Citrus Sinensis ID: 020148

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTYLSFSENLVLLC
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccccccccccccccccccccccccHHHHHHHHHHHcccHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccEEEEc
cccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccEEEEEc
msgilfhkyggedldsyypirpecqadvpkvRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIqrggihpsikGLVWEFLlgcydpnstfeERNQIRQQRRQQYAAWKTECqnivpiigsgkFITAAivtddgqslqdsnrdsldqgwhvdgaiSDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWvdndigyvqgmndICSPMIVLLENEADAFWCFEHTMRRLRENFrtntgmigvQSQLSTLSQIIRTIDPKLHqhledldggEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTYLSFSENLVLLC
msgilfhkyggedldsyYPIRPECQADVPKVRFKARAGKTLSARRWHaafsedghldIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYesetnqaklwDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTYLSFsenlvllc
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEErnqirqqrrqqYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTYLSFSENLVLLC
***ILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFE****I**QRRQQYAAWKTECQNIVPIIGSGKFITAAIVTD*************DQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTYLSFSENLVLL*
*********************************************WHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTYLSFSENLVLLC
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEER************AWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTYLSFSENLVLLC
*SG***H*YGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQS********************DKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTYLSFSENLVLLC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTYLSFSENLVLLC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query330 2.2.26 [Sep-21-2011]
Q9CXF4 671 TBC1 domain family member yes no 0.754 0.371 0.332 1e-35
Q8TC07 691 TBC1 domain family member yes no 0.754 0.360 0.335 4e-35
Q9UUH7743 GTPase-activating protein yes no 0.784 0.348 0.313 9e-28
Q6FWI1 745 GTPase-activating protein yes no 0.715 0.316 0.273 9e-27
P09379 730 GTPase-activating protein yes no 0.739 0.334 0.295 3e-26
Q8BYH7 645 TBC1 domain family member no no 0.730 0.373 0.296 3e-24
A1A5B6 742 TBC1 domain family member no no 0.690 0.307 0.269 3e-24
Q3MII6 688 TBC1 domain family member no no 0.690 0.331 0.269 7e-24
Q9HA65 648 TBC1 domain family member no no 0.730 0.371 0.307 1e-23
Q6BU76757 GTPase-activating protein yes no 0.815 0.355 0.281 2e-23
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function desciption
 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 46/295 (15%)

Query: 39  KTLSARRWHAAFSEDGHL-DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQ 97
           + +S   W+ +   +G L  +  + ++I RGG+  S++   W+FLLG +  +ST EER Q
Sbjct: 298 EPVSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDSTKEERTQ 357

Query: 98  IRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAIS 157
           +++Q+  +Y   K + +++                 + Q  ++S              + 
Sbjct: 358 LQKQKTDEYFRMKLQWKSV----------------SEAQEKRNSR-------------LR 388

Query: 158 DKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAK--LWDVLAIYSWVDNDIGYVQGMN 215
           D + L        I  DV RTDR+  FYE + N     L D+L  Y   D D+GYVQGM+
Sbjct: 389 DYRSL--------IEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMS 440

Query: 216 DICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 275
           D+ SP++ ++ENE DAFWCF   M ++ +NF     M G+++QL  LS ++R +D     
Sbjct: 441 DLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQ--MQGMKTQLIQLSTLLRLLDSGFCS 498

Query: 276 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTYLSFSENLVLLC 330
           +LE  D G   F FR L++ F+REFSF+D L LWEV     +T L      +LLC
Sbjct: 499 YLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEV----MWTELPCKNFHLLLC 549
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Mus musculus (taxid: 10090)
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function description
>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query330
255577934421 conserved hypothetical protein [Ricinus 0.936 0.733 0.774 1e-150
297744173 486 unnamed protein product [Vitis vinifera] 0.936 0.635 0.766 1e-145
359480030 451 PREDICTED: TBC1 domain family member 25- 0.942 0.689 0.732 1e-144
224082860418 predicted protein [Populus trichocarpa] 0.9 0.710 0.735 1e-138
297803220424 RabGAP/TBC domain-containing protein [Ar 0.915 0.712 0.736 1e-137
42567218424 RabGAP/TBC domain-containing protein [Ar 0.915 0.712 0.736 1e-137
42569183425 RabGAP/TBC domain-containing protein [Ar 0.915 0.710 0.717 1e-135
356536848424 PREDICTED: TBC1 domain family member 15- 0.909 0.707 0.699 1e-131
356548075413 PREDICTED: TBC1 domain family member 15- 0.887 0.709 0.708 1e-130
297836794425 RabGAP/TBC domain-containing protein [Ar 0.915 0.710 0.717 1e-130
>gi|255577934|ref|XP_002529839.1| conserved hypothetical protein [Ricinus communis] gi|223530667|gb|EEF32540.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 240/310 (77%), Positives = 279/310 (90%), Gaps = 1/310 (0%)

Query: 10  GGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGG 69
           GG+D+ ++YPIRPECQAD PK RFK RAGKTLS+RRWHAAFS DGHLDIAKVLRRIQRGG
Sbjct: 13  GGDDIGTFYPIRPECQADAPKPRFKPRAGKTLSSRRWHAAFSGDGHLDIAKVLRRIQRGG 72

Query: 70  IHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAA 129
           +HP+IKGLVWEFLLGCYDPNSTFEERNQ+RQ RR+QY  WK +CQN+VP+IGSGKFIT  
Sbjct: 73  VHPTIKGLVWEFLLGCYDPNSTFEERNQLRQNRREQYCRWKADCQNMVPVIGSGKFITTP 132

Query: 130 IVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESET 189
           I+TDDGQ + DS+R++ D G HV  A+SDKKV+QWML LHQIGLDVVRTDR+LVFYESE+
Sbjct: 133 IITDDGQPIMDSSRNN-DHGGHVSNAVSDKKVIQWMLALHQIGLDVVRTDRTLVFYESES 191

Query: 190 NQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTN 249
           NQAKLWDVLAIY+W+DNDIGYVQGMNDICSPM++LLENEADAFWCF+  M++LRENFR +
Sbjct: 192 NQAKLWDVLAIYAWIDNDIGYVQGMNDICSPMVILLENEADAFWCFDRAMQKLRENFRCS 251

Query: 250 TGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLW 309
              +GVQ+QL TLSQ+I+T+DPKLHQHLE+LDGGEYLFAFRMLMVLFRREF+F DALYLW
Sbjct: 252 ASSMGVQTQLGTLSQVIKTVDPKLHQHLEELDGGEYLFAFRMLMVLFRREFTFADALYLW 311

Query: 310 EVRRNLFFTY 319
           E   ++F +Y
Sbjct: 312 EYNPSIFSSY 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297744173|emb|CBI37143.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480030|ref|XP_002272358.2| PREDICTED: TBC1 domain family member 25-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224082860|ref|XP_002306868.1| predicted protein [Populus trichocarpa] gi|222856317|gb|EEE93864.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297803220|ref|XP_002869494.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315330|gb|EFH45753.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42567218|ref|NP_194584.3| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|119935837|gb|ABM06008.1| At4g28550 [Arabidopsis thaliana] gi|332660104|gb|AEE85504.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42569183|ref|NP_179634.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|238479300|ref|NP_001154525.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251913|gb|AEC07007.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251914|gb|AEC07008.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356536848|ref|XP_003536945.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356548075|ref|XP_003542429.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|297836794|ref|XP_002886279.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332119|gb|EFH62538.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query330
TAIR|locus:2121353424 AT4G28550 [Arabidopsis thalian 0.915 0.712 0.717 3.6e-121
TAIR|locus:2038922425 AT2G20440 [Arabidopsis thalian 0.915 0.710 0.697 4.6e-121
TAIR|locus:2136442 436 AT4G27100 [Arabidopsis thalian 0.909 0.688 0.589 7.9e-101
TAIR|locus:2160145432 AT5G54780 [Arabidopsis thalian 0.906 0.692 0.601 2.4e-99
TAIR|locus:2097573 720 AT3G59570 [Arabidopsis thalian 0.603 0.276 0.441 6.1e-51
TAIR|locus:2058228 745 AT2G43490 [Arabidopsis thalian 0.472 0.209 0.496 8.5e-51
TAIR|locus:2165710549 AT5G41940 [Arabidopsis thalian 0.357 0.214 0.45 5.7e-37
UNIPROTKB|A8K8E1 445 TBC1D15 "TBC1 domain family, m 0.457 0.339 0.440 2.7e-36
MGI|MGI:1913937 671 Tbc1d15 "TBC1 domain family, m 0.457 0.225 0.440 2.3e-35
UNIPROTKB|F1LPD8 670 Tbc1d15 "Protein Tbc1d15" [Rat 0.457 0.225 0.440 3.7e-35
TAIR|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 218/304 (71%), Positives = 257/304 (84%)

Query:     8 KYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQR 67
             K GGEDL  +YP+R EC ADVP+ RFK+RAGKTLSAR+WHAAF+ DGHLD+ +VLRRIQR
Sbjct:     9 KSGGEDLQGFYPVREECVADVPRTRFKSRAGKTLSARKWHAAFTGDGHLDMERVLRRIQR 68

Query:    68 GGIHPSIKGLVWEFLLGCYDPNSTFEEXXXXXXXXXXXYAAWKTECQNIVPIIGSGKFIT 127
             GGIHPSIKG VWEFLLG YDP+STFEE           Y AWK EC+N+VP++GSGKF+T
Sbjct:    69 GGIHPSIKGEVWEFLLGAYDPDSTFEERNKLRNHRREQYYAWKEECKNMVPLVGSGKFVT 128

Query:   128 AAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYES 187
              A+V +DGQ L++S+ D+  Q W V  AI+DK+VLQWML L QIGLDVVRTDR L FYES
Sbjct:   129 MAVVAEDGQPLEESSVDN--QEWVVKTAITDKRVLQWMLVLSQIGLDVVRTDRYLCFYES 186

Query:   188 ETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFR 247
             E+NQA+LWD+L+IY+W++ DIGYVQGMNDICSPMI+LLE+EADAFWCFE  MRRLRENFR
Sbjct:   187 ESNQARLWDILSIYTWLNPDIGYVQGMNDICSPMIILLEDEADAFWCFERAMRRLRENFR 246

Query:   248 TNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALY 307
             T    +GVQ+QL  LSQ+I+T+DP+LHQHLEDLDGGEYLFA RMLMVLFRREFSF+DALY
Sbjct:   247 TTATSMGVQTQLGMLSQVIKTVDPRLHQHLEDLDGGEYLFAIRMLMVLFRREFSFLDALY 306

Query:   308 LWEV 311
             LWE+
Sbjct:   307 LWEL 310
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
TAIR|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8K8E1 TBC1D15 "TBC1 domain family, member 15, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPD8 Tbc1d15 "Protein Tbc1d15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query330
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 2e-36
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 2e-36
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 1e-29
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information 
 Score =  130 bits (328), Expect = 2e-36
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 7/183 (3%)

Query: 141 SNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAI 200
               S  +        S    L+      QI  DV RT     F+++   Q +L  +L  
Sbjct: 12  LGNLSESKQRDSVSQYSKLLKLEDSPDEEQIEKDVPRTFPHHFFFKNGEGQQQLRRILKA 71

Query: 201 YSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRR-LRENFRTNTGMIGVQSQL 259
           YS  + D+GY QGMN I +P+++++ +E +AFWCF   +   LR+ F  +    G+Q  L
Sbjct: 72  YSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEYLLRDFFLPS--FPGLQRDL 129

Query: 260 STLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTY 319
               ++++  DP+L++HL+ L     LFA +  + LF RE      L LW+    LF   
Sbjct: 130 YVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFARELPLETVLRLWD----LFLEG 185

Query: 320 LSF 322
             F
Sbjct: 186 GKF 188

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 330
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.96
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.94
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.94
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.93
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.92
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.89
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.88
KOG2595 395 consensus Predicted GTPase activator protein [Sign 99.87
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.49
KOG1648813 consensus Uncharacterized conserved protein, conta 99.36
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.19
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 97.21
KOG2224781 consensus Uncharacterized conserved protein, conta 89.36
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 81.12
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=7.2e-42  Score=299.65  Aligned_cols=267  Identities=27%  Similarity=0.472  Sum_probs=210.6

Q ss_pred             HHHHhhcc-CCCcCHHHHHHHHHhCCCC--CCchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 020148           45 RWHAAFSE-DGHLDIAKVLRRIQRGGIH--PSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG  121 (330)
Q Consensus        45 ~W~~~l~~-~~~i~~~kll~~~~~~Gip--~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~  121 (330)
                      ..+..+.. +..+|..+ +++++..|+|  ..+|+.+|++|||++|+..+.|  ...+.+++..|..++++...   ..+
T Consensus        11 ~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w--~s~La~~R~~Y~q~i~e~v~---epg   84 (370)
T KOG4567|consen   11 SIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKW--TSFLAKKRSLYKQFIEEIVD---EPG   84 (370)
T ss_pred             hHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhhhhh--HHHHHHHHHHHHHHHHHhcc---Ccc
Confidence            44455554 34478888 7777778999  7999999999999999998865  57778899999998887421   111


Q ss_pred             CCccccccccccCCCCcCCCCCcccCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCcCCCChh------------
Q 020148          122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESET------------  189 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~------------  189 (330)
                        ........+..++.-++|.+-.+.+.|        ....+..+.+.||++||.||.|+..+|+...            
T Consensus        85 --~~~~~~~v~~~D~~~dhPls~~~~sdw--------n~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~  154 (370)
T KOG4567|consen   85 --KKDNSKKVDSNDTDEDHPLSLGPTSDW--------NTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRR  154 (370)
T ss_pred             --ccccccccccCcccccCCCCCCchhhH--------HHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHh
Confidence              111111111222344456654444443        3344445788999999999999999886520            


Q ss_pred             ---------------hHHHHHHHHHHHHHhcCCCCccCChhHHHHHHHHhhc----------chhHHHHHHHHHHHHHHh
Q 020148          190 ---------------NQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLE----------NEADAFWCFEHTMRRLRE  244 (330)
Q Consensus       190 ---------------~~~~L~~IL~~y~~~~~~igY~QGm~~i~a~ll~~~~----------~E~~aF~~f~~l~~~~~~  244 (330)
                                     ......|||..||..||.+||+||||.|+||+++|+.          .|++||+||+.+|..+++
T Consensus       155 ~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirD  234 (370)
T KOG4567|consen  155 RINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRD  234 (370)
T ss_pred             hhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHH
Confidence                           1233578999999999999999999999999999983          499999999999999999


Q ss_pred             hhcCC--CChhhHHHHHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHHHHHHhccccCCccchhhccc---ccccchhhh
Q 020148          245 NFRTN--TGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE---VRRNLFFTY  319 (330)
Q Consensus       245 ~~~~~--~~~~~~~~~~~~~~~lL~~~~p~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD---~~~~~f~~~  319 (330)
                      +|..+  ++..|++-.+..+..+|+.+|-+||.||+..+|.|.+|++||+++|++.+||+++|+||||   .++.+|.+.
T Consensus       235 nf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~L  314 (370)
T KOG4567|consen  235 NFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFL  314 (370)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHH
Confidence            99763  5666888889999999999999999999999999999999999999999999999999999   799998888


Q ss_pred             hhhhhhhh
Q 020148          320 LSFSENLV  327 (330)
Q Consensus       320 ~~~~~~l~  327 (330)
                      .+.|-..+
T Consensus       315 l~iCcsml  322 (370)
T KOG4567|consen  315 LYICCSML  322 (370)
T ss_pred             HHHHHHHH
Confidence            86665544

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query330
2g77_A 410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 3e-13
1fkm_A 396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 2e-12
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 6e-11
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 2e-08
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 2e-08
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 3e-08
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 2e-04
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 3e-04
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 37/181 (20%)
Query: 169 HQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMI------ 222
           HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND+ +P        
Sbjct: 108 HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTE 167
Query: 223 ----------------------VLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLS 260
                                  + + EAD FWC    + ++ +N+    G  G+  Q+ 
Sbjct: 168 YLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI--HGQPGILRQVK 225
Query: 261 TLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEVRRNLFFTYL 320
            LSQ+++ ID  L+ H ++       FAFR +  L  REF     + +W+       TYL
Sbjct: 226 NLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD-------TYL 278
Query: 321 S 321
           S
Sbjct: 279 S 279
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query330
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 5e-62
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 4e-51
2qq8_A334 TBC1 domain family member 14; structural genomics 2e-26
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 1e-24
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 2e-23
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 9e-23
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  201 bits (513), Expect = 5e-62
 Identities = 60/322 (18%), Positives = 113/322 (35%), Gaps = 81/322 (25%)

Query: 39  KTLSAR--RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERN 96
            ++  R  ++     +   ++    LR+I   GI    + +VW+ L+G    N+    + 
Sbjct: 2   NSIIQRISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQE 58

Query: 97  QIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAI 156
              Q++R++Y                                         +    D   
Sbjct: 59  GFLQRKRKEYRDSL-------------------------------------KHTFSDQHS 81

Query: 157 SDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMND 216
            D          HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND
Sbjct: 82  RDIPTW------HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGIND 135

Query: 217 ICSPMIVLL----------------------------ENEADAFWCFEHTMRRLRENFRT 248
           + +P                                 + EAD FWC    + ++ +N+  
Sbjct: 136 LVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH 195

Query: 249 NTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYL 308
             G  G+  Q+  LSQ+++ ID  L+ H ++       FAFR +  L  REF     + +
Sbjct: 196 --GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRM 253

Query: 309 WEVRRNLFFTYLSFSENLVLLC 330
           W+              +   + 
Sbjct: 254 WDT---YLSETSQEVTSSYSMS 272
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query330
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
Probab=100.00  E-value=1.6e-46  Score=351.29  Aligned_cols=226  Identities=23%  Similarity=0.469  Sum_probs=194.6

Q ss_pred             CHHHHHHhhccCCCcCHHHHHHHHHhCCCCCCchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 020148           42 SARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG  121 (330)
Q Consensus        42 ~~~~W~~~l~~~~~i~~~kll~~~~~~Gip~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~  121 (330)
                      ..++|.+++++. .+|.++ ++.++++|||+.+|+.||++|+|++|.+.+  +|......++..|.++++++.....   
T Consensus        25 r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~---   97 (345)
T 2qfz_A           25 RLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANVD--RRPATLQRKQKEYFAFIEHYYDSRN---   97 (345)
T ss_dssp             HHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBGG--GHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHHHHHHHHHhhcCCC---
Confidence            457999999864 578888 666778999999999999999999987664  5567778889999999988632100   


Q ss_pred             CCccccccccccCCCCcCCCCCcccCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCcCCCChhhHHHHHHHHHHH
Q 020148          122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIY  201 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y  201 (330)
                                         +                +    ...+..+||++||.||+|+ ++|+.+.+++.|+|||.+|
T Consensus        98 -------------------~----------------~----~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~y  137 (345)
T 2qfz_A           98 -------------------D----------------E----VHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIW  137 (345)
T ss_dssp             ------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHH
T ss_pred             -------------------c----------------c----chHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHH
Confidence                               0                0    0015678999999999999 9999998999999999999


Q ss_pred             HHhcCCCCccCChhHHHHHHHHhhc------------------------chhHHHHHHHHHHHHHHhhhcCCCChhhHHH
Q 020148          202 SWVDNDIGYVQGMNDICSPMIVLLE------------------------NEADAFWCFEHTMRRLRENFRTNTGMIGVQS  257 (330)
Q Consensus       202 ~~~~~~igY~QGm~~i~a~ll~~~~------------------------~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~  257 (330)
                      +.+||++|||||||+|||+|++++.                        +|++|||||+++|++++++|.  .+++|+..
T Consensus       138 a~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~--~~~~~i~~  215 (345)
T 2qfz_A          138 AIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYT--FAQPGIQM  215 (345)
T ss_dssp             HHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSS--TTCHHHHH
T ss_pred             HHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccc--cCcHHHHH
Confidence            9999999999999999999998874                        399999999999999877665  45789999


Q ss_pred             HHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHHHHHHhccccCCccchhhccc---ccccch
Q 020148          258 QLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE---VRRNLF  316 (330)
Q Consensus       258 ~~~~~~~lL~~~~p~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD---~~~~~f  316 (330)
                      .+..++.+|+.++|+||+||.+.|+++.+|+++||+|+|+++||+++++||||   .+++.|
T Consensus       216 ~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~  277 (345)
T 2qfz_A          216 KVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF  277 (345)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999999999999999999999999999999999999   455554
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 330
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 3e-21
d1fkma2 188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 1e-13
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.6 bits (216), Expect = 3e-21
 Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 74/230 (32%)

Query: 45  RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQ 104
           ++     +   ++    LR+I   GI    + +VW+ L+G    N+  +E    R+++  
Sbjct: 9   KFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEY 67

Query: 105 QYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQW 164
           + +   T                        Q  +D                        
Sbjct: 68  RDSLKHTFSD---------------------QHSRDIPT--------------------- 85

Query: 165 MLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMI-- 222
               HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND+ +P    
Sbjct: 86  ---WHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFET 142

Query: 223 --------------------------VLLENEADAFWCFEHTMRRLRENF 246
                                      + + EAD FWC    + ++ +N+
Sbjct: 143 FLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query330
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
d1fkma2 188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.34
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-35  Score=250.21  Aligned_cols=158  Identities=24%  Similarity=0.477  Sum_probs=133.3

Q ss_pred             HHHHHhhccCCCcCHHHHHHHHHhCCCCCCchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 020148           44 RRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSG  123 (330)
Q Consensus        44 ~~W~~~l~~~~~i~~~kll~~~~~~Gip~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~  123 (330)
                      .+|.+++.+.+.++.++ +|+++++|||+++|+.||++|+|++|.+++.+  .....++++.|..+........      
T Consensus         8 ~~~~~~l~~~~~i~~~~-lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~------   78 (194)
T d1fkma1           8 SKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQ--EGFLQRKRKEYRDSLKHTFSDQ------   78 (194)
T ss_dssp             HHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGH--HHHHHHHHHHHHHHHHHTSSSS------
T ss_pred             HHHHHHhcccCCCCHHH-HHHHHHcCCChHHHHHHHHHHHhhcCCchhhH--HHHHHHHhhhhhhhhhhhhhcc------
Confidence            68999998878889988 56778899999999999999999999988754  4566778888888776532100      


Q ss_pred             ccccccccccCCCCcCCCCCcccCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCcCCCChhhHHHHHHHHHHHHH
Q 020148          124 KFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSW  203 (330)
Q Consensus       124 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y~~  203 (330)
                                                      . ..    ..+..+||++||.||+|++++|+.+++++.|+|||.+|+.
T Consensus        79 --------------------------------~-~~----~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~ya~  121 (194)
T d1fkma1          79 --------------------------------H-SR----DIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAI  121 (194)
T ss_dssp             --------------------------------C-ST----HHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------c-cc----chHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHH
Confidence                                            0 00    1256789999999999999999999999999999999999


Q ss_pred             hcCCCCccCChhHHHHHHHHhhc----------------------------chhHHHHHHHHHHHHHHhhhc
Q 020148          204 VDNDIGYVQGMNDICSPMIVLLE----------------------------NEADAFWCFEHTMRRLRENFR  247 (330)
Q Consensus       204 ~~~~igY~QGm~~i~a~ll~~~~----------------------------~E~~aF~~f~~l~~~~~~~~~  247 (330)
                      +||++|||||||+|||+|++++.                            .|++|||||+++|++++.+|.
T Consensus       122 ~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         122 RHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             HCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             HCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence            99999999999999999998762                            289999999999999887764
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure