9
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.89
PRK11207	197	tellurite resistance protein TehB; Provisional	98.89
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.88
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.88
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.87
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.85
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.84
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.82
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.82
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.81
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.78
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.78
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.77
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.76
PRK12335	287	tellurite resistance protein TehB; Provisional	98.76
COG4123	248	Predicted O-methyltransferase [General function pr	98.76
PLN02336	475	phosphoethanolamine N-methyltransferase	98.76
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.76
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.75
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.75
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.75
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.74
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.74
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.73
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.73
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.72
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.7
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.7
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.7
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.7
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.69
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.67
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.67
COG2890	280	HemK Methylase of polypeptide chain release factor	98.66
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.65
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.65
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.65
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.64
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.63
PLN02490	340	MPBQ/MSBQ methyltransferase	98.62
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.62
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.6
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.57
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.57
PRK08317	241	hypothetical protein; Provisional	98.55
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.55
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.54
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.52
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.5
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.5
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.49
PLN02672	1082	methionine S-methyltransferase	98.48
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.47
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.46
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.45
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.45
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.44
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.43
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.41
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.41
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.41
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.39
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.39
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.38
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.38
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.37
PRK04266	226	fibrillarin; Provisional	98.36
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.33
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.32
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.31
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.29
PLN03075	296	nicotianamine synthase; Provisional	98.29
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.28
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.27
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.27
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.25
PHA03411	279	putative methyltransferase; Provisional	98.24
PRK00811	283	spermidine synthase; Provisional	98.23
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.23
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.22
PLN02336	475	phosphoethanolamine N-methyltransferase	98.22
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.2
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.2
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.2
PRK07402	196	precorrin-6B methylase; Provisional	98.19
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.19
PRK05785	226	hypothetical protein; Provisional	98.19
KOG1271	227	consensus Methyltransferases [General function pre	98.17
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.16
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.15
PRK03612	521	spermidine synthase; Provisional	98.15
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.12
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.12
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.11
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.1
PTZ00146	293	fibrillarin; Provisional	98.08
TIGR00438	188	rrmJ cell division protein FtsJ.	98.08
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.08
PRK04148	134	hypothetical protein; Provisional	98.04
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.03
PRK01581	374	speE spermidine synthase; Validated	98.03
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.02
PRK06922	677	hypothetical protein; Provisional	97.98
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.95
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.93
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.93
KOG4300	252	consensus Predicted methyltransferase [General fun	97.93
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.93
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.91
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.89
PRK04457	262	spermidine synthase; Provisional	97.88
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.88
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.87
PRK06202	232	hypothetical protein; Provisional	97.87
PLN02476	278	O-methyltransferase	97.87
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.86
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.85
KOG2497	262	consensus Predicted methyltransferase [General fun	97.85
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.83
PHA03412	241	putative methyltransferase; Provisional	97.82
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.82
KOG3010	261	consensus Methyltransferase [General function pred	97.78
TIGR03438	301	probable methyltransferase. This model represents	97.76
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.75
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.75
PLN02366	308	spermidine synthase	97.74
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.72
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.71
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.68
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.67
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	97.66
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.62
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.57
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.56
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.54
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.51
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.43
KOG2904	328	consensus Predicted methyltransferase [General fun	97.41
COG4122	219	Predicted O-methyltransferase [General function pr	97.4
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.23
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.23
KOG2899	288	consensus Predicted methyltransferase [General fun	97.22
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.18
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.17
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.13
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.13
PLN02823	336	spermine synthase	97.1
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	96.94
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	96.9
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.87
COG2521	287	Predicted archaeal methyltransferase [General func	96.86
PHA01634	156	hypothetical protein	96.59
PRK00536	262	speE spermidine synthase; Provisional	96.53
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.53
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.48
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.45
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.45
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.41
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.39
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.28
COG2520	341	Predicted methyltransferase [General function pred	96.2
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.12
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.08
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	95.99
KOG2361	264	consensus Predicted methyltransferase [General fun	95.99
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	95.9
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.86
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	95.79
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	95.7
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	95.68
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.65
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.6
PF13679	141	Methyltransf_32: Methyltransferase domain	95.57
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	95.13
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	95.06
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	95.03
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	94.95
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	94.86
COG2265	432	TrmA SAM-dependent methyltransferases related to t	94.8
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	94.57
COG4076	252	Predicted RNA methylase [General function predicti	94.51
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	94.5
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	94.38
COG1041	347	Predicted DNA modification methylase [DNA replicat	94.37
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	94.06
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	93.84
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	93.23
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	93.23
KOG2940	325	consensus Predicted methyltransferase [General fun	93.12
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	92.98
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	92.82
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	92.8
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	92.55
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	92.3
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	92.29
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	92.21
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	92.18
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	92.16
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	92.01
KOG1501	636	consensus Arginine N-methyltransferase [General fu	91.73
PLN02232	160	ubiquinone biosynthesis methyltransferase	91.17
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	91.04
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	90.94
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	90.86
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	90.71
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	90.23
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	88.42
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	88.3
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	88.2
COG4262	508	Predicted spermidine synthase with an N-terminal m	87.35
PRK10742	250	putative methyltransferase; Provisional	87.13
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	87.02
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	86.42
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	85.82
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	83.07
KOG1227	351	consensus Putative methyltransferase [General func	82.93

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=100.00  E-value=9e-36  Score=279.69  Aligned_cols=211  Identities=41%  Similarity=0.607  Sum_probs=169.8

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEE
Q 020125           46 KGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQ  125 (330)
Q Consensus        46 ~~~~s~~~~~g~~~~dl~~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~t  125 (330)
                      ++.++.+++.+.+++|+++++||||+|+|+|+.+|+.++..++ .++..|.||+|||||||+|++||++++.|+..|+++
T Consensus        67 ~~~~~~~~i~~~~~sDl~p~vyEGg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fq  145 (282)
T KOG2920|consen   67 KHLDSIEEIILLNHSDLVPGVYEGGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQ  145 (282)
T ss_pred             hcccccchhhcccccccCCceeecceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeE
Confidence            4677888888999999999999999999999999999999886 556789999999999999999999999998999999


Q ss_pred             eCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhcccccccccccccccccc
Q 020125          126 DLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEE  205 (330)
Q Consensus       126 D~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~  205 (330)
                      |+|.++++..+.||+..|...+.                           .|.+.+.+..++..+               
T Consensus       146 D~na~vl~~~t~pn~~~~~~~~~---------------------------~~~e~~~~~~i~~s~---------------  183 (282)
T KOG2920|consen  146 DFNAEVLRLVTLPNILVNSHAGV---------------------------EEKENHKVDEILNSL---------------  183 (282)
T ss_pred             ecchhheeeecccceecchhhhh---------------------------hhhhcccceeccccc---------------
Confidence            99999999999999999976431                           122222111111100               


Q ss_pred             ccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEE
Q 020125          206 DFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL  285 (330)
Q Consensus       206 d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~l  285 (330)
                                               ++   +|-- +  .....+||+|++|||||++..++.++...+.+|.+++|++|+
T Consensus       184 -------------------------l~---dg~~-~--~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~  232 (282)
T KOG2920|consen  184 -------------------------LS---DGVF-N--HTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV  232 (282)
T ss_pred             -------------------------cc---cchh-h--hccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence                                     00   1200 0  011249999999999999999999976666678779999999


Q ss_pred             EeccccccccccHHHHH-HhhhhcCc---eeEEEEeecCCcceeeeecC
Q 020125          286 ATKKNYVGFNNAARHLR-SLVDEEGI---FGAHLIKEMTDRDIWKFFLK  330 (330)
Q Consensus       286 A~k~~yfGv~gg~~~F~-~~vee~G~---f~~~~~~e~~d~~i~~~~~~  330 (330)
                      |+|++|||||||+.+|. +.|.+...   -+++++.+..+|+||.+.+|
T Consensus       233 aAK~~yFgVgg~i~~f~~~~~~~~d~~~~~~~~~i~~~v~r~i~~~~~~  281 (282)
T KOG2920|consen  233 AAKKLYFGVGGGIEEFNSKLMFDEDVFQISEAKLIRETVKRSILTIEFK  281 (282)
T ss_pred             hhHhhccCcCcchhhhcccccccCCccccccceehhhcCceeEEEEEec
Confidence            99999999999999994 66666554   35667888889999999876

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.94  E-value=5e-27  Score=208.17  Aligned_cols=154  Identities=29%  Similarity=0.410  Sum_probs=97.8

Q ss_pred             CCcccchhHHHHHHHHhhhhhc--CCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125           69 GFLKCWESSIDLVNVLKHEIRD--GQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLE  145 (330)
Q Consensus        69 gg~k~W~ss~~La~~l~~~~~~--~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~  145 (330)
                      .|.++|++++.|++||.++...  ....+++++|||||||+|++||++++. ++.+|++||+++ ++     +|++.|+.
T Consensus        16 ~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-----~~l~~Ni~   89 (173)
T PF10294_consen   16 TGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-----ELLRRNIE   89 (173)
T ss_dssp             -------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-----HHHHHHHH
T ss_pred             CcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-----HHHHHHHH
Confidence            4788999999999999986321  245789999999999999999999998 788999999999 66     44444544


Q ss_pred             HhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 020125          146 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS  225 (330)
Q Consensus       146 ~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~  225 (330)
                      .|..               ....+|.+..+||++....                      +                   
T Consensus        90 ~N~~---------------~~~~~v~v~~L~Wg~~~~~----------------------~-------------------  113 (173)
T PF10294_consen   90 LNGS---------------LLDGRVSVRPLDWGDELDS----------------------D-------------------  113 (173)
T ss_dssp             TT-----------------------EEEE--TTS-HHH----------------------H-------------------
T ss_pred             hccc---------------cccccccCcEEEecCcccc----------------------c-------------------
Confidence            3321               0124678888999883100                      0                   


Q ss_pred             cccccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhh
Q 020125          226 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV  305 (330)
Q Consensus       226 ~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~v  305 (330)
                                        .....+||+||||||+|+++.+++|+++|+++|. ++|.+|++.++|    ....++|++++
T Consensus       114 ------------------~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~~~~~R----~~~~~~F~~~~  170 (173)
T PF10294_consen  114 ------------------LLEPHSFDVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLLAYKRR----RKSEQEFFDRL  170 (173)
T ss_dssp             ------------------HHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEEEEE-S-----TGGCHHHHHH
T ss_pred             ------------------ccccccCCEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEEEeCEe----cHHHHHHHHHh
Confidence                              0123589999999999999999999999999996 667799999887    34678999998


Q ss_pred             hh
Q 020125          306 DE  307 (330)
Q Consensus       306 ee  307 (330)
                      ++
T Consensus       171 ~k  172 (173)
T PF10294_consen  171 KK  172 (173)
T ss_dssp             --
T ss_pred             hh
Confidence            76

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=2.6e-21  Score=168.80  Aligned_cols=170  Identities=26%  Similarity=0.381  Sum_probs=129.9

Q ss_pred             CCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEccc-CCHHHHHHH-HcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125           68 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCG-YGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLANLE  145 (330)
Q Consensus        68 ~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcG-tGL~gi~a~-~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~  145 (330)
                      +|...+|++..+||.++.+++    ..++|++|||||.| +||.|++.| +...+.|.+||.|.+.+     .||+.-..
T Consensus         5 tgnvciwpseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-----rnv~ki~~   75 (201)
T KOG3201|consen    5 TGNVCIWPSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-----RNVEKIRN   75 (201)
T ss_pred             CCcEEecccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-----HHHHHHHh
Confidence            578899999999999999875    57899999999999 799998865 45668999999999987     45553332


Q ss_pred             HhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 020125          146 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS  225 (330)
Q Consensus       146 ~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~  225 (330)
                      .|.       .+.       + .+|.+  ..|..                                              
T Consensus        76 ~n~-------~s~-------~-tsc~v--lrw~~----------------------------------------------   92 (201)
T KOG3201|consen   76 SNM-------ASS-------L-TSCCV--LRWLI----------------------------------------------   92 (201)
T ss_pred             ccc-------ccc-------c-ceehh--hHHHH----------------------------------------------
Confidence            221       011       1 12221  12211                                              


Q ss_pred             cccccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhh
Q 020125          226 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV  305 (330)
Q Consensus       226 ~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~v  305 (330)
                                 |+.  .......+||+|++|||+|..+.+++|+++|+.+|+ |.|.+++.++||    |.+..+|++.+
T Consensus        93 -----------~~a--qsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsPRR----g~sL~kF~de~  154 (201)
T KOG3201|consen   93 -----------WGA--QSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSPRR----GQSLQKFLDEV  154 (201)
T ss_pred             -----------hhh--HHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhC-cccceeEecCcc----cchHHHHHHHH
Confidence                       110  111245689999999999999999999999999997 888999998887    78999999999


Q ss_pred             hhcCceeEEEEeecCCcceeeeec
Q 020125          306 DEEGIFGAHLIKEMTDRDIWKFFL  329 (330)
Q Consensus       306 ee~G~f~~~~~~e~~d~~i~~~~~  329 (330)
                      +..| |.+.+ ++..|..||+++.
T Consensus       155 ~~~g-f~v~l-~enyde~iwqrh~  176 (201)
T KOG3201|consen  155 GTVG-FTVCL-EENYDEAIWQRHG  176 (201)
T ss_pred             Hhce-eEEEe-cccHhHHHHHHHH
Confidence            9999 55555 7888999998764

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.70  E-value=1.7e-17  Score=148.97  Aligned_cols=132  Identities=23%  Similarity=0.323  Sum_probs=101.0

Q ss_pred             CCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           64 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        64 ~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ++.|| .+ .|.+++.||+|+.+++    ..++||+|||+|+|+||++|++++.||+.|+.+|+++..+     .|+.+|
T Consensus        53 pPpfw-a~-~WagG~~lAR~i~~~P----etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-----~ai~lN  121 (218)
T COG3897          53 PPPFW-AF-AWAGGQVLARYIDDHP----ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-----QAIRLN  121 (218)
T ss_pred             CchHH-HH-HHhhhHHHHHHHhcCc----cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-----HHhhcc
Confidence            45676 44 9999999999999986    6899999999999999999999999999999999998764     788888


Q ss_pred             HHHhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCC
Q 020125          144 LEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDS  223 (330)
Q Consensus       144 ~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~  223 (330)
                      ..+|-                   ..+.                              |++.|.           |    
T Consensus       122 a~ang-------------------v~i~------------------------------~~~~d~-----------~----  137 (218)
T COG3897         122 AAANG-------------------VSIL------------------------------FTHADL-----------I----  137 (218)
T ss_pred             hhhcc-------------------ceeE------------------------------Eeeccc-----------c----
Confidence            76541                   0111                              111110           1    


Q ss_pred             cccccccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe-ccccc
Q 020125          224 SSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT-KKNYV  292 (330)
Q Consensus       224 ~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~-k~~yf  292 (330)
                                           -....||+||++|+.|+......|+.++.+|...+ -.+++.. .|.|+
T Consensus       138 ---------------------g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g-~~vlvgdp~R~~l  185 (218)
T COG3897         138 ---------------------GSPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAG-AAVLVGDPGRAYL  185 (218)
T ss_pred             ---------------------CCCcceeEEEeeceecCchHHHHHHHHHHHHHhCC-CEEEEeCCCCCCC
Confidence                                 13578999999999999999999999888776533 3344443 44454

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.57  E-value=4e-14  Score=132.34  Aligned_cols=177  Identities=24%  Similarity=0.258  Sum_probs=119.0

Q ss_pred             CcccchhHHHHHHHHhhhhhc-----CCCCCC--CCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHH
Q 020125           70 FLKCWESSIDLVNVLKHEIRD-----GQLSFR--GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLA  142 (330)
Q Consensus        70 g~k~W~ss~~La~~l~~~~~~-----~~~~~~--~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~  142 (330)
                      .+.+|+++-.++.++.....+     ....|+  .++|||||+|||++|+.+++....+|+.||...-+      .|+..
T Consensus        53 ~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~------~~L~~  126 (248)
T KOG2793|consen   53 SAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV------ENLKF  126 (248)
T ss_pred             eeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhH------HHHHH
Confidence            467999999999999876431     111233  55799999999999999998555599999997754      34444


Q ss_pred             HHHHhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccC
Q 020125          143 NLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQD  222 (330)
Q Consensus       143 N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~  222 (330)
                      |...+....            +++..+|.+..++|++.+...                 |                    
T Consensus       127 ~~~~~~~~l------------~~~g~~v~v~~L~Wg~~~~~~-----------------~--------------------  157 (248)
T KOG2793|consen  127 NRDKNNIAL------------NQLGGSVIVAILVWGNALDVS-----------------F--------------------  157 (248)
T ss_pred             hhhhhhhhh------------hhcCCceeEEEEecCCcccHh-----------------h--------------------
Confidence            433222111            124457888899999964210                 0                    


Q ss_pred             CcccccccccCchhhhhhcccccCCCC-ccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHH
Q 020125          223 SSSRRSRKLSGSRAWERASEADQGEGG-YDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHL  301 (330)
Q Consensus       223 ~~~~~~~~ls~~~~w~~~~~~~~~~~~-fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F  301 (330)
                                             .... +|+|||||++|++++++.|+.+|..+|. .+++++++++.+.=   .--..+
T Consensus       158 -----------------------~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~-~~~~i~l~~~lr~~---~~~~~~  210 (248)
T KOG2793|consen  158 -----------------------RLPNPFDLILASDVVYEEESFEGLVKTLAFLLA-KDGTIFLAYPLRRD---AAWEIE  210 (248)
T ss_pred             -----------------------ccCCcccEEEEeeeeecCCcchhHHHHHHHHHh-cCCeEEEEEecccc---hHHHHH
Confidence                                   0112 9999999999999999999999999885 56699999877630   011222


Q ss_pred             HHhhhh-cCceeEEEEeecCCcceeeee
Q 020125          302 RSLVDE-EGIFGAHLIKEMTDRDIWKFF  328 (330)
Q Consensus       302 ~~~vee-~G~f~~~~~~e~~d~~i~~~~  328 (330)
                      .-+++. .+.|.+......+|++-|..+
T Consensus       211 ~~~~~~~~~~~~v~~~~~~~~~~~~~i~  238 (248)
T KOG2793|consen  211 VLLFKKDLKIFDVVQESFFKDQESFRIG  238 (248)
T ss_pred             HHHhhhhhccceeeeEeccCcceeeeee
Confidence            222222 355666666666666666544

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.22  E-value=7.5e-10  Score=97.57  Aligned_cols=62  Identities=24%  Similarity=0.386  Sum_probs=49.6

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCC-eEEEEeCChHHHHHhhHHHHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~-~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +=.++..|++++...        ++++|||||||+|.+|+.+++.+.. +|+++|+++.+++. +..|+..|
T Consensus        16 ~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~-a~~n~~~n   78 (170)
T PF05175_consen   16 LDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALEL-AKRNAERN   78 (170)
T ss_dssp             HHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHH-HHHHHHHT
T ss_pred             CCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHH-HHHHHHhc
Confidence            334677888888754        6789999999999999999987765 79999999999865 34555544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.21  E-value=2.5e-10  Score=109.72  Aligned_cols=73  Identities=23%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             CCCCC-CCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHH
Q 020125           62 MISSK-PDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNV  140 (330)
Q Consensus        62 l~~~~-y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv  140 (330)
                      +.||. +-+|  .-+......++|.+.      ..+|++|||+|||||+++|+|+++||++|+++|+++.+++. ++.|+
T Consensus       134 idPg~AFGTG--~H~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~-a~~N~  204 (295)
T PF06325_consen  134 IDPGMAFGTG--HHPTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEA-ARENA  204 (295)
T ss_dssp             ESTTSSS-SS--HCHHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHH-HHHHH
T ss_pred             ECCCCcccCC--CCHHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHH-HHHHH
Confidence            34554 3334  568888888888765      46789999999999999999999999999999999998855 45666


Q ss_pred             HHH
Q 020125          141 LAN  143 (330)
Q Consensus       141 ~~N  143 (330)
                      ..|
T Consensus       205 ~~N  207 (295)
T PF06325_consen  205 ELN  207 (295)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            666

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.21  E-value=6.5e-10  Score=107.93  Aligned_cols=152  Identities=21%  Similarity=0.263  Sum_probs=103.7

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      -|.+-+.....+ .++    ..++|++|||+|||+|..++.++..|++.|++.|.++.++..   .|...+..       
T Consensus       104 ew~s~~k~~~l~-~~l----~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q---~~a~~~~~-------  168 (322)
T PRK15068        104 EWRSDWKWDRVL-PHL----SPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQ---FEAVRKLL-------  168 (322)
T ss_pred             eehHHhHHHHHH-Hhh----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHH---HHHHHHhc-------
Confidence            576655433332 222    246899999999999999999998898889999999987632   22221110       


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                  ....+++|..+|.+..+                                                   
T Consensus       169 ------------~~~~~i~~~~~d~e~lp---------------------------------------------------  185 (322)
T PRK15068        169 ------------GNDQRAHLLPLGIEQLP---------------------------------------------------  185 (322)
T ss_pred             ------------CCCCCeEEEeCCHHHCC---------------------------------------------------
Confidence                        00124666555432211                                                   


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe-------------ccccccc-----
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT-------------KKNYVGF-----  294 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~-------------k~~yfGv-----  294 (330)
                                   ....||+|++..++|+......+++-+.++|+ |+|.+++.+             ..+|...     
T Consensus       186 -------------~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~  251 (322)
T PRK15068        186 -------------ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLETLVIDGDENTVLVPGDRYAKMRNVYF  251 (322)
T ss_pred             -------------CcCCcCEEEECChhhccCCHHHHHHHHHHhcC-CCcEEEEEEEEecCCCccccCchhHHhcCcccee
Confidence                         13579999999999999999999999999997 889887652             1122221     


Q ss_pred             cccHHHHHHhhhhcCceeEEEE
Q 020125          295 NNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       295 ~gg~~~F~~~vee~G~f~~~~~  316 (330)
                      -.+...+.+.+++.|+-.++++
T Consensus       252 lps~~~l~~~L~~aGF~~i~~~  273 (322)
T PRK15068        252 IPSVPALKNWLERAGFKDVRIV  273 (322)
T ss_pred             CCCHHHHHHHHHHcCCceEEEE
Confidence            1367889999999997555554

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=3.8e-10  Score=108.29  Aligned_cols=65  Identities=25%  Similarity=0.301  Sum_probs=55.3

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  144 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~  144 (330)
                      .-+....-.++|.+.      ..+|++|||+|||+|+++|++++.||++|+++|+++..++. ++.|+.+|-
T Consensus       145 ~HpTT~lcL~~Le~~------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~a-a~eNa~~N~  209 (300)
T COG2264         145 THPTTSLCLEALEKL------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEA-ARENARLNG  209 (300)
T ss_pred             CChhHHHHHHHHHHh------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHH-HHHHHHHcC
Confidence            456666667777764      34899999999999999999999999999999999999976 578888884

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.19  E-value=1.2e-09  Score=96.63  Aligned_cols=45  Identities=24%  Similarity=0.287  Sum_probs=37.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      .++++|||+|||+|..++.++..+. +|+++|+++++++. +..|+.
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-a~~~~~   62 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKE-LRENAK   62 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHH-HHHHHH
Confidence            4568999999999999999998877 89999999999865 344544

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.18  E-value=4.3e-10  Score=90.71  Aligned_cols=106  Identities=23%  Similarity=0.301  Sum_probs=74.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      +|.+|||||||+|..++.+++ ....+|++.|+++++++.     .+.|....                 ....++++..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~i~~~~   58 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEI-----ARERAAEE-----------------GLSDRITFVQ   58 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHH-----HHHHHHHT-----------------TTTTTEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHH-----HHHHHHhc-----------------CCCCCeEEEE
Confidence            578999999999999999998 234489999999999865     23333211                 1345788888


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|+ ...                                                       |       ....+||+|+
T Consensus        59 ~d~-~~~-------------------------------------------------------~-------~~~~~~D~v~   75 (112)
T PF12847_consen   59 GDA-EFD-------------------------------------------------------P-------DFLEPFDLVI   75 (112)
T ss_dssp             SCC-HGG-------------------------------------------------------T-------TTSSCEEEEE
T ss_pred             Ccc-ccC-------------------------------------------------------c-------ccCCCCCEEE
Confidence            887 210                                                       0       1235699999


Q ss_pred             Eec-ccc--C-cccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          255 LTE-IPY--S-VTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       255 asD-~iY--~-~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      ... +..  - .+....+++.+.+.|+ |+|+++|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~  111 (112)
T PF12847_consen   76 CSGFTLHFLLPLDERRRVLERIRRLLK-PGGRLVINT  111 (112)
T ss_dssp             ECSGSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ECCCccccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence            999 332  1 1345667888888897 899998864

...

>TIGR00452 methyltransferase, putative

Probab=99.16  E-value=1.5e-09  Score=105.19  Aligned_cols=150  Identities=19%  Similarity=0.208  Sum_probs=102.9

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      -|.+.+...+++...     ..++|++|||+|||+|...+.++..|+..|++.|.++.++...  ..++....       
T Consensus       103 e~~s~~~~~~~l~~l-----~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~-------  168 (314)
T TIGR00452       103 EWRSDIKWDRVLPHL-----SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLD-------  168 (314)
T ss_pred             HHHHHHHHHHHHHhc-----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhc-------
Confidence            677666655555432     3578999999999999999888888988999999999887431  11111110       


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                   ...++++..++.+..                                                    
T Consensus       169 -------------~~~~v~~~~~~ie~l----------------------------------------------------  183 (314)
T TIGR00452       169 -------------NDKRAILEPLGIEQL----------------------------------------------------  183 (314)
T ss_pred             -------------cCCCeEEEECCHHHC----------------------------------------------------
Confidence                         012344333321110                                                    


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEec--------------------cccc
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK--------------------KNYV  292 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k--------------------~~yf  292 (330)
                                  .....||+|++..++|+.......++-++++|+ |+|.+++.+-                    ..||
T Consensus       184 ------------p~~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~f  250 (314)
T TIGR00452       184 ------------HELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYF  250 (314)
T ss_pred             ------------CCCCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEEEEecCccccccCchHHHHhcccccc
Confidence                        112479999999999999998888999999997 8898887521                    1122


Q ss_pred             cccccHHHHHHhhhhcCceeEEEE
Q 020125          293 GFNNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       293 Gv~gg~~~F~~~vee~G~f~~~~~  316 (330)
                        ..+.......+++.||-.++++
T Consensus       251 --lpS~~~L~~~L~~aGF~~V~i~  272 (314)
T TIGR00452       251 --IPSVSALKNWLEKVGFENFRIL  272 (314)
T ss_pred             --CCCHHHHHHHHHHCCCeEEEEE
Confidence              2357788889999998766654

Known examples to date are restricted to the proteobacteria.

>PLN02244 tocopherol O-methyltransferase

Probab=99.06  E-value=9.9e-09  Score=100.25  Aligned_cols=133  Identities=21%  Similarity=0.253  Sum_probs=93.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      -++++|||+|||+|..++.++.. |+ +|++.|+++.+++..     ..|....                 .+..++.|.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a-----~~~~~~~-----------------g~~~~v~~~  173 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARA-----NALAAAQ-----------------GLSDKVSFQ  173 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCCCceEEE
Confidence            46789999999999999888875 54 899999999988542     2222110                 122356666


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.+                                                               ...+.||+|
T Consensus       174 ~~D~~~~~---------------------------------------------------------------~~~~~FD~V  190 (340)
T PLN02244        174 VADALNQP---------------------------------------------------------------FEDGQFDLV  190 (340)
T ss_pred             EcCcccCC---------------------------------------------------------------CCCCCccEE
Confidence            66643321                                                               124689999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecc-------------------------ccccccccHHHHHHhhhhc
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------------------------NYVGFNNAARHLRSLVDEE  308 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~-------------------------~yfGv~gg~~~F~~~vee~  308 (330)
                      ++.+++.+......+++-+.+.|+ |+|+++++.-.                         +|+.......++.+++++.
T Consensus       191 ~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~a  269 (340)
T PLN02244        191 WSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESL  269 (340)
T ss_pred             EECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHC
Confidence            999999888888888888888996 89998886311                         1111112577899999999


Q ss_pred             CceeEE
Q 020125          309 GIFGAH  314 (330)
Q Consensus       309 G~f~~~  314 (330)
                      |+-.++
T Consensus       270 Gf~~v~  275 (340)
T PLN02244        270 GLQDIK  275 (340)
T ss_pred             CCCeeE
Confidence            974443

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.03  E-value=1.2e-08  Score=95.28  Aligned_cols=62  Identities=24%  Similarity=0.350  Sum_probs=50.0

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      ..+.+..+.+.|.+.      ..++++|||+|||+|..++.+++.|+.+|+++|+++.+++. ...|+.
T Consensus       102 ~h~tt~~~l~~l~~~------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~-A~~n~~  163 (250)
T PRK00517        102 THPTTRLCLEALEKL------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEA-ARENAE  163 (250)
T ss_pred             CCHHHHHHHHHHHhh------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHH
Confidence            477777777777754      34789999999999999999999998889999999999865 234443

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.03  E-value=8.2e-09  Score=100.41  Aligned_cols=130  Identities=17%  Similarity=0.270  Sum_probs=90.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .+++.+|||+|||+|..++.+++.|+ +|++.|.++++++..     +.+....                 ....++.+.
T Consensus       129 ~~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~A-----r~~~~~~-----------------~~~~~i~~~  185 (322)
T PLN02396        129 PFEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIA-----RLHADMD-----------------PVTSTIEYL  185 (322)
T ss_pred             CCCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHH-----HHHHHhc-----------------CcccceeEE
Confidence            36788999999999999999988876 899999999998552     1121100                 011234443


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .++-++.                                                               ....++||+|
T Consensus       186 ~~dae~l---------------------------------------------------------------~~~~~~FD~V  202 (322)
T PLN02396        186 CTTAEKL---------------------------------------------------------------ADEGRKFDAV  202 (322)
T ss_pred             ecCHHHh---------------------------------------------------------------hhccCCCCEE
Confidence            3331110                                                               0124689999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccc---------------ccc---------ccHHHHHHhhhhcC
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------GFN---------NAARHLRSLVDEEG  309 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yf---------------Gv~---------gg~~~F~~~vee~G  309 (330)
                      ++.+++++....+.+++.+.++|+ |+|.+++.+-.+.+               .+.         -...++..++++.|
T Consensus       203 i~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aG  281 (322)
T PLN02396        203 LSLEVIEHVANPAEFCKSLSALTI-PNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRAS  281 (322)
T ss_pred             EEhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcC
Confidence            999999999999999999999997 89999987532210               011         13577888888888


Q ss_pred             c
Q 020125          310 I  310 (330)
Q Consensus       310 ~  310 (330)
                      +
T Consensus       282 f  282 (322)
T PLN02396        282 V  282 (322)
T ss_pred             C
Confidence            5

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.02  E-value=3.5e-09  Score=90.96  Aligned_cols=108  Identities=24%  Similarity=0.381  Sum_probs=80.6

Q ss_pred             CCCEEEEEcccCCHHHHHHH-Hc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           96 RGKRVLELSCGYGLPGIFAC-LK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~-~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ++++|||+|||+|..++.++ .. ...+|++.|+++++++.+     +.+....                 .+. +++|+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a-----~~~~~~~-----------------~~~-ni~~~   59 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYA-----KKRAKEL-----------------GLD-NIEFI   59 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHH-----HHHHHHT-----------------TST-TEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHh-----hcccccc-----------------ccc-ccceE
Confidence            57899999999999999988 43 245899999999999653     1122110                 122 68888


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|+.+.+.                                                             . -..+||+|
T Consensus        60 ~~d~~~l~~-------------------------------------------------------------~-~~~~~D~I   77 (152)
T PF13847_consen   60 QGDIEDLPQ-------------------------------------------------------------E-LEEKFDII   77 (152)
T ss_dssp             ESBTTCGCG-------------------------------------------------------------C-SSTTEEEE
T ss_pred             Eeehhcccc-------------------------------------------------------------c-cCCCeeEE
Confidence            888655210                                                             0 01689999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecc
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK  289 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~  289 (330)
                      +...++|.......+++-+.++|+ ++|++++....
T Consensus        78 ~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~  112 (152)
T PF13847_consen   78 ISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN  112 (152)
T ss_dssp             EEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             EEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence            999999999999999999999996 88999887655

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.02  E-value=8.2e-10  Score=102.58  Aligned_cols=124  Identities=26%  Similarity=0.373  Sum_probs=90.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      +.|++|||+|||-|+++.-+|+.|+ +|++.|.+++.++-..        ..+       .++.           +   .
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak--------~ha-------~e~g-----------v---~  107 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAK--------LHA-------LESG-----------V---N  107 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHH--------Hhh-------hhcc-----------c---c
Confidence            7899999999999999999999996 8999999998774311        000       0010           0   1


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      .||....     +                 +|.                                    ....++||+|+
T Consensus       108 i~y~~~~-----~-----------------edl------------------------------------~~~~~~FDvV~  129 (243)
T COG2227         108 IDYRQAT-----V-----------------EDL------------------------------------ASAGGQFDVVT  129 (243)
T ss_pred             ccchhhh-----H-----------------HHH------------------------------------HhcCCCccEEE
Confidence            2222211     0                 000                                    01237999999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccc---------------cccccHHHHHHhhhh
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------GFNNAARHLRSLVDE  307 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yf---------------Gv~gg~~~F~~~vee  307 (330)
                      ..|+|-+....+.++..+.++++ |+|++++++-.+++               -+.+|++.+.++++.
T Consensus       130 cmEVlEHv~dp~~~~~~c~~lvk-P~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp  196 (243)
T COG2227         130 CMEVLEHVPDPESFLRACAKLVK-PGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKP  196 (243)
T ss_pred             EhhHHHccCCHHHHHHHHHHHcC-CCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCH
Confidence            99999999999999999999886 89999999755542               257789999888875

>PRK14967 putative methyltransferase; Provisional

Probab=99.00  E-value=1.7e-08  Score=92.48  Aligned_cols=60  Identities=33%  Similarity=0.407  Sum_probs=46.0

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHH
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      .+..|++++...     ...++.+|||+|||+|..++.+++.++.+|+++|+++.+++. ...|+.
T Consensus        21 ds~~l~~~l~~~-----~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~-a~~n~~   80 (223)
T PRK14967         21 DTQLLADALAAE-----GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS-ARLNAL   80 (223)
T ss_pred             cHHHHHHHHHhc-----ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHH
Confidence            445677777643     234678999999999999999988887799999999998865 234443

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.98  E-value=2e-08  Score=95.89  Aligned_cols=64  Identities=22%  Similarity=0.283  Sum_probs=49.3

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ..+......++|.+.      ..++++|||+|||+|..++.+++.|+++|+++|+++.+++. ++.|+..|
T Consensus       142 ~h~tt~l~l~~l~~~------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~-a~~n~~~n  205 (288)
T TIGR00406       142 THPTTSLCLEWLEDL------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES-ARKNAELN  205 (288)
T ss_pred             CCHHHHHHHHHHHhh------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHHHc
Confidence            445555555566543      34789999999999999999999999999999999999865 34555544

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.95  E-value=1.2e-09  Score=102.52  Aligned_cols=112  Identities=21%  Similarity=0.333  Sum_probs=77.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .+.|++|||+|||+||+++-+|+.|| +|+++|..+++++-       +|....        ..|+...  ....++.+.
T Consensus        87 ~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~v-------A~~h~~--------~dP~~~~--~~~y~l~~~  148 (282)
T KOG1270|consen   87 PLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEV-------ANEHKK--------MDPVLEG--AIAYRLEYE  148 (282)
T ss_pred             ccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHH-------HHHhhh--------cCchhcc--ccceeeehh
Confidence            34568999999999999999999997 89999999998854       232210        0111000  011111111


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      ..+-                                                                |  ...++||.|
T Consensus       149 ~~~~----------------------------------------------------------------E--~~~~~fDaV  162 (282)
T KOG1270|consen  149 DTDV----------------------------------------------------------------E--GLTGKFDAV  162 (282)
T ss_pred             hcch----------------------------------------------------------------h--hccccccee
Confidence            0000                                                                0  123569999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN  290 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~  290 (330)
                      +++|++-+....+.+++.+-++|+ |+|..+|++-.+
T Consensus       163 vcsevleHV~dp~~~l~~l~~~lk-P~G~lfittinr  198 (282)
T KOG1270|consen  163 VCSEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINR  198 (282)
T ss_pred             eeHHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhh
Confidence            999999999999999999999997 889999997443

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.94  E-value=1.5e-08  Score=90.58  Aligned_cols=40  Identities=20%  Similarity=0.466  Sum_probs=34.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      +++++|||+|||+|..++.++..+ ..+|++.|.++.+++.
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~   81 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAF   81 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHH
Confidence            468999999999999999977654 4589999999998865

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK14968 putative methyltransferase; Provisional

Probab=98.92  E-value=1.3e-07  Score=82.91  Aligned_cols=53  Identities=30%  Similarity=0.386  Sum_probs=43.2

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -|+-+..|++++..        .++++|||+|||+|..++.++..+ .+|+++|+++++++.
T Consensus         8 p~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~   60 (188)
T PRK14968          8 PAEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVEC   60 (188)
T ss_pred             cchhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHH
Confidence            45666777776642        468899999999999999988875 589999999999855

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.90  E-value=3.4e-08  Score=98.65  Aligned_cols=127  Identities=23%  Similarity=0.288  Sum_probs=90.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCC-Cceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~-~~v~~~  173 (330)
                      .+|++|||+|||+|..++.++..|+.+|++.|.++.+++. ...|+..|-                     +. .++++.
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~-a~~N~~~Ng---------------------l~~~~v~~i  276 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDI-ARQNVELNK---------------------LDLSKAEFV  276 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCCcEEEE
Confidence            4689999999999999999888888899999999999976 456666662                     21 256777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|.-+.   +.                                                  .+      .....+||+|
T Consensus       277 ~~D~~~~---l~--------------------------------------------------~~------~~~~~~fDlV  297 (396)
T PRK15128        277 RDDVFKL---LR--------------------------------------------------TY------RDRGEKFDVI  297 (396)
T ss_pred             EccHHHH---HH--------------------------------------------------HH------HhcCCCCCEE
Confidence            7764321   00                                                  00      0123579999


Q ss_pred             EEeccccCccc----------HHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhc
Q 020125          254 LLTEIPYSVTS----------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE  308 (330)
Q Consensus       254 LasD~iY~~~~----------~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~  308 (330)
                      + .|-.|....          +..|.....++|+ |+|+++.++-.++.    +...|++.+.+.
T Consensus       298 i-lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~----~~~~f~~~v~~a  356 (396)
T PRK15128        298 V-MDPPKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLM----TSDLFQKIIADA  356 (396)
T ss_pred             E-ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcC----CHHHHHHHHHHH
Confidence            8 777776543          4455555566776 89999988766654    468899888753

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.89  E-value=4e-08  Score=92.33  Aligned_cols=134  Identities=23%  Similarity=0.333  Sum_probs=90.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cCC-CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~-~ga-~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      -+|.+|||+|||+|..++.+++ .|. .+|+++|.++.+++..     +.|....                 .+ .++.|
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A-----~~~~~~~-----------------g~-~~v~~  132 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKA-----RANARKA-----------------GY-TNVEF  132 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHH-----HHHHHHc-----------------CC-CCEEE
Confidence            3688999999999998877664 354 3799999999998652     2333211                 01 24556


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|+.+.+                                                               ...+.||+
T Consensus       133 ~~~d~~~l~---------------------------------------------------------------~~~~~fD~  149 (272)
T PRK11873        133 RLGEIEALP---------------------------------------------------------------VADNSVDV  149 (272)
T ss_pred             EEcchhhCC---------------------------------------------------------------CCCCceeE
Confidence            566543321                                                               02358999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEec---c-----------cccccc---ccHHHHHHhhhhcCceeEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK---K-----------NYVGFN---NAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k---~-----------~yfGv~---gg~~~F~~~vee~G~f~~~~  315 (330)
                      |+..-+++.....+.+++.+.++|+ |+|++++..-   .           .+.|..   -...++.+++++.|+-..++
T Consensus       150 Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i  228 (272)
T PRK11873        150 IISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI  228 (272)
T ss_pred             EEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence            9998888877777888888888997 8999887521   0           111111   14678999999999755544

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.89  E-value=2.8e-08  Score=89.70  Aligned_cols=40  Identities=23%  Similarity=0.398  Sum_probs=35.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++++|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~   67 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIAN   67 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            34678999999999999999998876 89999999999854

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.88  E-value=1.5e-07  Score=84.90  Aligned_cols=126  Identities=23%  Similarity=0.270  Sum_probs=83.6

Q ss_pred             CCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           97 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      +.+|||+|||+|..++.++. ....+|++.|.++++++.+ ..|+..|.                     +. ++++..+
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A-~~~~~~~~---------------------l~-~i~~~~~  102 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFL-REVAAELG---------------------LK-NVTVVHG  102 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHH-HHHHHHcC---------------------CC-CEEEEec
Confidence            88999999999999998775 4456999999999998663 33333321                     21 2555544


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |-.+.                                                                ...++||+|++
T Consensus       103 d~~~~----------------------------------------------------------------~~~~~fDlV~~  118 (187)
T PRK00107        103 RAEEF----------------------------------------------------------------GQEEKFDVVTS  118 (187)
T ss_pred             cHhhC----------------------------------------------------------------CCCCCccEEEE
Confidence            42110                                                                01358999998


Q ss_pred             eccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCce-eEEEEeecC
Q 020125          256 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF-GAHLIKEMT  320 (330)
Q Consensus       256 sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f-~~~~~~e~~  320 (330)
                      ...    ..++.+++.+.++|+ |+|++++.....      ....+....+..|+. ...++.+++
T Consensus       119 ~~~----~~~~~~l~~~~~~Lk-pGG~lv~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~  173 (187)
T PRK00107        119 RAV----ASLSDLVELCLPLLK-PGGRFLALKGRD------PEEEIAELPKALGGKVEEVIELTLP  173 (187)
T ss_pred             ccc----cCHHHHHHHHHHhcC-CCeEEEEEeCCC------hHHHHHHHHHhcCceEeeeEEEecC
Confidence            642    356778888888896 889988775443      356677777777753 333444444

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.88  E-value=1.1e-07  Score=86.94  Aligned_cols=158  Identities=21%  Similarity=0.270  Sum_probs=100.5

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCC
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS  158 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~  158 (330)
                      ...+++....    ...++++|||+|||+|..++.+++.++ +|+++|.++.+++.     ...|....           
T Consensus        35 ~~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-----a~~~~~~~-----------   93 (233)
T PRK05134         35 LRLNYIREHA----GGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEV-----ARLHALES-----------   93 (233)
T ss_pred             HHHHHHHHhc----cCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHH-----HHHHHHHc-----------
Confidence            3345666553    245789999999999999998888776 79999999998743     23333211           


Q ss_pred             CCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 020125          159 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE  238 (330)
Q Consensus       159 ~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~  238 (330)
                              ...+.+..+++....                                                         
T Consensus        94 --------~~~~~~~~~~~~~~~---------------------------------------------------------  108 (233)
T PRK05134         94 --------GLKIDYRQTTAEELA---------------------------------------------------------  108 (233)
T ss_pred             --------CCceEEEecCHHHhh---------------------------------------------------------
Confidence                    012233223322110                                                         


Q ss_pred             hhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc--------------cccc----------
Q 020125          239 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN--------------YVGF----------  294 (330)
Q Consensus       239 ~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~--------------yfGv----------  294 (330)
                           ....++||+|+++.++........+++.+.+.|+ |+|.++++.-..              .++.          
T Consensus       109 -----~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (233)
T PRK05134        109 -----AEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKK  182 (233)
T ss_pred             -----hhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhh
Confidence                 0123689999999999988888889999999886 889988864210              0100          


Q ss_pred             cccHHHHHHhhhhcCceeEEEE--eecCCcceeeee
Q 020125          295 NNAARHLRSLVDEEGIFGAHLI--KEMTDRDIWKFF  328 (330)
Q Consensus       295 ~gg~~~F~~~vee~G~f~~~~~--~e~~d~~i~~~~  328 (330)
                      --...++.+++++.|+-..+..  .-.+-...|++.
T Consensus       183 ~~~~~~~~~~l~~~Gf~~v~~~~~~~~~~~~~~~~~  218 (233)
T PRK05134        183 FIKPSELAAWLRQAGLEVQDITGLHYNPLTNRWKLS  218 (233)
T ss_pred             cCCHHHHHHHHHHCCCeEeeeeeEEechhhcceeec
Confidence            0134568888999997444432  122336666653

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.87  E-value=7.1e-08  Score=87.64  Aligned_cols=128  Identities=19%  Similarity=0.209  Sum_probs=87.4

Q ss_pred             CEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecc
Q 020125           98 KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD  176 (330)
Q Consensus        98 k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gd  176 (330)
                      |+|||+|||+|...+.++.. +..+|++.|+++++++.     ...|+...                 .+..++++..+|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~-----a~~~~~~~-----------------gl~~~i~~~~~d   58 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEV-----GRERIRAL-----------------GLQGRIRIFYRD   58 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHhc-----------------CCCcceEEEecc
Confidence            58999999999988887764 33589999999998744     33333210                 123345555444


Q ss_pred             cCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEe
Q 020125          177 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT  256 (330)
Q Consensus       177 W~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILas  256 (330)
                      ....                                                                ...+.||+|++.
T Consensus        59 ~~~~----------------------------------------------------------------~~~~~fD~I~~~   74 (224)
T smart00828       59 SAKD----------------------------------------------------------------PFPDTYDLVFGF   74 (224)
T ss_pred             cccC----------------------------------------------------------------CCCCCCCEeehH
Confidence            3221                                                                012479999999


Q ss_pred             ccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc----cc------ccccHHHHHHhhhhcCcee
Q 020125          257 EIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----VG------FNNAARHLRSLVDEEGIFG  312 (330)
Q Consensus       257 D~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y----fG------v~gg~~~F~~~vee~G~f~  312 (330)
                      ++++.....+.+++.+.++|+ |+|.+++..-...    .+      .-.+..++.+++++.|+-.
T Consensus        75 ~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~  139 (224)
T smart00828       75 EVIHHIKDKMDLFSNISRHLK-DGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRV  139 (224)
T ss_pred             HHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeE
Confidence            999988888999999999997 8999888642110    00      0125678889999998633

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.85  E-value=2.3e-08  Score=77.14  Aligned_cols=95  Identities=24%  Similarity=0.391  Sum_probs=67.7

Q ss_pred             EEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecccCCC
Q 020125          101 LELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEEL  180 (330)
Q Consensus       101 LELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~  180 (330)
                      ||+|||+|.....++..+..+|+++|.++++++.     .+.+..                     ...+.+..+|...+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~-----~~~~~~---------------------~~~~~~~~~d~~~l   54 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQ-----ARKRLK---------------------NEGVSFRQGDAEDL   54 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHH-----HHHHTT---------------------TSTEEEEESBTTSS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHH-----HHhccc---------------------ccCchheeehHHhC
Confidence            8999999999999988866799999999998743     222211                     11233444443332


Q ss_pred             cchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEecccc
Q 020125          181 PTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPY  260 (330)
Q Consensus       181 ~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY  260 (330)
                      +                                                               ...+.||+|++..+++
T Consensus        55 ~---------------------------------------------------------------~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen   55 P---------------------------------------------------------------FPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             S---------------------------------------------------------------S-TT-EEEEEEESHGG
T ss_pred             c---------------------------------------------------------------ccccccccccccccee
Confidence            1                                                               1357899999999999


Q ss_pred             CcccHHHHHHHHHHHcCCCCcEEEE
Q 020125          261 SVTSLKKLYLLIKKCLRPPYGVVYL  285 (330)
Q Consensus       261 ~~~~~~~L~~~i~~~L~~p~Gv~~l  285 (330)
                      .-+....+++-+.+.|+ |+|++++
T Consensus        72 ~~~~~~~~l~e~~rvLk-~gG~l~~   95 (95)
T PF08241_consen   72 HLEDPEAALREIYRVLK-PGGRLVI   95 (95)
T ss_dssp             GSSHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             eccCHHHHHHHHHHHcC-cCeEEeC
Confidence            88889999999999997 8898875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.84  E-value=9.1e-08  Score=85.12  Aligned_cols=120  Identities=17%  Similarity=0.135  Sum_probs=81.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .++.+|||+|||+|..++.+++.+ ..+|++.|.++.+++.+ ..|+..|.                     + .++++.
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a-~~n~~~~~---------------------~-~~i~~~   86 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLI-KENRQRFG---------------------C-GNIDII   86 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHH-HHHHHHhC---------------------C-CCeEEE
Confidence            367899999999999999988754 35899999999988652 33443321                     1 134544


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|...                                                                 ....+||+|
T Consensus        87 ~~d~~~-----------------------------------------------------------------~~~~~~D~v  101 (187)
T PRK08287         87 PGEAPI-----------------------------------------------------------------ELPGKADAI  101 (187)
T ss_pred             ecCchh-----------------------------------------------------------------hcCcCCCEE
Confidence            443100                                                                 012479999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCce
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f  311 (330)
                      ++.-..   ..+..+++.+.+.|+ |+|++++..-.     .+...++.+.+++.|+-
T Consensus       102 ~~~~~~---~~~~~~l~~~~~~Lk-~gG~lv~~~~~-----~~~~~~~~~~l~~~g~~  150 (187)
T PRK08287        102 FIGGSG---GNLTAIIDWSLAHLH-PGGRLVLTFIL-----LENLHSALAHLEKCGVS  150 (187)
T ss_pred             EECCCc---cCHHHHHHHHHHhcC-CCeEEEEEEec-----HhhHHHHHHHHHHCCCC
Confidence            986432   346778888888886 88998774321     23567888999998863

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.82  E-value=8.5e-08  Score=86.39  Aligned_cols=39  Identities=26%  Similarity=0.445  Sum_probs=34.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..+.+|||+|||+|..++.+++.|. +|++.|+++.+++.
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~   67 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIAS   67 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence            4568999999999999999998876 89999999999855

Part of a tellurite-reducing operon tehA and tehB

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.82  E-value=2e-07  Score=89.72  Aligned_cols=155  Identities=21%  Similarity=0.257  Sum_probs=103.4

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      -|.|..--.+ +..++    ..++||+|||+|||.|.-+.-++..||+.|+++|.++..+..   -....++..      
T Consensus        97 EWrSd~KW~r-l~p~l----~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~Q---F~~i~~~lg------  162 (315)
T PF08003_consen   97 EWRSDWKWDR-LLPHL----PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQ---FEAIKHFLG------  162 (315)
T ss_pred             cccccchHHH-HHhhh----CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHH---HHHHHHHhC------
Confidence            4666544333 33332    368999999999999999999999999999999998865422   112222110      


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                   ....+.+...-.                                                       
T Consensus       163 -------------~~~~~~~lplgv-------------------------------------------------------  174 (315)
T PF08003_consen  163 -------------QDPPVFELPLGV-------------------------------------------------------  174 (315)
T ss_pred             -------------CCccEEEcCcch-------------------------------------------------------
Confidence                         001111110000                                                       


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe-------------cccccccc----
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT-------------KKNYVGFN----  295 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~-------------k~~yfGv~----  295 (330)
                               |.....+.||+|++-=|+|+..+--..++.++.+|+ ++|.+++-+             +.+|-+..    
T Consensus       175 ---------E~Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~F  244 (315)
T PF08003_consen  175 ---------EDLPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVLETLVIDGDENTVLVPEDRYAKMRNVWF  244 (315)
T ss_pred             ---------hhccccCCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEEEEeeecCCCceEEccCCcccCCCceEE
Confidence                     001124689999999999999997777788888896 777655432             33443333    


Q ss_pred             -ccHHHHHHhhhhcCceeEEEEeec
Q 020125          296 -NAARHLRSLVDEEGIFGAHLIKEM  319 (330)
Q Consensus       296 -gg~~~F~~~vee~G~f~~~~~~e~  319 (330)
                       .++......++..|+-.++++...
T Consensus       245 iPs~~~L~~wl~r~gF~~v~~v~~~  269 (315)
T PF08003_consen  245 IPSVAALKNWLERAGFKDVRCVDVS  269 (315)
T ss_pred             eCCHHHHHHHHHHcCCceEEEecCc
Confidence             489999999999999888887654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.81  E-value=3.3e-08  Score=92.31  Aligned_cols=105  Identities=27%  Similarity=0.287  Sum_probs=76.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      ++.+|||+|||+|..++.++..|. +|+++|+++++++.+     +.|....                 .+..++++..+
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a-----~~~~~~~-----------------g~~~~v~~~~~  100 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRA-----KQAAEAK-----------------GVSDNMQFIHC  100 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCccceEEEEc
Confidence            567999999999999999998875 899999999998653     2232210                 12234555555


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |..+..                                                              ....+.||+|++
T Consensus       101 d~~~l~--------------------------------------------------------------~~~~~~fD~V~~  118 (255)
T PRK11036        101 AAQDIA--------------------------------------------------------------QHLETPVDLILF  118 (255)
T ss_pred             CHHHHh--------------------------------------------------------------hhcCCCCCEEEe
Confidence            533210                                                              012368999999


Q ss_pred             eccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          256 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       256 sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      ..+++.......+++.+.+.|+ |+|++.+.
T Consensus       119 ~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~  148 (255)
T PRK11036        119 HAVLEWVADPKSVLQTLWSVLR-PGGALSLM  148 (255)
T ss_pred             hhHHHhhCCHHHHHHHHHHHcC-CCeEEEEE
Confidence            9999887777888888888996 88988765

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=4.6e-08  Score=88.15  Aligned_cols=49  Identities=33%  Similarity=0.413  Sum_probs=42.7

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHH
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLA  142 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~  142 (330)
                      ....|+.|+|||||||.+||.++..||++|++.|+++++++.+ +.|...
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~-r~N~~~   90 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIA-RANAEE   90 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHH-HHHHHh
Confidence            4679999999999999999999999999999999999999763 344443

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.78  E-value=3.4e-07  Score=91.84  Aligned_cols=58  Identities=21%  Similarity=0.271  Sum_probs=42.7

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHH
Q 020125           77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      +..|++.+.+..      -++.+|||+|||+|..++.+++. ...+|+++|+++++++. ...|+.
T Consensus       238 TE~LVe~aL~~l------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~-AreNa~  296 (423)
T PRK14966        238 TEHLVEAVLARL------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET-ARKNAA  296 (423)
T ss_pred             HHHHHHHhhhcc------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHH
Confidence            346666665442      14569999999999999987753 45689999999999965 344544

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.77  E-value=2.4e-08  Score=84.77  Aligned_cols=119  Identities=22%  Similarity=0.327  Sum_probs=85.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ..++++|||+|||+|.....++..|. +|+++|+++.+++.           .+                  .. ...+.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~------------------~~-~~~~~   68 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RN------------------VV-FDNFD   68 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TT------------------SE-EEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hh------------------hh-hhhhh
Confidence            45789999999999999988888888 99999999998743           00                  00 00000


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .-+                                                           .       ....++||+|
T Consensus        69 ~~~-----------------------------------------------------------~-------~~~~~~fD~i   82 (161)
T PF13489_consen   69 AQD-----------------------------------------------------------P-------PFPDGSFDLI   82 (161)
T ss_dssp             CHT-----------------------------------------------------------H-------HCHSSSEEEE
T ss_pred             hhh-----------------------------------------------------------h-------hccccchhhH
Confidence            000                                                           0       0134699999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc-----------cccc-------ccHHHHHHhhhhcCc
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-----------VGFN-------NAARHLRSLVDEEGI  310 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y-----------fGv~-------gg~~~F~~~vee~G~  310 (330)
                      ++.++++.......+++.|.++|+ |+|.+++.....+           +...       =...++.+++++.|+
T Consensus        83 ~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~  156 (161)
T PF13489_consen   83 ICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGF  156 (161)
T ss_dssp             EEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTE
T ss_pred             hhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCC
Confidence            999999999999999999999997 8899998864321           1111       145777777777775

...

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.76  E-value=6.4e-08  Score=103.07  Aligned_cols=48  Identities=27%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .+|++|||||||+|..++.++..||++|++.|+++.+++. ...|+..|
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~-a~~N~~~n  584 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEW-AERNFALN  584 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence            4689999999999999999999999899999999999976 45677666

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.76  E-value=8.2e-08  Score=91.48  Aligned_cols=39  Identities=23%  Similarity=0.512  Sum_probs=34.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .++++|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~  157 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLEN  157 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            4567999999999999999998886 89999999999854

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.76  E-value=1.6e-07  Score=88.25  Aligned_cols=143  Identities=17%  Similarity=0.219  Sum_probs=97.4

Q ss_pred             CcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhh
Q 020125           70 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQAR  148 (330)
Q Consensus        70 g~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~  148 (330)
                      +++.=--++.|+.|..        ....++|||||||+|++|++++.. ...+|++.|+++++.+. ...|+.+|-    
T Consensus        26 ~~~~~~DaiLL~~~~~--------~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~-A~~nv~ln~----   92 (248)
T COG4123          26 GFRYGTDAILLAAFAP--------VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEM-AQRNVALNP----   92 (248)
T ss_pred             ccccccHHHHHHhhcc--------cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHH-HHHHHHhCc----
Confidence            4444456788888874        223889999999999999999876 54699999999999876 457777663    


Q ss_pred             hhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccc
Q 020125          149 ERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRS  228 (330)
Q Consensus       149 ~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~  228 (330)
                                       +..++.+...|-.+....                                             
T Consensus        93 -----------------l~~ri~v~~~Di~~~~~~---------------------------------------------  110 (248)
T COG4123          93 -----------------LEERIQVIEADIKEFLKA---------------------------------------------  110 (248)
T ss_pred             -----------------chhceeEehhhHHHhhhc---------------------------------------------
Confidence                             234667666664442210                                             


Q ss_pred             ccccCchhhhhhcccccCCCCccEEEEeccccCc------------------ccHHHHHHHHHHHcCCCCcEEEEEeccc
Q 020125          229 RKLSGSRAWERASEADQGEGGYDVILLTEIPYSV------------------TSLKKLYLLIKKCLRPPYGVVYLATKKN  290 (330)
Q Consensus       229 ~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~------------------~~~~~L~~~i~~~L~~p~Gv~~lA~k~~  290 (330)
                                      ....+||+|++.==-|..                  -.++.+++.-.++|+ ++|.+++..+.-
T Consensus       111 ----------------~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~r~e  173 (248)
T COG4123         111 ----------------LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVHRPE  173 (248)
T ss_pred             ----------------ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEecHH
Confidence                            011245555553222221                  236778888888897 889998887664


Q ss_pred             cccccccHHHHHHhhhhcCc
Q 020125          291 YVGFNNAARHLRSLVDEEGI  310 (330)
Q Consensus       291 yfGv~gg~~~F~~~vee~G~  310 (330)
                            -..+|++++.+.++
T Consensus       174 ------rl~ei~~~l~~~~~  187 (248)
T COG4123         174 ------RLAEIIELLKSYNL  187 (248)
T ss_pred             ------HHHHHHHHHHhcCC
Confidence                  36788888888765

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.76  E-value=3.5e-07  Score=92.70  Aligned_cols=129  Identities=22%  Similarity=0.280  Sum_probs=90.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      -++.+|||+|||+|..++.++.....+|++.|+++++++..     ..|..                   ....++.|..
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A-----~~~~~-------------------~~~~~v~~~~  320 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFA-----LERAI-------------------GRKCSVEFEV  320 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHH-----HHHhh-------------------cCCCceEEEE
Confidence            35789999999999998887764233899999999988542     22221                   0123566666


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|+...+                                                               ...++||+|+
T Consensus       321 ~d~~~~~---------------------------------------------------------------~~~~~fD~I~  337 (475)
T PLN02336        321 ADCTKKT---------------------------------------------------------------YPDNSFDVIY  337 (475)
T ss_pred             cCcccCC---------------------------------------------------------------CCCCCEEEEE
Confidence            6654421                                                               0235899999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc-----------cc---c-ccccHHHHHHhhhhcCce
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-----------YV---G-FNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~-----------yf---G-v~gg~~~F~~~vee~G~f  311 (330)
                      +.++++.....+.+++-+.+.|+ |+|.+++.....           ++   | .-.....+.+++++.|+-
T Consensus       338 s~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~  408 (475)
T PLN02336        338 SRDTILHIQDKPALFRSFFKWLK-PGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFD  408 (475)
T ss_pred             ECCcccccCCHHHHHHHHHHHcC-CCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCe
Confidence            99999999889999999999997 899988863111           11   1 012467778888888863

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.76  E-value=2.6e-08  Score=81.00  Aligned_cols=38  Identities=34%  Similarity=0.487  Sum_probs=34.8

Q ss_pred             CCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           97 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      |.+|||+|||+|...+.+++.++.++++.|+|+..++.
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~   38 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVEL   38 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHH
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHH
Confidence            56899999999999999999887799999999999865

...

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.75  E-value=3.9e-07  Score=82.61  Aligned_cols=105  Identities=26%  Similarity=0.351  Sum_probs=74.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ++.+|||+|||+|..++.++..+  ..+|+++|+++.+++.     .+.|...+                 .+...+.+.
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~-----a~~~~~~~-----------------~~~~~~~~~  108 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAV-----GREKLRDL-----------------GLSGNVEFV  108 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHH-----HHHhhccc-----------------ccccCeEEE
Confidence            67899999999999999888766  3799999999998754     33333210                 011234554


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.+                                                               ...+.||+|
T Consensus       109 ~~d~~~~~---------------------------------------------------------------~~~~~~D~I  125 (239)
T PRK00216        109 QGDAEALP---------------------------------------------------------------FPDNSFDAV  125 (239)
T ss_pred             ecccccCC---------------------------------------------------------------CCCCCccEE
Confidence            44432210                                                               123579999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      +.+-++.+......+++-+.++|+ |+|++++.
T Consensus       126 ~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~  157 (239)
T PRK00216        126 TIAFGLRNVPDIDKALREMYRVLK-PGGRLVIL  157 (239)
T ss_pred             EEecccccCCCHHHHHHHHHHhcc-CCcEEEEE
Confidence            999988888888899999998886 88987764

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.75  E-value=3.7e-07  Score=82.18  Aligned_cols=130  Identities=18%  Similarity=0.234  Sum_probs=84.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      ..++.+|||+|||+|..++.+++. + ..+|++.|.++++++. .+.|+..|-                     +..++.
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~-a~~n~~~~g---------------------~~~~v~   95 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINL-TRRNAEKFG---------------------VLNNIV   95 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------CCCCeE
Confidence            458899999999999999998763 3 3589999999999865 344444331                     112455


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      +..+|..+.   +                                                           ....++||
T Consensus        96 ~~~~d~~~~---l-----------------------------------------------------------~~~~~~~D  113 (198)
T PRK00377         96 LIKGEAPEI---L-----------------------------------------------------------FTINEKFD  113 (198)
T ss_pred             EEEechhhh---H-----------------------------------------------------------hhcCCCCC
Confidence            555543220   0                                                           00124799


Q ss_pred             EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEEEe
Q 020125          252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK  317 (330)
Q Consensus       252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~~~  317 (330)
                      .|+..=   ....+..+++.+.++|+ |+|++++..-..     +...+-...+++.|+ ..++++
T Consensus       114 ~V~~~~---~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~-----~~~~~~~~~l~~~g~-~~~~~~  169 (198)
T PRK00377        114 RIFIGG---GSEKLKEIISASWEIIK-KGGRIVIDAILL-----ETVNNALSALENIGF-NLEITE  169 (198)
T ss_pred             EEEECC---CcccHHHHHHHHHHHcC-CCcEEEEEeecH-----HHHHHHHHHHHHcCC-CeEEEE
Confidence            988731   22345677777777886 889887644322     246777888888885 655443

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.75  E-value=7.5e-08  Score=87.70  Aligned_cols=109  Identities=14%  Similarity=0.177  Sum_probs=79.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      ..+++|||||||+|..|+.++..++.+|++.|.++++++. ...|++.|-                     + .++.++.
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~-a~~Nl~~~~---------------------~-~~v~~~~  108 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQ-LIKNLATLK---------------------A-GNARVVN  108 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------C-CcEEEEE
Confidence            4678999999999999997766678899999999999865 345555441                     1 1466666


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|+.+.                                                        +.      .....||+|+
T Consensus       109 ~D~~~~--------------------------------------------------------l~------~~~~~fDlV~  126 (199)
T PRK10909        109 TNALSF--------------------------------------------------------LA------QPGTPHNVVF  126 (199)
T ss_pred             chHHHH--------------------------------------------------------Hh------hcCCCceEEE
Confidence            664220                                                        00      0124699886


Q ss_pred             EeccccCcccHHHHHHHHHHH--cCCCCcEEEEEeccc
Q 020125          255 LTEIPYSVTSLKKLYLLIKKC--LRPPYGVVYLATKKN  290 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~--L~~p~Gv~~lA~k~~  290 (330)
                       .|-.|.....+.+++.|...  | .+++++|+...+.
T Consensus       127 -~DPPy~~g~~~~~l~~l~~~~~l-~~~~iv~ve~~~~  162 (199)
T PRK10909        127 -VDPPFRKGLLEETINLLEDNGWL-ADEALIYVESEVE  162 (199)
T ss_pred             -ECCCCCCChHHHHHHHHHHCCCc-CCCcEEEEEecCC
Confidence             78899998899998888863  5 4899999986553

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.74  E-value=1.4e-07  Score=89.89  Aligned_cols=115  Identities=25%  Similarity=0.389  Sum_probs=74.7

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  156 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~  156 (330)
                      ....+++.+..    ..-+|.+|||+|||.|-+++.++.. |+ +|++..++++-.+.     ++..+..          
T Consensus        48 ~~k~~~~~~~~----~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~-----a~~~~~~----------  107 (273)
T PF02353_consen   48 ERKLDLLCEKL----GLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEY-----ARERIRE----------  107 (273)
T ss_dssp             HHHHHHHHTTT----T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHH-----HHHHHHC----------
T ss_pred             HHHHHHHHHHh----CCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHH-----HHHHHHh----------
Confidence            44444554442    4568999999999999999999987 87 89999999986643     2222210          


Q ss_pred             CCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 020125          157 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA  236 (330)
Q Consensus       157 s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~  236 (330)
                             ..+..+|.+...||.+.                                                        
T Consensus       108 -------~gl~~~v~v~~~D~~~~--------------------------------------------------------  124 (273)
T PF02353_consen  108 -------AGLEDRVEVRLQDYRDL--------------------------------------------------------  124 (273)
T ss_dssp             -------STSSSTEEEEES-GGG---------------------------------------------------------
T ss_pred             -------cCCCCceEEEEeecccc--------------------------------------------------------
Confidence                   02334555555554321                                                        


Q ss_pred             hhhhcccccCCCCccEEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          237 WERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       237 w~~~~~~~~~~~~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                                ..+||-|++-+.+-..  ..++.+++.+.++|+ |+|++++-
T Consensus       125 ----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~lq  165 (273)
T PF02353_consen  125 ----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVLQ  165 (273)
T ss_dssp             ------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEEE
T ss_pred             ----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEEE
Confidence                      2399999999999887  789999999999996 89998863

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.74  E-value=1.5e-07  Score=93.50  Aligned_cols=46  Identities=28%  Similarity=0.407  Sum_probs=38.2

Q ss_pred             CCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           97 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +.+|||||||+|.+|+.+++.+ ..+|+++|.++.+++. ...|+..|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~-A~~N~~~n  275 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVAS-SRLNVETN  275 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            4699999999999999988764 4589999999999976 45666666

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.73  E-value=3.2e-07  Score=87.37  Aligned_cols=60  Identities=22%  Similarity=0.249  Sum_probs=45.1

Q ss_pred             CEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecc
Q 020125           98 KRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD  176 (330)
Q Consensus        98 k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gd  176 (330)
                      ++|||+|||+|..++.++.... .+|+++|+++++++. ...|+..|.                     +..+++|..+|
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~-a~~n~~~~~---------------------~~~~v~~~~~d  173 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAV-AEENAEKNQ---------------------LEHRVEFIQSN  173 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEEEECc
Confidence            6999999999999999887543 589999999999865 345554431                     22357888888


Q ss_pred             cCC
Q 020125          177 WEE  179 (330)
Q Consensus       177 W~~  179 (330)
                      |.+
T Consensus       174 ~~~  176 (284)
T TIGR00536       174 LFE  176 (284)
T ss_pred             hhc
Confidence            754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.73  E-value=5.3e-07  Score=82.83  Aligned_cols=57  Identities=21%  Similarity=0.235  Sum_probs=43.6

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      -++.+..+.+.+.+...     -.+++|||+|||+|..++.++.. ...+|+++|+++.+++.
T Consensus        69 p~~~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~  126 (251)
T TIGR03534        69 PRPDTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAV  126 (251)
T ss_pred             CCCChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            44566677777765531     24579999999999999998875 34589999999999865

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.72  E-value=2e-07  Score=86.52  Aligned_cols=99  Identities=25%  Similarity=0.324  Sum_probs=71.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      .+.+|||+|||+|..+..++..|. +|+++|+++.+++.+     ..|.                       ..+.+..+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a-----~~~~-----------------------~~~~~~~~   92 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQA-----RQKD-----------------------AADHYLAG   92 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCCEEEc
Confidence            568999999999998888777775 899999999988542     1110                       01233344


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |.+..+                                                               .....||+|++
T Consensus        93 d~~~~~---------------------------------------------------------------~~~~~fD~V~s  109 (251)
T PRK10258         93 DIESLP---------------------------------------------------------------LATATFDLAWS  109 (251)
T ss_pred             CcccCc---------------------------------------------------------------CCCCcEEEEEE
Confidence            433211                                                               12357999999


Q ss_pred             eccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          256 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       256 sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +-++........++.-+.+.|+ |+|++++++
T Consensus       110 ~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~  140 (251)
T PRK10258        110 NLAVQWCGNLSTALRELYRVVR-PGGVVAFTT  140 (251)
T ss_pred             CchhhhcCCHHHHHHHHHHHcC-CCeEEEEEe
Confidence            9888777777888888888886 889998874

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.70  E-value=6.2e-07  Score=87.10  Aligned_cols=39  Identities=33%  Similarity=0.462  Sum_probs=35.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .++.+|||+|||+|..++.++..|. +|+++|+++.+++.
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~  181 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAE  181 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            4688999999999999999998876 89999999999965

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.70  E-value=8.8e-07  Score=82.81  Aligned_cols=60  Identities=23%  Similarity=0.237  Sum_probs=43.1

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHH
Q 020125           77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      +..|.+++....    ...++.+|||+|||+|..++.++... ..+|+++|+++.+++. ...|+.
T Consensus        93 te~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~-a~~n~~  153 (275)
T PRK09328         93 TEELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAV-ARRNAK  153 (275)
T ss_pred             cHHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHH
Confidence            345666555332    23467899999999999999988654 4689999999999865 234443

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.70  E-value=7.4e-07  Score=83.99  Aligned_cols=108  Identities=25%  Similarity=0.335  Sum_probs=74.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .++.+|||+|||+|...+.++.. +. .+|++.|++++|++... .+.  +....                 ....++++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~-~r~--~~~~~-----------------~~~~~i~~  131 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAA-SRQ--ELKAK-----------------SCYKNIEW  131 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHh--hhhhh-----------------ccCCCeEE
Confidence            46789999999999988877754 32 48999999999996531 111  10000                 01124555


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|-.+.+                                                               ...+.||+
T Consensus       132 ~~~d~~~lp---------------------------------------------------------------~~~~sfD~  148 (261)
T PLN02233        132 IEGDATDLP---------------------------------------------------------------FDDCYFDA  148 (261)
T ss_pred             EEcccccCC---------------------------------------------------------------CCCCCEeE
Confidence            555533211                                                               12457999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      |+++.++-+......+++-+.+.|+ |+|.+.+.
T Consensus       149 V~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~  181 (261)
T PLN02233        149 ITMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSIL  181 (261)
T ss_pred             EEEecccccCCCHHHHHHHHHHHcC-cCcEEEEE
Confidence            9999999888888888888888996 88988775

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.70  E-value=5.2e-07  Score=92.84  Aligned_cols=47  Identities=23%  Similarity=0.224  Sum_probs=36.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ++.+|||+|||+|..++.++. ....+|+++|+++.+++. +..|+..|
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~-A~~N~~~~  185 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEV-AKSNAIKY  185 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHH-HHHHHHHc
Confidence            456899999999999998765 344589999999999965 34555433

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.69  E-value=3.5e-07  Score=82.91  Aligned_cols=128  Identities=23%  Similarity=0.342  Sum_probs=87.9

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      .|.......+|+.+.........++.+|||+|||+|..+..+++.++ +|+++|.++.+++.     .+.|+...     
T Consensus        22 ~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-----a~~~~~~~-----   90 (224)
T TIGR01983        22 LHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEV-----AKLHAKKD-----   90 (224)
T ss_pred             HHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHH-----HHHHHHHc-----
Confidence            45556666778877664322245789999999999999988888776 69999999998743     33343211     


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                  .. .++++..+|..+..                                                   
T Consensus        91 ------------~~-~~~~~~~~d~~~~~---------------------------------------------------  106 (224)
T TIGR01983        91 ------------PL-LKIEYRCTSVEDLA---------------------------------------------------  106 (224)
T ss_pred             ------------CC-CceEEEeCCHHHhh---------------------------------------------------
Confidence                        00 02343333321100                                                   


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                                 ....++||+|++..+++.......+++.+.+.|+ ++|++++..
T Consensus       107 -----------~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~  149 (224)
T TIGR01983       107 -----------EKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLK-PGGILFFST  149 (224)
T ss_pred             -----------cCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEe
Confidence                       0013689999999999999999999999998886 889888764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.67  E-value=3.3e-07  Score=86.44  Aligned_cols=131  Identities=17%  Similarity=0.165  Sum_probs=85.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .-++.+|||+|||+|..+..++.....+|++.|+++.+++..     ..+..                    ...++.|.
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a-----~~~~~--------------------~~~~i~~~  104 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIA-----KLRNS--------------------DKNKIEFE  104 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHH-----HHHcC--------------------cCCceEEE
Confidence            346789999999999988877653223899999999988542     11110                    01245555


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.+                                                               ...+.||+|
T Consensus       105 ~~D~~~~~---------------------------------------------------------------~~~~~FD~V  121 (263)
T PTZ00098        105 ANDILKKD---------------------------------------------------------------FPENTFDMI  121 (263)
T ss_pred             ECCcccCC---------------------------------------------------------------CCCCCeEEE
Confidence            54432210                                                               124689999


Q ss_pred             EEeccccCcc--cHHHHHHHHHHHcCCCCcEEEEEeccc-----------------cccccccHHHHHHhhhhcCceeEE
Q 020125          254 LLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKN-----------------YVGFNNAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       254 LasD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~k~~-----------------yfGv~gg~~~F~~~vee~G~f~~~  314 (330)
                      ++.++++...  ....+++-+.++|+ |+|++++..-..                 .+. ......+.+++++.|+-.++
T Consensus       122 ~s~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aGF~~v~  199 (263)
T PTZ00098        122 YSRDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYCADKIENWDEEFKAYIKKRKYT-LIPIQEYGDLIKSCNFQNVV  199 (263)
T ss_pred             EEhhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEeccccccCcHHHHHHHHHhcCCC-CCCHHHHHHHHHHCCCCeee
Confidence            9999887643  56778888888896 899988763100                 000 12557888888888864333

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.67  E-value=4.5e-07  Score=81.93  Aligned_cols=102  Identities=24%  Similarity=0.342  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .++++|||+|||+|..+..++..+. .+|+++|.++.+++.+     ..+                      ..+++.+.
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~-----~~~----------------------~~~~~~~~   85 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA-----KTK----------------------LSENVQFI   85 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH-----HHh----------------------cCCCCeEE
Confidence            5678999999999998888877653 4689999999887431     111                      11134444


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|....+                                                               ...++||+|
T Consensus        86 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v  102 (240)
T TIGR02072        86 CGDAEKLP---------------------------------------------------------------LEDSSFDLI  102 (240)
T ss_pred             ecchhhCC---------------------------------------------------------------CCCCceeEE
Confidence            44432210                                                               123579999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +++.++........+++-+.+.|+ |+|.++++.
T Consensus       103 i~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~  135 (240)
T TIGR02072       103 VSNLALQWCDDLSQALSELARVLK-PGGLLAFST  135 (240)
T ss_pred             EEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEe
Confidence            999999988888888999999896 899988864

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=9.8e-07  Score=84.33  Aligned_cols=44  Identities=27%  Similarity=0.362  Sum_probs=37.7

Q ss_pred             EEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHH
Q 020125           99 RVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        99 ~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +|||+|||||.+++.+++.+. .+|+++|+|+++++. .+.|...|
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~-A~~Na~~~  157 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALAL-ARENAERN  157 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHH-HHHHHHHc
Confidence            899999999999999987654 499999999999976 46676666

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.65  E-value=3.1e-07  Score=83.81  Aligned_cols=105  Identities=21%  Similarity=0.251  Sum_probs=72.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      -++++|||+|||+|..++.++.. + ..+|++.|+++++++.+ ..|+..+                     .+ .++.+
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a-~~~~~~~---------------------~~-~~v~~  100 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG-RQKVKDA---------------------GL-HNVEL  100 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH-HHHHHhc---------------------CC-CceEE
Confidence            35889999999999998887753 3 35899999999998552 2332211                     01 24555


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|....+                                                               ...++||+
T Consensus       101 ~~~d~~~~~---------------------------------------------------------------~~~~~fD~  117 (231)
T TIGR02752       101 VHGNAMELP---------------------------------------------------------------FDDNSFDY  117 (231)
T ss_pred             EEechhcCC---------------------------------------------------------------CCCCCccE
Confidence            555432210                                                               12358999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      |+++.++-..+....+++.+.+.|+ |+|++.+.
T Consensus       118 V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~  150 (231)
T TIGR02752       118 VTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCL  150 (231)
T ss_pred             EEEecccccCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence            9999887666777778887888886 88988764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.65  E-value=5.1e-07  Score=86.24  Aligned_cols=47  Identities=23%  Similarity=0.275  Sum_probs=37.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .+++|||+|||+|..++.++... ..+|+++|+++.+++. ++.|+..|
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~-A~~n~~~~  168 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAV-AEINIERH  168 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            35799999999999999988753 3489999999999966 34555544

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.65  E-value=1.1e-06  Score=71.45  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      -++++|||+|||+|..++.++.. +..+|++.|+++.+++.
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~   58 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRL   58 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHH
Confidence            35789999999999999988764 34689999999998855

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.64  E-value=2.6e-07  Score=83.73  Aligned_cols=125  Identities=19%  Similarity=0.154  Sum_probs=80.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .+.+|||+|||+|..++.++.. ...+|++.|+++++++.+     ..|...+                 .+ .++++..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a-----~~~~~~~-----------------~~-~~v~~~~   96 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKA-----LKKIEEE-----------------GL-TNLRLLC   96 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHH-----HHHHHHc-----------------CC-CCEEEEe
Confidence            5679999999999999887654 335899999999998653     2333211                 11 3467777


Q ss_pred             ccc-CCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          175 GDW-EELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       175 gdW-~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      +|+ +..+.                                                             ....+.||+|
T Consensus        97 ~d~~~~l~~-------------------------------------------------------------~~~~~~~D~V  115 (202)
T PRK00121         97 GDAVEVLLD-------------------------------------------------------------MFPDGSLDRI  115 (202)
T ss_pred             cCHHHHHHH-------------------------------------------------------------HcCccccceE
Confidence            775 32110                                                             0123467888


Q ss_pred             EEeccc-cCc-------ccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCc
Q 020125          254 LLTEIP-YSV-------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  310 (330)
Q Consensus       254 LasD~i-Y~~-------~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~  310 (330)
                      +..-.. |..       ...+.+++-+.+.|+ |+|++++++....     -....++.+++.|+
T Consensus       116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~~~-----~~~~~~~~~~~~g~  174 (202)
T PRK00121        116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATDWEG-----YAEYMLEVLSAEGG  174 (202)
T ss_pred             EEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcCCHH-----HHHHHHHHHHhCcc
Confidence            764211 111       024678888888896 8999998864432     35677788888885

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.63  E-value=4.5e-07  Score=81.75  Aligned_cols=49  Identities=20%  Similarity=0.266  Sum_probs=42.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .+.|++||||+||+|..|+.|+..||++|++.|.++.+++. ++.|+..|
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~-~~~N~~~~   95 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQT-LKENLALL   95 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence            36799999999999999999999999999999999999865 34555554

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.62  E-value=1.9e-06  Score=84.53  Aligned_cols=130  Identities=15%  Similarity=0.099  Sum_probs=87.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .+.+|||+|||+|..++.+++ .+..+|+++|.++++++..     +.|..                     ..++++..
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A-----~~k~~---------------------~~~i~~i~  166 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-----KQKEP---------------------LKECKIIE  166 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhhh---------------------ccCCeEEe
Confidence            577999999999998877665 3446899999999988542     11211                     01234444


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+.+                                                               ...+.||+|+
T Consensus       167 gD~e~lp---------------------------------------------------------------~~~~sFDvVI  183 (340)
T PLN02490        167 GDAEDLP---------------------------------------------------------------FPTDYADRYV  183 (340)
T ss_pred             ccHHhCC---------------------------------------------------------------CCCCceeEEE
Confidence            4432210                                                               1235799999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEecc-------cccc----ccccHHHHHHhhhhcCceeEEE
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------NYVG----FNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~-------~yfG----v~gg~~~F~~~vee~G~f~~~~  315 (330)
                      ++.++..-...+.+++-+.+.|+ |+|++++....       +++.    ......++.+++++.|+-.+++
T Consensus       184 s~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i  254 (340)
T PLN02490        184 SAGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL  254 (340)
T ss_pred             EcChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence            99998877777778888888897 88987765321       1111    0135788899999999755544

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.62  E-value=6.5e-07  Score=83.27  Aligned_cols=40  Identities=20%  Similarity=0.205  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|.....++.. +..+|+++|+++.+++.
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~   70 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAE   70 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            46789999999999998887754 34589999999998854

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.60  E-value=1.5e-07  Score=91.55  Aligned_cols=51  Identities=29%  Similarity=0.417  Sum_probs=42.2

Q ss_pred             CCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           91 GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        91 ~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ++..|+||.|||+|||||++++++|++||++|++.|.+.-+ +. ....+..|
T Consensus        55 n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~-a~~iv~~N  105 (346)
T KOG1499|consen   55 NKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DF-ARKIVKDN  105 (346)
T ss_pred             chhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HH-HHHHHHhc
Confidence            45689999999999999999999999999999999997744 22 34555555

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.57  E-value=4.3e-07  Score=84.74  Aligned_cols=97  Identities=21%  Similarity=0.271  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ..+.+|||+|||+|.....++... ..+|+++|+++.+++....                              ..+++.
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------------------------------~~~~~~   77 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------------------------------RGVDAR   77 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh------------------------------cCCcEE
Confidence            467899999999999998887652 2489999999998854200                              012233


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|-.+                                                         |       ...++||+|
T Consensus        78 ~~d~~~---------------------------------------------------------~-------~~~~~fD~v   93 (255)
T PRK14103         78 TGDVRD---------------------------------------------------------W-------KPKPDTDVV   93 (255)
T ss_pred             EcChhh---------------------------------------------------------C-------CCCCCceEE
Confidence            333110                                                         0       123589999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      ++..++......+.+++-+.+.|+ |+|.+++.
T Consensus        94 ~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~  125 (255)
T PRK14103         94 VSNAALQWVPEHADLLVRWVDELA-PGSWIAVQ  125 (255)
T ss_pred             EEehhhhhCCCHHHHHHHHHHhCC-CCcEEEEE
Confidence            999999888788888888888896 88988774

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.57  E-value=7e-07  Score=87.64  Aligned_cols=46  Identities=22%  Similarity=0.393  Sum_probs=36.5

Q ss_pred             CCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHH
Q 020125           97 GKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ..+|||||||+|..++.+++.+. .+|+++|+++.+++. ...|+..|
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~-A~~nl~~n  243 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES-SRATLAAN  243 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            34799999999999999887643 589999999999966 34455544

>PRK08317 hypothetical protein; Provisional

Probab=98.55  E-value=2.8e-06  Score=76.57  Aligned_cols=106  Identities=25%  Similarity=0.348  Sum_probs=73.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      ..++.+|||+|||+|..++.++...  ..+|+++|.++.+++.+     +.|..                   ....+++
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a-----~~~~~-------------------~~~~~~~   72 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA-----KERAA-------------------GLGPNVE   72 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-----HHHhh-------------------CCCCceE
Confidence            4568899999999999888776542  45899999999987542     22211                   0112344


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      +..+|....+                                                               ...+.||
T Consensus        73 ~~~~d~~~~~---------------------------------------------------------------~~~~~~D   89 (241)
T PRK08317         73 FVRGDADGLP---------------------------------------------------------------FPDGSFD   89 (241)
T ss_pred             EEecccccCC---------------------------------------------------------------CCCCCce
Confidence            4444422210                                                               1236899


Q ss_pred             EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +|++..++-.......+++.+.++|+ |+|.+++..
T Consensus        90 ~v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~  124 (241)
T PRK08317         90 AVRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLD  124 (241)
T ss_pred             EEEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEe
Confidence            99999999888888889999999996 888877653

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.55  E-value=3.4e-06  Score=79.18  Aligned_cols=62  Identities=23%  Similarity=0.289  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHH
Q 020125           77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLA  142 (330)
Q Consensus        77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~  142 (330)
                      +..|++.+.....   ....+.+|||+|||+|..++.++.. +..+|+++|+++.+++. ...|+..
T Consensus        70 Te~Lv~~~l~~~~---~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~-A~~N~~~  132 (251)
T TIGR03704        70 TEFLVDEAAALAR---PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRC-ARRNLAD  132 (251)
T ss_pred             HHHHHHHHHHhhc---ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHH
Confidence            4556665554321   1113458999999999999987753 34589999999999865 3444443

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.54  E-value=1.3e-06  Score=79.43  Aligned_cols=40  Identities=38%  Similarity=0.641  Sum_probs=35.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++++|||+|||+|..+..++..++ +|+++|+++++++.
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~   92 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQM   92 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            45789999999999999999888766 89999999999854

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.52  E-value=1.5e-06  Score=83.06  Aligned_cols=104  Identities=23%  Similarity=0.339  Sum_probs=75.0

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      ..-+|++|||+|||.|...++||+. |+ +|++++++++.++.     ++.-+..                 ..+..+++
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~-----~~~r~~~-----------------~gl~~~v~  125 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAY-----AEKRIAA-----------------RGLEDNVE  125 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHH-----HHHHHHH-----------------cCCCcccE
Confidence            3558999999999999999999976 66 89999999987633     2222211                 01223455


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      +.--||...                                                                  .++||
T Consensus       126 v~l~d~rd~------------------------------------------------------------------~e~fD  139 (283)
T COG2230         126 VRLQDYRDF------------------------------------------------------------------EEPFD  139 (283)
T ss_pred             EEecccccc------------------------------------------------------------------ccccc
Confidence            544455442                                                                  13499


Q ss_pred             EEEEeccccCccc--HHHHHHHHHHHcCCCCcEEEEE
Q 020125          252 VILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       252 vILasD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      -|++.+.+=....  ++.+++.+.++|+ |+|++++=
T Consensus       140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh  175 (283)
T COG2230         140 RIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLH  175 (283)
T ss_pred             eeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEE
Confidence            9999998876655  9999999999996 88987764

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.50  E-value=1e-06  Score=85.18  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=36.0

Q ss_pred             CEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           98 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        98 k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ++|||+|||+|..++.++... ..+|+++|+++.+++. ...|+..|
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~-A~~n~~~~  180 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAV-AEINIERH  180 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence            689999999999999988653 4589999999999965 34555443

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.50  E-value=2.4e-06  Score=79.64  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHH---cCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACL---KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~---~ga~~V~~tD~~~~vl~~  134 (330)
                      .+.+|||+|||+|...+.+++   ....+|++.|.++.+++.
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~   97 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIER   97 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence            678999999999998877665   223489999999999965

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.49  E-value=2.2e-06  Score=85.35  Aligned_cols=40  Identities=33%  Similarity=0.468  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      .-+|.+|||+|||+|..++.++.. |+ +|+++|+++++++.
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~  205 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKL  205 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            347889999999999999888764 55 89999999998854

>PLN02672 methionine S-methyltransferase

Probab=98.48  E-value=3e-06  Score=93.61  Aligned_cols=95  Identities=24%  Similarity=0.275  Sum_probs=62.6

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhcc
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  153 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~  153 (330)
                      +-+..|++.|...+   ...|++++|||+|||+|.+++.+++.. ..+|+++|+++++++. ...|+.+|.... .... 
T Consensus       100 peTE~lve~L~~~~---~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~-A~~Na~~n~l~~-~~~~-  173 (1082)
T PLN02672        100 DWSFTFYEGLNRHP---DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKV-AWINLYLNALDD-DGLP-  173 (1082)
T ss_pred             hhHHHHHHHHHhcc---cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHcCccc-cccc-
Confidence            56677777764432   124678999999999999999988753 4699999999999976 467777763210 0000 


Q ss_pred             CCCCCCCCcccCCCCceeeeecccCC
Q 020125          154 QPESSLTPSRQTLAPSVHFYAGDWEE  179 (330)
Q Consensus       154 ~~~s~~~~~~~~l~~~v~~~~gdW~~  179 (330)
                          ......+.+..+|+|+.+||-+
T Consensus       174 ----~~~~~~~~l~~rV~f~~sDl~~  195 (1082)
T PLN02672        174 ----VYDGEGKTLLDRVEFYESDLLG  195 (1082)
T ss_pred             ----ccccccccccccEEEEECchhh
Confidence                0000001233578999999865

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.47  E-value=4.9e-06  Score=74.61  Aligned_cols=103  Identities=25%  Similarity=0.395  Sum_probs=73.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ++++|||+|||+|..+..+++.+.  .++++.|.++.+++.     ...|..                    ...++++.
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~-----~~~~~~--------------------~~~~i~~~   93 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEV-----AKKKSE--------------------LPLNIEFI   93 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHH-----HHHHhc--------------------cCCCceEE
Confidence            789999999999999888877655  489999999988743     333321                    01234444


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.+                                                               ...++||+|
T Consensus        94 ~~d~~~~~---------------------------------------------------------------~~~~~~D~i  110 (223)
T TIGR01934        94 QADAEALP---------------------------------------------------------------FEDNSFDAV  110 (223)
T ss_pred             ecchhcCC---------------------------------------------------------------CCCCcEEEE
Confidence            44422210                                                               123579999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +.+..+.+......+++.+.+.|+ |+|++++..
T Consensus       111 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~  143 (223)
T TIGR01934       111 TIAFGLRNVTDIQKALREMYRVLK-PGGRLVILE  143 (223)
T ss_pred             EEeeeeCCcccHHHHHHHHHHHcC-CCcEEEEEE
Confidence            999888777888888888888886 889888753

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.46  E-value=2.3e-06  Score=77.61  Aligned_cols=40  Identities=23%  Similarity=0.439  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .++..+|||||||.|.-+++++..|. .|++.|+++..++.
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~   67 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEK   67 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence            46788999999999999999999998 89999999998854

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.45  E-value=5.7e-06  Score=75.10  Aligned_cols=40  Identities=20%  Similarity=0.255  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|..+..++.. + ..+|++.|+++++++.
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~  112 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIY  112 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence            46789999999999999777653 2 3489999999998865

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.45  E-value=2.8e-06  Score=77.40  Aligned_cols=40  Identities=10%  Similarity=-0.033  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|.....++.. +..+|++.|+++++++.
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~   82 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK   82 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            36779999999999998887764 44689999999999865

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.44  E-value=2.5e-06  Score=77.77  Aligned_cols=53  Identities=19%  Similarity=0.151  Sum_probs=39.0

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC  134 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~~  134 (330)
                      ..+...+.+..    ...++.+|||+|||+|..++.++....  .+|++.|+++++++.
T Consensus        63 p~~~~~~~~~l----~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~  117 (215)
T TIGR00080        63 PHMVAMMTELL----ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEK  117 (215)
T ss_pred             HHHHHHHHHHh----CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            34444444443    245788999999999999988876532  359999999998854

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.43  E-value=6.3e-08  Score=76.92  Aligned_cols=35  Identities=14%  Similarity=0.411  Sum_probs=23.5

Q ss_pred             CCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEE
Q 020125          248 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVV  283 (330)
Q Consensus       248 ~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~  283 (330)
                      ++||+|+++.+++.-+..+.+++.+.++|+ |+|++
T Consensus        65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~-pgG~l   99 (99)
T PF08242_consen   65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLK-PGGIL   99 (99)
T ss_dssp             ---SEEEEE-TTS--S-HHHHHHHHTTT-T-SS-EE
T ss_pred             cccceehhhhhHhhhhhHHHHHHHHHHHcC-CCCCC
Confidence            699999999999999999999999999996 88874

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.41  E-value=3.8e-06  Score=63.92  Aligned_cols=102  Identities=28%  Similarity=0.393  Sum_probs=71.4

Q ss_pred             EEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecccC
Q 020125           99 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWE  178 (330)
Q Consensus        99 ~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~  178 (330)
                      +|+|+|||+|..+..++.....++++.|.++..++...     .+...                  .....++++.+|+.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~------------------~~~~~~~~~~~~~~   57 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELAR-----KAAAA------------------LLADNVEVLKGDAE   57 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHH-----HHHhc------------------ccccceEEEEcChh
Confidence            48999999999988888766779999999998875421     11110                  01123455555443


Q ss_pred             CCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEecc
Q 020125          179 ELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEI  258 (330)
Q Consensus       179 ~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~  258 (330)
                      ...                                                       +       ...++||+|++.-+
T Consensus        58 ~~~-------------------------------------------------------~-------~~~~~~d~i~~~~~   75 (107)
T cd02440          58 ELP-------------------------------------------------------P-------EADESFDVIISDPP   75 (107)
T ss_pred             hhc-------------------------------------------------------c-------ccCCceEEEEEccc
Confidence            311                                                       0       12368999999999


Q ss_pred             ccC-cccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          259 PYS-VTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       259 iY~-~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      .+. ......+++.+...|+ ++|.+++.
T Consensus        76 ~~~~~~~~~~~l~~~~~~l~-~~g~~~~~  103 (107)
T cd02440          76 LHHLVEDLARFLEEARRLLK-PGGVLVLT  103 (107)
T ss_pred             eeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence            988 8888888888888886 88988876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.41  E-value=6.7e-07  Score=71.54  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=26.4

Q ss_pred             EEEEcccCCHHHHHHHHc---CC-CeEEEEeCChHHHHH
Q 020125          100 VLELSCGYGLPGIFACLK---GA-GTVHFQDLSAETIRC  134 (330)
Q Consensus       100 VLELGcGtGL~gi~a~~~---ga-~~V~~tD~~~~vl~~  134 (330)
                      |||+|||+|.....+...   +. .++++.|+++++++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~   39 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLEL   39 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHH
Confidence            799999999999887765   32 699999999999854

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.41  E-value=4.5e-06  Score=75.79  Aligned_cols=40  Identities=30%  Similarity=0.502  Sum_probs=35.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++.+|||+|||+|..+..++..+. +|+++|.++.+++.
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~  100 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEE  100 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence            34678999999999999999888876 69999999999865

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.39  E-value=3.7e-06  Score=76.45  Aligned_cols=121  Identities=23%  Similarity=0.374  Sum_probs=72.0

Q ss_pred             CCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecc
Q 020125           97 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD  176 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gd  176 (330)
                      -.++||+|||.|.....++... .+++++|.++..++..            +.+..            . .+.|++..+|
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~A------------r~Rl~------------~-~~~V~~~~~d   97 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARA------------RERLA------------G-LPHVEWIQAD   97 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHH------------HHHTT------------T--SSEEEEES-
T ss_pred             cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHH------------HHhcC------------C-CCCeEEEECc
Confidence            4579999999999998887663 5899999999988542            11110            0 1356554443


Q ss_pred             cCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEe
Q 020125          177 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT  256 (330)
Q Consensus       177 W~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILas  256 (330)
                      -.+                                                        .        ...++||+|+.|
T Consensus        98 vp~--------------------------------------------------------~--------~P~~~FDLIV~S  113 (201)
T PF05401_consen   98 VPE--------------------------------------------------------F--------WPEGRFDLIVLS  113 (201)
T ss_dssp             TTT-------------------------------------------------------------------SS-EEEEEEE
T ss_pred             CCC--------------------------------------------------------C--------CCCCCeeEEEEe
Confidence            111                                                        0        145799999999


Q ss_pred             ccccCcccHHHHHHHHH---HHcCCCCcEEEEEeccc--cc--cccccHHHHHHhhhhc
Q 020125          257 EIPYSVTSLKKLYLLIK---KCLRPPYGVVYLATKKN--YV--GFNNAARHLRSLVDEE  308 (330)
Q Consensus       257 D~iY~~~~~~~L~~~i~---~~L~~p~Gv~~lA~k~~--yf--Gv~gg~~~F~~~vee~  308 (330)
                      |+.|.-+..+.|...+.   ..|. |+|.+.+++-+-  ++  |-.-|...-..++.+.
T Consensus       114 EVlYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~  171 (201)
T PF05401_consen  114 EVLYYLDDAEDLRAALDRLVAALA-PGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH  171 (201)
T ss_dssp             S-GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred             hHhHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence            99999877665554444   5564 999999986432  11  2222566666666654

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.39  E-value=1.1e-05  Score=73.75  Aligned_cols=36  Identities=25%  Similarity=0.247  Sum_probs=29.8

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCCh
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSA  129 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~  129 (330)
                      ..++.+|||||||+|..+..++.. +. .+|++.|+++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            457889999999999998877664 32 5899999987

>TIGR00740 methyltransferase, putative

Probab=98.38  E-value=9.4e-06  Score=74.90  Aligned_cols=39  Identities=18%  Similarity=0.141  Sum_probs=32.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc---CCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~---ga~~V~~tD~~~~vl~~  134 (330)
                      .+.+|||+|||+|...+.+++.   ...+|++.|+++++++.
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~   94 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER   94 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence            6779999999999988887763   23589999999999855

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.38  E-value=7.2e-06  Score=79.69  Aligned_cols=52  Identities=29%  Similarity=0.222  Sum_probs=40.8

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..|+..+.+..    ..-+|.+|||.|||+|...+.++..|+ +|++.|+++.+++.
T Consensus       168 ~~la~~~~~l~----~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~  219 (329)
T TIGR01177       168 PKLARAMVNLA----RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAG  219 (329)
T ss_pred             HHHHHHHHHHh----CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHH
Confidence            45666665432    234678999999999999988888776 89999999999865

This family is found exclusively in the Archaea.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.37  E-value=9.1e-06  Score=75.56  Aligned_cols=138  Identities=13%  Similarity=0.194  Sum_probs=85.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .+.++|||+|||+|..++.++.  .+..+|+..|++++.++. .+.|+..|.                     +..++++
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~-A~~n~~~~g---------------------l~~~i~~  124 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEV-GLEFIKKAG---------------------VDHKINF  124 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEE
Confidence            4688999999999997776553  345699999999998864 345554431                     2346777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..||..+.   ++.+                                            .          .....++||+
T Consensus       125 ~~gda~~~---L~~l--------------------------------------------~----------~~~~~~~fD~  147 (234)
T PLN02781        125 IQSDALSA---LDQL--------------------------------------------L----------NNDPKPEFDF  147 (234)
T ss_pred             EEccHHHH---HHHH--------------------------------------------H----------hCCCCCCCCE
Confidence            77775441   1000                                            0          0012468999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccccc---------------ccccHHHHHHhhhhcCceeEEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG---------------FNNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfG---------------v~gg~~~F~~~vee~G~f~~~~~  316 (330)
                      |+. |.-  ...+..+++.+.++|+ |+|++.+-. ..+.|               ...+.++|.+.+.++--+.+.++
T Consensus       148 Vfi-Da~--k~~y~~~~~~~~~ll~-~GG~ii~dn-~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~l  221 (234)
T PLN02781        148 AFV-DAD--KPNYVHFHEQLLKLVK-VGGIIAFDN-TLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQI  221 (234)
T ss_pred             EEE-CCC--HHHHHHHHHHHHHhcC-CCeEEEEEc-CCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEE
Confidence            876 321  2566677887778886 888766421 11111               11246688888877655555543

>PRK04266 fibrillarin; Provisional

Probab=98.36  E-value=2.5e-05  Score=72.50  Aligned_cols=64  Identities=16%  Similarity=0.192  Sum_probs=44.1

Q ss_pred             CcccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           70 FLKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        70 g~k~W~ss-~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      ++++|... ..++.+|.... +....-+|.+|||+|||+|..++.++.. +..+|++.|.++++++.
T Consensus        46 ~~~~~~~~r~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~  111 (226)
T PRK04266         46 EYREWNPRRSKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRE  111 (226)
T ss_pred             EEEEECCCccchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHH
Confidence            45677654 33444444322 0113457889999999999999888764 33589999999999864

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.33  E-value=6.2e-06  Score=83.38  Aligned_cols=60  Identities=20%  Similarity=0.142  Sum_probs=44.2

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ..|.+.+.+..    ...++.+|||+|||+|..++.++..+ ++|++.|+++++++.. ..|+..|
T Consensus       283 e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A-~~n~~~~  342 (443)
T PRK13168        283 QKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERA-RENARRN  342 (443)
T ss_pred             HHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHH-HHHHHHc
Confidence            44555555442    23467899999999999999998876 5899999999999663 3444433

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.32  E-value=4.3e-06  Score=83.43  Aligned_cols=130  Identities=25%  Similarity=0.294  Sum_probs=91.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ..+||+||+|=|=||-.|+.|++.||++|+..|.+..+|+. ...|+.+|...                    ..+++|.
T Consensus       215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~-a~~N~~LNg~~--------------------~~~~~~i  273 (393)
T COG1092         215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEW-ARENAELNGLD--------------------GDRHRFI  273 (393)
T ss_pred             hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHH-HHHHHHhcCCC--------------------ccceeee
Confidence            45699999999999999999999999999999999999976 56788777421                    1234444


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|      +                                                     |+...+......+||+|
T Consensus       274 ~~D------v-----------------------------------------------------f~~l~~~~~~g~~fDlI  294 (393)
T COG1092         274 VGD------V-----------------------------------------------------FKWLRKAERRGEKFDLI  294 (393)
T ss_pred             hhh------H-----------------------------------------------------HHHHHHHHhcCCcccEE
Confidence            443      0                                                     00001111234689999


Q ss_pred             EE--------eccccCc-ccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhc
Q 020125          254 LL--------TEIPYSV-TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE  308 (330)
Q Consensus       254 La--------sD~iY~~-~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~  308 (330)
                      |.        .+-+++. ..|..|.....++|+ |+|++++++-.+.|    +...|+..+.+.
T Consensus       295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~~----~~~~f~~~i~~a  353 (393)
T COG1092         295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRHF----SSDLFLEIIARA  353 (393)
T ss_pred             EECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCcc----CHHHHHHHHHHH
Confidence            97        1222333 446667777777775 89999999877765    578888888763

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.31  E-value=2.8e-05  Score=74.49  Aligned_cols=39  Identities=13%  Similarity=0.010  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|..++.+++.. ..++++.|. +.+++.
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~  187 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL  187 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH
Confidence            356799999999999999888764 348999998 677754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=1.3e-05  Score=77.08  Aligned_cols=47  Identities=32%  Similarity=0.610  Sum_probs=39.5

Q ss_pred             CCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125           97 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANL  144 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~  144 (330)
                      +.+|||||||.|.+|+.+++.. ..+|+++|.|...++. .+.|+..|.
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~-ar~Nl~~N~  206 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVES-ARKNLAANG  206 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHH-HHHhHHHcC
Confidence            3399999999999999999765 5799999999999977 467777663

>PLN03075 nicotianamine synthase; Provisional

Probab=98.29  E-value=1.7e-05  Score=76.46  Aligned_cols=115  Identities=17%  Similarity=0.184  Sum_probs=78.8

Q ss_pred             CCCEEEEEcccC-CHHHHHHHH--cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           96 RGKRVLELSCGY-GLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        96 ~~k~VLELGcGt-GL~gi~a~~--~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      ..++|+|+|||. |+.++.++.  ....+++..|+++++++.. +    .+....                ..+..+++|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A-r----~~~~~~----------------~gL~~rV~F  181 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA-R----RLVSSD----------------PDLSKRMFF  181 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH-H----HHhhhc----------------cCccCCcEE
Confidence            789999999994 566666552  2345899999999988542 1    222100                024456888


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+..                                                               ...++||+
T Consensus       182 ~~~Da~~~~---------------------------------------------------------------~~l~~FDl  198 (296)
T PLN03075        182 HTADVMDVT---------------------------------------------------------------ESLKEYDV  198 (296)
T ss_pred             EECchhhcc---------------------------------------------------------------cccCCcCE
Confidence            777643310                                                               01357999


Q ss_pred             EEEeccccC-cccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHH
Q 020125          253 ILLTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLR  302 (330)
Q Consensus       253 ILasD~iY~-~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~  302 (330)
                      |+..=++|. ......+++-|.+.|+ |+|++++-.-       .|.+.|+
T Consensus       199 VF~~ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~~-------~G~r~~L  241 (296)
T PLN03075        199 VFLAALVGMDKEEKVKVIEHLGKHMA-PGALLMLRSA-------HGARAFL  241 (296)
T ss_pred             EEEecccccccccHHHHHHHHHHhcC-CCcEEEEecc-------cchHhhc
Confidence            999966776 4788899999999996 8999887651       2567775

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.28  E-value=1.1e-05  Score=73.78  Aligned_cols=55  Identities=24%  Similarity=0.266  Sum_probs=40.0

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCChHHHHH
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRC  134 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~~vl~~  134 (330)
                      ++..+...+.+..    ..-++.+|||+|||+|..+..++.. +. .+|++.|+++++++.
T Consensus        60 ~~p~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~  116 (212)
T PRK13942         60 SAIHMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEK  116 (212)
T ss_pred             CcHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence            3444444454442    2347889999999999999877654 32 489999999999865

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.27  E-value=1.1e-05  Score=70.65  Aligned_cols=39  Identities=18%  Similarity=0.106  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -.+.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~   50 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPR   50 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHH
Confidence            467799999999999999998874 589999999998854

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.27  E-value=1.8e-05  Score=71.69  Aligned_cols=54  Identities=19%  Similarity=0.075  Sum_probs=39.5

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ++..+..++.+..    ..-++.+|||+|||+|..+..++..+ .+|++.|+++++++.
T Consensus        62 ~~p~~~~~l~~~l----~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~  115 (212)
T PRK00312         62 SQPYMVARMTELL----ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWE  115 (212)
T ss_pred             CcHHHHHHHHHhc----CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHH
Confidence            3444445554432    23467899999999999988777665 489999999998754

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.25  E-value=9.4e-06  Score=74.58  Aligned_cols=62  Identities=19%  Similarity=0.036  Sum_probs=46.6

Q ss_pred             CCCCcccch---hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           67 PDGFLKCWE---SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        67 y~gg~k~W~---ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      |..+-.-|.   -.-.|.+++....     .-++.+||++|||.|.-+++++..|. +|++.|+++.+++.
T Consensus         7 y~~~~~~w~~~~p~~~l~~~~~~l~-----~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~   71 (213)
T TIGR03840         7 WQEGQIGFHQSEVNPLLVKHWPALG-----LPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQ   71 (213)
T ss_pred             HhcCCCCCccCCCCHHHHHHHHhhC-----CCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence            444444664   3456777765421     12567999999999999999999998 89999999999864

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PHA03411 putative methyltransferase; Provisional

Probab=98.24  E-value=1.5e-05  Score=76.06  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=32.1

Q ss_pred             CCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           97 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      +.+|||+|||+|.+++.++... ..+|+++|+++.+++.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~  103 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARI  103 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            4689999999999998887642 4689999999998865

>PRK00811 spermidine synthase; Provisional

Probab=98.23  E-value=1.8e-05  Score=75.59  Aligned_cols=40  Identities=15%  Similarity=0.148  Sum_probs=34.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      ..++||++|||.|.....+++. ++.+|++.|+++++++.+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a  116 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVC  116 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHH
Confidence            4689999999999998877775 678999999999999763

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.23  E-value=9.9e-06  Score=75.45  Aligned_cols=105  Identities=23%  Similarity=0.349  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .+|.+|||+|||||-.++.+++. + ..+|++.|+++.||+..     +......                 .. .+|++
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a-----~~k~~~~-----------------~~-~~i~~  102 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVA-----RKKLKRE-----------------GL-QNIEF  102 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHH-----HHHHHHT-----------------T---SEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHH-----HHHHHhh-----------------CC-CCeeE
Confidence            46889999999999999887764 3 24899999999999552     1111110                 01 25666


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|=++++                                                               ..+..||+
T Consensus       103 v~~da~~lp---------------------------------------------------------------~~d~sfD~  119 (233)
T PF01209_consen  103 VQGDAEDLP---------------------------------------------------------------FPDNSFDA  119 (233)
T ss_dssp             EE-BTTB-----------------------------------------------------------------S-TT-EEE
T ss_pred             EEcCHHHhc---------------------------------------------------------------CCCCceeE
Confidence            666533321                                                               13478999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      |.++=.+-+....+..++-+.+.|+ |+|++.+.
T Consensus       120 v~~~fglrn~~d~~~~l~E~~RVLk-PGG~l~il  152 (233)
T PF01209_consen  120 VTCSFGLRNFPDRERALREMYRVLK-PGGRLVIL  152 (233)
T ss_dssp             EEEES-GGG-SSHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EEHHhhHHhhCCHHHHHHHHHHHcC-CCeEEEEe
Confidence            9988888777677777777777886 88876654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.22  E-value=1e-05  Score=74.61  Aligned_cols=51  Identities=24%  Similarity=0.161  Sum_probs=41.2

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -.|++++...     ..-++.+||++|||.|.-.++++..|. +|++.|+++..++.
T Consensus        24 ~~L~~~~~~~-----~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~   74 (218)
T PRK13255         24 PLLQKYWPAL-----ALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ   74 (218)
T ss_pred             HHHHHHHHhh-----CCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence            5566666532     123577999999999999999999988 89999999999865

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.22  E-value=9.9e-06  Score=82.14  Aligned_cols=104  Identities=24%  Similarity=0.270  Sum_probs=72.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++++|||+|||+|..+..++..+ .+|++.|+++.+++.    |...|.                     ..+++.+..
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~----a~~~~~---------------------~~~~i~~~~   89 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKK----NESING---------------------HYKNVKFMC   89 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHH----HHHHhc---------------------cCCceEEEE
Confidence            467899999999999999988775 589999999998843    222110                     113455655


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|......                                                             ......||+|+
T Consensus        90 ~d~~~~~~-------------------------------------------------------------~~~~~~fD~I~  108 (475)
T PLN02336         90 ADVTSPDL-------------------------------------------------------------NISDGSVDLIF  108 (475)
T ss_pred             eccccccc-------------------------------------------------------------CCCCCCEEEEe
Confidence            55432100                                                             01236899999


Q ss_pred             EeccccCccc--HHHHHHHHHHHcCCCCcEEEEE
Q 020125          255 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       255 asD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      +.-+++.-..  ...+++-+.+.|+ |+|++++.
T Consensus       109 ~~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~  141 (475)
T PLN02336        109 SNWLLMYLSDKEVENLAERMVKWLK-VGGYIFFR  141 (475)
T ss_pred             hhhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEE
Confidence            9998886543  5678888888886 88988764

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.20  E-value=2.6e-05  Score=70.16  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=32.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      ...+|||+|||+|..++.++.. ...+|++.|+++.+++.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~   55 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLA   55 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHH
Confidence            4568999999999999887764 34589999999999865

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.20  E-value=1.2e-05  Score=77.62  Aligned_cols=47  Identities=23%  Similarity=0.376  Sum_probs=38.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .++.+|||+|||+|..++.++..+ .+|++.|+++.+++. ...|+..|
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~-A~~n~~~~  218 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIAC-AKQSAAEL  218 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHH-HHHHHHHc
Confidence            467899999999999999999877 599999999999965 34444443

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.20  E-value=8.3e-06  Score=80.85  Aligned_cols=47  Identities=17%  Similarity=0.270  Sum_probs=38.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ..+++|||||||+|..++.++..+ .+|++.|+++.+++. ...|+..|
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~-a~~N~~~~  278 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIAC-AQQSAQML  278 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHH-HHHHHHHc
Confidence            457899999999999999998776 589999999999966 34555444

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.19  E-value=3.1e-05  Score=69.40  Aligned_cols=46  Identities=17%  Similarity=0.092  Sum_probs=36.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      -++.+|||+|||+|..++.+++. ...+|++.|.++++++. ...|+.
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~-a~~n~~   85 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNL-IRRNCD   85 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHH
Confidence            36789999999999999887754 34689999999999865 244444

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.19  E-value=6.8e-06  Score=80.01  Aligned_cols=38  Identities=32%  Similarity=0.457  Sum_probs=35.2

Q ss_pred             CCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCCh
Q 020125           92 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA  129 (330)
Q Consensus        92 ~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~  129 (330)
                      ..+|+||.|||+|||+|+++++|+.+||++|.+.+-+.
T Consensus       173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~  210 (517)
T KOG1500|consen  173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE  210 (517)
T ss_pred             ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH
Confidence            45899999999999999999999999999999998765

>PRK05785 hypothetical protein; Provisional

Probab=98.19  E-value=1.4e-05  Score=73.86  Aligned_cols=39  Identities=21%  Similarity=0.138  Sum_probs=32.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .+.+|||+|||||.....++.....+|++.|.+++|++.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~   89 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM   89 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence            377999999999999888776633489999999999854

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.17  E-value=3.5e-05  Score=69.55  Aligned_cols=61  Identities=23%  Similarity=0.280  Sum_probs=45.0

Q ss_pred             cc---hhHHHHHHHHhhhhhcCCCCCCCC-EEEEEcccCCHHHHHHHHcCCC-eEEEEeCChHHHHH
Q 020125           73 CW---ESSIDLVNVLKHEIRDGQLSFRGK-RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRC  134 (330)
Q Consensus        73 ~W---~ss~~La~~l~~~~~~~~~~~~~k-~VLELGcGtGL~gi~a~~~ga~-~V~~tD~~~~vl~~  134 (330)
                      +|   ++-..+.+||.+++...+ .-+.. +|||||||-|..-.-++..|.. ..+++||++.++++
T Consensus        41 vWFg~~ae~riv~wl~d~~~~~r-v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L  106 (227)
T KOG1271|consen   41 VWFGEDAEERIVDWLKDLIVISR-VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL  106 (227)
T ss_pred             eecCCcHHHHHHHHHHhhhhhhh-hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence            66   344778889988764111 12333 9999999999888778877654 49999999999865

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.16  E-value=1.7e-05  Score=74.24  Aligned_cols=104  Identities=25%  Similarity=0.402  Sum_probs=76.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      +|.+|||+|||||-..+..++ .|..+|++.|+++.||+..        -.    +..     ..     .... |.|..
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a--------~~----k~~-----~~-----~~~~-i~fv~  107 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA--------RE----KLK-----KK-----GVQN-VEFVV  107 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH--------HH----Hhh-----cc-----Cccc-eEEEE
Confidence            799999999999999988775 4567999999999998431        11    100     00     1112 66666


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|=++++                                                               -.+..||++.
T Consensus       108 ~dAe~LP---------------------------------------------------------------f~D~sFD~vt  124 (238)
T COG2226         108 GDAENLP---------------------------------------------------------------FPDNSFDAVT  124 (238)
T ss_pred             echhhCC---------------------------------------------------------------CCCCccCEEE
Confidence            6644432                                                               1357899999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      .+=.+=+....+..++-+.+.|+ |+|++++.
T Consensus       125 ~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vl  155 (238)
T COG2226         125 ISFGLRNVTDIDKALKEMYRVLK-PGGRLLVL  155 (238)
T ss_pred             eeehhhcCCCHHHHHHHHHHhhc-CCeEEEEE
Confidence            99999999999998888999997 88987765

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.15  E-value=1.7e-05  Score=74.96  Aligned_cols=42  Identities=21%  Similarity=0.431  Sum_probs=32.3

Q ss_pred             CCCccEEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEecc
Q 020125          247 EGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKK  289 (330)
Q Consensus       247 ~~~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~  289 (330)
                      .++||+|++..++..-  .....+++-+.++|+ |+|.++++..-
T Consensus       201 ~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~lg~~E  244 (264)
T smart00138      201 LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFLGHSE  244 (264)
T ss_pred             cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEEECcc
Confidence            5689999998876433  345678888888996 99999987543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK03612 spermidine synthase; Provisional

Probab=98.15  E-value=1.7e-05  Score=81.95  Aligned_cols=40  Identities=28%  Similarity=0.214  Sum_probs=34.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~  135 (330)
                      +.++||++|||+|.....+++.+. ++|++.|+|+++++.+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~a  337 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELA  337 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHH
Confidence            568999999999998888777654 7999999999999763

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.12  E-value=1.5e-05  Score=80.92  Aligned_cols=58  Identities=26%  Similarity=0.383  Sum_probs=41.1

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-----CCeEEEEeCChHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-----AGTVHFQDLSAETI  132 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g-----a~~V~~tD~~~~vl  132 (330)
                      ..+.+  +.+.|.+.........+++.||++|||+|.++.++++++     +.+|++.+.|+.+.
T Consensus       165 ~Ye~A--I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~  227 (448)
T PF05185_consen  165 QYERA--IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV  227 (448)
T ss_dssp             HHHHH--HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH
T ss_pred             HHHHH--HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH
Confidence            34444  355566555433334478999999999999999988776     68999999999766

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.12  E-value=5.5e-05  Score=76.07  Aligned_cols=46  Identities=20%  Similarity=0.193  Sum_probs=37.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ++.+|||+|||+|..++.++.. +++|++.|+++.+++. ...|+..|
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~-a~~n~~~~  337 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEK-AQQNAELN  337 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHH-HHHHHHHh
Confidence            4689999999999999998876 4589999999999865 34555544

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.11  E-value=1.3e-05  Score=72.04  Aligned_cols=112  Identities=26%  Similarity=0.392  Sum_probs=72.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      +.|.+||||=||||..|+-|...||++|++.|.++..+     ..++.|+....                 +..+++++.
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~-----~~i~~N~~~l~-----------------~~~~~~v~~   98 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAI-----KIIKKNLEKLG-----------------LEDKIRVIK   98 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHH-----HHHHHHHHHHT------------------GGGEEEEE
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHH-----HHHHHHHHHhC-----------------CCcceeeec
Confidence            68999999999999999999999999999999999987     45666765321                 112344444


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      .|...                                                        ++.+.   .....+||+|.
T Consensus        99 ~d~~~--------------------------------------------------------~l~~~---~~~~~~fDiIf  119 (183)
T PF03602_consen   99 GDAFK--------------------------------------------------------FLLKL---AKKGEKFDIIF  119 (183)
T ss_dssp             SSHHH--------------------------------------------------------HHHHH---HHCTS-EEEEE
T ss_pred             cCHHH--------------------------------------------------------HHHhh---cccCCCceEEE
Confidence            33111                                                        01000   01357899885


Q ss_pred             EeccccCcccH-HHHHHHHH--HHcCCCCcEEEEEecc
Q 020125          255 LTEIPYSVTSL-KKLYLLIK--KCLRPPYGVVYLATKK  289 (330)
Q Consensus       255 asD~iY~~~~~-~~L~~~i~--~~L~~p~Gv~~lA~k~  289 (330)
                       .|=.|..... +.+++.|.  .+|. ++|++++-+.+
T Consensus       120 -lDPPY~~~~~~~~~l~~l~~~~~l~-~~~~ii~E~~~  155 (183)
T PF03602_consen  120 -LDPPYAKGLYYEELLELLAENNLLN-EDGLIIIEHSK  155 (183)
T ss_dssp             -E--STTSCHHHHHHHHHHHHTTSEE-EEEEEEEEEET
T ss_pred             -ECCCcccchHHHHHHHHHHHCCCCC-CCEEEEEEecC
Confidence             6899999884 88888877  3564 78988887644

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.10  E-value=7.4e-05  Score=75.56  Aligned_cols=46  Identities=17%  Similarity=0.146  Sum_probs=36.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      -+|.+|||+|||+|..++.++..  +..+|++.|+++..++. +..|+.
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~-~~~n~~  296 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKL-IEENAK  296 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHH
Confidence            36789999999999999887764  34689999999999855 234443

>PTZ00146 fibrillarin; Provisional

Probab=98.08  E-value=0.00017  Score=69.53  Aligned_cols=63  Identities=19%  Similarity=0.206  Sum_probs=44.4

Q ss_pred             cccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           71 LKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        71 ~k~W~ss-~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      +++|+-- =-||..|..-+.. ....++.+|||||||+|.....++.. | ...|++.|+++.+++.
T Consensus       107 yR~w~p~rSKlaa~i~~g~~~-l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~d  172 (293)
T PTZ00146        107 YRVWNPFRSKLAAAIIGGVAN-IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRD  172 (293)
T ss_pred             eeeeCCcccHHHHHHHCCcce-eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHH
Confidence            7899865 2345445433211 23467889999999999988888764 3 3589999999887644

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.08  E-value=3.4e-05  Score=68.74  Aligned_cols=38  Identities=32%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChH
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAE  130 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~  130 (330)
                      ..-+|++|||+|||+|..+..++..  +..+|++.|+++.
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~   68 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM   68 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence            3457899999999999988877654  3458999999984

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=0.0001  Score=66.38  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=53.9

Q ss_pred             CCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHH
Q 020125           65 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLA  142 (330)
Q Consensus        65 ~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~  142 (330)
                      .+||=+    |-++.|.+.|+.....-. .-.-+.++|+|||+|.++-++++.  +.....+||+|+.+++. |+.....
T Consensus        17 dVYEPa----EDTFlLlDaLekd~~eL~-~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~-Tl~TA~~   90 (209)
T KOG3191|consen   17 DVYEPA----EDTFLLLDALEKDAAELK-GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA-TLETARC   90 (209)
T ss_pred             hccCcc----chhhHHHHHHHHHHHHHh-hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH-HHHHHHh
Confidence            456633    567788888876643111 112578999999999999887652  34578999999999976 7788887


Q ss_pred             HHH
Q 020125          143 NLE  145 (330)
Q Consensus       143 N~~  145 (330)
                      |-.
T Consensus        91 n~~   93 (209)
T KOG3191|consen   91 NRV   93 (209)
T ss_pred             cCC
Confidence            754

>PRK04148 hypothetical protein; Provisional

Probab=98.04  E-value=2.5e-05  Score=67.06  Aligned_cols=49  Identities=14%  Similarity=0.227  Sum_probs=40.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHHcCCCeEEEEeCChHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAETI  132 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL-~gi~a~~~ga~~V~~tD~~~~vl  132 (330)
                      .+++||.++.    ...++++|||+|||+|. ++..++..|. .|+++|+++..+
T Consensus         3 ~i~~~l~~~~----~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV   52 (134)
T PRK04148          3 TIAEFIAENY----EKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV   52 (134)
T ss_pred             HHHHHHHHhc----ccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH
Confidence            5788888765    23467899999999997 8888888886 999999999976

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.03  E-value=6.9e-05  Score=73.13  Aligned_cols=40  Identities=25%  Similarity=0.241  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|..++.+++...  .+|++.|.++++++.
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~  120 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI  120 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence            4678999999999999988776432  369999999999865

>PRK01581 speE spermidine synthase; Validated

Probab=98.03  E-value=6.1e-05  Score=74.61  Aligned_cols=41  Identities=29%  Similarity=0.200  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      -..++||++|||+|.....+.+. +..+|++.|++++|++.+
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelA  190 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMA  190 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Confidence            35679999999999876666664 457999999999998653

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.02  E-value=0.00023  Score=71.71  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~  134 (330)
                      .+|.+|||+|||+|..++.++..+. .+|++.|.++.+++.
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~  283 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLER  283 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            4688999999999999988876543 589999999999855

>PRK06922 hypothetical protein; Provisional

Probab=97.98  E-value=6.3e-05  Score=79.28  Aligned_cols=41  Identities=15%  Similarity=0.162  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~  134 (330)
                      .+++.+|||+|||+|..+..++. ....+|+++|+++.+++.
T Consensus       416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~  457 (677)
T PRK06922        416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT  457 (677)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            45788999999999998766654 334599999999999855

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.95  E-value=0.00011  Score=69.48  Aligned_cols=39  Identities=18%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC----CCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG----AGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g----a~~V~~tD~~~~vl~~  134 (330)
                      .+.+|||+|||+|.....++...    ..+|++.|+++.+++.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~  127 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY  127 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH
Confidence            45789999999999887765431    2379999999999854

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.93  E-value=0.0001  Score=72.87  Aligned_cols=60  Identities=18%  Similarity=0.186  Sum_probs=43.0

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ...|.+++.+...     ..+.+||||+||+|..|+.+++. +++|++.|.++.+++. .+.|+..|
T Consensus       192 ~e~l~~~v~~~~~-----~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~-a~~N~~~~  251 (362)
T PRK05031        192 NEKMLEWALDATK-----GSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAA-AQYNIAAN  251 (362)
T ss_pred             HHHHHHHHHHHhh-----cCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHH-HHHHHHHh
Confidence            3455555554321     12357999999999999977764 6799999999999966 35566555

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.93  E-value=9.6e-05  Score=72.82  Aligned_cols=45  Identities=22%  Similarity=0.295  Sum_probs=36.0

Q ss_pred             CCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           97 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +++||||+||+|..|+.++.. +++|++.|.++++++. ...|+..|
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~-a~~n~~~~  242 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNA-AQYNIAAN  242 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHH-HHHHHHHc
Confidence            457999999999999977765 5699999999999966 34555544

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.93  E-value=4.3e-05  Score=70.20  Aligned_cols=40  Identities=28%  Similarity=0.429  Sum_probs=36.0

Q ss_pred             CCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          246 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       246 ~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      .++.||+|+.+=++.+.+.....++-++++|+ |+|++++-
T Consensus       142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifi  181 (252)
T KOG4300|consen  142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFI  181 (252)
T ss_pred             ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence            46799999999999999999999999999997 88988765

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.93  E-value=8e-05  Score=75.40  Aligned_cols=59  Identities=19%  Similarity=0.244  Sum_probs=42.4

Q ss_pred             CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHH
Q 020125           69 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        69 gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~  134 (330)
                      |-+.+++.+-.++-.+..       ..+|++|||+|||+|..++.++..  +..+|++.|.++.+++.
T Consensus       230 G~~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~  290 (445)
T PRK14904        230 GLVSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEK  290 (445)
T ss_pred             cEEEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence            335677655444444432       347899999999999888776642  34589999999999865

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.91  E-value=0.00032  Score=64.27  Aligned_cols=153  Identities=21%  Similarity=0.289  Sum_probs=94.0

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      ..+..-+++|....    ...+-++|||+|+++|..++.++..  ...+|+..|.+++..+. .++|+...         
T Consensus        28 ~i~~~~g~lL~~l~----~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~-A~~~~~~a---------   93 (205)
T PF01596_consen   28 SISPETGQLLQMLV----RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEI-ARENFRKA---------   93 (205)
T ss_dssp             SHHHHHHHHHHHHH----HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHH-HHHHHHHT---------
T ss_pred             ccCHHHHHHHHHHH----HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHH-HHHHHHhc---------
Confidence            34455555555433    2347889999999999999998863  12489999999998754 23444322         


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                  .+..+|++..||..+.   ++.+.                                            
T Consensus        94 ------------g~~~~I~~~~gda~~~---l~~l~--------------------------------------------  114 (205)
T PF01596_consen   94 ------------GLDDRIEVIEGDALEV---LPELA--------------------------------------------  114 (205)
T ss_dssp             ------------TGGGGEEEEES-HHHH---HHHHH--------------------------------------------
T ss_pred             ------------CCCCcEEEEEeccHhh---HHHHH--------------------------------------------
Confidence                        1234688877775431   11000                                            


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccccc-ccc---------cHHHHH
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG-FNN---------AARHLR  302 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfG-v~g---------g~~~F~  302 (330)
                                .....++||+|+-=-   +...|...++.+.++|+ ++|++. +---.+.| |..         .+++|.
T Consensus       115 ----------~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~-~ggvii-~DN~l~~G~V~~~~~~~~~~~~ir~f~  179 (205)
T PF01596_consen  115 ----------NDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLR-PGGVII-ADNVLWRGSVADPDDEDPKTVAIREFN  179 (205)
T ss_dssp             ----------HTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEE-EEEEEE-EETTTGGGGGGSTTGGSHHHHHHHHHH
T ss_pred             ----------hccCCCceeEEEEcc---cccchhhHHHHHhhhcc-CCeEEE-EccccccceecCccchhhhHHHHHHHH
Confidence                      001246899998633   36778888888888886 766665 43333333 111         267899


Q ss_pred             HhhhhcCceeEEE
Q 020125          303 SLVDEEGIFGAHL  315 (330)
Q Consensus       303 ~~vee~G~f~~~~  315 (330)
                      +++.++--|.+-+
T Consensus       180 ~~i~~d~~~~~~l  192 (205)
T PF01596_consen  180 EYIANDPRFETVL  192 (205)
T ss_dssp             HHHHH-TTEEEEE
T ss_pred             HHHHhCCCeeEEE
Confidence            9999876666654

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.89  E-value=3.1e-05  Score=72.12  Aligned_cols=56  Identities=21%  Similarity=0.154  Sum_probs=49.6

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI  132 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl  132 (330)
                      ++.++.-|.+.+...    ...++|++|||+|||||..+..++..|+++|++.|.++.++
T Consensus        56 vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l  111 (228)
T TIGR00478        56 VSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQL  111 (228)
T ss_pred             hhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Confidence            678888888888765    24689999999999999999999999999999999999877

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK04457 spermidine synthase; Provisional

Probab=97.88  E-value=6.9e-05  Score=70.86  Aligned_cols=39  Identities=15%  Similarity=0.209  Sum_probs=32.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++|||+|||+|.....++. ....+|++.|+++++++.
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~  105 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAV  105 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            468999999999999887654 344589999999999865

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.88  E-value=6.9e-05  Score=74.70  Aligned_cols=46  Identities=24%  Similarity=0.379  Sum_probs=38.2

Q ss_pred             CCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           97 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +.+|||++||+|..|+.+++ .++.+|++.|.|+.+++. ...|+.+|
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~-a~~N~~~N  104 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVEL-IKKNLELN  104 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence            56899999999999999875 567799999999999865 35666655

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.87  E-value=0.00051  Score=62.05  Aligned_cols=48  Identities=23%  Similarity=0.304  Sum_probs=39.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQ  146 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~  146 (330)
                      .-+|.+++|+|||||-++|-+++.+ ..+|++.|.+++.++.     +++|...
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~-----~~~N~~~   80 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALEL-----IERNAAR   80 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHH-----HHHHHHH
Confidence            4578899999999999999988654 3699999999999854     5666553

>PRK06202 hypothetical protein; Provisional

Probab=97.87  E-value=6.6e-05  Score=68.94  Aligned_cols=39  Identities=23%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHH----cCC-CeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACL----KGA-GTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~----~ga-~~V~~tD~~~~vl~~  134 (330)
                      ++.+|||+|||+|..+..++.    .|. .+|+++|+++++++.
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~  103 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAF  103 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH
Confidence            567999999999988777653    232 389999999999854

>PLN02476 O-methyltransferase

Probab=97.87  E-value=0.00061  Score=65.28  Aligned_cols=138  Identities=12%  Similarity=0.175  Sum_probs=88.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .+.|+|||+|+++|..++.+++. + ..+|+..|.+++.++. .+.|+..+.                     +..++++
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~-Ar~n~~~aG---------------------l~~~I~l  174 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEV-AKRYYELAG---------------------VSHKVNV  174 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEE
Confidence            47899999999999999998863 1 3479999999998755 345554331                     3346777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..||-.+   .++.+.                                                      .....++||+
T Consensus       175 i~GdA~e---~L~~l~------------------------------------------------------~~~~~~~FD~  197 (278)
T PLN02476        175 KHGLAAE---SLKSMI------------------------------------------------------QNGEGSSYDF  197 (278)
T ss_pred             EEcCHHH---HHHHHH------------------------------------------------------hcccCCCCCE
Confidence            7776322   111000                                                      0012357998


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc-c---------ccHHHHHHhhhhcCceeEEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF-N---------NAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv-~---------gg~~~F~~~vee~G~f~~~~~  316 (330)
                      |+-- .  +...|...++.+.++|+ ++|++.+ ---.+.|. -         -+.++|.+.+.++--|.+.++
T Consensus       198 VFID-a--~K~~Y~~y~e~~l~lL~-~GGvIV~-DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~ll  266 (278)
T PLN02476        198 AFVD-A--DKRMYQDYFELLLQLVR-VGGVIVM-DNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMV  266 (278)
T ss_pred             EEEC-C--CHHHHHHHHHHHHHhcC-CCcEEEE-ecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence            8752 1  24678888888888886 7787554 33333331 0         147999999988766666554

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.86  E-value=1.8e-05  Score=68.95  Aligned_cols=44  Identities=25%  Similarity=0.391  Sum_probs=40.6

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhh
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTT  136 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t  136 (330)
                      .++.||+++|||||+|.+++.++..++..|++.|+++++|+.++
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~   88 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT   88 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh
Confidence            46899999999999999999999999999999999999997753

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.85  E-value=1.6e-05  Score=73.94  Aligned_cols=68  Identities=15%  Similarity=0.215  Sum_probs=45.9

Q ss_pred             CCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc----ccccc------ccHHHHHHhhhhcCceeEE
Q 020125          246 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----YVGFN------NAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       246 ~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~----yfGv~------gg~~~F~~~vee~G~f~~~  314 (330)
                      ...+||+|.++|++-.--.++.++-....+|. |+|.+-+....-    .|-++      .+-.--+++++..|+-.+.
T Consensus       185 ~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~  262 (287)
T COG4976         185 TQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIA  262 (287)
T ss_pred             cCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEE
Confidence            46799999999999888999999999999886 778765543211    01121      1233445677778863333

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=97.85  E-value=9.5e-06  Score=76.92  Aligned_cols=46  Identities=26%  Similarity=0.285  Sum_probs=40.1

Q ss_pred             CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC
Q 020125           69 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG  118 (330)
Q Consensus        69 gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g  118 (330)
                      +|+.+|++++.|..++.+.+    ..+.+++|.++|||.++..+.+++..
T Consensus        67 tg~~~w~~al~L~~~l~~~~----d~~~~~~v~~l~~gi~~~~~~~a~~~  112 (262)
T KOG2497|consen   67 TGLSVWESALSLEADLRDKP----DLSSELTVEELGCDIALKHVLAARVP  112 (262)
T ss_pred             hccccchHHHHHHHHHhhCc----ccccccchHhhccCHHHHHHHHHhcc
Confidence            67889999999999999875    44889999999999999997777764

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.83  E-value=8.6e-05  Score=71.37  Aligned_cols=49  Identities=31%  Similarity=0.210  Sum_probs=41.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  144 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~  144 (330)
                      .+||+||+|=|=||-.|++|++.||++|+..|.+..+|+. ...|+.+|.
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~-a~~N~~lNg  170 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEW-AKENAALNG  170 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHH-HHHHHHHTT
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHcC
Confidence            4799999999999999999999999999999999999966 456777663

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PHA03412 putative methyltransferase; Provisional

Probab=97.82  E-value=0.00031  Score=65.90  Aligned_cols=39  Identities=13%  Similarity=0.126  Sum_probs=33.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc----CCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK----GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~----ga~~V~~tD~~~~vl~~  134 (330)
                      .+.+|||+|||+|.+++.++..    +..+|++.|+++.+++.
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~   91 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL   91 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence            4779999999999999988753    34589999999998865

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.82  E-value=0.00031  Score=62.84  Aligned_cols=39  Identities=21%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .+++|||+|||+|.....++......+++.|+++++++.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~   51 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLA   51 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHH
Confidence            567999999999998877765444478999999987743

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.78  E-value=6.7e-05  Score=70.16  Aligned_cols=39  Identities=21%  Similarity=0.225  Sum_probs=32.3

Q ss_pred             CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      ++..|+|++++++.- -.++.+++.+.+.||+++|++.+-
T Consensus        98 e~SVDlI~~Aqa~HW-Fdle~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen   98 EESVDLITAAQAVHW-FDLERFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             CcceeeehhhhhHHh-hchHHHHHHHHHHcCCCCCEEEEE
Confidence            678999999999864 457889999999999888775543

>TIGR03438 probable methyltransferase

Probab=97.76  E-value=0.00025  Score=68.26  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=32.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~  134 (330)
                      .+.+|||||||+|.....++...  ..+|++.|+++++|+.
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~  103 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKE  103 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHH
Confidence            56899999999999887776553  2589999999999855

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.75  E-value=0.00034  Score=70.62  Aligned_cols=47  Identities=17%  Similarity=0.120  Sum_probs=36.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLA  142 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~  142 (330)
                      .+|.+|||+|||+|..++.++..  +..+|++.|.++..++. .+.|+.+
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~-~~~n~~r  299 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKK-LQENAQR  299 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHH-HHHHHHH
Confidence            46889999999999988877653  23589999999999855 2344443

>TIGR00417 speE spermidine synthase

Probab=97.75  E-value=0.00079  Score=63.72  Aligned_cols=39  Identities=18%  Similarity=0.092  Sum_probs=32.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      ..++||++|||+|.....+++.. +.+|++.|+++++++.
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~  111 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIEL  111 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHH
Confidence            45699999999998777666654 6799999999999865

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02366 spermidine synthase

Probab=97.74  E-value=0.00085  Score=65.14  Aligned_cols=40  Identities=15%  Similarity=0.106  Sum_probs=33.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      ..++||++|||.|.....+++. +..+|++.|++++|++.+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~a  131 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVS  131 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHH
Confidence            4789999999999887777765 457899999999998763

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.72  E-value=0.00023  Score=71.13  Aligned_cols=40  Identities=13%  Similarity=0.143  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      ..+..+||+|||+|...+.+|+.. ...+++.|+++.+++.
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~  161 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQ  161 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence            346799999999999998888653 3589999999999865

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.71  E-value=0.00077  Score=67.90  Aligned_cols=58  Identities=12%  Similarity=0.047  Sum_probs=42.5

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHH
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      .++..++..|.        .-+|.+|||+|||+|..++.++. .+..+|++.|.++..++.+ ..|+.
T Consensus       225 ~~s~~~~~~L~--------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~-~~n~~  283 (426)
T TIGR00563       225 ASAQWVATWLA--------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRV-YENLK  283 (426)
T ss_pred             HHHHHHHHHhC--------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHHHH
Confidence            45566666663        23678999999999998888775 3445899999999998652 34444

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.68  E-value=0.00018  Score=71.57  Aligned_cols=46  Identities=17%  Similarity=0.189  Sum_probs=38.2

Q ss_pred             CCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           97 GKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +.+|||+-||+|..||-++..  |+++|++.|.|+++++. +..|++.|
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~-i~~N~~~N   92 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVES-IKNNVEYN   92 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence            458999999999999999986  78999999999999854 34555544

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.67  E-value=0.001  Score=63.05  Aligned_cols=70  Identities=21%  Similarity=0.300  Sum_probs=52.4

Q ss_pred             CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe---ccccccccc-------------------cHHHHHHh
Q 020125          247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KKNYVGFNN-------------------AARHLRSL  304 (330)
Q Consensus       247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~---k~~yfGv~g-------------------g~~~F~~~  304 (330)
                      ..+||+|-+--++=.-+.--.|++-|++.|+ |+|++++|.   =++|...++                   .+..|.+.
T Consensus       149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~-p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v  227 (265)
T PF05219_consen  149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALK-PNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNV  227 (265)
T ss_pred             CCceEEEeehhhhhccCCHHHHHHHHHHHhC-CCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHH
Confidence            3589999999999888888999999999997 699999883   234433332                   46677788


Q ss_pred             hhhcCceeEEEEee
Q 020125          305 VDEEGIFGAHLIKE  318 (330)
Q Consensus       305 vee~G~f~~~~~~e  318 (330)
                      ++..|+ ++.....
T Consensus       228 ~~p~GF-~v~~~tr  240 (265)
T PF05219_consen  228 FEPAGF-EVERWTR  240 (265)
T ss_pred             HHhcCC-EEEEEec
Confidence            888884 5554443

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=97.66  E-value=0.0003  Score=66.40  Aligned_cols=48  Identities=15%  Similarity=0.164  Sum_probs=36.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      -+|.+|||+|||+|-.++.++..  ....|++.|.++..++. ++.|+.+|
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~-~~~n~~~~  119 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKV-LIANINRC  119 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHH-HHHHHHHc
Confidence            36889999999999988876643  23489999999999865 34555544

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.62  E-value=0.00065  Score=68.75  Aligned_cols=46  Identities=22%  Similarity=0.155  Sum_probs=35.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      .+|.+|||+|||+|--++.++..  +..+|++.|.++..++. +..|+.
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~-~~~n~~  283 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQL-VEKHAK  283 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHH-HHHHHH
Confidence            46889999999999988877653  34589999999999865 234443

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.57  E-value=0.0009  Score=64.51  Aligned_cols=51  Identities=12%  Similarity=0.001  Sum_probs=39.1

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .+++.+.+..    ...++.+|||+|||+|..+..++..+ .+|++.|+|+.+++.
T Consensus        23 ~i~~~Iv~~~----~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~   73 (294)
T PTZ00338         23 LVLDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAE   73 (294)
T ss_pred             HHHHHHHHhc----CCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHH
Confidence            3444454432    34478899999999999998888765 489999999999854

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.56  E-value=0.00031  Score=66.58  Aligned_cols=65  Identities=15%  Similarity=0.100  Sum_probs=46.5

Q ss_pred             CCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           63 ISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        63 ~~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .+.++.|--.+++..  +++.+.+..    ..-++.+|||+|||+|..+..++..+. +|++.|+++.+++.
T Consensus        15 ~~~k~~gq~fl~~~~--i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~   79 (272)
T PRK00274         15 RAKKSLGQNFLIDEN--ILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPI   79 (272)
T ss_pred             CCCcccCcCcCCCHH--HHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence            344444442355543  445555442    234778999999999999999988876 89999999999865

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.54  E-value=0.0017  Score=58.78  Aligned_cols=41  Identities=32%  Similarity=0.507  Sum_probs=38.5

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .+.|.++|||=||+|.+|+-|+..||+.|++.|.|..++..
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~   81 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKI   81 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHH
Confidence            47899999999999999999999999999999999998854

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.0006  Score=62.67  Aligned_cols=57  Identities=19%  Similarity=0.075  Sum_probs=43.4

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .|-+...+...|.+..    ..-++.+|||+|||+|-.+-.+++... +|+..|..++..+.
T Consensus        53 qtis~P~~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~  109 (209)
T COG2518          53 QTISAPHMVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQ  109 (209)
T ss_pred             ceecCcHHHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHH
Confidence            4556665555555553    456889999999999998888777644 99999999987644

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.43  E-value=0.00059  Score=62.36  Aligned_cols=49  Identities=22%  Similarity=0.212  Sum_probs=37.3

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .-+|.+|+|+-||.|..+|.+++ .+++.|++.|.||.+++. +..|+.+|
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~-L~~Ni~lN  148 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEY-LKENIRLN  148 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHH-HHHHHHHT
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHH-HHHHHHHc
Confidence            34688999999999999999997 445689999999999976 46777777

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.41  E-value=0.0011  Score=63.28  Aligned_cols=72  Identities=17%  Similarity=0.122  Sum_probs=51.5

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHh
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQA  147 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~  147 (330)
                      -||.- .+++++.+.... ...+++..+||+|||+|..++.++. .+...|+++|.++.++.. +..|++++...+
T Consensus       127 RpETE-E~V~~Vid~~~~-~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~L-a~eN~qr~~l~g  199 (328)
T KOG2904|consen  127 RPETE-EWVEAVIDALNN-SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKL-AKENAQRLKLSG  199 (328)
T ss_pred             CccHH-HHHHHHHHHHhh-hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHH-HHHHHHHHhhcC
Confidence            35543 344444443321 2456777999999999999988653 556799999999999866 678999887643

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.40  E-value=0.0065  Score=56.36  Aligned_cols=135  Identities=18%  Similarity=0.260  Sum_probs=85.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      ...|+|||+|.+.|..++.++.. . ..+++.+|+|++..+     ..+.|+...                 .+..++.+
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~-----~A~~n~~~a-----------------g~~~~i~~  115 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAE-----IARENLAEA-----------------GVDDRIEL  115 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHH-----HHHHHHHHc-----------------CCcceEEE
Confidence            37899999999999999997752 2 358999999999874     456666532                 13345665


Q ss_pred             ee-cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          173 YA-GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       173 ~~-gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      .. ||+-+.   ++                                                         . ...+.||
T Consensus       116 ~~~gdal~~---l~---------------------------------------------------------~-~~~~~fD  134 (219)
T COG4122         116 LLGGDALDV---LS---------------------------------------------------------R-LLDGSFD  134 (219)
T ss_pred             EecCcHHHH---HH---------------------------------------------------------h-ccCCCcc
Confidence            55 454331   00                                                         0 1247899


Q ss_pred             EEEE-eccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc-----------cccccccHHHHHHhhhhcCceeEEEEe
Q 020125          252 VILL-TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-----------YVGFNNAARHLRSLVDEEGIFGAHLIK  317 (330)
Q Consensus       252 vILa-sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~-----------yfGv~gg~~~F~~~vee~G~f~~~~~~  317 (330)
                      +|+. +|    ...|+..++.+..+|+ |+|++++--=-.           +--...+++.|.+.+.++--+...++-
T Consensus       135 liFIDad----K~~yp~~le~~~~lLr-~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP  207 (219)
T COG4122         135 LVFIDAD----KADYPEYLERALPLLR-PGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLP  207 (219)
T ss_pred             EEEEeCC----hhhCHHHHHHHHHHhC-CCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEe
Confidence            8875 43    4456666666666786 888887642111           000112478898888887555666555

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.23  E-value=0.0091  Score=56.30  Aligned_cols=138  Identities=15%  Similarity=0.217  Sum_probs=85.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .+-++|||+|+++|..++.++..  .-.+|+..|.+++..+. .+.|+...                     .+..+|++
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~-Ar~~~~~a---------------------g~~~~I~~  135 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYEL-GLPVIQKA---------------------GVAHKIDF  135 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-HHHHHHHC---------------------CCCCceEE
Confidence            46789999999999999987753  12489999999987754 23333311                     13457888


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..|+..+   .++.+                                            .         +.....++||+
T Consensus       136 ~~G~a~e---~L~~l--------------------------------------------~---------~~~~~~~~fD~  159 (247)
T PLN02589        136 REGPALP---VLDQM--------------------------------------------I---------EDGKYHGTFDF  159 (247)
T ss_pred             EeccHHH---HHHHH--------------------------------------------H---------hccccCCcccE
Confidence            7777433   11100                                            0         00011368999


Q ss_pred             EEE-eccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc----------------cccHHHHHHhhhhcCceeEEE
Q 020125          253 ILL-TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------------NNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       253 ILa-sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv----------------~gg~~~F~~~vee~G~f~~~~  315 (330)
                      |+- +|    ...|...++.+.++|+ ++|++.+ ---...|.                ..++++|.+.+.++--|.+.+
T Consensus       160 iFiDad----K~~Y~~y~~~~l~ll~-~GGviv~-DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~l  233 (247)
T PLN02589        160 IFVDAD----KDNYINYHKRLIDLVK-VGGVIGY-DNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICM  233 (247)
T ss_pred             EEecCC----HHHhHHHHHHHHHhcC-CCeEEEE-cCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            876 33    5667777777777886 7787553 22222221                013568888888876666655


Q ss_pred             E
Q 020125          316 I  316 (330)
Q Consensus       316 ~  316 (330)
                      +
T Consensus       234 l  234 (247)
T PLN02589        234 L  234 (247)
T ss_pred             E
Confidence            4

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.23  E-value=0.001  Score=64.94  Aligned_cols=47  Identities=15%  Similarity=0.093  Sum_probs=35.7

Q ss_pred             CCCEEEEEcccCCHHHHHH-HHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFA-CLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a-~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .+.+|||+|||+|++...+ ++....+++++|+++.+++. ...|+..|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~-A~~Nv~~N  161 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALAS-AQAIISAN  161 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHH-HHHHHHhc
Confidence            4579999999998665444 44333489999999999976 46777777

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.22  E-value=0.0035  Score=59.04  Aligned_cols=42  Identities=19%  Similarity=0.250  Sum_probs=37.2

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~  134 (330)
                      ..|.++.+||+||-+|.+++..++ .|++.|++.|+++-.++.
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~   97 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQR   97 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHH
Confidence            468999999999999999999876 689999999999977644

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.18  E-value=0.0019  Score=60.66  Aligned_cols=51  Identities=18%  Similarity=0.108  Sum_probs=40.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .+++.+.+..    ...++++|||+|||+|..++.++..+ .+|++.|+++.+++.
T Consensus        16 ~~~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~   66 (258)
T PRK14896         16 RVVDRIVEYA----EDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEF   66 (258)
T ss_pred             HHHHHHHHhc----CCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHH
Confidence            3445555442    24578899999999999999999885 489999999998855

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.17  E-value=0.0026  Score=58.43  Aligned_cols=55  Identities=24%  Similarity=0.269  Sum_probs=35.5

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCC-CeEEEEeCChHHHHH
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRC  134 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga-~~V~~tD~~~~vl~~  134 (330)
                      ++..+...+.+..    ..-+|.+|||+|||+|..+-.++. .|. ..|+..|.++.+.+.
T Consensus        56 s~P~~~a~~l~~L----~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~  112 (209)
T PF01135_consen   56 SAPSMVARMLEAL----DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER  112 (209)
T ss_dssp             --HHHHHHHHHHT----TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH
T ss_pred             hHHHHHHHHHHHH----hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH
Confidence            3444444444443    355889999999999998877665 343 369999999998755

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.13  E-value=0.0011  Score=60.31  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=28.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI  132 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl  132 (330)
                      -+|.+|||||||.|-+--.+.........+.|++++-+
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v   49 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNV   49 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHH
Confidence            36889999999999766555543334899999999754

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.13  E-value=0.0012  Score=61.12  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=31.6

Q ss_pred             CCCEEEEEcccCCHHHHHHH-HcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~-~~ga~~V~~tD~~~~vl~~  134 (330)
                      .-.+|.|||||+|...-.++ +.....|++.|.+++||+.
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~   69 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAK   69 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHH
Confidence            45689999999998775554 5666699999999999854

>PLN02823 spermine synthase

Probab=97.10  E-value=0.015  Score=57.23  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=33.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      ..++||.+|+|.|.....+.+. +..+|++.|+++++++.+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~la  143 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFC  143 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHH
Confidence            4579999999999888766664 567999999999999763

>TIGR00755 ksgA dimethyladenosine transferase

Probab=96.94  E-value=0.0043  Score=58.02  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=34.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++.+|||+|||+|..+..++..+. +|++.|.++.+++.
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~   66 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEI   66 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence            34688999999999999999988765 79999999998844

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=96.90  E-value=0.02  Score=54.38  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cC------CCeEEEEeCChHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACL-KG------AGTVHFQDLSAETI  132 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~-~g------a~~V~~tD~~~~vl  132 (330)
                      ..++.+|||++||||-+..-... .+      .++|++.|+|+++|
T Consensus        98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL  143 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML  143 (296)
T ss_pred             CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence            45789999999999988776553 22      37999999999998

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.87  E-value=0.015  Score=53.48  Aligned_cols=96  Identities=25%  Similarity=0.222  Sum_probs=64.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      ..++|+|+|+|+|..++.+++. -..++++.|. |++++..     ..                        ..+|.+.+
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~-----~~------------------------~~rv~~~~  149 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQA-----KE------------------------ADRVEFVP  149 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCH-----HH------------------------TTTEEEEE
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcc-----cc------------------------cccccccc
Confidence            4468999999999999887753 3348999999 5566331     11                        13677777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      ||.-. +                                                                ... +|+|+
T Consensus       150 gd~f~-~----------------------------------------------------------------~P~-~D~~~  163 (241)
T PF00891_consen  150 GDFFD-P----------------------------------------------------------------LPV-ADVYL  163 (241)
T ss_dssp             S-TTT-C----------------------------------------------------------------CSS-ESEEE
T ss_pred             ccHHh-h----------------------------------------------------------------hcc-cccee
Confidence            77431 0                                                                112 99999


Q ss_pred             Eecccc--CcccHHHHHHHHHHHcCCCC--cEEEEEec
Q 020125          255 LTEIPY--SVTSLKKLYLLIKKCLRPPY--GVVYLATK  288 (330)
Q Consensus       255 asD~iY--~~~~~~~L~~~i~~~L~~p~--Gv~~lA~k  288 (330)
                      .+-+++  .++....|++-+...|+ |+  |+++|.--
T Consensus       164 l~~vLh~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~  200 (241)
T PF00891_consen  164 LRHVLHDWSDEDCVKILRNAAAALK-PGKDGRLLIIEM  200 (241)
T ss_dssp             EESSGGGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEE
T ss_pred             eehhhhhcchHHHHHHHHHHHHHhC-CCCCCeEEEEee
Confidence            999995  45666677888888886 66  99998753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=96.86  E-value=0.0034  Score=58.89  Aligned_cols=40  Identities=30%  Similarity=0.390  Sum_probs=37.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~  135 (330)
                      +|.+|||-=-|-|-.+|.|.+.||.+|+-.+.|+.||++.
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa  173 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA  173 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee
Confidence            7999999999999999999999999999999999998663

>PHA01634 hypothetical protein

Probab=96.59  E-value=0.0045  Score=53.06  Aligned_cols=52  Identities=13%  Similarity=0.102  Sum_probs=44.6

Q ss_pred             CCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           91 GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        91 ~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +...+++|+|+++|++.|-.+|+.+..||+.|++.+.++...+.. ..|+..|
T Consensus        23 ~~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~-een~k~n   74 (156)
T PHA01634         23 GMLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKW-EEVCAYF   74 (156)
T ss_pred             hheeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHH-HHHhhhh
Confidence            346799999999999999999999999999999999999876553 4566666

>PRK00536 speE spermidine synthase; Provisional

Probab=96.53  E-value=0.031  Score=53.23  Aligned_cols=39  Identities=13%  Similarity=-0.118  Sum_probs=33.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~  135 (330)
                      .-|+||=+|-|=|...--..+.. .+|++.|+|++|++.+
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~  110 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSF  110 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHH
Confidence            45899999999998777788775 4999999999999764

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.53  E-value=0.026  Score=52.55  Aligned_cols=52  Identities=21%  Similarity=0.137  Sum_probs=41.9

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~  135 (330)
                      -.|.+|+.+..     .-++.+||..|||.|.-.++++..|. +|++.|+++..++..
T Consensus        30 p~L~~~~~~l~-----~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~   81 (226)
T PRK13256         30 EFLVKHFSKLN-----INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSF   81 (226)
T ss_pred             HHHHHHHHhcC-----CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHH
Confidence            56666665431     22578999999999999999999998 699999999998653

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.48  E-value=0.047  Score=53.98  Aligned_cols=36  Identities=19%  Similarity=0.065  Sum_probs=32.2

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCCh
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA  129 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~  129 (330)
                      ...+|++||||||++|-..-.+...|+ +|++.|..+
T Consensus       208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~  243 (357)
T PRK11760        208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP  243 (357)
T ss_pred             ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence            357899999999999999999999998 899999654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.45  E-value=0.068  Score=49.14  Aligned_cols=63  Identities=14%  Similarity=0.247  Sum_probs=44.2

Q ss_pred             CCCCccEEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEeccccccc--cccHHHHHHhhhhcC
Q 020125          246 GEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF--NNAARHLRSLVDEEG  309 (330)
Q Consensus       246 ~~~~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv--~gg~~~F~~~vee~G  309 (330)
                      ....||.|+++-++--.  +..+.|++...++|+ ++|..++--.-.|-|.  ..+-..|-.-++++.
T Consensus        99 ~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd  165 (204)
T PF06080_consen   99 SPESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD  165 (204)
T ss_pred             CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC
Confidence            45789999999998755  557789999999996 8888766433333231  346777777777654

The function of this family is unknown.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.45  E-value=0.054  Score=51.81  Aligned_cols=46  Identities=22%  Similarity=0.114  Sum_probs=38.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  144 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~  144 (330)
                      -...+||-=|||.|.+..-.|..|. .|.+.+.+--|+   +.-|..+|.
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Ml---l~s~fiLn~  100 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFML---LASNFILNH  100 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHH---HHHHHHHcc
Confidence            4567999999999999999999998 899999999997   346666664

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.41  E-value=0.036  Score=52.97  Aligned_cols=44  Identities=18%  Similarity=0.403  Sum_probs=34.9

Q ss_pred             CCCCccEEEEeccc-cC-cccHHHHHHHHHHHcCCCCcEEEEEeccc
Q 020125          246 GEGGYDVILLTEIP-YS-VTSLKKLYLLIKKCLRPPYGVVYLATKKN  290 (330)
Q Consensus       246 ~~~~fDvILasD~i-Y~-~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~  290 (330)
                      ..++||+|++=.++ |- .+....+++.+...|+ |+|+.++..--.
T Consensus       199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~LflG~sE~  244 (268)
T COG1352         199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFLGHSET  244 (268)
T ss_pred             ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEEccCcc
Confidence            35789999998864 54 4567789999999996 999999986554

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.39  E-value=0.13  Score=48.66  Aligned_cols=47  Identities=21%  Similarity=0.252  Sum_probs=37.8

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCChHHHHHhhHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      .+.|.+|||-|.|+|.++.+++.  ....+|+..|+.++-++.. +.|+.
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A-~~Nl~  140 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTA-RENLS  140 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHH-HHHHH
Confidence            67999999999999999999884  2336999999999988652 44444

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.28  E-value=0.097  Score=49.87  Aligned_cols=62  Identities=21%  Similarity=0.163  Sum_probs=44.3

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCChHHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++.+..+..+.++++.....|..++|||+|||+|....++..  ....++++.|.++.+++.
T Consensus        10 r~p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l   73 (274)
T PF09243_consen   10 RMPATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLEL   73 (274)
T ss_pred             HhhHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHH
Confidence            34555666666666665445678999999999999865444332  246789999999998754

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.20  E-value=0.031  Score=55.08  Aligned_cols=50  Identities=24%  Similarity=0.268  Sum_probs=44.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  144 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~  144 (330)
                      ...|.+|+|+=||.|-.+|.+|++|+..|++.|+||..++. +..|+.+|-
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~-L~eNi~LN~  235 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY-LKENIRLNK  235 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH-HHHHHHhcC
Confidence            45699999999999999999999999789999999999987 478888884

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.12  E-value=0.011  Score=49.46  Aligned_cols=44  Identities=20%  Similarity=0.216  Sum_probs=34.9

Q ss_pred             EEEEEcccCCHHHHHHHHcCCC-eEEEEeCChHHHHHhhHHHHHHH
Q 020125           99 RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        99 ~VLELGcGtGL~gi~a~~~ga~-~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .|||+|||.|..++.++..+.+ +|++.|.++.+++. +..|+..|
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~-l~~~~~~n   45 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEI-LEENVKLN   45 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHH-HHHHHHHc
Confidence            4899999999999998887664 89999999998854 23444444

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.08  E-value=0.44  Score=44.93  Aligned_cols=164  Identities=16%  Similarity=0.194  Sum_probs=90.3

Q ss_pred             CCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125           67 PDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLE  145 (330)
Q Consensus        67 y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~  145 (330)
                      |+-++.+++.++.-|.++.++     ..+.||+||=+| =--|.||+++. ...++|+..|+++.+++.     |.....
T Consensus        20 ~DQ~~~T~eT~~~Ra~~~~~~-----gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~f-----I~~~a~   88 (243)
T PF01861_consen   20 LDQGYATPETTLRRAALMAER-----GDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDF-----INRVAE   88 (243)
T ss_dssp             GT---B-HHHHHHHHHHHHHT-----T-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHH-----HHHHHH
T ss_pred             cccccccHHHHHHHHHHHHhc-----CcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHH-----HHHHHH
Confidence            556778999999999999986     578999999999 55788988876 345799999999998854     222222


Q ss_pred             HhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 020125          146 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS  225 (330)
Q Consensus       146 ~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~  225 (330)
                      ..                 .+  .++.+..|...                                              
T Consensus        89 ~~-----------------gl--~i~~~~~DlR~----------------------------------------------  103 (243)
T PF01861_consen   89 EE-----------------GL--PIEAVHYDLRD----------------------------------------------  103 (243)
T ss_dssp             HH-----------------T----EEEE---TTS----------------------------------------------
T ss_pred             Hc-----------------CC--ceEEEEecccc----------------------------------------------
Confidence            10                 12  24444444222                                              


Q ss_pred             cccccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhh
Q 020125          226 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV  305 (330)
Q Consensus       226 ~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~v  305 (330)
                          .|+.           .-.++||+++ +|=.|-++.+.-++.-=-.+|+.+++..|++....-- ...-..++.+.+
T Consensus       104 ----~LP~-----------~~~~~fD~f~-TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-s~~~~~~~Q~~l  166 (243)
T PF01861_consen  104 ----PLPE-----------ELRGKFDVFF-TDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-SPDKWLEVQRFL  166 (243)
T ss_dssp             -------T-----------TTSS-BSEEE-E---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---HHHHHHHHHHH
T ss_pred             ----cCCH-----------HHhcCCCEEE-eCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-cHHHHHHHHHHH
Confidence                1111           1347899876 5888888877776655555788777788876433210 001235677777


Q ss_pred             hhcCceeEEEEeecCCcc
Q 020125          306 DEEGIFGAHLIKEMTDRD  323 (330)
Q Consensus       306 ee~G~f~~~~~~e~~d~~  323 (330)
                      -+.|+.-..++..+...+
T Consensus       167 ~~~gl~i~dii~~Fn~Y~  184 (243)
T PF01861_consen  167 LEMGLVITDIIPDFNRYE  184 (243)
T ss_dssp             HTS--EEEEEEEEEEEB-
T ss_pred             HHCCcCHHHHHhhhcccc
Confidence            788988777777666433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=95.99  E-value=0.18  Score=45.48  Aligned_cols=36  Identities=28%  Similarity=0.532  Sum_probs=29.0

Q ss_pred             CCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHH
Q 020125           97 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETI  132 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl  132 (330)
                      +++++|+|+|.|+|||.++... ..+|++.|-...=.
T Consensus        49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~   85 (184)
T PF02527_consen   49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV   85 (184)
T ss_dssp             CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH
T ss_pred             CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH
Confidence            3389999999999999977643 45899999988744

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=95.99  E-value=0.028  Score=52.98  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=27.5

Q ss_pred             EEEEEcccCCHHHHHHHHcCC---CeEEEEeCChHHHHH
Q 020125           99 RVLELSCGYGLPGIFACLKGA---GTVHFQDLSAETIRC  134 (330)
Q Consensus        99 ~VLELGcGtGL~gi~a~~~ga---~~V~~tD~~~~vl~~  134 (330)
                      +|||+|||.|-...-..+-.+   -.|+++|+++.+++.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~  112 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL  112 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence            699999999976555444222   479999999999855

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=95.90  E-value=0.09  Score=48.22  Aligned_cols=40  Identities=15%  Similarity=0.041  Sum_probs=28.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHH-HcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~-~~ga~~V~~tD~~~~vl~~  134 (330)
                      -++...+|||||.|-+-+.++ ..+.++.+++++.+...+.
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~   81 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDL   81 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHH
Confidence            357799999999999877655 5788889999999986644

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.86  E-value=0.086  Score=47.31  Aligned_cols=58  Identities=22%  Similarity=0.146  Sum_probs=46.9

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC  134 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~~  134 (330)
                      +=++|-.+|+-+...+    ..-.|+-|||||.|||...=+....|.  ..+++.+|+++-...
T Consensus        29 I~PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~   88 (194)
T COG3963          29 ILPSSSILARKMASVI----DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCH   88 (194)
T ss_pred             ecCCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHH
Confidence            6678888899888765    344788999999999999877777664  589999999997743

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=95.79  E-value=0.13  Score=55.25  Aligned_cols=62  Identities=18%  Similarity=0.189  Sum_probs=44.0

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC---------------------------------------
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG---------------------------------------  118 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g---------------------------------------  118 (330)
                      ..||..|....   .+.-.+..++|-.||+|-..|-|++..                                       
T Consensus       175 etlAaa~l~~a---~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~  251 (702)
T PRK11783        175 ENLAAAILLRS---GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG  251 (702)
T ss_pred             HHHHHHHHHHc---CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            56777766542   222357899999999999998887521                                       


Q ss_pred             ----CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125          119 ----AGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus       119 ----a~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                          ..++++.|+++.+++. .+.|+..|
T Consensus       252 ~~~~~~~i~G~Did~~av~~-A~~N~~~~  279 (702)
T PRK11783        252 LAELPSKFYGSDIDPRVIQA-ARKNARRA  279 (702)
T ss_pred             ccccCceEEEEECCHHHHHH-HHHHHHHc
Confidence                1269999999999976 35565544

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=95.70  E-value=0.021  Score=53.23  Aligned_cols=38  Identities=24%  Similarity=0.387  Sum_probs=34.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      +..-|||+|||+||.|-.+...| ..+++.|+++.||+.
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~   87 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQ   87 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHH
Confidence            56689999999999999988888 589999999999965

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=95.68  E-value=0.61  Score=44.05  Aligned_cols=48  Identities=23%  Similarity=0.183  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLE  145 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~  145 (330)
                      ...+|.+|||-|.|+|-+++++++.  ...+|+-.|+.++-++     +.+.|+.
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~-----~A~~n~~   86 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAE-----KARKNFE   86 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHH-----HHHHHHH
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHH-----HHHHHHH
Confidence            4678999999999999999988752  2358999999999774     3455554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.65  E-value=0.4  Score=44.97  Aligned_cols=40  Identities=18%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~  135 (330)
                      +.++||-+|-|.|...-.+.+.. .++|++.|+++.|++.+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a  116 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELA  116 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHH
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHH
Confidence            68999999999997766666544 57999999999999764

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.60  E-value=0.03  Score=52.59  Aligned_cols=53  Identities=23%  Similarity=0.225  Sum_probs=45.6

Q ss_pred             chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChH
Q 020125           74 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAE  130 (330)
Q Consensus        74 W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~  130 (330)
                      =.+++-|.+.|.+.    ...++|+++||+|+.||-..-++...||++|++.|..-.
T Consensus        61 SRG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~  113 (245)
T COG1189          61 SRGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG  113 (245)
T ss_pred             ccHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC
Confidence            34677788888765    378999999999999999999999999999999998654

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.57  E-value=0.051  Score=46.35  Aligned_cols=56  Identities=14%  Similarity=0.037  Sum_probs=39.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-----cCCCeEEEEeCChHHHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-----KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-----~ga~~V~~tD~~~~vl~~  134 (330)
                      .+++++..........-+...|+|+|||.|.+|.+++.     .-..+|++.|.++..++.
T Consensus         8 ~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~   68 (141)
T PF13679_consen    8 RMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES   68 (141)
T ss_pred             HHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence            35555555432211234677999999999999999887     434599999999987643

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=95.13  E-value=0.1  Score=50.31  Aligned_cols=43  Identities=19%  Similarity=0.443  Sum_probs=33.9

Q ss_pred             CCCccEEEEeccc--cCcccHHHHHHHHHHHcCCCCcEEEEEeccc
Q 020125          247 EGGYDVILLTEIP--YSVTSLKKLYLLIKKCLRPPYGVVYLATKKN  290 (330)
Q Consensus       247 ~~~fDvILasD~i--Y~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~  290 (330)
                      .++||+|++-.++  ++++....+++.+..+|+ |+|..++...-.
T Consensus       221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~lG~sEs  265 (287)
T PRK10611        221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFAGHSEN  265 (287)
T ss_pred             CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEEeCccc
Confidence            4789999996665  345668889999999996 899988876543

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=95.06  E-value=0.065  Score=47.57  Aligned_cols=60  Identities=30%  Similarity=0.394  Sum_probs=43.9

Q ss_pred             CEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeeccc
Q 020125           98 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDW  177 (330)
Q Consensus        98 k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW  177 (330)
                      +.|+|+-||.|--.|..|+.. .+|++.|+++.-+++     .++|....                 ....++.|..|||
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~-----a~hNa~vY-----------------Gv~~~I~~i~gD~   57 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLEC-----AKHNAEVY-----------------GVADNIDFICGDF   57 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHH-----HHHHHHHT-----------------T-GGGEEEEES-H
T ss_pred             CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEEEeCCH
Confidence            469999999999999999885 489999999998855     45665532                 1234799999999


Q ss_pred             CCC
Q 020125          178 EEL  180 (330)
Q Consensus       178 ~~~  180 (330)
                      .+.
T Consensus        58 ~~~   60 (163)
T PF09445_consen   58 FEL   60 (163)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            884

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.03  E-value=0.066  Score=48.77  Aligned_cols=43  Identities=16%  Similarity=0.445  Sum_probs=29.1

Q ss_pred             CCCCccEEEEeccc--cCcccHHHHHHHHHHHcCCCCcEEEEEecc
Q 020125          246 GEGGYDVILLTEIP--YSVTSLKKLYLLIKKCLRPPYGVVYLATKK  289 (330)
Q Consensus       246 ~~~~fDvILasD~i--Y~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~  289 (330)
                      ..++||+|++-.++  ++++....+++.+..+|+ |+|..++...-
T Consensus       133 ~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~lG~sE  177 (196)
T PF01739_consen  133 PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFLGHSE  177 (196)
T ss_dssp             ----EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE-TT-
T ss_pred             ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEEecCc
Confidence            45799999998875  344667789999999996 89999988644

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=94.95  E-value=0.66  Score=43.05  Aligned_cols=60  Identities=13%  Similarity=0.146  Sum_probs=39.4

Q ss_pred             CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCce
Q 020125          247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f  311 (330)
                      .+..|+++-+=-+--.+..+-|.+.- +.|+ ++|..+||--+-+|.   .+..|.+.++.-|+-
T Consensus       120 ~~svDv~VfcLSLMGTn~~~fi~EA~-RvLK-~~G~L~IAEV~SRf~---~~~~F~~~~~~~GF~  179 (219)
T PF05148_consen  120 DESVDVAVFCLSLMGTNWPDFIREAN-RVLK-PGGILKIAEVKSRFE---NVKQFIKALKKLGFK  179 (219)
T ss_dssp             TT-EEEEEEES---SS-HHHHHHHHH-HHEE-EEEEEEEEEEGGG-S----HHHHHHHHHCTTEE
T ss_pred             CCceeEEEEEhhhhCCCcHHHHHHHH-heec-cCcEEEEEEecccCc---CHHHHHHHHHHCCCe
Confidence            35677777665555555555555544 4787 899999997666665   689999999999963

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=94.86  E-value=0.4  Score=42.74  Aligned_cols=52  Identities=29%  Similarity=0.265  Sum_probs=35.2

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--C--------eEEEEeCChHHHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--G--------TVHFQDLSAETIRC  134 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga--~--------~V~~tD~~~~vl~~  134 (330)
                      .||..|....    ..-+|..|||-=||+|-.-|-++..+.  .        ++++.|+++++++.
T Consensus        15 ~lA~~ll~la----~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~   76 (179)
T PF01170_consen   15 TLAAALLNLA----GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRG   76 (179)
T ss_dssp             HHHHHHHHHT----T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHH
T ss_pred             HHHHHHHHHh----CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHH
Confidence            5666665542    223677999999999998888876433  1        27899999999865

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.80  E-value=0.12  Score=52.55  Aligned_cols=60  Identities=28%  Similarity=0.353  Sum_probs=44.2

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ..|.++..+..    ...++.+||||=||.|..|+.+++. +++|+++++++++++. ...|..+|
T Consensus       279 ekl~~~a~~~~----~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~-A~~NA~~n  338 (432)
T COG2265         279 EKLYETALEWL----ELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEA-AQENAAAN  338 (432)
T ss_pred             HHHHHHHHHHH----hhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHH-HHHHHHHc
Confidence            34444444442    2346789999999999999999965 6699999999999865 24555555

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=94.57  E-value=0.092  Score=51.82  Aligned_cols=61  Identities=21%  Similarity=0.190  Sum_probs=41.0

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ....|.+++.+..     ...+..||||=||+|..|+.++.. +++|++.|.++++++.. ..|...|
T Consensus       181 ~~~~l~~~~~~~l-----~~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A-~~Na~~N  241 (352)
T PF05958_consen  181 QNEKLYEQALEWL-----DLSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDA-RENAKLN  241 (352)
T ss_dssp             HHHHHHHHHHHHC-----TT-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHH-HHHHHHT
T ss_pred             HHHHHHHHHHHHh-----hcCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHH-HHHHHHc
Confidence            3345555555443     122338999999999999999876 45999999999998552 4555555

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=94.51  E-value=0.026  Score=51.59  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=39.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE  145 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~  145 (330)
                      ....+-|||+|+|+++++|+.+ |++|++.+.+|...++ ...|+..|..
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~-a~eN~~v~g~   79 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARL-AEENLHVPGD   79 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHH-hhhcCCCCCC
Confidence            3467889999999999999988 8899999999998766 4566654443

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=94.50  E-value=0.21  Score=46.62  Aligned_cols=62  Identities=18%  Similarity=0.285  Sum_probs=46.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .+|.+||++|.|.|++.-+...+...+-++++-+++|++.     ++.|...                   -..+|..+.
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~kr-----mr~~gw~-------------------ek~nViil~  155 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKR-----MRDWGWR-------------------EKENVIILE  155 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHH-----HHhcccc-------------------cccceEEEe
Confidence            5899999999999998888777766677888999999854     3334321                   124678888


Q ss_pred             cccCCC
Q 020125          175 GDWEEL  180 (330)
Q Consensus       175 gdW~~~  180 (330)
                      |-|+..
T Consensus       156 g~WeDv  161 (271)
T KOG1709|consen  156 GRWEDV  161 (271)
T ss_pred             cchHhh
Confidence            998773

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=94.38  E-value=0.43  Score=45.95  Aligned_cols=37  Identities=19%  Similarity=0.120  Sum_probs=31.8

Q ss_pred             CEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           98 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        98 k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      |+||-+|-|.|-..-.+.+.. ..++++.|+++.|++.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~  115 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIEL  115 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHH
Confidence            699999999998777777654 6799999999999865

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=94.37  E-value=1.1  Score=44.39  Aligned_cols=58  Identities=33%  Similarity=0.294  Sum_probs=47.8

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE  145 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~  145 (330)
                      ..||+.+.+..    ..-+|..|||==||||-.-|-|...|+ +|+++|++..+++.     ...|+.
T Consensus       183 P~lAR~mVNLa----~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~g-----ak~Nl~  240 (347)
T COG1041         183 PRLARAMVNLA----RVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRG-----AKINLE  240 (347)
T ss_pred             HHHHHHHHHHh----ccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhh-----hhhhhh
Confidence            56777777653    456899999999999999999999998 89999999999966     455554

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=94.06  E-value=0.14  Score=48.24  Aligned_cols=53  Identities=15%  Similarity=0.162  Sum_probs=41.9

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ...+++.+.+..    ..-++..|||+|+|+|..+-.++..+ ++|++.+.++...+.
T Consensus        15 ~~~~~~~Iv~~~----~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~   67 (262)
T PF00398_consen   15 DPNIADKIVDAL----DLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKH   67 (262)
T ss_dssp             HHHHHHHHHHHH----TCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHH
T ss_pred             CHHHHHHHHHhc----CCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHH
Confidence            345566666554    22378999999999999999998887 699999999987644

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=93.84  E-value=0.84  Score=43.59  Aligned_cols=59  Identities=19%  Similarity=0.221  Sum_probs=39.2

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--------cCCCeEEEEeCChHHHHHhhHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--------KGAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~--------~ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      ..++++|.+..    ....+.+|+|-.||+|-.-+.+..        ....++++.|+++.++..+ .-|+.
T Consensus        32 ~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la-~~nl~   98 (311)
T PF02384_consen   32 REIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALA-KLNLL   98 (311)
T ss_dssp             HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHH-HHHHH
T ss_pred             HHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHH-Hhhhh
Confidence            45566666554    234677999999999987777654        2456899999999988663 33443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=93.23  E-value=0.25  Score=47.00  Aligned_cols=55  Identities=15%  Similarity=0.140  Sum_probs=41.2

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      +++..+  .+.+.+..    ...++..|||+|+|.|-+...++..++ +|++.++|+.++..
T Consensus        13 L~d~~v--~~kIv~~a----~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~   67 (259)
T COG0030          13 LIDKNV--IDKIVEAA----NISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEV   67 (259)
T ss_pred             ccCHHH--HHHHHHhc----CCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHH
Confidence            555544  44444332    344588999999999999999998876 79999999998743

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=93.23  E-value=0.11  Score=47.91  Aligned_cols=56  Identities=30%  Similarity=0.382  Sum_probs=43.5

Q ss_pred             cchh---HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           73 CWES---SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        73 ~W~s---s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -|+.   ...|.+++.+.     ..-.+.+||.-|||.|.=.+.++..|. +|++.|+++.+++.
T Consensus        16 ~w~~~~~~p~L~~~~~~l-----~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~   74 (218)
T PF05724_consen   16 PWDQGEPNPALVEYLDSL-----ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQ   74 (218)
T ss_dssp             TT--TTSTHHHHHHHHHH-----TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHH
T ss_pred             CCCCCCCCHHHHHHHHhc-----CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence            4555   47888888762     133567999999999999999999997 89999999998855

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=93.12  E-value=0.073  Score=50.11  Aligned_cols=39  Identities=15%  Similarity=0.221  Sum_probs=34.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..+.++++|||.|.+.-.+...|..+++.+|.+-.|++.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s  110 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS  110 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence            346899999999998888888889999999999999854

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.98  E-value=1.3  Score=40.79  Aligned_cols=49  Identities=24%  Similarity=0.238  Sum_probs=34.3

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCCh
Q 020125           77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSA  129 (330)
Q Consensus        77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~  129 (330)
                      ++-|.+...+.    ...-+|++|+||||-.|-.+-++++. |+ ..|++.|+.|
T Consensus        30 a~KL~el~~k~----~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p   80 (205)
T COG0293          30 AYKLLELNEKF----KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP   80 (205)
T ss_pred             HHHHHHHHHhc----CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence            34444444433    24456799999999999999887764 33 2499999988

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=92.82  E-value=0.021  Score=52.93  Aligned_cols=64  Identities=23%  Similarity=0.219  Sum_probs=44.6

Q ss_pred             CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe---cccccc--cc------------------ccHHHHHH
Q 020125          247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KKNYVG--FN------------------NAARHLRS  303 (330)
Q Consensus       247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~---k~~yfG--v~------------------gg~~~F~~  303 (330)
                      +-+||+|++-.++=.-..--+|++-|+..|++.+|.+.+|-   -.||.-  ++                  ..+..|.+
T Consensus       167 ~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e  246 (288)
T KOG3987|consen  167 DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFME  246 (288)
T ss_pred             CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHH
Confidence            45788888877766666666788889888887699888772   344432  11                  24667888


Q ss_pred             hhhhcCc
Q 020125          304 LVDEEGI  310 (330)
Q Consensus       304 ~vee~G~  310 (330)
                      ++++.|+
T Consensus       247 ~lr~~g~  253 (288)
T KOG3987|consen  247 LLRNCGY  253 (288)
T ss_pred             HHHhcCc
Confidence            8888884

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=92.80  E-value=0.38  Score=46.76  Aligned_cols=45  Identities=18%  Similarity=0.245  Sum_probs=29.4

Q ss_pred             CCEEEEEcccCC-HHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           97 GKRVLELSCGYG-LPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        97 ~k~VLELGcGtG-L~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .-++||+|+|+- +-.|..++ .|- ++++||+++..++.+ ..||..|
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A-~~nv~~N  149 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESA-RENVERN  149 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHH-HHHHHHT
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHH-HHHHHhc
Confidence            458999999974 54555544 454 899999999999663 5666666

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=92.55  E-value=0.44  Score=45.89  Aligned_cols=53  Identities=13%  Similarity=0.090  Sum_probs=41.0

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ...++...+...     ..-.+..|||+|-|||.+...+..+|+ +|++.++++.++..
T Consensus        43 Np~v~~~I~~ka-----~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvae   95 (315)
T KOG0820|consen   43 NPLVIDQIVEKA-----DLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAE   95 (315)
T ss_pred             CHHHHHHHHhcc-----CCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHH
Confidence            344555544433     345677999999999999999998876 89999999998844

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=92.30  E-value=0.78  Score=42.81  Aligned_cols=37  Identities=16%  Similarity=0.064  Sum_probs=29.2

Q ss_pred             CEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           98 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        98 k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      ..+||+|||.|-.-+..|+.. -..+++.++...++..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~   87 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK   87 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH
Confidence            589999999998777777643 3589999998877643

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=92.29  E-value=0.25  Score=48.53  Aligned_cols=59  Identities=24%  Similarity=0.160  Sum_probs=35.7

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~  135 (330)
                      =|=-+..+..|+....    ....+.+|||||||-|-=-.=-...+++.++++|++.+.|+.+
T Consensus        43 NwvKs~LI~~~~~~~~----~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea  101 (331)
T PF03291_consen   43 NWVKSVLIQKYAKKVK----QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEA  101 (331)
T ss_dssp             HHHHHHHHHHHCHCCC----CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh----ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence            3555555555554221    1127889999999987433333456788999999999998664

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=92.21  E-value=4.1  Score=31.10  Aligned_cols=33  Identities=33%  Similarity=0.465  Sum_probs=24.5

Q ss_pred             EEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHH
Q 020125          100 VLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIR  133 (330)
Q Consensus       100 VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~  133 (330)
                      ++|+|||+|... .+.....  ..+++.|.++.++.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~   86 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLA   86 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHH
Confidence            999999999876 3333322  37888999998874

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=92.18  E-value=0.15  Score=47.30  Aligned_cols=35  Identities=29%  Similarity=0.435  Sum_probs=28.5

Q ss_pred             CCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHH
Q 020125           97 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAET  131 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~v  131 (330)
                      +++++|+|+|.|+|||.++. .-..+|++.|-+..=
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk  103 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKK  103 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchH
Confidence            79999999999999999774 333469999987763

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=92.16  E-value=3.3  Score=38.50  Aligned_cols=65  Identities=25%  Similarity=0.425  Sum_probs=46.4

Q ss_pred             CCCCccEEEEeccccCcccHHH---HHHHHHHHcCCCCcE-----EEEE------eccccccccccHHHHHHhhhhcCce
Q 020125          246 GEGGYDVILLTEIPYSVTSLKK---LYLLIKKCLRPPYGV-----VYLA------TKKNYVGFNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       246 ~~~~fDvILasD~iY~~~~~~~---L~~~i~~~L~~p~Gv-----~~lA------~k~~yfGv~gg~~~F~~~vee~G~f  311 (330)
                      ..++||+|..|=++-.......   .+.-..++|+ ++|.     .+|.      +..+|+    ....|...|+.-|+.
T Consensus       101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~~Cv~NSRy~----~~~~l~~im~~LGf~  175 (219)
T PF11968_consen  101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPLPCVTNSRYM----TEERLREIMESLGFT  175 (219)
T ss_pred             cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCccCcceEEEEeCchHhhccccc----CHHHHHHHHHhCCcE
Confidence            3578999999999876665543   3444445786 6677     6665      467776    468999999999986


Q ss_pred             eEEE
Q 020125          312 GAHL  315 (330)
Q Consensus       312 ~~~~  315 (330)
                      .++.
T Consensus       176 ~~~~  179 (219)
T PF11968_consen  176 RVKY  179 (219)
T ss_pred             EEEE
Confidence            5543

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=92.01  E-value=0.64  Score=42.64  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=30.1

Q ss_pred             EEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHH
Q 020125          100 VLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC  134 (330)
Q Consensus       100 VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~  134 (330)
                      |.|+||-.|.+++++++.|. .+|+++|+++.-++.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~   36 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEK   36 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHH
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence            68999999999999998775 579999999998854

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=91.73  E-value=0.23  Score=50.62  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=32.5

Q ss_pred             EEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           99 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        99 ~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .||++|.||||+++.|++.||..|++++.=.-|..+
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~  104 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDL  104 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHH
Confidence            699999999999999999999999999887767655

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=91.17  E-value=0.86  Score=39.59  Aligned_cols=39  Identities=13%  Similarity=0.120  Sum_probs=32.2

Q ss_pred             CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      .+.||+|+++-++-+.......++-+.+.|+ |+|.+++.
T Consensus        42 ~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~   80 (160)
T PLN02232         42 DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-PGSRVSIL   80 (160)
T ss_pred             CCCeeEEEecchhhcCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence            4689999999888777777888888888996 88988765

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.04  E-value=2.1  Score=39.85  Aligned_cols=47  Identities=21%  Similarity=0.223  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHH-HcCCC--eEEEEeCChHHHHHhhHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFAC-LKGAG--TVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~-~~ga~--~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      ..+|.+.|++|+|+|.++-.++ ..|+.  .+++.|+-+++++. .+.|+.
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~-Sk~nl~  129 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEY-SKKNLD  129 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHH-HHHHHH
Confidence            4689999999999997765544 44443  34999999998865 234443

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=90.94  E-value=2.9  Score=40.25  Aligned_cols=64  Identities=16%  Similarity=0.207  Sum_probs=41.9

Q ss_pred             CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEE
Q 020125          247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~  315 (330)
                      ++..||.+-+=-+--.+. ..++.-..+.|+ ++|.+|||--+.+|-   .+..|.+.+...||...+.
T Consensus       226 d~svDvaV~CLSLMgtn~-~df~kEa~RiLk-~gG~l~IAEv~SRf~---dv~~f~r~l~~lGF~~~~~  289 (325)
T KOG3045|consen  226 DESVDVAVFCLSLMGTNL-ADFIKEANRILK-PGGLLYIAEVKSRFS---DVKGFVRALTKLGFDVKHK  289 (325)
T ss_pred             cCcccEEEeeHhhhcccH-HHHHHHHHHHhc-cCceEEEEehhhhcc---cHHHHHHHHHHcCCeeeeh
Confidence            345666655444433333 334444666786 999999997666664   4566999999999865443

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=90.86  E-value=0.28  Score=50.66  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=47.5

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .+.+|-.++.+..    ..-.++.++|+=||||+.|+.+++ |+++|++.+++++.++-. ..|.+.|
T Consensus       367 ~aevLys~i~e~~----~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA-~~nA~~N  428 (534)
T KOG2187|consen  367 AAEVLYSTIGEWA----GLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDA-EKNAQIN  428 (534)
T ss_pred             HHHHHHHHHHHHh----CCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchh-hhcchhc
Confidence            4466667777653    233568999999999999999986 588999999999998653 4555555

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=90.71  E-value=0.53  Score=41.32  Aligned_cols=52  Identities=23%  Similarity=0.204  Sum_probs=37.1

Q ss_pred             hHHHHHHHHhhhhhcCCCCC-CCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChH
Q 020125           76 SSIDLVNVLKHEIRDGQLSF-RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAE  130 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~-~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~  130 (330)
                      |+.-|.+.+....   .... .+.+||||||++|-.+-++...+  +.+|++.|..+.
T Consensus         5 a~~KL~ei~~~~~---~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    5 AAFKLYEIDEKFK---IFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             HHHHHHHHHHTTS---SS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHHHHHCC---CCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            4455666665431   1122 45899999999999999998887  679999999875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=90.23  E-value=4  Score=40.21  Aligned_cols=162  Identities=18%  Similarity=0.232  Sum_probs=87.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      ..-+||-=|||.|.++.-++..|. ++-+-+.+-.|+   +-.+..+|..+..+.-             .+-|=||-++-
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Ml---i~S~FiLN~~~~~nq~-------------~IYPfIh~~sn  212 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFML---ICSSFILNYCKQENQF-------------TIYPFIHQYSN  212 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHH---HHHHHHHHhhccCCcE-------------EEEeeeecccc
Confidence            344899999999999998888886 456556666666   4478888876532210             12233444455


Q ss_pred             ccCCCcchhhhhccccccc-cccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcc----cccCCCCc
Q 020125          176 DWEELPTVLSVVRNDVSEV-TTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASE----ADQGEGGY  250 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~-~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~----~~~~~~~f  250 (330)
                      .|.-.+.+.++--+|..-. +.+..-+|                                .-|...+-    .....+.|
T Consensus       213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~f--------------------------------sicaGDF~evy~~s~~~~~~  260 (369)
T KOG2798|consen  213 SLSRDDQLRPISIPDIHPASSNGNTGSF--------------------------------SICAGDFLEVYGTSSGAGSY  260 (369)
T ss_pred             ccccccccccccCccccccccCCCCCCc--------------------------------cccccceeEEecCcCCCCcc
Confidence            5555444433111110000 00010111                                01322221    12344679


Q ss_pred             cEEEEeccccCccc---HHHHHHHHHHHcCCCCcEEE-EEeccccccccc----------cHHHHHHhhhhcCc
Q 020125          251 DVILLTEIPYSVTS---LKKLYLLIKKCLRPPYGVVY-LATKKNYVGFNN----------AARHLRSLVDEEGI  310 (330)
Q Consensus       251 DvILasD~iY~~~~---~~~L~~~i~~~L~~p~Gv~~-lA~k~~yfGv~g----------g~~~F~~~vee~G~  310 (330)
                      |+|+++   |..+.   .=..+++|.++|+ |+|+.. +.--.|.|--.+          +.......++..|+
T Consensus       261 d~VvTc---fFIDTa~NileYi~tI~~iLk-~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF  330 (369)
T KOG2798|consen  261 DVVVTC---FFIDTAHNILEYIDTIYKILK-PGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGF  330 (369)
T ss_pred             ceEEEE---EEeechHHHHHHHHHHHHhcc-CCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCc
Confidence            999999   44444   4456778888887 666533 344444443222          35566677777775

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=88.42  E-value=1.3  Score=43.05  Aligned_cols=40  Identities=13%  Similarity=-0.026  Sum_probs=33.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~  134 (330)
                      -+|..+||.+||.|--+..++...  ..+|++.|.++++++.
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~   59 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAA   59 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHH
Confidence            357799999999999998887653  3589999999999865

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.30  E-value=0.71  Score=45.45  Aligned_cols=40  Identities=33%  Similarity=0.408  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcccC-CHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGt-GL~gi~a~~-~ga~~V~~tD~~~~vl~~  134 (330)
                      -.|.+||-+|||. ||..+.+++ .||++|+++|..+.-|+.
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~  209 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLEL  209 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHH
Confidence            4688999999995 998877765 799999999999987754

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=88.20  E-value=1.3  Score=39.99  Aligned_cols=37  Identities=16%  Similarity=0.121  Sum_probs=28.2

Q ss_pred             CEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           98 KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        98 k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      ..+||+|||.|-.-+..|.. .-..+++.|+....+..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~   56 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAK   56 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHH
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHH
Confidence            38999999999888877653 34699999999988754

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=87.35  E-value=4.3  Score=40.87  Aligned_cols=41  Identities=27%  Similarity=0.272  Sum_probs=33.7

Q ss_pred             CCC-CEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           95 FRG-KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        95 ~~~-k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      +++ .+||-||-|-||..--..+. +..+|+..|.+|.|++..
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela  329 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELA  329 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHh
Confidence            344 48999999999887776665 478999999999999774

>PRK10742 putative methyltransferase; Provisional

Probab=87.13  E-value=1.5  Score=41.50  Aligned_cols=41  Identities=12%  Similarity=0.156  Sum_probs=34.8

Q ss_pred             EEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHH
Q 020125           99 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        99 ~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      +|||+-+|+|--|+.++..|++ |++.|.++.+... +..|+.
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaal-L~dgL~  131 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAAL-LDDGLA  131 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHH-HHHHHH
Confidence            8999999999999999999995 9999999987744 344444

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=87.02  E-value=4.9  Score=41.48  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-c-CCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACL-K-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~-~-ga~~V~~tD~~~~vl~~  134 (330)
                      -+|.+|||+.||.|-=+..++. . +...|++.|+++.=++.
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~  153 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKV  153 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence            3788999999999987766553 2 33589999999987754

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=86.42  E-value=1.3  Score=45.94  Aligned_cols=39  Identities=15%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC---------CCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG---------AGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g---------a~~V~~tD~~~~vl~~  134 (330)
                      ...+|||.+||+|...+.++...         ..++++.|+++.++..
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~   78 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKR   78 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHH
Confidence            45699999999998887776421         1578999999998865

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=85.82  E-value=2.6  Score=43.68  Aligned_cols=39  Identities=15%  Similarity=0.045  Sum_probs=30.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      .+..+||+|||.|-.-+..|.. --..+++.|.....+..
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~  386 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVAN  386 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHH
Confidence            4668999999999877776654 33589999998876643

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=83.07  E-value=31  Score=34.78  Aligned_cols=99  Identities=21%  Similarity=0.104  Sum_probs=60.5

Q ss_pred             cccCCCCCCCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCC------------
Q 020125           53 DIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAG------------  120 (330)
Q Consensus        53 ~~~g~~~~dl~~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~------------  120 (330)
                      |+.|.+=+..---.|.|+..+=   ..||..|....    ..-.+...+|-=||+|-+-|-||+.++.            
T Consensus       155 DttG~sLhkRGyR~~~g~ApLk---etLAaAil~la----gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~  227 (381)
T COG0116         155 DTTGDSLHKRGYRVYDGPAPLK---ETLAAAILLLA----GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFE  227 (381)
T ss_pred             eCCCcchhhccccccCCCCCch---HHHHHHHHHHc----CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchh
Confidence            4444432333333455544222   35555555331    2345578999999999999999887631            


Q ss_pred             ----------------------------eEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125          121 ----------------------------TVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus       121 ----------------------------~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                                                  .+++.|+++.+++.     .+.|...+                 .+...+.|
T Consensus       228 ~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~-----Ak~NA~~A-----------------Gv~d~I~f  285 (381)
T COG0116         228 FWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG-----AKANARAA-----------------GVGDLIEF  285 (381)
T ss_pred             hhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH-----HHHHHHhc-----------------CCCceEEE
Confidence                                        37799999999966     34565432                 23456777


Q ss_pred             eecccCCC
Q 020125          173 YAGDWEEL  180 (330)
Q Consensus       173 ~~gdW~~~  180 (330)
                      ..+|-..+
T Consensus       286 ~~~d~~~l  293 (381)
T COG0116         286 KQADATDL  293 (381)
T ss_pred             EEcchhhC
Confidence            77775443

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=82.93  E-value=1.1  Score=43.84  Aligned_cols=75  Identities=21%  Similarity=0.246  Sum_probs=55.3

Q ss_pred             cccchhHHHHHHHH--hhhhhcCCCCCCCCEEEEEcccCCHHHH-HHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHH
Q 020125           71 LKCWESSIDLVNVL--KHEIRDGQLSFRGKRVLELSCGYGLPGI-FACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ  146 (330)
Q Consensus        71 ~k~W~ss~~La~~l--~~~~~~~~~~~~~k~VLELGcGtGL~gi-~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~  146 (330)
                      ..+|+....|=.+=  .+..+-....-.|..|.||=+|-|-..+ +...+||+.|++.|.||..++. ++.|++.|...
T Consensus       167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEa-LrR~~~~N~V~  244 (351)
T KOG1227|consen  167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEA-LRRNAEANNVM  244 (351)
T ss_pred             EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHH-HHHHHHhcchH
Confidence            34888776654321  1111112345567889999999999888 7888999999999999999987 57899998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	4e-10
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	5e-04
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	5e-04

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 58.7 bits (141), Expect = 4e-10
 Identities = 28/121 (23%), Positives = 38/121 (31%), Gaps = 12/121 (9%)

Query: 71  LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAE 130
              W  +      L   +        GK V EL  G GL  I A L GA  V   D    
Sbjct: 58  SHVWSGAR----ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPD- 112

Query: 131 TIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRND 190
                  P +L +LE      +    SS T  R +     + +    + L     + R  
Sbjct: 113 -------PEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQ 165

Query: 191 V 191
           V
Sbjct: 166 V 166

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 26/87 (29%)

Query: 95  FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 154
           F  K VL+L CG+G   I+A   GA  V   DLS               L +A+ + +  
Sbjct: 43  FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERM------------LTEAKRKTT-- 88

Query: 155 PESSLTPSRQTLAPSVHFYAGDWEELP 181
                       +P V +     E++ 
Sbjct: 89  ------------SPVVCYEQKAIEDIA 103

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 22/90 (24%)

Query: 92  QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQ 151
           +        +++  G G   I    +   ++   D S                E A +  
Sbjct: 39  RFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHM------------NEIALKNI 86

Query: 152 SRQPESSLTPSRQTLAPSVHFYAGDWEELP 181
           +             L   +    GD   +P
Sbjct: 87  ADAN----------LNDRIQIVQGDVHNIP 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.75
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.33
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.28
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.27
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.23
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.22
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.21
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.21
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.2
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.2
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.19
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.19
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.16
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.15
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.15
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.15
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.13
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.12
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.12
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.12
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.12
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.11
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.11
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.1
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.09
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.08
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.08
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.08
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.07
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.07
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.07
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.07
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.06
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.06
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.06
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.06
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.06
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.05
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.05
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.05
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.04
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.04
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.03
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.02
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.02
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.02
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.01
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.01
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.01
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.01
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.0
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.0
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.0
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.99
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.99
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.99
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.99
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.98
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.98
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.98
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.98
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.97
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.97
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.97
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.97
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.97
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.97
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.96
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.96
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.94
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.93
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.93
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.92
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.92
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.91
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.91
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.91
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.91
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.9
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.9
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.89
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.89
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.89
3ocj_A	305	Putative exported protein; structural genomics, PS	98.89
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.88
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.88
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.87
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.87
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.87
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.86
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.86
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.86
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.86
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.85
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.84
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.84
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.84
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.84
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.84
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.83
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.83
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.83
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.82
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.82
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.82
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.82
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.82
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.82
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.81
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.81
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.8
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.8
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.8
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.8
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.79
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.79
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.79
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.78
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.78
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.78
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.78
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.78
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.77
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.77
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.77
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.76
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.76
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.76
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.76
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.76
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.76
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.75
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.75
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.75
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.74
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.73
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.73
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.73
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.72
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.7
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.69
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.69
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.68
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.68
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.66
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.64
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.64
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.64
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.64
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.63
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.63
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.62
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.62
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.62
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.62
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.62
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.62
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.61
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.61
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.6
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.6
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.59
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.58
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.57
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.57
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.57
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.56
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.56
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.56
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.56
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.56
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.55
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.55
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.55
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.53
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.52
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.52
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.52
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.51
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.51
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.51
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.51
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.49
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.49
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.48
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.47
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.47
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.47
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.46
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.46
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.45
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.45
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.44
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.44
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.43
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.43
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.43
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.43
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.42
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.42
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.41
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.41
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.4
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.4
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.39
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.39
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.39
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.38
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.37
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.36
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.35
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.34
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.33
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.33
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.32
2o07_A	304	Spermidine synthase; structural genomics, structur	98.31
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.26
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.25
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.25
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.21
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.21
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.21
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.2
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.19
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.16
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.14
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.14
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.13
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.12
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.11
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.11
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.1
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.08
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.08
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.08
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.06
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.05
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.04
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.04
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.04
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.03
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.01
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.0
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.0
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.0
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.99
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.98
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.97
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.96
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.96
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.9
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.88
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.77
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.67
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.66
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.65
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.58
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.55
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.55
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.46
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.4
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.39
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.35
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.34
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.33
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.12
3lkd_A	542	Type I restriction-modification system methyltrans	97.06
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.94
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.94
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	96.92
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	96.88
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.86
3khk_A	544	Type I restriction-modification system methylation	96.77
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.76
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	96.74
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.64
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.54
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.53
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.43
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	96.41
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	96.36
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.25
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.9
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	92.09
3ufb_A	530	Type I restriction-modification system methyltran	91.86
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	91.09
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	90.66
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	90.32
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	88.32
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	87.7
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	87.36
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	86.82
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	86.17
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	85.64
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	84.74
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	81.12
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	80.07

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.75  E-value=2.4e-17  Score=153.89  Aligned_cols=174  Identities=21%  Similarity=0.222  Sum_probs=117.0

Q ss_pred             CCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeC-ChHHHHHhhHHHHHHHHH
Q 020125           67 PDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL-SAETIRCTTVPNVLANLE  145 (330)
Q Consensus        67 y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~-~~~vl~~~t~pNv~~N~~  145 (330)
                      ++ |+.+|+++..|++++.+..    ...++++|||||||+|..++.+++.|+++|+++|+ ++.+++. .+.|+.+|..
T Consensus        55 ~~-g~~~~~~~~~l~~~l~~~~----~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~-a~~n~~~N~~  128 (281)
T 3bzb_A           55 LW-TSHVWSGARALADTLCWQP----ELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNS-LESNIREHTA  128 (281)
T ss_dssp             --------CHHHHHHHHHHHCG----GGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHH-HHHHHHTTCC
T ss_pred             CC-CceeecHHHHHHHHHHhcc----hhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHH-HHHHHHHhhh
Confidence            45 5679999999999999764    34688999999999999999999988889999999 8999865 3556644421


Q ss_pred             HhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcc-hhhhhccccccccccccccccccccccCCCCCCCcccccCCc
Q 020125          146 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPT-VLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSS  224 (330)
Q Consensus       146 ~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~-~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~  224 (330)
                      ..    .     .+..   .-..++++..++|+.... +..                                       
T Consensus       129 ~~----~-----~~~~---~~~~~v~~~~~~~~~~~~~~~~---------------------------------------  157 (281)
T 3bzb_A          129 NS----C-----SSET---VKRASPKVVPYRWGDSPDSLQR---------------------------------------  157 (281)
T ss_dssp             ----------------------CCCEEEECCTTSCTHHHHH---------------------------------------
T ss_pred             hh----c-----cccc---CCCCCeEEEEecCCCccHHHHh---------------------------------------
Confidence            00    0     0000   001357777888887321 000                                       


Q ss_pred             ccccccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCC--C--CcEEEEEeccccccccccHHH
Q 020125          225 SRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRP--P--YGVVYLATKKNYVGFNNAARH  300 (330)
Q Consensus       225 ~~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~--p--~Gv~~lA~k~~yfGv~gg~~~  300 (330)
                                         ....++||+|+++|++|....++.+++.+.++|+.  |  +|++|+....++.........
T Consensus       158 -------------------~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~  218 (281)
T 3bzb_A          158 -------------------CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLA  218 (281)
T ss_dssp             -------------------HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTH
T ss_pred             -------------------hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHH
Confidence                               00236899999999999999999999999999961  4  899988876665444455788


Q ss_pred             HHHhhhhcCceeEEEE
Q 020125          301 LRSLVDEEGIFGAHLI  316 (330)
Q Consensus       301 F~~~vee~G~f~~~~~  316 (330)
                      |++.+++.|.|.+..+
T Consensus       219 ~~~~l~~~G~f~v~~~  234 (281)
T 3bzb_A          219 FFRLVNADGALIAEPW  234 (281)
T ss_dssp             HHHHHHHSTTEEEEEE
T ss_pred             HHHHHHhcCCEEEEEe
Confidence            9999999983455443

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.33  E-value=4e-12  Score=124.40  Aligned_cols=104  Identities=26%  Similarity=0.251  Sum_probs=80.1

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      ..|+||+|||+|||+|+++++|+++||++|++.|.++ +++. .+.|+..|.                     +..+|.+
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~-a~~~~~~n~---------------------~~~~i~~  136 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQ-AREVVRFNG---------------------LEDRVHV  136 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHH-HHHHHHHTT---------------------CTTTEEE
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHH-HHHHHHHcC---------------------CCceEEE
Confidence            4689999999999999999999999999999999986 6544 455666552                     3346777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..++-++..                                                                ...+||+
T Consensus       137 i~~~~~~~~----------------------------------------------------------------lpe~~Dv  152 (376)
T 4hc4_A          137 LPGPVETVE----------------------------------------------------------------LPEQVDA  152 (376)
T ss_dssp             EESCTTTCC----------------------------------------------------------------CSSCEEE
T ss_pred             Eeeeeeeec----------------------------------------------------------------CCccccE
Confidence            776643321                                                                1358999


Q ss_pred             EEE---eccccCcccHHHHHHHHHHHcCCCCcEEE
Q 020125          253 ILL---TEIPYSVTSLKKLYLLIKKCLRPPYGVVY  284 (330)
Q Consensus       253 ILa---sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~  284 (330)
                      |++   ...+..+..++.++...+++|+ |+|+++
T Consensus       153 ivsE~~~~~l~~e~~l~~~l~a~~r~Lk-p~G~~i  186 (376)
T 4hc4_A          153 IVSEWMGYGLLHESMLSSVLHARTKWLK-EGGLLL  186 (376)
T ss_dssp             EECCCCBTTBTTTCSHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEeecccccccccchhhhHHHHHHhhCC-CCceEC
Confidence            987   6677778899999999999997 667544

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.28  E-value=4.4e-11  Score=103.79  Aligned_cols=131  Identities=18%  Similarity=0.223  Sum_probs=87.8

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      .++....+.+.+.+.+... ...++++|||+|||+|..++.++..++.+|++.|+++.+++.+ +.|+..|.        
T Consensus        22 ~rp~~~~~~~~l~~~l~~~-~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a-~~~~~~~~--------   91 (189)
T 3p9n_A           22 TRPTTDRVRESLFNIVTAR-RDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVI-ARNIEALG--------   91 (189)
T ss_dssp             C---CHHHHHHHHHHHHHH-SCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHH-HHHHHHHT--------
T ss_pred             CccCcHHHHHHHHHHHHhc-cCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHH-HHHHHHcC--------
Confidence            4555555555555443211 1368899999999999999988888888999999999998652 34444331        


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                   + .++++..+|+.+...                                                  
T Consensus        92 -------------~-~~v~~~~~d~~~~~~--------------------------------------------------  107 (189)
T 3p9n_A           92 -------------L-SGATLRRGAVAAVVA--------------------------------------------------  107 (189)
T ss_dssp             -------------C-SCEEEEESCHHHHHH--------------------------------------------------
T ss_pred             -------------C-CceEEEEccHHHHHh--------------------------------------------------
Confidence                         2 357777777543210                                                  


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCc--ccHHHHHHHHHH--HcCCCCcEEEEEeccc
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKK--CLRPPYGVVYLATKKN  290 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~--~~~~~L~~~i~~--~L~~p~Gv~~lA~k~~  290 (330)
                                 .....+||+|++.- .|..  +....+++.+.+  +|+ |+|++++.....
T Consensus       108 -----------~~~~~~fD~i~~~~-p~~~~~~~~~~~l~~~~~~~~L~-pgG~l~~~~~~~  156 (189)
T 3p9n_A          108 -----------AGTTSPVDLVLADP-PYNVDSADVDAILAALGTNGWTR-EGTVAVVERATT  156 (189)
T ss_dssp             -----------HCCSSCCSEEEECC-CTTSCHHHHHHHHHHHHHSSSCC-TTCEEEEEEETT
T ss_pred             -----------hccCCCccEEEECC-CCCcchhhHHHHHHHHHhcCccC-CCeEEEEEecCC
Confidence                       01246899998854 4655  567788888887  786 899999876543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.27  E-value=5.6e-11  Score=107.25  Aligned_cols=103  Identities=24%  Similarity=0.367  Sum_probs=80.5

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ..++++|||+|||+|..++.++..|+.+|+++|+++.+++.+     +.+..                     ..++.+.
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a-----~~~~~---------------------~~~~~~~   95 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEA-----KRKTT---------------------SPVVCYE   95 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHH-----HHHCC---------------------CTTEEEE
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHH-----HHhhc---------------------cCCeEEE
Confidence            457899999999999999999988888999999999988542     11110                     1356666


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|....+                                                               ...++||+|
T Consensus        96 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v  112 (253)
T 3g5l_A           96 QKAIEDIA---------------------------------------------------------------IEPDAYNVV  112 (253)
T ss_dssp             ECCGGGCC---------------------------------------------------------------CCTTCEEEE
T ss_pred             EcchhhCC---------------------------------------------------------------CCCCCeEEE
Confidence            66543211                                                               124689999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      ++..+++.......+++.+.++|+ |+|++++.
T Consensus       113 ~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~  144 (253)
T 3g5l_A          113 LSSLALHYIASFDDICKKVYINLK-SSGSFIFS  144 (253)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EEchhhhhhhhHHHHHHHHHHHcC-CCcEEEEE
Confidence            999999999889999999999997 89999887

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.23  E-value=2e-10  Score=100.01  Aligned_cols=159  Identities=16%  Similarity=0.244  Sum_probs=105.5

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCC
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS  158 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~  158 (330)
                      .+++.+.+..     ..++.+|||+|||+|..++.++.....+|+++|+++.+++.+     ..|+...           
T Consensus        31 ~~~~~~~~~~-----~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a-----~~~~~~~-----------   89 (219)
T 3dlc_A           31 IIAENIINRF-----GITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIA-----LKNIADA-----------   89 (219)
T ss_dssp             HHHHHHHHHH-----CCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHH-----HHHHHHT-----------
T ss_pred             HHHHHHHHhc-----CCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHH-----HHHHHhc-----------
Confidence            4555555443     233449999999999999988876345899999999998552     3333211           


Q ss_pred             CCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 020125          159 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE  238 (330)
Q Consensus       159 ~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~  238 (330)
                            .+..++++..+|..+.+                                                         
T Consensus        90 ------~~~~~~~~~~~d~~~~~---------------------------------------------------------  106 (219)
T 3dlc_A           90 ------NLNDRIQIVQGDVHNIP---------------------------------------------------------  106 (219)
T ss_dssp             ------TCTTTEEEEECBTTBCS---------------------------------------------------------
T ss_pred             ------cccCceEEEEcCHHHCC---------------------------------------------------------
Confidence                  12345777776654321                                                         


Q ss_pred             hhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc---------------cc---------cc
Q 020125          239 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN---------------YV---------GF  294 (330)
Q Consensus       239 ~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~---------------yf---------Gv  294 (330)
                            ...+.||+|++..+++.......+++.+.++|+ |+|++++.....               +.         ..
T Consensus       107 ------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (219)
T 3dlc_A          107 ------IEDNYADLIVSRGSVFFWEDVATAFREIYRILK-SGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNIS  179 (219)
T ss_dssp             ------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSS
T ss_pred             ------CCcccccEEEECchHhhccCHHHHHHHHHHhCC-CCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccc
Confidence                  124689999999999999899999999999997 899998863110               00         00


Q ss_pred             cccHHHHHHhhhhcCceeEEEEeecCCcceeeeecC
Q 020125          295 NNAARHLRSLVDEEGIFGAHLIKEMTDRDIWKFFLK  330 (330)
Q Consensus       295 ~gg~~~F~~~vee~G~f~~~~~~e~~d~~i~~~~~~  330 (330)
                      .-...++.+++++.|+-.+++...  +...|-.+.|
T Consensus       180 ~~~~~~~~~~l~~aGf~~v~~~~~--~~~~~~~~~k  213 (219)
T 3dlc_A          180 QENVERFQNVLDEIGISSYEIILG--DEGFWIIISK  213 (219)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEE--TTEEEEEEBC
T ss_pred             cCCHHHHHHHHHHcCCCeEEEEec--CCceEEEEec
Confidence            014578889999999755554332  3445655443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.22  E-value=3.3e-10  Score=99.63  Aligned_cols=139  Identities=16%  Similarity=0.216  Sum_probs=97.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      -++++|||+|||+|..++.++..+  ..+|++.|+++.+++.+     +.|....                 .+ +++.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a-----~~~~~~~-----------------~~-~~~~~   92 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYA-----WEKVNKL-----------------GL-KNVEV   92 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHH-----HHHHHHH-----------------TC-TTEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHH-----HHHHHHc-----------------CC-CcEEE
Confidence            468899999999999999888765  35999999999998552     3333211                 01 24666


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|....+                                                               ...++||+
T Consensus        93 ~~~d~~~~~---------------------------------------------------------------~~~~~fD~  109 (219)
T 3dh0_A           93 LKSEENKIP---------------------------------------------------------------LPDNTVDF  109 (219)
T ss_dssp             EECBTTBCS---------------------------------------------------------------SCSSCEEE
T ss_pred             EecccccCC---------------------------------------------------------------CCCCCeeE
Confidence            666654321                                                               12368999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccc---c----ccccHHHHHHhhhhcCceeEEEEeecCC
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV---G----FNNAARHLRSLVDEEGIFGAHLIKEMTD  321 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yf---G----v~gg~~~F~~~vee~G~f~~~~~~e~~d  321 (330)
                      |++..+++.......+++.+.++|+ |+|++++..-....   +    ..-...++.+++++.|+-..+. ....+
T Consensus       110 v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~-~~~~~  183 (219)
T 3dh0_A          110 IFMAFTFHELSEPLKFLEELKRVAK-PFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV-VEVGK  183 (219)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHHEE-EEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE-EEETT
T ss_pred             EEeehhhhhcCCHHHHHHHHHHHhC-CCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE-EeeCC
Confidence            9999999999888999999999997 88998887421110   0    0115789999999999633333 44433

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.21  E-value=2.8e-10  Score=103.78  Aligned_cols=134  Identities=16%  Similarity=0.163  Sum_probs=97.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .-++++|||+|||+|..++.++..+..+|+++|+++.+++.     .+.|....                 .+.+++++.
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~  101 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDI-----FNRNARQS-----------------GLQNRVTGI  101 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHH-----HHHHHHHc-----------------CCCcCcEEE
Confidence            34688999999999999999988876799999999998855     23333211                 133468888


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|+.+.+                                                               ...++||+|
T Consensus       102 ~~d~~~~~---------------------------------------------------------------~~~~~fD~i  118 (267)
T 3kkz_A          102 VGSMDDLP---------------------------------------------------------------FRNEELDLI  118 (267)
T ss_dssp             ECCTTSCC---------------------------------------------------------------CCTTCEEEE
T ss_pred             EcChhhCC---------------------------------------------------------------CCCCCEEEE
Confidence            87765421                                                               023689999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc---------------ccccccHHHHHHhhhhcCceeEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY---------------VGFNNAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y---------------fGv~gg~~~F~~~vee~G~f~~~  314 (330)
                      ++..+++.. ....+++.+.++|+ |+|++++......               +..-....++.+.+++.|+-.++
T Consensus       119 ~~~~~~~~~-~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  192 (267)
T 3kkz_A          119 WSEGAIYNI-GFERGLNEWRKYLK-KGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVA  192 (267)
T ss_dssp             EESSCGGGT-CHHHHHHHHGGGEE-EEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEE
T ss_pred             EEcCCceec-CHHHHHHHHHHHcC-CCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEE
Confidence            999999988 67888888888997 8999888753210               11112567788899999964333

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.21  E-value=2.6e-10  Score=104.32  Aligned_cols=146  Identities=10%  Similarity=0.123  Sum_probs=97.8

Q ss_pred             CcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhh
Q 020125           70 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARE  149 (330)
Q Consensus        70 g~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~  149 (330)
                      +++...-+..|+.++.       ..+++++|||+|||+|..++.++..+..+|+++|+++.+++.+ ..|+..|.     
T Consensus        30 ~~~~~~d~~ll~~~~~-------~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a-~~n~~~~~-----   96 (259)
T 3lpm_A           30 VFSFSIDAVLLAKFSY-------LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMA-KRSVAYNQ-----   96 (259)
T ss_dssp             TBCCCHHHHHHHHHCC-------CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHH-HHHHHHTT-----
T ss_pred             CccCcHHHHHHHHHhc-------CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHH-HHHHHHCC-----
Confidence            4444444666666652       1236889999999999999999988777999999999998653 44444331     


Q ss_pred             hhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccc
Q 020125          150 RQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSR  229 (330)
Q Consensus       150 ~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~  229 (330)
                                      +..++++..+|..+...                                               
T Consensus        97 ----------------~~~~v~~~~~D~~~~~~-----------------------------------------------  113 (259)
T 3lpm_A           97 ----------------LEDQIEIIEYDLKKITD-----------------------------------------------  113 (259)
T ss_dssp             ----------------CTTTEEEECSCGGGGGG-----------------------------------------------
T ss_pred             ----------------CcccEEEEECcHHHhhh-----------------------------------------------
Confidence                            23457777777544210                                               


Q ss_pred             cccCchhhhhhcccccCCCCccEEEEeccccCc--------------------ccHHHHHHHHHHHcCCCCcEEEEEecc
Q 020125          230 KLSGSRAWERASEADQGEGGYDVILLTEIPYSV--------------------TSLKKLYLLIKKCLRPPYGVVYLATKK  289 (330)
Q Consensus       230 ~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~--------------------~~~~~L~~~i~~~L~~p~Gv~~lA~k~  289 (330)
                                    ....++||+|++.-..|..                    ..++.+++.+.++|+ |+|++++....
T Consensus       114 --------------~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  178 (259)
T 3lpm_A          114 --------------LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK-QGGKANFVHRP  178 (259)
T ss_dssp             --------------TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEE-EEEEEEEEECT
T ss_pred             --------------hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHcc-CCcEEEEEEcH
Confidence                          0124689999874333322                    235568888888896 89999986543


Q ss_pred             ccccccccHHHHHHhhhhcCcee
Q 020125          290 NYVGFNNAARHLRSLVDEEGIFG  312 (330)
Q Consensus       290 ~yfGv~gg~~~F~~~vee~G~f~  312 (330)
                      .      ...+++..+++.|+..
T Consensus       179 ~------~~~~~~~~l~~~~~~~  195 (259)
T 3lpm_A          179 E------RLLDIIDIMRKYRLEP  195 (259)
T ss_dssp             T------THHHHHHHHHHTTEEE
T ss_pred             H------HHHHHHHHHHHCCCce
Confidence            2      4677888898888643

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.20  E-value=1.5e-09  Score=94.94  Aligned_cols=126  Identities=11%  Similarity=0.061  Sum_probs=91.5

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .-++.+|||+|||+|..++.++..+ ..+|+++|+++++++.+ ..|+..|.                     + .++++
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a-~~~~~~~~---------------------~-~~v~~   94 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFI-RDNLKKFV---------------------A-RNVTL   94 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHH-HHHHHHHT---------------------C-TTEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHH-HHHHHHhC---------------------C-CcEEE
Confidence            3468899999999999999988876 46999999999998653 34443331                     1 34666


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|+.+..                                                               .....||+
T Consensus        95 ~~~d~~~~~---------------------------------------------------------------~~~~~~D~  111 (204)
T 3e05_A           95 VEAFAPEGL---------------------------------------------------------------DDLPDPDR  111 (204)
T ss_dssp             EECCTTTTC---------------------------------------------------------------TTSCCCSE
T ss_pred             EeCChhhhh---------------------------------------------------------------hcCCCCCE
Confidence            666643310                                                               01256999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~  315 (330)
                      |+.....+   ....+++.+.+.|+ |+|++++.....     .....+.+.+++.|+ ..++
T Consensus       112 i~~~~~~~---~~~~~l~~~~~~Lk-pgG~l~~~~~~~-----~~~~~~~~~l~~~g~-~~~~  164 (204)
T 3e05_A          112 VFIGGSGG---MLEEIIDAVDRRLK-SEGVIVLNAVTL-----DTLTKAVEFLEDHGY-MVEV  164 (204)
T ss_dssp             EEESCCTT---CHHHHHHHHHHHCC-TTCEEEEEECBH-----HHHHHHHHHHHHTTC-EEEE
T ss_pred             EEECCCCc---CHHHHHHHHHHhcC-CCeEEEEEeccc-----ccHHHHHHHHHHCCC-ceeE
Confidence            99888776   67788888888896 899999875432     367888999999996 5443

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.20  E-value=7.8e-10  Score=99.56  Aligned_cols=149  Identities=17%  Similarity=0.158  Sum_probs=102.3

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccC
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ  154 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~  154 (330)
                      +....+...+....   ...-++.+|||+|||+|..++.++..+..+|+++|+++.+++.     ...|....       
T Consensus        28 ~~~~~~~~~~l~~l---~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~-------   92 (257)
T 3f4k_A           28 PGSPEATRKAVSFI---NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEI-----FNENAVKA-------   92 (257)
T ss_dssp             SCCHHHHHHHHTTS---CCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHH-----HHHHHHHT-------
T ss_pred             CCCHHHHHHHHHHH---hcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHH-----HHHHHHHc-------
Confidence            33444555554432   1234678999999999999999888765699999999999855     23333211       


Q ss_pred             CCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 020125          155 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS  234 (330)
Q Consensus       155 ~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~  234 (330)
                                .+..++++..+|+...+                                                     
T Consensus        93 ----------~~~~~~~~~~~d~~~~~-----------------------------------------------------  109 (257)
T 3f4k_A           93 ----------NCADRVKGITGSMDNLP-----------------------------------------------------  109 (257)
T ss_dssp             ----------TCTTTEEEEECCTTSCS-----------------------------------------------------
T ss_pred             ----------CCCCceEEEECChhhCC-----------------------------------------------------
Confidence                      12345777777764421                                                     


Q ss_pred             hhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc----------------cccccccH
Q 020125          235 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGFNNAA  298 (330)
Q Consensus       235 ~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~----------------yfGv~gg~  298 (330)
                                ...++||+|++..+++.. ..+.+++.+.++|+ |+|++++.....                |.+ -...
T Consensus       110 ----------~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  176 (257)
T 3f4k_A          110 ----------FQNEELDLIWSEGAIYNI-GFERGMNEWSKYLK-KGGFIAVSEASWFTSERPAEIEDFWMDAYPE-ISVI  176 (257)
T ss_dssp             ----------SCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEE-EEEEEEEEEEEESSSCCCHHHHHHHHHHCTT-CCBH
T ss_pred             ----------CCCCCEEEEEecChHhhc-CHHHHHHHHHHHcC-CCcEEEEEEeeccCCCChHHHHHHHHHhCCC-CCCH
Confidence                      123689999999999998 57888888998997 899998875211                111 1256


Q ss_pred             HHHHHhhhhcCceeEE
Q 020125          299 RHLRSLVDEEGIFGAH  314 (330)
Q Consensus       299 ~~F~~~vee~G~f~~~  314 (330)
                      .++.+++++.|+-.++
T Consensus       177 ~~~~~~l~~aGf~~v~  192 (257)
T 3f4k_A          177 PTCIDKMERAGYTPTA  192 (257)
T ss_dssp             HHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHCCCeEEE
Confidence            7888999999964333

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.19  E-value=1.2e-09  Score=99.41  Aligned_cols=149  Identities=21%  Similarity=0.201  Sum_probs=103.9

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      .-++...+++.+.+..    ...++.+|||+|||+|..++.++.....+|+++|+++.+++..     +.+....     
T Consensus        42 ~~~~~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a-----~~~~~~~-----  107 (273)
T 3bus_A           42 VDDATDRLTDEMIALL----DVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQA-----NARATAA-----  107 (273)
T ss_dssp             HHHHHHHHHHHHHHHS----CCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHH-----HHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHH-----HHHHHhc-----
Confidence            4455566667666553    2357889999999999999988864345999999999988542     2232211     


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                  .+..++++..+|....+                                                   
T Consensus       108 ------------~~~~~~~~~~~d~~~~~---------------------------------------------------  124 (273)
T 3bus_A          108 ------------GLANRVTFSYADAMDLP---------------------------------------------------  124 (273)
T ss_dssp             ------------TCTTTEEEEECCTTSCC---------------------------------------------------
T ss_pred             ------------CCCcceEEEECccccCC---------------------------------------------------
Confidence                        12345777776654421                                                   


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc-------------------cc
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-------------------VG  293 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y-------------------fG  293 (330)
                                  ...++||+|++.++++.......+++.+.++|+ |+|++++..-...                   .+
T Consensus       125 ------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (273)
T 3bus_A          125 ------------FEDASFDAVWALESLHHMPDRGRALREMARVLR-PGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVL  191 (273)
T ss_dssp             ------------SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEE-EEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCC
T ss_pred             ------------CCCCCccEEEEechhhhCCCHHHHHHHHHHHcC-CCeEEEEEEeeccCCCChhHHHHHHHHHhhcCcc
Confidence                        123689999999999999888999999999996 8999887642110                   11


Q ss_pred             ccccHHHHHHhhhhcCce
Q 020125          294 FNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       294 v~gg~~~F~~~vee~G~f  311 (330)
                      ..-+..++.+++++.|+-
T Consensus       192 ~~~~~~~~~~~l~~aGf~  209 (273)
T 3bus_A          192 SLGGIDEYESDVRQAELV  209 (273)
T ss_dssp             CCCCHHHHHHHHHHTTCE
T ss_pred             CCCCHHHHHHHHHHcCCe
Confidence            123567888899999963

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.19  E-value=3.6e-10  Score=100.45  Aligned_cols=130  Identities=21%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             CCCCEEEEEccc-CCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCG-YGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcG-tGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      -++++|||+||| +|..++.++.....+|+++|+++.+++.     .+.|+..+                 .+  ++++.
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~-----a~~~~~~~-----------------~~--~v~~~  109 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEY-----ARRNIERN-----------------NS--NVRLV  109 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHH-----HHHHHHHT-----------------TC--CCEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHH-----HHHHHHHh-----------------CC--CcEEE
Confidence            368999999999 9999999888734599999999999865     33343321                 12  46777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|+.....                                                              ...++||+|
T Consensus       110 ~~d~~~~~~--------------------------------------------------------------~~~~~fD~I  127 (230)
T 3evz_A          110 KSNGGIIKG--------------------------------------------------------------VVEGTFDVI  127 (230)
T ss_dssp             ECSSCSSTT--------------------------------------------------------------TCCSCEEEE
T ss_pred             eCCchhhhh--------------------------------------------------------------cccCceeEE
Confidence            777643210                                                              012578988


Q ss_pred             EEeccccCcc--------------------cHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeE
Q 020125          254 LLTEIPYSVT--------------------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGA  313 (330)
Q Consensus       254 LasD~iY~~~--------------------~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~  313 (330)
                      ++ +..|...                    .+..+++.+.++|+ |+|++++.....+    .....+.+.+++.|+ ..
T Consensus       128 ~~-npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~----~~~~~~~~~l~~~g~-~~  200 (230)
T 3evz_A          128 FS-APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLN-PGGKVALYLPDKE----KLLNVIKERGIKLGY-SV  200 (230)
T ss_dssp             EE-CCCCC---------------CCSSSCHHHHHHHHHHGGGEE-EEEEEEEEEESCH----HHHHHHHHHHHHTTC-EE
T ss_pred             EE-CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhC-CCeEEEEEecccH----hHHHHHHHHHHHcCC-ce
Confidence            84 4444332                    24677777888886 8999888654332    356888999999986 55


Q ss_pred             EEEe
Q 020125          314 HLIK  317 (330)
Q Consensus       314 ~~~~  317 (330)
                      +.+.
T Consensus       201 ~~~~  204 (230)
T 3evz_A          201 KDIK  204 (230)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.16  E-value=6.7e-10  Score=99.19  Aligned_cols=138  Identities=14%  Similarity=0.056  Sum_probs=95.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .+++.+|||+|||+|..++.++..|+ +|+++|+++.+++.+     ..|....                 ....++.|.
T Consensus        64 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~~~~~-----------------~~~~~v~~~  120 (235)
T 3lcc_A           64 SLPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKA-----NETYGSS-----------------PKAEYFSFV  120 (235)
T ss_dssp             CSCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHH-----HHHHTTS-----------------GGGGGEEEE
T ss_pred             CCCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHH-----HHHhhcc-----------------CCCcceEEE
Confidence            34567999999999999998887766 799999999998542     3332210                 012356776


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|+.+.+                                                                ....||+|
T Consensus       121 ~~d~~~~~----------------------------------------------------------------~~~~fD~v  136 (235)
T 3lcc_A          121 KEDVFTWR----------------------------------------------------------------PTELFDLI  136 (235)
T ss_dssp             CCCTTTCC----------------------------------------------------------------CSSCEEEE
T ss_pred             ECchhcCC----------------------------------------------------------------CCCCeeEE
Confidence            66654311                                                                12489999


Q ss_pred             EEeccccCcc--cHHHHHHHHHHHcCCCCcEEEEEecccccc-----ccccHHHHHHhhhhcCceeEEEEeecC
Q 020125          254 LLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNYVG-----FNNAARHLRSLVDEEGIFGAHLIKEMT  320 (330)
Q Consensus       254 LasD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfG-----v~gg~~~F~~~vee~G~f~~~~~~e~~  320 (330)
                      ++..+++...  ....+++.+.++|+ |+|++++..-.....     ..-...++.+++++.|+ ....+.+.+
T Consensus       137 ~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf-~~~~~~~~~  208 (235)
T 3lcc_A          137 FDYVFFCAIEPEMRPAWAKSMYELLK-PDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGF-KAVSVEENP  208 (235)
T ss_dssp             EEESSTTTSCGGGHHHHHHHHHHHEE-EEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTE-EEEEEEECT
T ss_pred             EEChhhhcCCHHHHHHHHHHHHHHCC-CCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCC-eEEEEEecC
Confidence            9999998766  88899999999997 889988753211100     01257889999999996 444334433

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.15  E-value=7.7e-10  Score=99.53  Aligned_cols=135  Identities=17%  Similarity=0.070  Sum_probs=94.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ..++.+|||+|||+|..++.++.....+|+++|+++.+++.     .+.|....                 .+..++.|.
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~-----a~~~~~~~-----------------~~~~~v~~~   91 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQ-----AKRRAEEL-----------------GVSERVHFI   91 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHH-----HHHHHHhc-----------------CCCcceEEE
Confidence            45788999999999999988876533489999999999854     23333211                 123467777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|+.+.+                                                                ..+.||+|
T Consensus        92 ~~d~~~~~----------------------------------------------------------------~~~~fD~V  107 (256)
T 1nkv_A           92 HNDAAGYV----------------------------------------------------------------ANEKCDVA  107 (256)
T ss_dssp             ESCCTTCC----------------------------------------------------------------CSSCEEEE
T ss_pred             ECChHhCC----------------------------------------------------------------cCCCCCEE
Confidence            77754421                                                                13579999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc------------cc----ccccHHHHHHhhhhcCceeEEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY------------VG----FNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y------------fG----v~gg~~~F~~~vee~G~f~~~~  315 (330)
                      ++..+++.......+++-+.++|+ |+|++++......            .+    .-....++.+.+++.|+-..++
T Consensus       108 ~~~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  184 (256)
T 1nkv_A          108 ACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM  184 (256)
T ss_dssp             EEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred             EECCChHhcCCHHHHHHHHHHHcC-CCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence            999999988778888888888897 8999888642110            00    0124678889999999644443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.15  E-value=1.2e-09  Score=92.46  Aligned_cols=136  Identities=13%  Similarity=0.157  Sum_probs=95.1

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCC
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQP  155 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~  155 (330)
                      ....+.+++.+..    ...++.+|||+|||+|..++.++. +..+|+++|+++.+++.     ...|...+        
T Consensus        19 ~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~-----a~~~~~~~--------   80 (183)
T 2yxd_A           19 TKEEIRAVSIGKL----NLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEV-----TKQNLAKF--------   80 (183)
T ss_dssp             CCHHHHHHHHHHH----CCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHH-----HHHHHHHT--------
T ss_pred             CHHHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHH-----HHHHHHHc--------
Confidence            3445555565553    234788999999999999999988 56699999999999855     23343321        


Q ss_pred             CCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCch
Q 020125          156 ESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSR  235 (330)
Q Consensus       156 ~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~  235 (330)
                               .+ .++++..+|+.+ .                                                      
T Consensus        81 ---------~~-~~~~~~~~d~~~-~------------------------------------------------------   95 (183)
T 2yxd_A           81 ---------NI-KNCQIIKGRAED-V------------------------------------------------------   95 (183)
T ss_dssp             ---------TC-CSEEEEESCHHH-H------------------------------------------------------
T ss_pred             ---------CC-CcEEEEECCccc-c------------------------------------------------------
Confidence                     11 246666555432 0                                                      


Q ss_pred             hhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEE
Q 020125          236 AWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       236 ~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~  315 (330)
                               ...++||+|++..+    .....+++.+.++   |+|.+++.....     ....++.+.+++.| +..+.
T Consensus        96 ---------~~~~~~D~i~~~~~----~~~~~~l~~~~~~---~gG~l~~~~~~~-----~~~~~~~~~l~~~g-~~~~~  153 (183)
T 2yxd_A           96 ---------LDKLEFNKAFIGGT----KNIEKIIEILDKK---KINHIVANTIVL-----ENAAKIINEFESRG-YNVDA  153 (183)
T ss_dssp             ---------GGGCCCSEEEECSC----SCHHHHHHHHHHT---TCCEEEEEESCH-----HHHHHHHHHHHHTT-CEEEE
T ss_pred             ---------ccCCCCcEEEECCc----ccHHHHHHHHhhC---CCCEEEEEeccc-----ccHHHHHHHHHHcC-CeEEE
Confidence                     01258999999988    6677888888875   889998887432     35788999999999 56665


Q ss_pred             E
Q 020125          316 I  316 (330)
Q Consensus       316 ~  316 (330)
                      +
T Consensus       154 ~  154 (183)
T 2yxd_A          154 V  154 (183)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.15  E-value=1.8e-09  Score=101.21  Aligned_cols=130  Identities=15%  Similarity=0.122  Sum_probs=94.3

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .-++.+|||+|||+|..++.++.. |+ +|++.|+++.+++.     .+.|...+                 .+..++.|
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~  171 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADF-----GNRRAREL-----------------RIDDHVRS  171 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHH-----HHHHHHHc-----------------CCCCceEE
Confidence            346889999999999999988876 65 89999999999855     23333221                 13346777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+.+                                                               ...++||+
T Consensus       172 ~~~d~~~~~---------------------------------------------------------------~~~~~fD~  188 (312)
T 3vc1_A          172 RVCNMLDTP---------------------------------------------------------------FDKGAVTA  188 (312)
T ss_dssp             EECCTTSCC---------------------------------------------------------------CCTTCEEE
T ss_pred             EECChhcCC---------------------------------------------------------------CCCCCEeE
Confidence            777754421                                                               12368999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc-----------------cccccccHHHHHHhhhhcCce
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-----------------YVGFNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~-----------------yfGv~gg~~~F~~~vee~G~f  311 (330)
                      |++.++++..+ ...+++.+.++|+ |+|++++.....                 |+.-.....++.+++++.|+-
T Consensus       189 V~~~~~l~~~~-~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~  262 (312)
T 3vc1_A          189 SWNNESTMYVD-LHDLFSEHSRFLK-VGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLV  262 (312)
T ss_dssp             EEEESCGGGSC-HHHHHHHHHHHEE-EEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEE
T ss_pred             EEECCchhhCC-HHHHHHHHHHHcC-CCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCE
Confidence            99999999885 8889999999997 899988875211                 111122578888999999963

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.13  E-value=1.9e-09  Score=96.98  Aligned_cols=143  Identities=15%  Similarity=0.160  Sum_probs=101.2

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      .|+...-+.+.+.        .-++++|||+|||+|..++.++..+. +|+++|+++.+++.+     ..|....     
T Consensus         6 ~~~~~~~~~~~~~--------~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~~~~-----   66 (239)
T 1xxl_A            6 HHHSLGLMIKTAE--------CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVA-----SSFAQEK-----   66 (239)
T ss_dssp             CHHHHHHHHHHHT--------CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHH-----HHHHHHH-----
T ss_pred             cCCCcchHHHHhC--------cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHH-----HHHHHHc-----
Confidence            4666666666663        34789999999999999999988875 999999999998552     2333211     


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                  .+ +++++..+|+...+                                                   
T Consensus        67 ------------~~-~~v~~~~~d~~~~~---------------------------------------------------   82 (239)
T 1xxl_A           67 ------------GV-ENVRFQQGTAESLP---------------------------------------------------   82 (239)
T ss_dssp             ------------TC-CSEEEEECBTTBCC---------------------------------------------------
T ss_pred             ------------CC-CCeEEEecccccCC---------------------------------------------------
Confidence                        01 24666666654321                                                   


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc--------c-----------c
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY--------V-----------G  293 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y--------f-----------G  293 (330)
                                  ...+.||+|++..+++.......+++-+.++|+ |+|++++......        +           .
T Consensus        83 ------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
T 1xxl_A           83 ------------FPDDSFDIITCRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHV  149 (239)
T ss_dssp             ------------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCC
T ss_pred             ------------CCCCcEEEEEECCchhhccCHHHHHHHHHHHcC-CCcEEEEEEcCCCCChhHHHHHHHHHHhcccccc
Confidence                        123689999999999988888999999999997 8999888631100        0           0


Q ss_pred             ccccHHHHHHhhhhcCce
Q 020125          294 FNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       294 v~gg~~~F~~~vee~G~f  311 (330)
                      ..-...++.+++++.|+-
T Consensus       150 ~~~~~~~~~~ll~~aGf~  167 (239)
T 1xxl_A          150 RESSLSEWQAMFSANQLA  167 (239)
T ss_dssp             CCCBHHHHHHHHHHTTEE
T ss_pred             CCCCHHHHHHHHHHCCCc
Confidence            112577888999999853

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.12  E-value=1.9e-09  Score=95.12  Aligned_cols=155  Identities=15%  Similarity=0.244  Sum_probs=96.4

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhcc
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  153 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~  153 (330)
                      +-.....+++.+...    ..++++|||+|||+|..+..++..+. .+|+++|+++.+++.+     +.|+..+.     
T Consensus        12 ~~~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a-----~~~~~~~~-----   77 (219)
T 3jwg_A           12 NLNQQRLGTVVAVLK----SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERA-----KDRLKIDR-----   77 (219)
T ss_dssp             CHHHHHHHHHHHHHH----HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHH-----HHHHTGGG-----
T ss_pred             cchHHHHHHHHHHHh----hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHH-----HHHHHhhc-----
Confidence            334444555554431    24688999999999999999887653 6999999999998552     22322110     


Q ss_pred             CCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 020125          154 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG  233 (330)
Q Consensus       154 ~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~  233 (330)
                           ...   ....++.+..+|+...+                                                    
T Consensus        78 -----~~~---~~~~~v~~~~~d~~~~~----------------------------------------------------   97 (219)
T 3jwg_A           78 -----LPE---MQRKRISLFQSSLVYRD----------------------------------------------------   97 (219)
T ss_dssp             -----SCH---HHHTTEEEEECCSSSCC----------------------------------------------------
T ss_pred             -----ccc---ccCcceEEEeCcccccc----------------------------------------------------
Confidence                 000   00125677776653211                                                    


Q ss_pred             chhhhhhcccccCCCCccEEEEeccccCcc--cHHHHHHHHHHHcCCCCcEEEEEecccc---c-ccc------------
Q 020125          234 SRAWERASEADQGEGGYDVILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNY---V-GFN------------  295 (330)
Q Consensus       234 ~~~w~~~~~~~~~~~~fDvILasD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~k~~y---f-Gv~------------  295 (330)
                                 ...++||+|++.++++...  ....+++.+.+.|+ |+|+++......|   | ...            
T Consensus        98 -----------~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (219)
T 3jwg_A           98 -----------KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR-PQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFE  165 (219)
T ss_dssp             -----------GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEEEBGGGGGCCCCT-----GGGCCTTS
T ss_pred             -----------cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhC-CCEEEEEccchhhhhhhcccCcccccccCceee
Confidence                       0236899999999998876  44688888888886 7886555432222   0 010            


Q ss_pred             ccHHHHH----HhhhhcCceeEEEE
Q 020125          296 NAARHLR----SLVDEEGIFGAHLI  316 (330)
Q Consensus       296 gg~~~F~----~~vee~G~f~~~~~  316 (330)
                      =+..+|.    +++++.| |.++..
T Consensus       166 ~~~~~l~~~~~~l~~~~G-f~v~~~  189 (219)
T 3jwg_A          166 WTRKEFQTWAVKVAEKYG-YSVRFL  189 (219)
T ss_dssp             BCHHHHHHHHHHHHHHHT-EEEEEE
T ss_pred             ecHHHHHHHHHHHHHHCC-cEEEEE
Confidence            1456676    6777788 466553

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.12  E-value=2e-10  Score=98.19  Aligned_cols=130  Identities=15%  Similarity=0.144  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccC
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ  154 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~  154 (330)
                      +....+++.+.+...   ...++++|||+|||+|..++.++..++.+|+++|+++.+++.+ ..|+..|.          
T Consensus        26 p~~~~~~~~~~~~l~---~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a-~~~~~~~~----------   91 (187)
T 2fhp_A           26 PTTDKVKESIFNMIG---PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVI-KENIAITK----------   91 (187)
T ss_dssp             CCCHHHHHHHHHHHC---SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHH-HHHHHHHT----------
T ss_pred             cCHHHHHHHHHHHHH---hhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHH-HHHHHHhC----------
Confidence            334556666655541   2357899999999999999988888878999999999998652 34444331          


Q ss_pred             CCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 020125          155 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS  234 (330)
Q Consensus       155 ~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~  234 (330)
                                 +..++++..+|+.+...-                                                   
T Consensus        92 -----------~~~~~~~~~~d~~~~~~~---------------------------------------------------  109 (187)
T 2fhp_A           92 -----------EPEKFEVRKMDANRALEQ---------------------------------------------------  109 (187)
T ss_dssp             -----------CGGGEEEEESCHHHHHHH---------------------------------------------------
T ss_pred             -----------CCcceEEEECcHHHHHHH---------------------------------------------------
Confidence                       223577777775441100                                                   


Q ss_pred             hhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHH--HHHcCCCCcEEEEEeccc
Q 020125          235 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLI--KKCLRPPYGVVYLATKKN  290 (330)
Q Consensus       235 ~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i--~~~L~~p~Gv~~lA~k~~  290 (330)
                        .      .....+||+|++... |.....+..++.+  .++|+ |+|++++.....
T Consensus       110 --~------~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~-~gG~l~~~~~~~  157 (187)
T 2fhp_A          110 --F------YEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLT-NEAVIVCETDKT  157 (187)
T ss_dssp             --H------HHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEE-EEEEEEEEEETT
T ss_pred             --H------HhcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccC-CCCEEEEEeCCc
Confidence              0      002358999997554 7777778887777  55675 899998876543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.12  E-value=1.2e-09  Score=98.37  Aligned_cols=148  Identities=15%  Similarity=0.170  Sum_probs=103.9

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhh
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQ  151 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~  151 (330)
                      .++.+..+++.+.+..    ..-++.+|||+|||+|..++.++.. ++ +|+++|+++.+++.+     ..+..      
T Consensus        36 ~~~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a-----~~~~~------   99 (266)
T 3ujc_A           36 ISSGGLEATKKILSDI----ELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMA-----NERVS------   99 (266)
T ss_dssp             CSTTHHHHHHHHTTTC----CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHTCC------
T ss_pred             cccchHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHH-----HHHhh------
Confidence            5666677777776553    2447889999999999999998875 55 899999999987441     11110      


Q ss_pred             ccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccc
Q 020125          152 SRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKL  231 (330)
Q Consensus       152 ~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~l  231 (330)
                                   .. .++++..+|....+                                                  
T Consensus       100 -------------~~-~~~~~~~~d~~~~~--------------------------------------------------  115 (266)
T 3ujc_A          100 -------------GN-NKIIFEANDILTKE--------------------------------------------------  115 (266)
T ss_dssp             -------------SC-TTEEEEECCTTTCC--------------------------------------------------
T ss_pred             -------------cC-CCeEEEECccccCC--------------------------------------------------
Confidence                         01 35676666654421                                                  


Q ss_pred             cCchhhhhhcccccCCCCccEEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEeccccc---------------c-
Q 020125          232 SGSRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------G-  293 (330)
Q Consensus       232 s~~~~w~~~~~~~~~~~~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yf---------------G-  293 (330)
                                   ...++||+|++.++++..  .....+++.+.++|+ |+|++++......-               | 
T Consensus       116 -------------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (266)
T 3ujc_A          116 -------------FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLK-PTGTLLITDYCATEKENWDDEFKEYVKQRKY  181 (266)
T ss_dssp             -------------CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEESCGGGCCHHHHHHHHHHTC
T ss_pred             -------------CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcC-CCCEEEEEEeccCCcccchHHHHHHHhcCCC
Confidence                         124689999999999998  788889999999997 88998887421100               0 


Q ss_pred             ccccHHHHHHhhhhcCceeEE
Q 020125          294 FNNAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       294 v~gg~~~F~~~vee~G~f~~~  314 (330)
                      ..-...++.+++++.|+-.++
T Consensus       182 ~~~~~~~~~~~l~~~Gf~~~~  202 (266)
T 3ujc_A          182 TLITVEEYADILTACNFKNVV  202 (266)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEE
T ss_pred             CCCCHHHHHHHHHHcCCeEEE
Confidence            012577888999999964433

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.12  E-value=2.2e-09  Score=91.41  Aligned_cols=132  Identities=17%  Similarity=0.286  Sum_probs=90.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCC-ceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAP-SVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~-~v~~~~  174 (330)
                      ++++|||+|||+|..++.++.. ..+|+++|+++.+++.     ...|...+                 .+.. ++++..
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~-----a~~~~~~~-----------------~~~~~~~~~~~  108 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKL-----AKENIKLN-----------------NLDNYDIRVVH  108 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTSCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHH-----HHHHHHHc-----------------CCCccceEEEE
Confidence            7889999999999999998887 4599999999999855     23333221                 0111 366666


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|+.+.                                                                ...++||+|+
T Consensus       109 ~d~~~~----------------------------------------------------------------~~~~~~D~v~  124 (194)
T 1dus_A          109 SDLYEN----------------------------------------------------------------VKDRKYNKII  124 (194)
T ss_dssp             CSTTTT----------------------------------------------------------------CTTSCEEEEE
T ss_pred             Cchhcc----------------------------------------------------------------cccCCceEEE
Confidence            664331                                                                0135799999


Q ss_pred             EeccccC-cccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEEEeecCC
Q 020125          255 LTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTD  321 (330)
Q Consensus       255 asD~iY~-~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~~~e~~d  321 (330)
                      +....+. ......+++.+.++|+ |+|++++.....     .+...+.+.+++. +...+++.....
T Consensus       125 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~l~~~-~~~~~~~~~~~~  185 (194)
T 1dus_A          125 TNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVVIQTK-----QGAKSLAKYMKDV-FGNVETVTIKGG  185 (194)
T ss_dssp             ECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEEEEST-----HHHHHHHHHHHHH-HSCCEEEEEETT
T ss_pred             ECCCcccchhHHHHHHHHHHHHcC-CCCEEEEEECCC-----CChHHHHHHHHHH-hcceEEEecCCc
Confidence            8665443 3556778888888896 889999887553     2456678888876 435555544433

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.11  E-value=3.4e-09  Score=97.81  Aligned_cols=149  Identities=21%  Similarity=0.277  Sum_probs=101.1

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccC
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ  154 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~  154 (330)
                      +...+++.+.+.........++.+|||+|||+|...+.++.. |+ +|+++|+++.+++..     ..+....       
T Consensus        62 ~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a-----~~~~~~~-------  128 (297)
T 2o57_A           62 ASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRN-----EEYNNQA-------  128 (297)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHHHHHH-------
T ss_pred             HHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHH-----HHHHHhc-------
Confidence            344455555544300002346889999999999999888775 66 899999999998652     2222211       


Q ss_pred             CCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 020125          155 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS  234 (330)
Q Consensus       155 ~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~  234 (330)
                                .+..++++..+|+...+                                                     
T Consensus       129 ----------~~~~~~~~~~~d~~~~~-----------------------------------------------------  145 (297)
T 2o57_A          129 ----------GLADNITVKYGSFLEIP-----------------------------------------------------  145 (297)
T ss_dssp             ----------TCTTTEEEEECCTTSCS-----------------------------------------------------
T ss_pred             ----------CCCcceEEEEcCcccCC-----------------------------------------------------
Confidence                      12346777777754421                                                     


Q ss_pred             hhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc----------------cccccccH
Q 020125          235 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGFNNAA  298 (330)
Q Consensus       235 ~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~----------------yfGv~gg~  298 (330)
                                ...+.||+|++.++++.......+++-+.++|+ |+|++++.....                .+......
T Consensus       146 ----------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (297)
T 2o57_A          146 ----------CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSL  214 (297)
T ss_dssp             ----------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCH
T ss_pred             ----------CCCCCEeEEEecchhhhcCCHHHHHHHHHHHcC-CCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCH
Confidence                      023689999999999998888999999999997 899988874211                01112356


Q ss_pred             HHHHHhhhhcCce
Q 020125          299 RHLRSLVDEEGIF  311 (330)
Q Consensus       299 ~~F~~~vee~G~f  311 (330)
                      ..+.+++++.|+-
T Consensus       215 ~~~~~~l~~aGf~  227 (297)
T 2o57_A          215 GLYRSLAKECGLV  227 (297)
T ss_dssp             HHHHHHHHHTTEE
T ss_pred             HHHHHHHHHCCCe
Confidence            7788899999963

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.11  E-value=1.9e-09  Score=99.10  Aligned_cols=107  Identities=24%  Similarity=0.266  Sum_probs=81.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++.+|||+|||+|..++.++..|+ +|+++|+++.+++.     ...|....                 .+.+++.+..
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  123 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDR-----AKQAAEAK-----------------GVSDNMQFIH  123 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHC------------------CCGGGEEEEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHH-----HHHHHHhc-----------------CCCcceEEEE
Confidence            3578999999999999999988876 89999999999854     23333210                 1224677777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|....+.                                                              ...++||+|+
T Consensus       124 ~d~~~~~~--------------------------------------------------------------~~~~~fD~v~  141 (285)
T 4htf_A          124 CAAQDVAS--------------------------------------------------------------HLETPVDLIL  141 (285)
T ss_dssp             SCGGGTGG--------------------------------------------------------------GCSSCEEEEE
T ss_pred             cCHHHhhh--------------------------------------------------------------hcCCCceEEE
Confidence            77544210                                                              1246899999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +..+++.......+++.+.++|+ |+|++++..
T Consensus       142 ~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  173 (285)
T 4htf_A          142 FHAVLEWVADPRSVLQTLWSVLR-PGGVLSLMF  173 (285)
T ss_dssp             EESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             ECchhhcccCHHHHHHHHHHHcC-CCeEEEEEE
Confidence            99999999888999999999997 899998865

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.10  E-value=1.4e-09  Score=96.77  Aligned_cols=103  Identities=22%  Similarity=0.338  Sum_probs=77.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++++|||+|||+|..+..++..|..+|+++|+++.+++.+     +.|..                     ..++++..
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a-----~~~~~---------------------~~~~~~~~   95 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARA-----RAAGP---------------------DTGITYER   95 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHH-----HHTSC---------------------SSSEEEEE
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHH-----HHhcc---------------------cCCceEEE
Confidence            47889999999999999999888877999999999987441     11110                     02455555


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|....+                                                               ...++||+|+
T Consensus        96 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~  112 (243)
T 3bkw_A           96 ADLDKLH---------------------------------------------------------------LPQDSFDLAY  112 (243)
T ss_dssp             CCGGGCC---------------------------------------------------------------CCTTCEEEEE
T ss_pred             cChhhcc---------------------------------------------------------------CCCCCceEEE
Confidence            5532210                                                               1246899999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +..+++.......+++.+.++|+ |+|++++..
T Consensus       113 ~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~  144 (243)
T 3bkw_A          113 SSLALHYVEDVARLFRTVHQALS-PGGHFVFST  144 (243)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EeccccccchHHHHHHHHHHhcC-cCcEEEEEe
Confidence            99999988888899999999997 889988864

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.09  E-value=2.2e-09  Score=91.29  Aligned_cols=137  Identities=16%  Similarity=0.160  Sum_probs=93.5

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCC
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS  158 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~  158 (330)
                      .+..++.+..    ...++++|||+|||+|..++.++..+ .+|++.|+++.+++.     ...|+..+           
T Consensus        20 ~~~~~~~~~~----~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~-----a~~~~~~~-----------   78 (192)
T 1l3i_A           20 EVRCLIMCLA----EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAIST-----TEMNLQRH-----------   78 (192)
T ss_dssp             HHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHH-----HHHHHHHT-----------
T ss_pred             HHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHH-----HHHHHHHc-----------
Confidence            3445555443    24578899999999999999998887 699999999999854     33343321           


Q ss_pred             CCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 020125          159 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE  238 (330)
Q Consensus       159 ~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~  238 (330)
                            .+..++.+..+|+.+.                                                          
T Consensus        79 ------~~~~~~~~~~~d~~~~----------------------------------------------------------   94 (192)
T 1l3i_A           79 ------GLGDNVTLMEGDAPEA----------------------------------------------------------   94 (192)
T ss_dssp             ------TCCTTEEEEESCHHHH----------------------------------------------------------
T ss_pred             ------CCCcceEEEecCHHHh----------------------------------------------------------
Confidence                  1123455555553220                                                          


Q ss_pred             hhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEE
Q 020125          239 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       239 ~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~  315 (330)
                           .....+||+|++..++.   ....+++.+.++|+ |+|++++.....     ....++.+.+++.|+ ..+.
T Consensus        95 -----~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~-~gG~l~~~~~~~-----~~~~~~~~~l~~~g~-~~~~  156 (192)
T 1l3i_A           95 -----LCKIPDIDIAVVGGSGG---ELQEILRIIKDKLK-PGGRIIVTAILL-----ETKFEAMECLRDLGF-DVNI  156 (192)
T ss_dssp             -----HTTSCCEEEEEESCCTT---CHHHHHHHHHHTEE-EEEEEEEEECBH-----HHHHHHHHHHHHTTC-CCEE
T ss_pred             -----cccCCCCCEEEECCchH---HHHHHHHHHHHhcC-CCcEEEEEecCc-----chHHHHHHHHHHCCC-ceEE
Confidence                 00124799999887653   46788888888886 889988875432     356788899999986 5443

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.08  E-value=3.1e-10  Score=105.96  Aligned_cols=49  Identities=27%  Similarity=0.403  Sum_probs=38.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .+++++|||+|||+|..++.++.. +..+|+++|+++.+++.+ +.|+..+
T Consensus        44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A-~~~~~~~   93 (292)
T 3g07_A           44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSA-RQNIRHY   93 (292)
T ss_dssp             GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHH-HHTC---
T ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHHHHhh
Confidence            468999999999999999988765 566999999999999763 4555443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.08  E-value=2.1e-09  Score=93.96  Aligned_cols=135  Identities=16%  Similarity=0.171  Sum_probs=94.2

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      .++....+.+++....      -++++|||+|||+|..++.++..+..+|+++|+++.+++.     .+.|...+     
T Consensus        43 ~~~~~~~~~~~l~~~~------~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~-----  106 (205)
T 3grz_A           43 NHQTTQLAMLGIERAM------VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA-----AEENAALN-----  106 (205)
T ss_dssp             CHHHHHHHHHHHHHHC------SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHH-----HHHHHHHT-----
T ss_pred             CCccHHHHHHHHHHhc------cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHHc-----
Confidence            4566777777776542      3678999999999999999988888899999999999855     33343321     


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                  .+. ++++..+|+...                                                    
T Consensus       107 ------------~~~-~v~~~~~d~~~~----------------------------------------------------  121 (205)
T 3grz_A          107 ------------GIY-DIALQKTSLLAD----------------------------------------------------  121 (205)
T ss_dssp             ------------TCC-CCEEEESSTTTT----------------------------------------------------
T ss_pred             ------------CCC-ceEEEecccccc----------------------------------------------------
Confidence                        011 256666554221                                                    


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCc
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  310 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~  310 (330)
                                   ..++||+|++.-..   ..+..+++.+.++|+ |+|++++..-..     .....+.+.+++.|+
T Consensus       122 -------------~~~~fD~i~~~~~~---~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~~~~~Gf  177 (205)
T 3grz_A          122 -------------VDGKFDLIVANILA---EILLDLIPQLDSHLN-EDGQVIFSGIDY-----LQLPKIEQALAENSF  177 (205)
T ss_dssp             -------------CCSCEEEEEEESCH---HHHHHHGGGSGGGEE-EEEEEEEEEEEG-----GGHHHHHHHHHHTTE
T ss_pred             -------------CCCCceEEEECCcH---HHHHHHHHHHHHhcC-CCCEEEEEecCc-----ccHHHHHHHHHHcCC
Confidence                         12589999987543   234566666667776 889998864332     257888999999985

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.08  E-value=8.8e-09  Score=94.59  Aligned_cols=146  Identities=16%  Similarity=0.175  Sum_probs=98.3

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH-HcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhcc
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  153 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~-~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~  153 (330)
                      ++...+.+.+.+..    ...++.+|||+|||+|..++.++ ..|+ +|+++|+++.+++.+     ..+....      
T Consensus        47 ~a~~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a-----~~~~~~~------  110 (287)
T 1kpg_A           47 EAQIAKIDLALGKL----GLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHV-----QQLVANS------  110 (287)
T ss_dssp             HHHHHHHHHHHTTT----TCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHHHHTC------
T ss_pred             HHHHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHH-----HHHHHhc------
Confidence            34445556665543    24568899999999999998887 5676 999999999988542     2232210      


Q ss_pred             CCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 020125          154 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG  233 (330)
Q Consensus       154 ~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~  233 (330)
                                 .+..++++..+|+..                                                      
T Consensus       111 -----------~~~~~~~~~~~d~~~------------------------------------------------------  125 (287)
T 1kpg_A          111 -----------ENLRSKRVLLAGWEQ------------------------------------------------------  125 (287)
T ss_dssp             -----------CCCSCEEEEESCGGG------------------------------------------------------
T ss_pred             -----------CCCCCeEEEECChhh------------------------------------------------------
Confidence                       122345555544311                                                      


Q ss_pred             chhhhhhcccccCCCCccEEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEeccc---------------------
Q 020125          234 SRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKN---------------------  290 (330)
Q Consensus       234 ~~~w~~~~~~~~~~~~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~~---------------------  290 (330)
                                 .. ++||+|++.+++...  .....+++.+.++|+ |+|++++..-..                     
T Consensus       126 -----------~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (287)
T 1kpg_A          126 -----------FD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTITGLHPKEIHERGLPMSFTFARFL  192 (287)
T ss_dssp             -----------CC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHH
T ss_pred             -----------CC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcC-CCCEEEEEEecCCCccccccccccccccccchh
Confidence                       01 689999999999877  678899999999997 899988764211                     


Q ss_pred             ------cc--cccccHHHHHHhhhhcCceeEE
Q 020125          291 ------YV--GFNNAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       291 ------yf--Gv~gg~~~F~~~vee~G~f~~~  314 (330)
                            .|  |.-.+..++.+++++.|+-..+
T Consensus       193 ~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~  224 (287)
T 1kpg_A          193 KFIVTEIFPGGRLPSIPMVQECASANGFTVTR  224 (287)
T ss_dssp             HHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEE
T ss_pred             hhHHheeCCCCCCCCHHHHHHHHHhCCcEEEE
Confidence                  11  1112578888999999964333

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.07  E-value=2e-09  Score=93.69  Aligned_cols=128  Identities=12%  Similarity=0.104  Sum_probs=91.7

Q ss_pred             CCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecc
Q 020125           97 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD  176 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gd  176 (330)
                      +.+|||+|||+|.....++..|+ +|+++|+++.+++.+     ..|                       .+++++..+|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~-----------------------~~~~~~~~~d   92 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELA-----RQT-----------------------HPSVTFHHGT   92 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHH-----HHH-----------------------CTTSEEECCC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHH-----HHh-----------------------CCCCeEEeCc
Confidence            88999999999999999988877 899999999988542     111                       0245555555


Q ss_pred             cCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEe
Q 020125          177 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT  256 (330)
Q Consensus       177 W~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILas  256 (330)
                      ....+                                                               ...++||+|++.
T Consensus        93 ~~~~~---------------------------------------------------------------~~~~~fD~v~~~  109 (203)
T 3h2b_A           93 ITDLS---------------------------------------------------------------DSPKRWAGLLAW  109 (203)
T ss_dssp             GGGGG---------------------------------------------------------------GSCCCEEEEEEE
T ss_pred             ccccc---------------------------------------------------------------cCCCCeEEEEeh
Confidence            43311                                                               124689999999


Q ss_pred             ccccCcc--cHHHHHHHHHHHcCCCCcEEEEEecccc----cc------ccccHHHHHHhhhhcCceeEEEEee
Q 020125          257 EIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNY----VG------FNNAARHLRSLVDEEGIFGAHLIKE  318 (330)
Q Consensus       257 D~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~k~~y----fG------v~gg~~~F~~~vee~G~f~~~~~~e  318 (330)
                      .+++...  ....+++.+.++|+ |+|++++......    +.      ..-...++.+++++.|+ ....+..
T Consensus       110 ~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf-~~~~~~~  181 (203)
T 3h2b_A          110 YSLIHMGPGELPDALVALRMAVE-DGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGF-QVTSSHW  181 (203)
T ss_dssp             SSSTTCCTTTHHHHHHHHHHTEE-EEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTE-EEEEEEE
T ss_pred             hhHhcCCHHHHHHHHHHHHHHcC-CCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCC-cEEEEEe
Confidence            9998875  78889999999997 8899988752210    00      01157899999999996 4433333

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.07  E-value=2.1e-09  Score=94.82  Aligned_cols=111  Identities=16%  Similarity=0.196  Sum_probs=75.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .++++|||+|||+|..+..++..+. .+|+++|+++.+++.     ...|+..+          ...   .....++++.
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~----------~~~---~~~~~~v~~~   89 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEI-----AQERLDRL----------RLP---RNQWERLQLI   89 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHH-----HHHHHTTC----------CCC---HHHHTTEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHH-----HHHHHHHh----------cCC---cccCcceEEE
Confidence            3678999999999999999887653 699999999999855     23333210          000   0001256776


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|....+                                                               ...++||+|
T Consensus        90 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v  106 (217)
T 3jwh_A           90 QGALTYQD---------------------------------------------------------------KRFHGYDAA  106 (217)
T ss_dssp             ECCTTSCC---------------------------------------------------------------GGGCSCSEE
T ss_pred             eCCccccc---------------------------------------------------------------ccCCCcCEE
Confidence            66642211                                                               023689999


Q ss_pred             EEeccccCcc--cHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          254 LLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       254 LasD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      ++.++++.-.  ....+++.+.++|+ |+|++++..
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~  141 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQ-PKIVIVTTP  141 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEEE
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence            9999999665  55788888888886 788666553

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.07  E-value=6.8e-09  Score=96.47  Aligned_cols=127  Identities=16%  Similarity=0.112  Sum_probs=90.3

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .-++.+|||+|||+|..++.++.. | .+|+++|+++.+++.     .+.|....                 .+..++++
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~  126 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAH-----DKAMFDEV-----------------DSPRRKEV  126 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHH-----HHHHHHHS-----------------CCSSCEEE
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHH-----HHHHHHhc-----------------CCCCceEE
Confidence            347889999999999999998876 7 489999999999855     23333211                 12335666


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|+.+                                                                  ..++||+
T Consensus       127 ~~~d~~~------------------------------------------------------------------~~~~fD~  140 (302)
T 3hem_A          127 RIQGWEE------------------------------------------------------------------FDEPVDR  140 (302)
T ss_dssp             EECCGGG------------------------------------------------------------------CCCCCSE
T ss_pred             EECCHHH------------------------------------------------------------------cCCCccE
Confidence            6555322                                                                  0368999


Q ss_pred             EEEeccccCc---------ccHHHHHHHHHHHcCCCCcEEEEEeccc---------------------------cc--cc
Q 020125          253 ILLTEIPYSV---------TSLKKLYLLIKKCLRPPYGVVYLATKKN---------------------------YV--GF  294 (330)
Q Consensus       253 ILasD~iY~~---------~~~~~L~~~i~~~L~~p~Gv~~lA~k~~---------------------------yf--Gv  294 (330)
                      |++.+++...         +.+..+++.+.++|+ |+|++++..-..                           .|  |.
T Consensus       141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  219 (302)
T 3hem_A          141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGR  219 (302)
T ss_dssp             EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC-TTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCC
T ss_pred             EEEcchHHhcCccccccchhHHHHHHHHHHHhcC-CCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCC
Confidence            9999998776         556888888999896 899988864211                           11  11


Q ss_pred             cccHHHHHHhhhhcCc
Q 020125          295 NNAARHLRSLVDEEGI  310 (330)
Q Consensus       295 ~gg~~~F~~~vee~G~  310 (330)
                      -....++.+++++.|+
T Consensus       220 ~~s~~~~~~~l~~aGf  235 (302)
T 3hem_A          220 LPRISQVDYYSSNAGW  235 (302)
T ss_dssp             CCCHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhCCc
Confidence            2357788899999986

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.07  E-value=1.6e-09  Score=95.07  Aligned_cols=124  Identities=23%  Similarity=0.264  Sum_probs=88.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      ++.+|||+|||+|..+..++..|+ +|+++|+++.+++.+     ..|.                        .+++..+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~------------------------~~~~~~~   92 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEA-----SRRL------------------------GRPVRTM   92 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHH------------------------TSCCEEC
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHH-----HHhc------------------------CCceEEe
Confidence            588999999999999999988876 899999999988542     2221                        0112222


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |....                                                                ...+.||+|++
T Consensus        93 d~~~~----------------------------------------------------------------~~~~~fD~v~~  108 (211)
T 3e23_A           93 LFHQL----------------------------------------------------------------DAIDAYDAVWA  108 (211)
T ss_dssp             CGGGC----------------------------------------------------------------CCCSCEEEEEE
T ss_pred             eeccC----------------------------------------------------------------CCCCcEEEEEe
Confidence            22110                                                                13468999999


Q ss_pred             eccccCcc--cHHHHHHHHHHHcCCCCcEEEEEecccccc---------ccccHHHHHHhhhhcC-ceeEE
Q 020125          256 TEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNYVG---------FNNAARHLRSLVDEEG-IFGAH  314 (330)
Q Consensus       256 sD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfG---------v~gg~~~F~~~vee~G-~f~~~  314 (330)
                      ..+++...  ....+++-+.+.|+ |+|++++......-.         ..-...++.+++++.| +-..+
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~  178 (211)
T 3e23_A          109 HACLLHVPRDELADVLKLIWRALK-PGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVA  178 (211)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcC-CCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEE
Confidence            99998876  67788888888996 899999875322100         0126789999999999 64443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.06  E-value=2.6e-10  Score=97.33  Aligned_cols=57  Identities=23%  Similarity=0.235  Sum_probs=41.5

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      +....+.+.+.+...   ...++++|||+|||+|..++.++..++.+|+++|+++.+++.
T Consensus        13 p~~~~~~~~~~~~l~---~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~   69 (177)
T 2esr_A           13 PTSDKVRGAIFNMIG---PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAI   69 (177)
T ss_dssp             -----CHHHHHHHHC---SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHH---hhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence            334444555554431   145789999999999999999888887899999999999855

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.06  E-value=2.7e-09  Score=95.66  Aligned_cols=132  Identities=16%  Similarity=0.240  Sum_probs=93.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++.+|||+|||+|..++.++..+..+|++.|+++.+++.+     +.|..                   .. .++++..
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a-----~~~~~-------------------~~-~~~~~~~  146 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEA-----KRELA-------------------GM-PVGKFIL  146 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHH-----HHHTT-------------------TS-SEEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHH-----HHHhc-------------------cC-CceEEEE
Confidence            46889999999999999988877777899999999988542     22211                   01 3566666


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|+...+                                                               ...+.||+|+
T Consensus       147 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~  163 (254)
T 1xtp_A          147 ASMETAT---------------------------------------------------------------LPPNTYDLIV  163 (254)
T ss_dssp             SCGGGCC---------------------------------------------------------------CCSSCEEEEE
T ss_pred             ccHHHCC---------------------------------------------------------------CCCCCeEEEE
Confidence            6643321                                                               1235899999


Q ss_pred             EeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEeccc----c------ccccccHHHHHHhhhhcCceeEEE
Q 020125          255 LTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKN----Y------VGFNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       255 asD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~~----y------fGv~gg~~~F~~~vee~G~f~~~~  315 (330)
                      +..+++..  .....+++-+.++|+ |+|++++.....    +      ....-...++.+++++.|+-..++
T Consensus       164 ~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  235 (254)
T 1xtp_A          164 IQWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence            99999887  457788888888996 899998875210    0      001125688999999999744443

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.06  E-value=3.6e-09  Score=93.20  Aligned_cols=109  Identities=21%  Similarity=0.334  Sum_probs=76.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      ++++|||+|||+|..++.++..|+ +|+++|+++.+++.     .+.|....          ...   .....++.+..+
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~----------~~~---~~~~~~~~~~~~   90 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRL-----AETAARSP----------GLN---QKTGGKAEFKVE   90 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHTTCC----------SCC---SSSSCEEEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHH-----HHHHHHhc----------CCc---cccCcceEEEEe
Confidence            688999999999999999998877 89999999998854     22232100          000   001124555555


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |....+                                                               ...+.||+|++
T Consensus        91 d~~~~~---------------------------------------------------------------~~~~~~D~v~~  107 (235)
T 3sm3_A           91 NASSLS---------------------------------------------------------------FHDSSFDFAVM  107 (235)
T ss_dssp             CTTSCC---------------------------------------------------------------SCTTCEEEEEE
T ss_pred             cccccC---------------------------------------------------------------CCCCceeEEEE
Confidence            433211                                                               12468999999


Q ss_pred             eccccCcccHH---HHHHHHHHHcCCCCcEEEEEe
Q 020125          256 TEIPYSVTSLK---KLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       256 sD~iY~~~~~~---~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      ..+++......   .+++.+.+.|+ |+|++++..
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~  141 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLK-PGAYLYLVE  141 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcC-CCeEEEEEE
Confidence            99999887666   78888888896 889988863

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.06  E-value=1.6e-09  Score=97.18  Aligned_cols=132  Identities=15%  Similarity=0.192  Sum_probs=91.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      ++.+|||+|||+|..++.++..+..+|+++|+++.+++.+     +.|....                 . ..++++..+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a-----~~~~~~~-----------------~-~~~~~~~~~  135 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQA-----KTYLGEE-----------------G-KRVRNYFCC  135 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHH-----HHHTGGG-----------------G-GGEEEEEEC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHH-----HHHhhhc-----------------C-CceEEEEEc
Confidence            5889999999999999988877667999999999998542     2222110                 0 124555555


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |+...+                                                               ...+.||+|++
T Consensus       136 d~~~~~---------------------------------------------------------------~~~~~fD~v~~  152 (241)
T 2ex4_A          136 GLQDFT---------------------------------------------------------------PEPDSYDVIWI  152 (241)
T ss_dssp             CGGGCC---------------------------------------------------------------CCSSCEEEEEE
T ss_pred             ChhhcC---------------------------------------------------------------CCCCCEEEEEE
Confidence            533211                                                               12357999999


Q ss_pred             eccccCccc--HHHHHHHHHHHcCCCCcEEEEEecccc----c-----cccccHHHHHHhhhhcCceeEE
Q 020125          256 TEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKNY----V-----GFNNAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       256 sD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA~k~~y----f-----Gv~gg~~~F~~~vee~G~f~~~  314 (330)
                      ..+++....  +..+++.+.++|+ |+|++++......    |     .......++.+++++.|+-..+
T Consensus       153 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  221 (241)
T 2ex4_A          153 QWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA  221 (241)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEE
Confidence            999887655  5578888888997 8999888642110    0     0112688999999999964333

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.06  E-value=6.6e-09  Score=91.28  Aligned_cols=122  Identities=20%  Similarity=0.137  Sum_probs=87.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      ++++|||+|||+|..+..++..++ +|+++|+++.+++.+     ..+.                      ..++++..+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~----------------------~~~~~~~~~   96 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIA-----KEKL----------------------PKEFSITEG   96 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHH-----HHHS----------------------CTTCCEESC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHH-----HHhC----------------------CCceEEEeC
Confidence            688999999999999999888876 899999999987542     1111                      123455555


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |..+.+                                                               .. ++||+|++
T Consensus        97 d~~~~~---------------------------------------------------------------~~-~~fD~v~~  112 (220)
T 3hnr_A           97 DFLSFE---------------------------------------------------------------VP-TSIDTIVS  112 (220)
T ss_dssp             CSSSCC---------------------------------------------------------------CC-SCCSEEEE
T ss_pred             ChhhcC---------------------------------------------------------------CC-CCeEEEEE
Confidence            533311                                                               12 68999999


Q ss_pred             eccccCcccHHH--HHHHHHHHcCCCCcEEEEEeccccc--------------c-----------ccccHHHHHHhhhhc
Q 020125          256 TEIPYSVTSLKK--LYLLIKKCLRPPYGVVYLATKKNYV--------------G-----------FNNAARHLRSLVDEE  308 (330)
Q Consensus       256 sD~iY~~~~~~~--L~~~i~~~L~~p~Gv~~lA~k~~yf--------------G-----------v~gg~~~F~~~vee~  308 (330)
                      ..+++.......  +++.+.++|+ |+|++++......-              |           .-....++.+++++.
T Consensus       113 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (220)
T 3hnr_A          113 TYAFHHLTDDEKNVAIAKYSQLLN-KGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENN  191 (220)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHT
T ss_pred             CcchhcCChHHHHHHHHHHHHhcC-CCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHC
Confidence            999998877765  8888888996 89999987421100              0           001457888999999


Q ss_pred             Cc
Q 020125          309 GI  310 (330)
Q Consensus       309 G~  310 (330)
                      |+
T Consensus       192 Gf  193 (220)
T 3hnr_A          192 GF  193 (220)
T ss_dssp             TE
T ss_pred             CC
Confidence            96

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.06  E-value=4.2e-09  Score=93.62  Aligned_cols=138  Identities=17%  Similarity=0.204  Sum_probs=94.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      ..++.+|||+|||+|..+..++... ..+|+++|+++.+++.     .+.|..                    ...++++
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~-----a~~~~~--------------------~~~~~~~   96 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEI-----AKNRFR--------------------GNLKVKY   96 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHH-----HHHHTC--------------------SCTTEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHH-----HHHhhc--------------------cCCCEEE
Confidence            4577899999999999998888763 3489999999998854     222211                    0125666


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|....+                                                                ..+.||+
T Consensus        97 ~~~d~~~~~----------------------------------------------------------------~~~~fD~  112 (234)
T 3dtn_A           97 IEADYSKYD----------------------------------------------------------------FEEKYDM  112 (234)
T ss_dssp             EESCTTTCC----------------------------------------------------------------CCSCEEE
T ss_pred             EeCchhccC----------------------------------------------------------------CCCCceE
Confidence            666643311                                                                1268999


Q ss_pred             EEEeccccCcccHH--HHHHHHHHHcCCCCcEEEEEecccc-------------------ccc----------------c
Q 020125          253 ILLTEIPYSVTSLK--KLYLLIKKCLRPPYGVVYLATKKNY-------------------VGF----------------N  295 (330)
Q Consensus       253 ILasD~iY~~~~~~--~L~~~i~~~L~~p~Gv~~lA~k~~y-------------------fGv----------------~  295 (330)
                      |++..+++......  .+++-+.++|+ |+|++++......                   .|.                .
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILK-ESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKD  191 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcC-CCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence            99999999886544  48888888997 8899998752110                   011                1


Q ss_pred             ccHHHHHHhhhhcCceeEEEEeecCC
Q 020125          296 NAARHLRSLVDEEGIFGAHLIKEMTD  321 (330)
Q Consensus       296 gg~~~F~~~vee~G~f~~~~~~e~~d  321 (330)
                      -...++.+++++.|+-.+++....-.
T Consensus       192 ~~~~~~~~ll~~aGF~~v~~~~~~~~  217 (234)
T 3dtn_A          192 IEMNQQLNWLKEAGFRDVSCIYKYYQ  217 (234)
T ss_dssp             CBHHHHHHHHHHTTCEEEEEEEEETT
T ss_pred             cCHHHHHHHHHHcCCCceeeeeeecc
Confidence            24567778999999876766554444

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.06  E-value=2.8e-09  Score=97.76  Aligned_cols=135  Identities=20%  Similarity=0.207  Sum_probs=93.4

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      ..+......+++...      ..++++|||+|||+|..++.+++.|+ +|+++|+++.+++.     .+.|...+     
T Consensus       103 ~~~tt~~~~~~l~~~------~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~-----a~~n~~~~-----  165 (254)
T 2nxc_A          103 HHETTRLALKALARH------LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQ-----AEANAKRN-----  165 (254)
T ss_dssp             CSHHHHHHHHHHHHH------CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHH-----HHHHHHHT-----
T ss_pred             CCHHHHHHHHHHHHh------cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHH-----HHHHHHHc-----
Confidence            456666666777654      24688999999999999999999998 99999999999854     33443321     


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                  .+.  +++..+|+...                                                    
T Consensus       166 ------------~~~--v~~~~~d~~~~----------------------------------------------------  179 (254)
T 2nxc_A          166 ------------GVR--PRFLEGSLEAA----------------------------------------------------  179 (254)
T ss_dssp             ------------TCC--CEEEESCHHHH----------------------------------------------------
T ss_pred             ------------CCc--EEEEECChhhc----------------------------------------------------
Confidence                        111  55555443220                                                    


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCce
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f  311 (330)
                                  ...++||+|++. .++  ..+..++..+.++|+ |+|++++..-..     .....+.+.+++.|+-
T Consensus       180 ------------~~~~~fD~Vv~n-~~~--~~~~~~l~~~~~~Lk-pgG~lils~~~~-----~~~~~v~~~l~~~Gf~  237 (254)
T 2nxc_A          180 ------------LPFGPFDLLVAN-LYA--ELHAALAPRYREALV-PGGRALLTGILK-----DRAPLVREAMAGAGFR  237 (254)
T ss_dssp             ------------GGGCCEEEEEEE-CCH--HHHHHHHHHHHHHEE-EEEEEEEEEEEG-----GGHHHHHHHHHHTTCE
T ss_pred             ------------CcCCCCCEEEEC-CcH--HHHHHHHHHHHHHcC-CCCEEEEEeecc-----CCHHHHHHHHHHCCCE
Confidence                        012579999975 222  345677888888886 889988864321     2578889999999963

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.06  E-value=2.5e-09  Score=95.19  Aligned_cols=139  Identities=19%  Similarity=0.223  Sum_probs=97.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCC
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS  158 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~  158 (330)
                      .+.+++....      -++.+|||+|||+|..+..++..|+ +|+++|+++.+++.+     ..|.              
T Consensus        42 ~~~~~l~~~~------~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~--------------   95 (242)
T 3l8d_A           42 TIIPFFEQYV------KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKG-----KERG--------------   95 (242)
T ss_dssp             THHHHHHHHS------CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HTTT--------------
T ss_pred             HHHHHHHHHc------CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHH-----Hhhc--------------
Confidence            4455555442      2688999999999999999998877 899999999987542     1110              


Q ss_pred             CCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 020125          159 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE  238 (330)
Q Consensus       159 ~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~  238 (330)
                             ...++++..+|....+                                                         
T Consensus        96 -------~~~~~~~~~~d~~~~~---------------------------------------------------------  111 (242)
T 3l8d_A           96 -------EGPDLSFIKGDLSSLP---------------------------------------------------------  111 (242)
T ss_dssp             -------CBTTEEEEECBTTBCS---------------------------------------------------------
T ss_pred             -------ccCCceEEEcchhcCC---------------------------------------------------------
Confidence                   0135666666643321                                                         


Q ss_pred             hhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc-----------cc-----ccccHHHHH
Q 020125          239 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-----------VG-----FNNAARHLR  302 (330)
Q Consensus       239 ~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y-----------fG-----v~gg~~~F~  302 (330)
                            ...++||+|++..+++.......+++.+.++|+ |+|++++......           ++     ..-...++.
T Consensus       112 ------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (242)
T 3l8d_A          112 ------FENEQFEAIMAINSLEWTEEPLRALNEIKRVLK-SDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFE  184 (242)
T ss_dssp             ------SCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEE-EEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHH
T ss_pred             ------CCCCCccEEEEcChHhhccCHHHHHHHHHHHhC-CCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHH
Confidence                  124689999999999999999999999999997 8999988752110           00     012456889


Q ss_pred             HhhhhcCceeEE
Q 020125          303 SLVDEEGIFGAH  314 (330)
Q Consensus       303 ~~vee~G~f~~~  314 (330)
                      +++++.|+-..+
T Consensus       185 ~~l~~~Gf~~~~  196 (242)
T 3l8d_A          185 QLVKEQGFKVVD  196 (242)
T ss_dssp             HHHHHTTEEEEE
T ss_pred             HHHHHcCCEEEE
Confidence            999999963333

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.05  E-value=9.6e-10  Score=106.77  Aligned_cols=109  Identities=25%  Similarity=0.345  Sum_probs=80.3

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      ..+++++|||+|||+|..++.++..|+++|+++|.+ .+++.+ ..|+..|.                     +..++++
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a-~~~~~~~~---------------------~~~~v~~  116 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHA-RALVKANN---------------------LDHIVEV  116 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHH-HHHHHHTT---------------------CTTTEEE
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHH-HHHHHHcC---------------------CCCeEEE
Confidence            467899999999999999999999999999999999 887552 34444331                     2345777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+.+                                                                ..++||+
T Consensus       117 ~~~d~~~~~----------------------------------------------------------------~~~~~D~  132 (376)
T 3r0q_C          117 IEGSVEDIS----------------------------------------------------------------LPEKVDV  132 (376)
T ss_dssp             EESCGGGCC----------------------------------------------------------------CSSCEEE
T ss_pred             EECchhhcC----------------------------------------------------------------cCCcceE
Confidence            777653311                                                                1268999


Q ss_pred             EEEeccccCc---ccHHHHHHHHHHHcCCCCcEEEEEecc
Q 020125          253 ILLTEIPYSV---TSLKKLYLLIKKCLRPPYGVVYLATKK  289 (330)
Q Consensus       253 ILasD~iY~~---~~~~~L~~~i~~~L~~p~Gv~~lA~k~  289 (330)
                      |++.=+.|..   ...+.+++.+.++|+ |+|++++....
T Consensus       133 Iv~~~~~~~l~~e~~~~~~l~~~~~~Lk-pgG~li~~~~~  171 (376)
T 3r0q_C          133 IISEWMGYFLLRESMFDSVISARDRWLK-PTGVMYPSHAR  171 (376)
T ss_dssp             EEECCCBTTBTTTCTHHHHHHHHHHHEE-EEEEEESSEEE
T ss_pred             EEEcChhhcccchHHHHHHHHHHHhhCC-CCeEEEEecCe
Confidence            9984444544   568889999988997 88988775443

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.05  E-value=4.7e-09  Score=95.04  Aligned_cols=129  Identities=15%  Similarity=0.134  Sum_probs=91.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++.+|||+|||+|..+..++..+. +|++.|+++.+++.+     ..+....                 .+ +++.+..
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a-----~~~~~~~-----------------~~-~~v~~~~   91 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVA-----RAFIEGN-----------------GH-QQVEYVQ   91 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHH-----HHHHHHT-----------------TC-CSEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHH-----HHHHHhc-----------------CC-CceEEEE
Confidence            3688999999999999999888775 999999999998552     2222210                 01 2466666


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|....+                                                               ...+.||+|+
T Consensus        92 ~d~~~l~---------------------------------------------------------------~~~~~fD~V~  108 (260)
T 1vl5_A           92 GDAEQMP---------------------------------------------------------------FTDERFHIVT  108 (260)
T ss_dssp             CCC-CCC---------------------------------------------------------------SCTTCEEEEE
T ss_pred             ecHHhCC---------------------------------------------------------------CCCCCEEEEE
Confidence            6644321                                                               1236899999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc-------------------ccccccHHHHHHhhhhcCce
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-------------------VGFNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y-------------------fGv~gg~~~F~~~vee~G~f  311 (330)
                      +..+++.-...+.+++-+.+.|+ |+|++++......                   ....-...++.+++++.|+-
T Consensus       109 ~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  183 (260)
T 1vl5_A          109 CRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFE  183 (260)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCE
T ss_pred             EhhhhHhcCCHHHHHHHHHHHcC-CCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCe
Confidence            99999998888999999999997 8999888631100                   00112467788889988863

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.05  E-value=1.2e-09  Score=104.57  Aligned_cols=105  Identities=27%  Similarity=0.323  Sum_probs=76.2

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      ...++++|||+|||+|..++.+++.|+.+|+++|+++ +++. .+.|+..|                     .+..++.+
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~-a~~~~~~~---------------------~~~~~i~~  117 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQ-AMDIIRLN---------------------KLEDTITL  117 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHH-HHHHHHHT---------------------TCTTTEEE
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHH-HHHHHHHc---------------------CCCCcEEE
Confidence            3568999999999999999999999988999999996 7644 23444332                     12345777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+.+                                                               ...++||+
T Consensus       118 ~~~d~~~~~---------------------------------------------------------------~~~~~~D~  134 (340)
T 2fyt_A          118 IKGKIEEVH---------------------------------------------------------------LPVEKVDV  134 (340)
T ss_dssp             EESCTTTSC---------------------------------------------------------------CSCSCEEE
T ss_pred             EEeeHHHhc---------------------------------------------------------------CCCCcEEE
Confidence            666644321                                                               12358999


Q ss_pred             EEEecc---ccCcccHHHHHHHHHHHcCCCCcEEE
Q 020125          253 ILLTEI---PYSVTSLKKLYLLIKKCLRPPYGVVY  284 (330)
Q Consensus       253 ILasD~---iY~~~~~~~L~~~i~~~L~~p~Gv~~  284 (330)
                      |++.-+   +......+.+++.+.++|+ |+|+++
T Consensus       135 Ivs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li  168 (340)
T 2fyt_A          135 IISEWMGYFLLFESMLDSVLYAKNKYLA-KGGSVY  168 (340)
T ss_dssp             EEECCCBTTBTTTCHHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEEcCchhhccCHHHHHHHHHHHHhhcC-CCcEEE
Confidence            998764   4455667778888888997 889876

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.04  E-value=7.7e-09  Score=96.65  Aligned_cols=118  Identities=15%  Similarity=0.126  Sum_probs=82.4

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccC
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ  154 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~  154 (330)
                      +...+.+.+.+..    ...++.+|||+|||+|..++.++.. |+ +|+++|+++.+++.+     +.+....       
T Consensus        74 ~~~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a-----~~~~~~~-------  136 (318)
T 2fk8_A           74 AQYAKVDLNLDKL----DLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARC-----EQVLASI-------  136 (318)
T ss_dssp             HHHHHHHHHHTTS----CCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHHHHTS-------
T ss_pred             HHHHHHHHHHHhc----CCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHH-----HHHHHhc-------
Confidence            3344555555442    2457889999999999999888876 76 899999999998542     2232210       


Q ss_pred             CCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 020125          155 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS  234 (330)
Q Consensus       155 ~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~  234 (330)
                                .+..++.+..+|..+                                                       
T Consensus       137 ----------~~~~~v~~~~~d~~~-------------------------------------------------------  151 (318)
T 2fk8_A          137 ----------DTNRSRQVLLQGWED-------------------------------------------------------  151 (318)
T ss_dssp             ----------CCSSCEEEEESCGGG-------------------------------------------------------
T ss_pred             ----------CCCCceEEEECChHH-------------------------------------------------------
Confidence                      122345555444211                                                       


Q ss_pred             hhhhhhcccccCCCCccEEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          235 RAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       235 ~~w~~~~~~~~~~~~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                                 ..++||+|++.+++...  .....+++.+.++|+ |+|++++..
T Consensus       152 -----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  194 (318)
T 2fk8_A          152 -----------FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQS  194 (318)
T ss_dssp             -----------CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred             -----------CCCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence                       01579999999999876  678889999999997 899988764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.04  E-value=4.2e-09  Score=93.25  Aligned_cols=136  Identities=19%  Similarity=0.181  Sum_probs=95.0

Q ss_pred             HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCC
Q 020125           80 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL  159 (330)
Q Consensus        80 La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~  159 (330)
                      ..+++.+...   ...++.+|||+|||+|..+..++..+. +|+++|+++.+++.+     +.+                
T Consensus        29 ~~~~~~~~l~---~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~----------------   83 (250)
T 2p7i_A           29 MHPFMVRAFT---PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHA-----QGR----------------   83 (250)
T ss_dssp             HHHHHHHHHG---GGCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHH-----HHH----------------
T ss_pred             HHHHHHHHHH---hhcCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHH-----HHh----------------
Confidence            3444544432   234788999999999999999988876 899999999987442     111                


Q ss_pred             CCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhh
Q 020125          160 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWER  239 (330)
Q Consensus       160 ~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~  239 (330)
                            ...++++..+|..+.                                                           
T Consensus        84 ------~~~~v~~~~~d~~~~-----------------------------------------------------------   98 (250)
T 2p7i_A           84 ------LKDGITYIHSRFEDA-----------------------------------------------------------   98 (250)
T ss_dssp             ------SCSCEEEEESCGGGC-----------------------------------------------------------
T ss_pred             ------hhCCeEEEEccHHHc-----------------------------------------------------------
Confidence                  011455555543221                                                           


Q ss_pred             hcccccCCCCccEEEEeccccCcccHHHHHHHHH-HHcCCCCcEEEEEecccc------------c-------------c
Q 020125          240 ASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIK-KCLRPPYGVVYLATKKNY------------V-------------G  293 (330)
Q Consensus       240 ~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~-~~L~~p~Gv~~lA~k~~y------------f-------------G  293 (330)
                           ...+.||+|++..+++.......+++-+. ++|+ |+|++++......            +             +
T Consensus        99 -----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
T 2p7i_A           99 -----QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLA-EGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHG  172 (250)
T ss_dssp             -----CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEE-EEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTT
T ss_pred             -----CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcC-CCCEEEEEcCChHHHHHHHHHHcCccccchhccccccccc
Confidence                 12367999999999999888889999999 9997 8999988753211            0             0


Q ss_pred             --ccccHHHHHHhhhhcCce
Q 020125          294 --FNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       294 --v~gg~~~F~~~vee~G~f  311 (330)
                        ..-+..++.+++++.|+-
T Consensus       173 ~~~~~~~~~~~~~l~~~Gf~  192 (250)
T 2p7i_A          173 HRCTYALDTLERDASRAGLQ  192 (250)
T ss_dssp             CCCCCCHHHHHHHHHHTTCE
T ss_pred             ccccCCHHHHHHHHHHCCCe
Confidence              011567889999999963

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.03  E-value=1.4e-08  Score=90.03  Aligned_cols=120  Identities=18%  Similarity=0.165  Sum_probs=84.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ..++.+|||+|||+|..++.+++.+ .+|++.|+++++++.+ +.|+..|                     .+..++++.
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a-~~~~~~~---------------------g~~~~v~~~  109 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENI-QKNIDTY---------------------GLSPRMRAV  109 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHH-HHHHHHT---------------------TCTTTEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHH-HHHHHHc---------------------CCCCCEEEE
Confidence            3468899999999999999999884 5899999999998652 3333322                     122256666


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+..                                                               .....||+|
T Consensus       110 ~~d~~~~~---------------------------------------------------------------~~~~~~D~v  126 (204)
T 3njr_A          110 QGTAPAAL---------------------------------------------------------------ADLPLPEAV  126 (204)
T ss_dssp             ESCTTGGG---------------------------------------------------------------TTSCCCSEE
T ss_pred             eCchhhhc---------------------------------------------------------------ccCCCCCEE
Confidence            66643210                                                               012469999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCc
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  310 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~  310 (330)
                      +..-.+    ..+ +++.+.+.|+ |+|++++..-..     ....++.+.+++.|+
T Consensus       127 ~~~~~~----~~~-~l~~~~~~Lk-pgG~lv~~~~~~-----~~~~~~~~~l~~~g~  172 (204)
T 3njr_A          127 FIGGGG----SQA-LYDRLWEWLA-PGTRIVANAVTL-----ESETLLTQLHARHGG  172 (204)
T ss_dssp             EECSCC----CHH-HHHHHHHHSC-TTCEEEEEECSH-----HHHHHHHHHHHHHCS
T ss_pred             EECCcc----cHH-HHHHHHHhcC-CCcEEEEEecCc-----ccHHHHHHHHHhCCC
Confidence            976533    344 7888888886 899988876432     467888899999883

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.02  E-value=1.8e-08  Score=88.61  Aligned_cols=103  Identities=21%  Similarity=0.364  Sum_probs=76.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      .+++|||+|||+|..++.++..+. +|+++|+++.+++.     ...|...+                   ..++++..+
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~-------------------~~~~~~~~~   92 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRK-----AREYAKSR-------------------ESNVEFIVG   92 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHT-------------------TCCCEEEEC
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHH-----HHHHHHhc-------------------CCCceEEEC
Confidence            378999999999999999988877 99999999999854     23333211                   124566666


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |..+.+                                                               ...++||+|++
T Consensus        93 d~~~~~---------------------------------------------------------------~~~~~~D~v~~  109 (227)
T 1ve3_A           93 DARKLS---------------------------------------------------------------FEDKTFDYVIF  109 (227)
T ss_dssp             CTTSCC---------------------------------------------------------------SCTTCEEEEEE
T ss_pred             chhcCC---------------------------------------------------------------CCCCcEEEEEE
Confidence            643311                                                               12358999999


Q ss_pred             ecc--ccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          256 TEI--PYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       256 sD~--iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      .++  .+.......+++.+.++|+ |+|++++..
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~  142 (227)
T 1ve3_A          110 IDSIVHFEPLELNQVFKEVRRVLK-PSGKFIMYF  142 (227)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             cCchHhCCHHHHHHHHHHHHHHcC-CCcEEEEEe
Confidence            999  7777777888888888997 889888763

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.02  E-value=5.6e-09  Score=95.25  Aligned_cols=119  Identities=23%  Similarity=0.366  Sum_probs=85.3

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  156 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~  156 (330)
                      ..+.+++...    ...-++++|||+|||+|...+.++..+ ..+|+++|+++.+++.     ...|....         
T Consensus        23 ~~l~~~l~~~----~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~---------   84 (276)
T 3mgg_A           23 ETLEKLLHHD----TVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEK-----ARENTEKN---------   84 (276)
T ss_dssp             CHHHHHHHTT----CCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHH-----HHHHHHHT---------
T ss_pred             HHHHHHHhhc----ccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHHHHHc---------
Confidence            3445555433    234578899999999999999888764 4599999999998854     23333211         


Q ss_pred             CCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 020125          157 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA  236 (330)
Q Consensus       157 s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~  236 (330)
                              .+ +++.+..+|....+                                                       
T Consensus        85 --------~~-~~~~~~~~d~~~~~-------------------------------------------------------  100 (276)
T 3mgg_A           85 --------GI-KNVKFLQANIFSLP-------------------------------------------------------  100 (276)
T ss_dssp             --------TC-CSEEEEECCGGGCC-------------------------------------------------------
T ss_pred             --------CC-CCcEEEEcccccCC-------------------------------------------------------
Confidence                    01 24666665543311                                                       


Q ss_pred             hhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          237 WERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       237 w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                              ...++||+|++..+++.......+++.+.++|+ |+|++++..
T Consensus       101 --------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~  142 (276)
T 3mgg_A          101 --------FEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLK-PGGTITVIE  142 (276)
T ss_dssp             --------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             --------CCCCCeeEEEEechhhhcCCHHHHHHHHHHHcC-CCcEEEEEE
Confidence                    124689999999999999999999999999997 899988864

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.02  E-value=7.3e-09  Score=88.91  Aligned_cols=40  Identities=15%  Similarity=0.066  Sum_probs=35.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .-+|.+|||+|||+|..++.++.. ..+|++.|+++.+++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~   59 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGK   59 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHH
Confidence            346899999999999999999988 4599999999999865

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.01  E-value=2.1e-09  Score=94.38  Aligned_cols=120  Identities=15%  Similarity=0.126  Sum_probs=85.0

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      .|-....+.+++....    ...++++|||+|||+|..++.++..+. +|+++|+++.+++.     ...|..       
T Consensus        32 ~~~~~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~-------   94 (216)
T 3ofk_A           32 NPFERERHTQLLRLSL----SSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGR-----ACQRTK-------   94 (216)
T ss_dssp             CHHHHHHHHHHHHHHT----TTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHH-----HHHHTT-------
T ss_pred             CHhHHHHHHHHHHHHc----ccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHH-----HHHhcc-------
Confidence            5555556666665442    234678999999999999999988875 89999999998854     222221       


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                   -.+++++..+|..+.+                                                   
T Consensus        95 -------------~~~~~~~~~~d~~~~~---------------------------------------------------  110 (216)
T 3ofk_A           95 -------------RWSHISWAATDILQFS---------------------------------------------------  110 (216)
T ss_dssp             -------------TCSSEEEEECCTTTCC---------------------------------------------------
T ss_pred             -------------cCCCeEEEEcchhhCC---------------------------------------------------
Confidence                         0125666666643311                                                   


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccH---HHHHHHHHHHcCCCCcEEEEEe
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSL---KKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~---~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                                   ..++||+|++..+++.....   ..+++.+.++|+ |+|++++.+
T Consensus       111 -------------~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~  154 (216)
T 3ofk_A          111 -------------TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLA-PGGHLVFGS  154 (216)
T ss_dssp             -------------CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             -------------CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence                         23689999999999877665   455777777886 899999875

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.01  E-value=8.5e-09  Score=95.28  Aligned_cols=107  Identities=14%  Similarity=0.201  Sum_probs=80.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      ..++++|||+|||+|..++.++.. + ..+|+++|+++.+++.     .+.|...                   ...+++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~-------------------~~~~v~   75 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE-----ARELFRL-------------------LPYDSE   75 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHH-----HHHHHHS-------------------SSSEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHh-------------------cCCceE
Confidence            347889999999999999988865 2 3589999999998854     2333221                   122577


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      |..+|..+.+                                                                ..++||
T Consensus        76 ~~~~d~~~~~----------------------------------------------------------------~~~~fD   91 (284)
T 3gu3_A           76 FLEGDATEIE----------------------------------------------------------------LNDKYD   91 (284)
T ss_dssp             EEESCTTTCC----------------------------------------------------------------CSSCEE
T ss_pred             EEEcchhhcC----------------------------------------------------------------cCCCee
Confidence            7666644311                                                                125899


Q ss_pred             EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecc
Q 020125          252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK  289 (330)
Q Consensus       252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~  289 (330)
                      +|++..+++.....+.+++-+.++|+ |+|.+++....
T Consensus        92 ~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  128 (284)
T 3gu3_A           92 IAICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFEPH  128 (284)
T ss_dssp             EEEEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEECC
T ss_pred             EEEECChhhcCCCHHHHHHHHHHHcC-CCCEEEEEecc
Confidence            99999999999999999999999996 88998877543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.01  E-value=7.6e-10  Score=97.71  Aligned_cols=111  Identities=17%  Similarity=0.228  Sum_probs=76.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCC-Cceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~-~~v~~~  173 (330)
                      .++++|||+|||+|..++.++..++.+|++.|+++.+++.+ +.|+..|.                     +. .++.+.
T Consensus        52 ~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a-~~~~~~~~---------------------~~~~~v~~~  109 (201)
T 2ift_A           52 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQL-KKNLQTLK---------------------CSSEQAEVI  109 (201)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHHHHTT---------------------CCTTTEEEE
T ss_pred             cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHH-HHHHHHhC---------------------CCccceEEE
Confidence            36889999999999999987777888999999999998652 33433221                     11 256666


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCC-ccE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGG-YDV  252 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~-fDv  252 (330)
                      .+|..+..                                                  .           ....+. ||+
T Consensus       110 ~~d~~~~~--------------------------------------------------~-----------~~~~~~~fD~  128 (201)
T 2ift_A          110 NQSSLDFL--------------------------------------------------K-----------QPQNQPHFDV  128 (201)
T ss_dssp             CSCHHHHT--------------------------------------------------T-----------SCCSSCCEEE
T ss_pred             ECCHHHHH--------------------------------------------------H-----------hhccCCCCCE
Confidence            66532210                                                  0           001357 999


Q ss_pred             EEEeccccCcccHHHHHHHHH--HHcCCCCcEEEEEeccc
Q 020125          253 ILLTEIPYSVTSLKKLYLLIK--KCLRPPYGVVYLATKKN  290 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~--~~L~~p~Gv~~lA~k~~  290 (330)
                      |++.-. |.....+.+++.+.  ++|+ |+|++++.....
T Consensus       129 I~~~~~-~~~~~~~~~l~~~~~~~~Lk-pgG~l~i~~~~~  166 (201)
T 2ift_A          129 VFLDPP-FHFNLAEQAISLLCENNWLK-PNALIYVETEKD  166 (201)
T ss_dssp             EEECCC-SSSCHHHHHHHHHHHTTCEE-EEEEEEEEEESS
T ss_pred             EEECCC-CCCccHHHHHHHHHhcCccC-CCcEEEEEECCC
Confidence            997554 77777777777774  4576 899999887554

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.01  E-value=2.6e-09  Score=93.49  Aligned_cols=130  Identities=18%  Similarity=0.193  Sum_probs=89.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++++|||+|||+|..+..++..|+ +|+++|+++.+++.+     +.|                        ..+.+..
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~------------------------~~~~~~~  100 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAA-----RAA------------------------GAGEVHL  100 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHH-----HHT------------------------CSSCEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHH-----HHh------------------------cccccch
Confidence            3578999999999999999988877 899999999987542     111                        1122333


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|......                                                           .......+||+|+
T Consensus       101 ~~~~~~~~-----------------------------------------------------------~~~~~~~~fD~v~  121 (227)
T 3e8s_A          101 ASYAQLAE-----------------------------------------------------------AKVPVGKDYDLIC  121 (227)
T ss_dssp             CCHHHHHT-----------------------------------------------------------TCSCCCCCEEEEE
T ss_pred             hhHHhhcc-----------------------------------------------------------cccccCCCccEEE
Confidence            33222100                                                           0001235699999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc----------------cccccc----------cHHHHHHhhhhc
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGFNN----------AARHLRSLVDEE  308 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~----------------yfGv~g----------g~~~F~~~vee~  308 (330)
                      +..+++ ......+++.+.++|+ |+|++++.....                +.+..+          +..++.+++++.
T Consensus       122 ~~~~l~-~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  199 (227)
T 3e8s_A          122 ANFALL-HQDIIELLSAMRTLLV-PGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMA  199 (227)
T ss_dssp             EESCCC-SSCCHHHHHHHHHTEE-EEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHT
T ss_pred             ECchhh-hhhHHHHHHHHHHHhC-CCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHc
Confidence            999999 7777888888999996 899999875311                111111          578999999999


Q ss_pred             CceeEEE
Q 020125          309 GIFGAHL  315 (330)
Q Consensus       309 G~f~~~~  315 (330)
                      |+-..++
T Consensus       200 Gf~~~~~  206 (227)
T 3e8s_A          200 GLRLVSL  206 (227)
T ss_dssp             TEEEEEE
T ss_pred             CCeEEEE
Confidence            9644444

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.00  E-value=2.1e-09  Score=99.94  Aligned_cols=128  Identities=15%  Similarity=0.148  Sum_probs=87.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      +|++|||+|||+|..++.+++.|+.+|++.|+++.+++. ...|+..|.                     +..++++..+
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~-a~~n~~~n~---------------------~~~~v~~~~~  182 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF-LVENIHLNK---------------------VEDRMSAYNM  182 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHH-HHHHHHHTT---------------------CTTTEEEECS
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCceEEEEEC
Confidence            489999999999999999999888789999999999865 244554441                     2234667666


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |..+..                                                                ....||+|++
T Consensus       183 D~~~~~----------------------------------------------------------------~~~~fD~Vi~  198 (278)
T 2frn_A          183 DNRDFP----------------------------------------------------------------GENIADRILM  198 (278)
T ss_dssp             CTTTCC----------------------------------------------------------------CCSCEEEEEE
T ss_pred             CHHHhc----------------------------------------------------------------ccCCccEEEE
Confidence            643311                                                                1357999987


Q ss_pred             eccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc-cccccccHHHHHHhhhhcCceeEEE
Q 020125          256 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-YVGFNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       256 sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~-yfGv~gg~~~F~~~vee~G~f~~~~  315 (330)
                       |..+.   ...+++.+.++|+ |+|++++.+-.. ..........+.+.+++.|+ ..+.
T Consensus       199 -~~p~~---~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~-~~~~  253 (278)
T 2frn_A          199 -GYVVR---THEFIPKALSIAK-DGAIIHYHNTVPEKLMPREPFETFKRITKEYGY-DVEK  253 (278)
T ss_dssp             -CCCSS---GGGGHHHHHHHEE-EEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC-EEEE
T ss_pred             -CCchh---HHHHHHHHHHHCC-CCeEEEEEEeeccccccccHHHHHHHHHHHcCC-eeEE
Confidence             43333   2456666667886 889888765332 11123456778888888885 4443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.00  E-value=3.2e-09  Score=103.74  Aligned_cols=135  Identities=21%  Similarity=0.235  Sum_probs=94.4

Q ss_pred             CCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           64 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        64 ~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +|.|..+ .....+..|.+++.+...  ....++++|||+|||+|..++.+++.++ +|+++|+++.+++.+ +.|+..|
T Consensus       204 pgvFs~~-~~d~~t~~ll~~l~~~l~--~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A-~~n~~~~  278 (381)
T 3dmg_A          204 PGVFSAG-KVDPASLLLLEALQERLG--PEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSL-QKGLEAN  278 (381)
T ss_dssp             TTCTTTT-SCCHHHHHHHHHHHHHHC--TTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHH-HHHHHHT
T ss_pred             CCceeCC-CCCHHHHHHHHHHHHhhc--ccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHH-HHHHHHc
Confidence            4555433 256777788888876531  1245789999999999999999999877 999999999998652 3444333


Q ss_pred             HHHhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCC
Q 020125          144 LEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDS  223 (330)
Q Consensus       144 ~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~  223 (330)
                      .                     +  +++|..+|+.+..                                          
T Consensus       279 ~---------------------~--~v~~~~~D~~~~~------------------------------------------  293 (381)
T 3dmg_A          279 A---------------------L--KAQALHSDVDEAL------------------------------------------  293 (381)
T ss_dssp             T---------------------C--CCEEEECSTTTTS------------------------------------------
T ss_pred             C---------------------C--CeEEEEcchhhcc------------------------------------------
Confidence            1                     1  2556666543310                                          


Q ss_pred             cccccccccCchhhhhhcccccCCCCccEEEEeccccC-----cccHHHHHHHHHHHcCCCCcEEEEEeccc
Q 020125          224 SSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYS-----VTSLKKLYLLIKKCLRPPYGVVYLATKKN  290 (330)
Q Consensus       224 ~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~-----~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~  290 (330)
                                           ...++||+|++...+..     ......+++.+.++|+ |+|++++.+.++
T Consensus       294 ---------------------~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lk-pGG~l~iv~n~~  343 (381)
T 3dmg_A          294 ---------------------TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLR-PGGVFFLVSNPF  343 (381)
T ss_dssp             ---------------------CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEE-EEEEEEEEECTT
T ss_pred             ---------------------ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcC-cCcEEEEEEcCC
Confidence                                 12368999998766554     4556778888888997 899999987665

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.00  E-value=4.5e-09  Score=95.37  Aligned_cols=97  Identities=18%  Similarity=0.194  Sum_probs=71.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      ++++|||+|||+|..++.++..+. +|+++|+++.+++.+     ..|.                       +++++..+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~~-----------------------~~~~~~~~  100 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIA-----RRRN-----------------------PDAVLHHG  100 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHH-----HHHC-----------------------TTSEEEEC
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCEEEEC
Confidence            568999999999999999988876 899999999988542     1110                       14556566


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |..+.+                                                                ..++||+|++
T Consensus       101 d~~~~~----------------------------------------------------------------~~~~fD~v~~  116 (263)
T 3pfg_A          101 DMRDFS----------------------------------------------------------------LGRRFSAVTC  116 (263)
T ss_dssp             CTTTCC----------------------------------------------------------------CSCCEEEEEE
T ss_pred             ChHHCC----------------------------------------------------------------ccCCcCEEEE
Confidence            543311                                                                1368999999


Q ss_pred             ec-cccCc---ccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          256 TE-IPYSV---TSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       256 sD-~iY~~---~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      .. ++..-   +....+++.+.++|+ |+|++++.
T Consensus       117 ~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~i~  150 (263)
T 3pfg_A          117 MFSSIGHLAGQAELDAALERFAAHVL-PDGVVVVE  150 (263)
T ss_dssp             CTTGGGGSCHHHHHHHHHHHHHHTEE-EEEEEEEC
T ss_pred             cCchhhhcCCHHHHHHHHHHHHHhcC-CCcEEEEE
Confidence            97 77665   456677777888886 88998885

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.99  E-value=6.4e-09  Score=88.61  Aligned_cols=123  Identities=18%  Similarity=0.251  Sum_probs=87.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      ++++|||+|||+|..++.++..+. +|+++|+++.+++.+     ..|.                       +++++..+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a-----~~~~-----------------------~~~~~~~~   96 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYA-----KQDF-----------------------PEARWVVG   96 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHC-----------------------TTSEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHH-----HHhC-----------------------CCCcEEEc
Confidence            678999999999999999888876 899999999987542     2221                       12444455


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |....+                                                               ...++||+|++
T Consensus        97 d~~~~~---------------------------------------------------------------~~~~~~D~i~~  113 (195)
T 3cgg_A           97 DLSVDQ---------------------------------------------------------------ISETDFDLIVS  113 (195)
T ss_dssp             CTTTSC---------------------------------------------------------------CCCCCEEEEEE
T ss_pred             ccccCC---------------------------------------------------------------CCCCceeEEEE
Confidence            433210                                                               12368999999


Q ss_pred             e-ccccCc--ccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEE
Q 020125          256 T-EIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       256 s-D~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~  314 (330)
                      . ++++..  +....+++.+.++|+ |+|++++......   +-...++.+.+++.|+-..+
T Consensus       114 ~~~~~~~~~~~~~~~~l~~~~~~l~-~~G~l~~~~~~~~---~~~~~~~~~~l~~~Gf~~~~  171 (195)
T 3cgg_A          114 AGNVMGFLAEDGREPALANIHRALG-ADGRAVIGFGAGR---GWVFGDFLEVAERVGLELEN  171 (195)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEETTS---SCCHHHHHHHHHHHTEEEEE
T ss_pred             CCcHHhhcChHHHHHHHHHHHHHhC-CCCEEEEEeCCCC---CcCHHHHHHHHHHcCCEEee
Confidence            8 776544  445778888888896 8899888754321   23678999999999963333

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.99  E-value=8.2e-09  Score=87.26  Aligned_cols=129  Identities=12%  Similarity=0.108  Sum_probs=91.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      -++++|||+|||+|..++.++..+. +|++.|+++.+++.+     ..|                       .+++++..
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~-----------------------~~~v~~~~   66 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEV-----KEK-----------------------FDSVITLS   66 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHH-----HHH-----------------------CTTSEEES
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHH-----HHh-----------------------CCCcEEEe
Confidence            3678999999999999999988876 999999999988542     111                       02355554


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|   .+                                                               ...++||+|+
T Consensus        67 ~d---~~---------------------------------------------------------------~~~~~~D~v~   80 (170)
T 3i9f_A           67 DP---KE---------------------------------------------------------------IPDNSVDFIL   80 (170)
T ss_dssp             SG---GG---------------------------------------------------------------SCTTCEEEEE
T ss_pred             CC---CC---------------------------------------------------------------CCCCceEEEE
Confidence            44   10                                                               1246899999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc---cc----ccccHHHHHHhhhhcCceeEEEEeecCCc
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY---VG----FNNAARHLRSLVDEEGIFGAHLIKEMTDR  322 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y---fG----v~gg~~~F~~~vee~G~f~~~~~~e~~d~  322 (330)
                      +.++++.......+++.+.+.|+ |+|++++..-...   ++    ..-...++.++++  |+ ....+.+....
T Consensus        81 ~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf-~~~~~~~~~~~  151 (170)
T 3i9f_A           81 FANSFHDMDDKQHVISEVKRILK-DDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NF-VVEKRFNPTPY  151 (170)
T ss_dssp             EESCSTTCSCHHHHHHHHHHHEE-EEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TE-EEEEEECSSTT
T ss_pred             EccchhcccCHHHHHHHHHHhcC-CCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--Cc-EEEEccCCCCc
Confidence            99999999999999999999997 8899888742211   11    0114678888888  74 54444444443

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.99  E-value=7.7e-10  Score=101.48  Aligned_cols=41  Identities=10%  Similarity=0.289  Sum_probs=36.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..+|++|||+|||+|+..+.++..|+.+|+++|+++.+++.
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~   93 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREE   93 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHH
Confidence            46889999999999988888888888899999999999976

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.99  E-value=9.7e-09  Score=99.51  Aligned_cols=149  Identities=23%  Similarity=0.253  Sum_probs=101.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      ..++++|||+|||+|..++.++..  ...+|+++|+++.+++.+ ..|+..+.....   ..           ...++++
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a-~~~~~~~~~~~~---g~-----------~~~~~v~  145 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVA-RKYVEYHAEKFF---GS-----------PSRSNVR  145 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHH-HHTHHHHHHHHH---SS-----------TTCCCEE
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHH-HHHHHHhhhhcc---cc-----------cCCCceE
Confidence            457899999999999999887764  234999999999998663 455544422100   00           0114688


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      |..+|+.....+.                                                         ......+.||
T Consensus       146 ~~~~d~~~l~~~~---------------------------------------------------------~~~~~~~~fD  168 (383)
T 4fsd_A          146 FLKGFIENLATAE---------------------------------------------------------PEGVPDSSVD  168 (383)
T ss_dssp             EEESCTTCGGGCB---------------------------------------------------------SCCCCTTCEE
T ss_pred             EEEccHHHhhhcc---------------------------------------------------------cCCCCCCCEE
Confidence            8888876632100                                                         0001346899


Q ss_pred             EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc-------------cc----ccccHHHHHHhhhhcCceeEE
Q 020125          252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-------------VG----FNNAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y-------------fG----v~gg~~~F~~~vee~G~f~~~  314 (330)
                      +|++..+++.......+++-+.++|+ |+|++++..-...             ++    -.-...++.+++++.|+-.++
T Consensus       169 ~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~  247 (383)
T 4fsd_A          169 IVISNCVCNLSTNKLALFKEIHRVLR-DGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVR  247 (383)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCEE
T ss_pred             EEEEccchhcCCCHHHHHHHHHHHcC-CCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceEE
Confidence            99999999998889999999999997 8999888632110             00    012458899999999974444


Q ss_pred             E
Q 020125          315 L  315 (330)
Q Consensus       315 ~  315 (330)
                      +
T Consensus       248 ~  248 (383)
T 4fsd_A          248 L  248 (383)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.98  E-value=4.8e-09  Score=90.25  Aligned_cols=104  Identities=23%  Similarity=0.341  Sum_probs=76.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++++|||+|||+|..++.++..|. +|+++|+++.+++.     .+.|....                 .+ +++++..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~-----------------~~-~~~~~~~   86 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIAN-----VERIKSIE-----------------NL-DNLHTRV   86 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHH-----------------TC-TTEEEEE
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHH-----HHHHHHhC-----------------CC-CCcEEEE
Confidence            4678999999999999999988876 89999999999854     23333211                 01 2355555


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+.+                                                                ..++||+|+
T Consensus        87 ~d~~~~~----------------------------------------------------------------~~~~~D~v~  102 (199)
T 2xvm_A           87 VDLNNLT----------------------------------------------------------------FDRQYDFIL  102 (199)
T ss_dssp             CCGGGCC----------------------------------------------------------------CCCCEEEEE
T ss_pred             cchhhCC----------------------------------------------------------------CCCCceEEE
Confidence            5532210                                                                136899999


Q ss_pred             EeccccCcc--cHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          255 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       255 asD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +..+++...  ....+++.+.+.|+ |+|++++..
T Consensus       103 ~~~~l~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~  136 (199)
T 2xvm_A          103 STVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVA  136 (199)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEE
Confidence            999998665  78889999999997 889877653

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.98  E-value=1.2e-09  Score=94.74  Aligned_cols=55  Identities=22%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHH
Q 020125           77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC  134 (330)
Q Consensus        77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~  134 (330)
                      +..+++++.+...   ...++++|||+|||+|..++.++..+. .+|+++|+++.+++.
T Consensus        14 ~~~~~~~~~~~l~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~   69 (215)
T 4dzr_A           14 TEVLVEEAIRFLK---RMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAV   69 (215)
T ss_dssp             HHHHHHHHHHHHT---TCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------
T ss_pred             HHHHHHHHHHHhh---hcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            4556666665541   125788999999999999999888753 489999999999865

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.98  E-value=1.8e-09  Score=95.33  Aligned_cols=109  Identities=13%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      +++++|||+|||+|..++.++..|+.+|++.|+++.+++.+ +.|+..|                     .+ .++++..
T Consensus        53 ~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a-~~~~~~~---------------------~~-~~v~~~~  109 (202)
T 2fpo_A           53 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQL-IKNLATL---------------------KA-GNARVVN  109 (202)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHHHHT---------------------TC-CSEEEEC
T ss_pred             cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHH-HHHHHHc---------------------CC-CcEEEEE
Confidence            36889999999999999988878888999999999998652 3333322                     11 2466666


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+.   +                                                           ......||+|+
T Consensus       110 ~D~~~~---~-----------------------------------------------------------~~~~~~fD~V~  127 (202)
T 2fpo_A          110 SNAMSF---L-----------------------------------------------------------AQKGTPHNIVF  127 (202)
T ss_dssp             SCHHHH---H-----------------------------------------------------------SSCCCCEEEEE
T ss_pred             CCHHHH---H-----------------------------------------------------------hhcCCCCCEEE
Confidence            653220   0                                                           01235799998


Q ss_pred             EeccccCcccHHHHHHHHHHH--cCCCCcEEEEEeccc
Q 020125          255 LTEIPYSVTSLKKLYLLIKKC--LRPPYGVVYLATKKN  290 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~--L~~p~Gv~~lA~k~~  290 (330)
                      +. ..|.....+.+++.+.+.  |+ |+|++++.....
T Consensus       128 ~~-~p~~~~~~~~~l~~l~~~~~L~-pgG~l~i~~~~~  163 (202)
T 2fpo_A          128 VD-PPFRRGLLEETINLLEDNGWLA-DEALIYVESEVE  163 (202)
T ss_dssp             EC-CSSSTTTHHHHHHHHHHTTCEE-EEEEEEEEEEGG
T ss_pred             EC-CCCCCCcHHHHHHHHHhcCccC-CCcEEEEEECCC
Confidence            64 458877788888888763  75 899999886544

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.98  E-value=3.4e-09  Score=97.52  Aligned_cols=103  Identities=19%  Similarity=0.238  Sum_probs=76.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++.+|||+|||+|..++.++..|+ +|+++|+++.+++.     .+.|...+                 .+  ++++..
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~-----a~~~~~~~-----------------~~--~~~~~~  173 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAF-----LNETKEKE-----------------NL--NISTAL  173 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHT-----------------TC--CEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHH-----HHHHHHHc-----------------CC--ceEEEE
Confidence            3789999999999999999998887 89999999999855     23333211                 11  456665


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+.                                                                ...++||+|+
T Consensus       174 ~d~~~~----------------------------------------------------------------~~~~~fD~i~  189 (286)
T 3m70_A          174 YDINAA----------------------------------------------------------------NIQENYDFIV  189 (286)
T ss_dssp             CCGGGC----------------------------------------------------------------CCCSCEEEEE
T ss_pred             eccccc----------------------------------------------------------------cccCCccEEE
Confidence            553221                                                                0146899999


Q ss_pred             Eecccc--CcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          255 LTEIPY--SVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       255 asD~iY--~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +..+++  .+.....+++.+.++|+ |+|++++..
T Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~  223 (286)
T 3m70_A          190 STVVFMFLNRERVPSIIKNMKEHTN-VGGYNLIVA  223 (286)
T ss_dssp             ECSSGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             EccchhhCCHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence            999998  44667889999999996 889876653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.97  E-value=2.8e-09  Score=101.50  Aligned_cols=104  Identities=22%  Similarity=0.310  Sum_probs=75.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ..++++|||+|||+|..++.+++.|+++|+++|.+ .+++. ...|+..|                     .+..++++.
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~-a~~~~~~~---------------------~~~~~i~~~   92 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEM-AKELVELN---------------------GFSDKITLL   92 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHH-HHHHHHHT---------------------TCTTTEEEE
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHH-HHHHHHHc---------------------CCCCCEEEE
Confidence            45789999999999999999999998899999999 46644 23444333                     123457776


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.+                                                               ...++||+|
T Consensus        93 ~~d~~~~~---------------------------------------------------------------~~~~~~D~I  109 (328)
T 1g6q_1           93 RGKLEDVH---------------------------------------------------------------LPFPKVDII  109 (328)
T ss_dssp             ESCTTTSC---------------------------------------------------------------CSSSCEEEE
T ss_pred             ECchhhcc---------------------------------------------------------------CCCCcccEE
Confidence            66644321                                                               023589999


Q ss_pred             EEec---cccCcccHHHHHHHHHHHcCCCCcEEE
Q 020125          254 LLTE---IPYSVTSLKKLYLLIKKCLRPPYGVVY  284 (330)
Q Consensus       254 LasD---~iY~~~~~~~L~~~i~~~L~~p~Gv~~  284 (330)
                      ++.-   .+......+.++..+.++|+ |+|+++
T Consensus       110 vs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li  142 (328)
T 1g6q_1          110 ISEWMGYFLLYESMMDTVLYARDHYLV-EGGLIF  142 (328)
T ss_dssp             EECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEeCchhhcccHHHHHHHHHHHHhhcC-CCeEEE
Confidence            9863   44456678888888888997 888876

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.97  E-value=1.9e-09  Score=97.06  Aligned_cols=41  Identities=7%  Similarity=0.259  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++++|||+|||+|..++.++..++.+|+++|+++.+++.
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~   94 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWE   94 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHH
Confidence            46789999999999999999888877789999999999865

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.97  E-value=1.8e-08  Score=86.54  Aligned_cols=51  Identities=25%  Similarity=0.302  Sum_probs=41.0

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHH
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  133 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~  133 (330)
                      +.+..|++++...      ..++++|||+|||+|..++.++..+  +|+++|+++.+++
T Consensus         8 ~~~~~l~~~l~~~------~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~   58 (170)
T 3q87_B            8 EDTYTLMDALERE------GLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALE   58 (170)
T ss_dssp             HHHHHHHHHHHHH------TCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHH
T ss_pred             ccHHHHHHHHHhh------cCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHh
Confidence            4455666665432      2467899999999999999999887  9999999999884

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.97  E-value=7e-09  Score=95.59  Aligned_cols=148  Identities=13%  Similarity=0.153  Sum_probs=97.3

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhcc
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  153 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~  153 (330)
                      +.+..+++++.+...     .++.+|||+|||+|..++.++. .+..+|+++|+++.+++. ...|+..|.         
T Consensus        93 ~~te~l~~~~l~~~~-----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~-a~~n~~~~~---------  157 (276)
T 2b3t_A           93 PDTECLVEQALARLP-----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSL-AQRNAQHLA---------  157 (276)
T ss_dssp             TTHHHHHHHHHHHSC-----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHH-HHHHHHHHT---------
T ss_pred             chHHHHHHHHHHhcc-----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHcC---------
Confidence            446667777765531     3578999999999999999885 345599999999999865 234443331         


Q ss_pred             CCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 020125          154 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG  233 (330)
Q Consensus       154 ~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~  233 (330)
                                  + .+++|..+||.+..                                                    
T Consensus       158 ------------~-~~v~~~~~d~~~~~----------------------------------------------------  172 (276)
T 2b3t_A          158 ------------I-KNIHILQSDWFSAL----------------------------------------------------  172 (276)
T ss_dssp             ------------C-CSEEEECCSTTGGG----------------------------------------------------
T ss_pred             ------------C-CceEEEEcchhhhc----------------------------------------------------
Confidence                        1 24777777764310                                                    


Q ss_pred             chhhhhhcccccCCCCccEEEEe-------------ccc-cCc-----------ccHHHHHHHHHHHcCCCCcEEEEEec
Q 020125          234 SRAWERASEADQGEGGYDVILLT-------------EIP-YSV-----------TSLKKLYLLIKKCLRPPYGVVYLATK  288 (330)
Q Consensus       234 ~~~w~~~~~~~~~~~~fDvILas-------------D~i-Y~~-----------~~~~~L~~~i~~~L~~p~Gv~~lA~k  288 (330)
                                  ..++||+|++.             +++ |.+           ..+..+++.+.++|+ |+|++++...
T Consensus       173 ------------~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk-pgG~l~~~~~  239 (276)
T 2b3t_A          173 ------------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLLEHG  239 (276)
T ss_dssp             ------------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEEECC
T ss_pred             ------------ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence                        12468888875             232 222           245667777777886 8899887643


Q ss_pred             cccccccccHHHHHHhhhhcCceeEEEEeecCC
Q 020125          289 KNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTD  321 (330)
Q Consensus       289 ~~yfGv~gg~~~F~~~vee~G~f~~~~~~e~~d  321 (330)
                      .      ....++.+++++.|+-.+++..+...
T Consensus       240 ~------~~~~~~~~~l~~~Gf~~v~~~~d~~g  266 (276)
T 2b3t_A          240 W------QQGEAVRQAFILAGYHDVETCRDYGD  266 (276)
T ss_dssp             S------SCHHHHHHHHHHTTCTTCCEEECTTS
T ss_pred             c------hHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            2      24577888888888644555555443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.97  E-value=3.6e-09  Score=101.61  Aligned_cols=105  Identities=27%  Similarity=0.307  Sum_probs=78.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .+++++|||+|||+|..++.++..|+++|+++|+++ +++. .+.|+..|.                     +..++++.
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~-a~~~~~~~~---------------------~~~~v~~~  120 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDY-AVKIVKANK---------------------LDHVVTII  120 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHH-HHHHHHHTT---------------------CTTTEEEE
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHH-HHHHHHHcC---------------------CCCcEEEE
Confidence            568999999999999999999999999999999995 7754 233433331                     23457888


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|+.+.+                                                               ...++||+|
T Consensus       121 ~~d~~~~~---------------------------------------------------------------~~~~~fD~I  137 (349)
T 3q7e_A          121 KGKVEEVE---------------------------------------------------------------LPVEKVDII  137 (349)
T ss_dssp             ESCTTTCC---------------------------------------------------------------CSSSCEEEE
T ss_pred             ECcHHHcc---------------------------------------------------------------CCCCceEEE
Confidence            87765531                                                               023689999


Q ss_pred             EEecc---ccCcccHHHHHHHHHHHcCCCCcEEEE
Q 020125          254 LLTEI---PYSVTSLKKLYLLIKKCLRPPYGVVYL  285 (330)
Q Consensus       254 LasD~---iY~~~~~~~L~~~i~~~L~~p~Gv~~l  285 (330)
                      ++.-+   +......+.+++.+.++|+ |+|+++.
T Consensus       138 is~~~~~~l~~~~~~~~~l~~~~r~Lk-pgG~li~  171 (349)
T 3q7e_A          138 ISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIFP  171 (349)
T ss_dssp             EECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred             EEccccccccCchhHHHHHHHHHHhCC-CCCEEcc
Confidence            98654   4445788889999999997 8898754

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.97  E-value=5.9e-09  Score=95.45  Aligned_cols=108  Identities=24%  Similarity=0.144  Sum_probs=77.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++.+|||+|||+|..++.++..+..+|+++|+++.+++.     ...|....                 .+..++++..
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  120 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIND-----ARVRARNM-----------------KRRFKVFFRA  120 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHH-----HHHHHHTS-----------------CCSSEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHhc-----------------CCCccEEEEE
Confidence            4788999999999998888888787799999999999854     22333210                 1223567766


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|....+                                                              ....+.||+|+
T Consensus       121 ~d~~~~~--------------------------------------------------------------~~~~~~fD~v~  138 (298)
T 1ri5_A          121 QDSYGRH--------------------------------------------------------------MDLGKEFDVIS  138 (298)
T ss_dssp             SCTTTSC--------------------------------------------------------------CCCSSCEEEEE
T ss_pred             CCccccc--------------------------------------------------------------cCCCCCcCEEE
Confidence            6644421                                                              00246899999


Q ss_pred             EeccccC----cccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          255 LTEIPYS----VTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       255 asD~iY~----~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +..++..    ......+++.+.++|+ |+|++++..
T Consensus       139 ~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  174 (298)
T 1ri5_A          139 SQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIMTV  174 (298)
T ss_dssp             EESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             ECchhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence            9999854    4556777888888886 899988774

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.96  E-value=2.9e-08  Score=87.66  Aligned_cols=130  Identities=14%  Similarity=0.052  Sum_probs=85.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .+.+|||+|||+|..++.++... ..+|+++|+++.+++.+ ..|+..|                     .+ .++++..
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a-~~~~~~~---------------------~~-~~v~~~~   97 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYA-LDKVLEV---------------------GV-PNIKLLW   97 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHH-HHHHHHH---------------------CC-SSEEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHH-HHHHHHc---------------------CC-CCEEEEe
Confidence            47899999999999999888763 35899999999998652 3333322                     12 3678888


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|+.+.+..                                                             ...+.||+|+
T Consensus        98 ~d~~~~~~~-------------------------------------------------------------~~~~~~D~i~  116 (214)
T 1yzh_A           98 VDGSDLTDY-------------------------------------------------------------FEDGEIDRLY  116 (214)
T ss_dssp             CCSSCGGGT-------------------------------------------------------------SCTTCCSEEE
T ss_pred             CCHHHHHhh-------------------------------------------------------------cCCCCCCEEE
Confidence            886552210                                                             0234688888


Q ss_pred             EeccccCcc--------cHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEE
Q 020125          255 LTEIPYSVT--------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       255 asD~iY~~~--------~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~  315 (330)
                      +.-..-.+.        .++.+++.+.++|+ |+|++++.+-...     -....++.+++.|+...++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~-----~~~~~~~~~~~~g~~~~~~  179 (214)
T 1yzh_A          117 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKTDNRG-----LFEYSLVSFSQYGMKLNGV  179 (214)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEESCHH-----HHHHHHHHHHHHTCEEEEE
T ss_pred             EECCCCccccchhhhccCCHHHHHHHHHHcC-CCcEEEEEeCCHH-----HHHHHHHHHHHCCCeeeec
Confidence            762211000        24678888888896 8999999864321     1355567778888543333

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.96  E-value=9.2e-09  Score=90.81  Aligned_cols=50  Identities=24%  Similarity=0.200  Sum_probs=40.5

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .|.+++...     ..-++.+|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus        10 ~l~~~~~~l-----~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~   59 (203)
T 1pjz_A           10 DLQQYWSSL-----NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVER   59 (203)
T ss_dssp             HHHHHHHHH-----CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHH
T ss_pred             HHHHHHHhc-----ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            455666532     123688999999999999999988887 89999999999865

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.94  E-value=1.7e-08  Score=88.09  Aligned_cols=126  Identities=18%  Similarity=0.150  Sum_probs=89.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      -++.+|||+|||+|..+..++..|+ +|++.|+++.+++.+..         .                 . ..++++..
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~---------~-----------------~-~~~~~~~~   96 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR---------H-----------------G-LDNVEFRQ   96 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG---------G-----------------C-CTTEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh---------c-----------------C-CCCeEEEe
Confidence            3567999999999999999888876 89999999998854211         0                 0 12466666


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+.                                                                ...++||+|+
T Consensus        97 ~d~~~~----------------------------------------------------------------~~~~~~D~v~  112 (218)
T 3ou2_A           97 QDLFDW----------------------------------------------------------------TPDRQWDAVF  112 (218)
T ss_dssp             CCTTSC----------------------------------------------------------------CCSSCEEEEE
T ss_pred             cccccC----------------------------------------------------------------CCCCceeEEE
Confidence            654321                                                                1246899999


Q ss_pred             EeccccCccc--HHHHHHHHHHHcCCCCcEEEEEeccc--------c-----------ccc---------cccHHHHHHh
Q 020125          255 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN--------Y-----------VGF---------NNAARHLRSL  304 (330)
Q Consensus       255 asD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA~k~~--------y-----------fGv---------~gg~~~F~~~  304 (330)
                      ++.+++....  ...+++.+.++|+ |+|++++..-..        +           ++.         --...++.++
T Consensus       113 ~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (218)
T 3ou2_A          113 FAHWLAHVPDDRFEAFWESVRSAVA-PGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTER  191 (218)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHH
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcC-CCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHH
Confidence            9999988766  4778888888896 889988773211        0           000         0156789999


Q ss_pred             hhhcCceeEE
Q 020125          305 VDEEGIFGAH  314 (330)
Q Consensus       305 vee~G~f~~~  314 (330)
                      +++.|+ .+.
T Consensus       192 l~~aGf-~v~  200 (218)
T 3ou2_A          192 LTALGW-SCS  200 (218)
T ss_dssp             HHHTTE-EEE
T ss_pred             HHHCCC-EEE
Confidence            999995 543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.93  E-value=1.3e-08  Score=94.45  Aligned_cols=122  Identities=18%  Similarity=0.177  Sum_probs=85.5

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  156 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~  156 (330)
                      .+.+.|....     .-++++|||+|||+|..++.++.  .+..+|+++|+++.+++.+     +.|.....        
T Consensus        24 ~~~~~l~~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a-----~~~~~~~~--------   85 (299)
T 3g5t_A           24 DFYKMIDEYH-----DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTA-----EVIKEGSP--------   85 (299)
T ss_dssp             HHHHHHHHHC-----CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHH-----HHHHHHCC--------
T ss_pred             HHHHHHHHHh-----cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHH-----HHHHHhcc--------
Confidence            3455555432     23688999999999999999885  3566999999999998552     33332110        


Q ss_pred             CCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 020125          157 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA  236 (330)
Q Consensus       157 s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~  236 (330)
                              ....+++|..+|..+.+. .                        +                           
T Consensus        86 --------~~~~~v~~~~~d~~~~~~-~------------------------~---------------------------  105 (299)
T 3g5t_A           86 --------DTYKNVSFKISSSDDFKF-L------------------------G---------------------------  105 (299)
T ss_dssp             ---------CCTTEEEEECCTTCCGG-G------------------------C---------------------------
T ss_pred             --------CCCCceEEEEcCHHhCCc-c------------------------c---------------------------
Confidence                    013468888888765320 0                        0                           


Q ss_pred             hhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEE
Q 020125          237 WERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL  285 (330)
Q Consensus       237 w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~l  285 (330)
                           ......++||+|+++.+++.. ....+++.+.++|+ |+|++++
T Consensus       106 -----~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~Lk-pgG~l~i  147 (299)
T 3g5t_A          106 -----ADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLR-KDGTIAI  147 (299)
T ss_dssp             -----TTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEE-EEEEEEE
T ss_pred             -----cccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcC-CCcEEEE
Confidence                 000123689999999999999 88999999999997 8898877

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.93  E-value=2.3e-08  Score=88.67  Aligned_cols=39  Identities=28%  Similarity=0.267  Sum_probs=34.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .++++|||+|||+|..++.++..|. +|+++|+++.+++.
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~   74 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSE   74 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHH
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHH
Confidence            3788999999999999999988876 89999999999855

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.92  E-value=3.6e-08  Score=85.38  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=34.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~  134 (330)
                      -++++|||+|||+|..++.++..  +..+|+++|+++.+++.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~   62 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIAN   62 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            46889999999999999988765  34599999999999865

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.92  E-value=6.8e-09  Score=99.56  Aligned_cols=39  Identities=31%  Similarity=0.561  Sum_probs=35.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  133 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~  133 (330)
                      ..++++|||+|||+|..++.+++.|+.+|+++|.++ +++
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~   86 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQ   86 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHH
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHH
Confidence            468999999999999999999999988999999996 654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.91  E-value=2.8e-08  Score=84.04  Aligned_cols=122  Identities=15%  Similarity=0.047  Sum_probs=81.8

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      ..++.+|||+|||+|..++.++.. +..+|+++|+++.+++.+     +.|+..+                 .+..++ +
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a-----~~~~~~~-----------------~~~~~~-~   79 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERI-----LSNAINL-----------------GVSDRI-A   79 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHH-----HHHHHTT-----------------TCTTSE-E
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHH-----HHHHHHh-----------------CCCCCE-E
Confidence            346789999999999999988765 356999999999998652     3333211                 112244 4


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      +.+|..+.                                                        +      ....++||+
T Consensus        80 ~~~d~~~~--------------------------------------------------------~------~~~~~~~D~   97 (178)
T 3hm2_A           80 VQQGAPRA--------------------------------------------------------F------DDVPDNPDV   97 (178)
T ss_dssp             EECCTTGG--------------------------------------------------------G------GGCCSCCSE
T ss_pred             EecchHhh--------------------------------------------------------h------hccCCCCCE
Confidence            44443210                                                        0      001268999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCc
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  310 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~  310 (330)
                      |+....++.    ..+++.+.+.|+ |+|++++..-..     .....+...+++.|.
T Consensus        98 i~~~~~~~~----~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~~~~~~~  145 (178)
T 3hm2_A           98 IFIGGGLTA----PGVFAAAWKRLP-VGGRLVANAVTV-----ESEQMLWALRKQFGG  145 (178)
T ss_dssp             EEECC-TTC----TTHHHHHHHTCC-TTCEEEEEECSH-----HHHHHHHHHHHHHCC
T ss_pred             EEECCcccH----HHHHHHHHHhcC-CCCEEEEEeecc-----ccHHHHHHHHHHcCC
Confidence            999998887    566666777886 889988876432     356778888888773

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.91  E-value=7.2e-09  Score=93.44  Aligned_cols=124  Identities=14%  Similarity=0.114  Sum_probs=83.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      ++++|||+|||+|.+++.++.. ...+|++.|+++.+++.+ ..|+..|.                     + .++++..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a-~~~~~~~~---------------------~-~~v~~~~  126 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFL-EKLSEALQ---------------------L-ENTTFCH  126 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHH-HHHHHHHT---------------------C-SSEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHH-HHHHHHcC---------------------C-CCEEEEe
Confidence            6789999999999999988752 345899999999998652 34443321                     2 2477777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+...                                                            .....++||+|+
T Consensus       127 ~d~~~~~~------------------------------------------------------------~~~~~~~fD~V~  146 (240)
T 1xdz_A          127 DRAETFGQ------------------------------------------------------------RKDVRESYDIVT  146 (240)
T ss_dssp             SCHHHHTT------------------------------------------------------------CTTTTTCEEEEE
T ss_pred             ccHHHhcc------------------------------------------------------------cccccCCccEEE
Confidence            66433110                                                            000135899999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCc
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  310 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~  310 (330)
                      +..+    ..+..+++.+.++|+ |+|++++.....+   ......+.+.+++.|+
T Consensus       147 ~~~~----~~~~~~l~~~~~~Lk-pgG~l~~~~g~~~---~~~~~~~~~~l~~~g~  194 (240)
T 1xdz_A          147 ARAV----ARLSVLSELCLPLVK-KNGLFVALKAASA---EEELNAGKKAITTLGG  194 (240)
T ss_dssp             EECC----SCHHHHHHHHGGGEE-EEEEEEEEECC-C---HHHHHHHHHHHHHTTE
T ss_pred             Eecc----CCHHHHHHHHHHhcC-CCCEEEEEeCCCc---hHHHHHHHHHHHHcCC
Confidence            8763    557888888888896 8899887532221   2245667788888885

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.91  E-value=3.4e-09  Score=89.01  Aligned_cols=38  Identities=26%  Similarity=0.335  Sum_probs=34.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ++++|||+|||+|..++.++..++. |+++|+++.+++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~   78 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRL   78 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHH
Confidence            6889999999999999999998875 9999999999855

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.91  E-value=1e-08  Score=91.15  Aligned_cols=135  Identities=15%  Similarity=0.125  Sum_probs=86.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .++++|||+|||+|..++.++..  ...+|+++|+++.+++. .+.|+..+.                     +..++++
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~---------------------~~~~v~~  114 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAI-TQQMLNFAG---------------------LQDKVTI  114 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHH-HHHHHHHHT---------------------CGGGEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHH-HHHHHHHcC---------------------CCCceEE
Confidence            36789999999999999998873  23589999999999865 234444331                     2235788


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+.   ++.                                            +          ......++||+
T Consensus       115 ~~~d~~~~---l~~--------------------------------------------~----------~~~~~~~~fD~  137 (221)
T 3u81_A          115 LNGASQDL---IPQ--------------------------------------------L----------KKKYDVDTLDM  137 (221)
T ss_dssp             EESCHHHH---GGG--------------------------------------------T----------TTTSCCCCCSE
T ss_pred             EECCHHHH---HHH--------------------------------------------H----------HHhcCCCceEE
Confidence            77775331   000                                            0          00012368999


Q ss_pred             EEEeccccCcccHHHHHHHHH--HHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEEEe
Q 020125          253 ILLTEIPYSVTSLKKLYLLIK--KCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK  317 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~--~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~~~  317 (330)
                      |+..-..   ..+....+.+.  ++|+ |+|++++..-.     ..+...|.+++++...|....+.
T Consensus       138 V~~d~~~---~~~~~~~~~~~~~~~Lk-pgG~lv~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~  195 (221)
T 3u81_A          138 VFLDHWK---DRYLPDTLLLEKCGLLR-KGTVLLADNVI-----VPGTPDFLAYVRGSSSFECTHYS  195 (221)
T ss_dssp             EEECSCG---GGHHHHHHHHHHTTCCC-TTCEEEESCCC-----CCCCHHHHHHHHHCTTEEEEEEE
T ss_pred             EEEcCCc---ccchHHHHHHHhccccC-CCeEEEEeCCC-----CcchHHHHHHHhhCCCceEEEcc
Confidence            9875322   33444333433  5675 88988765432     13578999999998777777654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.90  E-value=1.3e-08  Score=91.37  Aligned_cols=103  Identities=16%  Similarity=0.152  Sum_probs=78.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      -++.+|||+|||+|..++.++..++ +|+++|+++.+++.+     ..|..                   ...+++++..
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~~-------------------~~~~~~~~~~   92 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVF-----RQKIA-------------------GVDRKVQVVQ   92 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHH-----HHHTT-------------------TSCTTEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHH-----HHHhh-------------------ccCCceEEEE
Confidence            4678999999999999999888765 899999999988542     22210                   0123577777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|+...+                                                               ...+.||+|+
T Consensus        93 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~  109 (263)
T 2yqz_A           93 ADARAIP---------------------------------------------------------------LPDESVHGVI  109 (263)
T ss_dssp             SCTTSCC---------------------------------------------------------------SCTTCEEEEE
T ss_pred             cccccCC---------------------------------------------------------------CCCCCeeEEE
Confidence            7654321                                                               1236899999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      +..+++.......+++-+.++|+ |+|++++.
T Consensus       110 ~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~  140 (263)
T 2yqz_A          110 VVHLWHLVPDWPKVLAEAIRVLK-PGGALLEG  140 (263)
T ss_dssp             EESCGGGCTTHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             ECCchhhcCCHHHHHHHHHHHCC-CCcEEEEE
Confidence            99999988888889999999997 88988876

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.90  E-value=4.4e-08  Score=90.60  Aligned_cols=106  Identities=18%  Similarity=0.198  Sum_probs=74.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC---CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG---AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g---a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      -+|.+|||||||+|...+.+++..   ..+|++.|+++.+|+.+     +.|+...                 ....+|+
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A-----~~~~~~~-----------------~~~~~v~  126 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC-----RRHIDAY-----------------KAPTPVD  126 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHH-----HHHHHTS-----------------CCSSCEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHH-----HHHHHhh-----------------ccCceEE
Confidence            368899999999999998887642   12899999999999652     2333210                 1223577


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      |..+|-.+.                                                                 ..+.||
T Consensus       127 ~~~~D~~~~-----------------------------------------------------------------~~~~~d  141 (261)
T 4gek_A          127 VIEGDIRDI-----------------------------------------------------------------AIENAS  141 (261)
T ss_dssp             EEESCTTTC-----------------------------------------------------------------CCCSEE
T ss_pred             Eeecccccc-----------------------------------------------------------------cccccc
Confidence            766663221                                                                 124699


Q ss_pred             EEEEeccccCcc--cHHHHHHHHHHHcCCCCcEEEEEec
Q 020125          252 VILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATK  288 (330)
Q Consensus       252 vILasD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~k  288 (330)
                      +|++.-++....  ....+++-|.+.|+ |+|+++++.+
T Consensus       142 ~v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pGG~lii~e~  179 (261)
T 4gek_A          142 MVVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSEK  179 (261)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             cceeeeeeeecCchhHhHHHHHHHHHcC-CCcEEEEEec
Confidence            999999987543  34567888888997 8999988743

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.89  E-value=5.9e-09  Score=101.65  Aligned_cols=48  Identities=25%  Similarity=0.198  Sum_probs=41.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .+|++|||+|||+|..++.++..|+++|++.|+++.+++. ...|+..|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~-A~~N~~~n  258 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRAL-SLAHFEAN  258 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHH-HHHHHHHT
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            4789999999999999999999888899999999999966 34555544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.89  E-value=1.6e-08  Score=92.94  Aligned_cols=142  Identities=13%  Similarity=0.173  Sum_probs=90.8

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccC
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ  154 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~  154 (330)
                      -++.|+.++.        ..++++|||+|||+|..++.++... ..+|++.|+++.+++.+ ..|+..+.. +       
T Consensus        24 D~~lL~~~~~--------~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a-~~n~~~~~~-~-------   86 (260)
T 2ozv_A           24 DAMLLASLVA--------DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFA-RRSLELPDN-A-------   86 (260)
T ss_dssp             HHHHHHHTCC--------CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHH-HHHTTSGGG-T-------
T ss_pred             HHHHHHHHhc--------ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHH-HHHHHhhhh-C-------
Confidence            4556666553        2357899999999999999988764 45999999999998653 344433000 0       


Q ss_pred             CCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 020125          155 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS  234 (330)
Q Consensus       155 ~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~  234 (330)
                                .+..+++++.+|+.+...  .                                                 
T Consensus        87 ----------~l~~~v~~~~~D~~~~~~--~-------------------------------------------------  105 (260)
T 2ozv_A           87 ----------AFSARIEVLEADVTLRAK--A-------------------------------------------------  105 (260)
T ss_dssp             ----------TTGGGEEEEECCTTCCHH--H-------------------------------------------------
T ss_pred             ----------CCcceEEEEeCCHHHHhh--h-------------------------------------------------
Confidence                      122357787887655310  0                                                 


Q ss_pred             hhhhhhcccccCCCCccEEEEeccccCc-------------------ccHHHHHHHHHHHcCCCCcEEEEEecccccccc
Q 020125          235 RAWERASEADQGEGGYDVILLTEIPYSV-------------------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFN  295 (330)
Q Consensus       235 ~~w~~~~~~~~~~~~fDvILasD~iY~~-------------------~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~  295 (330)
                        +.   ......++||+|++. -.|..                   ..++.+++.+.++|+ |+|++++.....     
T Consensus       106 --~~---~~~~~~~~fD~Vv~n-PPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~-----  173 (260)
T 2ozv_A          106 --RV---EAGLPDEHFHHVIMN-PPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV-SGGQLSLISRPQ-----  173 (260)
T ss_dssp             --HH---HTTCCTTCEEEEEEC-CCC---------------------CCHHHHHHHHHHHEE-EEEEEEEEECGG-----
T ss_pred             --hh---hhccCCCCcCEEEEC-CCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC-CCCEEEEEEcHH-----
Confidence              00   000123578888875 33332                   236788888888997 899999876543     


Q ss_pred             ccHHHHHHhhhhc
Q 020125          296 NAARHLRSLVDEE  308 (330)
Q Consensus       296 gg~~~F~~~vee~  308 (330)
                       ...++++.+++.
T Consensus       174 -~~~~~~~~l~~~  185 (260)
T 2ozv_A          174 -SVAEIIAACGSR  185 (260)
T ss_dssp             -GHHHHHHHHTTT
T ss_pred             -HHHHHHHHHHhc
Confidence             356788888774

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.89  E-value=8.3e-09  Score=89.76  Aligned_cols=104  Identities=17%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             CCCCEEEEEcccCCHHHH-HHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCGYGLPGI-FACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi-~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      -++.+|||+|||+|...+ .++..|. +|+++|+++.+++.+     +.|....                   ..++++.
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a-----~~~~~~~-------------------~~~~~~~   76 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKA-----ENFSREN-------------------NFKLNIS   76 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHH-----HHHHHHH-------------------TCCCCEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHH-----HHHHHhc-------------------CCceEEE
Confidence            357899999999998744 4445555 899999999998652     2232211                   0134454


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|....+                                                               ...+.||+|
T Consensus        77 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v   93 (209)
T 2p8j_A           77 KGDIRKLP---------------------------------------------------------------FKDESMSFV   93 (209)
T ss_dssp             ECCTTSCC---------------------------------------------------------------SCTTCEEEE
T ss_pred             ECchhhCC---------------------------------------------------------------CCCCceeEE
Confidence            55533311                                                               123689999


Q ss_pred             EEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          254 LLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       254 LasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      ++..+++..  .....+++.+.+.|+ |+|++++..
T Consensus        94 ~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  128 (209)
T 2p8j_A           94 YSYGTIFHMRKNDVKEAIDEIKRVLK-PGGLACINF  128 (209)
T ss_dssp             EECSCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EEcChHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEE
Confidence            999998876  567778888888896 889988764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.89  E-value=1.5e-08  Score=94.51  Aligned_cols=106  Identities=17%  Similarity=0.128  Sum_probs=74.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHH--HcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFAC--LKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~--~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      -++.+|||+|||+|..++.++  .....+|+++|+++.+++.     .+.|....                 .+..+++|
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~  174 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDG-----ATRLAAGH-----------------ALAGQITL  174 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHH-----HHHHHTTS-----------------TTGGGEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHH-----HHHHHHhc-----------------CCCCceEE
Confidence            468899999999999988874  3444599999999999854     33343210                 12235777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+.+                                                                ..++||+
T Consensus       175 ~~~d~~~~~----------------------------------------------------------------~~~~fD~  190 (305)
T 3ocj_A          175 HRQDAWKLD----------------------------------------------------------------TREGYDL  190 (305)
T ss_dssp             EECCGGGCC----------------------------------------------------------------CCSCEEE
T ss_pred             EECchhcCC----------------------------------------------------------------ccCCeEE
Confidence            776643311                                                                1268999


Q ss_pred             EEEeccccCcccHH---HHHHHHHHHcCCCCcEEEEEe
Q 020125          253 ILLTEIPYSVTSLK---KLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       253 ILasD~iY~~~~~~---~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      |++..+++......   .+++.+.++|+ |+|++++..
T Consensus       191 v~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~  227 (305)
T 3ocj_A          191 LTSNGLNIYEPDDARVTELYRRFWQALK-PGGALVTSF  227 (305)
T ss_dssp             EECCSSGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred             EEECChhhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEe
Confidence            99999887554433   47888888896 899999875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.88  E-value=2.2e-08  Score=89.67  Aligned_cols=127  Identities=14%  Similarity=0.166  Sum_probs=88.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      -++++|||+|||+|..+..++..|+ +|+++|+++.+++.+     ..                          ++++..
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~--------------------------~~~~~~   87 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFC-----EG--------------------------KFNVVK   87 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHH-----HT--------------------------TSEEEC
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHH-----Hh--------------------------hcceee
Confidence            3678999999999999999888877 799999999987431     10                          123333


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+.                                                        +     .....++||+|+
T Consensus        88 ~d~~~~--------------------------------------------------------~-----~~~~~~~fD~i~  106 (240)
T 3dli_A           88 SDAIEY--------------------------------------------------------L-----KSLPDKYLDGVM  106 (240)
T ss_dssp             SCHHHH--------------------------------------------------------H-----HTSCTTCBSEEE
T ss_pred             ccHHHH--------------------------------------------------------h-----hhcCCCCeeEEE
Confidence            331110                                                        0     001347899999


Q ss_pred             EeccccCcc--cHHHHHHHHHHHcCCCCcEEEEEeccc---------ccc----ccccHHHHHHhhhhcCceeEEE
Q 020125          255 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKN---------YVG----FNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       255 asD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~k~~---------yfG----v~gg~~~F~~~vee~G~f~~~~  315 (330)
                      +..+++...  .+..+++.+.++|+ |+|++++.....         |..    ..-...++.+++++.|+-.+++
T Consensus       107 ~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~  181 (240)
T 3dli_A          107 ISHFVEHLDPERLFELLSLCYSKMK-YSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI  181 (240)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHBC-TTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred             ECCchhhCCcHHHHHHHHHHHHHcC-CCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence            999998887  67899999999997 899988875321         100    0114578889999999744443

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.88  E-value=6.9e-09  Score=95.44  Aligned_cols=112  Identities=19%  Similarity=0.294  Sum_probs=77.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++++|||+|||+|..++.++..|+ +|+++|+++.+++.+     ..|.......              ....++.+..
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a-----~~~~~~~~~~--------------~~~~~~~~~~  115 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYA-----LKERWNRRKE--------------PAFDKWVIEE  115 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHHHHTTTS--------------HHHHTCEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHH-----HHhhhhcccc--------------cccceeeEee
Confidence            3678999999999999999998887 999999999998653     2232211000              0001344444


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|+...+.                                                     .|       ...++||+|+
T Consensus       116 ~d~~~~~~-----------------------------------------------------~~-------~~~~~fD~V~  135 (293)
T 3thr_A          116 ANWLTLDK-----------------------------------------------------DV-------PAGDGFDAVI  135 (293)
T ss_dssp             CCGGGHHH-----------------------------------------------------HS-------CCTTCEEEEE
T ss_pred             cChhhCcc-----------------------------------------------------cc-------ccCCCeEEEE
Confidence            44433110                                                     00       1346899999


Q ss_pred             Ee-ccccCccc-------HHHHHHHHHHHcCCCCcEEEEEe
Q 020125          255 LT-EIPYSVTS-------LKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       255 as-D~iY~~~~-------~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +. .++.....       ...+++-+.++|+ |+|++++..
T Consensus       136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  175 (293)
T 3thr_A          136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVIDH  175 (293)
T ss_dssp             ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             EcChHHhhcCccccCHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence            98 88877776       8889999999997 899988764

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.87  E-value=2.9e-08  Score=89.59  Aligned_cols=126  Identities=19%  Similarity=0.179  Sum_probs=85.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      ..++++|||+|||+|..++.++.. + ..+|++.|+++++++.+ ..|+..+.                     +..+++
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a-~~~~~~~~---------------------~~~~v~  148 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLA-WENIKWAG---------------------FDDRVT  148 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHH-HHHHHHHT---------------------CTTTEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHH-HHHHHHcC---------------------CCCceE
Confidence            457889999999999999998876 4 56999999999998652 34443331                     223466


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      +..+|+.+.                                                                ....+||
T Consensus       149 ~~~~d~~~~----------------------------------------------------------------~~~~~~D  164 (255)
T 3mb5_A          149 IKLKDIYEG----------------------------------------------------------------IEEENVD  164 (255)
T ss_dssp             EECSCGGGC----------------------------------------------------------------CCCCSEE
T ss_pred             EEECchhhc----------------------------------------------------------------cCCCCcC
Confidence            666654321                                                                1235699


Q ss_pred             EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcC--ceeEEEE
Q 020125          252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEG--IFGAHLI  316 (330)
Q Consensus       252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G--~f~~~~~  316 (330)
                      +|+. |    ......+++.+.++|+ |+|++++.....     ....++.+.+++.|  +-..+++
T Consensus       165 ~v~~-~----~~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~l~~~g~~f~~~~~~  220 (255)
T 3mb5_A          165 HVIL-D----LPQPERVVEHAAKALK-PGGFFVAYTPCS-----NQVMRLHEKLREFKDYFMKPRTI  220 (255)
T ss_dssp             EEEE-C----SSCGGGGHHHHHHHEE-EEEEEEEEESSH-----HHHHHHHHHHHHTGGGBSCCEEE
T ss_pred             EEEE-C----CCCHHHHHHHHHHHcC-CCCEEEEEECCH-----HHHHHHHHHHHHcCCCccccEEE
Confidence            9997 3    3333456666777886 889988765432     24677888899988  5444443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.87  E-value=2.2e-08  Score=86.87  Aligned_cols=123  Identities=18%  Similarity=0.186  Sum_probs=83.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      ++ +|||+|||+|..++.++..|. +|+++|+++.+++.+     +.|....                   ..++.+..+
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~~~~-------------------~~~~~~~~~   83 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKA-----KQLAQEK-------------------GVKITTVQS   83 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHH-----HHHHHHH-------------------TCCEEEECC
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHH-----HHHHHhc-------------------CCceEEEEc
Confidence            45 999999999999999988876 899999999998542     2332211                   013555555


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |....+                                                               ...+.||+|++
T Consensus        84 d~~~~~---------------------------------------------------------------~~~~~fD~v~~  100 (202)
T 2kw5_A           84 NLADFD---------------------------------------------------------------IVADAWEGIVS  100 (202)
T ss_dssp             BTTTBS---------------------------------------------------------------CCTTTCSEEEE
T ss_pred             ChhhcC---------------------------------------------------------------CCcCCccEEEE
Confidence            533210                                                               12368999999


Q ss_pred             eccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc----c-ccc------cccHHHHHHhhhhcCc
Q 020125          256 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----Y-VGF------NNAARHLRSLVDEEGI  310 (330)
Q Consensus       256 sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~----y-fGv------~gg~~~F~~~vee~G~  310 (330)
                      +-+.+.......+++.+.++|+ |+|++++.....    | .|.      .-+..++.++++  |+
T Consensus       101 ~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf  163 (202)
T 2kw5_A          101 IFCHLPSSLRQQLYPKVYQGLK-PGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SL  163 (202)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTCC-SSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SS
T ss_pred             EhhcCCHHHHHHHHHHHHHhcC-CCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--Cc
Confidence            8666655667788888888886 899988874211    0 110      125678888888  74

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.87  E-value=1.8e-08  Score=93.13  Aligned_cols=107  Identities=19%  Similarity=0.178  Sum_probs=78.5

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCC
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS  158 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~  158 (330)
                      .|.++|.+..      -.+.+|||+|||+|..+..++..+. +|+++|+++.+++.+.                      
T Consensus        28 ~l~~~l~~~~------~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~----------------------   78 (257)
T 4hg2_A           28 ALFRWLGEVA------PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQAL----------------------   78 (257)
T ss_dssp             HHHHHHHHHS------SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCC----------------------
T ss_pred             HHHHHHHHhc------CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhh----------------------
Confidence            4667777653      1356999999999999999988875 8999999999874310                      


Q ss_pred             CCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 020125          159 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE  238 (330)
Q Consensus       159 ~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~  238 (330)
                             -.+++++..++.++.+                                                         
T Consensus        79 -------~~~~v~~~~~~~e~~~---------------------------------------------------------   94 (257)
T 4hg2_A           79 -------RHPRVTYAVAPAEDTG---------------------------------------------------------   94 (257)
T ss_dssp             -------CCTTEEEEECCTTCCC---------------------------------------------------------
T ss_pred             -------hcCCceeehhhhhhhc---------------------------------------------------------
Confidence                   0135666666543321                                                         


Q ss_pred             hhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          239 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       239 ~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                            ...+.||+|+++.++...+ .+.+++-+.+.|+ |+|++.+.
T Consensus        95 ------~~~~sfD~v~~~~~~h~~~-~~~~~~e~~rvLk-pgG~l~~~  134 (257)
T 4hg2_A           95 ------LPPASVDVAIAAQAMHWFD-LDRFWAELRRVAR-PGAVFAAV  134 (257)
T ss_dssp             ------CCSSCEEEEEECSCCTTCC-HHHHHHHHHHHEE-EEEEEEEE
T ss_pred             ------ccCCcccEEEEeeehhHhh-HHHHHHHHHHHcC-CCCEEEEE
Confidence                  1346899999999997665 6778888899997 88876554

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.86  E-value=4.8e-08  Score=87.37  Aligned_cols=130  Identities=17%  Similarity=0.116  Sum_probs=82.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      .-.+.+|||+|||+|..++.++.. | ..+|++.|+++.+++.     +..|...+                    .++.
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~-----~~~~a~~~--------------------~~v~  129 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD-----LINLAKKR--------------------TNII  129 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHH-----HHHHHHHC--------------------TTEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHH-----HHHHhhcc--------------------CCeE
Confidence            346889999999999999988765 3 4699999999998754     22332210                    2466


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      +..+|..+...+                                                            ....++||
T Consensus       130 ~~~~d~~~~~~~------------------------------------------------------------~~~~~~~D  149 (233)
T 2ipx_A          130 PVIEDARHPHKY------------------------------------------------------------RMLIAMVD  149 (233)
T ss_dssp             EECSCTTCGGGG------------------------------------------------------------GGGCCCEE
T ss_pred             EEEcccCChhhh------------------------------------------------------------cccCCcEE
Confidence            666664431100                                                            00135899


Q ss_pred             EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHH-H---HHhhhhcCce
Q 020125          252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARH-L---RSLVDEEGIF  311 (330)
Q Consensus       252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~-F---~~~vee~G~f  311 (330)
                      +|++ |.. .++....++.-+.+.|+ |+|++++..+............ |   ++.+++.|+-
T Consensus       150 ~V~~-~~~-~~~~~~~~~~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  210 (233)
T 2ipx_A          150 VIFA-DVA-QPDQTRIVALNAHTFLR-NGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMK  210 (233)
T ss_dssp             EEEE-CCC-CTTHHHHHHHHHHHHEE-EEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEE
T ss_pred             EEEE-cCC-CccHHHHHHHHHHHHcC-CCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCc
Confidence            9997 555 45555666776777896 8999999765421111111111 2   6778888853

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.86  E-value=1.3e-08  Score=93.33  Aligned_cols=129  Identities=16%  Similarity=0.108  Sum_probs=86.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      -.+.+|||+|||+|.+++.++.. ...+|++.|.++.+++. ...|+..|.                     +. +|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~-a~~~~~~~~---------------------l~-~v~~~  135 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAF-VERAIEVLG---------------------LK-GARAL  135 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHH-HHHHHHHHT---------------------CS-SEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------CC-ceEEE
Confidence            36789999999999999998865 45699999999999865 234444331                     22 47777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+...                                                            .....++||+|
T Consensus       136 ~~d~~~~~~------------------------------------------------------------~~~~~~~fD~I  155 (249)
T 3g89_A          136 WGRAEVLAR------------------------------------------------------------EAGHREAYARA  155 (249)
T ss_dssp             ECCHHHHTT------------------------------------------------------------STTTTTCEEEE
T ss_pred             ECcHHHhhc------------------------------------------------------------ccccCCCceEE
Confidence            776543210                                                            00123689999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~  314 (330)
                      ++.-+    ..++.+++.+.++|+ |+|++++.....+   ..-..++...+++.|+...+
T Consensus       156 ~s~a~----~~~~~ll~~~~~~Lk-pgG~l~~~~g~~~---~~e~~~~~~~l~~~G~~~~~  208 (249)
T 3g89_A          156 VARAV----APLCVLSELLLPFLE-VGGAAVAMKGPRV---EEELAPLPPALERLGGRLGE  208 (249)
T ss_dssp             EEESS----CCHHHHHHHHGGGEE-EEEEEEEEECSCC---HHHHTTHHHHHHHHTEEEEE
T ss_pred             EECCc----CCHHHHHHHHHHHcC-CCeEEEEEeCCCc---HHHHHHHHHHHHHcCCeEEE
Confidence            98643    456888888888886 8898775432211   23456677778888864433

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.86  E-value=3.7e-08  Score=90.59  Aligned_cols=128  Identities=16%  Similarity=0.126  Sum_probs=84.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      ..++.+|||+|||+|..++.++.. + ..+|++.|+++.+++.+ ..|+..+                     .+..++.
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a-~~~~~~~---------------------~~~~~v~  167 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLA-ESNLTKW---------------------GLIERVT  167 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHH-HHHHHHT---------------------TCGGGEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHH-HHHHHHc---------------------CCCCCEE
Confidence            356889999999999999998876 4 46999999999998652 2333322                     0113455


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      +..+|+.+.                                                                ...++||
T Consensus       168 ~~~~d~~~~----------------------------------------------------------------~~~~~~D  183 (277)
T 1o54_A          168 IKVRDISEG----------------------------------------------------------------FDEKDVD  183 (277)
T ss_dssp             EECCCGGGC----------------------------------------------------------------CSCCSEE
T ss_pred             EEECCHHHc----------------------------------------------------------------ccCCccC
Confidence            555553221                                                                0125799


Q ss_pred             EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEEEee
Q 020125          252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKE  318 (330)
Q Consensus       252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~~~e  318 (330)
                      +|+. |.    .....+++.+.++|+ |+|++++.....     ....++.+.+++.|+...++.+.
T Consensus       184 ~V~~-~~----~~~~~~l~~~~~~L~-pgG~l~~~~~~~-----~~~~~~~~~l~~~gf~~~~~~~~  239 (277)
T 1o54_A          184 ALFL-DV----PDPWNYIDKCWEALK-GGGRFATVCPTT-----NQVQETLKKLQELPFIRIEVWES  239 (277)
T ss_dssp             EEEE-CC----SCGGGTHHHHHHHEE-EEEEEEEEESSH-----HHHHHHHHHHHHSSEEEEEEECC
T ss_pred             EEEE-CC----cCHHHHHHHHHHHcC-CCCEEEEEeCCH-----HHHHHHHHHHHHCCCceeEEEEE
Confidence            9997 33    333455666677886 889988876532     24577888888888755555443

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.86  E-value=4.4e-08  Score=89.19  Aligned_cols=135  Identities=16%  Similarity=0.164  Sum_probs=89.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .++++|||+|||+|..++.++.. + ..+|+++|+++.+++.     .+.|+..+                 .+..+|++
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~-----------------g~~~~v~~  119 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQV-----ARENLQLA-----------------GVDQRVTL  119 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHH-----HHHHHHHT-----------------TCTTTEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEE
Confidence            36889999999999999998865 2 4599999999999855     23343321                 12346777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+.   ++                                                         .....++||+
T Consensus       120 ~~~d~~~~---l~---------------------------------------------------------~~~~~~~fD~  139 (248)
T 3tfw_A          120 REGPALQS---LE---------------------------------------------------------SLGECPAFDL  139 (248)
T ss_dssp             EESCHHHH---HH---------------------------------------------------------TCCSCCCCSE
T ss_pred             EEcCHHHH---HH---------------------------------------------------------hcCCCCCeEE
Confidence            77764331   00                                                         0012358999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc----------cccHHHHHHhhhhcCceeEEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv----------~gg~~~F~~~vee~G~f~~~~~  316 (330)
                      |+. |.  ....+..+++.+.++|+ |+|++++..-- +.|.          ..+.++|.+.+.+..-|...++
T Consensus       140 V~~-d~--~~~~~~~~l~~~~~~Lk-pGG~lv~~~~~-~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  208 (248)
T 3tfw_A          140 IFI-DA--DKPNNPHYLRWALRYSR-PGTLIIGDNVV-RDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL  208 (248)
T ss_dssp             EEE-CS--CGGGHHHHHHHHHHTCC-TTCEEEEECCS-GGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEE-CC--chHHHHHHHHHHHHhcC-CCeEEEEeCCC-cCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe
Confidence            997 32  35667788888888886 88987765322 2111          1257889999988766666655

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.85  E-value=3.3e-08  Score=90.04  Aligned_cols=110  Identities=18%  Similarity=0.226  Sum_probs=81.8

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCC
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPES  157 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s  157 (330)
                      ..+++.+.+..    ...++++|||+|||+|..++.++..++ +|+++|+++.+++.+.                     
T Consensus        20 ~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~---------------------   73 (261)
T 3ege_A           20 IRIVNAIINLL----NLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAV---------------------   73 (261)
T ss_dssp             HHHHHHHHHHH----CCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSC---------------------
T ss_pred             HHHHHHHHHHh----CCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHH---------------------
Confidence            34666666554    234788999999999999999988765 8999999998874310                     


Q ss_pred             CCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhh
Q 020125          158 SLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAW  237 (330)
Q Consensus       158 ~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w  237 (330)
                            +  ..+++|..+|+...+                                                        
T Consensus        74 ------~--~~~~~~~~~d~~~~~--------------------------------------------------------   89 (261)
T 3ege_A           74 ------V--HPQVEWFTGYAENLA--------------------------------------------------------   89 (261)
T ss_dssp             ------C--CTTEEEECCCTTSCC--------------------------------------------------------
T ss_pred             ------h--ccCCEEEECchhhCC--------------------------------------------------------
Confidence                  0  115666666654321                                                        


Q ss_pred             hhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          238 ERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       238 ~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                             ...++||+|++..+++.......+++-+.++|+  +|.+++.
T Consensus        90 -------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk--gG~~~~~  129 (261)
T 3ege_A           90 -------LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR--DGTIVLL  129 (261)
T ss_dssp             -------SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC--SSCEEEE
T ss_pred             -------CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC--CcEEEEE
Confidence                   124689999999999999999999999999996  7865554

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.84  E-value=7.7e-10  Score=99.17  Aligned_cols=39  Identities=28%  Similarity=0.337  Sum_probs=35.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .++.+|||+|||+|..++.++..| .+|+++|+++.+++.
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~  115 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIAL  115 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHH
T ss_pred             cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHH
Confidence            378999999999999999999988 599999999999865

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.84  E-value=3.1e-08  Score=90.47  Aligned_cols=48  Identities=17%  Similarity=0.158  Sum_probs=40.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      -+|.+|||+|||+|.+++.+++.+ +.+|+++|+++.+++. ...|+..|
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~-A~~N~~~~   62 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQS-AVKNVEAH   62 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHH-HHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            367899999999999999999987 5689999999999965 34555555

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.84  E-value=1.9e-08  Score=96.39  Aligned_cols=46  Identities=28%  Similarity=0.285  Sum_probs=39.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ++++|||+|||+|..++.+++.|+ +|++.|+++.+++. ...|+..|
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~-a~~n~~~~  198 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGW-AKENQVLA  198 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHH-HHHHHHHH
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHH-HHHHHHHc
Confidence            578999999999999999999998 99999999999966 34565555

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.84  E-value=2.4e-08  Score=93.82  Aligned_cols=48  Identities=19%  Similarity=0.193  Sum_probs=42.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      -+|++|||+|||+|..+|.+++.|+++|++.|+|+.+++. +..|+.+|
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~-~~~N~~~N  171 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF-LVENIHLN  171 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHH-HHHHHHHT
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHH-HHHHHHHc
Confidence            3689999999999999999999998899999999999966 35666665

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.84  E-value=4.3e-08  Score=91.24  Aligned_cols=40  Identities=20%  Similarity=0.089  Sum_probs=35.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++.+|||+|||+|..++.++..|+ +|+++|+++.+++.
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~   82 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDD   82 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHH
Confidence            45788999999999999999998886 89999999999854

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.83  E-value=1.5e-08  Score=98.76  Aligned_cols=48  Identities=29%  Similarity=0.209  Sum_probs=40.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .++++|||+|||+|..++.++..|+++|++.|+++.+++. ...|+..|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~-a~~n~~~n  266 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDI-ARQNVELN  266 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            3688999999999999999999888899999999999865 34455444

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.83  E-value=2.7e-08  Score=96.85  Aligned_cols=48  Identities=27%  Similarity=0.353  Sum_probs=39.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ..+.+|||+|||+|..++.+++.+ ..+|+++|+++.+++. .+.|+..|
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~-Ar~n~~~n  269 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVAS-SRLNVETN  269 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHH-HHHHHHHH
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHH-HHHHHHHc
Confidence            356899999999999999999875 5699999999999866 35566655

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.83  E-value=6e-08  Score=84.14  Aligned_cols=50  Identities=24%  Similarity=0.294  Sum_probs=41.1

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .+.++|.+..      -++.+|||+|||+|..++.++..|..+|+++|+++.+++.
T Consensus        31 ~~~~~l~~~~------~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~   80 (215)
T 2pxx_A           31 SFRALLEPEL------RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAA   80 (215)
T ss_dssp             HHHHHHGGGC------CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHH
T ss_pred             HHHHHHHHhc------CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHH
Confidence            4666666542      4678999999999999999998887799999999998854

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.82  E-value=1.4e-07  Score=86.75  Aligned_cols=51  Identities=25%  Similarity=0.187  Sum_probs=41.4

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .|.+++....    ..-++.+|||+|||+|...+.++..|. +|++.|+++.+++.
T Consensus        55 ~l~~~~~~~~----~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~  105 (252)
T 2gb4_A           55 LLKKHLDTFL----KGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIRE  105 (252)
T ss_dssp             HHHHHHHHHH----TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred             HHHHHHHHhc----cCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence            5666665432    123678999999999999999999988 89999999999865

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.82  E-value=8.9e-08  Score=89.75  Aligned_cols=133  Identities=21%  Similarity=0.211  Sum_probs=90.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      -++.+|||+|||+|..++.++.. ...+++++|++ .+++.     .+.|....                 .+..+++|.
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~-----a~~~~~~~-----------------~~~~~v~~~  220 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEV-----AKENARIQ-----------------GVASRYHTI  220 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHH-----HHHHHHHH-----------------TCGGGEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHH-----HHHHHHhc-----------------CCCcceEEE
Confidence            35689999999999999887765 23489999999 88754     23333211                 122357777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.+                                                                ...+||+|
T Consensus       221 ~~d~~~~~----------------------------------------------------------------~~~~~D~v  236 (335)
T 2r3s_A          221 AGSAFEVD----------------------------------------------------------------YGNDYDLV  236 (335)
T ss_dssp             ESCTTTSC----------------------------------------------------------------CCSCEEEE
T ss_pred             ecccccCC----------------------------------------------------------------CCCCCcEE
Confidence            77643310                                                                11249999


Q ss_pred             EEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEecccc---------------------ccccccHHHHHHhhhhcCc
Q 020125          254 LLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNY---------------------VGFNNAARHLRSLVDEEGI  310 (330)
Q Consensus       254 LasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y---------------------fGv~gg~~~F~~~vee~G~  310 (330)
                      ++..+++.-  .....+++-+.+.|+ |+|.+++......                     .|..-+..++.+++++.|+
T Consensus       237 ~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf  315 (335)
T 2r3s_A          237 LLPNFLHHFDVATCEQLLRKIKTALA-VEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGF  315 (335)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTC
T ss_pred             EEcchhccCCHHHHHHHHHHHHHhCC-CCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCC
Confidence            999999875  455678888888896 8898887632111                     1222358899999999997


Q ss_pred             eeEEE
Q 020125          311 FGAHL  315 (330)
Q Consensus       311 f~~~~  315 (330)
                      -..++
T Consensus       316 ~~~~~  320 (335)
T 2r3s_A          316 SHSQL  320 (335)
T ss_dssp             SEEEE
T ss_pred             CeeeE
Confidence            44444

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.82  E-value=1.5e-07  Score=85.50  Aligned_cols=109  Identities=20%  Similarity=0.239  Sum_probs=77.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCChH------HHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccC
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAE------TIRCTTVPNVLANLEQARERQSRQPESSLTPSRQT  165 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~~------vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~  165 (330)
                      .-++++|||+|||+|..++.++.. |. .+|+++|+++.      +++.     .+.|+...                 .
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~-----a~~~~~~~-----------------~   98 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQ-----AWNHLLAG-----------------P   98 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHH-----HHHHHHTS-----------------T
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHH-----HHHHHHhc-----------------C
Confidence            347889999999999999988876 43 59999999987      6643     23333210                 1


Q ss_pred             CCCceeeeecc-cCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccc
Q 020125          166 LAPSVHFYAGD-WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEAD  244 (330)
Q Consensus       166 l~~~v~~~~gd-W~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~  244 (330)
                      +..++++..+| .....                                                 +            .
T Consensus        99 ~~~~v~~~~~d~~~~~~-------------------------------------------------~------------~  117 (275)
T 3bkx_A           99 LGDRLTVHFNTNLSDDL-------------------------------------------------G------------P  117 (275)
T ss_dssp             TGGGEEEECSCCTTTCC-------------------------------------------------G------------G
T ss_pred             CCCceEEEECChhhhcc-------------------------------------------------C------------C
Confidence            22357776665 21100                                                 0            0


Q ss_pred             cCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          245 QGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       245 ~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      ...++||+|++..+++.......+.+.++.++ +|+|++++.
T Consensus       118 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~-~~gG~l~~~  158 (275)
T 3bkx_A          118 IADQHFDRVVLAHSLWYFASANALALLFKNMA-AVCDHVDVA  158 (275)
T ss_dssp             GTTCCCSEEEEESCGGGSSCHHHHHHHHHHHT-TTCSEEEEE
T ss_pred             CCCCCEEEEEEccchhhCCCHHHHHHHHHHHh-CCCCEEEEE
Confidence            12468999999999999888888888888766 489998886

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.82  E-value=1.6e-08  Score=90.17  Aligned_cols=116  Identities=19%  Similarity=0.170  Sum_probs=80.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      -++++|||+|||+|..++.++..|+ +|+++|+++.+++.+     +.|                       .++++|..
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~-----------------------~~~~~~~~   97 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLA-----RAN-----------------------APHADVYE   97 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHH-----HHH-----------------------CTTSEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHH-----HHh-----------------------CCCceEEE
Confidence            3688999999999999999998876 899999999988542     222                       02466777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccC-CCCccEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQG-EGGYDVI  253 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~-~~~fDvI  253 (330)
                      +|+.+.-                                                  +            .. .++||+|
T Consensus        98 ~d~~~~~--------------------------------------------------~------------~~~~~~fD~v  115 (226)
T 3m33_A           98 WNGKGEL--------------------------------------------------P------------AGLGAPFGLI  115 (226)
T ss_dssp             CCSCSSC--------------------------------------------------C------------TTCCCCEEEE
T ss_pred             cchhhcc--------------------------------------------------C------------CcCCCCEEEE
Confidence            7764310                                                  0            01 4689999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~  314 (330)
                      ++.+      ....+++-+.++|+ |+|+++..      +-......+.+.+++.|+-..+
T Consensus       116 ~~~~------~~~~~l~~~~~~Lk-pgG~l~~~------~~~~~~~~~~~~l~~~Gf~~~~  163 (226)
T 3m33_A          116 VSRR------GPTSVILRLPELAA-PDAHFLYV------GPRLNVPEVPERLAAVGWDIVA  163 (226)
T ss_dssp             EEES------CCSGGGGGHHHHEE-EEEEEEEE------ESSSCCTHHHHHHHHTTCEEEE
T ss_pred             EeCC------CHHHHHHHHHHHcC-CCcEEEEe------CCcCCHHHHHHHHHHCCCeEEE
Confidence            9982      34455566677886 88988811      1123567888999999864443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.82  E-value=5.1e-08  Score=85.06  Aligned_cols=41  Identities=29%  Similarity=0.374  Sum_probs=37.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++++|||+|||+|..++.++..|+.+|++.|+++.+++.
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~   87 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV   87 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence            45789999999999999999998888899999999999854

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.82  E-value=4.8e-08  Score=85.11  Aligned_cols=40  Identities=25%  Similarity=0.497  Sum_probs=34.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      +++++|||+|||+|..++.++.. +..+|+++|+++.+++.
T Consensus        64 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~  104 (207)
T 1jsx_A           64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRF  104 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            36889999999999999988864 34599999999999855

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.81  E-value=5.5e-08  Score=89.16  Aligned_cols=99  Identities=22%  Similarity=0.233  Sum_probs=75.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++.+|||+|||+|.....++..++ +|+++|+++.+++.+     ..+.                       +++++..
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~~-----------------------~~~~~~~  106 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKA-----RQNY-----------------------PHLHFDV  106 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHC-----------------------TTSCEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCEEEE
Confidence            4678999999999999999888665 899999999988542     1110                       1344555


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|....+                                                                ..+.||+|+
T Consensus       107 ~d~~~~~----------------------------------------------------------------~~~~fD~v~  122 (279)
T 3ccf_A          107 ADARNFR----------------------------------------------------------------VDKPLDAVF  122 (279)
T ss_dssp             CCTTTCC----------------------------------------------------------------CSSCEEEEE
T ss_pred             CChhhCC----------------------------------------------------------------cCCCcCEEE
Confidence            5533210                                                                135799999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +..+++.....+.+++-+.+.|+ |+|++++..
T Consensus       123 ~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~  154 (279)
T 3ccf_A          123 SNAMLHWVKEPEAAIASIHQALK-SGGRFVAEF  154 (279)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             EcchhhhCcCHHHHHHHHHHhcC-CCcEEEEEe
Confidence            99999988888888899999997 889988764

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.81  E-value=1e-07  Score=84.27  Aligned_cols=136  Identities=19%  Similarity=0.164  Sum_probs=88.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ++++|||+|||+|..++.++..-  ..+|+++|+++.+++.     .+.|+...                 .+..++++.
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----------------~~~~~v~~~  115 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADI-----ARSNIERA-----------------NLNDRVEVR  115 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEEE
Confidence            68899999999999999988751  2489999999999854     33343321                 123457777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.   ++                                                  .+.     ....++||+|
T Consensus       116 ~~d~~~~---~~--------------------------------------------------~~~-----~~~~~~fD~v  137 (223)
T 3duw_A          116 TGLALDS---LQ--------------------------------------------------QIE-----NEKYEPFDFI  137 (223)
T ss_dssp             ESCHHHH---HH--------------------------------------------------HHH-----HTTCCCCSEE
T ss_pred             EcCHHHH---HH--------------------------------------------------HHH-----hcCCCCcCEE
Confidence            7774321   00                                                  000     0122579999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc----------cccHHHHHHhhhhcCceeEEEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv----------~gg~~~F~~~vee~G~f~~~~~  316 (330)
                      +..-.   ...+..+++.+.++|+ |+|++++..-. +.|.          ..+.++|.+.+.++..|.+.++
T Consensus       138 ~~d~~---~~~~~~~l~~~~~~L~-pgG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  205 (223)
T 3duw_A          138 FIDAD---KQNNPAYFEWALKLSR-PGTVIIGDNVV-REGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATAL  205 (223)
T ss_dssp             EECSC---GGGHHHHHHHHHHTCC-TTCEEEEESCS-GGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEcCC---cHHHHHHHHHHHHhcC-CCcEEEEeCCC-cCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEE
Confidence            86422   5567788888888886 88977654322 1110          1246889999988876776654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.80  E-value=3.4e-08  Score=86.29  Aligned_cols=97  Identities=21%  Similarity=0.211  Sum_probs=72.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      ++.+|||+|||+|..+..+   +..+|+++|+++.+++.+     ..|.                       +++++..+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a-----~~~~-----------------------~~~~~~~~   84 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVG-----RRRA-----------------------PEATWVRA   84 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHH-----HHHC-----------------------TTSEEECC
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHH-----HHhC-----------------------CCcEEEEc
Confidence            7889999999999877766   666899999999988542     1111                       13444444


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |....+                                                               ...+.||+|++
T Consensus        85 d~~~~~---------------------------------------------------------------~~~~~fD~v~~  101 (211)
T 2gs9_A           85 WGEALP---------------------------------------------------------------FPGESFDVVLL  101 (211)
T ss_dssp             CTTSCC---------------------------------------------------------------SCSSCEEEEEE
T ss_pred             ccccCC---------------------------------------------------------------CCCCcEEEEEE
Confidence            432211                                                               12368999999


Q ss_pred             eccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          256 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       256 sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      ..+++.......+++.+.++|+ |+|++++..
T Consensus       102 ~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~  132 (211)
T 2gs9_A          102 FTTLEFVEDVERVLLEARRVLR-PGGALVVGV  132 (211)
T ss_dssp             ESCTTTCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             cChhhhcCCHHHHHHHHHHHcC-CCCEEEEEe
Confidence            9999998888999999999997 899988875

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.80  E-value=5.9e-08  Score=87.22  Aligned_cols=133  Identities=17%  Similarity=0.227  Sum_probs=87.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      ++++|||+|||+|..++.++... ..+|+++|+++.+++.     .+.|+...                 .+..++++..
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  128 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQY-----AKQNLATY-----------------HFENQVRIIE  128 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEEEE
Confidence            68899999999999999988732 4699999999999855     23343321                 1234677777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+..                                                        .   +  ...++||+|+
T Consensus       129 ~d~~~~~--------------------------------------------------------~---~--~~~~~fD~V~  147 (232)
T 3ntv_A          129 GNALEQF--------------------------------------------------------E---N--VNDKVYDMIF  147 (232)
T ss_dssp             SCGGGCH--------------------------------------------------------H---H--HTTSCEEEEE
T ss_pred             CCHHHHH--------------------------------------------------------H---h--hccCCccEEE
Confidence            7643310                                                        0   0  0136899999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc---------------cccHHHHHHhhhhcCceeEEEE
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF---------------NNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv---------------~gg~~~F~~~vee~G~f~~~~~  316 (330)
                      ..   .....+..+++.+.++|+ |+|++++- .-.+.|.               ....++|.+.+.+..-|.+.++
T Consensus       148 ~~---~~~~~~~~~l~~~~~~Lk-pgG~lv~d-~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  219 (232)
T 3ntv_A          148 ID---AAKAQSKKFFEIYTPLLK-HQGLVITD-NVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFL  219 (232)
T ss_dssp             EE---TTSSSHHHHHHHHGGGEE-EEEEEEEE-CTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred             Ec---CcHHHHHHHHHHHHHhcC-CCeEEEEe-eCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            54   235668888888888896 88988763 1222221               0146788888877665665543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.80  E-value=1.4e-07  Score=83.60  Aligned_cols=37  Identities=30%  Similarity=0.461  Sum_probs=32.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ++++|||+|||+|..++.++..  .+|+++|+++.+++.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~   69 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEI   69 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHH
Confidence            4689999999999999888776  599999999999855

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.80  E-value=7.4e-09  Score=92.85  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=35.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ++.+|||+|||+|..++.++..+..+|+++|+++.+++.
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~   98 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQR   98 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHH
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHH
Confidence            578999999999999999887777799999999999865

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.79  E-value=6.6e-08  Score=86.74  Aligned_cols=39  Identities=36%  Similarity=0.553  Sum_probs=35.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -++++|||+|||+|..++.++..|. +|+++|+++.+++.
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~   78 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRV   78 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence            4678999999999999999988876 89999999999855

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.79  E-value=7.9e-08  Score=89.12  Aligned_cols=38  Identities=26%  Similarity=0.197  Sum_probs=33.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ++.+|||+|||+|..++.++..|. +|+++|+++.+++.
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~  119 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAA  119 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHH
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHH
Confidence            455999999999999999998876 89999999999855

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.79  E-value=1.7e-08  Score=98.24  Aligned_cols=47  Identities=32%  Similarity=0.268  Sum_probs=40.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ++++|||+|||+|..++.++..|+++|+++|+++.+++. ...|+..|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~-a~~n~~~n  263 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIET-AKENAKLN  263 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHc
Confidence            788999999999999999999888899999999999865 34555544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.78  E-value=1.1e-08  Score=102.71  Aligned_cols=63  Identities=29%  Similarity=0.430  Sum_probs=48.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ..++++|||+|||+|.+++.+++.++.+|+++|+++ +++. ...|+..|                     .+..+|++.
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~-A~~~~~~~---------------------gl~~~v~~~  212 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQH-AEVLVKSN---------------------NLTDRIVVI  212 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHH-HHHHHHHT---------------------TCTTTEEEE
T ss_pred             hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHH-HHHHHHHc---------------------CCCCcEEEE
Confidence            457899999999999999999998888999999998 7644 23444433                     133468888


Q ss_pred             ecccCC
Q 020125          174 AGDWEE  179 (330)
Q Consensus       174 ~gdW~~  179 (330)
                      .+|+.+
T Consensus       213 ~~d~~~  218 (480)
T 3b3j_A          213 PGKVEE  218 (480)
T ss_dssp             ESCTTT
T ss_pred             ECchhh
Confidence            887654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.78  E-value=2.9e-08  Score=91.51  Aligned_cols=127  Identities=14%  Similarity=0.217  Sum_probs=85.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      ..++.+|||+|||+|..++.++..  ...+|++.|+++.+++.     .+.|+..+.                . ..++.
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~----------------g-~~~v~  165 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKK-----AMDNLSEFY----------------D-IGNVR  165 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHH-----HHHHHHTTS----------------C-CTTEE
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHH-----HHHHHHhcC----------------C-CCcEE
Confidence            346789999999999999988875  24599999999998854     334433110                0 12466


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      +..+|+.+.                                                                ...++||
T Consensus       166 ~~~~d~~~~----------------------------------------------------------------~~~~~fD  181 (275)
T 1yb2_A          166 TSRSDIADF----------------------------------------------------------------ISDQMYD  181 (275)
T ss_dssp             EECSCTTTC----------------------------------------------------------------CCSCCEE
T ss_pred             EEECchhcc----------------------------------------------------------------CcCCCcc
Confidence            655554330                                                                0235799


Q ss_pred             EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEEEe
Q 020125          252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK  317 (330)
Q Consensus       252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~~~  317 (330)
                      +|++ +    ......+++.+.+.|+ |+|++++.....     .....+.+.+++.|+...+..+
T Consensus       182 ~Vi~-~----~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~-----~~~~~~~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          182 AVIA-D----IPDPWNHVQKIASMMK-PGSVATFYLPNF-----DQSEKTVLSLSASGMHHLETVE  236 (275)
T ss_dssp             EEEE-C----CSCGGGSHHHHHHTEE-EEEEEEEEESSH-----HHHHHHHHHSGGGTEEEEEEEE
T ss_pred             EEEE-c----CcCHHHHHHHHHHHcC-CCCEEEEEeCCH-----HHHHHHHHHHHHCCCeEEEEEE
Confidence            9998 3    3334566777777886 899999887543     2467888889998865555543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.78  E-value=7.6e-08  Score=86.48  Aligned_cols=127  Identities=21%  Similarity=0.194  Sum_probs=84.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      ..++.+|||+|||+|..++.++.. + ..+|++.|+++.+++.+ ..|+..|.   .                  ..++.
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a-~~~~~~~~---g------------------~~~v~  151 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQA-ERNVRAFW---Q------------------VENVR  151 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHH-HHHHHHHC---C------------------CCCEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHH-HHHHHHhc---C------------------CCCEE
Confidence            457889999999999999988876 4 46999999999998652 23333220   0                  12456


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      +..+|..+.+                                                               ...++||
T Consensus       152 ~~~~d~~~~~---------------------------------------------------------------~~~~~~D  168 (258)
T 2pwy_A          152 FHLGKLEEAE---------------------------------------------------------------LEEAAYD  168 (258)
T ss_dssp             EEESCGGGCC---------------------------------------------------------------CCTTCEE
T ss_pred             EEECchhhcC---------------------------------------------------------------CCCCCcC
Confidence            6555533210                                                               1235799


Q ss_pred             EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEEE
Q 020125          252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~~  316 (330)
                      +|+..     ......+++.+.++|+ |+|++++.....     ....++.+.+++.|+-..++.
T Consensus       169 ~v~~~-----~~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~l~~~gf~~~~~~  222 (258)
T 2pwy_A          169 GVALD-----LMEPWKVLEKAALALK-PDRFLVAYLPNI-----TQVLELVRAAEAHPFRLERVL  222 (258)
T ss_dssp             EEEEE-----SSCGGGGHHHHHHHEE-EEEEEEEEESCH-----HHHHHHHHHHTTTTEEEEEEE
T ss_pred             EEEEC-----CcCHHHHHHHHHHhCC-CCCEEEEEeCCH-----HHHHHHHHHHHHCCCceEEEE
Confidence            99972     3334456666777886 889988876432     246778888888886555443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.78  E-value=7.7e-08  Score=88.15  Aligned_cols=48  Identities=17%  Similarity=0.220  Sum_probs=40.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      -+|.+|||+|||+|.+++++++.| +.+|+++|+++.+++. ...|+..|
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~-A~~N~~~~   68 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQS-ALKNVSEH   68 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHH-HHHHHHHT
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            367899999999999999999987 5689999999999965 34555554

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.78  E-value=7.2e-08  Score=84.36  Aligned_cols=126  Identities=16%  Similarity=0.137  Sum_probs=87.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .++.+|||+|||+|..+..++..| .+|+++|+++.+++.+     ..|                      .   .++..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~-----~~~----------------------~---~~~~~   79 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQA-----KEK----------------------L---DHVVL   79 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHH-----HTT----------------------S---SEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHH-----HHh----------------------C---CcEEE
Confidence            467899999999999999988876 6999999999887431     100                      1   12333


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|.....                                                             .....++||+|+
T Consensus        80 ~d~~~~~-------------------------------------------------------------~~~~~~~fD~v~   98 (230)
T 3cc8_A           80 GDIETMD-------------------------------------------------------------MPYEEEQFDCVI   98 (230)
T ss_dssp             SCTTTCC-------------------------------------------------------------CCSCTTCEEEEE
T ss_pred             cchhhcC-------------------------------------------------------------CCCCCCccCEEE
Confidence            3322210                                                             001246899999


Q ss_pred             EeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc------------cc------------ccccHHHHHHhhhhcCc
Q 020125          255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY------------VG------------FNNAARHLRSLVDEEGI  310 (330)
Q Consensus       255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y------------fG------------v~gg~~~F~~~vee~G~  310 (330)
                      +.++++.......+++.+.++|+ |+|++++......            +.            ..-...++.+++++.|+
T Consensus        99 ~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  177 (230)
T 3cc8_A           99 FGDVLEHLFDPWAVIEKVKPYIK-QNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGY  177 (230)
T ss_dssp             EESCGGGSSCHHHHHHHTGGGEE-EEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTE
T ss_pred             ECChhhhcCCHHHHHHHHHHHcC-CCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCC
Confidence            99999988888888888988896 8899988753210            00            01157889999999996


Q ss_pred             eeE
Q 020125          311 FGA  313 (330)
Q Consensus       311 f~~  313 (330)
                      -..
T Consensus       178 ~~~  180 (230)
T 3cc8_A          178 SIS  180 (230)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            333

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.77  E-value=3.1e-08  Score=88.93  Aligned_cols=100  Identities=14%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      ..++.+|||+|||+|..+..++..  ++ +|+++|+++.+++.+     ..|                       .++++
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a-----~~~-----------------------~~~~~   81 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYGVN-VITGIDSDDDMLEKA-----ADR-----------------------LPNTN   81 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHCTT-SEEEEESCHHHHHHH-----HHH-----------------------STTSE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCCCC-EEEEEECCHHHHHHH-----HHh-----------------------CCCcE
Confidence            346789999999999999888765  44 899999999988542     111                       02355


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      +..+|....+                                                                ..++||
T Consensus        82 ~~~~d~~~~~----------------------------------------------------------------~~~~fD   97 (259)
T 2p35_A           82 FGKADLATWK----------------------------------------------------------------PAQKAD   97 (259)
T ss_dssp             EEECCTTTCC----------------------------------------------------------------CSSCEE
T ss_pred             EEECChhhcC----------------------------------------------------------------ccCCcC
Confidence            5555533210                                                                235799


Q ss_pred             EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +|++..+++.......+++-+.++|+ |+|++++..
T Consensus        98 ~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~  132 (259)
T 2p35_A           98 LLYANAVFQWVPDHLAVLSQLMDQLE-SGGVLAVQM  132 (259)
T ss_dssp             EEEEESCGGGSTTHHHHHHHHGGGEE-EEEEEEEEE
T ss_pred             EEEEeCchhhCCCHHHHHHHHHHhcC-CCeEEEEEe
Confidence            99999999998888899999999997 889988875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.77  E-value=1.9e-08  Score=105.47  Aligned_cols=48  Identities=27%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .+|++|||+|||+|..++.++..|+++|++.|+++.+++. ...|+.+|
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~-a~~N~~~n  585 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEW-AERNLRLN  585 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHc
Confidence            3799999999999999999999999899999999999966 35666555

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.77  E-value=2.9e-07  Score=82.03  Aligned_cols=71  Identities=17%  Similarity=0.079  Sum_probs=46.6

Q ss_pred             CCCCCCCC----CcccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           62 MISSKPDG----FLKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        62 l~~~~y~g----g~k~W~ss-~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      +.+..|..    ..+.|..- ..++..+.....  ...-+|.+|||+|||+|..+..++.. +..+|++.|+++.+++.
T Consensus        20 ~~~~~Y~~~~~~~y~~~~~~~~~l~~~~~~~l~--~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~   96 (210)
T 1nt2_A           20 KYGSHYGEKVFDGYREWVPWRSKLAAMILKGHR--LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEK   96 (210)
T ss_dssp             SCCCSSSCCEETTEEECCGGGCHHHHHHHTSCC--CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHH
T ss_pred             CCccccchhhhhhhhhcChhHHHHHHHHHhhcc--cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence            33455665    55677543 233444433221  12346889999999999998877654 34589999999998754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.76  E-value=1.2e-07  Score=78.79  Aligned_cols=135  Identities=15%  Similarity=0.167  Sum_probs=87.2

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      .+...+.+.+...    ....++.+|||+|||+|..++.++.. |. .+|+++|+++ +++.                  
T Consensus         5 r~~~~l~~~~~~~----~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------------   61 (180)
T 1ej0_A            5 RAWFKLDEIQQSD----KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------------   61 (180)
T ss_dssp             HHHHHHHHHHHHH----CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------------
T ss_pred             hHHHHHHHHHHHh----CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------------
Confidence            3445555555543    12456789999999999999988776 54 6999999999 6411                  


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                     .++++..+|+.+.+...                                                
T Consensus        62 ---------------~~~~~~~~d~~~~~~~~------------------------------------------------   78 (180)
T 1ej0_A           62 ---------------VGVDFLQGDFRDELVMK------------------------------------------------   78 (180)
T ss_dssp             ---------------TTEEEEESCTTSHHHHH------------------------------------------------
T ss_pred             ---------------CcEEEEEcccccchhhh------------------------------------------------
Confidence                           13566666665532100                                                


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccH-----------HHHHHHHHHHcCCCCcEEEEEeccccccccccHHHH
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSL-----------KKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHL  301 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~-----------~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F  301 (330)
                            . .......++||+|++...++.....           ..+++.+.++|+ |+|++++....     ......+
T Consensus        79 ------~-~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~-----~~~~~~~  145 (180)
T 1ej0_A           79 ------A-LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA-PGGSFVVKVFQ-----GEGFDEY  145 (180)
T ss_dssp             ------H-HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEES-----STTHHHH
T ss_pred             ------h-hhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcC-CCcEEEEEEec-----CCcHHHH
Confidence                  0 0000124689999997776654443           577788888886 88998876532     2346777


Q ss_pred             HHhhhhc
Q 020125          302 RSLVDEE  308 (330)
Q Consensus       302 ~~~vee~  308 (330)
                      .+.+++.
T Consensus       146 ~~~~~~~  152 (180)
T 1ej0_A          146 LREIRSL  152 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7777764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.76  E-value=3e-07  Score=82.11  Aligned_cols=40  Identities=28%  Similarity=0.208  Sum_probs=35.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++.+|||+|||+|..++.++.. ..+|+++|+++++++.
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~  128 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKT  128 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHH
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHH
Confidence            347889999999999999998887 5699999999999855

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.76  E-value=9e-08  Score=85.64  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=34.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|..++.++.. |..+|+++|+++.+++.
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~  113 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRE  113 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHH
Confidence            36789999999999999988865 65799999999998854

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.76  E-value=5.3e-08  Score=86.19  Aligned_cols=39  Identities=15%  Similarity=0.155  Sum_probs=34.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -++++|||+|||+|..+..++..+. +|+++|+++.+++.
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~   77 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTH   77 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHH
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHH
Confidence            3678999999999999999888776 89999999998854

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.76  E-value=9.9e-09  Score=92.91  Aligned_cols=40  Identities=15%  Similarity=0.149  Sum_probs=35.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -+|.+|||+|||+|.....++..+..+|+++|+++.+++.
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~   98 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQR   98 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHH
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHH
Confidence            3689999999999999998887766789999999999855

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.76  E-value=4.6e-08  Score=87.59  Aligned_cols=107  Identities=16%  Similarity=0.095  Sum_probs=79.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      -++.+|||+|||+|..++.++..+. +|+++|+++.+++.+     +.|..                     ..+++|..
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a-----~~~~~---------------------~~~~~~~~  107 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIA-----AKENT---------------------AANISYRL  107 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHH-----HHHSC---------------------CTTEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHH-----HHhCc---------------------ccCceEEE
Confidence            4678999999999999999998887 899999999988542     22210                     12577777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+.+...                                                   .+       .....||+|+
T Consensus       108 ~d~~~~~~~~---------------------------------------------------~~-------~~~~~~d~v~  129 (245)
T 3ggd_A          108 LDGLVPEQAA---------------------------------------------------QI-------HSEIGDANIY  129 (245)
T ss_dssp             CCTTCHHHHH---------------------------------------------------HH-------HHHHCSCEEE
T ss_pred             Cccccccccc---------------------------------------------------cc-------ccccCccEEE
Confidence            7765532100                                                   00       0113599999


Q ss_pred             EeccccCcc--cHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          255 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       255 asD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      +..+++...  ....+++-+.+.|+ |+|++++..
T Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~  163 (245)
T 3ggd_A          130 MRTGFHHIPVEKRELLGQSLRILLG-KQGAMYLIE  163 (245)
T ss_dssp             EESSSTTSCGGGHHHHHHHHHHHHT-TTCEEEEEE
T ss_pred             EcchhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence            999999887  78899999999996 889877764

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.75  E-value=1.5e-07  Score=87.97  Aligned_cols=79  Identities=19%  Similarity=0.247  Sum_probs=54.8

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccC
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ  154 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~  154 (330)
                      +.+..|++++.+...    ..++.+|||+|||+|..++.++.....+|+++|+++.+++. ...|+..|.          
T Consensus       106 ~~te~lv~~~l~~~~----~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~-A~~n~~~~~----------  170 (284)
T 1nv8_A          106 PETEELVELALELIR----KYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEI-ARKNAERHG----------  170 (284)
T ss_dssp             TTHHHHHHHHHHHHH----HHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHH-HHHHHHHTT----------
T ss_pred             hhHHHHHHHHHHHhc----ccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHcC----------
Confidence            344556666655431    12567999999999999999887644599999999999965 334444331          


Q ss_pred             CCCCCCCcccCCCCceeeeecccCC
Q 020125          155 PESSLTPSRQTLAPSVHFYAGDWEE  179 (330)
Q Consensus       155 ~~s~~~~~~~~l~~~v~~~~gdW~~  179 (330)
                                 +..+++|..+||.+
T Consensus       171 -----------l~~~v~~~~~D~~~  184 (284)
T 1nv8_A          171 -----------VSDRFFVRKGEFLE  184 (284)
T ss_dssp             -----------CTTSEEEEESSTTG
T ss_pred             -----------CCCceEEEECcchh
Confidence                       23358888888755

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.75  E-value=1.6e-07  Score=82.90  Aligned_cols=138  Identities=19%  Similarity=0.186  Sum_probs=88.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .++++|||+|||+|..++.++..  +..+|+++|+++.+++.     .+.|+..+                 .+..++++
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----------------~~~~~v~~  120 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTAL-----AKEYWEKA-----------------GLSDKIGL  120 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHH-----HHHHHHHC-----------------CCCCceEE
Confidence            36789999999999999998875  24599999999999855     33343321                 12345777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+.   ++.                                                  .    ......++||+
T Consensus       121 ~~~d~~~~---~~~--------------------------------------------------~----~~~~~~~~fD~  143 (225)
T 3tr6_A          121 RLSPAKDT---LAE--------------------------------------------------L----IHAGQAWQYDL  143 (225)
T ss_dssp             EESCHHHH---HHH--------------------------------------------------H----HTTTCTTCEEE
T ss_pred             EeCCHHHH---HHH--------------------------------------------------h----hhccCCCCccE
Confidence            77775331   000                                                  0    00001268999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc----------cccHHHHHHhhhhcCceeEEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv----------~gg~~~F~~~vee~G~f~~~~~  316 (330)
                      |+. |.  ....+..+++.+.++|+ |+|++++..-. +.|.          ....+.|.+.+.++.-|...++
T Consensus       144 v~~-~~--~~~~~~~~l~~~~~~L~-pgG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  212 (225)
T 3tr6_A          144 IYI-DA--DKANTDLYYEESLKLLR-EGGLIAVDNVL-RRGQVADEENQSENNQLIRLFNQKVYKDERVDMILI  212 (225)
T ss_dssp             EEE-CS--CGGGHHHHHHHHHHHEE-EEEEEEEECSS-GGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEE-CC--CHHHHHHHHHHHHHhcC-CCcEEEEeCCC-cCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEE
Confidence            993 22  34567788888888897 88988875322 1121          1156888888887765655543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.74  E-value=7.6e-08  Score=88.95  Aligned_cols=49  Identities=10%  Similarity=0.112  Sum_probs=40.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .-+|.+|||+|||+|.+++++++.| +.+|+++|+++.+++. ...|+..|
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~-A~~N~~~~   68 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQS-AQKQVRSS   68 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHH-HHHHHHHT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            3467899999999999999999987 5689999999999966 35566555

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.73  E-value=4.8e-08  Score=90.12  Aligned_cols=67  Identities=15%  Similarity=0.102  Sum_probs=47.2

Q ss_pred             CCCccEEEEeccccC----cccHHHHHHHHHHHcCCCCcEEEEEe--ccccccc--------cccHHHHHHhhhhcCcee
Q 020125          247 EGGYDVILLTEIPYS----VTSLKKLYLLIKKCLRPPYGVVYLAT--KKNYVGF--------NNAARHLRSLVDEEGIFG  312 (330)
Q Consensus       247 ~~~fDvILasD~iY~----~~~~~~L~~~i~~~L~~p~Gv~~lA~--k~~yfGv--------~gg~~~F~~~vee~G~f~  312 (330)
                      .+.||+|++..+++.    ......+++-+.++|+ |+|++++..  ...++..        .-...++.+++++.|+-.
T Consensus       172 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~  250 (289)
T 2g72_A          172 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLR-PGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV  250 (289)
T ss_dssp             CSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred             CCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeE
Confidence            467999999999987    5567778888888887 899988762  1111101        125788899999999643


Q ss_pred             EE
Q 020125          313 AH  314 (330)
Q Consensus       313 ~~  314 (330)
                      .+
T Consensus       251 ~~  252 (289)
T 2g72_A          251 RD  252 (289)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.73  E-value=5.4e-08  Score=90.19  Aligned_cols=49  Identities=16%  Similarity=0.080  Sum_probs=39.5

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .-++++|||+|||+|..++.+++. ++.+|++.|+++.+++. ...|+..|
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~-a~~n~~~n  166 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHY-LCENIKLN  166 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHH-HHHHHHHT
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHHHc
Confidence            347889999999999999999876 46699999999999865 24454444

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.73  E-value=2.6e-07  Score=89.35  Aligned_cols=48  Identities=15%  Similarity=0.166  Sum_probs=39.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ..++++|||+| |+|..++.++..++ .+|++.|+++.+++. .+.|+..|
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~-a~~~~~~~  218 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKF-IEKAANEI  218 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHH-HHHHHHHH
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            35789999999 99999999998876 799999999999965 34454443

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.72  E-value=1.1e-07  Score=89.53  Aligned_cols=151  Identities=13%  Similarity=0.178  Sum_probs=93.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      ++++|||+|||+|.....+++. +..+|++.|+++.+++.+ +.|+... ...  .               ..+++++..
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a-~~~~~~~-~~~--~---------------~~~~v~~~~  155 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQS-KQHFPQI-SRS--L---------------ADPRATVRV  155 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHH-HHHCHHH-HGG--G---------------GCTTEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHHhHHh-hcc--c---------------CCCcEEEEE
Confidence            5789999999999999988875 456999999999998663 2332210 000  0               124566666


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+..                                                            . ....++||+|+
T Consensus       156 ~D~~~~~------------------------------------------------------------~-~~~~~~fDvIi  174 (304)
T 3bwc_A          156 GDGLAFV------------------------------------------------------------R-QTPDNTYDVVI  174 (304)
T ss_dssp             SCHHHHH------------------------------------------------------------H-SSCTTCEEEEE
T ss_pred             CcHHHHH------------------------------------------------------------H-hccCCceeEEE
Confidence            6643210                                                            0 00246899999


Q ss_pred             EeccccCc--ccH--HHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEEEe-ecCC--cceeee
Q 020125          255 LTEIPYSV--TSL--KKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK-EMTD--RDIWKF  327 (330)
Q Consensus       255 asD~iY~~--~~~--~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~~~-e~~d--~~i~~~  327 (330)
                      +.-..+..  ..+  ..+++.+.++|+ |+|++++.....++. ......+.+.+++.|+-.++... .++.  ...|.|
T Consensus       175 ~d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~~~~~~-~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f  252 (304)
T 3bwc_A          175 IDTTDPAGPASKLFGEAFYKDVLRILK-PDGICCNQGESIWLD-LELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGT  252 (304)
T ss_dssp             EECC---------CCHHHHHHHHHHEE-EEEEEEEEECCTTTC-HHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcC-CCcEEEEecCCcccc-hHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEE
Confidence            83222211  111  577888888997 899988875543322 23567888889898864555433 2333  467776


Q ss_pred             e
Q 020125          328 F  328 (330)
Q Consensus       328 ~  328 (330)
                      .
T Consensus       253 ~  253 (304)
T 3bwc_A          253 L  253 (304)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.70  E-value=1e-07  Score=85.73  Aligned_cols=131  Identities=20%  Similarity=0.180  Sum_probs=84.8

Q ss_pred             CCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCC-Cceeee
Q 020125           97 GKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFY  173 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~-~~v~~~  173 (330)
                      +.+|||+|||+|..++.++.. + ..+|+++|+++++++.     .+.|+..+                 .+. .++++.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----------------g~~~~~i~~~  114 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQ-----AKALFREA-----------------GYSPSRVRFL  114 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHH-----HHHHHHHT-----------------TCCGGGEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCcCcEEEE
Confidence            449999999999999988763 2 3589999999999865     23343321                 122 367777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.   ++                                                          ....++||+|
T Consensus       115 ~gda~~~---l~----------------------------------------------------------~~~~~~fD~V  133 (221)
T 3dr5_A          115 LSRPLDV---MS----------------------------------------------------------RLANDSYQLV  133 (221)
T ss_dssp             CSCHHHH---GG----------------------------------------------------------GSCTTCEEEE
T ss_pred             EcCHHHH---HH----------------------------------------------------------HhcCCCcCeE
Confidence            6663221   00                                                          0114689999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc------c----ccHHHHHHhhhhcCceeEEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF------N----NAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv------~----gg~~~F~~~vee~G~f~~~~  315 (330)
                      +.. .  ....+..+++.+.++|+ |+|++++..-- +.|.      .    .+.++|.+++.+..-+.+.+
T Consensus       134 ~~d-~--~~~~~~~~l~~~~~~Lk-pGG~lv~dn~~-~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  200 (221)
T 3dr5_A          134 FGQ-V--SPMDLKALVDAAWPLLR-RGGALVLADAL-LDGTIADQTRKDRDTQAARDADEYIRSIEGAHVAR  200 (221)
T ss_dssp             EEC-C--CTTTHHHHHHHHHHHEE-EEEEEEETTTT-GGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             EEc-C--cHHHHHHHHHHHHHHcC-CCcEEEEeCCC-CCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEE
Confidence            863 2  34567778888888897 88988864211 1111      0    14588999998876566554

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.69  E-value=1.8e-07  Score=83.20  Aligned_cols=39  Identities=13%  Similarity=-0.121  Sum_probs=33.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      .+.+|||+|||+|..++.++.. ...+|+++|+++.+++.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~   77 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVT   77 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHH
Confidence            4679999999999999988765 24589999999999865

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.69  E-value=1e-07  Score=83.33  Aligned_cols=40  Identities=18%  Similarity=0.013  Sum_probs=35.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++.+|||+|||+|..++.++..+ .+|+++|+++.+++.
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~  114 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQ  114 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHH
Confidence            3578899999999999999988885 599999999999855

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.68  E-value=1.4e-07  Score=90.02  Aligned_cols=45  Identities=22%  Similarity=0.279  Sum_probs=37.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +|++|||+|||+|..++. +. ++.+|++.|+++.+++. ...|+..|
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~-a~~n~~~n  239 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIEL-LKKNIKLN  239 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            788999999999999999 77 78899999999999865 34555444

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.68  E-value=1.1e-07  Score=85.37  Aligned_cols=146  Identities=21%  Similarity=0.268  Sum_probs=90.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ++++|||+|||+|..++.++...  ..+|+++|+++.+++.+ +.|+..+                     .+..++++.
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a-~~~~~~~---------------------g~~~~v~~~  117 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVA-RKYWKEN---------------------GLENKIFLK  117 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHH-HHHHHHT---------------------TCGGGEEEE
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHHHHHc---------------------CCCCCEEEE
Confidence            67899999999999999888752  45999999999988552 2333221                     122357777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCC--CCcc
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGE--GGYD  251 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~--~~fD  251 (330)
                      .+|..+.   ++.+.                    ..                    ... ..|...+    ..  ++||
T Consensus       118 ~~d~~~~---~~~~~--------------------~~--------------------~~~-~~~~~~f----~~~~~~fD  149 (239)
T 2hnk_A          118 LGSALET---LQVLI--------------------DS--------------------KSA-PSWASDF----AFGPSSID  149 (239)
T ss_dssp             ESCHHHH---HHHHH--------------------HC--------------------SSC-CGGGTTT----CCSTTCEE
T ss_pred             ECCHHHH---HHHHH--------------------hh--------------------ccc-ccccccc----cCCCCCcC
Confidence            7764331   00000                    00                    000 0243222    22  6899


Q ss_pred             EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc----------cccHHHHHHhhhhcCceeEEEE
Q 020125          252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv----------~gg~~~F~~~vee~G~f~~~~~  316 (330)
                      +|+..   +....+..+++.+.++|+ |+|++++..- .+.|.          ....+.|.+.+.+...|.+.++
T Consensus       150 ~I~~~---~~~~~~~~~l~~~~~~L~-pgG~lv~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (239)
T 2hnk_A          150 LFFLD---ADKENYPNYYPLILKLLK-PGGLLIADNV-LWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLV  219 (239)
T ss_dssp             EEEEC---SCGGGHHHHHHHHHHHEE-EEEEEEEECS-SGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEEEe---CCHHHHHHHHHHHHHHcC-CCeEEEEEcc-ccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEE
Confidence            99976   445667788888888896 8899887642 11121          1135788888887766666554

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.66  E-value=2.3e-07  Score=83.98  Aligned_cols=49  Identities=10%  Similarity=0.115  Sum_probs=39.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANL  144 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N~  144 (330)
                      -++.+|||+|||+|..++.++..++ .+|++.|+++.+++. ...|+..|.
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~-a~~~~~~~~   97 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNY-VEDRIIALR   97 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHH-HHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHH-HHHHHHHHh
Confidence            3678999999999999999988765 489999999999865 345665553

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.64  E-value=8.5e-08  Score=94.09  Aligned_cols=46  Identities=26%  Similarity=0.162  Sum_probs=40.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +|++|||+|||+|..++.++..|++ |++.|+++.+++. +..|+..|
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~-a~~n~~~n  259 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGV-LDQAALRL  259 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHH-HHHHHHHH
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHH-HHHHHHHh
Confidence            4999999999999999999999986 9999999999976 45666666

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.64  E-value=4.5e-07  Score=86.65  Aligned_cols=53  Identities=23%  Similarity=0.118  Sum_probs=41.2

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC  134 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~  134 (330)
                      ..++..+....    ..-++.+|||+|||+|...+.++..+  ..+|++.|+++.+++.
T Consensus       189 ~~la~~l~~~~----~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~  243 (354)
T 3tma_A          189 PVLAQALLRLA----DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGL  243 (354)
T ss_dssp             HHHHHHHHHHT----TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHh----CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHH
Confidence            44666665542    23467899999999999999988754  3589999999999865

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.64  E-value=8.6e-08  Score=92.98  Aligned_cols=46  Identities=30%  Similarity=0.249  Sum_probs=38.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ++++|||+|||+|..++.++.. +.+|+++|+++.+++. ...|+..|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~-a~~n~~~n  254 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRR-AEENARLN  254 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHH-HHHHHHHc
Confidence            7889999999999999999987 6799999999999865 34555544

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.64  E-value=2.2e-06  Score=80.56  Aligned_cols=132  Identities=16%  Similarity=0.164  Sum_probs=88.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      +++++|||+|||+|..++.++.. ...+++++|+ +.+++.. ..|+..+.                     +..+++|.
T Consensus       166 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~~~~~~~---------------------~~~~v~~~  222 (334)
T 2ip2_A          166 FRGRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVA-RDNLSSLL---------------------AGERVSLV  222 (334)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHH-HHHTHHHH---------------------HTTSEEEE
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHH-HHHHhhcC---------------------CCCcEEEe
Confidence            34489999999999999887765 2348999999 8887542 23332221                     12357776


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+ +                                                                ...+||+|
T Consensus       223 ~~d~~~-~----------------------------------------------------------------~~~~~D~v  237 (334)
T 2ip2_A          223 GGDMLQ-E----------------------------------------------------------------VPSNGDIY  237 (334)
T ss_dssp             ESCTTT-C----------------------------------------------------------------CCSSCSEE
T ss_pred             cCCCCC-C----------------------------------------------------------------CCCCCCEE
Confidence            666322 0                                                                12479999


Q ss_pred             EEecccc--CcccHHHHHHHHHHHcCCCCcEEEEEeccc----------cc---------cccccHHHHHHhhhhcCcee
Q 020125          254 LLTEIPY--SVTSLKKLYLLIKKCLRPPYGVVYLATKKN----------YV---------GFNNAARHLRSLVDEEGIFG  312 (330)
Q Consensus       254 LasD~iY--~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~----------yf---------Gv~gg~~~F~~~vee~G~f~  312 (330)
                      +...+++  .......+++-+.+.|+ |+|++++.....          ++         |..-...+|.+++++.|+-.
T Consensus       238 ~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  316 (334)
T 2ip2_A          238 LLSRIIGDLDEAASLRLLGNCREAMA-GDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAV  316 (334)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHSC-TTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred             EEchhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCce
Confidence            9999996  34445588888888896 889988873110          00         22236889999999999644


Q ss_pred             EEE
Q 020125          313 AHL  315 (330)
Q Consensus       313 ~~~  315 (330)
                      .++
T Consensus       317 ~~~  319 (334)
T 2ip2_A          317 ERI  319 (334)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            444

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.63  E-value=4.1e-07  Score=80.33  Aligned_cols=69  Identities=12%  Similarity=0.112  Sum_probs=51.1

Q ss_pred             CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc----------------cc--ccccHHHHHHhhhhc
Q 020125          247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----------------VG--FNNAARHLRSLVDEE  308 (330)
Q Consensus       247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y----------------fG--v~gg~~~F~~~vee~  308 (330)
                      .+.||+|++..+++.......+++.+.+.|+ |+|++++......                +.  ..-...++.+++++.
T Consensus       100 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  178 (219)
T 1vlm_A          100 DESFDFALMVTTICFVDDPERALKEAYRILK-KGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKA  178 (219)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHT
T ss_pred             CCCeeEEEEcchHhhccCHHHHHHHHHHHcC-CCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHC
Confidence            3689999999999988888899999999996 8899888742110                00  012578899999999


Q ss_pred             CceeEEEE
Q 020125          309 GIFGAHLI  316 (330)
Q Consensus       309 G~f~~~~~  316 (330)
                      |+-..++.
T Consensus       179 Gf~~~~~~  186 (219)
T 1vlm_A          179 GFEEFKVV  186 (219)
T ss_dssp             TCEEEEEE
T ss_pred             CCeEEEEe
Confidence            97444443

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.63  E-value=3.4e-07  Score=80.26  Aligned_cols=60  Identities=17%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCce
Q 020125          247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f  311 (330)
                      .+.||+|++..+++. .....+++.+.++|+ |+|++++..-...+   ....++.+.+++.|+-
T Consensus       113 ~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~-~gG~l~i~~~~~~~---~~~~~~~~~l~~~Gf~  172 (215)
T 2zfu_A          113 DESVDVAVFCLSLMG-TNIRDFLEEANRVLK-PGGLLKVAEVSSRF---EDVRTFLRAVTKLGFK  172 (215)
T ss_dssp             TTCEEEEEEESCCCS-SCHHHHHHHHHHHEE-EEEEEEEEECGGGC---SCHHHHHHHHHHTTEE
T ss_pred             CCCEeEEEEehhccc-cCHHHHHHHHHHhCC-CCeEEEEEEcCCCC---CCHHHHHHHHHHCCCE
Confidence            367999999999974 677888888888997 89999987544433   2688999999999963

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.62  E-value=1.2e-06  Score=83.44  Aligned_cols=132  Identities=14%  Similarity=0.090  Sum_probs=89.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      -++++|||+|||+|..++.++... ..+|+++|+ +.+++.     ...|+...                 .+..+++|.
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~  245 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL-----VNENAAEK-----------------GVADRMRGI  245 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHH-----HHHHHHhc-----------------CCCCCEEEE
Confidence            467899999999999998887653 348999999 988854     33333311                 123357777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.+                                                                 ...+|+|
T Consensus       246 ~~d~~~~~-----------------------------------------------------------------~~~~D~v  260 (359)
T 1x19_A          246 AVDIYKES-----------------------------------------------------------------YPEADAV  260 (359)
T ss_dssp             ECCTTTSC-----------------------------------------------------------------CCCCSEE
T ss_pred             eCccccCC-----------------------------------------------------------------CCCCCEE
Confidence            77643311                                                                 1123999


Q ss_pred             EEeccccCccc--HHHHHHHHHHHcCCCCcEEEEEeccc----------------ccccc------ccHHHHHHhhhhcC
Q 020125          254 LLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGFN------NAARHLRSLVDEEG  309 (330)
Q Consensus       254 LasD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA~k~~----------------yfGv~------gg~~~F~~~vee~G  309 (330)
                      ++..++++-..  ...+++-+.+.|+ |+|++++..-..                .++.+      -...+|.+++++.|
T Consensus       261 ~~~~vlh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aG  339 (359)
T 1x19_A          261 LFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLG  339 (359)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHT
T ss_pred             EEechhccCCHHHHHHHHHHHHHhcC-CCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCC
Confidence            99999976544  7778888888886 889987764110                01212      46788999999999


Q ss_pred             ceeEEE
Q 020125          310 IFGAHL  315 (330)
Q Consensus       310 ~f~~~~  315 (330)
                      +-.+++
T Consensus       340 f~~v~~  345 (359)
T 1x19_A          340 YKDVTM  345 (359)
T ss_dssp             CEEEEE
T ss_pred             CceEEE
Confidence            644444

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.62  E-value=6e-07  Score=86.90  Aligned_cols=58  Identities=21%  Similarity=0.214  Sum_probs=43.6

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      ..++..|....     .-++.+|||+|||+|...+.++..+. .+|+++|+++.+++.+ +.|+.
T Consensus       204 ~~la~~l~~~~-----~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A-~~n~~  262 (373)
T 3tm4_A          204 ASIANAMIELA-----ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGA-EMNAL  262 (373)
T ss_dssp             HHHHHHHHHHH-----TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHhh-----cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHH-HHHHH
Confidence            44566555442     23678999999999999999998765 3899999999999652 34443

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.62  E-value=2e-07  Score=81.92  Aligned_cols=129  Identities=14%  Similarity=0.144  Sum_probs=82.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ++++|||+|||+|..++.++.. + ..+|+++|+++.+++.+ ..|+..+.                     +..++++.
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a-~~~~~~~~---------------------~~~~v~~~  113 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHA-RRMLHDNG---------------------LIDRVELQ  113 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHH-HHHHHHHS---------------------GGGGEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHHHHHCC---------------------CCceEEEE
Confidence            5789999999999999998865 1 35899999999998652 34443221                     22356666


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.   +                                                           ....+ ||+|
T Consensus       114 ~~d~~~~---~-----------------------------------------------------------~~~~~-fD~v  130 (210)
T 3c3p_A          114 VGDPLGI---A-----------------------------------------------------------AGQRD-IDIL  130 (210)
T ss_dssp             ESCHHHH---H-----------------------------------------------------------TTCCS-EEEE
T ss_pred             EecHHHH---h-----------------------------------------------------------ccCCC-CCEE
Confidence            6653221   0                                                           00124 9999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccccc---------ccccHHHHHHhhhhcCceeEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG---------FNNAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfG---------v~gg~~~F~~~vee~G~f~~~  314 (330)
                      +..   .....+..+++.+.++|+ |+|++++..- .+.|         ....+++|.+.+.+..-+...
T Consensus       131 ~~~---~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (210)
T 3c3p_A          131 FMD---CDVFNGADVLERMNRCLA-KNALLIAVNA-LRRGSVAESHEDPETAALREFNHHLSRRRDFFTT  195 (210)
T ss_dssp             EEE---TTTSCHHHHHHHHGGGEE-EEEEEEEESS-SSCC------------CCCHHHHHHTTCTTEEEE
T ss_pred             EEc---CChhhhHHHHHHHHHhcC-CCeEEEEECc-cccCcccCcccchHHHHHHHHHHHHhhCCCeEEE
Confidence            875   335677888888888896 8898876431 1111         112466788877665444443

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.62  E-value=1.6e-07  Score=85.61  Aligned_cols=138  Identities=20%  Similarity=0.262  Sum_probs=89.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .++++|||+|||+|..++.++.. + ..+|+++|+++++++. .+.|+..+                     .+..++++
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~---------------------g~~~~i~~  116 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKH-AHPYWREA---------------------KQEHKIKL  116 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCC-SHHHHHHT---------------------TCTTTEEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHc---------------------CCCCcEEE
Confidence            36789999999999999998863 1 3589999999998855 33444322                     12346788


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+.   ++.                                                  .   .+ ....++||+
T Consensus       117 ~~gda~~~---l~~--------------------------------------------------~---~~-~~~~~~fD~  139 (242)
T 3r3h_A          117 RLGPALDT---LHS--------------------------------------------------L---LN-EGGEHQFDF  139 (242)
T ss_dssp             EESCHHHH---HHH--------------------------------------------------H---HH-HHCSSCEEE
T ss_pred             EEcCHHHH---HHH--------------------------------------------------H---hh-ccCCCCEeE
Confidence            77774321   000                                                  0   00 001368999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc----------cccHHHHHHhhhhcCceeEEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv----------~gg~~~F~~~vee~G~f~~~~~  316 (330)
                      |+..-   ....+..+++.+.++|+ |+|++++..- .+.|.          ....++|.+.+.++.-|.+.++
T Consensus       140 V~~d~---~~~~~~~~l~~~~~~Lk-pGG~lv~d~~-~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  208 (242)
T 3r3h_A          140 IFIDA---DKTNYLNYYELALKLVT-PKGLIAIDNI-FWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLL  208 (242)
T ss_dssp             EEEES---CGGGHHHHHHHHHHHEE-EEEEEEEECS-SSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             EEEcC---ChHHhHHHHHHHHHhcC-CCeEEEEECC-ccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEE
Confidence            98642   25667778888888896 8898887432 22221          1247889999988766666543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.62  E-value=1.2e-07  Score=85.24  Aligned_cols=39  Identities=10%  Similarity=0.093  Sum_probs=33.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      .+.+|||+|||+|..++.++... ..+|++.|+++.+++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~   73 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA   73 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHH
Confidence            57799999999999999888654 3589999999999855

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.62  E-value=7.7e-07  Score=77.35  Aligned_cols=41  Identities=24%  Similarity=0.408  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++++|||+|||+|..++.++..|+.+|++.|+++.+++.
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~   89 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET   89 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence            35788999999999999999988888789999999998854

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.61  E-value=5.5e-07  Score=79.84  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=33.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|..++.++.. | ..+|++.|+++.+++.
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~  113 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRE  113 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHH
Confidence            46889999999999999988864 4 3699999999998854

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.61  E-value=2.2e-07  Score=82.23  Aligned_cols=137  Identities=17%  Similarity=0.164  Sum_probs=86.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .++++|||+|||+|..++.++.. + ..+|+++|+++.+++.+ ..|+..+                     .+..++++
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a-~~~~~~~---------------------g~~~~i~~  125 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG-RPLWRQA---------------------EAEHKIDL  125 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHH-HHHHHHT---------------------TCTTTEEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHHHHHC---------------------CCCCeEEE
Confidence            46789999999999999998874 2 45999999999998652 3333321                     12245777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+.   +.                                                  ...   . ....++||+
T Consensus       126 ~~~d~~~~---~~--------------------------------------------------~~~---~-~~~~~~~D~  148 (229)
T 2avd_A          126 RLKPALET---LD--------------------------------------------------ELL---A-AGEAGTFDV  148 (229)
T ss_dssp             EESCHHHH---HH--------------------------------------------------HHH---H-TTCTTCEEE
T ss_pred             EEcCHHHH---HH--------------------------------------------------HHH---h-cCCCCCccE
Confidence            76664221   00                                                  000   0 001258999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccccc----------ccccHHHHHHhhhhcCceeEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG----------FNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfG----------v~gg~~~F~~~vee~G~f~~~~  315 (330)
                      |+..-.   ...+..+++.+.++|+ |+|++++..- .+.|          ....+++|.+.+.++.-+.+.+
T Consensus       149 v~~d~~---~~~~~~~l~~~~~~L~-pgG~lv~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  216 (229)
T 2avd_A          149 AVVDAD---KENCSAYYERCLQLLR-PGGILAVLRV-LWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISL  216 (229)
T ss_dssp             EEECSC---STTHHHHHHHHHHHEE-EEEEEEEECC-SGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             EEECCC---HHHHHHHHHHHHHHcC-CCeEEEEECC-CcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEE
Confidence            987321   4567788888888896 8898887431 1111          0124578888888776565544

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.60  E-value=3.5e-07  Score=81.54  Aligned_cols=39  Identities=15%  Similarity=0.124  Sum_probs=33.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      ++++|||+|||+|..++.++... ..+|+++|+++.+++.
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~   93 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEE   93 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            67899999999999999888752 4599999999998855

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.60  E-value=4.4e-07  Score=82.33  Aligned_cols=38  Identities=32%  Similarity=0.355  Sum_probs=34.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ++++|||+|||+|..+..++..|. +|+++|+++.+++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~   91 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEV   91 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence            788999999999999999888876 89999999998854

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.59  E-value=6e-07  Score=81.98  Aligned_cols=41  Identities=32%  Similarity=0.356  Sum_probs=34.8

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      ..++.+|||+|||+|..++.++.. + ..+|++.|+++++++.
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~  139 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEH  139 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            457889999999999999988864 3 4699999999999865

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.58  E-value=7.4e-08  Score=91.93  Aligned_cols=39  Identities=21%  Similarity=0.383  Sum_probs=34.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~  134 (330)
                      .+.+|||+|||+|..++.++..+. .+|+++|+++.+++.
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~  235 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEA  235 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHH
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            467999999999999999988764 389999999999865

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.57  E-value=1.4e-06  Score=82.32  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=46.0

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  133 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~  133 (330)
                      +-.+++.|.+.|...    .....|++|||+|||||..+..++..|+.+|++.|+++.+|+
T Consensus        66 vsrg~~Kl~~~l~~~----~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~  122 (291)
T 3hp7_A           66 VSRGGLKLEKALAVF----NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLV  122 (291)
T ss_dssp             SSTTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSC
T ss_pred             ccchHHHHHHHHHhc----CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHH
Confidence            334555666666544    245689999999999999999888889999999999999874

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.57  E-value=2.3e-06  Score=81.57  Aligned_cols=130  Identities=19%  Similarity=0.165  Sum_probs=86.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      ++.+|||+|||+|..++.++... ..+++++|+ +.+++.     ...|....                 .+..+|+|..
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  238 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAER-----ARRRFADA-----------------GLADRVTVAE  238 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHH-----HHHHHHhc-----------------CCCCceEEEe
Confidence            57899999999999998887753 348999999 988854     33333211                 1234677776


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+ +                                                                ...+||+|+
T Consensus       239 ~d~~~-~----------------------------------------------------------------~~~~~D~v~  253 (374)
T 1qzz_A          239 GDFFK-P----------------------------------------------------------------LPVTADVVL  253 (374)
T ss_dssp             CCTTS-C----------------------------------------------------------------CSCCEEEEE
T ss_pred             CCCCC-c----------------------------------------------------------------CCCCCCEEE
Confidence            66432 0                                                                012499999


Q ss_pred             EeccccCcccH--HHHHHHHHHHcCCCCcEEEEEec--ccc------------------c-cccccHHHHHHhhhhcCce
Q 020125          255 LTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATK--KNY------------------V-GFNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       255 asD~iY~~~~~--~~L~~~i~~~L~~p~Gv~~lA~k--~~y------------------f-Gv~gg~~~F~~~vee~G~f  311 (330)
                      +..++++-..-  ..+++-+.+.|+ |+|++++..-  ...                  + |..-+..++.+++++.|+-
T Consensus       254 ~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~  332 (374)
T 1qzz_A          254 LSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA  332 (374)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred             EeccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence            99999654433  477888888896 8898887643  110                  0 1112678899999999963


Q ss_pred             eEE
Q 020125          312 GAH  314 (330)
Q Consensus       312 ~~~  314 (330)
                      ..+
T Consensus       333 ~~~  335 (374)
T 1qzz_A          333 LAS  335 (374)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            333

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.57  E-value=5e-07  Score=80.06  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=35.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++.+|||+|||+|..++.++..+ .+|+++|+++.+++.
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~  107 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNY  107 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHH
Confidence            3468899999999999999998887 599999999998854

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.56  E-value=4.1e-06  Score=80.45  Aligned_cols=131  Identities=14%  Similarity=0.131  Sum_probs=88.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      ++.+|||+|||+|...+.++... ..+++++|+ +.+++.     .+.|+...                 .+..+|+|..
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~l~~~v~~~~  258 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEE-----ARELLTGR-----------------GLADRCEILP  258 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHH-----HHHhhhhc-----------------CcCCceEEec
Confidence            56899999999999998887652 348999999 888744     33343311                 1334677777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|... +                                                               .. .+||+|+
T Consensus       259 ~d~~~-~---------------------------------------------------------------~p-~~~D~v~  273 (369)
T 3gwz_A          259 GDFFE-T---------------------------------------------------------------IP-DGADVYL  273 (369)
T ss_dssp             CCTTT-C---------------------------------------------------------------CC-SSCSEEE
T ss_pred             cCCCC-C---------------------------------------------------------------CC-CCceEEE
Confidence            66431 0                                                               01 2799999


Q ss_pred             EeccccCcccH--HHHHHHHHHHcCCCCcEEEEEeccc---------cc---------cccccHHHHHHhhhhcCceeEE
Q 020125          255 LTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATKKN---------YV---------GFNNAARHLRSLVDEEGIFGAH  314 (330)
Q Consensus       255 asD~iY~~~~~--~~L~~~i~~~L~~p~Gv~~lA~k~~---------yf---------Gv~gg~~~F~~~vee~G~f~~~  314 (330)
                      +..++++-..-  ..+++-+.+.|+ |+|+++|.....         ++         |..-...+|.+++++.|+-.++
T Consensus       274 ~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~  352 (369)
T 3gwz_A          274 IKHVLHDWDDDDVVRILRRIATAMK-PDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER  352 (369)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEE
T ss_pred             hhhhhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEE
Confidence            99999765443  368888888886 889988863211         00         1123578899999999964444


Q ss_pred             E
Q 020125          315 L  315 (330)
Q Consensus       315 ~  315 (330)
                      +
T Consensus       353 ~  353 (369)
T 3gwz_A          353 S  353 (369)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.56  E-value=3.2e-07  Score=86.51  Aligned_cols=41  Identities=15%  Similarity=0.121  Sum_probs=32.9

Q ss_pred             CCCccEEEEeccc-c--CcccHHHHHHHHHHHcCCCCcEEEEEec
Q 020125          247 EGGYDVILLTEIP-Y--SVTSLKKLYLLIKKCLRPPYGVVYLATK  288 (330)
Q Consensus       247 ~~~fDvILasD~i-Y--~~~~~~~L~~~i~~~L~~p~Gv~~lA~k  288 (330)
                      .++||+|++..++ |  ++.....+++-+.++|+ |+|++++.+.
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lk-pGG~~i~~~~  170 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA-SGGKVLITTM  170 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcC-CCCEEEEEeC
Confidence            4689999999887 2  44566888999999997 8999988753

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.56  E-value=4.2e-07  Score=79.67  Aligned_cols=41  Identities=22%  Similarity=0.166  Sum_probs=34.8

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~~  134 (330)
                      ..++.+|||+|||+|..++.++..+.  .+|+++|+++.+++.
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~  117 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEK  117 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            45788999999999999988887642  589999999999855

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.56  E-value=1.1e-06  Score=84.36  Aligned_cols=133  Identities=11%  Similarity=0.109  Sum_probs=87.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      ..++|||+|||+|...+.++... ..+|++.|. +.+++.     .+.|....                 .+..+|+|..
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  235 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEM-----MRKQTAGL-----------------SGSERIHGHG  235 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHH-----HHHHHTTC-----------------TTGGGEEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHH-----HHHHHHhc-----------------CcccceEEEE
Confidence            56899999999999998887632 348999999 888743     33333210                 1234677777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+..                                                              ..-.++||+|+
T Consensus       236 ~d~~~~~--------------------------------------------------------------~~~p~~~D~v~  253 (363)
T 3dp7_A          236 ANLLDRD--------------------------------------------------------------VPFPTGFDAVW  253 (363)
T ss_dssp             CCCCSSS--------------------------------------------------------------CCCCCCCSEEE
T ss_pred             ccccccC--------------------------------------------------------------CCCCCCcCEEE
Confidence            7643310                                                              00125899999


Q ss_pred             EeccccC--cccHHHHHHHHHHHcCCCCcEEEEEeccc-----------------cc-------cccccHHHHHHhhhhc
Q 020125          255 LTEIPYS--VTSLKKLYLLIKKCLRPPYGVVYLATKKN-----------------YV-------GFNNAARHLRSLVDEE  308 (330)
Q Consensus       255 asD~iY~--~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~-----------------yf-------Gv~gg~~~F~~~vee~  308 (330)
                      +..++++  .+....+++-+.+.|+ |+|++++.....                 +|       |..-...++.+++++.
T Consensus       254 ~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~A  332 (363)
T 3dp7_A          254 MSQFLDCFSEEEVISILTRVAQSIG-KDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENA  332 (363)
T ss_dssp             EESCSTTSCHHHHHHHHHHHHHHCC-TTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTT
T ss_pred             EechhhhCCHHHHHHHHHHHHHhcC-CCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHc
Confidence            9999974  3445677888888896 889988753100                 00       1112588999999999


Q ss_pred             CceeEE
Q 020125          309 GIFGAH  314 (330)
Q Consensus       309 G~f~~~  314 (330)
                      |+-.++
T Consensus       333 Gf~~v~  338 (363)
T 3dp7_A          333 GLEVEE  338 (363)
T ss_dssp             TEEESC
T ss_pred             CCeEEE
Confidence            964333

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.56  E-value=3e-08  Score=101.23  Aligned_cols=38  Identities=34%  Similarity=0.460  Sum_probs=34.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ++.+|||+|||+|+.+..+++.|| +|+++|.++.+|+.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~  103 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINV  103 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHH
Confidence            567999999999999999999998 89999999987743

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.55  E-value=6.1e-07  Score=81.09  Aligned_cols=47  Identities=15%  Similarity=0.130  Sum_probs=37.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc---CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~---ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ++.+|||+|||+|..++.++..   ...+|+++|+++.+++. .+.|+..+
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~-A~~~~~~~  100 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLEL-AAKNLALL  100 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHH-HHHHHHTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHH-HHHHHHHh
Confidence            5679999999999999988765   23589999999999976 35666544

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.55  E-value=5.9e-06  Score=77.72  Aligned_cols=131  Identities=13%  Similarity=0.056  Sum_probs=88.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      ...+|||+|||+|...+.++.. ...++++.|+ +.+++.     ...+....                 .+..+|+|..
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~  225 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASA-----AHRRFLDT-----------------GLSGRAQVVV  225 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHH-----HHHhhhhc-----------------CcCcCeEEec
Confidence            3579999999999998887753 3348999999 888744     33333211                 1335677777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|... +                                                               .. .+||+|+
T Consensus       226 ~d~~~-~---------------------------------------------------------------~p-~~~D~v~  240 (332)
T 3i53_A          226 GSFFD-P---------------------------------------------------------------LP-AGAGGYV  240 (332)
T ss_dssp             CCTTS-C---------------------------------------------------------------CC-CSCSEEE
T ss_pred             CCCCC-C---------------------------------------------------------------CC-CCCcEEE
Confidence            66431 0                                                               01 2799999


Q ss_pred             EeccccCccc--HHHHHHHHHHHcCCCCcEEEEEeccc-------c---------ccccccHHHHHHhhhhcCceeEEE
Q 020125          255 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN-------Y---------VGFNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       255 asD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA~k~~-------y---------fGv~gg~~~F~~~vee~G~f~~~~  315 (330)
                      +..++++-..  ...+++-+.+.|+ |+|++++.....       .         .|..-+..+|.+++++.|+-.+++
T Consensus       241 ~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  318 (332)
T 3i53_A          241 LSAVLHDWDDLSAVAILRRCAEAAG-SGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAA  318 (332)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHT-TTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             EehhhccCCHHHHHHHHHHHHHhcC-CCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence            9999965544  5778888888896 889988864211       0         112235788999999999644444

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.55  E-value=4.9e-07  Score=79.51  Aligned_cols=39  Identities=15%  Similarity=0.092  Sum_probs=33.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      ++.+|||+|||+|..++.++... ..+|+++|+++.+++.
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~   66 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEK   66 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            67899999999999999988763 4599999999998853

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.53  E-value=1e-06  Score=80.43  Aligned_cols=40  Identities=18%  Similarity=0.250  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      .++++|||+|||+|..++.++.. . ..+|++.|+++.+++.
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~  119 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL  119 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHH
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence            36789999999999999998765 1 3489999999999865

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.52  E-value=7.5e-07  Score=83.14  Aligned_cols=119  Identities=15%  Similarity=0.081  Sum_probs=76.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      ++.+|||+|||+|..+..++..+..+|+++|+++.+++.+ ..+...+..       +.   .     .....++++..+
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a-~~~~~~~~~-------~~---~-----~~~~~~~~~~~~   97 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQC-QQRYEDMKN-------RR---D-----SEYIFSAEFITA   97 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHH-HHHHHHHHS-------SS---C-----C-CCCEEEEEEC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHH-HHHHHHhhh-------cc---c-----ccccceEEEEEe
Confidence            6789999999999988888776667999999999998653 222221110       00   0     001235777777


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |....+...                                             .+            ....+.||+|++
T Consensus        98 D~~~~~~~~---------------------------------------------~~------------~~~~~~fD~V~~  120 (313)
T 3bgv_A           98 DSSKELLID---------------------------------------------KF------------RDPQMCFDICSC  120 (313)
T ss_dssp             CTTTSCSTT---------------------------------------------TC------------SSTTCCEEEEEE
T ss_pred             cccccchhh---------------------------------------------hc------------ccCCCCEEEEEE
Confidence            765532000                                             00            012358999999


Q ss_pred             eccccCc----ccHHHHHHHHHHHcCCCCcEEEEEec
Q 020125          256 TEIPYSV----TSLKKLYLLIKKCLRPPYGVVYLATK  288 (330)
Q Consensus       256 sD~iY~~----~~~~~L~~~i~~~L~~p~Gv~~lA~k  288 (330)
                      +.++...    .....+++-+.++|+ |+|++++...
T Consensus       121 ~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~  156 (313)
T 3bgv_A          121 QFVCHYSFESYEQADMMLRNACERLS-PGGYFIGTTP  156 (313)
T ss_dssp             ETCGGGGGGSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred             ecchhhccCCHHHHHHHHHHHHHHhC-CCcEEEEecC
Confidence            9998543    334577777777886 8999888753

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.52  E-value=1.2e-06  Score=83.15  Aligned_cols=40  Identities=23%  Similarity=0.303  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcccCC-HHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYG-LPGIFACL-KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtG-L~gi~a~~-~ga~~V~~tD~~~~vl~~  134 (330)
                      .-++.+|||+|||+| +.++.+++ .|+ +|++.|+++++++.
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~  161 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAEL  161 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHH
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHH
Confidence            457899999999986 56677666 455 89999999999965

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.52  E-value=1e-06  Score=81.95  Aligned_cols=40  Identities=15%  Similarity=0.091  Sum_probs=35.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      .+++|||+|||+|..++.+++. ++.+|++.|+++.+++.+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~a  115 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYS  115 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHH
Confidence            5789999999999999998876 678999999999999763

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.51  E-value=1.9e-06  Score=81.76  Aligned_cols=132  Identities=16%  Similarity=0.188  Sum_probs=87.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      -++++|||+|||+|..++.++..+ ..+++++|+ +.+++.     ...|....                 .+..+++|.
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~  238 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDT-----ARSYLKDE-----------------GLSDRVDVV  238 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHH-----HHHHHHhc-----------------CCCCceEEE
Confidence            357899999999999998887654 348999999 888754     33343321                 123467777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|+.+.                                                                 ...+||+|
T Consensus       239 ~~d~~~~-----------------------------------------------------------------~~~~~D~v  253 (360)
T 1tw3_A          239 EGDFFEP-----------------------------------------------------------------LPRKADAI  253 (360)
T ss_dssp             ECCTTSC-----------------------------------------------------------------CSSCEEEE
T ss_pred             eCCCCCC-----------------------------------------------------------------CCCCccEE
Confidence            7765320                                                                 01249999


Q ss_pred             EEeccccCccc--HHHHHHHHHHHcCCCCcEEEEEecc-cc------------------c-cccccHHHHHHhhhhcCce
Q 020125          254 LLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKK-NY------------------V-GFNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       254 LasD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA~k~-~y------------------f-Gv~gg~~~F~~~vee~G~f  311 (330)
                      +++.++++-..  ...+++-+.+.|+ |+|++++.... ..                  + |..-...++.+++++.|+-
T Consensus       254 ~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  332 (360)
T 1tw3_A          254 ILSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV  332 (360)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred             EEcccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCe
Confidence            99999965433  3567788888886 88998876432 00                  0 1112678899999999964


Q ss_pred             eEEE
Q 020125          312 GAHL  315 (330)
Q Consensus       312 ~~~~  315 (330)
                      ..++
T Consensus       333 ~~~~  336 (360)
T 1tw3_A          333 VEEV  336 (360)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            3333

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.51  E-value=4.4e-07  Score=85.49  Aligned_cols=41  Identities=24%  Similarity=0.218  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~~  134 (330)
                      .-++.+|||+|||+|..++.++..+.  .+|+++|+++++++.
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~  115 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI  115 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence            34788999999999999998887643  369999999999854

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.51  E-value=1.5e-06  Score=82.23  Aligned_cols=132  Identities=16%  Similarity=0.179  Sum_probs=89.4

Q ss_pred             CCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           97 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      +++|||+|||+|..++.++.. ...++++.|+ +.+++.     .+.|....                 .+..+++|..+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~~  236 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDA-----ARKTIHAH-----------------DLGGRVEFFEK  236 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHH-----HHHHHHHT-----------------TCGGGEEEEEC
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHH-----HHHHHHhc-----------------CCCCceEEEeC
Confidence            789999999999999887764 2358999999 777743     33333211                 12346787777


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |..+.+.                                                              ....+||+|++
T Consensus       237 d~~~~~~--------------------------------------------------------------~~~~~~D~v~~  254 (352)
T 3mcz_A          237 NLLDARN--------------------------------------------------------------FEGGAADVVML  254 (352)
T ss_dssp             CTTCGGG--------------------------------------------------------------GTTCCEEEEEE
T ss_pred             CcccCcc--------------------------------------------------------------cCCCCccEEEE
Confidence            7544210                                                              01246999999


Q ss_pred             eccccCcc--cHHHHHHHHHHHcCCCCcEEEEEecc-------c-------------c-ccccccHHHHHHhhhhcCcee
Q 020125          256 TEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKK-------N-------------Y-VGFNNAARHLRSLVDEEGIFG  312 (330)
Q Consensus       256 sD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~k~-------~-------------y-fGv~gg~~~F~~~vee~G~f~  312 (330)
                      ..++++-.  ....+++-+.+.|+ |+|++++....       .             . -|..-+..+|.+++++.|+-.
T Consensus       255 ~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  333 (352)
T 3mcz_A          255 NDCLHYFDAREAREVIGHAAGLVK-PGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAV  333 (352)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred             ecccccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCce
Confidence            99997543  45788888888896 88998886310       0             0 122335788999999999744


Q ss_pred             EE
Q 020125          313 AH  314 (330)
Q Consensus       313 ~~  314 (330)
                      ++
T Consensus       334 ~~  335 (352)
T 3mcz_A          334 GE  335 (352)
T ss_dssp             EE
T ss_pred             ee
Confidence            33

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.51  E-value=1.7e-06  Score=78.17  Aligned_cols=139  Identities=17%  Similarity=0.211  Sum_probs=87.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .++++|||+|||+|..++.++.. + ..+|+++|+++++++.+ +.|+..+                     .+..++++
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a-~~~~~~~---------------------g~~~~i~~  126 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIG-LPFIRKA---------------------GVEHKINF  126 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHH-HHHHHHT---------------------TCGGGEEE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHHHHHc---------------------CCCCcEEE
Confidence            36789999999999999998764 2 35999999999998652 3333321                     12346777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+.   ++.                                                  .   .+.....++||+
T Consensus       127 ~~gda~~~---l~~--------------------------------------------------l---~~~~~~~~~fD~  150 (237)
T 3c3y_A          127 IESDAMLA---LDN--------------------------------------------------L---LQGQESEGSYDF  150 (237)
T ss_dssp             EESCHHHH---HHH--------------------------------------------------H---HHSTTCTTCEEE
T ss_pred             EEcCHHHH---HHH--------------------------------------------------H---HhccCCCCCcCE
Confidence            77775331   000                                                  0   000001368999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc---------------cccHHHHHHhhhhcCceeEEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF---------------NNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv---------------~gg~~~F~~~vee~G~f~~~~~  316 (330)
                      |+..   .....+..+++.+.++|+ |+|++++-.- .+.|.               ...+++|.+.+.++--|...++
T Consensus       151 I~~d---~~~~~~~~~l~~~~~~L~-pGG~lv~d~~-~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~l  224 (237)
T 3c3y_A          151 GFVD---ADKPNYIKYHERLMKLVK-VGGIVAYDNT-LWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHL  224 (237)
T ss_dssp             EEEC---SCGGGHHHHHHHHHHHEE-EEEEEEEECT-TGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEEC---CchHHHHHHHHHHHHhcC-CCeEEEEecC-CcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9963   235667888888888996 8898876431 11110               1134488888887765555443

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.49  E-value=1.7e-06  Score=92.02  Aligned_cols=114  Identities=13%  Similarity=0.105  Sum_probs=79.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .++++|||+|||+|..++.++..+.  .+|++.|+++.+++.+ +.++....  +  ..           +..+ .+++|
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~A-ReRLa~~l--n--Ak-----------r~gl-~nVef  782 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARA-AKMLHVKL--N--KE-----------ACNV-KSATL  782 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHH-HHHHHHHT--T--TT-----------CSSC-SEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHH-HHHhhhcc--c--hh-----------hcCC-CceEE
Confidence            3789999999999999999998873  5999999999999663 23332221  0  00           0011 36788


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|....+                                                               ...++||+
T Consensus       783 iqGDa~dLp---------------------------------------------------------------~~d~sFDl  799 (950)
T 3htx_A          783 YDGSILEFD---------------------------------------------------------------SRLHDVDI  799 (950)
T ss_dssp             EESCTTSCC---------------------------------------------------------------TTSCSCCE
T ss_pred             EECchHhCC---------------------------------------------------------------cccCCeeE
Confidence            777754421                                                               12368999


Q ss_pred             EEEeccccCccc--HHHHHHHHHHHcCCCCcEEEEEeccc
Q 020125          253 ILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN  290 (330)
Q Consensus       253 ILasD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA~k~~  290 (330)
                      |++.+++..-..  ...+++.+.+.|+ |+ .+++.+..+
T Consensus       800 VV~~eVLeHL~dp~l~~~L~eI~RvLK-PG-~LIISTPN~  837 (950)
T 3htx_A          800 GTCLEVIEHMEEDQACEFGEKVLSLFH-PK-LLIVSTPNY  837 (950)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTTC-CS-EEEEEECBG
T ss_pred             EEEeCchhhCChHHHHHHHHHHHHHcC-CC-EEEEEecCc
Confidence            999999987664  3357788888897 65 777776443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.49  E-value=1.1e-06  Score=82.46  Aligned_cols=39  Identities=15%  Similarity=0.070  Sum_probs=34.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      .+++|||+|||+|..++.+++. +..+|++.|+++.+++.
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~  129 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEA  129 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence            4689999999999999998876 56799999999999965

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.48  E-value=1.4e-06  Score=86.58  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=36.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHh
Q 020125           94 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~  135 (330)
                      .-.+.+|||+|||+|..++.++. .|+.+|++.|+++.+++.+
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A  282 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT  282 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHH
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            34788999999999999999887 4777899999999988653

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.47  E-value=1.4e-07  Score=91.72  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=49.5

Q ss_pred             CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecc-------cccc-------ccccHHHHHHhhhhcCc
Q 020125          247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------NYVG-------FNNAARHLRSLVDEEGI  310 (330)
Q Consensus       247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~-------~yfG-------v~gg~~~F~~~vee~G~  310 (330)
                      .++||+|++..++++......+++-+.++|+ |+|++++....       ..|.       .--+...+.+++++.|+
T Consensus       169 ~~~fD~I~~~~vl~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf  245 (416)
T 4e2x_A          169 EGPANVIYAANTLCHIPYVQSVLEGVDALLA-PDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGF  245 (416)
T ss_dssp             HCCEEEEEEESCGGGCTTHHHHHHHHHHHEE-EEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTE
T ss_pred             CCCEEEEEECChHHhcCCHHHHHHHHHHHcC-CCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCC
Confidence            3689999999999999999999999999997 89999987431       0000       01156789999999996

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.47  E-value=7.9e-07  Score=82.76  Aligned_cols=40  Identities=20%  Similarity=0.200  Sum_probs=35.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~  135 (330)
                      .+++|||+|||+|..++.+++.+..+|++.|+++.+++.+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~a  114 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVS  114 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence            5789999999999999998877778999999999998663

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.47  E-value=2.2e-06  Score=81.08  Aligned_cols=47  Identities=23%  Similarity=0.240  Sum_probs=38.5

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCChHHHHHhhHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      ..+|.+|||+|||+|..++.++.. |+ .+|++.|+++.+++.+ ..|+.
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a-~~~~~  151 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLA-KKNYK  151 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHH-HHHHH
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHH-HHHHH
Confidence            457899999999999999998875 65 6999999999998653 34444

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.46  E-value=2.1e-06  Score=77.14  Aligned_cols=136  Identities=14%  Similarity=0.146  Sum_probs=84.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ++++|||+|||+|..++.++.. + ..+|+++|+++++++.+ ..|+..+.                     +..++++.
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a-~~~~~~~g---------------------~~~~i~~~  129 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIA-KKYWQKAG---------------------VAEKISLR  129 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHH-HHHHHHHT---------------------CGGGEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHHHHHcC---------------------CCCcEEEE
Confidence            5789999999999999998864 2 34899999999998652 34443221                     22357776


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.   ++.                                            +.          .....++||+|
T Consensus       130 ~~d~~~~---l~~--------------------------------------------l~----------~~~~~~~fD~V  152 (232)
T 3cbg_A          130 LGPALAT---LEQ--------------------------------------------LT----------QGKPLPEFDLI  152 (232)
T ss_dssp             ESCHHHH---HHH--------------------------------------------HH----------TSSSCCCEEEE
T ss_pred             EcCHHHH---HHH--------------------------------------------HH----------hcCCCCCcCEE
Confidence            6664321   000                                            00          00012689999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc----------cccHHHHHHhhhhcCceeEEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv----------~gg~~~F~~~vee~G~f~~~~  315 (330)
                      +..-   ....+..+++.+.++|+ |+|++++..-.. .|.          ...+++|.+.+.++--+...+
T Consensus       153 ~~d~---~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  219 (232)
T 3cbg_A          153 FIDA---DKRNYPRYYEIGLNLLR-RGGLMVIDNVLW-HGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISV  219 (232)
T ss_dssp             EECS---CGGGHHHHHHHHHHTEE-EEEEEEEECTTG-GGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             EECC---CHHHHHHHHHHHHHHcC-CCeEEEEeCCCc-CCccCCcccCChHHHHHHHHHHHHhhCCCeEEEE
Confidence            8542   24567788888888886 889888753211 110          124678888887765455444

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.46  E-value=2.6e-07  Score=82.83  Aligned_cols=44  Identities=14%  Similarity=0.275  Sum_probs=36.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      ...+|||||||+|..++..+..  ++ +|+++|+|+.+++. +..|..
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~lei-ar~~~~   94 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAF-LSSIIG   94 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHH-HHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHH-HHHHHH
Confidence            4679999999999999998765  66 99999999999976 344444

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.45  E-value=7.2e-07  Score=84.92  Aligned_cols=39  Identities=18%  Similarity=0.167  Sum_probs=34.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      .+++|||+|||+|..++.+++. +..+|+++|+++.+++.
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~  155 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEV  155 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            5689999999999999998876 46799999999999865

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.45  E-value=1.5e-06  Score=83.38  Aligned_cols=45  Identities=11%  Similarity=0.047  Sum_probs=36.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      .+++|||+|||+|..++.+++. +..+|+++|+++.+++.+ +.|+.
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~A-r~~~~  165 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVS-KQFFP  165 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHH-HHHCH
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHH-HHHHH
Confidence            5689999999999999998875 356999999999999763 34443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.44  E-value=1.1e-06  Score=81.16  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~~vl~~  134 (330)
                      -+|.+|||+|||+|..++.++.  .+..+|++.|+++..++.
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~  123 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKA  123 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHH
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHH
Confidence            3688999999999999987775  455799999999999864

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.44  E-value=2.2e-06  Score=77.75  Aligned_cols=39  Identities=10%  Similarity=0.066  Sum_probs=33.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      ++.+|||+|||+|...+.++... ..+|++.|+++.+++.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~   85 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDY   85 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHH
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHH
Confidence            46689999999999999987653 4589999999999865

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.43  E-value=9.4e-07  Score=79.11  Aligned_cols=53  Identities=15%  Similarity=0.097  Sum_probs=40.0

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++..+.+..    ...++.+|||+|||+|..++.++..+..+|+++|+++.+++.
T Consensus        77 ~~~~~~~~~~l----~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~  129 (235)
T 1jg1_A           77 PHMVAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEF  129 (235)
T ss_dssp             HHHHHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHH
Confidence            34445554443    234688999999999999988887643689999999998855

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.43  E-value=2.2e-06  Score=73.65  Aligned_cols=37  Identities=32%  Similarity=0.164  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-CC---------CeEEEEeCChH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-GA---------GTVHFQDLSAE  130 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-ga---------~~V~~tD~~~~  130 (330)
                      .-++.+|||+|||+|..++.++.. |+         .+|++.|+++.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            346889999999999999998875 54         68999999983

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.43  E-value=2.3e-06  Score=84.70  Aligned_cols=47  Identities=28%  Similarity=0.365  Sum_probs=38.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      -++++|||+|||+|..++.++..+ .+|++.|+++.+++.. ..|+..|
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A-~~n~~~n  335 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMA-RRNVEIN  335 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHH-HHHHHHH
T ss_pred             CCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHH-HHHHHHc
Confidence            367899999999999999998875 5999999999999653 4454444

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.43  E-value=3e-06  Score=76.92  Aligned_cols=57  Identities=21%  Similarity=0.223  Sum_probs=46.1

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  133 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~  133 (330)
                      +-.++..|.+.|...    ....++++|||+|||+|..+..++..|+.+|++.|+++.+++
T Consensus        18 vsrg~~kL~~~L~~~----~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~   74 (232)
T 3opn_A           18 VSRGGLKLEKALKEF----HLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLA   74 (232)
T ss_dssp             SSTTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCC
T ss_pred             cCCcHHHHHHHHHHc----CCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence            344566677776654    245678999999999999999998889889999999999874

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.42  E-value=6.8e-06  Score=81.09  Aligned_cols=75  Identities=24%  Similarity=0.198  Sum_probs=53.9

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 020125           77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  156 (330)
Q Consensus        77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~  156 (330)
                      ...|.+++.+..    ....+.+|||+|||+|..++.++.. +.+|+++|+++++++.. ..|+..|.            
T Consensus       271 ~e~l~~~~~~~l----~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A-~~n~~~~~------------  332 (433)
T 1uwv_A          271 NQKMVARALEWL----DVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKG-QQNARLNG------------  332 (433)
T ss_dssp             HHHHHHHHHHHH----TCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHH-HHHHHHTT------------
T ss_pred             HHHHHHHHHHhh----cCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHH-HHHHHHcC------------
Confidence            455666665543    2346789999999999999999987 45999999999998652 34443331            


Q ss_pred             CCCCCcccCCCCceeeeecccCC
Q 020125          157 SSLTPSRQTLAPSVHFYAGDWEE  179 (330)
Q Consensus       157 s~~~~~~~~l~~~v~~~~gdW~~  179 (330)
                               + .+++|..+|+.+
T Consensus       333 ---------~-~~v~f~~~d~~~  345 (433)
T 1uwv_A          333 ---------L-QNVTFYHENLEE  345 (433)
T ss_dssp             ---------C-CSEEEEECCTTS
T ss_pred             ---------C-CceEEEECCHHH
Confidence                     2 268888888765

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.42  E-value=7.7e-07  Score=78.73  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=34.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCC------CeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGA------GTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga------~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|..++.++....      .+|+++|+++.+++.
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~  124 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNF  124 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHH
Confidence            4688999999999999988887542      489999999999865

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.41  E-value=5e-07  Score=88.18  Aligned_cols=47  Identities=30%  Similarity=0.357  Sum_probs=40.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ++++|||+|||+|..|+.+++. ++.+|++.|+++++++. .+.|+.+|
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~-a~~N~~~n   94 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYEL-MKRNVMLN   94 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHH-HHHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHH-HHHHHHHh
Confidence            6889999999999999998875 77789999999999966 45666666

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.41  E-value=1.7e-06  Score=81.85  Aligned_cols=40  Identities=20%  Similarity=0.159  Sum_probs=34.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      .+++|||+|||+|..+..+++. +..+|++.|+++.+++.+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a  117 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVA  117 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence            5689999999999999988876 467999999999998663

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.40  E-value=3.6e-06  Score=81.33  Aligned_cols=53  Identities=19%  Similarity=0.118  Sum_probs=40.4

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~  134 (330)
                      ..+++++.+...    ..++.+|||+|||+|...+.++..  ...+|++.|+++.+++.
T Consensus        25 ~~l~~~~~~~~~----~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~   79 (421)
T 2ih2_A           25 PEVVDFMVSLAE----APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL   79 (421)
T ss_dssp             HHHHHHHHHHCC----CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC
T ss_pred             HHHHHHHHHhhc----cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHh
Confidence            456777776541    235679999999999999988864  34699999999988743

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.40  E-value=2.3e-06  Score=75.20  Aligned_cols=50  Identities=16%  Similarity=0.105  Sum_probs=38.8

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChH
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAE  130 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~  130 (330)
                      ++.-|.+.+.+.    ...-++.+|||||||+|..+..++..+ .+|++.|+++.
T Consensus         9 a~~KL~ei~~~~----~~~~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~   58 (191)
T 3dou_A            9 AAFKLEFLLDRY----RVVRKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEM   58 (191)
T ss_dssp             HHHHHHHHHHHH----CCSCTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCC
T ss_pred             HHHHHHHHHHHc----CCCCCCCEEEEEeecCCHHHHHHHHcC-CcEEEEecccc
Confidence            456666666544    133468999999999999999998874 58999999873

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.39  E-value=1.6e-06  Score=78.50  Aligned_cols=39  Identities=15%  Similarity=-0.066  Sum_probs=32.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-----CCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-----GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-----ga~~V~~tD~~~~vl~~  134 (330)
                      ++++|||+|||+|..++.++..     ...+|++.|+++++++.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~  124 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI  124 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHH
Confidence            5689999999999999988765     23589999999998743

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.39  E-value=3.8e-06  Score=79.43  Aligned_cols=47  Identities=17%  Similarity=0.167  Sum_probs=36.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLA  142 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~  142 (330)
                      -+|.+|||+|||+|..++.++..  +..+|++.|+++.+++. ...|+.+
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~-a~~~~~~  165 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRE-TRLNLSR  165 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHH-HHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHH-HHHHHHH
Confidence            36889999999999999887754  33589999999999865 2444443

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.39  E-value=2.7e-06  Score=79.32  Aligned_cols=39  Identities=18%  Similarity=0.167  Sum_probs=34.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      ++++|||+|||+|..+..+++. +..+|++.|+++.+++.
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~  117 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEV  117 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHH
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            5789999999999999988876 35799999999999865

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.38  E-value=1.1e-05  Score=72.79  Aligned_cols=45  Identities=9%  Similarity=-0.026  Sum_probs=35.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      ++++|||+|||+|..++.++.. ...+|+++|+++.+++.+ ..|+.
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a-~~~~~  110 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYA-KKNVE  110 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHH-HHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHH-HHHHH
Confidence            5789999999999988877654 235899999999999653 34443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.37  E-value=1.1e-06  Score=77.67  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|..++.++.. |. .+|+++|+++.+++.
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~  117 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDD  117 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence            46889999999999999887764 43 489999999999865

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.36  E-value=1.4e-06  Score=79.12  Aligned_cols=40  Identities=23%  Similarity=0.188  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|..+..++.. +..+|++.|+++.+++.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~  124 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA  124 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence            36789999999999999888775 23489999999998854

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.35  E-value=4e-06  Score=83.18  Aligned_cols=61  Identities=15%  Similarity=0.060  Sum_probs=44.2

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHH
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      ....+.+.+.+..    ..-+|.+|||||||+|-+.+.++. .|+.+|++.|+++.+++.. ..|+.
T Consensus       157 t~~~~i~~il~~l----~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelA-r~n~e  218 (438)
T 3uwp_A          157 TSFDLVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYA-ETMDR  218 (438)
T ss_dssp             THHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHH-HHHHH
T ss_pred             CCHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHH-HHHHH
Confidence            3344444444443    245788999999999999998774 6777899999999998663 44443

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.34  E-value=2e-06  Score=76.42  Aligned_cols=48  Identities=21%  Similarity=0.202  Sum_probs=37.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHH-cCC------CeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACL-KGA------GTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~-~ga------~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      -++.+|||+|||+|..++.++. .+.      .+|+++|+++++++.. ..|+..+
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a-~~~~~~~  137 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS-KANLNTD  137 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHH-HHHHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHH-HHHHHhc
Confidence            4678999999999999988776 342      4899999999998663 4555443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.33  E-value=7.2e-07  Score=87.60  Aligned_cols=47  Identities=21%  Similarity=0.176  Sum_probs=39.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +|++|||++||+|..||.++.  .||++|++.|+++..++. +..|+.+|
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~-~~~N~~~N  100 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEI-MKENFKLN  100 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHH-HHHHHHHT
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHh
Confidence            578999999999999999887  477899999999999865 45666655

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.33  E-value=1.8e-05  Score=76.14  Aligned_cols=135  Identities=18%  Similarity=0.130  Sum_probs=88.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .+.+|||+|||+|...+.++.. ...++++.|+ +.+++..                 +           . .++|+|..
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-----------------~-----------~-~~~v~~~~  252 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDA-----------------P-----------A-FSGVEHLG  252 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-----------------C-----------C-CTTEEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhh-----------------h-----------h-cCCCEEEe
Confidence            4579999999999999888764 2348999999 7776321                 0           0 13577766


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+ +                                                               .. .. |+|+
T Consensus       253 ~d~~~-~---------------------------------------------------------------~p-~~-D~v~  266 (368)
T 3reo_A          253 GDMFD-G---------------------------------------------------------------VP-KG-DAIF  266 (368)
T ss_dssp             CCTTT-C---------------------------------------------------------------CC-CC-SEEE
T ss_pred             cCCCC-C---------------------------------------------------------------CC-CC-CEEE
Confidence            66332 0                                                               01 12 9999


Q ss_pred             EeccccC--cccHHHHHHHHHHHcCCCCcEEEEEeccc------------------------cccccccHHHHHHhhhhc
Q 020125          255 LTEIPYS--VTSLKKLYLLIKKCLRPPYGVVYLATKKN------------------------YVGFNNAARHLRSLVDEE  308 (330)
Q Consensus       255 asD~iY~--~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~------------------------yfGv~gg~~~F~~~vee~  308 (330)
                      +..++++  .+....+++-+.+.|+ |+|+++|.....                        ..|...+..+|.+++++.
T Consensus       267 ~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~A  345 (368)
T 3reo_A          267 IKWICHDWSDEHCLKLLKNCYAALP-DHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMAS  345 (368)
T ss_dssp             EESCGGGBCHHHHHHHHHHHHHHSC-TTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHT
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHC
Confidence            9999984  3445577788888896 889988863110                        012223578899999999


Q ss_pred             CceeEEEEeecCCcceeee
Q 020125          309 GIFGAHLIKEMTDRDIWKF  327 (330)
Q Consensus       309 G~f~~~~~~e~~d~~i~~~  327 (330)
                      |+-.+++........|..+
T Consensus       346 GF~~v~~~~~~~~~~vie~  364 (368)
T 3reo_A          346 GFRGFKVASCAFNTYVMEF  364 (368)
T ss_dssp             TCCEEEEEEEETTEEEEEE
T ss_pred             CCeeeEEEEeCCCcEEEEE
Confidence            9866666554444444433

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.32  E-value=1.8e-06  Score=79.77  Aligned_cols=63  Identities=13%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc-------c------ccc-----cccHHHHHHhhhhc
Q 020125          247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-------Y------VGF-----NNAARHLRSLVDEE  308 (330)
Q Consensus       247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~-------y------fGv-----~gg~~~F~~~vee~  308 (330)
                      .++||+|+++.+++.....+..++-+.++|+ |+|+++++....       |      ++.     .-...++.+++++.
T Consensus       133 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  211 (292)
T 2aot_A          133 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL  211 (292)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHH
T ss_pred             CCceeEEEEeeeeeecCCHHHHHHHHHHHcC-CCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHC
Confidence            4689999999999999999999999999997 899988763211       0      110     12467788899999


Q ss_pred             Cc
Q 020125          309 GI  310 (330)
Q Consensus       309 G~  310 (330)
                      |+
T Consensus       212 Gf  213 (292)
T 2aot_A          212 GL  213 (292)
T ss_dssp             TC
T ss_pred             CC
Confidence            96

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.31  E-value=4.8e-06  Score=78.59  Aligned_cols=40  Identities=15%  Similarity=0.086  Sum_probs=34.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      ..+++|||+|||+|..++.+++. +..+|++.|+++.+++.
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~  134 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQV  134 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            35789999999999999998876 35799999999999966

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.26  E-value=3.4e-05  Score=73.23  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=48.9

Q ss_pred             CccEEEEeccccCcccH--HHHHHHHHHHcCCCCcEEEEEeccc-------------------cccccccHHHHHHhhhh
Q 020125          249 GYDVILLTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATKKN-------------------YVGFNNAARHLRSLVDE  307 (330)
Q Consensus       249 ~fDvILasD~iY~~~~~--~~L~~~i~~~L~~p~Gv~~lA~k~~-------------------yfGv~gg~~~F~~~vee  307 (330)
                      +||+|++..++++-..-  ..+++-+.+.|+ |+|++++.....                   ..|......+|.+++++
T Consensus       247 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk-pgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~  325 (348)
T 3lst_A          247 HADVHVLKRILHNWGDEDSVRILTNCRRVMP-AHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTA  325 (348)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHTCC-TTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHH
T ss_pred             CCcEEEEehhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHH
Confidence            89999999999766544  578888888896 889998863210                   01112368899999999


Q ss_pred             cCceeEEEEe
Q 020125          308 EGIFGAHLIK  317 (330)
Q Consensus       308 ~G~f~~~~~~  317 (330)
                      .|+-.+++..
T Consensus       326 aGf~~~~~~~  335 (348)
T 3lst_A          326 AGLRLDRVVG  335 (348)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCCceEEEEE
Confidence            9975555544

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.25  E-value=1.1e-05  Score=69.73  Aligned_cols=50  Identities=12%  Similarity=0.074  Sum_probs=36.6

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C--CCeEEEEeCCh
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G--AGTVHFQDLSA  129 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-g--a~~V~~tD~~~  129 (330)
                      ++..|.+.+...    ...-++.+|||+|||+|..++.++.. +  ..+|++.|+++
T Consensus         6 ~~~kl~~~~~~~----~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A            6 AAYKLIELDNKY----LFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             THHHHHHHHHHH----CCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             HHHHHHHHHHHc----CCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            345566655433    12346789999999999999988764 3  35899999988

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.25  E-value=1.1e-05  Score=73.77  Aligned_cols=64  Identities=17%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             CcccchhHH-HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           70 FLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        70 g~k~W~ss~-~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      .++.|+--. -||..|..... ....-+|.+|||+|||+|.....++.. | ..+|++.|+++++++.
T Consensus        51 e~r~w~p~rsklaa~i~~gl~-~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~  117 (233)
T 4df3_A           51 EYREWNAYRSKLAAALLKGLI-ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRD  117 (233)
T ss_dssp             EEEECCTTTCHHHHHHHTTCS-CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHH
T ss_pred             eeeeECCCchHHHHHHHhchh-hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Confidence            477898653 35666654331 223568999999999999988888753 3 3589999999999854

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.21  E-value=3e-06  Score=79.18  Aligned_cols=42  Identities=19%  Similarity=0.427  Sum_probs=32.3

Q ss_pred             CCCccEEEEeccc-c-CcccHHHHHHHHHHHcCCCCcEEEEEecc
Q 020125          247 EGGYDVILLTEIP-Y-SVTSLKKLYLLIKKCLRPPYGVVYLATKK  289 (330)
Q Consensus       247 ~~~fDvILasD~i-Y-~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~  289 (330)
                      .++||+|++..++ | +++....+++.+.+.|+ |+|.+++...-
T Consensus       211 ~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~-pgG~L~lg~sE  254 (274)
T 1af7_A          211 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFAGHSE  254 (274)
T ss_dssp             CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEECTTC
T ss_pred             CCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC-CCcEEEEEecc
Confidence            3589999998875 4 34456788888999997 89999886443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.21  E-value=6.1e-06  Score=79.61  Aligned_cols=59  Identities=19%  Similarity=0.205  Sum_probs=43.7

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ..|..++.+..     ...+++|||+|||+|..++.++. ++.+|++.|+++.+++.. ..|+..|
T Consensus       200 ~~l~~~~~~~~-----~~~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a-~~n~~~n  258 (369)
T 3bt7_A          200 IQMLEWALDVT-----KGSKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAA-QYNIAAN  258 (369)
T ss_dssp             HHHHHHHHHHT-----TTCCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHH-HHHHHHT
T ss_pred             HHHHHHHHHHh-----hcCCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHH-HHHHHHc
Confidence            55666665542     23478999999999999998887 466999999999998652 3444433

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.21  E-value=2.6e-05  Score=71.22  Aligned_cols=55  Identities=16%  Similarity=0.160  Sum_probs=39.6

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      .++..|..... ....-+|.+|||+|||+|..+..++.. | ..+|++.|+++.+++.
T Consensus        60 kla~~ll~~l~-~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~  116 (232)
T 3id6_C           60 KLAGAILKGLK-TNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE  116 (232)
T ss_dssp             HHHHHHHTTCS-CCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH
T ss_pred             HHHHHHHhhhh-hcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH
Confidence            45666655431 122457899999999999988777653 3 4589999999998744

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.20  E-value=3.8e-05  Score=72.93  Aligned_cols=68  Identities=18%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             CccEEEEeccccCcccHH--HHHHHHHHHcCCC---CcEEEEEeccc--------------c-------c-cccccHHHH
Q 020125          249 GYDVILLTEIPYSVTSLK--KLYLLIKKCLRPP---YGVVYLATKKN--------------Y-------V-GFNNAARHL  301 (330)
Q Consensus       249 ~fDvILasD~iY~~~~~~--~L~~~i~~~L~~p---~Gv~~lA~k~~--------------y-------f-Gv~gg~~~F  301 (330)
                      .||+|++..++++-...+  .+++-+.+.|+ |   +|++++.....              .       + |..-+..+|
T Consensus       246 ~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~  324 (352)
T 1fp2_A          246 NADAVLLKYILHNWTDKDCLRILKKCKEAVT-NDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEW  324 (352)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHHS-GGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHH
T ss_pred             CccEEEeehhhccCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHH
Confidence            399999999998765544  78888888897 6   89988763110              0       0 122357889


Q ss_pred             HHhhhhcCceeEEEEe
Q 020125          302 RSLVDEEGIFGAHLIK  317 (330)
Q Consensus       302 ~~~vee~G~f~~~~~~  317 (330)
                      .+++++.|+-..++..
T Consensus       325 ~~ll~~aGf~~~~~~~  340 (352)
T 1fp2_A          325 KKLFIEAGFQHYKISP  340 (352)
T ss_dssp             HHHHHHTTCCEEEEEE
T ss_pred             HHHHHHCCCCeeEEEe
Confidence            9999999974444433

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.19  E-value=5.2e-05  Score=72.82  Aligned_cols=129  Identities=19%  Similarity=0.106  Sum_probs=86.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      .+.+|||+|||+|...+.++.. ...++++.|+ +.+++..                 +           . .++|+|..
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-----------------~-----------~-~~~v~~~~  250 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEA-----------------P-----------Q-FPGVTHVG  250 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-----------------C-----------C-CTTEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhh-----------------h-----------h-cCCeEEEe
Confidence            4579999999999999888763 3348999999 7766321                 0           0 13577777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+ +                                                               ... . |+|+
T Consensus       251 ~D~~~-~---------------------------------------------------------------~p~-~-D~v~  264 (364)
T 3p9c_A          251 GDMFK-E---------------------------------------------------------------VPS-G-DTIL  264 (364)
T ss_dssp             CCTTT-C---------------------------------------------------------------CCC-C-SEEE
T ss_pred             CCcCC-C---------------------------------------------------------------CCC-C-CEEE
Confidence            66332 1                                                               011 2 9999


Q ss_pred             EeccccC--cccHHHHHHHHHHHcCCCCcEEEEEeccc------------------------cccccccHHHHHHhhhhc
Q 020125          255 LTEIPYS--VTSLKKLYLLIKKCLRPPYGVVYLATKKN------------------------YVGFNNAARHLRSLVDEE  308 (330)
Q Consensus       255 asD~iY~--~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~------------------------yfGv~gg~~~F~~~vee~  308 (330)
                      ++.++++  .+....+++-+.+.|+ |+|+++|..-..                        .-|...+..+|.+++++.
T Consensus       265 ~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~A  343 (364)
T 3p9c_A          265 MKWILHDWSDQHCATLLKNCYDALP-AHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGA  343 (364)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHT
T ss_pred             ehHHhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHC
Confidence            9999984  3556677888888896 889988853110                        011223578899999999


Q ss_pred             CceeEEEEeecCC
Q 020125          309 GIFGAHLIKEMTD  321 (330)
Q Consensus       309 G~f~~~~~~e~~d  321 (330)
                      |+-.+++..-...
T Consensus       344 GF~~v~~~~~~~~  356 (364)
T 3p9c_A          344 GFTGVKSTYIYAN  356 (364)
T ss_dssp             TCCEEEEEEEETT
T ss_pred             CCceEEEEEcCCc
Confidence            9766665444333

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.16  E-value=6.7e-06  Score=78.25  Aligned_cols=45  Identities=11%  Similarity=-0.007  Sum_probs=35.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCC------CeEEEEeCChHHHHHhhHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGA------GTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga------~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      ++.+|||+|||+|...+.++....      .+|+++|+++.+++.+ ..|+.
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a-~~n~~  180 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLA-LVGAD  180 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHH-HHHHH
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHH-HHHHH
Confidence            567999999999999988875431      5899999999998663 34443

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.14  E-value=1.3e-05  Score=76.18  Aligned_cols=39  Identities=21%  Similarity=0.101  Sum_probs=34.0

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      .+++|||+|||+|..++.+++. +..+|++.|+++.+++.
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~  147 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDV  147 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            4689999999999999998875 35699999999999865

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.14  E-value=4.6e-06  Score=86.55  Aligned_cols=63  Identities=10%  Similarity=0.041  Sum_probs=42.8

Q ss_pred             HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCC-----eEEEEeCChHHHHHhhHHHHHHHH
Q 020125           80 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAG-----TVHFQDLSAETIRCTTVPNVLANL  144 (330)
Q Consensus        80 La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~-----~V~~tD~~~~vl~~~t~pNv~~N~  144 (330)
                      +.+.|.+........+++++||++|||+|+++.++++++++     +|++.+.|+.+.  +++.++..|.
T Consensus       341 I~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~--~a~~~v~~N~  408 (637)
T 4gqb_A          341 IYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV--VTLENWQFEE  408 (637)
T ss_dssp             HHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH--HHHHHHHHHT
T ss_pred             HHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH--HHHHHHHhcc
Confidence            33444433222234567889999999999997776655443     789999998654  3567777774

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.13  E-value=8.6e-06  Score=75.92  Aligned_cols=50  Identities=18%  Similarity=0.106  Sum_probs=39.4

Q ss_pred             HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           80 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        80 La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      +++.+.+..    ..-++.+|||+|||+|..+..++..++ +|++.|+++.+++.
T Consensus        16 i~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~   65 (285)
T 1zq9_A           16 IINSIIDKA----ALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAE   65 (285)
T ss_dssp             HHHHHHHHT----CCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHH
T ss_pred             HHHHHHHhc----CCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHH
Confidence            445554443    234688999999999999999988865 89999999999854

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.12  E-value=2e-05  Score=79.00  Aligned_cols=46  Identities=24%  Similarity=0.372  Sum_probs=36.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLA  142 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~  142 (330)
                      +|.+|||+|||+|..++.++..  +..+|++.|+++.+++. ...|+.+
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~-a~~n~~r  148 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRG-LLENVER  148 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHH-HHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHH
Confidence            6889999999999999887753  33589999999999865 2344443

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.11  E-value=3.5e-05  Score=76.33  Aligned_cols=40  Identities=15%  Similarity=0.157  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~  134 (330)
                      -+|.+|||+|||+|..++.++..  +..+|++.|+++..++.
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~  299 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKR  299 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHH
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence            36789999999999998887753  32689999999998855

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.11  E-value=2.2e-05  Score=75.24  Aligned_cols=67  Identities=16%  Similarity=0.216  Sum_probs=46.8

Q ss_pred             ccEEEEeccccCcccHH--HHHHHHHHHcCCCCcEEEEEe---ccc-----------cc---------cccccHHHHHHh
Q 020125          250 YDVILLTEIPYSVTSLK--KLYLLIKKCLRPPYGVVYLAT---KKN-----------YV---------GFNNAARHLRSL  304 (330)
Q Consensus       250 fDvILasD~iY~~~~~~--~L~~~i~~~L~~p~Gv~~lA~---k~~-----------yf---------Gv~gg~~~F~~~  304 (330)
                      ||+|++..++++-....  .+++-+.+.|+ |+|++++..   ...           .+         |..-+..+|.++
T Consensus       268 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l  346 (372)
T 1fp1_D          268 GDAMILKAVCHNWSDEKCIEFLSNCHKALS-PNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKL  346 (372)
T ss_dssp             EEEEEEESSGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHH
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHH
Confidence            99999999998765544  78888888896 889988762   100           00         222257888999


Q ss_pred             hhhcCceeEEEEe
Q 020125          305 VDEEGIFGAHLIK  317 (330)
Q Consensus       305 vee~G~f~~~~~~  317 (330)
                      +++.|+-..++..
T Consensus       347 l~~aGf~~~~~~~  359 (372)
T 1fp1_D          347 SKLSGFSKFQVAC  359 (372)
T ss_dssp             HHHTTCSEEEEEE
T ss_pred             HHHCCCceEEEEE
Confidence            9999974444433

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.10  E-value=1.3e-05  Score=78.28  Aligned_cols=61  Identities=21%  Similarity=0.118  Sum_probs=45.5

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--------------------------------------
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--------------------------------------  119 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga--------------------------------------  119 (330)
                      ..||..|....    ..-.+.+|||.+||+|...|.|+..++                                      
T Consensus       181 e~lAa~ll~~~----~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  256 (385)
T 3ldu_A          181 ETLAAGLIYLT----PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES  256 (385)
T ss_dssp             HHHHHHHHHTS----CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHHHhh----CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence            44777766542    234678999999999999999887543                                      


Q ss_pred             -CeEEEEeCChHHHHHhhHHHHHHH
Q 020125          120 -GTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus       120 -~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                       .+|++.|+++.+++. .+.|+..|
T Consensus       257 ~~~V~GvDid~~ai~~-Ar~Na~~~  280 (385)
T 3ldu_A          257 KFKIYGYDIDEESIDI-ARENAEIA  280 (385)
T ss_dssp             CCCEEEEESCHHHHHH-HHHHHHHH
T ss_pred             CceEEEEECCHHHHHH-HHHHHHHc
Confidence             369999999999976 34555544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.08  E-value=9.3e-06  Score=76.08  Aligned_cols=47  Identities=13%  Similarity=0.058  Sum_probs=38.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ...+|||||||+|.+++..+.. +..+|++.|+|+.+++. +..|+..|
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~-a~~~l~~~  179 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGF-VDEALTRL  179 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHH-HHHHHHHT
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHH-HHHHHHhc
Confidence            3569999999999999998765 67799999999999976 44555544

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.08  E-value=3.9e-06  Score=80.25  Aligned_cols=37  Identities=19%  Similarity=0.092  Sum_probs=31.6

Q ss_pred             CEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125           98 KRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        98 k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~  134 (330)
                      .+||+||||+|.....+++ ....+|++.|+++.+++.
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~  128 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARL  128 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHH
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHH
Confidence            4999999999999988887 333489999999999865

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.08  E-value=8.6e-05  Score=70.65  Aligned_cols=68  Identities=15%  Similarity=0.141  Sum_probs=47.2

Q ss_pred             CccEEEEeccccCcccHH--HHHHHHHHHcCCC---CcEEEEEecccc--------------c---------cccccHHH
Q 020125          249 GYDVILLTEIPYSVTSLK--KLYLLIKKCLRPP---YGVVYLATKKNY--------------V---------GFNNAARH  300 (330)
Q Consensus       249 ~fDvILasD~iY~~~~~~--~L~~~i~~~L~~p---~Gv~~lA~k~~y--------------f---------Gv~gg~~~  300 (330)
                      .||+|++..++++-..-.  .+++-+.+.|+ |   +|++++..-...              +         |..-+..+
T Consensus       251 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e  329 (358)
T 1zg3_A          251 SADAVLLKWVLHDWNDEQSLKILKNSKEAIS-HKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQE  329 (358)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHTG-GGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHH
T ss_pred             CceEEEEcccccCCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHH
Confidence            499999999998765544  78888888897 6   898888531100              0         11226788


Q ss_pred             HHHhhhhcCceeEEEEe
Q 020125          301 LRSLVDEEGIFGAHLIK  317 (330)
Q Consensus       301 F~~~vee~G~f~~~~~~  317 (330)
                      |.+++++.|+-..++..
T Consensus       330 ~~~ll~~aGf~~~~~~~  346 (358)
T 1zg3_A          330 WEKLIYDAGFSSYKITP  346 (358)
T ss_dssp             HHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHcCCCeeEEEe
Confidence            99999999974444433

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.06  E-value=3.7e-05  Score=75.08  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=43.5

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--------------------------------------
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--------------------------------------  119 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga--------------------------------------  119 (330)
                      ..||..|....    ..-.+..+||.+||+|-..|-|+..++                                      
T Consensus       180 e~LAaall~l~----~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  255 (384)
T 3ldg_A          180 ENMAAAIILLS----NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI  255 (384)
T ss_dssp             HHHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHh----CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence            45777666542    234678999999999999999886544                                      


Q ss_pred             -CeEEEEeCChHHHHHhhHHHHH
Q 020125          120 -GTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus       120 -~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                       .+|++.|+++.+++.. +.|+.
T Consensus       256 ~~~v~GvDid~~al~~A-r~Na~  277 (384)
T 3ldg_A          256 QLDISGFDFDGRMVEIA-RKNAR  277 (384)
T ss_dssp             CCCEEEEESCHHHHHHH-HHHHH
T ss_pred             CceEEEEECCHHHHHHH-HHHHH
Confidence             2599999999999663 34444

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.05  E-value=3.9e-05  Score=71.04  Aligned_cols=114  Identities=13%  Similarity=0.130  Sum_probs=74.8

Q ss_pred             CCEEEEEcccC---CHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           97 GKRVLELSCGY---GLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        97 ~k~VLELGcGt---GL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      ..+|||||||+   |.....+... ...+|++.|+++.||+..     +.++.                    ...+++|
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~A-----r~~~~--------------------~~~~v~~  132 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHG-----RALLA--------------------KDPNTAV  132 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHH-----HHHHT--------------------TCTTEEE
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHH-----HHhcC--------------------CCCCeEE
Confidence            47999999999   9876665543 224899999999998542     22221                    0135778


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..+|..+...++..-                                                ..    .......+||+
T Consensus       133 ~~~D~~~~~~~~~~~------------------------------------------------~~----~~~~d~~~~d~  160 (274)
T 2qe6_A          133 FTADVRDPEYILNHP------------------------------------------------DV----RRMIDFSRPAA  160 (274)
T ss_dssp             EECCTTCHHHHHHSH------------------------------------------------HH----HHHCCTTSCCE
T ss_pred             EEeeCCCchhhhccc------------------------------------------------hh----hccCCCCCCEE
Confidence            788765532111000                                                00    00012248999


Q ss_pred             EEEeccccCccc--HHHHHHHHHHHcCCCCcEEEEEec
Q 020125          253 ILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATK  288 (330)
Q Consensus       253 ILasD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA~k  288 (330)
                      |++.-+++.-..  ...+++-+.+.|+ |+|.+++...
T Consensus       161 v~~~~vlh~~~d~~~~~~l~~~~~~L~-pGG~l~i~~~  197 (274)
T 2qe6_A          161 IMLVGMLHYLSPDVVDRVVGAYRDALA-PGSYLFMTSL  197 (274)
T ss_dssp             EEETTTGGGSCTTTHHHHHHHHHHHSC-TTCEEEEEEE
T ss_pred             EEEechhhhCCcHHHHHHHHHHHHhCC-CCcEEEEEEe
Confidence            999999986544  7888999999996 8899888753

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.04  E-value=2.4e-05  Score=73.75  Aligned_cols=47  Identities=17%  Similarity=0.123  Sum_probs=33.2

Q ss_pred             cHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEEE
Q 020125          264 SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLI  316 (330)
Q Consensus       264 ~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~~  316 (330)
                      .++.+++.+.+.|+ |+|.+++..-..     +...++.+.+++.|+..++.+
T Consensus       149 l~~~~l~~a~r~Lk-pGG~~v~~~~~~-----~~~~~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          149 FFTYLCGFIKQKLA-LGGSIAVKITEH-----SWNADLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             HHHHHHHHHHHHEE-EEEEEEEEECSS-----SCCHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcC-CCcEEEEEEecc-----CCHHHHHHHHHHcCCcEEEEE
Confidence            35677888888997 889988754322     234688899998886555554

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.04  E-value=2e-05  Score=77.09  Aligned_cols=60  Identities=20%  Similarity=0.161  Sum_probs=43.7

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--------------------------------------
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--------------------------------------  119 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga--------------------------------------  119 (330)
                      ..||..|....    ..-.+..|||.+||+|...|.|+..++                                      
T Consensus       187 e~lAa~ll~l~----~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  262 (393)
T 3k0b_A          187 ETMAAALVLLT----SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ  262 (393)
T ss_dssp             HHHHHHHHHHS----CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHh----CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence            45666666542    234678999999999999999887544                                      


Q ss_pred             -CeEEEEeCChHHHHHhhHHHHHH
Q 020125          120 -GTVHFQDLSAETIRCTTVPNVLA  142 (330)
Q Consensus       120 -~~V~~tD~~~~vl~~~t~pNv~~  142 (330)
                       .+|++.|+++.+++.+ +.|+..
T Consensus       263 ~~~V~GvDid~~al~~A-r~Na~~  285 (393)
T 3k0b_A          263 PLNIIGGDIDARLIEIA-KQNAVE  285 (393)
T ss_dssp             CCCEEEEESCHHHHHHH-HHHHHH
T ss_pred             CceEEEEECCHHHHHHH-HHHHHH
Confidence             2599999999999663 444443

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.04  E-value=9.6e-06  Score=80.11  Aligned_cols=37  Identities=22%  Similarity=0.265  Sum_probs=28.4

Q ss_pred             CCCCEEEEEccc------CCHHHHHHHHc--CCCeEEEEeCChHH
Q 020125           95 FRGKRVLELSCG------YGLPGIFACLK--GAGTVHFQDLSAET  131 (330)
Q Consensus        95 ~~~k~VLELGcG------tGL~gi~a~~~--ga~~V~~tD~~~~v  131 (330)
                      .++.+|||||||      +|..++.+++.  ...+|+++|+++.+
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m  259 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS  259 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH
Confidence            467899999999      66666665542  33599999999985

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.03  E-value=1.9e-05  Score=73.06  Aligned_cols=39  Identities=10%  Similarity=-0.121  Sum_probs=33.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~  135 (330)
                      .+++|||+|||+|.....+++.+ .+|++.|+++.+++.+
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~a  110 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSF  110 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGG
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHH
Confidence            46899999999999888777777 8999999999998653

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.01  E-value=1.3e-05  Score=75.15  Aligned_cols=39  Identities=23%  Similarity=0.218  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .++.+|||+|||+|..++.++..++ +|++.|+++.+++.
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~   79 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISE   79 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHH
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHH
Confidence            4688999999999999999988754 89999999999855

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.00  E-value=2.7e-05  Score=72.06  Aligned_cols=38  Identities=21%  Similarity=0.342  Sum_probs=33.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ....+|||||||+|.+++...  ++.+++++|+++.+++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~  141 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDV  141 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHH
Confidence            457799999999999999887  67799999999999965

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.00  E-value=1.6e-05  Score=79.42  Aligned_cols=59  Identities=15%  Similarity=0.166  Sum_probs=42.7

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ++..++..+.        .-+|.+|||+|||+|..++.++..  +..+|++.|+++..++. +..|+.++
T Consensus        93 ss~l~~~~L~--------~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~-~~~n~~r~  153 (456)
T 3m4x_A           93 SAMIVGTAAA--------AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKI-LSENIERW  153 (456)
T ss_dssp             TTHHHHHHHC--------CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHcC--------CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHH-HHHHHHHc
Confidence            4455555553        236889999999999988887653  44689999999999865 34555544

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.00  E-value=7.7e-06  Score=73.58  Aligned_cols=38  Identities=11%  Similarity=-0.055  Sum_probs=30.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCC-hHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLS-AETIR  133 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~-~~vl~  133 (330)
                      .+.+|||+|||+|...+.+++. ...+|++.|++ +.+++
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~   63 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFD   63 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHH
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            5789999999999999888742 33489999999 66653

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.99  E-value=0.00015  Score=69.40  Aligned_cols=131  Identities=14%  Similarity=0.109  Sum_probs=85.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      ..++|+|+|||+|...+.+++. ...++++.|. +.+++.     ...+...                  ....+|.|..
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~-----a~~~~~~------------------~~~~rv~~~~  234 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWT-----AKQHFSF------------------QEEEQIDFQE  234 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHH-----HHHHSCC--------------------CCSEEEEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHH-----HHHhhhh------------------cccCceeeec
Confidence            4579999999999999887764 3347888888 556633     2222110                  1235688777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      ||.-+.                                                                 ...++|+|+
T Consensus       235 gD~~~~-----------------------------------------------------------------~~~~~D~~~  249 (353)
T 4a6d_A          235 GDFFKD-----------------------------------------------------------------PLPEADLYI  249 (353)
T ss_dssp             SCTTTS-----------------------------------------------------------------CCCCCSEEE
T ss_pred             CccccC-----------------------------------------------------------------CCCCceEEE
Confidence            763210                                                                 124679999


Q ss_pred             EeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEeccc-----------cc---------cccccHHHHHHhhhhcCcee
Q 020125          255 LTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKN-----------YV---------GFNNAARHLRSLVDEEGIFG  312 (330)
Q Consensus       255 asD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~~-----------yf---------Gv~gg~~~F~~~vee~G~f~  312 (330)
                      ...++++-  +....+++-+.+.|+ |+|+++|.-.-.           ++         |...+..+|.+++++.|+=.
T Consensus       250 ~~~vlh~~~d~~~~~iL~~~~~al~-pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~  328 (353)
T 4a6d_A          250 LARVLHDWADGKCSHLLERIYHTCK-PGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRD  328 (353)
T ss_dssp             EESSGGGSCHHHHHHHHHHHHHHCC-TTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEE
T ss_pred             eeeecccCCHHHHHHHHHHHHhhCC-CCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence            99999864  334567777887886 889988863210           11         22236789999999999755


Q ss_pred             EEEE
Q 020125          313 AHLI  316 (330)
Q Consensus       313 ~~~~  316 (330)
                      +++.
T Consensus       329 v~v~  332 (353)
T 4a6d_A          329 FQFK  332 (353)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.97  E-value=0.00012  Score=71.84  Aligned_cols=52  Identities=15%  Similarity=0.151  Sum_probs=39.5

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHH
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC  134 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~  134 (330)
                      +++..++..+.        ..+|.+|||+|||+|..++.++..+. .+|++.|+++..++.
T Consensus       233 ~~s~~~~~~l~--------~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~  285 (429)
T 1sqg_A          233 ASAQGCMTWLA--------PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSR  285 (429)
T ss_dssp             HHHHTHHHHHC--------CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHH
T ss_pred             HHHHHHHHHcC--------CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            34455555553        23688999999999999988876543 599999999998855

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.96  E-value=2.2e-05  Score=74.25  Aligned_cols=45  Identities=20%  Similarity=0.170  Sum_probs=35.4

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeC
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL  127 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~  127 (330)
                      ++..|.+.+.+.     ..-+|++|||||||+|..+.+++..  .+|++.|.
T Consensus        67 ~a~KL~~i~~~~-----~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~  111 (305)
T 2p41_A           67 GSAKLRWFVERN-----LVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKG  111 (305)
T ss_dssp             HHHHHHHHHHTT-----SSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEE
T ss_pred             HHHHHHHHHHcC-----CCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEec
Confidence            566676655542     3346889999999999999999887  37999998

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.96  E-value=4.4e-05  Score=76.65  Aligned_cols=47  Identities=15%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .|.+|||+|||+|..++.++..  +..+|++.|+++..++. +..|+.++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~-~~~n~~r~  165 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKV-LHANISRC  165 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHH-HHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence            6889999999999999887753  23589999999999865 34455443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.90  E-value=6.2e-05  Score=71.07  Aligned_cols=66  Identities=15%  Similarity=0.062  Sum_probs=42.0

Q ss_pred             CCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           62 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        62 l~~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      +.+.+..|---+.+.  .+++.+.+..    ...++.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus        22 ~~~~k~~GQnfL~d~--~i~~~Iv~~l----~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~   87 (295)
T 3gru_A           22 FKPKKKLGQCFLIDK--NFVNKAVESA----NLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPY   87 (295)
T ss_dssp             --------CCEECCH--HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHH
T ss_pred             CCCccccCccccCCH--HHHHHHHHhc----CCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHH
Confidence            334444443224443  3344444442    23468899999999999999988875 599999999999854

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.88  E-value=0.00011  Score=66.73  Aligned_cols=51  Identities=10%  Similarity=0.105  Sum_probs=40.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .+++.+.+..    ....+.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus        17 ~~~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~   67 (244)
T 1qam_A           17 HNIDKIMTNI----RLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKT   67 (244)
T ss_dssp             HHHHHHHTTC----CCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHH
T ss_pred             HHHHHHHHhC----CCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHH
Confidence            4455555442    23468899999999999999998887 589999999998854

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.77  E-value=6e-05  Score=63.87  Aligned_cols=63  Identities=25%  Similarity=0.351  Sum_probs=47.5

Q ss_pred             CCCccEEEEeccccCc-ccHHHHHHHHHHHcCCCCcEEEEEeccccc----cccccHHHHHHhhhhcCc
Q 020125          247 EGGYDVILLTEIPYSV-TSLKKLYLLIKKCLRPPYGVVYLATKKNYV----GFNNAARHLRSLVDEEGI  310 (330)
Q Consensus       247 ~~~fDvILasD~iY~~-~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yf----Gv~gg~~~F~~~vee~G~  310 (330)
                      .+.||+|+++.++... ...+.+++-+.++|+ |+|++++.......    .......++.+.+++.|+
T Consensus        61 ~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           61 ESSFDIILSGLVPGSTTLHSAEILAEIARILR-PGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             SSCEEEEEECCSTTCCCCCCHHHHHHHHHHEE-EEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             CCCEeEEEECChhhhcccCHHHHHHHHHHHCC-CCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            4689999999998876 667888888999997 89999885431100    001247889999999997

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.67  E-value=0.00012  Score=68.23  Aligned_cols=48  Identities=17%  Similarity=0.137  Sum_probs=37.2

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCCh
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA  129 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~  129 (330)
                      .++..|.+.+...     ...+|++|||||||+|..+..++..  .+|++.|+++
T Consensus        66 R~a~KL~~i~~~~-----~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~  113 (276)
T 2wa2_A           66 RGTAKLAWIDERG-----GVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT  113 (276)
T ss_dssp             HHHHHHHHHHHTT-----SCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC
T ss_pred             hHHHHHHHHHHcC-----CCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch
Confidence            3455565555431     3447889999999999999998887  4899999988

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.66  E-value=0.00019  Score=66.40  Aligned_cols=48  Identities=19%  Similarity=0.163  Sum_probs=37.6

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCCh
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA  129 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~  129 (330)
                      .++..|.+.+...     ...++++|||||||+|..+..++..  .+|++.|+++
T Consensus        58 R~a~KL~~i~~~~-----~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~  105 (265)
T 2oxt_A           58 RGTAKLAWMEERG-----YVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT  105 (265)
T ss_dssp             THHHHHHHHHHHT-----SCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC
T ss_pred             hHHHHHHHHHHcC-----CCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch
Confidence            3556666665542     3457889999999999999998877  5899999988

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.65  E-value=0.00025  Score=69.96  Aligned_cols=53  Identities=19%  Similarity=0.143  Sum_probs=39.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--------------CCCeEEEEeCChHHHHHh
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--------------GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--------------ga~~V~~tD~~~~vl~~~  135 (330)
                      .++++|.+..    ....+.+|||.|||+|...+.++..              ...+++++|+++.+++.+
T Consensus       158 ~v~~~mv~~l----~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA  224 (445)
T 2okc_A          158 PLIQAMVDCI----NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA  224 (445)
T ss_dssp             HHHHHHHHHH----CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHh----CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence            3556665543    1235789999999999988887653              224799999999998663

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.58  E-value=9.5e-05  Score=68.18  Aligned_cols=46  Identities=20%  Similarity=0.193  Sum_probs=37.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCCh-------HHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA-------ETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~-------~vl~~~t~pNv~~N  143 (330)
                      ++.+|||+|||+|..++.++..|. +|++.|+++       ++++.. ..|+..|
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a-~~n~~~~  135 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRA-LLNPETQ  135 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHH-HHSHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHH-HhHHHhh
Confidence            578999999999999999998876 899999999       666542 3454444

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.55  E-value=0.00039  Score=72.89  Aligned_cols=61  Identities=20%  Similarity=0.110  Sum_probs=44.2

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--------------------------------------
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--------------------------------------  119 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga--------------------------------------  119 (330)
                      ..||..|....    ..-.+..|||.+||+|-..|.|+..++                                      
T Consensus       176 e~LAa~ll~~~----~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~  251 (703)
T 3v97_A          176 ETLAAAIVMRS----GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG  251 (703)
T ss_dssp             HHHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh----CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence            45777776543    223678999999999999998876431                                      


Q ss_pred             -----CeEEEEeCChHHHHHhhHHHHHHH
Q 020125          120 -----GTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus       120 -----~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                           .+|++.|+++.+++.. +.|+..+
T Consensus       252 ~~~~~~~i~G~Did~~av~~A-~~N~~~a  279 (703)
T 3v97_A          252 LAEYSSHFYGSDSDARVIQRA-RTNARLA  279 (703)
T ss_dssp             HHHCCCCEEEEESCHHHHHHH-HHHHHHT
T ss_pred             cccCCccEEEEECCHHHHHHH-HHHHHHc
Confidence                 3799999999999763 4454433

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.55  E-value=0.00024  Score=65.44  Aligned_cols=40  Identities=8%  Similarity=0.176  Sum_probs=35.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .-++.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~   66 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAF   66 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHH
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHH
Confidence            3468899999999999999998887 589999999999854

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.46  E-value=0.00013  Score=62.57  Aligned_cols=54  Identities=19%  Similarity=0.174  Sum_probs=43.9

Q ss_pred             CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHH-cCCCeEEEEeCChHHH
Q 020125           69 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACL-KGAGTVHFQDLSAETI  132 (330)
Q Consensus        69 gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL-~gi~a~~-~ga~~V~~tD~~~~vl  132 (330)
                      -++|.|+   .|++||.+..      ..+.+|||+|||.|. .+..++. .|. .|++||+++..+
T Consensus        17 ~~~~m~e---~LaeYI~~~~------~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av   72 (153)
T 2k4m_A           17 RGSHMWN---DLAVYIIRCS------GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHG   72 (153)
T ss_dssp             CCCHHHH---HHHHHHHHHS------CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSST
T ss_pred             chhhHHH---HHHHHHHhcC------CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCcccc
Confidence            4677865   5999998763      245799999999995 9988886 776 899999999765

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.40  E-value=0.00017  Score=66.01  Aligned_cols=56  Identities=14%  Similarity=0.125  Sum_probs=43.0

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      +++.  .+++.+.+..    ...++.+|||+|||+|..+..++..|+.+|++.|+++.+++.
T Consensus        14 l~d~--~i~~~iv~~~----~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~   69 (249)
T 3ftd_A           14 LVSE--GVLKKIAEEL----NIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVEN   69 (249)
T ss_dssp             EECH--HHHHHHHHHT----TCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHH
T ss_pred             cCCH--HHHHHHHHhc----CCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence            5553  3344454443    234688999999999999999998877799999999998854

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.39  E-value=0.0012  Score=62.45  Aligned_cols=46  Identities=15%  Similarity=0.157  Sum_probs=36.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      -+|.+|||+|||+|-.++.++..  +..+|++.|+++..++. +..|+.
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~-~~~n~~  148 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLAS-MATLLA  148 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHH
Confidence            36889999999999988887753  45699999999999865 234443

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.35  E-value=0.00024  Score=70.10  Aligned_cols=62  Identities=19%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           74 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        74 W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      |.++..+++|.....      -.|++|||+|||+|..+++++..++ +|++.|+++.+++. ...|+..|
T Consensus        77 Qat~e~vA~~~a~~l------~~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~-Ar~N~~~~  138 (410)
T 3ll7_A           77 QSSGAVTSSYKSRFI------REGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVA-ARHNIPLL  138 (410)
T ss_dssp             HSCCHHHHHHGGGGS------CTTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHH-HHHHHHHH
T ss_pred             hcCHHHHHHHHHHhc------CCCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHH-HHHhHHHh
Confidence            445566777755321      1389999999999999999988765 99999999999976 45666655

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.34  E-value=0.00029  Score=73.84  Aligned_cols=37  Identities=14%  Similarity=0.081  Sum_probs=28.8

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc----C----------CCeEEEEeCChHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK----G----------AGTVHFQDLSAETI  132 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~----g----------a~~V~~tD~~~~vl  132 (330)
                      +++.||++|||+|.++.+++.+    |          +.+|++.|.|+.++
T Consensus       409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~  459 (745)
T 3ua3_A          409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI  459 (745)
T ss_dssp             SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH
Confidence            4579999999999998654332    2          34999999999766

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.33  E-value=0.0005  Score=63.98  Aligned_cols=38  Identities=24%  Similarity=0.196  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -++ +|||+|||+|..+..++..++ +|++.|+++.+++.
T Consensus        46 ~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~   83 (271)
T 3fut_A           46 FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPV   83 (271)
T ss_dssp             CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHH
T ss_pred             CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence            457 999999999999999998874 89999999999854

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.12  E-value=0.00051  Score=64.14  Aligned_cols=51  Identities=22%  Similarity=0.268  Sum_probs=39.0

Q ss_pred             HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCe---EEEEeCChHHHHH
Q 020125           80 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT---VHFQDLSAETIRC  134 (330)
Q Consensus        80 La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~---V~~tD~~~~vl~~  134 (330)
                      +++.|.+..    ..-.+.+|||+|||+|..+..++..+..+   |++.|+++.+++.
T Consensus        30 i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~   83 (279)
T 3uzu_A           30 VIDAIVAAI----RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGR   83 (279)
T ss_dssp             HHHHHHHHH----CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHH
T ss_pred             HHHHHHHhc----CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHH
Confidence            344454443    23468899999999999999988776532   9999999999865

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.06  E-value=0.014  Score=59.28  Aligned_cols=46  Identities=17%  Similarity=0.065  Sum_probs=35.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc----CCCeEEEEeCChHHHHHhhHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK----GAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~----ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      ..+.+|+|.+||+|-..+.++..    +..+++++|+++.+++.+ +-|+.
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA-~~Nl~  269 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLA-RMNMI  269 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHH-HHHHH
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHH-HHHHH
Confidence            46789999999999777776653    356899999999998764 34443

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.94  E-value=0.015  Score=54.34  Aligned_cols=61  Identities=20%  Similarity=0.154  Sum_probs=44.8

Q ss_pred             CCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChH
Q 020125           65 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAE  130 (330)
Q Consensus        65 ~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~  130 (330)
                      |.-.+|.-.=-++..|.+...+.     ..-.+.+|||||||+|-.+-+|+.. ++..|.+.|+.-+
T Consensus        48 ~~~~~~~YrSRaA~KL~ei~ek~-----~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvD  109 (277)
T 3evf_A           48 GKVDTGVAVSRGTAKLRWFHERG-----YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRD  109 (277)
T ss_dssp             TCCSSCBCSSTHHHHHHHHHHTT-----SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCccCCCccccHHHHHHHHHHhC-----CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEecc
Confidence            33333433556888898888863     3446779999999999999988764 7778888888643

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.94  E-value=0.021  Score=50.89  Aligned_cols=43  Identities=14%  Similarity=0.044  Sum_probs=31.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      +.++|||+|||  ..++.+++....+|+..|.+++..+. .+.|+.
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~-ar~~l~   72 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARM-MKAWLA   72 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHH-HHHHHH
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHH-HHHHHH
Confidence            46899999985  67788776424699999999998755 234444

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=96.92  E-value=0.0012  Score=60.55  Aligned_cols=48  Identities=10%  Similarity=0.140  Sum_probs=35.5

Q ss_pred             HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCe--EEEEeCChHHHHH
Q 020125           80 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT--VHFQDLSAETIRC  134 (330)
Q Consensus        80 La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~--V~~tD~~~~vl~~  134 (330)
                      +++.+.+..    ..-.+.+|||+|||+|..+. +.. + .+  |++.|+++.+++.
T Consensus         9 i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~   58 (252)
T 1qyr_A            9 VIDSIVSAI----NPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAAR   58 (252)
T ss_dssp             HHHHHHHHH----CCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHH
T ss_pred             HHHHHHHhc----CCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHH
Confidence            344444443    23467899999999999999 654 3 36  9999999999854

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=96.88  E-value=0.0018  Score=61.17  Aligned_cols=40  Identities=18%  Similarity=0.086  Sum_probs=34.4

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|..++.++... ..+|++.|.++++++.
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~   65 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRI   65 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            368899999999999999888753 4599999999999854

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.86  E-value=0.0022  Score=59.81  Aligned_cols=51  Identities=25%  Similarity=0.223  Sum_probs=42.0

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..|++.+....     ..+|..|||++||+|..+++|+..|. +++++|+++++++.
T Consensus       222 ~~l~~~~i~~~-----~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~  272 (297)
T 2zig_A          222 LELAERLVRMF-----SFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQL  272 (297)
T ss_dssp             HHHHHHHHHHH-----CCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence            45666665442     34788999999999999999999986 89999999999865

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=96.77  E-value=0.012  Score=59.78  Aligned_cols=42  Identities=19%  Similarity=0.023  Sum_probs=30.9

Q ss_pred             EEEEEcccCCHHHHHHHHc--------C--------CCeEEEEeCChHHHHHhhHHHHH
Q 020125           99 RVLELSCGYGLPGIFACLK--------G--------AGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        99 ~VLELGcGtGL~gi~a~~~--------g--------a~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      +|||.+||+|-..+.++..        +        ..+++++|+++.+++.+ +-|+.
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA-~~Nl~  304 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLA-AMNMV  304 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHH-HHHHH
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHH-HHHHH
Confidence            9999999999776665421        1        34899999999998764 33443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.76  E-value=0.03  Score=52.73  Aligned_cols=40  Identities=15%  Similarity=0.154  Sum_probs=33.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      ..++||-+|-|.|...-.+.+. +..+|++.|+++.|++.+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a  123 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFC  123 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHH
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHH
Confidence            4689999999999777666664 568999999999999764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=96.74  E-value=0.003  Score=64.09  Aligned_cols=52  Identities=17%  Similarity=-0.017  Sum_probs=37.0

Q ss_pred             HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc----C---------------CCeEEEEeCChHHHHHh
Q 020125           80 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK----G---------------AGTVHFQDLSAETIRCT  135 (330)
Q Consensus        80 La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~----g---------------a~~V~~tD~~~~vl~~~  135 (330)
                      ++++|.+..    ....+.+|||.+||+|-..+.++..    +               ..+++++|+++.+++.+
T Consensus       157 iv~~mv~~l----~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA  227 (541)
T 2ar0_A          157 LIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  227 (541)
T ss_dssp             HHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             HHHHHHHHh----ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence            445554443    1235789999999999888777642    1               13799999999998763

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.64  E-value=0.0015  Score=61.39  Aligned_cols=153  Identities=10%  Similarity=0.017  Sum_probs=98.4

Q ss_pred             CCCCCCCCc-ccchh-H---HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhH
Q 020125           63 ISSKPDGFL-KCWES-S---IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTV  137 (330)
Q Consensus        63 ~~~~y~gg~-k~W~s-s---~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~  137 (330)
                      ++|-|..|. ++|.. .   ..|..|+.-..     .+.+..+||+=+|||.+|+-+.. ++.++++.|.++..++    
T Consensus        58 ktgE~~~GI~rl~~~~~~~p~~l~~yf~~l~-----~~n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~----  127 (283)
T 2oo3_A           58 KTEEYKEGINPVWLDRENLPSLFLEYISVIK-----QINLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYN----  127 (283)
T ss_dssp             -CCGGGGTHHHHHHTGGGSCGGGHHHHHHHH-----HHSSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHH----
T ss_pred             hcHHHHHHHHHHHhcccCCcHHHHHHHHHHH-----HhcCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHH----
Confidence            455666664 78883 2   23445554321     25677899999999999999988 5689999999999874    


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecc-cCCCcchhhhhccccccccccccccccccccccCCCCCCC
Q 020125          138 PNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD-WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDG  216 (330)
Q Consensus       138 pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gd-W~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~  216 (330)
                       .++.|+..                    ..+++++..| +..+..                                  
T Consensus       128 -~L~~Nl~~--------------------~~~~~V~~~D~~~~L~~----------------------------------  152 (283)
T 2oo3_A          128 -FLLKLPHF--------------------NKKVYVNHTDGVSKLNA----------------------------------  152 (283)
T ss_dssp             -HHTTSCCT--------------------TSCEEEECSCHHHHHHH----------------------------------
T ss_pred             -HHHHHhCc--------------------CCcEEEEeCcHHHHHHH----------------------------------
Confidence             34545421                    1245555544 111000                                  


Q ss_pred             cccccCCcccccccccCchhhhhhcccccCCCCccEEEEeccccC-cccHHHHHHHHHHH-cCCCCcEEEEEeccccccc
Q 020125          217 SIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYS-VTSLKKLYLLIKKC-LRPPYGVVYLATKKNYVGF  294 (330)
Q Consensus       217 ~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~-~~~~~~L~~~i~~~-L~~p~Gv~~lA~k~~yfGv  294 (330)
                                                ......+||+|+. |=.|. ...++.+++.|.+. ++.++|++.|-..-..   
T Consensus       153 --------------------------l~~~~~~fdLVfi-DPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~---  202 (283)
T 2oo3_A          153 --------------------------LLPPPEKRGLIFI-DPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN---  202 (283)
T ss_dssp             --------------------------HCSCTTSCEEEEE-CCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS---
T ss_pred             --------------------------hcCCCCCccEEEE-CCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccc---
Confidence                                      0012346998875 99998 46888888777763 4458898776654332   


Q ss_pred             cccHHHHHHhhhhcCc
Q 020125          295 NNAARHLRSLVDEEGI  310 (330)
Q Consensus       295 ~gg~~~F~~~vee~G~  310 (330)
                      ..-.+.|.+.+++.|+
T Consensus       203 ~~~~~~~~~~l~~~~~  218 (283)
T 2oo3_A          203 KAWTEQFLRKMREISS  218 (283)
T ss_dssp             HHHHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHHhcCC
Confidence            2357889999987764

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.54  E-value=0.00051  Score=61.96  Aligned_cols=39  Identities=15%  Similarity=0.070  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||+|||+|..++.++..+ .+|++.|+++.+++.
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~   66 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNL   66 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSS
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHH
Confidence            467899999999999999998887 589999999998743

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.53  E-value=0.017  Score=61.54  Aligned_cols=40  Identities=8%  Similarity=-0.024  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC----CCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG----AGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g----a~~V~~tD~~~~vl~~  134 (330)
                      -.+.+|||.|||+|...+.++...    ..+++++|+++.+++.
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~L  363 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLEL  363 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHH
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHH
Confidence            357899999999999888877642    2479999999998865

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.43  E-value=0.019  Score=55.87  Aligned_cols=35  Identities=14%  Similarity=-0.077  Sum_probs=31.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCCh
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA  129 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~  129 (330)
                      .-+|++||||||++|-.+-.++..|+ +|++.|..+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~  243 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP  243 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh
Confidence            45799999999999999999998887 899999764

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=96.41  E-value=0.018  Score=53.84  Aligned_cols=37  Identities=14%  Similarity=0.142  Sum_probs=27.3

Q ss_pred             CEEEEEcccC---CHHHHHHH-HcCCCeEEEEeCChHHHHH
Q 020125           98 KRVLELSCGY---GLPGIFAC-LKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        98 k~VLELGcGt---GL~gi~a~-~~ga~~V~~tD~~~~vl~~  134 (330)
                      .+|||||||+   |...-.+. .....+|+..|.++.||+.
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~  120 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTL  120 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHH
Confidence            6899999996   44443333 3333589999999999965

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=96.36  E-value=0.0041  Score=57.46  Aligned_cols=44  Identities=11%  Similarity=0.140  Sum_probs=36.7

Q ss_pred             CC--CEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHH
Q 020125           96 RG--KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL  141 (330)
Q Consensus        96 ~~--k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~  141 (330)
                      .+  .+|||+|||+|..++.++..|+ +|++.|.++.+.+. +..|+.
T Consensus        86 ~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l-~~~~l~  131 (258)
T 2oyr_A           86 GDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAAL-LDDGLA  131 (258)
T ss_dssp             TTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHH-HHHHHH
T ss_pred             CCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHH-HHHHHH
Confidence            45  8999999999999999998887 79999999988754 344544

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.25  E-value=0.0079  Score=54.88  Aligned_cols=59  Identities=22%  Similarity=0.104  Sum_probs=45.1

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ..|++.+.+..     .-+|..|||..||+|-.+++|.+.|. +++++|+++..++. ++.|+..|
T Consensus       199 ~~l~~~~i~~~-----~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~-~~~r~~~~  257 (260)
T 1g60_A          199 RDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQ-ANFVLNQL  257 (260)
T ss_dssp             HHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHH-HHHHHHC-
T ss_pred             HHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHH-HHHHHHhc
Confidence            45555555442     35788999999999999999999986 89999999998865 45555543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.90  E-value=0.025  Score=55.14  Aligned_cols=40  Identities=23%  Similarity=0.141  Sum_probs=34.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -..|+||-+|-|.|...-.+.+...++|++.|++++|++.
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~  243 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDG  243 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHH
Confidence            3568999999999988777777777899999999999865

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=92.09  E-value=0.17  Score=47.42  Aligned_cols=53  Identities=23%  Similarity=0.199  Sum_probs=41.4

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH-HcCCCeEEEEeCChH
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAE  130 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~-~~ga~~V~~tD~~~~  130 (330)
                      .=-|++-|.+...+.     ....+.+|||||||.|-.+-+|+ ..++..|++.|+...
T Consensus        72 rSRAAfKL~ei~eK~-----~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d  125 (282)
T 3gcz_A           72 VSRGSAKLRWMEERG-----YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ  125 (282)
T ss_dssp             SSTHHHHHHHHHHTT-----SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             ecHHHHHHHHHHHhc-----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC
Confidence            345778888777753     34577799999999999999887 567888999988664

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=91.86  E-value=2.6  Score=42.34  Aligned_cols=53  Identities=15%  Similarity=0.110  Sum_probs=36.7

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--------------CCCeEEEEeCChHHHHHh
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--------------GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--------------ga~~V~~tD~~~~vl~~~  135 (330)
                      .++++|.+..    ....+.+|+|-.||+|-.-+.+...              ....++++|+++.+++.+
T Consensus       204 ~Vv~lmv~l~----~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la  270 (530)
T 3ufb_A          204 PVVRFMVEVM----DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLV  270 (530)
T ss_dssp             HHHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHH
T ss_pred             HHHHHHHHhh----ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHH
Confidence            4555555543    2346779999999999766665431              123699999999988764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=91.09  E-value=0.16  Score=48.15  Aligned_cols=62  Identities=15%  Similarity=0.103  Sum_probs=45.3

Q ss_pred             CCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH-HcCCCeEEEEeCChH
Q 020125           64 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAE  130 (330)
Q Consensus        64 ~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~-~~ga~~V~~tD~~~~  130 (330)
                      .|.-.+|.-.=-++.-|.+...+.     ....+.+||||||++|-.+-+++ +.|++.|++.|+-..
T Consensus        67 ~g~~~~g~y~SR~~~KL~ei~~~~-----~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~  129 (321)
T 3lkz_A           67 EGNVTGGHPVSRGTAKLRWLVERR-----FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP  129 (321)
T ss_dssp             HTCCSSCCCSSTHHHHHHHHHHTT-----SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST
T ss_pred             cCcCcCCCccchHHHHHHHHHHhc-----CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC
Confidence            344444443555777777777653     34577799999999999998655 578889999999663

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=90.66  E-value=0.27  Score=45.28  Aligned_cols=51  Identities=22%  Similarity=0.289  Sum_probs=39.4

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH-HcCCCeEEEEeCChH
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAE  130 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~-~~ga~~V~~tD~~~~  130 (330)
                      -++.-|.+...+.     ....+.+||||||++|-.+-+++ +.|+++|++.|+-..
T Consensus        62 Ra~~KL~ei~ek~-----~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~  113 (267)
T 3p8z_A           62 RGSAKLQWFVERN-----MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGP  113 (267)
T ss_dssp             THHHHHHHHHHTT-----SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCST
T ss_pred             hHHHHHHHHHHhc-----CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCC
Confidence            4666676666544     34577899999999999998655 578899999999663

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=90.32  E-value=0.47  Score=44.88  Aligned_cols=46  Identities=20%  Similarity=0.134  Sum_probs=38.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL  144 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~  144 (330)
                      ...+.+||||-||+|-.++.+...|++.|.+.|+++.+++     ....|.
T Consensus         8 ~~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~-----t~~~N~   53 (327)
T 2c7p_A            8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQE-----VYEMNF   53 (327)
T ss_dssp             TTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHH-----HHHHHH
T ss_pred             ccCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHH-----HHHHHc
Confidence            3467899999999999999999999999999999998873     455564

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=88.32  E-value=1.2  Score=41.37  Aligned_cols=33  Identities=18%  Similarity=-0.036  Sum_probs=25.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc----C--CCeEEEEeCC
Q 020125           96 RGKRVLELSCGYGLPGIFACLK----G--AGTVHFQDLS  128 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~----g--a~~V~~tD~~  128 (330)
                      ..+.|||+|+..|..++.++..    |  ..+|++.|..
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dtf  144 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSF  144 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECS
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECC
Confidence            4679999999999988886531    1  3589999964

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=87.70  E-value=0.66  Score=43.73  Aligned_cols=52  Identities=21%  Similarity=0.174  Sum_probs=40.7

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCCh
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSA  129 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~  129 (330)
                      .=-|++-|.+...+.     ..-++++||||||++|-.+-+++. .++..|++.|+..
T Consensus        63 rSRaa~KL~ei~ek~-----l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           63 VSRGAAKIRWLHERG-----YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             SSTTHHHHHHHHHHT-----SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             cchHHHHHHHHHHhC-----CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            334677777777652     455899999999999999998886 5788899988865

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=87.36  E-value=10  Score=36.15  Aligned_cols=64  Identities=20%  Similarity=0.157  Sum_probs=40.1

Q ss_pred             CCcccchhHH-HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           69 GFLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        69 gg~k~W~ss~-~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      -.++.|+++- .|.+++...       -.+.+||-++.+.|-++..++..+.  +.++|  +-+-+..+..|+.+|
T Consensus        17 ~~l~a~da~d~~ll~~~~~~-------~~~~~~~~~~d~~gal~~~~~~~~~--~~~~d--s~~~~~~~~~n~~~~   81 (375)
T 4dcm_A           17 NPLQAWEAADEYLLQQLDDT-------EIRGPVLILNDAFGALSCALAEHKP--YSIGD--SYISELATRENLRLN   81 (375)
T ss_dssp             CSCCSCCHHHHHHHHTTTTC-------CCCSCEEEECCSSSHHHHHTGGGCC--EEEES--CHHHHHHHHHHHHHT
T ss_pred             CCCCccchHHHHHHHhhhhc-------cCCCCEEEECCCCCHHHHhhccCCc--eEEEh--HHHHHHHHHHHHHHc
Confidence            3688999984 334443321       1456899999999988877665443  34455  333344556666666

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=86.82  E-value=0.89  Score=43.65  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=32.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR  133 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~  133 (330)
                      .+..|||+|.|.|.++..++.. ++++|++.++++..+.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~   96 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK   96 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHH
Confidence            5689999999999999888764 4678999999998663

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=86.17  E-value=0.8  Score=43.37  Aligned_cols=36  Identities=28%  Similarity=0.106  Sum_probs=32.3

Q ss_pred             CEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHH
Q 020125           98 KRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIR  133 (330)
Q Consensus        98 k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~  133 (330)
                      .+||||-||+|..++.+...|  ++.|++.|+++.+++
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~   40 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANE   40 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHH
Confidence            589999999999999999888  568999999999874

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=85.64  E-value=1.2  Score=41.65  Aligned_cols=39  Identities=18%  Similarity=0.049  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -+|..+||.+||.|--+..++..+ .+|++.|.++++++.
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~   59 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVAR   59 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHH
Confidence            367899999999999999888774 489999999999843

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=84.74  E-value=1.6  Score=42.23  Aligned_cols=46  Identities=7%  Similarity=0.026  Sum_probs=36.2

Q ss_pred             CCCEEEEEcccCCHHHHHHH-Hc-C-CCeEEEEeCChHHHHHhhHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFAC-LK-G-AGTVHFQDLSAETIRCTTVPNVLA  142 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~-~~-g-a~~V~~tD~~~~vl~~~t~pNv~~  142 (330)
                      ++..|+|+||+.|..++.++ +. + ..+|++.+.++..++. +..|+..
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~-L~~n~~~  274 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT-LQNVLRR  274 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH-HHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH-HHHHHHh
Confidence            67899999999999999876 43 3 3699999999998855 3455554

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=81.12  E-value=1.1  Score=40.78  Aligned_cols=65  Identities=18%  Similarity=0.292  Sum_probs=38.8

Q ss_pred             CCccEEEEeccccCcc-----cHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEEEeecC-C
Q 020125          248 GGYDVILLTEIPYSVT-----SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMT-D  321 (330)
Q Consensus       248 ~~fDvILasD~iY~~~-----~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~~~e~~-d  321 (330)
                      ..||+|+- |- +.+.     -.+.+++.+.++|+ |+|++..     | .   ....+++.+.+.|+ .++.+.... .
T Consensus       172 ~~~D~ifl-D~-fsp~~~p~lw~~~~l~~l~~~L~-pGG~l~t-----y-s---aa~~vrr~L~~aGF-~v~~~~g~~~k  238 (257)
T 2qy6_A          172 QKVDAWFL-DG-FAPAKNPDMWTQNLFNAMARLAR-PGGTLAT-----F-T---SAGFVRRGLQEAGF-TMQKRKGFGRK  238 (257)
T ss_dssp             TCEEEEEE-CS-SCTTTCGGGCCHHHHHHHHHHEE-EEEEEEE-----S-C---CBHHHHHHHHHHTE-EEEEECCSTTC
T ss_pred             CeEEEEEE-CC-CCcccChhhcCHHHHHHHHHHcC-CCcEEEE-----E-e---CCHHHHHHHHHCCC-EEEeCCCCCCC
Confidence            37899887 32 3332     14567778888896 8887552     1 1   12357778888885 555444443 4


Q ss_pred             ccee
Q 020125          322 RDIW  325 (330)
Q Consensus       322 ~~i~  325 (330)
                      |++-
T Consensus       239 r~m~  242 (257)
T 2qy6_A          239 REML  242 (257)
T ss_dssp             CCEE
T ss_pred             CceE
Confidence            5543

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=80.07  E-value=2.3  Score=40.86  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=32.7

Q ss_pred             CEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHH
Q 020125           98 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  133 (330)
Q Consensus        98 k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~  133 (330)
                      .+||||=||+|..++.+..+|...|.+.|+++.+.+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~   38 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAIN   38 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHH
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHH
Confidence            589999999999999999999988999999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	330
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	7e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	2e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	7e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	8e-04
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	0.002
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	0.003

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 22/162 (13%)

Query: 46  KGKVSVADIIG-FTGSEMISSKPDGFLKCWESSIDLVNVLKHEI-----RDGQL------ 93
            G V    I+G F G  + SS    ++    +  D V ++K        +D  +      
Sbjct: 36  WGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMD 95

Query: 94  SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 153
              G  VLE   G G            ++          R  +      + + A++    
Sbjct: 96  INPGDTVLEAGSGSG----------GMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 145

Query: 154 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVT 195
             +S      +    +V F   D       +  +  D   + 
Sbjct: 146 WRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALD 187

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 95  FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134
           F+ K VL++  G G+  +FA   GA  V   + S+ +   
Sbjct: 32  FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 71

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 95  FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLS 128
           F+ K VL++ CG G+  +FA   GA  V   D+S
Sbjct: 37  FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS 70

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 88  IRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLS 128
           I      F+ K VL++ CG G+  +FA   GA  V   D S
Sbjct: 27  IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS 67

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 14/102 (13%)

Query: 46  KGKVSVADIIGFT-GSEMISSKPDGFLKCWESSIDLVNVLKHE-----------IRDGQL 93
            G + + ++     G  + +S          S ID +  +K             I     
Sbjct: 41  LGIIDLNEVFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLD 100

Query: 94  SFRGKRVLELSCGYGLPGIFAC--LKGAGTVHFQDLSAETIR 133
              G R+++   G G         +  +G V   +   E  +
Sbjct: 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAK 142

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 22/96 (22%)

Query: 96  RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQP 155
           RG  VL+L CG G   +     G G  +  D++  +I              AR R     
Sbjct: 24  RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIN------------DARVRARNMK 71

Query: 156 ESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDV 191
                         V F A D       L    + +
Sbjct: 72  ----------RRFKVFFRAQDSYGRHMDLGKEFDVI 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.37
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.35
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.35
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.31
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.27
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.27
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.22
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.22
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.21
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.2
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.19
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.16
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.12
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.08
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.07
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.07
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.01
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.01
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.0
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.0
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.99
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.98
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.97
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.97
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.94
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.92
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.91
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.86
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.83
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.82
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.8
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.79
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.79
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.78
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.77
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.77
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.75
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.74
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.73
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.72
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.71
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.71
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.68
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.63
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.59
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.57
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.56
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.51
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.51
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.48
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.41
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.4
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.39
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.33
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.32
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.29
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.29
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.27
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.16
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.14
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.13
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.07
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.01
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.98
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.81
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.77
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.75
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.69
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.58
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.52
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.38
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.33
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.3
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.28
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.16
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.01
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.99
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.97
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.91
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.85
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.79
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.77
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.77
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.75
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.59
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	96.43
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.87
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	95.67
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	95.55
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	95.01
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	94.95
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	93.28
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	89.65
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	86.33
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	85.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	84.89
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	83.39
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.76
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	82.6
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	82.54
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	82.27
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	82.22
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	80.34

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.37  E-value=4.9e-12  Score=109.55  Aligned_cols=136  Identities=18%  Similarity=0.231  Sum_probs=94.5

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      ++.++..|++.+.        .-++++|||+|||+|..++.++..+ .+|+++|+++.+++. +..|+..|-.       
T Consensus        37 ~d~~t~lLi~~l~--------~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~-a~~n~~~~~l-------   99 (194)
T d1dusa_          37 VDKGTKILVENVV--------VDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKL-AKENIKLNNL-------   99 (194)
T ss_dssp             CCHHHHHHHHHCC--------CCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHH-HHHHHHHTTC-------
T ss_pred             cCHHHHHHHHhCC--------cCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchh-HHHHHHHhCC-------
Confidence            5566666666553        3478999999999999999998865 489999999999865 3455554411       


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                   -..++++..+|+.+.                                                    
T Consensus       100 -------------~~~~i~~~~~d~~~~----------------------------------------------------  114 (194)
T d1dusa_         100 -------------DNYDIRVVHSDLYEN----------------------------------------------------  114 (194)
T ss_dssp             -------------TTSCEEEEECSTTTT----------------------------------------------------
T ss_pred             -------------ccceEEEEEcchhhh----------------------------------------------------
Confidence                         012466655654320                                                    


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCccc-HHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhc
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTS-LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE  308 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~-~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~  308 (330)
                                  ...+.||+|++...+|.... .+.+++.+.++|+ |+|++|+....+     .+.+.+..++++.
T Consensus       115 ------------~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~-----~~~~~~~~~l~~~  173 (194)
T d1dusa_         115 ------------VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVVIQTK-----QGAKSLAKYMKDV  173 (194)
T ss_dssp             ------------CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEEEEST-----HHHHHHHHHHHHH
T ss_pred             ------------hccCCceEEEEcccEEecchhhhhHHHHHHHhcC-cCcEEEEEEeCc-----CCHHHHHHHHHHh
Confidence                        12468999998888776543 5778888888996 899988865443     2456666666653

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.35  E-value=1.3e-11  Score=112.23  Aligned_cols=153  Identities=21%  Similarity=0.263  Sum_probs=105.4

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccC
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ  154 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~  154 (330)
                      +.....+.+.+........-+|.+|||+|||+|..++.++.. |+ +|++.|+++.+++.+     +.+....       
T Consensus        47 a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a-----~~~~~~~-------  113 (282)
T d2o57a1          47 ASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRN-----EEYNNQA-------  113 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhh-----hcccccc-------
Confidence            334445555544333334557899999999999999888764 65 899999999998542     2222111       


Q ss_pred             CCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 020125          155 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS  234 (330)
Q Consensus       155 ~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~  234 (330)
                                .+..++.|..+|+.+++                                                     
T Consensus       114 ----------gl~~~v~~~~~d~~~l~-----------------------------------------------------  130 (282)
T d2o57a1         114 ----------GLADNITVKYGSFLEIP-----------------------------------------------------  130 (282)
T ss_dssp             ----------TCTTTEEEEECCTTSCS-----------------------------------------------------
T ss_pred             ----------ccccccccccccccccc-----------------------------------------------------
Confidence                      24457888888876632                                                     


Q ss_pred             hhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc----------------cccccccH
Q 020125          235 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGFNNAA  298 (330)
Q Consensus       235 ~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~----------------yfGv~gg~  298 (330)
                                ...+.||+|++.++++.......+++-+.++|+ |+|+++++....                .+..-...
T Consensus       131 ----------~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  199 (282)
T d2o57a1         131 ----------CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSL  199 (282)
T ss_dssp             ----------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCH
T ss_pred             ----------ccccccchhhccchhhhccCHHHHHHHHHHhcC-CCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCH
Confidence                      024689999999999988888999999999997 899988863211                01111246


Q ss_pred             HHHHHhhhhcCceeEEE
Q 020125          299 RHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       299 ~~F~~~vee~G~f~~~~  315 (330)
                      ..+.+++++.|+-..+.
T Consensus       200 ~~~~~~l~~~Gf~~i~~  216 (282)
T d2o57a1         200 GLYRSLAKECGLVTLRT  216 (282)
T ss_dssp             HHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHHHcCCceEEE
Confidence            77788899999744443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=4.5e-12  Score=115.59  Aligned_cols=135  Identities=20%  Similarity=0.199  Sum_probs=97.4

Q ss_pred             cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      .-+.+..+.++|.+.      ..+|++|||+|||+|..++++++.|+ +|+++|+++.+++. ++.|+.+|.        
T Consensus       103 ~H~TT~l~l~~l~~~------~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~-A~~na~~n~--------  166 (254)
T d2nxca1         103 HHETTRLALKALARH------LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQ-AEANAKRNG--------  166 (254)
T ss_dssp             CSHHHHHHHHHHHHH------CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHH-HHHHHHHTT--------
T ss_pred             ccchhhHHHHHHHhh------cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHH-HHHHHHHcC--------
Confidence            456788888888765      35799999999999999999999987 79999999999965 345555441        


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                   +  ++++..+|+...                                                    
T Consensus       167 -------------~--~~~~~~~d~~~~----------------------------------------------------  179 (254)
T d2nxca1         167 -------------V--RPRFLEGSLEAA----------------------------------------------------  179 (254)
T ss_dssp             -------------C--CCEEEESCHHHH----------------------------------------------------
T ss_pred             -------------C--ceeEEecccccc----------------------------------------------------
Confidence                         1  234444443210                                                    


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCce
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF  311 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f  311 (330)
                                  ...++||+|++.   +....+..++..+.++|+ |+|++++.--.     ......+.+.+++.|+-
T Consensus       180 ------------~~~~~fD~V~an---i~~~~l~~l~~~~~~~Lk-pGG~lilSgil-----~~~~~~v~~~~~~~Gf~  237 (254)
T d2nxca1         180 ------------LPFGPFDLLVAN---LYAELHAALAPRYREALV-PGGRALLTGIL-----KDRAPLVREAMAGAGFR  237 (254)
T ss_dssp             ------------GGGCCEEEEEEE---CCHHHHHHHHHHHHHHEE-EEEEEEEEEEE-----GGGHHHHHHHHHHTTCE
T ss_pred             ------------ccccccchhhhc---cccccHHHHHHHHHHhcC-CCcEEEEEecc-----hhhHHHHHHHHHHCCCE
Confidence                        123589999985   334557788888989997 89998875321     12467888889999863

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.31  E-value=5.6e-12  Score=110.17  Aligned_cols=114  Identities=16%  Similarity=0.165  Sum_probs=85.9

Q ss_pred             HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCC
Q 020125           80 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL  159 (330)
Q Consensus        80 La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~  159 (330)
                      |++.|...     ..-++++|||+|||+|..++.++..|+ +|+++|+++.+++.     .+.+....            
T Consensus         4 ~~~ll~~~-----~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~-----A~~~~~~~------------   60 (231)
T d1vl5a_           4 LAKLMQIA-----ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKV-----ARAFIEGN------------   60 (231)
T ss_dssp             HHHHHHHH-----TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHH-----HHHHHHHT------------
T ss_pred             HHHHHHhc-----CCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhh-----hhhccccc------------
Confidence            45555543     244678999999999999999998886 89999999999854     23333211            


Q ss_pred             CCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhh
Q 020125          160 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWER  239 (330)
Q Consensus       160 ~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~  239 (330)
                            -.+++.|..+|+.+.+                                                          
T Consensus        61 ------~~~~i~~~~~d~~~l~----------------------------------------------------------   76 (231)
T d1vl5a_          61 ------GHQQVEYVQGDAEQMP----------------------------------------------------------   76 (231)
T ss_dssp             ------TCCSEEEEECCC-CCC----------------------------------------------------------
T ss_pred             ------cccccccccccccccc----------------------------------------------------------
Confidence                  0136777777766532                                                          


Q ss_pred             hcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          240 ASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       240 ~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                           ...+.||+|++.++++.......+++-+.++|+ |+|++++.
T Consensus        77 -----~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~  117 (231)
T d1vl5a_          77 -----FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLK-KGGQLLLV  117 (231)
T ss_dssp             -----SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             -----ccccccccccccccccccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence                 024689999999999999889999999999997 99988875

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.27  E-value=4.9e-12  Score=106.16  Aligned_cols=110  Identities=21%  Similarity=0.268  Sum_probs=82.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .++|++|||||||||..|+.|+..||++|++.|.++.+++.     ++.|+..+                 .+..+++++
T Consensus        12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~-----~~~n~~~~-----------------~~~~~~~ii   69 (152)
T d2esra1          12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAI-----IQDNIIMT-----------------KAENRFTLL   69 (152)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHH-----HHHHHHTT-----------------TCGGGEEEE
T ss_pred             hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhh-----hhhhhhhc-----------------ccccchhhh
Confidence            57899999999999999999999999999999999999854     44454422                 122356766


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|+...   +                                                           .....+||+|
T Consensus        70 ~~D~~~~---l-----------------------------------------------------------~~~~~~fDiI   87 (152)
T d2esra1          70 KMEAERA---I-----------------------------------------------------------DCLTGRFDLV   87 (152)
T ss_dssp             CSCHHHH---H-----------------------------------------------------------HHBCSCEEEE
T ss_pred             ccccccc---c-----------------------------------------------------------ccccccccee
Confidence            6664321   0                                                           0123689999


Q ss_pred             EEeccccCcccHHHHHHHHHH--HcCCCCcEEEEEecc
Q 020125          254 LLTEIPYSVTSLKKLYLLIKK--CLRPPYGVVYLATKK  289 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~--~L~~p~Gv~~lA~k~  289 (330)
                      ++ |-.|....+...++.|..  +|+ ++|++++-..+
T Consensus        88 f~-DPPy~~~~~~~~l~~i~~~~~L~-~~g~iiiE~~~  123 (152)
T d2esra1          88 FL-DPPYAKETIVATIEALAAKNLLS-EQVMVVCETDK  123 (152)
T ss_dssp             EE-CCSSHHHHHHHHHHHHHHTTCEE-EEEEEEEEEET
T ss_pred             Ee-chhhccchHHHHHHHHHHCCCcC-CCeEEEEEeCC
Confidence            88 899998888888888875  354 88999886544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.27  E-value=2.2e-11  Score=107.47  Aligned_cols=105  Identities=18%  Similarity=0.211  Sum_probs=81.5

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .-+|.+|||+|||+|..++.++..++ +|++.|+++.+++.. +.+...|.                     + .++.+.
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A-~~~~~~~~---------------------~-~~~~~~   69 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVA-SSFAQEKG---------------------V-ENVRFQ   69 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHH-HHHHHHHT---------------------C-CSEEEE
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhh-hhhhcccc---------------------c-cccccc
Confidence            45789999999999999999998875 899999999998652 22222221                     1 247777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.+                                                               ...++||+|
T Consensus        70 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v   86 (234)
T d1xxla_          70 QGTAESLP---------------------------------------------------------------FPDDSFDII   86 (234)
T ss_dssp             ECBTTBCC---------------------------------------------------------------SCTTCEEEE
T ss_pred             cccccccc---------------------------------------------------------------cccccccee
Confidence            77654421                                                               124689999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      ++..++........+++-+.++|+ |+|+++++
T Consensus        87 ~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~~~~~  118 (234)
T d1xxla_          87 TCRYAAHHFSDVRKAVREVARVLK-QDGRFLLV  118 (234)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             eeeceeecccCHHHHHHHHHHeeC-CCcEEEEE
Confidence            999999988889999999999997 89998885

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=1.6e-11  Score=114.24  Aligned_cols=105  Identities=27%  Similarity=0.290  Sum_probs=77.6

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      ..++|++|||+|||+|+.+++|+++||++|++.|.++.+..  ...|+..|.                     +..+|.+
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~--a~~~~~~n~---------------------~~~~v~~   86 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY--AVKIVKANK---------------------LDHVVTI   86 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHH--HHHHHHHTT---------------------CTTTEEE
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhh--hhhHHHHhC---------------------Cccccce
Confidence            35789999999999999999999999999999999986542  234444331                     3346777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..++..+.+                                                               ....+||+
T Consensus        87 ~~~~~~~~~---------------------------------------------------------------~~~~~~D~  103 (316)
T d1oria_          87 IKGKVEEVE---------------------------------------------------------------LPVEKVDI  103 (316)
T ss_dssp             EESCTTTCC---------------------------------------------------------------CSSSCEEE
T ss_pred             EeccHHHcc---------------------------------------------------------------cccceeEE
Confidence            776644421                                                               12368999


Q ss_pred             EEEe---ccccCcccHHHHHHHHHHHcCCCCcEEE
Q 020125          253 ILLT---EIPYSVTSLKKLYLLIKKCLRPPYGVVY  284 (330)
Q Consensus       253 ILas---D~iY~~~~~~~L~~~i~~~L~~p~Gv~~  284 (330)
                      |++.   ..++.+..++.++..++++|+ |+|+++
T Consensus       104 ivs~~~~~~l~~e~~~~~~l~~~~r~Lk-p~G~ii  137 (316)
T d1oria_         104 IISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIF  137 (316)
T ss_dssp             EEECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred             EeeeeeeeeeccHHHHHHHHHHHHhcCC-CCeEEE
Confidence            9763   445666789999999999997 778765

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.22  E-value=7.6e-11  Score=103.77  Aligned_cols=111  Identities=20%  Similarity=0.167  Sum_probs=80.2

Q ss_pred             HHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCC
Q 020125           81 VNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLT  160 (330)
Q Consensus        81 a~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~  160 (330)
                      .+|+.+...   ..+++++|||+|||+|.....++..|. +|+++|+++++++.+     +.+                 
T Consensus         8 ~~~~~~~~~---~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a-----~~~-----------------   61 (225)
T d2p7ia1           8 HPFMVRAFT---PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHA-----QGR-----------------   61 (225)
T ss_dssp             HHHHHHHHG---GGCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHH-----HHH-----------------
T ss_pred             HHHHHHHhh---hhCCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhh-----hcc-----------------
Confidence            355555542   357899999999999999999888876 799999999987431     111                 


Q ss_pred             CcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhh
Q 020125          161 PSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERA  240 (330)
Q Consensus       161 ~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~  240 (330)
                           ....+.+..+++...                                                            
T Consensus        62 -----~~~~~~~~~~~~~~~------------------------------------------------------------   76 (225)
T d2p7ia1          62 -----LKDGITYIHSRFEDA------------------------------------------------------------   76 (225)
T ss_dssp             -----SCSCEEEEESCGGGC------------------------------------------------------------
T ss_pred             -----ccccccccccccccc------------------------------------------------------------
Confidence                 112455655554321                                                            


Q ss_pred             cccccCCCCccEEEEeccccCcccHHHHHHHHH-HHcCCCCcEEEEEe
Q 020125          241 SEADQGEGGYDVILLTEIPYSVTSLKKLYLLIK-KCLRPPYGVVYLAT  287 (330)
Q Consensus       241 ~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~-~~L~~p~Gv~~lA~  287 (330)
                          ...++||+|++.+++...+....+++-+. ++|+ |+|++++..
T Consensus        77 ----~~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk-~gG~l~i~~  119 (225)
T d2p7ia1          77 ----QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLA-EGGRLFLVC  119 (225)
T ss_dssp             ----CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred             ----ccccccccccccceeEecCCHHHHHHHHHHHhcC-CCceEEEEe
Confidence                12368999999999988888777776665 6786 899999875

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=4.6e-11  Score=106.24  Aligned_cols=146  Identities=17%  Similarity=0.092  Sum_probs=104.0

Q ss_pred             chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125           74 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS  152 (330)
Q Consensus        74 W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~  152 (330)
                      ++.+-...+.|.+..    ...+|++|||+|||+|-..+.+++. |+ +|++.|.++.+++..     +.|....     
T Consensus        15 ~p~~~~~~~~l~~~~----~l~pg~~VLDiGCG~G~~~~~la~~~~~-~v~GvD~s~~~~~~a-----r~~~~~~-----   79 (245)
T d1nkva_          15 NPFTEEKYATLGRVL----RMKPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQA-----KRRAEEL-----   79 (245)
T ss_dssp             SSCCHHHHHHHHHHT----CCCTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHH-----HHHHHHT-----
T ss_pred             CCCCHHHHHHHHHHc----CCCCCCEEEEEcCCCCHHHHHHHHhcCC-EEEEEecccchhhHH-----HHHHHHh-----
Confidence            455556666676653    3567999999999999888887764 55 899999999998552     2232211     


Q ss_pred             cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125          153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS  232 (330)
Q Consensus       153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls  232 (330)
                                  .+..+++|..+|+.+..                                                   
T Consensus        80 ------------gl~~~v~~~~~d~~~~~---------------------------------------------------   96 (245)
T d1nkva_          80 ------------GVSERVHFIHNDAAGYV---------------------------------------------------   96 (245)
T ss_dssp             ------------TCTTTEEEEESCCTTCC---------------------------------------------------
T ss_pred             ------------hccccchhhhhHHhhcc---------------------------------------------------
Confidence                        13456888777765421                                                   


Q ss_pred             CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc----------------ccccc
Q 020125          233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----------------VGFNN  296 (330)
Q Consensus       233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y----------------fGv~g  296 (330)
                                   ..++||+|++.++++.....+.+++-+.+.|+ |+|++++......                ...-.
T Consensus        97 -------------~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~Lk-PGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (245)
T d1nkva_          97 -------------ANEKCDVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFL  162 (245)
T ss_dssp             -------------CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSC
T ss_pred             -------------ccCceeEEEEEehhhccCCHHHHHHHHHHHcC-cCcEEEEEeccccCCCChHHHHHHhccCCCcccC
Confidence                         24689999999999999999999999999997 8999888632100                00012


Q ss_pred             cHHHHHHhhhhcCce
Q 020125          297 AARHLRSLVDEEGIF  311 (330)
Q Consensus       297 g~~~F~~~vee~G~f  311 (330)
                      ....+...+++.|+-
T Consensus       163 ~~~~~~~~~~~aG~~  177 (245)
T d1nkva_         163 TLPGLVGAFDDLGYD  177 (245)
T ss_dssp             CHHHHHHHHHTTTBC
T ss_pred             CHHHHHHHHHHcCCE
Confidence            456788889998863

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.3e-11  Score=102.88  Aligned_cols=149  Identities=15%  Similarity=0.200  Sum_probs=98.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ...+++|||+|||+|..+..++..+..+|++.|+++++++.     .+.|....                  -...++|.
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~-----ak~~~~~~------------------~~~~~~f~  114 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQ-----AKTYLGEE------------------GKRVRNYF  114 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHH-----HHHHTGGG------------------GGGEEEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhc-----cccccccc------------------cccccccc
Confidence            45678999999999998887766667799999999999854     22222110                  01245666


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+.+                                                               ...+.||+|
T Consensus       115 ~~d~~~~~---------------------------------------------------------------~~~~~fD~I  131 (222)
T d2ex4a1         115 CCGLQDFT---------------------------------------------------------------PEPDSYDVI  131 (222)
T ss_dssp             ECCGGGCC---------------------------------------------------------------CCSSCEEEE
T ss_pred             cccccccc---------------------------------------------------------------ccccccccc
Confidence            66643321                                                               134789999


Q ss_pred             EEeccccCccc--HHHHHHHHHHHcCCCCcEEEEEecccc----cc-----ccccHHHHHHhhhhcCceeEEE--EeecC
Q 020125          254 LLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKNY----VG-----FNNAARHLRSLVDEEGIFGAHL--IKEMT  320 (330)
Q Consensus       254 LasD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA~k~~y----fG-----v~gg~~~F~~~vee~G~f~~~~--~~e~~  320 (330)
                      ++.+++..-..  ...+++-++++|+ |+|.+++......    +.     ..-....+.+++++.|+-..+.  ....+
T Consensus       132 ~~~~~l~h~~~~~~~~~l~~i~~~Lk-~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~fP  210 (222)
T d2ex4a1         132 WIQWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLP  210 (222)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred             ccccccccchhhhhhhHHHHHHHhcC-CcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCCCC
Confidence            99999987643  4568888888997 8898887632211    11     1126789999999999733332  22333


Q ss_pred             C--cceeeeec
Q 020125          321 D--RDIWKFFL  329 (330)
Q Consensus       321 d--~~i~~~~~  329 (330)
                      +  ..||.|-+
T Consensus       211 ~~~~~v~~~al  221 (222)
T d2ex4a1         211 DEIYHVYSFAL  221 (222)
T ss_dssp             TTSCEEEEEEE
T ss_pred             cchhEEEEEEe
Confidence            3  44666644

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6.4e-11  Score=109.55  Aligned_cols=40  Identities=35%  Similarity=0.473  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHH
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI  132 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl  132 (330)
                      ..++|++|||+|||+|+.+++|+++||++|++.|.++.++
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~   71 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY   71 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH
Confidence            5689999999999999999999999999999999999765

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=7.3e-11  Score=110.15  Aligned_cols=104  Identities=22%  Similarity=0.311  Sum_probs=75.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .++|++|||+|||+|+++++|+++||++|++.|.++. ++. .+.++..|                     .+..++.+.
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~-~~~-a~~~~~~~---------------------~~~~~i~~i   92 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEM-AKELVELN---------------------GFSDKITLL   92 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTH-HHH-HHHHHHHT---------------------TCTTTEEEE
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHH-HHH-HHHHHHHh---------------------CccccceEE
Confidence            5789999999999999999999999999999999874 322 22333322                     123466766


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .++..+.+                                                               ....+||+|
T Consensus        93 ~~~~~~l~---------------------------------------------------------------~~~~~~D~i  109 (328)
T d1g6q1_          93 RGKLEDVH---------------------------------------------------------------LPFPKVDII  109 (328)
T ss_dssp             ESCTTTSC---------------------------------------------------------------CSSSCEEEE
T ss_pred             Eeehhhcc---------------------------------------------------------------CcccceeEE
Confidence            66644321                                                               124689999


Q ss_pred             EEecc---ccCcccHHHHHHHHHHHcCCCCcEEE
Q 020125          254 LLTEI---PYSVTSLKKLYLLIKKCLRPPYGVVY  284 (330)
Q Consensus       254 LasD~---iY~~~~~~~L~~~i~~~L~~p~Gv~~  284 (330)
                      ++.-+   +......+.++..++++|+ |+|+++
T Consensus       110 ~se~~~~~~~~e~~~~~~~~a~~r~Lk-pgG~ii  142 (328)
T d1g6q1_         110 ISEWMGYFLLYESMMDTVLYARDHYLV-EGGLIF  142 (328)
T ss_dssp             EECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred             EEEecceeeccchhHHHHHHHHHhccC-CCeEEE
Confidence            98444   4566778888998999997 778765

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=1.6e-10  Score=99.73  Aligned_cols=38  Identities=32%  Similarity=0.384  Sum_probs=34.6

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ++.+|||+|||+|..++.+++.|+ +|+++|+++++++.
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~   74 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRK   74 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhh
Confidence            567999999999999999999887 89999999999865

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.08  E-value=3.3e-10  Score=97.27  Aligned_cols=122  Identities=18%  Similarity=0.172  Sum_probs=85.5

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ..+|.+|||+|||+|..++.+++.+ .+|++.|.++++++. .+.|+..|                     .+..++++.
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~-a~~n~~~~---------------------gl~~~v~~~   87 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAIST-TEMNLQRH---------------------GLGDNVTLM   87 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHH-HHHHHHHT---------------------TCCTTEEEE
T ss_pred             CCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHH-HHHHHHHc---------------------CCCcceEEE
Confidence            4589999999999999999998764 599999999999865 33444433                     134567777


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|..+..                                                               .....||+|
T Consensus        88 ~gda~~~~---------------------------------------------------------------~~~~~~D~v  104 (186)
T d1l3ia_          88 EGDAPEAL---------------------------------------------------------------CKIPDIDIA  104 (186)
T ss_dssp             ESCHHHHH---------------------------------------------------------------TTSCCEEEE
T ss_pred             ECchhhcc---------------------------------------------------------------cccCCcCEE
Confidence            77632210                                                               123579999


Q ss_pred             EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCc
Q 020125          254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI  310 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~  310 (330)
                      +......   ..+.+++.+.+.|+ |+|.+++..-.     ..+...+++.+++.|+
T Consensus       105 ~~~~~~~---~~~~~~~~~~~~Lk-pgG~lvi~~~~-----~e~~~~~~~~l~~~~~  152 (186)
T d1l3ia_         105 VVGGSGG---ELQEILRIIKDKLK-PGGRIIVTAIL-----LETKFEAMECLRDLGF  152 (186)
T ss_dssp             EESCCTT---CHHHHHHHHHHTEE-EEEEEEEEECB-----HHHHHHHHHHHHHTTC
T ss_pred             EEeCccc---cchHHHHHHHHHhC-cCCEEEEEeec-----cccHHHHHHHHHHcCC
Confidence            9887653   35677888888896 88887654321     1245667777777764

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=7.2e-10  Score=97.62  Aligned_cols=40  Identities=35%  Similarity=0.540  Sum_probs=35.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .-++++|||+|||+|..++.+++.|+ +|+++|.++.|++.
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~   78 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRV   78 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccc
Confidence            34678999999999999999999987 89999999999865

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=3.3e-10  Score=106.03  Aligned_cols=126  Identities=18%  Similarity=0.183  Sum_probs=87.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG  175 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g  175 (330)
                      +|++|||+|||+|..++.+++.||++|+++|+++.+++. ...|+.+|.                     +..+++|..+
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~-a~~N~~~ng---------------------l~~~~~~~~~  202 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIET-AKENAKLNG---------------------VEDRMKFIVG  202 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHTT---------------------CGGGEEEEES
T ss_pred             CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHH-HHHHHHHcC---------------------CCccceeeec
Confidence            589999999999999999999999999999999999865 355666552                     2235666666


Q ss_pred             ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125          176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL  255 (330)
Q Consensus       176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa  255 (330)
                      |--+                                                         |-.  .......+||+|+ 
T Consensus       203 d~~~---------------------------------------------------------~~~--~~~~~~~~fD~Vi-  222 (324)
T d2as0a2         203 SAFE---------------------------------------------------------EME--KLQKKGEKFDIVV-  222 (324)
T ss_dssp             CHHH---------------------------------------------------------HHH--HHHHTTCCEEEEE-
T ss_pred             hhhh---------------------------------------------------------hhH--HHHhccCCCCchh-
Confidence            5211                                                         000  0011346899999 


Q ss_pred             eccccCccc----------HHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhc
Q 020125          256 TEIPYSVTS----------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE  308 (330)
Q Consensus       256 sD~iY~~~~----------~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~  308 (330)
                      .|..+....          +..|+....++|+ |+|++++++-.+.+    +..+|++.+.+.
T Consensus       223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~-pGG~lv~~s~s~~~----~~~~f~~~v~~a  280 (324)
T d2as0a2         223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK-DGGILVTCSCSQHV----DLQMFKDMIIAA  280 (324)
T ss_dssp             ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE-EEEEEEEEECCTTS----CHHHHHHHHHHH
T ss_pred             cCCccccCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEEeCCccC----CHHHHHHHHHHH
Confidence            566555332          4445555555675 89998888766654    468999888653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.01  E-value=1.9e-09  Score=94.61  Aligned_cols=42  Identities=24%  Similarity=0.363  Sum_probs=38.7

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..+.|++|||+|||+|..++.+++.|+++|+++|+++.+++.
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~   86 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET   86 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHH
Confidence            467999999999999999999999999999999999998854

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.01  E-value=7.7e-10  Score=95.19  Aligned_cols=105  Identities=21%  Similarity=0.307  Sum_probs=75.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      ..++.+|||+|||+|...+.++..|. +|+++|+++.+++.+     +.+....                 .+ ..+.+.
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a-----~~~~~~~-----------------~~-~~~~~~   83 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANL-----ERIKAAE-----------------GL-DNLQTD   83 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHHHHT-----------------TC-TTEEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHH-----HHHhhhc-----------------cc-cchhhh
Confidence            34567999999999999999999987 899999999998652     2232210                 11 134444


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|....                                                                ...++||+|
T Consensus        84 ~~d~~~~----------------------------------------------------------------~~~~~fD~I   99 (198)
T d2i6ga1          84 LVDLNTL----------------------------------------------------------------TFDGEYDFI   99 (198)
T ss_dssp             ECCTTTC----------------------------------------------------------------CCCCCEEEE
T ss_pred             heecccc----------------------------------------------------------------cccccccEE
Confidence            4443221                                                                124689999


Q ss_pred             EEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          254 LLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       254 LasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                      ++..+++..  .....+++-+.++|+ |+|++++..
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~~~~~~  134 (198)
T d2i6ga1         100 LSTVVMMFLEAQTIPGLIANMQRCTK-PGGYNLIVA  134 (198)
T ss_dssp             EEESCGGGSCTTHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             EEeeeeecCCHHHHHHHHHHHHHHcC-CCcEEEEEE
Confidence            999999964  457788888998997 889887754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=1.1e-09  Score=95.49  Aligned_cols=39  Identities=31%  Similarity=0.318  Sum_probs=35.3

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..+++|||+|||+|..+..++..|+ +|+++|+++.+++.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~   79 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEV   79 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCchhcccccccce-EEEEeecccccccc
Confidence            3678999999999999999999987 89999999999854

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=4.1e-09  Score=92.10  Aligned_cols=42  Identities=29%  Similarity=0.331  Sum_probs=38.8

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++|++|||+|||+|..++.++..|+.+|++.|+++.+++.
T Consensus        43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~   84 (201)
T d1wy7a1          43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV   84 (201)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHH
Confidence            467999999999999999999999999999999999998854

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.3e-09  Score=98.42  Aligned_cols=75  Identities=16%  Similarity=0.203  Sum_probs=53.7

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCC
Q 020125           77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQP  155 (330)
Q Consensus        77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~  155 (330)
                      +..|+++.....     .-++.+|||||||+|..++.++. ....+|+++|+++.+++. +..|+..|.           
T Consensus        94 TE~lv~~~l~~~-----~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~-A~~Na~~~~-----------  156 (274)
T d2b3ta1          94 TECLVEQALARL-----PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSL-AQRNAQHLA-----------  156 (274)
T ss_dssp             HHHHHHHHHHHS-----CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHH-HHHHHHHHT-----------
T ss_pred             hhhhhhhHhhhh-----cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhH-HHHHHHHhC-----------
Confidence            345566555442     23567899999999999998775 445699999999999965 355655441           


Q ss_pred             CCCCCCcccCCCCceeeeecccCC
Q 020125          156 ESSLTPSRQTLAPSVHFYAGDWEE  179 (330)
Q Consensus       156 ~s~~~~~~~~l~~~v~~~~gdW~~  179 (330)
                                + .+|+|+.+||-+
T Consensus       157 ----------~-~~v~~~~~d~~~  169 (274)
T d2b3ta1         157 ----------I-KNIHILQSDWFS  169 (274)
T ss_dssp             ----------C-CSEEEECCSTTG
T ss_pred             ----------c-ccceeeeccccc
Confidence                      2 258888888755

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.98  E-value=1.1e-09  Score=97.01  Aligned_cols=40  Identities=28%  Similarity=0.268  Sum_probs=36.3

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++++|||+|||+|..++.+++.|. +|++.|.+++||+.
T Consensus        35 ~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~   74 (246)
T d1y8ca_          35 NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSE   74 (246)
T ss_dssp             TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHH
T ss_pred             CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhh
Confidence            45678999999999999999999987 89999999999865

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.97  E-value=1.1e-09  Score=93.36  Aligned_cols=57  Identities=25%  Similarity=0.262  Sum_probs=45.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .|..+|.+.      .-+|++|||+|||+|..|+.|+..|+ +|++.|.|+.+++. +..|++.|
T Consensus        30 ~lf~~l~~~------~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~-~~~N~~~~   86 (171)
T d1ws6a1          30 ALFDYLRLR------YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRL-LKENVRRT   86 (171)
T ss_dssp             HHHHHHHHH------CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHH-HHHHHHHH
T ss_pred             HHHHHhhcc------ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhh-hhHHHHhh
Confidence            445556543      34789999999999999999999998 78999999999965 35565554

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=4.6e-09  Score=96.29  Aligned_cols=141  Identities=13%  Similarity=0.095  Sum_probs=93.5

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccC
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ  154 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~  154 (330)
                      +.....+.+.+..    ..-+|.+|||+|||.|-+++.+++. |+ +|++.|++++.++.+     +.....        
T Consensus        36 AQ~~k~~~~~~~l----~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a-----~~~~~~--------   97 (280)
T d2fk8a1          36 AQYAKVDLNLDKL----DLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARC-----EQVLAS--------   97 (280)
T ss_dssp             HHHHHHHHHHTTS----CCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHHHHT--------
T ss_pred             HHHHHHHHHHHHc----CCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHH-----HHHHHh--------
Confidence            3344445555442    3567999999999999999888865 66 899999999987442     111110        


Q ss_pred             CCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 020125          155 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS  234 (330)
Q Consensus       155 ~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~  234 (330)
                               ..+...+.+...|..                                                        
T Consensus        98 ---------~~l~~~~~~~~~d~~--------------------------------------------------------  112 (280)
T d2fk8a1          98 ---------IDTNRSRQVLLQGWE--------------------------------------------------------  112 (280)
T ss_dssp             ---------SCCSSCEEEEESCGG--------------------------------------------------------
T ss_pred             ---------hccccchhhhhhhhh--------------------------------------------------------
Confidence                     012223332221110                                                        


Q ss_pred             hhhhhhcccccCCCCccEEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEe-------------------------
Q 020125          235 RAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLAT-------------------------  287 (330)
Q Consensus       235 ~~w~~~~~~~~~~~~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~-------------------------  287 (330)
                                ...++||.|++.+++.+.  ..++.+++.|.++|+ |+|+++|-+                         
T Consensus       113 ----------~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lk-pgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~d  181 (280)
T d2fk8a1         113 ----------DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQSSVSYHPYEMAARGKKLSFETARFIK  181 (280)
T ss_dssp             ----------GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----------hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccC-CCceEEEEEeeccCcchhhhcccccccccccccc
Confidence                      124689999999999887  567899999999997 899998843                         


Q ss_pred             --cccccc--ccccHHHHHHhhhhcCc
Q 020125          288 --KKNYVG--FNNAARHLRSLVDEEGI  310 (330)
Q Consensus       288 --k~~yfG--v~gg~~~F~~~vee~G~  310 (330)
                        .++-|.  .-.+..++.+.+++.|+
T Consensus       182 fI~kyifPgg~lPS~~~l~~~~e~aGf  208 (280)
T d2fk8a1         182 FIVTEIFPGGRLPSTEMMVEHGEKAGF  208 (280)
T ss_dssp             HHHHHTSTTCCCCCHHHHHHHHHHTTC
T ss_pred             hhhhhccCCCcccchHhhhhhHHhhcc
Confidence              112222  12367888888988885

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.94  E-value=5.2e-09  Score=95.28  Aligned_cols=117  Identities=15%  Similarity=0.215  Sum_probs=83.1

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  156 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~  156 (330)
                      +..++|.+.+   ....++.+|||+|||+|..++.++.. + ..+|+++|+++.+++.     .+.|...          
T Consensus        13 d~l~~l~~~~---~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~-----a~~~~~~----------   74 (281)
T d2gh1a1          13 DYVSFLVNTV---WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE-----ARELFRL----------   74 (281)
T ss_dssp             HHHHHHHHTT---SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHH-----HHHHHHS----------
T ss_pred             HHHHHHHHHH---hccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhh-----hhccccc----------
Confidence            3456666543   12347789999999999999888763 2 2489999999999854     2333321          


Q ss_pred             CCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 020125          157 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA  236 (330)
Q Consensus       157 s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~  236 (330)
                               ...+++|..+|..+.+                                                       
T Consensus        75 ---------~~~~~~f~~~d~~~~~-------------------------------------------------------   90 (281)
T d2gh1a1          75 ---------LPYDSEFLEGDATEIE-------------------------------------------------------   90 (281)
T ss_dssp             ---------SSSEEEEEESCTTTCC-------------------------------------------------------
T ss_pred             ---------cccccccccccccccc-------------------------------------------------------
Confidence                     1235666666533311                                                       


Q ss_pred             hhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125          237 WERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT  287 (330)
Q Consensus       237 w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~  287 (330)
                               ...+||+|++..++........+++-+.+.|+ |+|.+++..
T Consensus        91 ---------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~lii~~  131 (281)
T d2gh1a1          91 ---------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFE  131 (281)
T ss_dssp             ---------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             ---------ccCCceEEEEehhhhcCCCHHHHHHHHHHHcC-cCcEEEEEE
Confidence                     12479999999999998888899999999997 889887754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.92  E-value=8e-09  Score=92.95  Aligned_cols=127  Identities=17%  Similarity=0.243  Sum_probs=86.8

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      -.+++|||+|||+|..+..++..+..+|++.|.++.+++.+     +.+..                    -.+.++|+.
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a-----~~~~~--------------------~~~~~~~~~  146 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEA-----KRELA--------------------GMPVGKFIL  146 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHH-----HHHTT--------------------TSSEEEEEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhh-----hcccc--------------------ccccceeEE
Confidence            46779999999999998876655566899999999998542     21211                    012466666


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|..+.+                                                               ...++||+|+
T Consensus       147 ~d~~~~~---------------------------------------------------------------~~~~~fD~I~  163 (254)
T d1xtpa_         147 ASMETAT---------------------------------------------------------------LPPNTYDLIV  163 (254)
T ss_dssp             SCGGGCC---------------------------------------------------------------CCSSCEEEEE
T ss_pred             ccccccc---------------------------------------------------------------cCCCccceEE
Confidence            5532210                                                               1346899999


Q ss_pred             EeccccCccc--HHHHHHHHHHHcCCCCcEEEEEeccc---cc-------cccccHHHHHHhhhhcCc
Q 020125          255 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN---YV-------GFNNAARHLRSLVDEEGI  310 (330)
Q Consensus       255 asD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA~k~~---yf-------Gv~gg~~~F~~~vee~G~  310 (330)
                      +..++++-..  ...+++-+++.|+ |+|.+++.....   .+       .+..+...|.+++++.|+
T Consensus       164 ~~~vl~hl~d~d~~~~l~~~~~~Lk-pgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf  230 (254)
T d1xtpa_         164 IQWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGV  230 (254)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTC
T ss_pred             eeccccccchhhhHHHHHHHHHhcC-CCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCC
Confidence            9999987644  4466777777886 889888753211   11       122357889999999996

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.91  E-value=2e-09  Score=96.06  Aligned_cols=107  Identities=24%  Similarity=0.147  Sum_probs=75.2

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      -++++|||+|||+|.....++..|.++|+++|+++++|+.+     ......   .              ....++.|..
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A-----~~r~~~---~--------------~~~~~v~f~~   80 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDA-----RVRARN---M--------------KRRFKVFFRA   80 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHH-----HHHHHT---S--------------CCSSEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHH-----HHHHHh---c--------------CCCcceEEEE
Confidence            47899999999999887778888888999999999998552     111110   0              1224677766


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|-...+                                                              .....+||+|+
T Consensus        81 ~D~~~~~--------------------------------------------------------------~~~~~~fD~V~   98 (252)
T d1ri5a_          81 QDSYGRH--------------------------------------------------------------MDLGKEFDVIS   98 (252)
T ss_dssp             SCTTTSC--------------------------------------------------------------CCCSSCEEEEE
T ss_pred             cchhhhc--------------------------------------------------------------ccccccceEEE
Confidence            6632211                                                              01246899999


Q ss_pred             EeccccCc----ccHHHHHHHHHHHcCCCCcEEEEE
Q 020125          255 LTEIPYSV----TSLKKLYLLIKKCLRPPYGVVYLA  286 (330)
Q Consensus       255 asD~iY~~----~~~~~L~~~i~~~L~~p~Gv~~lA  286 (330)
                      +..++...    +....+++.+.++|+ |+|++++.
T Consensus        99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk-~gG~~i~~  133 (252)
T d1ri5a_          99 SQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIMT  133 (252)
T ss_dssp             EESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEE
T ss_pred             EcceeeecCCCHHHHHHHHHHHhceeC-CCCEEEEE
Confidence            99988643    445677888888897 89998775

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.86  E-value=1.3e-08  Score=92.40  Aligned_cols=48  Identities=19%  Similarity=0.193  Sum_probs=41.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      -+|.+|||+|||+|..++.+++.|+.+|++.|.|+.+++. ...|+..|
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~-~~~N~~~n  153 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF-LVENIHLN  153 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHH-HHHHHHHT
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHH-HHHHHHHh
Confidence            3689999999999999999999998899999999999866 35666655

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=4.9e-08  Score=89.67  Aligned_cols=149  Identities=16%  Similarity=0.168  Sum_probs=100.9

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH-HcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhcc
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR  153 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~-~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~  153 (330)
                      ++...+.+++.+..    ..-+|.+|||+|||.|-+++.++ ..|+ +|++.+++++-++.     .+.....       
T Consensus        45 eAQ~~k~~~~~~~l----~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~-----a~~~~~~-------  107 (285)
T d1kpga_          45 EAQIAKIDLALGKL----GLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANH-----VQQLVAN-------  107 (285)
T ss_dssp             HHHHHHHHHHHTTT----TCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH-----HHHHHHT-------
T ss_pred             HHHHHHHHHHHHHc----CCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHH-----HHHHHHh-------
Confidence            44566667776653    45689999999999999999755 5676 99999999987643     2222211       


Q ss_pred             CCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 020125          154 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG  233 (330)
Q Consensus       154 ~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~  233 (330)
                                ..+..+|++..+|+..                                                      
T Consensus       108 ----------~g~~~~v~~~~~d~~~------------------------------------------------------  123 (285)
T d1kpga_         108 ----------SENLRSKRVLLAGWEQ------------------------------------------------------  123 (285)
T ss_dssp             ----------CCCCSCEEEEESCGGG------------------------------------------------------
T ss_pred             ----------hhhhhhhHHHHhhhhc------------------------------------------------------
Confidence                      0234566666555432                                                      


Q ss_pred             chhhhhhcccccCCCCccEEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEec-----------------------
Q 020125          234 SRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATK-----------------------  288 (330)
Q Consensus       234 ~~~w~~~~~~~~~~~~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k-----------------------  288 (330)
                                  .+++||-|++-+.+-+.  ..++.+++-+.++|+ |+|+++|.+-                       
T Consensus       124 ------------~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lk-pgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  190 (285)
T d1kpga_         124 ------------FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTITGLHPKEIHERGLPMSFTFARFL  190 (285)
T ss_dssp             ------------CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHH
T ss_pred             ------------ccccccceeeehhhhhcCchhHHHHHHHHHhhcC-CCCcEEEEEEeccCchhhccccCCcchhhhchh
Confidence                        13579999999999876  567899999999996 8999886321                       


Q ss_pred             ----cccccc--cccHHHHHHhhhhcCceeEEEEee
Q 020125          289 ----KNYVGF--NNAARHLRSLVDEEGIFGAHLIKE  318 (330)
Q Consensus       289 ----~~yfGv--~gg~~~F~~~vee~G~f~~~~~~e  318 (330)
                          ++-|.-  =.+...+..++++.|+ .+.-+..
T Consensus       191 ~fi~kyiFpgg~lPsl~~~~~~~e~agf-~v~~~~~  225 (285)
T d1kpga_         191 KFIVTEIFPGGRLPSIPMVQECASANGF-TVTRVQS  225 (285)
T ss_dssp             HHHHHHTSTTCCCCCHHHHHHHHHTTTC-EEEEEEE
T ss_pred             hHHHHHhccCCCCCChhhHHHHHHHhch-hhccccc
Confidence                111321  1267888889988885 4443333

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.82  E-value=1.6e-08  Score=84.43  Aligned_cols=40  Identities=25%  Similarity=0.248  Sum_probs=36.8

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .-+|.+|||+|||+|-.++.++..|. +|++.|+++.+++.
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~   57 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVER   57 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHH
Confidence            45899999999999999999999998 89999999999854

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.80  E-value=6.7e-09  Score=96.97  Aligned_cols=48  Identities=25%  Similarity=0.198  Sum_probs=42.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .+|++|||+.||+|..|+.|+..||++|++.|.++..++. ...|+.+|
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~-a~~N~~~n  190 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRAL-SLAHFEAN  190 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHH-HHHHHHHT
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHH-HHHHHHHh
Confidence            4799999999999999999999999999999999999866 35666655

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6.2e-09  Score=91.91  Aligned_cols=40  Identities=15%  Similarity=0.149  Sum_probs=35.6

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      -+|++|||+|||+|..+..+++.+..+|+++|+++.+++.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~   91 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQR   91 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHH
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHH
Confidence            3688999999999999999888776789999999999865

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.79  E-value=4e-08  Score=89.85  Aligned_cols=76  Identities=20%  Similarity=0.253  Sum_probs=55.0

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCC
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPES  157 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s  157 (330)
                      ..|++++.+....    -..++|+|+|||+|..++.++.....+|+++|+++++++. +..|+..|.             
T Consensus        96 E~lv~~~~~~~~~----~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~-A~~Na~~~~-------------  157 (271)
T d1nv8a_          96 EELVELALELIRK----YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEI-ARKNAERHG-------------  157 (271)
T ss_dssp             HHHHHHHHHHHHH----HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHH-HHHHHHHTT-------------
T ss_pred             hhhhhhhhhhhcc----ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHH-HHHHHHHcC-------------
Confidence            4566666554321    1346899999999999999888777799999999999966 456666542             


Q ss_pred             CCCCcccCCCCceeeeecccCC
Q 020125          158 SLTPSRQTLAPSVHFYAGDWEE  179 (330)
Q Consensus       158 ~~~~~~~~l~~~v~~~~gdW~~  179 (330)
                              +..++.+..+||.+
T Consensus       158 --------~~~~~~i~~~~~~~  171 (271)
T d1nv8a_         158 --------VSDRFFVRKGEFLE  171 (271)
T ss_dssp             --------CTTSEEEEESSTTG
T ss_pred             --------CCceeEEeeccccc
Confidence                    23456777888866

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.78  E-value=1e-08  Score=88.30  Aligned_cols=111  Identities=17%  Similarity=0.173  Sum_probs=78.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY  173 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~  173 (330)
                      .+.|++||||.||+|..|+-|+..||++|++.|.++++++. +..|+..+.                     ...++++.
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~-~~~N~~~~~---------------------~~~~~~i~   96 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKV-IKENIAITK---------------------EPEKFEVR   96 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHH-HHHHHHHHT---------------------CGGGEEEE
T ss_pred             hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHH-HHHHhhhhh---------------------cccccccc
Confidence            56899999999999999999999999999999999998854 344444331                     11245555


Q ss_pred             ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125          174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI  253 (330)
Q Consensus       174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI  253 (330)
                      .+|....   +.                                                        .......+||+|
T Consensus        97 ~~D~~~~---l~--------------------------------------------------------~~~~~~~~fDlI  117 (182)
T d2fhpa1          97 KMDANRA---LE--------------------------------------------------------QFYEEKLQFDLV  117 (182)
T ss_dssp             ESCHHHH---HH--------------------------------------------------------HHHHTTCCEEEE
T ss_pred             cccchhh---hh--------------------------------------------------------hhcccCCCcceE
Confidence            5553220   00                                                        000134589987


Q ss_pred             EEeccccCcccHHHHHHHHHH--HcCCCCcEEEEEe
Q 020125          254 LLTEIPYSVTSLKKLYLLIKK--CLRPPYGVVYLAT  287 (330)
Q Consensus       254 LasD~iY~~~~~~~L~~~i~~--~L~~p~Gv~~lA~  287 (330)
                      + .|=.|....+..+++.|..  +|+ ++|++++-+
T Consensus       118 f-lDPPY~~~~~~~~l~~i~~~~~L~-~~giIi~E~  151 (182)
T d2fhpa1         118 L-LDPPYAKQEIVSQLEKMLERQLLT-NEAVIVCET  151 (182)
T ss_dssp             E-ECCCGGGCCHHHHHHHHHHTTCEE-EEEEEEEEE
T ss_pred             E-echhhhhhHHHHHHHHHHHCCCCC-CCEEEEEEc
Confidence            6 7889988888888887754  464 889888753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2e-08  Score=88.19  Aligned_cols=53  Identities=21%  Similarity=0.129  Sum_probs=44.4

Q ss_pred             HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ...|.+++.+..    ..-++.+|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus        30 ~~~l~~~~~~~l----~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~   82 (229)
T d2bzga1          30 HQLLKKHLDTFL----KGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQE   82 (229)
T ss_dssp             CHHHHHHHHHHH----TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred             CHHHHHHHHHhc----CCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHH
Confidence            466777777653    234788999999999999999999998 89999999999854

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.8e-08  Score=88.66  Aligned_cols=41  Identities=10%  Similarity=0.289  Sum_probs=36.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..+|++|||+|||+|..++.++..++.+|+++|+++.+++.
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~   89 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREE   89 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHH
Confidence            46789999999999998888877788899999999999855

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=5.4e-08  Score=89.68  Aligned_cols=55  Identities=18%  Similarity=0.173  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH-HcCCCeEEEEeCChHHHHH
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~-~~ga~~V~~tD~~~~vl~~  134 (330)
                      ++...+.+.+.+..    ..-+|.+|||+|||.|-+.+.++ ..|+ +|++.+++++-++.
T Consensus        44 ~Aq~~k~~~~~~~l----~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~   99 (291)
T d1kpia_          44 EAQYAKRKLALDKL----NLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAH   99 (291)
T ss_dssp             HHHHHHHHHHHHTT----CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHHhc----CCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHH
Confidence            34455566666553    45689999999999999998766 5676 89999999987643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.74  E-value=2.8e-08  Score=86.70  Aligned_cols=40  Identities=18%  Similarity=0.121  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc---CCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~---ga~~V~~tD~~~~vl~~  134 (330)
                      -++.+|||||||+|..++.+++.   ...+|++.|.++.|++.
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~   80 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER   80 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHH
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHH
Confidence            36789999999999999888752   23489999999999965

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=7.4e-08  Score=82.39  Aligned_cols=70  Identities=11%  Similarity=0.118  Sum_probs=52.1

Q ss_pred             CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc----------------ccc--cccHHHHHHhhhhc
Q 020125          247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----------------VGF--NNAARHLRSLVDEE  308 (330)
Q Consensus       247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y----------------fGv--~gg~~~F~~~vee~  308 (330)
                      .+.||+|++..+++.......+++-+.+.|+ |+|.+++.....+                +.-  --+..++.+++++.
T Consensus        89 ~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~  167 (208)
T d1vlma_          89 DESFDFALMVTTICFVDDPERALKEAYRILK-KGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKA  167 (208)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHT
T ss_pred             cccccccccccccccccccccchhhhhhcCC-CCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHc
Confidence            4689999999999999999999999999996 8999888753211                000  01467889999999


Q ss_pred             CceeEEEEe
Q 020125          309 GIFGAHLIK  317 (330)
Q Consensus       309 G~f~~~~~~  317 (330)
                      |+-.+++..
T Consensus       168 Gf~~i~v~~  176 (208)
T d1vlma_         168 GFEEFKVVQ  176 (208)
T ss_dssp             TCEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            974454433

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.72  E-value=2.5e-07  Score=82.44  Aligned_cols=134  Identities=16%  Similarity=0.221  Sum_probs=87.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125           96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA  174 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~  174 (330)
                      ..++|||+|||+|..++.+++.. ..++++.|+ +++++.     ...+....                 .+..+|++..
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------~~~~rv~~~~  136 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDT-----ARSYLKDE-----------------GLSDRVDVVE  136 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHH-----HHHHHHHh-----------------hcccchhhcc
Confidence            45799999999999998887653 348899998 556643     33343321                 1345677777


Q ss_pred             cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125          175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL  254 (330)
Q Consensus       175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL  254 (330)
                      +|.-+                                                                 ....+||+|+
T Consensus       137 ~D~~~-----------------------------------------------------------------~~~~~~D~v~  151 (253)
T d1tw3a2         137 GDFFE-----------------------------------------------------------------PLPRKADAII  151 (253)
T ss_dssp             CCTTS-----------------------------------------------------------------CCSSCEEEEE
T ss_pred             ccchh-----------------------------------------------------------------hcccchhhee
Confidence            66321                                                                 0124799999


Q ss_pred             EeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEeccc-----------c--------c-cccccHHHHHHhhhhcCcee
Q 020125          255 LTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKN-----------Y--------V-GFNNAARHLRSLVDEEGIFG  312 (330)
Q Consensus       255 asD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~~-----------y--------f-Gv~gg~~~F~~~vee~G~f~  312 (330)
                      ++.++++-  +....+++-+.+.|+ |+|+++|.....           .        + |...+..+|.+++++.|+ .
T Consensus       152 ~~~vlh~~~d~~~~~~L~~~~~~Lk-PGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf-~  229 (253)
T d1tw3a2         152 LSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGL-V  229 (253)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTE-E
T ss_pred             eccccccCCchhhHHHHHHHHHhcC-CCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCC-e
Confidence            99999864  334467777888896 899988863210           0        0 111257899999999996 4


Q ss_pred             EEEEeec
Q 020125          313 AHLIKEM  319 (330)
Q Consensus       313 ~~~~~e~  319 (330)
                      ..-+..+
T Consensus       230 ~~~v~~~  236 (253)
T d1tw3a2         230 VEEVRQL  236 (253)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            3333333

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.71  E-value=4.4e-09  Score=98.12  Aligned_cols=47  Identities=34%  Similarity=0.347  Sum_probs=39.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .+|++|||++||+|..++.++. |+++|++.|+++.+++. ...|+.+|
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~-a~~n~~~n  190 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRR-AEENARLN  190 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHH-HHHHHHHc
Confidence            4799999999999999998875 56799999999999966 35566655

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.1e-08  Score=86.11  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=37.5

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      +.+++||||+||+|..|+-|+..||++|++.|.|+.+++.
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~   81 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQ   81 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHH
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhH
Confidence            5789999999999999999999999999999999999854

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.68  E-value=3.4e-07  Score=81.34  Aligned_cols=152  Identities=14%  Similarity=0.112  Sum_probs=96.4

Q ss_pred             CcccchhHH-HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHh
Q 020125           70 FLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQA  147 (330)
Q Consensus        70 g~k~W~ss~-~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~  147 (330)
                      .++.|+--. -||..|...+. ....-+|.+|||||||+|.....++..+ ...|++.|+++.+++.+     ..+..  
T Consensus        48 e~r~w~p~rsklaA~i~~gl~-~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a-----~~~a~--  119 (230)
T d1g8sa_          48 EYRIWNPNKSKLAAAIIKGLK-VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMREL-----LDACA--  119 (230)
T ss_dssp             EEEECCTTTCHHHHHHHTTCC-CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHH-----HHHTT--
T ss_pred             eeeeECCCccHHHHHHHhhHH-hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHH-----HHHHh--
Confidence            367898764 56666655432 2235578999999999999888877653 46899999999998642     22211  


Q ss_pred             hhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccc
Q 020125          148 RERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRR  227 (330)
Q Consensus       148 ~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~  227 (330)
                                        -.+.+.+..+|.....                                              
T Consensus       120 ------------------~~~ni~~i~~d~~~~~----------------------------------------------  135 (230)
T d1g8sa_         120 ------------------ERENIIPILGDANKPQ----------------------------------------------  135 (230)
T ss_dssp             ------------------TCTTEEEEECCTTCGG----------------------------------------------
T ss_pred             ------------------hhcccceEEEeeccCc----------------------------------------------
Confidence                              0122333333332211                                              


Q ss_pred             cccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccccccc-ccHHHH---HH
Q 020125          228 SRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFN-NAARHL---RS  303 (330)
Q Consensus       228 ~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~-gg~~~F---~~  303 (330)
                                      ......+|+++....++.....+.++.-+++.|+ |+|.++++.+..-.... .....|   .+
T Consensus       136 ----------------~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LK-pgG~~~i~~k~~~~d~~~~~~~~~~e~~~  198 (230)
T d1g8sa_         136 ----------------EYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLK-KGGYGMIAIKARSIDVTKDPKEIFKEQKE  198 (230)
T ss_dssp             ----------------GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEE-EEEEEEEEEEGGGTCSSSCHHHHHHHHHH
T ss_pred             ----------------ccccccceeEEeeccccchHHHHHHHHHHHHhcc-cCceEEEEeeccccCCCCCHHHHHHHHHH
Confidence                            0123456776666677788888888888999997 89998888655443222 223333   45


Q ss_pred             hhhhcCc
Q 020125          304 LVDEEGI  310 (330)
Q Consensus       304 ~vee~G~  310 (330)
                      .+++.|+
T Consensus       199 ~L~~aGF  205 (230)
T d1g8sa_         199 ILEAGGF  205 (230)
T ss_dssp             HHHHHTE
T ss_pred             HHHHcCC
Confidence            5667785

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.63  E-value=1.5e-07  Score=84.91  Aligned_cols=42  Identities=17%  Similarity=0.241  Sum_probs=35.1

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      ...+|.+|||+|||+|..++++++. | ..+|++.|.+++.++.
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~  125 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKK  125 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHH
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence            3568999999999999999887763 3 3589999999999855

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=5.5e-08  Score=88.28  Aligned_cols=38  Identities=29%  Similarity=0.510  Sum_probs=35.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .+++|||+|||+|..++.++..|+ +|++.|+++.+|+.
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~   93 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKY   93 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHH
Confidence            468999999999999999999987 89999999999965

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.3e-08  Score=86.56  Aligned_cols=64  Identities=13%  Similarity=0.186  Sum_probs=47.5

Q ss_pred             CCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc-------------cccc-----cccHHHHHHhhhh
Q 020125          246 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-------------YVGF-----NNAARHLRSLVDE  307 (330)
Q Consensus       246 ~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~-------------yfGv-----~gg~~~F~~~vee  307 (330)
                      ...+||+|++..++|.....+.+++-+.++|+ |+|.+++.....             .|..     .-....+.+.+++
T Consensus       120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  198 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN  198 (280)
T ss_dssp             SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHH
T ss_pred             CCCceeEEEEccceecCCCHHHHHHHHHhhCC-CCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHH
Confidence            45799999999999999999999999999997 889877764211             0110     1145667788888


Q ss_pred             cCc
Q 020125          308 EGI  310 (330)
Q Consensus       308 ~G~  310 (330)
                      .|+
T Consensus       199 ~G~  201 (280)
T d1jqea_         199 LGL  201 (280)
T ss_dssp             HTC
T ss_pred             CCC
Confidence            885

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.56  E-value=1.8e-07  Score=87.03  Aligned_cols=47  Identities=28%  Similarity=0.247  Sum_probs=41.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      -++++||||.||||..|+.++..|| +|+..|.++.+++. .+.|+.+|
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~-a~~N~~ln  177 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGW-AKENQVLA  177 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHH-HHHHHHHH
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHH-HHHhhhhh
Confidence            3689999999999999999999998 79999999999966 35666666

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1e-07  Score=85.73  Aligned_cols=42  Identities=7%  Similarity=0.158  Sum_probs=35.2

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      ..++|++|||+|||+|+..++.+..+..+|+++|+++.+++.
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~   92 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQE   92 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHH
Confidence            357899999999999988776655556699999999999854

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.51  E-value=9.8e-07  Score=80.01  Aligned_cols=41  Identities=20%  Similarity=0.271  Sum_probs=35.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      ..+|++|||+|||+|..++.+++. | ..+|+..|+++++++.
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~  143 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKL  143 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence            568999999999999999988764 2 3489999999999855

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.48  E-value=1.5e-06  Score=75.83  Aligned_cols=63  Identities=16%  Similarity=0.072  Sum_probs=45.9

Q ss_pred             CcccchhHH-HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125           70 FLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        70 g~k~W~ss~-~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~  134 (330)
                      +.+.|+--. -||..+....  ....-+|.+|||+|||+|.....++. .+..+|++.|+++.+++.
T Consensus        31 ~~r~w~p~rsklaa~i~~g~--~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~   95 (209)
T d1nt2a_          31 GYREWVPWRSKLAAMILKGH--RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEK   95 (209)
T ss_dssp             TEEECCGGGCHHHHHHHTSC--CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHH
T ss_pred             ceeeeCCcchHHHHHHhccc--cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHH
Confidence            567888443 4455554321  12355789999999999988877765 455699999999999965

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=1.5e-06  Score=78.17  Aligned_cols=41  Identities=22%  Similarity=0.167  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~  134 (330)
                      .-++.+|||+|||+|.....++..+. .+|++.|+++.+++.
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~  123 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA  123 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhh
Confidence            45788999999999998888776643 489999999998854

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.40  E-value=5.2e-07  Score=77.11  Aligned_cols=46  Identities=24%  Similarity=0.275  Sum_probs=40.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE  145 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~  145 (330)
                      +.|.+||||-||||-.|+-|+..||++|++.|.+..+++     .++.|++
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~-----~ik~Ni~   87 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVAN-----QLKKNLQ   87 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHH-----HHHHHHH
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhh-----hHhhHHh
Confidence            578999999999999999999999999999999999874     4555654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.39  E-value=2.9e-06  Score=75.78  Aligned_cols=129  Identities=18%  Similarity=0.194  Sum_probs=83.9

Q ss_pred             CCCC-CEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125           94 SFRG-KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH  171 (330)
Q Consensus        94 ~~~~-k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~  171 (330)
                      .|.+ ++|||+|||+|...+.++++- ..++++.|+ ++++     +....++...                 .+..++.
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~-----~~a~~~~~~~-----------------~~~~ri~  134 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-----ERARRRFADA-----------------GLADRVT  134 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----HHHHHHHHHT-----------------TCTTTEE
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHH-----HHHHHHHhhc-----------------CCcceee
Confidence            3444 689999999999998888753 348999998 6666     3344444321                 1234555


Q ss_pred             eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125          172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD  251 (330)
Q Consensus       172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD  251 (330)
                      +..+|--.                                                                 ....+||
T Consensus       135 ~~~~d~~~-----------------------------------------------------------------~~p~~~D  149 (256)
T d1qzza2         135 VAEGDFFK-----------------------------------------------------------------PLPVTAD  149 (256)
T ss_dssp             EEECCTTS-----------------------------------------------------------------CCSCCEE
T ss_pred             eeeeeccc-----------------------------------------------------------------cccccch
Confidence            55444100                                                                 0124699


Q ss_pred             EEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEeccc------------cc---------cccccHHHHHHhhhhc
Q 020125          252 VILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKN------------YV---------GFNNAARHLRSLVDEE  308 (330)
Q Consensus       252 vILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~~------------yf---------Gv~gg~~~F~~~vee~  308 (330)
                      +|+.+.++++-  +....+++-+.+.|+ |+|+++|.....            ++         |...+..+|.+++++.
T Consensus       150 ~v~~~~vLh~~~d~~~~~lL~~i~~~Lk-pgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~A  228 (256)
T d1qzza2         150 VVLLSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA  228 (256)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTT
T ss_pred             hhhccccccccCcHHHHHHHHHHHhhcC-CcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHC
Confidence            99999999754  344567777888896 889888763211            11         1112578999999999


Q ss_pred             Cce
Q 020125          309 GIF  311 (330)
Q Consensus       309 G~f  311 (330)
                      |+-
T Consensus       229 Gf~  231 (256)
T d1qzza2         229 GLA  231 (256)
T ss_dssp             TEE
T ss_pred             CCc
Confidence            963

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.33  E-value=7.2e-06  Score=72.51  Aligned_cols=64  Identities=19%  Similarity=0.240  Sum_probs=45.5

Q ss_pred             CcccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           70 FLKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        70 g~k~W~ss-~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      .++.|+-- =-||..|...+. ....-+|.+|||||||+|.....++.. | ..+|++.|+++.+++.
T Consensus        47 e~R~w~p~rSKlaa~i~~~l~-~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~  113 (227)
T d1g8aa_          47 EYRIWNPNRSKLGAAIMNGLK-NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRE  113 (227)
T ss_dssp             EEEECCTTTCHHHHHHHTTCC-CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             eEEEECCCccHHHHHHHcccc-ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHH
Confidence            36788753 134445544331 223568999999999999988887753 3 3589999999999865

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.32  E-value=3.6e-06  Score=76.24  Aligned_cols=41  Identities=32%  Similarity=0.356  Sum_probs=34.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      .-+|.+|||+|||+|-.++.++.. | ..+|+..|.+++.++.
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~  136 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEH  136 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHH
Confidence            458999999999999999998864 3 3589999999999854

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.4e-05  Score=69.77  Aligned_cols=47  Identities=11%  Similarity=0.000  Sum_probs=37.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      +..+|||+|||+|..++.++.. ...+|+++|+++++++. ...|+..|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~-A~~N~~~n  108 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNY-AKKNVEQN  108 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHH-HHHHHHHT
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHH-HHHHHHHh
Confidence            3459999999999999887653 23489999999999976 46677666

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.3e-05  Score=74.45  Aligned_cols=49  Identities=22%  Similarity=0.192  Sum_probs=39.0

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      ..+|.+|||+|||+|..++.+++. | ..+|+..|+++++++. .+.|+..-
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~-A~~n~~~~  146 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDL-AKKNYKHW  146 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHH-HHHHHHHH
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHH-HHHHHHHh
Confidence            568999999999999999988763 3 3489999999999866 34555543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=4.4e-06  Score=72.78  Aligned_cols=41  Identities=27%  Similarity=0.291  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~  134 (330)
                      .-+|.+|||+|||+|..+..+++. | ..+|++.|+++++++.
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~  115 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI  115 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHH
Confidence            457899999999999999887753 3 3489999999998855

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.3e-06  Score=73.63  Aligned_cols=48  Identities=25%  Similarity=0.270  Sum_probs=36.5

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cC-CCeEEEEeCChHHHHHhhHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLA  142 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~-~g-a~~V~~tD~~~~vl~~~t~pNv~~  142 (330)
                      .-+|.+|||+|||+|..+..+++ .| ..+|++.|+++++++.. +.|+..
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a-~~~l~~  123 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDS-VNNVRK  123 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHH-HHHHHH
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHH-HHhccc
Confidence            34789999999999987766554 34 45899999999999663 455543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.14  E-value=5.4e-06  Score=72.08  Aligned_cols=38  Identities=13%  Similarity=-0.104  Sum_probs=31.2

Q ss_pred             CCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125           97 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC  134 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~  134 (330)
                      +..|||+|||+|-..+.+|+.. -..+++.|+++.+++.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~   68 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVT   68 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHH
Confidence            4589999999999888877643 3589999999998844

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5.6e-06  Score=76.68  Aligned_cols=41  Identities=7%  Similarity=-0.018  Sum_probs=35.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~  134 (330)
                      .-++.+|||+|||+|-+.+.+++ .+++++++.|+++.+++.
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~  190 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKY  190 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence            44688999999999999988765 577899999999999865

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.07  E-value=2.1e-05  Score=68.23  Aligned_cols=38  Identities=11%  Similarity=-0.073  Sum_probs=31.0

Q ss_pred             CCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125           97 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~  134 (330)
                      ...|||+|||+|-..+.+|+. .-..+++.|+++.++..
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~   70 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSY   70 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHH
Confidence            457999999999888777764 34589999999998854

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.01  E-value=1.3e-05  Score=70.63  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .-+|.+|||+|||+|..+..+++.+ .+|+..|++++.++.
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~  107 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNY  107 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHH
T ss_pred             hcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHH
Confidence            4588899999999999888888775 489999999998855

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.98  E-value=0.0001  Score=64.14  Aligned_cols=135  Identities=17%  Similarity=0.156  Sum_probs=84.9

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .+.++|||+|||+|..++.++..  ...+|+..|.+++.++.     .+.|+..+                 .+..+|.+
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~-----a~~~~~~~-----------------gl~~~i~l  112 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAI-----TQQMLNFA-----------------GLQDKVTI  112 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHH-----HHHHHHHH-----------------TCGGGEEE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHH-----HHHHHHHc-----------------CCCcccee
Confidence            36789999999999999998863  23589999999998743     44454432                 13356888


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..||..+.   ++.+                                                      ........||+
T Consensus       113 ~~Gd~~e~---l~~l------------------------------------------------------~~~~~~~~~D~  135 (214)
T d2cl5a1         113 LNGASQDL---IPQL------------------------------------------------------KKKYDVDTLDM  135 (214)
T ss_dssp             EESCHHHH---GGGH------------------------------------------------------HHHSCCCCEEE
T ss_pred             eecccccc---ccch------------------------------------------------------hhcccccccce
Confidence            88875442   1100                                                      00113467998


Q ss_pred             EEEeccccCcccHHHHHHHHHH--HcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEEEe
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKK--CLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK  317 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~--~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~~~  317 (330)
                      |+--   .+.+.+.....+...  +|+ |+|++ |+---.+.    |...|++++++..-|......
T Consensus       136 ifiD---~~~~~~~~~~~l~~~~~lLk-pGGvI-v~Ddvl~~----g~~~~~~~vr~~~~~~~~~~~  193 (214)
T d2cl5a1         136 VFLD---HWKDRYLPDTLLLEKCGLLR-KGTVL-LADNVIVP----GTPDFLAYVRGSSSFECTHYS  193 (214)
T ss_dssp             EEEC---SCGGGHHHHHHHHHHTTCEE-EEEEE-EESCCCCC----CCHHHHHHHHHCTTEEEEEEE
T ss_pred             eeec---ccccccccHHHHHHHhCccC-CCcEE-EEeCcCCC----CChHHHHHHhccCceeehhhh
Confidence            8753   345555555454442  465 77764 45443332    457788999887766665443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.00022  Score=62.29  Aligned_cols=149  Identities=17%  Similarity=0.178  Sum_probs=92.5

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE  156 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~  156 (330)
                      .-+++|....    ...+-|+|||+|||+|..++.++..  .-.+|+..|.+++..+.     .+.|+..+         
T Consensus        46 ~~g~lL~~L~----~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~-----A~~~~~~a---------  107 (219)
T d2avda1          46 EQAQLLANLA----RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPEL-----GRPLWRQA---------  107 (219)
T ss_dssp             HHHHHHHHHH----HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHH-----HHHHHHHT---------
T ss_pred             HHHHHHHHHH----HccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHH-----HHHHHHhc---------
Confidence            3455554433    2357899999999999999998863  12489999999998743     34454422         


Q ss_pred             CCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 020125          157 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA  236 (330)
Q Consensus       157 s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~  236 (330)
                              .+..++++..||-.+.-  ...                                            +     
T Consensus       108 --------g~~~~i~~~~Gda~e~l--~~~--------------------------------------------~-----  128 (219)
T d2avda1         108 --------EAEHKIDLRLKPALETL--DEL--------------------------------------------L-----  128 (219)
T ss_dssp             --------TCTTTEEEEESCHHHHH--HHH--------------------------------------------H-----
T ss_pred             --------CccceEEEEEeehhhcc--hhh--------------------------------------------h-----
Confidence                    13346777777643310  000                                            0     


Q ss_pred             hhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc----------cccHHHHHHhhh
Q 020125          237 WERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVD  306 (330)
Q Consensus       237 w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv----------~gg~~~F~~~ve  306 (330)
                            .....+.||+|.. |.  +.+.+...++.+.++|+ |+|++.+- -...-|.          .-++++|.+.++
T Consensus       129 ------~~~~~~~fD~ifi-D~--dk~~y~~~~~~~~~lL~-~GGvii~D-n~l~~G~v~~~~~~d~~~~~ir~~~~~i~  197 (219)
T d2avda1         129 ------AAGEAGTFDVAVV-DA--DKENCSAYYERCLQLLR-PGGILAVL-RVLWRGKVLQPPKGDVAAECVRNLNERIR  197 (219)
T ss_dssp             ------HTTCTTCEEEEEE-CS--CSTTHHHHHHHHHHHEE-EEEEEEEE-CCSGGGGGGSCCTTCHHHHHHHHHHHHHH
T ss_pred             ------hhcccCCccEEEE-eC--CHHHHHHHHHHHHHHhc-CCcEEEEe-CCcccCcccCcccCCHHHHHHHHHHHHHH
Confidence                  0113468999987 32  44667777777788886 88887653 2221110          014788999998


Q ss_pred             hcCceeEEE
Q 020125          307 EEGIFGAHL  315 (330)
Q Consensus       307 e~G~f~~~~  315 (330)
                      ++--|.+.+
T Consensus       198 ~d~r~~~~l  206 (219)
T d2avda1         198 RDVRVYISL  206 (219)
T ss_dssp             HCTTEEEEE
T ss_pred             hCCCEEEEE
Confidence            876566554

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.77  E-value=4.3e-05  Score=66.85  Aligned_cols=41  Identities=17%  Similarity=0.114  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125           93 LSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        93 ~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~  134 (330)
                      ..-+|.+|||+|||+|..+..++. .| .+|+..|.++++++.
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~  116 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEF  116 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHH
T ss_pred             ccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHH
Confidence            356789999999999998877775 46 479999999998754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=0.00018  Score=68.52  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=35.9

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHh
Q 020125           94 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~  135 (330)
                      .-+|.+|||||||+|-+.+.+|+ .|.++|++.|+++.+++..
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~A  256 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT  256 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            56789999999999988887664 6777999999999998663

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.69  E-value=7.3e-05  Score=65.57  Aligned_cols=49  Identities=20%  Similarity=0.220  Sum_probs=36.7

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHc----CC---CeEEEEeCChHHHHHhhHHHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLK----GA---GTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~----ga---~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .-+|.+|||+|||+|..+..++..    |.   .+|+..|+++++++.. ..|+..+
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a-~~~l~~~  133 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS-KANLNTD  133 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHH-HHHHHHH
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHH-HHhhhhc
Confidence            457899999999999877666542    21   3799999999998763 4565544

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=0.00011  Score=63.83  Aligned_cols=39  Identities=26%  Similarity=0.522  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIR  133 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~  133 (330)
                      +.+++|+|+|+|.|+|||..+... ..+|++.|.+..=+.
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~  103 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVR  103 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHH
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHH
Confidence            467899999999999999988654 369999999987553

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.52  E-value=0.0013  Score=57.97  Aligned_cols=68  Identities=15%  Similarity=0.138  Sum_probs=47.0

Q ss_pred             CccEEEEeccccCcc--cHHHHHHHHHHHcCCCCcEEEEEeccc--------------cc---------cccccHHHHHH
Q 020125          249 GYDVILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKN--------------YV---------GFNNAARHLRS  303 (330)
Q Consensus       249 ~fDvILasD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~k~~--------------yf---------Gv~gg~~~F~~  303 (330)
                      +.|+|+.+-++++-+  ....+++-+.+.|+ |+|+++|+---.              ++         |...+..+|.+
T Consensus       139 ~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~-pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~  217 (244)
T d1fp1d2         139 QGDAMILKAVCHNWSDEKCIEFLSNCHKALS-PNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEK  217 (244)
T ss_dssp             CEEEEEEESSGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHH
T ss_pred             cceEEEEehhhhhCCHHHHHHHHHHHHHHcC-CCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHH
Confidence            459999999997653  35567777777885 889998874210              11         11124789999


Q ss_pred             hhhhcCceeEEEEe
Q 020125          304 LVDEEGIFGAHLIK  317 (330)
Q Consensus       304 ~vee~G~f~~~~~~  317 (330)
                      ++++.|+=.++++.
T Consensus       218 ll~~AGF~~v~v~~  231 (244)
T d1fp1d2         218 LSKLSGFSKFQVAC  231 (244)
T ss_dssp             HHHHTTCSEEEEEE
T ss_pred             HHHHcCCCceEEEe
Confidence            99999976666654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.38  E-value=0.0021  Score=53.90  Aligned_cols=50  Identities=20%  Similarity=0.134  Sum_probs=35.9

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH--HcCCCeEEEEeCChHHH
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC--LKGAGTVHFQDLSAETI  132 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~--~~ga~~V~~tD~~~~vl  132 (330)
                      .++++|.+..    ..-++.+|||.|||+|-..+.+.  ......+++.|+++..+
T Consensus         6 ~i~~~m~~l~----~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~   57 (223)
T d2ih2a1           6 EVVDFMVSLA----EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL   57 (223)
T ss_dssp             HHHHHHHHHC----CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC
T ss_pred             HHHHHHHHhc----CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH
Confidence            4677777653    23478899999999996544443  23456899999998754

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.33  E-value=0.00079  Score=61.69  Aligned_cols=40  Identities=20%  Similarity=0.159  Sum_probs=33.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      ..|+||.+|.|.|...-.+.+. ...+|++.|++++|++.+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a  117 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVA  117 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHH
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHH
Confidence            4689999999999777766654 467999999999999764

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.30  E-value=0.0006  Score=61.32  Aligned_cols=40  Identities=20%  Similarity=0.200  Sum_probs=34.7

Q ss_pred             CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~  135 (330)
                      +.++||-+|.|.|...-.+.+.+..+|++.|++++|++.+
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a  111 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVS  111 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHH
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHH
Confidence            5689999999999888777777778999999999998653

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.28  E-value=0.00072  Score=59.27  Aligned_cols=138  Identities=14%  Similarity=0.232  Sum_probs=86.0

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF  172 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~  172 (330)
                      .+-++|||+|+++|..++.++..  ...+|+.+|.+++..+.     .+.|+..+                 .+..++++
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~-----A~~~~~~~-----------------g~~~~i~~  115 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL-----GLPVIKKA-----------------GVDHKIDF  115 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHH-----HHHHHHHT-----------------TCGGGEEE
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHH-----HHHHHHHh-----------------ccccceee
Confidence            36789999999999999998752  23599999999987644     22333321                 12346777


Q ss_pred             eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125          173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV  252 (330)
Q Consensus       173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv  252 (330)
                      ..|+..+.   ++.+                                                 .    ......++||+
T Consensus       116 ~~g~a~~~---L~~l-------------------------------------------------~----~~~~~~~~fD~  139 (227)
T d1susa1         116 REGPALPV---LDEM-------------------------------------------------I----KDEKNHGSYDF  139 (227)
T ss_dssp             EESCHHHH---HHHH-------------------------------------------------H----HCGGGTTCBSE
T ss_pred             eehHHHHH---HHHH-------------------------------------------------H----hccccCCceeE
Confidence            77764331   1100                                                 0    00113468999


Q ss_pred             EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccccc----------------ccccHHHHHHhhhhcCceeEEE
Q 020125          253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG----------------FNNAARHLRSLVDEEGIFGAHL  315 (330)
Q Consensus       253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfG----------------v~gg~~~F~~~vee~G~f~~~~  315 (330)
                      |.. |.  +...+..-++.+..+|+ |+|++.+= .-...|                .....++|.+.+.++.-|.+.+
T Consensus       140 iFi-Da--~k~~y~~~~e~~~~ll~-~gGiii~D-Nvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~l  213 (227)
T d1susa1         140 IFV-DA--DKDNYLNYHKRLIDLVK-VGGVIGYD-NTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICM  213 (227)
T ss_dssp             EEE-CS--CSTTHHHHHHHHHHHBC-TTCCEEEE-TTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEE
T ss_pred             EEe-cc--chhhhHHHHHHHHhhcC-CCcEEEEc-cCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            987 53  45668888888888886 88877653 111111                1124677888888776555544

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.16  E-value=0.0045  Score=54.28  Aligned_cols=66  Identities=18%  Similarity=0.173  Sum_probs=42.9

Q ss_pred             CccEEEEeccccCc--ccHHHHHHHHHHHcCCCC---cEEEEEec-----c---------ccc--------cccccHHHH
Q 020125          249 GYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPY---GVVYLATK-----K---------NYV--------GFNNAARHL  301 (330)
Q Consensus       249 ~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~---Gv~~lA~k-----~---------~yf--------Gv~gg~~~F  301 (330)
                      ++|+++..-++++-  +....+++-+.+.|+ |+   |+++|.--     .         ..+        |...+..+|
T Consensus       138 ~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~-pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~  216 (244)
T d1fp2a2         138 NADAVLLKYILHNWTDKDCLRILKKCKEAVT-NDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEW  216 (244)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHHS-GGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHH
T ss_pred             CCcEEEEEeecccCChHHHHHHHHHHHHHcC-cccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence            57999999998644  444567777777786 54   67776521     0         011        222368899


Q ss_pred             HHhhhhcCceeEEE
Q 020125          302 RSLVDEEGIFGAHL  315 (330)
Q Consensus       302 ~~~vee~G~f~~~~  315 (330)
                      .+++++.|+=.+++
T Consensus       217 ~~ll~~AGf~~~~i  230 (244)
T d1fp2a2         217 KKLFIEAGFQHYKI  230 (244)
T ss_dssp             HHHHHHTTCCEEEE
T ss_pred             HHHHHHcCCceEEE
Confidence            99999999644444

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0035  Score=56.56  Aligned_cols=40  Identities=15%  Similarity=0.131  Sum_probs=33.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      ..++||-+|-|.|...-.+.+. +..+|++.|++++|++.+
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a  118 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVS  118 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHH
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHH
Confidence            4589999999999877777764 578999999999999764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.99  E-value=0.007  Score=54.48  Aligned_cols=39  Identities=15%  Similarity=0.037  Sum_probs=30.3

Q ss_pred             CCCEEEEEcccCCHHHHHHHH----c--CCCeEEEEeCChHHHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACL----K--GAGTVHFQDLSAETIRC  134 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~----~--ga~~V~~tD~~~~vl~~  134 (330)
                      ++.+|||.+||+|...+.+..    .  ...++++.|+++.+++.
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~  161 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISL  161 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHH
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHH
Confidence            567899999999987777653    1  12379999999998865

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.97  E-value=0.0034  Score=56.95  Aligned_cols=40  Identities=15%  Similarity=0.073  Sum_probs=32.9

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      ..++||-+|.|.|...-.+.+. +..+|++.|++++|++.+
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a  129 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAA  129 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHH
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHH
Confidence            4689999999999776666654 467999999999999764

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.91  E-value=0.00041  Score=58.92  Aligned_cols=43  Identities=16%  Similarity=0.326  Sum_probs=34.5

Q ss_pred             CCCCccEEEEecccc--CcccHHHHHHHHHHHcCCCCcEEEEEecc
Q 020125          246 GEGGYDVILLTEIPY--SVTSLKKLYLLIKKCLRPPYGVVYLATKK  289 (330)
Q Consensus       246 ~~~~fDvILasD~iY--~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~  289 (330)
                      ..++||+|++-.++-  +++....+++.+..+|+ |+|..+|...-
T Consensus       129 ~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~-pGG~L~lG~sE  173 (193)
T d1af7a2         129 VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFAGHSE  173 (193)
T ss_dssp             CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEECTTC
T ss_pred             CCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhC-CCcEEEEecCc
Confidence            357899999999865  45667789999999996 99998887544

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.0012  Score=60.36  Aligned_cols=63  Identities=19%  Similarity=0.093  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125           75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN  143 (330)
Q Consensus        75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N  143 (330)
                      .....|.+.+.+..    ..-++.+||||-||+|..|+.++.. +++|++.|.++++++.. ..|...|
T Consensus       195 ~~~e~l~~~v~~~~----~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A-~~na~~n  257 (358)
T d1uwva2         195 GVNQKMVARALEWL----DVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKG-QQNARLN  257 (358)
T ss_dssp             HHHHHHHHHHHHHH----TCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHH-HHHHHHT
T ss_pred             hhhhHHHHHHHHhh----ccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHH-HHhHHhc
Confidence            34455555555443    2446789999999999999999876 45999999999998552 3444444

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.79  E-value=0.00077  Score=63.34  Aligned_cols=49  Identities=29%  Similarity=0.334  Sum_probs=41.7

Q ss_pred             CCCCEEEEEcccCCHHHHH-HHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIF-ACLKGAGTVHFQDLSAETIRCTTVPNVLANL  144 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~-a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~  144 (330)
                      +++++|||..||||+-||- +...|+.+|++.|+|++.++. ...|+++|.
T Consensus        44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~-i~~N~~lN~   93 (375)
T d2dula1          44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYEL-MKRNVMLNF   93 (375)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHH-HHHHHHHHC
T ss_pred             hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHH-HHHHHHhcC
Confidence            4789999999999999995 555789999999999999976 467777774

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.77  E-value=0.002  Score=56.97  Aligned_cols=37  Identities=16%  Similarity=0.204  Sum_probs=31.5

Q ss_pred             CCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHH
Q 020125           96 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETI  132 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl  132 (330)
                      .+++++|+|+|.|+|||.++. ....+|++.|-+..=.
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~  107 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI  107 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH
Confidence            467999999999999999875 4567999999988744

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.77  E-value=0.007  Score=54.56  Aligned_cols=40  Identities=13%  Similarity=0.112  Sum_probs=33.4

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      .-++||-+|-|.|...-.+.+. +.++|++.|++++|++.+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~  120 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVS  120 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHH
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHH
Confidence            4579999999999877777664 567999999999999764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.75  E-value=0.009  Score=53.37  Aligned_cols=40  Identities=15%  Similarity=0.091  Sum_probs=34.2

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      ..++||-+|-|.|...-.+.+. +.++|++.|++++|++.+
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a  115 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYS  115 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHH
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHH
Confidence            4589999999999888777764 678999999999999763

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.59  E-value=0.012  Score=51.19  Aligned_cols=33  Identities=18%  Similarity=-0.063  Sum_probs=27.2

Q ss_pred             CCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCCh
Q 020125           97 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSA  129 (330)
Q Consensus        97 ~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~  129 (330)
                      .++|||+|||+|..++.++++- ..++++.|..+
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~  115 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH  115 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH
Confidence            4689999999999999887642 34899999965

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=96.43  E-value=0.0026  Score=55.80  Aligned_cols=39  Identities=10%  Similarity=0.095  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  133 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~  133 (330)
                      .-++.+|||+|||+|.+...++..++ +|++.|+++.+++
T Consensus        19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~   57 (235)
T d1qama_          19 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCK   57 (235)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHH
T ss_pred             CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHH
Confidence            45789999999999999999988765 8999999998764

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.87  E-value=0.016  Score=52.89  Aligned_cols=40  Identities=20%  Similarity=0.103  Sum_probs=33.1

Q ss_pred             CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125           96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT  135 (330)
Q Consensus        96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~  135 (330)
                      ..++||-+|-|.|...-.+.+. ...+|++.|++++|++.+
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a  146 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVA  146 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHH
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHH
Confidence            4679999999999877777664 457999999999998653

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0071  Score=53.47  Aligned_cols=40  Identities=10%  Similarity=0.076  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~  134 (330)
                      .-++..|||+|||+|.+.-.++..+ ++|++.|+|+.+++.
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~   58 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAAR   58 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHH
Confidence            4568899999999999999888775 589999999988743

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.018  Score=51.48  Aligned_cols=39  Identities=21%  Similarity=0.084  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  133 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~  133 (330)
                      .-++..|||+|+|+|.+.-.++..++ +|++.++|+..+.
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~   57 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVA   57 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhH
Confidence            34688999999999999999988875 9999999999773

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.01  E-value=0.031  Score=47.11  Aligned_cols=41  Identities=17%  Similarity=0.063  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~  134 (330)
                      .-+|..+||.+||+|-.+...+. ....+|++.|.++++++.
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~   62 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRI   62 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHH
Confidence            35788999999999987766554 334589999999999843

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=94.95  E-value=0.0027  Score=56.10  Aligned_cols=39  Identities=15%  Similarity=0.071  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHH
Q 020125           94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR  133 (330)
Q Consensus        94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~  133 (330)
                      .-.+.+|||+|||+|.+...++..++ +|++.|+++.+++
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~   65 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFN   65 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSS
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchh
Confidence            34678999999999999988888754 8999999998753

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=93.28  E-value=0.24  Score=45.86  Aligned_cols=53  Identities=19%  Similarity=0.152  Sum_probs=37.5

Q ss_pred             HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc----C----------CCeEEEEeCChHHHHHh
Q 020125           79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK----G----------AGTVHFQDLSAETIRCT  135 (330)
Q Consensus        79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~----g----------a~~V~~tD~~~~vl~~~  135 (330)
                      .++++|.+..    ..-.+.+|+|-.||+|-.-+.+...    +          ...++++|+++.+...+
T Consensus       149 ~Iv~~mv~ll----~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la  215 (425)
T d2okca1         149 PLIQAMVDCI----NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA  215 (425)
T ss_dssp             HHHHHHHHHH----CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred             hhhHhhheec----cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHH
Confidence            4566666554    2235789999999999877776542    1          12599999999988653

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.65  E-value=0.24  Score=44.55  Aligned_cols=39  Identities=15%  Similarity=0.147  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHH
Q 020125           95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR  133 (330)
Q Consensus        95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~  133 (330)
                      .++..|||+|.|.|.++-.+... ++++|++.+.++..++
T Consensus        42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~   81 (322)
T d1i4wa_          42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK   81 (322)
T ss_dssp             TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH
T ss_pred             cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHH
Confidence            46779999999999998887754 5789999999998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.33  E-value=0.43  Score=39.44  Aligned_cols=41  Identities=27%  Similarity=0.297  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl~~  134 (330)
                      .-+|.+||-+|||. |+..+.++ ..|+.+|+++|.+++-++.
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~   65 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAH   65 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHh
Confidence            45789999999985 66655555 4688899999999986643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=85.24  E-value=0.43  Score=38.70  Aligned_cols=39  Identities=26%  Similarity=0.444  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcccC-CHHHHHHHH-cCCCeEEEEeCChHHH
Q 020125           94 SFRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETI  132 (330)
Q Consensus        94 ~~~~k~VLELGcGt-GL~gi~a~~-~ga~~V~~tD~~~~vl  132 (330)
                      .-+|.+||=+|||. |+.++.+++ .|+++|+++|.+++=+
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~   66 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF   66 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH
Confidence            45788999999986 887777664 6899999999999744

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=84.89  E-value=0.92  Score=36.31  Aligned_cols=40  Identities=33%  Similarity=0.399  Sum_probs=29.9

Q ss_pred             CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHHH
Q 020125           94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR  133 (330)
Q Consensus        94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl~  133 (330)
                      .-+|.+||-+|||. |+..+.++ ..|+++|+++|.+++-++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~   67 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLK   67 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHH
T ss_pred             CCCCCEEEEECCCccchhheeccccccccccccccccccccc
Confidence            34789999999873 55444444 368889999999998654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=83.39  E-value=0.59  Score=40.07  Aligned_cols=58  Identities=12%  Similarity=-0.103  Sum_probs=41.6

Q ss_pred             CCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH----c-CCCeEEEEeCChH
Q 020125           68 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL----K-GAGTVHFQDLSAE  130 (330)
Q Consensus        68 ~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~----~-ga~~V~~tD~~~~  130 (330)
                      |-|..+|....+++-|-. .+    ..++.++|||+|++.|-..++.+.    . ...+|++.|+++.
T Consensus        57 w~G~p~~k~p~d~~~~~e-li----~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~  119 (232)
T d2bm8a1          57 WRGLRMLKDPDTQAVYHD-ML----WELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS  119 (232)
T ss_dssp             ETTEECCSCHHHHHHHHH-HH----HHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT
T ss_pred             ccceecccCHHHHHHHHH-HH----HHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChh
Confidence            347889988888876632 22    345789999999999976655432    1 2458999999875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.76  E-value=0.63  Score=37.59  Aligned_cols=41  Identities=24%  Similarity=0.336  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHHHH
Q 020125           94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIRC  134 (330)
Q Consensus        94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl~~  134 (330)
                      .-+|..|+=.|||. |+..+..+ ..|+++|+++|.+++-++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~   69 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEK   69 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHH
Confidence            45788999999984 66666655 4688899999999986643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.60  E-value=0.76  Score=36.45  Aligned_cols=39  Identities=31%  Similarity=0.420  Sum_probs=29.4

Q ss_pred             CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHH
Q 020125           94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETI  132 (330)
Q Consensus        94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl  132 (330)
                      .-+|.+||=+|||. |+..+.++ ..|+.+|+++|.+++-+
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl   64 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL   64 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHH
Confidence            34688999999974 55554444 46888999999999755

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=82.54  E-value=0.61  Score=37.65  Aligned_cols=40  Identities=25%  Similarity=0.293  Sum_probs=30.7

Q ss_pred             CCCCCEEEEEcccC-CHHHHHHHH-cCCCeEEEEeCChHHHH
Q 020125           94 SFRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIR  133 (330)
Q Consensus        94 ~~~~k~VLELGcGt-GL~gi~a~~-~ga~~V~~tD~~~~vl~  133 (330)
                      .-+|.+||=+|||. |+..+.+++ .|+++|+++|.+++=++
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~   66 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVE   66 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHH
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHH
Confidence            34688888899985 776666665 68889999999987553

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=82.27  E-value=0.64  Score=37.46  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHHH
Q 020125           94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR  133 (330)
Q Consensus        94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl~  133 (330)
                      .-+|.+||=+|||. |+..+..+ ..|+++|+++|.+++=++
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~   66 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFP   66 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHH
Confidence            56889999999984 55555544 478999999999998654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=82.22  E-value=1.5  Score=41.52  Aligned_cols=54  Identities=17%  Similarity=-0.036  Sum_probs=38.0

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc----C---------------CCeEEEEeCChHHHHHh
Q 020125           78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK----G---------------AGTVHFQDLSAETIRCT  135 (330)
Q Consensus        78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~----g---------------a~~V~~tD~~~~vl~~~  135 (330)
                      ..++++|.+..    ....+.+|+|-.||+|-.-+.+...    .               ...++++|+++.+.+.+
T Consensus       150 ~~Iv~~mv~ll----~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la  222 (524)
T d2ar0a1         150 RPLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  222 (524)
T ss_dssp             HHHHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             cchhHhhhhcc----cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence            45667776654    2346779999999999777666431    0               12589999999988653

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=80.34  E-value=2.2  Score=34.72  Aligned_cols=50  Identities=20%  Similarity=0.233  Sum_probs=35.1

Q ss_pred             hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCCh
Q 020125           76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSA  129 (330)
Q Consensus        76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~  129 (330)
                      |+.-|.+...+.    ...-++.+||||||+.|-..-++..  .....|++.|..+
T Consensus         6 aafKL~EI~~k~----~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_           6 AWFKLDEIQQSD----KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             HHHHHHHHHHHH----CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             HHHHHHHHHHHh----CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            455566654433    2345788999999999999888764  2335799999765