Citrus Sinensis ID: 020164

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDNDRYEGRYGNDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDRYSRDVYRDDDYRGRSRSVDAYQDGSSRNSDDGQLSSRGLERKFSEQNIGAPPSYEEAVSESRSPVHSERYLSRNIVMQSDCAYNYTHQCVQL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHccHcHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHcccEcccccEccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHEEEcccccccccEEEcc
Coil and Loop (DISEMBL)
MKKAFDQTFRDIKRGVNKKVLKVPGIEqkvldatsnepwgphgtLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSyqistlsdfqyidssgrdqgsnvrkKSQSLVALVNDKERIIEVRQKAAANRDkfrnttaggmyrpgsysssggngdrydndryegrygnddqngygrereygygyrdddrssrngdsysrdgdrygrdyedrysrdvyrdddyrgrsrsvdayqdgssrnsddgqlssrglerkfseqnigappsyeeavsesrspvhserylsrnivmqsdcaynythqcvql
Flexible Loop (DISEMBL)
mkkafdqtfrdikrgvnkkvlkvpgIEQKVLdatsnepwgpHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSgrdqgsnvrkksqslvalvndkeriIEVRqkaaanrdkfrnttaggmyrpgsysssggngdrYDNDRYEgrygnddqngygrereygygyrdddrssrngdsysrdgdrygrdyedrysrdvyrdddyrgrsrsvdayqdgssrnsddgqlssrglerkfseqnigappsyeeavsesrspVHSERYLSRNIVMQSDCAYNYTHQCVQL
Low Complexity Region (SEG)
MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDNDRYEGRYGNDDQngygrereygygyrdddrssrngdsysrdgdrygrdyedrysrdvyrdddyrgrsrsvdAYQDGSSRNSDDGQLSSRGLERKFSEQNIGAPPSYEEAVSESRSPVHSERYLSRNIVMQSDCAYNYTHQCVQL
Disordered region (IsUnstruct)
***********IKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYI********************LV*****II****************************************************************************************************************************************************************YLSRNIVMQSDCAYNYTHQC***
Disordered Region (DISOPRED)
***********IKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAA*************************************************************************************************************************************************************************THQCVQL
Disordered Region (DISEMBL)
MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSS*************SLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDNDRYEGRYGNDDQNGYGREREYGYGYRD**************GDRYGRDYEDRYSRDVYRDDDYRGRSRSVDA*****************GLERKFSEQN********************ERYLSRNIVMQSDCAYNYTHQCVQL
Disordered Region (DISPRO)
*KKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT*************************************************************************************************************************************SESRSPVHSERYLSRNIVMQSDCAYNYTHQCVQL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDNDRYEGRYGNDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDRYSRDVYRDDDYRGRSRSVDAYQDGSSRNSDDGQLSSRGLERKFSEQNIGAPPSYEEAVSESRSPVHSERYLSRNIVMQSDCAYNYTHQCVQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q67YI9	895	Clathrin interactor EPSIN	yes	no	0.860	0.317	0.712	1e-123
Q93YP4	1024	Clathrin interactor EPSIN	no	no	0.866	0.279	0.692	1e-121
Q8VY07	560	Clathrin interactor EPSIN	no	no	0.748	0.441	0.460	1e-60
O95208	641	Epsin-2 OS=Homo sapiens G	no	no	0.424	0.218	0.514	6e-38
Q8CHU3	595	Epsin-2 OS=Mus musculus G	yes	no	0.424	0.235	0.514	1e-37
Q9Z1Z3	583	Epsin-2 OS=Rattus norvegi	yes	no	0.424	0.240	0.514	2e-37
Q54EH1	686	Epsin OS=Dictyostelium di	yes	no	0.445	0.214	0.496	4e-37
Q80VP1	575	Epsin-1 OS=Mus musculus G	no	no	0.406	0.233	0.514	4e-37
Q9Y6I3	576	Epsin-1 OS=Homo sapiens G	no	no	0.406	0.232	0.514	5e-37
O88339	575	Epsin-1 OS=Rattus norvegi	no	no	0.406	0.233	0.514	5e-37

>sp|Q67YI9|EPN2_ARATH Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana GN=EPSIN2 PE=1 SV=1

 Score =  440 bits (1131), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/330 (71%), Positives = 261/330 (79%), Gaps = 46/330 (13%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKK F QT RD+KR VNKKVLKVPG+EQKVLDATSNEPWGPHG+LLAD+AQA+RNYHEYQ
Sbjct: 1   MKKVFGQTVRDLKREVNKKVLKVPGVEQKVLDATSNEPWGPHGSLLADLAQASRNYHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           +I+ VIWKR++DTGKNWRHVYKALTVLEY+V HGSERVID+IRE +YQISTLSDFQYIDS
Sbjct: 61  LIMVVIWKRLSDTGKNWRHVYKALTVLEYMVGHGSERVIDEIRERAYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
            GRDQGSNVRKKSQSLVALVNDKERI EVRQKAAANRDK+R++  GGMY+P     SGG 
Sbjct: 121 GGRDQGSNVRKKSQSLVALVNDKERIAEVRQKAAANRDKYRSSAPGGMYKP-----SGGY 175

Query: 181 GDRYDNDRYEGRYGNDDQ--NGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDR 238
           GD+YD       YG+ D+  + YGRERE  YGYRDDDR+       SRDGDR+ RD EDR
Sbjct: 176 GDKYD-------YGSRDEERSSYGRERE--YGYRDDDRN-------SRDGDRHSRDSEDR 219

Query: 239 YSRDVYRDDDYRGRSRSVDAYQDGS-SRNS-----DDGQLSSR---------------GL 277
           Y RD  RDDDYRGRSRSVD Y  GS  R+S     DDG  SSR               GL
Sbjct: 220 YGRDGNRDDDYRGRSRSVDNY--GSRGRSSEREREDDGHSSSRGSGARADDNSQDGRGGL 277

Query: 278 ERKFSEQNIGAPPSYEEAVSESRSPVHSER 307
           +RKFSEQNIGAPPSYEEAVS+SRSPV+SER
Sbjct: 278 QRKFSEQNIGAPPSYEEAVSDSRSPVYSER 307

May have a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes. Stimulates clathrin assembly (By similarity). Binds to membranes enriched in phosphatidylinositol 3-phosphate (PtdIns(3)P). Plays an important role in protein trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93YP4|EPN3_ARATH Clathrin interactor EPSIN 3 OS=Arabidopsis thaliana GN=EPSIN3 PE=2 SV=1

 Score =  434 bits (1117), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/332 (69%), Positives = 261/332 (78%), Gaps = 46/332 (13%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKKAF QT RD+KRGVNKKVLKVPGIEQKVLDATSNE WGPHG+LLADIA A+RNYHEYQ
Sbjct: 1   MKKAFGQTVRDLKRGVNKKVLKVPGIEQKVLDATSNESWGPHGSLLADIAHASRNYHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           + +GV+WKR++D+GKNWRHVYKALTVLEY+V HGSERVI++++EH+YQI+TLS FQYIDS
Sbjct: 61  ITMGVLWKRLSDSGKNWRHVYKALTVLEYMVGHGSERVIEEVKEHAYQITTLSGFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
           SG+DQGSNVRKK+QSLVALVNDKERI EVR+KAAANRDK+ N+    M+RP     SGG 
Sbjct: 121 SGKDQGSNVRKKAQSLVALVNDKERITEVREKAAANRDKYHNS----MHRP-----SGGY 171

Query: 181 GDRYDNDRYEGRYGNDDQ--NGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDR 238
           GD+YD   YEGRYG+ D+  + YG+ERE  YGYRDDDR+       SRDGDRY RD EDR
Sbjct: 172 GDKYD---YEGRYGDRDEGRSSYGKERE--YGYRDDDRN-------SRDGDRYSRDSEDR 219

Query: 239 YSRDVYRDDDYRGRSRSVDAYQDGSSRNS-------DDGQLSSR---------------G 276
           Y RD   DD+YRGRSRSVD Y     R+S       DDGQ SSR               G
Sbjct: 220 YGRDGNTDDEYRGRSRSVDNYNGSRGRSSDRERPIEDDGQSSSRDSGAPADDHSQDGRGG 279

Query: 277 LERKFSEQNIG-APPSYEEAVSESRSPVHSER 307
           LERKFSEQNIG APPSYEEAVSESRSPV+SER
Sbjct: 280 LERKFSEQNIGAAPPSYEEAVSESRSPVYSER 311

Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). May have a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes. Stimulates clathrin assembly.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY07|EPN1_ARATH Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana GN=EPSIN1 PE=1 SV=1

 Score =  233 bits (595), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/254 (46%), Positives = 172/254 (67%), Gaps = 7/254 (2%)

Query: 3   KAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMI 62
           K FDQT R+IKR VN KVLKVP +EQKVLDAT NEPWGPHGT LA+IAQAT+ + E QM+
Sbjct: 5   KVFDQTVREIKREVNLKVLKVPEMEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMV 64

Query: 63  IGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSG 122
           + V+W R+++TGK+WR+VYKAL V++YL+++GSER +D+I EH+YQIS+L+ F+Y++ +G
Sbjct: 65  MSVLWTRLSETGKDWRYVYKALAVIDYLISNGSERAVDEIIEHTYQISSLTSFEYVEPNG 124

Query: 123 RDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMY---RPGSYSSSGG 179
           +D G NVRKK++++VAL+N+KE+I E+R KA ANR+K+   ++ G+       +      
Sbjct: 125 KDVGINVRKKAENIVALLNNKEKISEIRDKAVANRNKYVGLSSTGITYKSGSSASFGGSF 184

Query: 180 NGDRYDNDRYEGRYGNDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDRY 239
                + D Y+ R   +D+N Y   ++   G + +++S  +  S+S    RYG    D  
Sbjct: 185 QSGSSNFDSYKDRDSREDKNDYESFQKSRRGVKTEEQSYTSKKSFS----RYGSTDHDNL 240

Query: 240 SRDVYRDDDYRGRS 253
           S      D  + RS
Sbjct: 241 SSGKKSPDSAKHRS 254

May have a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes. Stimulates clathrin assembly (By similarity). Seems to not binds to phospholipids. Plays an important role in the vacuolar trafficking of soluble cargo proteins at the trans-Golgi network.

Arabidopsis thaliana (taxid: 3702)

>sp|O95208|EPN2_HUMAN Epsin-2 OS=Homo sapiens GN=EPN2 PE=1 SV=3

 Score =  158 bits (399), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 97/140 (69%)

Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
           E KV +ATSN+PWGP  +L+ +IA  T N   +  I+ ++WKR+ND GKNWRHVYKALT+
Sbjct: 21  EIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVWKRLNDHGKNWRHVYKALTL 80

Query: 87  LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
           L+YL+  GSERV    RE+ + I TL DFQYID  G+DQG NVR+KS+ LVAL+ D+ER+
Sbjct: 81  LDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERL 140

Query: 147 IEVRQKAAANRDKFRNTTAG 166
              R +A   +++      G
Sbjct: 141 KAERAQALKTKERMAQVATG 160

Plays a role in the formation of clathrin-coated invaginations and endocytosis.

Homo sapiens (taxid: 9606)

>sp|Q8CHU3|EPN2_MOUSE Epsin-2 OS=Mus musculus GN=Epn2 PE=1 SV=1

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 97/140 (69%)

Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
           E KV +ATSN+PWGP  +L+ +IA  T N   +  I+ ++WKR+ND GKNWRHVYKALT+
Sbjct: 21  EIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVWKRLNDHGKNWRHVYKALTL 80

Query: 87  LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
           L+YL+  GSERV    RE+ + I TL DFQYID  G+DQG NVR+KS+ LVAL+ D+ER+
Sbjct: 81  LDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERL 140

Query: 147 IEVRQKAAANRDKFRNTTAG 166
              R +A   +++      G
Sbjct: 141 KVERVQALKTKERMAQVATG 160

Plays a role in the formation of clathrin-coated invaginations and endocytosis.

Mus musculus (taxid: 10090)

>sp|Q9Z1Z3|EPN2_RAT Epsin-2 OS=Rattus norvegicus GN=Epn2 PE=1 SV=1

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 97/140 (69%)

Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
           E KV +ATSN+PWGP  +L+ +IA  T N   +  I+ ++WKR+ND GKNWRHVYKALT+
Sbjct: 21  EIKVREATSNDPWGPSSSLMTEIADLTYNVVRFSEIMSMVWKRLNDHGKNWRHVYKALTL 80

Query: 87  LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
           L+YL+  GSERV    RE+ + I TL DFQYID  G+DQG NVR+KS+ LVAL+ D+ER+
Sbjct: 81  LDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERL 140

Query: 147 IEVRQKAAANRDKFRNTTAG 166
              R +A   +++      G
Sbjct: 141 KVERVQALKTKERMAQVATG 160

Plays a role in the formation of clathrin-coated invaginations and endocytosis.

Rattus norvegicus (taxid: 10116)

>sp|Q54EH1|EPN_DICDI Epsin OS=Dictyostelium discoideum GN=epnA PE=3 SV=1

 Score =  155 bits (392), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 109/149 (73%), Gaps = 2/149 (1%)

Query: 12  IKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIN 71
           IK+G +  VL  P IE+KV DATSN+ WGP GT + +I++A+ NY  + +I+GVIWKRIN
Sbjct: 9   IKKGKDA-VLNTPEIERKVRDATSNDKWGPSGTQMQEISRASYNYECFPIIMGVIWKRIN 67

Query: 72  DTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRK 131
           D GK WRHVYK+L +++YLV +GS +VI D R H+ +I TL +FQYI+   +D G +VR+
Sbjct: 68  DPGKFWRHVYKSLLLIDYLVRNGSPQVIRDCRHHTMEIKTLVEFQYIEEE-KDVGLSVRE 126

Query: 132 KSQSLVALVNDKERIIEVRQKAAANRDKF 160
           +++ ++ L+ D +RI E R KA  N++K+
Sbjct: 127 RAKQVIDLLQDDQRIKEERDKAKTNQNKY 155

Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2).

Dictyostelium discoideum (taxid: 44689)

>sp|Q80VP1|EPN1_MOUSE Epsin-1 OS=Mus musculus GN=Epn1 PE=1 SV=3

 Score =  155 bits (392), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 97/134 (72%)

Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
           E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +IWKR+ND GKNWRHVYKA+T+
Sbjct: 21  EIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTL 80

Query: 87  LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
           +EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 81  MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 140

Query: 147 IEVRQKAAANRDKF 160
            E R  A   ++K 
Sbjct: 141 REERAHALKTKEKL 154

Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). Modifies membrane curvature and facilitates the formation of clathrin-coated invaginations (By similarity). Regulates receptor-mediated endocytosis.

Mus musculus (taxid: 10090)

>sp|Q9Y6I3|EPN1_HUMAN Epsin-1 OS=Homo sapiens GN=EPN1 PE=1 SV=2

 Score =  155 bits (391), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 97/134 (72%)

Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
           E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +IWKR+ND GKNWRHVYKA+T+
Sbjct: 21  EIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTL 80

Query: 87  LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
           +EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 81  MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 140

Query: 147 IEVRQKAAANRDKF 160
            E R  A   ++K 
Sbjct: 141 REERAHALKTKEKL 154

Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). Modifies membrane curvature and facilitates the formation of clathrin-coated invaginations (By similarity). Regulates receptor-mediated endocytosis.

Homo sapiens (taxid: 9606)

>sp|O88339|EPN1_RAT Epsin-1 OS=Rattus norvegicus GN=Epn1 PE=1 SV=1

 Score =  155 bits (391), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 97/134 (72%)

Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
           E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +IWKR+ND GKNWRHVYKA+T+
Sbjct: 21  EIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTL 80

Query: 87  LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
           +EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 81  MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 140

Query: 147 IEVRQKAAANRDKF 160
            E R  A   ++K 
Sbjct: 141 REERAHALKTKEKL 154

Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). Modifies membrane curvature and facilitates the formation of clathrin-coated invaginations. Regulates receptor-mediated endocytosis.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
255583860	902	Epsin-2, putative [Ricinus communis] gi|	0.903	0.330	0.796	1e-140
356527459	922	PREDICTED: clathrin interactor EPSIN 2-l	0.9	0.322	0.779	1e-135
356567296	988	PREDICTED: clathrin interactor EPSIN 3-l	0.9	0.300	0.770	1e-133
359478084	942	PREDICTED: clathrin interactor EPSIN 2-l	0.924	0.323	0.774	1e-133
297745158	804	unnamed protein product [Vitis vinifera]	0.924	0.379	0.774	1e-131
224069034	893	predicted protein [Populus trichocarpa]	0.896	0.331	0.741	1e-129
357501475	969	Epsin-like protein [Medicago truncatula]	0.887	0.302	0.746	1e-127
30689266	895	clathrin interactor EPSIN 2 [Arabidopsis	0.860	0.317	0.712	1e-121
449468762	841	PREDICTED: clathrin interactor EPSIN 2-l	0.881	0.346	0.713	1e-121
79324901	646	clathrin interactor EPSIN 2 [Arabidopsis	0.866	0.442	0.704	1e-120

>gi|255583860|ref|XP_002532681.1| Epsin-2, putative [Ricinus communis] gi|223527594|gb|EEF29709.1| Epsin-2, putative [Ricinus communis]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/329 (79%), Positives = 279/329 (84%), Gaps = 31/329 (9%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKK FDQT RDIKR VNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ
Sbjct: 1   MKKVFDQTVRDIKREVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           MI+ VIWKRINDTGKNWRHVYK LTVLEYLVA+GSERVID+IREH+YQISTLSDFQYIDS
Sbjct: 61  MIMAVIWKRINDTGKNWRHVYKGLTVLEYLVANGSERVIDEIREHAYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
           SGRDQGSNVRKKSQSLV LVNDKERIIEVRQKAAANR+KFRNT+AGGMY+PGSY      
Sbjct: 121 SGRDQGSNVRKKSQSLVVLVNDKERIIEVRQKAAANREKFRNTSAGGMYKPGSY------ 174

Query: 181 GDRYDNDRYEGRYG--NDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDR 238
           GDRYD++RYEGRYG  ++D+NGYG  RE  Y YRDDDR  + GDSYSRDGDRYGRD E+R
Sbjct: 175 GDRYDDERYEGRYGSRDEDRNGYGYGRERDYNYRDDDRYGKYGDSYSRDGDRYGRDNEER 234

Query: 239 YSRDVYRDDDYRGRSRSVDAYQDGS-SRNS-----DDGQLSSRG--------------LE 278
           YSRD YRDDDY+GRSRS+D Y  GS SR+S     DDGQ SSRG              LE
Sbjct: 235 YSRDGYRDDDYQGRSRSIDDY--GSRSRSSDRGADDDGQSSSRGSGAKADDQSQDGRRLE 292

Query: 279 RKFSEQNIGAPPSYEEAVSESRSPVHSER 307
           RKFSEQNI APPSYEEAVSESRSP HSER
Sbjct: 293 RKFSEQNI-APPSYEEAVSESRSPAHSER 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527459|ref|XP_003532328.1| PREDICTED: clathrin interactor EPSIN 2-like [Glycine max]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/327 (77%), Positives = 269/327 (82%), Gaps = 30/327 (9%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKK   QT RD+KR VNKKVLKVPGIEQKVLDATSNEPWGPHG+LLADIAQATRN HEYQ
Sbjct: 1   MKKVIGQTVRDLKREVNKKVLKVPGIEQKVLDATSNEPWGPHGSLLADIAQATRNPHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           MI+ VIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID+IREH+YQISTLSDFQYIDS
Sbjct: 61  MIMSVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDEIREHAYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
           SGRDQG+NVRKKSQSLV LVNDKERIIEVRQKAAANRDKFRN+TAGGMYRPGSYSSSG  
Sbjct: 121 SGRDQGNNVRKKSQSLVVLVNDKERIIEVRQKAAANRDKFRNSTAGGMYRPGSYSSSGAY 180

Query: 181 GDRYDNDRYEGRYGNDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDRYS 240
           GDRYD+DRY  R   +D+NGYG  +E  +G RDDDR       +SRDGDRYGRDYEDRY 
Sbjct: 181 GDRYDDDRYGSR--EEDRNGYGYGKEREWGNRDDDR-------HSRDGDRYGRDYEDRYG 231

Query: 241 RDVYRDDDYRGRSRSVDAYQ-------DGSSRNSDDGQLSSRG-------------LERK 280
           RD YRDDDYRGRSRSVD YQ           R  DDGQ SSRG             LERK
Sbjct: 232 RDGYRDDDYRGRSRSVD-YQYDTRSRSSDRDRYDDDGQHSSRGSNAKAEDQSLEARLERK 290

Query: 281 FSEQNIGAPPSYEEAVSESRSPVHSER 307
            SEQN+GAPPSYEEAVSESRSPVHSER
Sbjct: 291 LSEQNMGAPPSYEEAVSESRSPVHSER 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567296|ref|XP_003551857.1| PREDICTED: clathrin interactor EPSIN 3-like [Glycine max]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/327 (77%), Positives = 266/327 (81%), Gaps = 30/327 (9%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKK   QT RD+KR VNKKVLKVPGIEQKVLDATSNEPWGPHG+LLADIAQATRN HEYQ
Sbjct: 1   MKKVIGQTVRDLKREVNKKVLKVPGIEQKVLDATSNEPWGPHGSLLADIAQATRNPHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           MI+ VIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID+IREH+YQISTLSDFQYIDS
Sbjct: 61  MIMSVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDEIREHAYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
           SGRDQG+NVRKKSQSLV LVNDKERIIEVRQKAAANRDKFRN  AGGMYRPGS+SSSG  
Sbjct: 121 SGRDQGNNVRKKSQSLVILVNDKERIIEVRQKAAANRDKFRNNAAGGMYRPGSHSSSGAY 180

Query: 181 GDRYDNDRYEGRYGNDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDRYS 240
           GDRYD+DRY  R   +D+NGYG  RE  +G RDDD+       +SRDGDRYGRDYEDRY 
Sbjct: 181 GDRYDDDRYGSR--EEDRNGYGYGREREWGNRDDDQ-------HSRDGDRYGRDYEDRYG 231

Query: 241 RDVYRDDDYRGRSRSVDAYQ-------DGSSRNSDDGQLSSRG-------------LERK 280
           RD YRDDDYRGRSRSVD YQ           R  DDGQ SSRG             LERK
Sbjct: 232 RDGYRDDDYRGRSRSVD-YQYDTRSRSSDRDRCDDDGQHSSRGSNAKAEDQSLEARLERK 290

Query: 281 FSEQNIGAPPSYEEAVSESRSPVHSER 307
            SEQN+GAPPSYEEAV ESRSPVHSER
Sbjct: 291 LSEQNMGAPPSYEEAVGESRSPVHSER 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478084|ref|XP_002267689.2| PREDICTED: clathrin interactor EPSIN 2-like [Vitis vinifera]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/332 (77%), Positives = 276/332 (83%), Gaps = 27/332 (8%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKKA  QT RD+KR VNKKVLKVPGIEQKVLDATSNEPWGPHGT LADIAQATRNYHEYQ
Sbjct: 1   MKKAIGQTVRDLKREVNKKVLKVPGIEQKVLDATSNEPWGPHGTHLADIAQATRNYHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           MI+ VIWKRINDTGKNWRHVYKALTVLEYLV HGSERVID+IREH YQISTLSDFQYIDS
Sbjct: 61  MIMSVIWKRINDTGKNWRHVYKALTVLEYLVGHGSERVIDEIREHIYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT-TAGGMYRPGSYSSSGG 179
           SGRDQGSNVRKKSQSLVALVNDKERI EVRQKAAANRDKFRNT +AGGMYRP SYSSSGG
Sbjct: 121 SGRDQGSNVRKKSQSLVALVNDKERIQEVRQKAAANRDKFRNTNSAGGMYRPSSYSSSGG 180

Query: 180 NGDRYDNDRYEGRYGND-DQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDR 238
            GDRYD+DRYEGRYG D D+NGYGRERE  +G RDDDR  RNGDSY  +GDRYGRD ++R
Sbjct: 181 YGDRYDDDRYEGRYGRDEDRNGYGRERE--WGSRDDDRYGRNGDSYGPEGDRYGRDSDER 238

Query: 239 YSRDVYRDDDYRGRSRSVDAYQDGS-SRNSD---------DGQLSSRG------------ 276
           Y RD Y+DDDYRGRSRS + YQ GS SR++D         +   SSRG            
Sbjct: 239 YGRDGYKDDDYRGRSRSNEDYQYGSRSRSADRDRDRAFDEESNHSSRGGARTDEHPQYGR 298

Query: 277 -LERKFSEQNIGAPPSYEEAVSESRSPVHSER 307
            LERKFSEQN+ APPSYEEAV+++ SPVH ER
Sbjct: 299 QLERKFSEQNLDAPPSYEEAVADAHSPVHDER 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745158|emb|CBI39150.3| unnamed protein product [Vitis vinifera]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/332 (77%), Positives = 276/332 (83%), Gaps = 27/332 (8%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKKA  QT RD+KR VNKKVLKVPGIEQKVLDATSNEPWGPHGT LADIAQATRNYHEYQ
Sbjct: 1   MKKAIGQTVRDLKREVNKKVLKVPGIEQKVLDATSNEPWGPHGTHLADIAQATRNYHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           MI+ VIWKRINDTGKNWRHVYKALTVLEYLV HGSERVID+IREH YQISTLSDFQYIDS
Sbjct: 61  MIMSVIWKRINDTGKNWRHVYKALTVLEYLVGHGSERVIDEIREHIYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT-TAGGMYRPGSYSSSGG 179
           SGRDQGSNVRKKSQSLVALVNDKERI EVRQKAAANRDKFRNT +AGGMYRP SYSSSGG
Sbjct: 121 SGRDQGSNVRKKSQSLVALVNDKERIQEVRQKAAANRDKFRNTNSAGGMYRPSSYSSSGG 180

Query: 180 NGDRYDNDRYEGRYGND-DQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDR 238
            GDRYD+DRYEGRYG D D+NGYGRERE  +G RDDDR  RNGDSY  +GDRYGRD ++R
Sbjct: 181 YGDRYDDDRYEGRYGRDEDRNGYGRERE--WGSRDDDRYGRNGDSYGPEGDRYGRDSDER 238

Query: 239 YSRDVYRDDDYRGRSRSVDAYQDGS-SRNSD---------DGQLSSRG------------ 276
           Y RD Y+DDDYRGRSRS + YQ GS SR++D         +   SSRG            
Sbjct: 239 YGRDGYKDDDYRGRSRSNEDYQYGSRSRSADRDRDRAFDEESNHSSRGGARTDEHPQYGR 298

Query: 277 -LERKFSEQNIGAPPSYEEAVSESRSPVHSER 307
            LERKFSEQN+ APPSYEEAV+++ SPVH ER
Sbjct: 299 QLERKFSEQNLDAPPSYEEAVADAHSPVHDER 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069034|ref|XP_002302884.1| predicted protein [Populus trichocarpa] gi|222844610|gb|EEE82157.1| predicted protein [Populus trichocarpa]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/329 (74%), Positives = 266/329 (80%), Gaps = 33/329 (10%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKKAFDQT RDIKR VNKKVLKVP IEQKVLDATSNEPWGPHGTLLADIAQA+RNYHEYQ
Sbjct: 1   MKKAFDQTVRDIKREVNKKVLKVPSIEQKVLDATSNEPWGPHGTLLADIAQASRNYHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           MI+ V+WKR+NDTG+NWRHVYKALTVLEYLVAHGSERVID+IREHSYQISTLS+FQYIDS
Sbjct: 61  MIMAVLWKRLNDTGRNWRHVYKALTVLEYLVAHGSERVIDEIREHSYQISTLSNFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
           SG+DQG+NVRKKSQSLVALVNDKERIIEVRQKAAANRDKFR T+ GGMYRPGSYSS+GG 
Sbjct: 121 SGKDQGNNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFR-TSPGGMYRPGSYSSTGG- 178

Query: 181 GDRYDNDRYEGRYGNDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDRYS 240
              YD+D   GRY ++D+NGYG  +E  Y YRDDDR  + GDSY RD DRYG   E+RY 
Sbjct: 179 ---YDDD---GRYKDEDRNGYGYGKEREYNYRDDDRYGKYGDSYGRDADRYG---EERYG 229

Query: 241 RDVYRDDDYRGRSRSVDAY--------QDGSSRNSDDGQLSSRG--------------LE 278
           RD YRDDDY+GRSRS+D Y        +D      DDGQ SSRG              LE
Sbjct: 230 RDGYRDDDYQGRSRSIDGYGSRSRSSDRDRDRAFDDDGQSSSRGSGARADDRAQDGRRLE 289

Query: 279 RKFSEQNIGAPPSYEEAVSESRSPVHSER 307
           RK SEQNIG PPSYEE +SESRSP HSER
Sbjct: 290 RKPSEQNIGGPPSYEETISESRSPAHSER 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501475|ref|XP_003621026.1| Epsin-like protein [Medicago truncatula] gi|124360685|gb|ABN08674.1| Epsin, N-terminal; ENTH/VHS [Medicago truncatula] gi|355496041|gb|AES77244.1| Epsin-like protein [Medicago truncatula]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/324 (74%), Positives = 260/324 (80%), Gaps = 31/324 (9%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKK F QT RD+KR VNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRN HEYQ
Sbjct: 1   MKKVFGQTVRDLKREVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNPHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           MI+ V+WKRINDTGKNWRHVYKALTVLEYLVAHGSERVID+I+EHSYQISTLSDFQYIDS
Sbjct: 61  MIMSVVWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDEIKEHSYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
           SGRDQG+NVRKKSQ+LV LVNDKERI+EVRQKAA NR+KFRN T GGMYRPGS+SS G  
Sbjct: 121 SGRDQGNNVRKKSQNLVVLVNDKERIVEVRQKAAVNREKFRNNTPGGMYRPGSHSSIGSY 180

Query: 181 GDRYDNDRYEGRYGNDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDRYS 240
           GDRY+ DRY  R   +D+NGYG  RE   G RDDDR       Y+RDGDRYGRDYE+RY 
Sbjct: 181 GDRYEEDRYANR--EEDRNGYGYGREREMGSRDDDR-------YNRDGDRYGRDYEERYG 231

Query: 241 RDVYRDDDYRGRSRSVD-AYQDGSSRNS-------DDGQLSSRG-------------LER 279
           RD YRDDD RGRSRSVD  Y D  SRNS       DDGQ SSRG             L+R
Sbjct: 232 RDGYRDDD-RGRSRSVDYNYDDTRSRNSDRDRDFDDDGQHSSRGSNAKVEDQSLEARLQR 290

Query: 280 KFSEQNIGAPPSYEEAVSESRSPV 303
           K SEQN GAPPSYEEAV E++SPV
Sbjct: 291 KLSEQNSGAPPSYEEAVGEAQSPV 314

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689266|ref|NP_850386.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|30689274|ref|NP_850387.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|42571203|ref|NP_973675.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|75116590|sp|Q67YI9.1|EPN2_ARATH RecName: Full=Clathrin interactor EPSIN 2; AltName: Full=EPSIN-related 2 gi|51970954|dbj|BAD44169.1| unknown protein [Arabidopsis thaliana] gi|51971100|dbj|BAD44242.1| unknown protein [Arabidopsis thaliana] gi|62319865|dbj|BAD93910.1| hypothetical protein [Arabidopsis thaliana] gi|62319867|dbj|BAD93914.1| hypothetical protein [Arabidopsis thaliana] gi|110740368|dbj|BAF02079.1| hypothetical protein [Arabidopsis thaliana] gi|330255122|gb|AEC10216.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|330255123|gb|AEC10217.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|330255124|gb|AEC10218.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/330 (71%), Positives = 261/330 (79%), Gaps = 46/330 (13%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKK F QT RD+KR VNKKVLKVPG+EQKVLDATSNEPWGPHG+LLAD+AQA+RNYHEYQ
Sbjct: 1   MKKVFGQTVRDLKREVNKKVLKVPGVEQKVLDATSNEPWGPHGSLLADLAQASRNYHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           +I+ VIWKR++DTGKNWRHVYKALTVLEY+V HGSERVID+IRE +YQISTLSDFQYIDS
Sbjct: 61  LIMVVIWKRLSDTGKNWRHVYKALTVLEYMVGHGSERVIDEIRERAYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
            GRDQGSNVRKKSQSLVALVNDKERI EVRQKAAANRDK+R++  GGMY+P     SGG 
Sbjct: 121 GGRDQGSNVRKKSQSLVALVNDKERIAEVRQKAAANRDKYRSSAPGGMYKP-----SGGY 175

Query: 181 GDRYDNDRYEGRYGNDDQ--NGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDR 238
           GD+YD       YG+ D+  + YGRERE  YGYRDDDR+       SRDGDR+ RD EDR
Sbjct: 176 GDKYD-------YGSRDEERSSYGRERE--YGYRDDDRN-------SRDGDRHSRDSEDR 219

Query: 239 YSRDVYRDDDYRGRSRSVDAYQDGS-SRNS-----DDGQLSSR---------------GL 277
           Y RD  RDDDYRGRSRSVD Y  GS  R+S     DDG  SSR               GL
Sbjct: 220 YGRDGNRDDDYRGRSRSVDNY--GSRGRSSEREREDDGHSSSRGSGARADDNSQDGRGGL 277

Query: 278 ERKFSEQNIGAPPSYEEAVSESRSPVHSER 307
           +RKFSEQNIGAPPSYEEAVS+SRSPV+SER
Sbjct: 278 QRKFSEQNIGAPPSYEEAVSDSRSPVYSER 307

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468762|ref|XP_004152090.1| PREDICTED: clathrin interactor EPSIN 2-like [Cucumis sativus]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/332 (71%), Positives = 265/332 (79%), Gaps = 41/332 (12%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKKAFDQT RD+KR VNK VLK+P +EQKVLDATSNEPWGPHG+LLADIAQATRNYHEYQ
Sbjct: 1   MKKAFDQTVRDLKREVNKTVLKIPKVEQKVLDATSNEPWGPHGSLLADIAQATRNYHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           MI+G++WKRINDTGKNWRHVYK LTVLEYLV HGSERVIDDIREH+YQISTLSDFQYIDS
Sbjct: 61  MIMGILWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHAYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTA-GGMYRPGSYSSSGG 179
           +GRDQG+NVRKKSQ+LVALVNDKERIIEVRQKAAANRDKFR+ ++ G MYRPG    SGG
Sbjct: 121 NGRDQGNNVRKKSQNLVALVNDKERIIEVRQKAAANRDKFRSASSMGSMYRPG----SGG 176

Query: 180 NGDRYDNDRYEGRYGNDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDRY 239
             DRY+  RY GR G+ + + YGRER+YG+    DDRS RN DS       YGRDYE+RY
Sbjct: 177 YDDRYEG-RYGGRDGDRNVDSYGRERDYGF---RDDRSGRNEDS-------YGRDYEERY 225

Query: 240 SRDVYRDDDYRGRSRSVDAYQDGS-SRNS---------DDGQLSSRG------------- 276
           +RD Y+DDDYRGRSRS+D YQ GS SR+S         DDGQ+SSR              
Sbjct: 226 NRDGYKDDDYRGRSRSIDDYQYGSRSRSSDRDGERAYDDDGQVSSRNSGARPDEPSQVGR 285

Query: 277 -LERKFSEQNIGAPPSYEEAVSESRSPVHSER 307
            LERKFSEQNI APPSYEEAV+ES S V S+R
Sbjct: 286 QLERKFSEQNI-APPSYEEAVNESGSTVPSQR 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324901|ref|NP_001031535.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|51970932|dbj|BAD44158.1| unnamed protein product [Arabidopsis thaliana] gi|330255125|gb|AEC10219.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/328 (70%), Positives = 257/328 (78%), Gaps = 42/328 (12%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKK F QT RD+KR VNKKVLKVPG+EQKVLDATSNEPWGPHG+LLAD+AQA+RNYHEYQ
Sbjct: 1   MKKVFGQTVRDLKREVNKKVLKVPGVEQKVLDATSNEPWGPHGSLLADLAQASRNYHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           +I+ VIWKR++DTGKNWRHVYKALTVLEY+V HGSERVID+IRE +YQISTLSDFQYIDS
Sbjct: 61  LIMVVIWKRLSDTGKNWRHVYKALTVLEYMVGHGSERVIDEIRERAYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
            GRDQGSNVRKKSQSLVALVNDKERI EVRQKAAANRDK+R++  GGMY+P     SGG 
Sbjct: 121 GGRDQGSNVRKKSQSLVALVNDKERIAEVRQKAAANRDKYRSSAPGGMYKP-----SGGY 175

Query: 181 GDRYDNDRYEGRYGNDDQ--NGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDR 238
           GD+YD       YG+ D+  + YGRERE  YGYRDDDR+       SRDGDR+ RD EDR
Sbjct: 176 GDKYD-------YGSRDEERSSYGRERE--YGYRDDDRN-------SRDGDRHSRDSEDR 219

Query: 239 YSRDVYRDDDYRGRSRSVDAY----QDGSSRNSDDGQLSSR---------------GLER 279
           Y RD  RDDDYRGRSRSVD Y    +       DDG  SSR               GL+R
Sbjct: 220 YGRDGNRDDDYRGRSRSVDNYGSRGRSSEREREDDGHSSSRGSGARADDNSQDGRGGLQR 279

Query: 280 KFSEQNIGAPPSYEEAVSESRSPVHSER 307
           KFSEQNIGAPPSYEEAVS+SRSPV+SER
Sbjct: 280 KFSEQNIGAPPSYEEAVSDSRSPVYSER 307

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2040981	895	AT2G43160 [Arabidopsis thalian	0.578	0.213	0.783	2.3e-95
TAIR|locus:2081167	1024	AT3G59290 [Arabidopsis thalian	0.563	0.181	0.757	3.4e-92
TAIR|locus:2181920	560	AT5G11710 [Arabidopsis thalian	0.593	0.35	0.547	1.4e-57
UNIPROTKB|E9PBC1	484	EPN2 "Epsin-2" [Homo sapiens (	0.554	0.378	0.452	2.8e-40
UNIPROTKB|O95208	641	EPN2 "Epsin-2" [Homo sapiens (	0.554	0.285	0.452	2.5e-39
UNIPROTKB|F1MYK3	639	EPN2 "Uncharacterized protein"	0.554	0.286	0.447	8.8e-39
DICTYBASE|DDB_G0291512	686	epnA "epsin" [Dictyostelium di	0.551	0.265	0.449	3.7e-38
ZFIN|ZDB-GENE-040426-2680	636	epn1 "epsin 1" [Danio rerio (t	0.472	0.245	0.487	1.4e-37
UNIPROTKB|E7EMC3	499	EPN2 "Uncharacterized protein"	0.554	0.366	0.452	3.9e-37
UNIPROTKB|F6PQP6	410	EPN2 "Epsin-2" [Homo sapiens (	0.554	0.446	0.452	3.9e-37

TAIR|locus:2040981 AT2G43160 [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
 Identities = 156/199 (78%), Positives = 174/199 (87%)

Query:     1 MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
             MKK F QT RD+KR VNKKVLKVPG+EQKVLDATSNEPWGPHG+LLAD+AQA+RNYHEYQ
Sbjct:     1 MKKVFGQTVRDLKREVNKKVLKVPGVEQKVLDATSNEPWGPHGSLLADLAQASRNYHEYQ 60

Query:    61 MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
             +I+ VIWKR++DTGKNWRHVYKALTVLEY+V HGSERVID+IRE +YQISTLSDFQYIDS
Sbjct:    61 LIMVVIWKRLSDTGKNWRHVYKALTVLEYMVGHGSERVIDEIRERAYQISTLSDFQYIDS 120

Query:   121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
              GRDQGSNVRKKSQSLVALVNDKERI EVRQKAAANRDK+R++  GGMY+P     SGG 
Sbjct:   121 GGRDQGSNVRKKSQSLVALVNDKERIAEVRQKAAANRDKYRSSAPGGMYKP-----SGGY 175

Query:   181 GDRYD-NDRYEGR--YGND 196
             GD+YD   R E R  YG +
Sbjct:   176 GDKYDYGSRDEERSSYGRE 194

GO:0005634 "nucleus" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030276 "clathrin binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2081167 AT3G59290 [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
 Identities = 150/198 (75%), Positives = 175/198 (88%)

Query:     1 MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
             MKKAF QT RD+KRGVNKKVLKVPGIEQKVLDATSNE WGPHG+LLADIA A+RNYHEYQ
Sbjct:     1 MKKAFGQTVRDLKRGVNKKVLKVPGIEQKVLDATSNESWGPHGSLLADIAHASRNYHEYQ 60

Query:    61 MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
             + +GV+WKR++D+GKNWRHVYKALTVLEY+V HGSERVI++++EH+YQI+TLS FQYIDS
Sbjct:    61 ITMGVLWKRLSDSGKNWRHVYKALTVLEYMVGHGSERVIEEVKEHAYQITTLSGFQYIDS 120

Query:   121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
             SG+DQGSNVRKK+QSLVALVNDKERI EVR+KAAANRDK+ N+    M+RP     SGG 
Sbjct:   121 SGKDQGSNVRKKAQSLVALVNDKERITEVREKAAANRDKYHNS----MHRP-----SGGY 171

Query:   181 GDRYDNDRYEGRYGNDDQ 198
             GD+YD   YEGRYG+ D+
Sbjct:   172 GDKYD---YEGRYGDRDE 186

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2181920 AT5G11710 [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 109/199 (54%), Positives = 157/199 (78%)

Query:     3 KAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMI 62
             K FDQT R+IKR VN KVLKVP +EQKVLDAT NEPWGPHGT LA+IAQAT+ + E QM+
Sbjct:     5 KVFDQTVREIKREVNLKVLKVPEMEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMV 64

Query:    63 IGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSG 122
             + V+W R+++TGK+WR+VYKAL V++YL+++GSER +D+I EH+YQIS+L+ F+Y++ +G
Sbjct:    65 MSVLWTRLSETGKDWRYVYKALAVIDYLISNGSERAVDEIIEHTYQISSLTSFEYVEPNG 124

Query:   123 RDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGM-YRPGSYSSSGGNG 181
             +D G NVRKK++++VAL+N+KE+I E+R KA ANR+K+   ++ G+ Y+ GS +S GG+ 
Sbjct:   125 KDVGINVRKKAENIVALLNNKEKISEIRDKAVANRNKYVGLSSTGITYKSGSSASFGGSF 184

Query:   182 DRYDN--DRYEGRYGNDDQ 198
                 +  D Y+ R   +D+
Sbjct:   185 QSGSSNFDSYKDRDSREDK 203

GO:0005737 "cytoplasm" evidence=ISM

GO:0009579 "thylakoid" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0030276 "clathrin binding" evidence=IDA

GO:0005543 "phospholipid binding" evidence=TAS

GO:0002020 "protease binding" evidence=IPI

GO:0006886 "intracellular protein transport" evidence=RCA

UNIPROTKB|E9PBC1 EPN2 "Epsin-2" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
 Identities = 86/190 (45%), Positives = 114/190 (60%)

Query:     8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIW 67
             T   I+R +   V      E KV +ATSN+PWGP  +L+ +IA  T N   +  I+ ++W
Sbjct:     2 TTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVW 61

Query:    68 KRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGS 127
             KR+ND GKNWRHVYKALT+L+YL+  GSERV    RE+ + I TL DFQYID  G+DQG 
Sbjct:    62 KRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGI 121

Query:   128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDN- 186
             NVR+KS+ LVAL+ D+ER+   R +A   +++     A GM   GS   + G G    N 
Sbjct:   122 NVREKSKQLVALLKDEERLKAERAQALKTKERMAQV-ATGM---GSNQITFGRGSSQPNL 177

Query:   187 --DRYEGRYG 194
                  E  YG
Sbjct:   178 STSHSEQEYG 187

GO:0006897 "endocytosis" evidence=IEA

GO:0030128 "clathrin coat of endocytic vesicle" evidence=IEA

UNIPROTKB|O95208 EPN2 "Epsin-2" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 86/190 (45%), Positives = 114/190 (60%)

Query:     8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIW 67
             T   I+R +   V      E KV +ATSN+PWGP  +L+ +IA  T N   +  I+ ++W
Sbjct:     2 TTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVW 61

Query:    68 KRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGS 127
             KR+ND GKNWRHVYKALT+L+YL+  GSERV    RE+ + I TL DFQYID  G+DQG 
Sbjct:    62 KRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGI 121

Query:   128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDN- 186
             NVR+KS+ LVAL+ D+ER+   R +A   +++     A GM   GS   + G G    N 
Sbjct:   122 NVREKSKQLVALLKDEERLKAERAQALKTKERMAQV-ATGM---GSNQITFGRGSSQPNL 177

Query:   187 --DRYEGRYG 194
                  E  YG
Sbjct:   178 STSHSEQEYG 187

GO:0030128 "clathrin coat of endocytic vesicle" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0048568 "embryonic organ development" evidence=IEA

UNIPROTKB|F1MYK3 EPN2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 395 (144.1 bits), Expect = 8.8e-39, Sum P(2) = 8.8e-39
 Identities = 85/190 (44%), Positives = 115/190 (60%)

Query:     8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIW 67
             T   I+R +   V      E KV +ATSN+PWGP  +L+ +IA  T N   +  I+ ++W
Sbjct:     2 TTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVW 61

Query:    68 KRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGS 127
             KR+ND GKNWRHVYKALT+L+YL+  GSERV    RE+ + I TL DFQY+D  G+DQG 
Sbjct:    62 KRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYVDRDGKDQGV 121

Query:   128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDN- 186
             NVR+K++ LVAL+ D+ER+   R +A   +++     A GM   GS   + G G    N 
Sbjct:   122 NVREKAKQLVALLKDEERLKAERAQALKTKERMAQV-ATGM---GSNQITFGRGSSQPNL 177

Query:   187 -DRY-EGRYG 194
                Y E  YG
Sbjct:   178 STSYSEQEYG 187

GO:0048568 "embryonic organ development" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0030128 "clathrin coat of endocytic vesicle" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

DICTYBASE|DDB_G0291512 epnA "epsin" [Dictyostelium discoideum (taxid:44689)]

 Score = 414 (150.8 bits), Expect = 3.7e-38, P = 3.7e-38
 Identities = 84/187 (44%), Positives = 125/187 (66%)

Query:    12 IKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIN 71
             IK+G +  VL  P IE+KV DATSN+ WGP GT + +I++A+ NY  + +I+GVIWKRIN
Sbjct:     9 IKKGKDA-VLNTPEIERKVRDATSNDKWGPSGTQMQEISRASYNYECFPIIMGVIWKRIN 67

Query:    72 DTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRK 131
             D GK WRHVYK+L +++YLV +GS +VI D R H+ +I TL +FQYI+   +D G +VR+
Sbjct:    68 DPGKFWRHVYKSLLLIDYLVRNGSPQVIRDCRHHTMEIKTLVEFQYIEEE-KDVGLSVRE 126

Query:   132 KSQSLVALVNDKERIIEVRQKAAANRDKF---RNTTAGGMYRPGSYSSSGGNGDRYDNDR 188
             +++ ++ L+ D +RI E R KA  N++K+    N +    Y  GSY   G + D Y +++
Sbjct:   127 RAKQVIDLLQDDQRIKEERDKAKTNQNKYVGIGNDSRDFGYGGGSYGGGGYDSDSYGSNQ 186

Query:   189 YEGRYGN 195
              +   GN
Sbjct:   187 RDSYGGN 193

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0000331 "contractile vacuole" evidence=IDA

GO:0035304 "regulation of protein dephosphorylation" evidence=IDA

GO:0030122 "AP-2 adaptor complex" evidence=IDA

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0030276 "clathrin binding" evidence=IDA

GO:0005905 "coated pit" evidence=IEA;IDA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

GO:0000910 "cytokinesis" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040426-2680 epn1 "epsin 1" [Danio rerio (taxid:7955)]

 Score = 407 (148.3 bits), Expect = 1.4e-37, P = 1.4e-37
 Identities = 76/156 (48%), Positives = 106/156 (67%)

Query:    12 IKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIN 71
             ++R V   V      E KV +ATSN+PWGP  +L+++IA  T N   +  I+ ++WKR+N
Sbjct:     6 LRRQVKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMVWKRLN 65

Query:    72 DTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRK 131
             D GKNWRHVYKA+T++EYL+  GSERV    RE+ Y + TL DFQYID  G+DQG NVR+
Sbjct:    66 DHGKNWRHVYKAMTLMEYLIKTGSERVAQQCRENIYAVQTLKDFQYIDRDGKDQGVNVRE 125

Query:   132 KSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGG 167
             K++ LV L+ D+ER+ E R  A   ++K   T++GG
Sbjct:   126 KAKQLVTLLKDEERLREERIHALKTKEKMAQTSSGG 161

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E7EMC3 EPN2 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 86/190 (45%), Positives = 114/190 (60%)

Query:     8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIW 67
             T   I+R +   V      E KV +ATSN+PWGP  +L+ +IA  T N   +  I+ ++W
Sbjct:     2 TTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVW 61

Query:    68 KRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGS 127
             KR+ND GKNWRHVYKALT+L+YL+  GSERV    RE+ + I TL DFQYID  G+DQG 
Sbjct:    62 KRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGI 121

Query:   128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDN- 186
             NVR+KS+ LVAL+ D+ER+   R +A   +++     A GM   GS   + G G    N 
Sbjct:   122 NVREKSKQLVALLKDEERLKAERAQALKTKERMAQV-ATGM---GSNQITFGRGSSQPNL 177

Query:   187 --DRYEGRYG 194
                  E  YG
Sbjct:   178 STSHSEQEYG 187

GO:0006897 "endocytosis" evidence=IEA

GO:0030128 "clathrin coat of endocytic vesicle" evidence=IEA

UNIPROTKB|F6PQP6 EPN2 "Epsin-2" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 86/190 (45%), Positives = 114/190 (60%)

Query:     8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIW 67
             T   I+R +   V      E KV +ATSN+PWGP  +L+ +IA  T N   +  I+ ++W
Sbjct:     2 TTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVW 61

Query:    68 KRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGS 127
             KR+ND GKNWRHVYKALT+L+YL+  GSERV    RE+ + I TL DFQYID  G+DQG 
Sbjct:    62 KRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGI 121

Query:   128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDN- 186
             NVR+KS+ LVAL+ D+ER+   R +A   +++     A GM   GS   + G G    N 
Sbjct:   122 NVREKSKQLVALLKDEERLKAERAQALKTKERMAQV-ATGM---GSNQITFGRGSSQPNL 177

Query:   187 --DRYEGRYG 194
                  E  YG
Sbjct:   178 STSHSEQEYG 187

GO:0006897 "endocytosis" evidence=IEA

GO:0030128 "clathrin coat of endocytic vesicle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q67YI9	EPN2_ARATH	No assigned EC number	0.7121	0.8606	0.3173	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
cd03571	123	cd03571, ENTH_epsin, ENTH domain, Epsin family; Th	5e-68
pfam01417	124	pfam01417, ENTH, ENTH domain	2e-63
smart00273	127	smart00273, ENTH, Epsin N-terminal homology (ENTH)	4e-45
cd00197	115	cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain	7e-19
cd03564	117	cd03564, ANTH_AP180_CALM, ANTH domain family; comp	0.003

>gnl|CDD|239627 cd03571, ENTH_epsin, ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis

 Score =  208 bits (532), Expect = 5e-68
 Identities = 76/121 (62%), Positives = 100/121 (82%)

Query: 26  IEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALT 85
            E KV +ATSN+PWGP GTL+A+IA+AT NY E+Q I+ ++WKR+ND GKNWRHVYKALT
Sbjct: 2   AELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALT 61

Query: 86  VLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKER 145
           +LEYL+ +GSERV+DD RE+ Y I TL DFQYID +G+DQG NVR+K++ ++ L+ D ER
Sbjct: 62  LLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREKAKEILELLEDDER 121

Query: 146 I 146
           +
Sbjct: 122 L 122

A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding. Length = 123

>gnl|CDD|216488 pfam01417, ENTH, ENTH domain

 Score =  196 bits (501), Expect = 2e-63
 Identities = 74/121 (61%), Positives = 98/121 (80%)

Query: 26  IEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALT 85
            E KV +AT+N+PWGP GTL+A+IA+ T +Y E+  I+ V+WKR+ND+GKNWRHVYKALT
Sbjct: 4   TELKVREATNNDPWGPSGTLMAEIARLTYDYVEFFEIMEVLWKRLNDSGKNWRHVYKALT 63

Query: 86  VLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKER 145
           +LEYL+ +GSERV+DD+REH Y I TL DF YID  G+DQG NVRKK++ ++ L+ D ER
Sbjct: 64  LLEYLLKNGSERVVDDLREHIYIIRTLRDFHYIDEDGKDQGINVRKKAKQILNLLEDDER 123

Query: 146 I 146
           +
Sbjct: 124 L 124

The ENTH (Epsin N-terminal homology) domain is found in proteins involved in endocytosis and cytoskeletal machinery. The function of the ENTH domain is unknown. Length = 124

>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain

 Score =  149 bits (379), Expect = 4e-45
 Identities = 58/128 (45%), Positives = 81/128 (63%), Gaps = 2/128 (1%)

Query: 24  PGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYK 82
             +E KV  AT+N+ WGP G  L +I Q T N    +  I+ V+W+R+NDT  NWR VYK
Sbjct: 1   SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTK-NWRVVYK 59

Query: 83  ALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVND 142
           AL +L YL+ +GS RVI +   +  +I  LSDFQ IDS G+DQG+N+R  ++ L+  + D
Sbjct: 60  ALILLHYLLRNGSPRVILEALRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLED 119

Query: 143 KERIIEVR 150
             R+ E R
Sbjct: 120 DRRLKEER 127

Length = 127

>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

 Score = 80.5 bits (199), Expect = 7e-19
 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 4/114 (3%)

Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHE-YQMIIGVIWKRINDTGKNWRHVYKALT 85
           E+ V  ATSNE  GP   L+ +I       +   +  +  I KRIN+  KN   V KALT
Sbjct: 2   EKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINN--KNPHVVLKALT 59

Query: 86  VLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVAL 139
           +LEY V +  ER   ++  + + +  L  F      G D  +NVR+K+  LV L
Sbjct: 60  LLEYCVKNCGERFHQEVASNDFAVELLK-FDKSKLLGDDVSTNVREKAIELVQL 112

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH domain-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding. Length = 115

>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 26  IEQKVLDATSNEPWGPHGTLLADIAQATRNYHEY-QMIIGVIWKRINDTGKNWRHVYKAL 84
           +E+ V  ATS++   P    +  I   T +           + +R+ D   NW  V KAL
Sbjct: 1   LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLDR--NWVVVLKAL 58

Query: 85  TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSS-GRDQGSNVRK 131
            +L  L+  G    + ++         LS+F    SS G    + +R 
Sbjct: 59  ILLHRLLREGHPSFLQELL-SRRGWLNLSNFLDKSSSLGYGYSAFIRA 105

A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machinery for clathrin-mediated membrane budding. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG2056	336	consensus Equilibrative nucleoside transporter pro	100.0
cd03571	123	ENTH_epsin ENTH domain, Epsin family; The epsin (E	100.0
KOG2057	499	consensus Predicted equilibrative nucleoside trans	100.0
PF01417	125	ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E	100.0
smart00273	127	ENTH Epsin N-terminal homology (ENTH) domain.	100.0
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	99.93
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	99.89
cd03564	117	ANTH_AP180_CALM ANTH domain family; composed of ad	99.78
PF07651	280	ANTH: ANTH domain; InterPro: IPR011417 AP180 is an	98.7
KOG0251	491	consensus Clathrin assembly protein AP180 and rela	98.2
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	98.18
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	97.78
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	97.75
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	97.68
cd03561	133	VHS VHS domain family; The VHS domain is present i	97.65
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	97.6
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	97.45
KOG1087	470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	96.66
KOG2199	462	consensus Signal transducing adaptor protein STAM/	94.46
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	83.71

>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]

Probab=100.00  E-value=2.4e-58  Score=444.84  Aligned_cols=211  Identities=48%  Similarity=0.744  Sum_probs=184.6

Q ss_pred             hhhHHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHH
Q 020164            5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKAL   84 (330)
Q Consensus         5 ~~q~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL   84 (330)
                      +.+++++|+|.++|+|++|+++|+||++||+||||||++++|+|||++||++.+|.+||.||||||+++||+||||||||
T Consensus         1 ~~~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaL   80 (336)
T KOG2056|consen    1 GTMSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKAL   80 (336)
T ss_pred             CcccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhccc
Q 020164           85 TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTT  164 (330)
Q Consensus        85 ~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky~g~~  164 (330)
                      +||||||+||||+||+|+|+|+++|++|+.|+|+|++|+|+|++||+||++|+.||+|+++|++||++|+++|.||.+.+
T Consensus        81 tlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~erLkeeR~~a~~~r~k~~~~~  160 (336)
T KOG2056|consen   81 TLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDDERLKEERKKARKTRTKFAGFG  160 (336)
T ss_pred             HHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCccC-CCCCCCCCCCCCCCCcccccCCCC-C-CCCCCCCCccCCCCCCCCCCCC
Q 020164          165 AGGMYR-PGSYSSSGGNGDRYDNDRYEGRYG-N-DDQNGYGREREYGYGYRDDDRS  217 (330)
Q Consensus       165 ~g~~~~-~gs~ss~ggy~~~~d~~~~~~~~g-~-~~~~~~g~~~~~~~~~~~~~~~  217 (330)
                      .++.+. +++.+++++|+++.+.+-...... . .++..++.+.++.  +......
T Consensus       161 ~~~~~~~~~~~~s~~s~~d~~~~~~~~~~s~e~~~~r~~~~~~~e~~--~~~~~~~  214 (336)
T KOG2056|consen  161 PGSISNKSNSERSSASYQDDDDSAGPPRTSEEDDQGRPSTSNEEEYE--LQSALSL  214 (336)
T ss_pred             CCccccccccccCccccccchhhccCCccccchhhcccccccccchh--hhhhhhh
Confidence            766554 556678888988765321111111 1 3455566555555  5455444

>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis

Probab=100.00  E-value=1.4e-49  Score=337.55  Aligned_cols=123  Identities=62%  Similarity=1.061  Sum_probs=121.1

Q ss_pred             hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020164           25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE  104 (330)
Q Consensus        25 ~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~  104 (330)
                      |+|++|++|||||||||++++|++||++||++++|.+||++|||||.+++++||||||||+||||||+|||++||+|+|+
T Consensus         1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~   80 (123)
T cd03571           1 EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE   80 (123)
T ss_pred             CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHH
Q 020164          105 HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERII  147 (330)
Q Consensus       105 h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~  147 (330)
                      |+++|++|++|+|+|++|+|+|.+||+||++|++||+|+++|+
T Consensus        81 ~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~D~~~L~  123 (123)
T cd03571          81 NLYIIRTLKDFQYIDENGKDQGINVREKAKEILELLEDDERLR  123 (123)
T ss_pred             hHHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHhCCHhhcC
Confidence            9999999999999999999999999999999999999999984

A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ

>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.2e-46  Score=363.05  Aligned_cols=180  Identities=32%  Similarity=0.681  Sum_probs=167.9

Q ss_pred             hhHHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC--hhhHHHHHHHHHHHhcc-CCCchhHHHH
Q 020164            6 DQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRN--YHEYQMIIGVIWKRIND-TGKNWRHVYK   82 (330)
Q Consensus         6 ~q~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn--~~~y~~Im~vLwKRL~~-~gk~WR~VyK   82 (330)
                      ...||+|.++++++||||+++|.+||||||.|||||++.+|.|||.+||.  +++|.++|.+||.||.+ ..+.||+|||
T Consensus         4 m~kVRel~dkandaiMNY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYK   83 (499)
T KOG2057|consen    4 MEKVRELTDKANDAIMNYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYK   83 (499)
T ss_pred             hHHHHHHHHHHhHHHhcchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999  89999999999999865 5679999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHh-hhhhh
Q 020164           83 ALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAAN-RDKFR  161 (330)
Q Consensus        83 aL~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~kn-R~Ky~  161 (330)
                      +|+||.|||+|||||||.++|+|+|.|+.|.+|+|+|+.|||||+|||+|.|+|+++.+|+++|++||+||+++ ++||+
T Consensus        84 SLiLLaYLikNGSER~VqeAREh~YdLR~LEnYhfiDEhGKDQGINIR~kVKeilEfanDDd~Lq~ERkKAkkddKdKY~  163 (499)
T KOG2057|consen   84 SLILLAYLIKNGSERFVQEAREHAYDLRRLENYHFIDEHGKDQGINIRHKVKEILEFANDDDLLQAERKKAKKDDKDKYR  163 (499)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhhhCccccccHHHHHHHHHHHhccHHHHHHHHHhhccccchhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             cccCCCccCCCCC-----CCCCCCCCCCC
Q 020164          162 NTTAGGMYRPGSY-----SSSGGNGDRYD  185 (330)
Q Consensus       162 g~~~g~~~~~gs~-----ss~ggy~~~~d  185 (330)
                      |+.+-.|.+++++     .+-.+|+..||
T Consensus       164 G~~qd~mggf~~SekydpepkS~wDeeWD  192 (499)
T KOG2057|consen  164 GFDQDDMGGFGSSEKYDPEPKSGWDEEWD  192 (499)
T ss_pred             ccchhhccccccccccCCCcccccccccc
Confidence            9988776665543     34567888776

>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins

Probab=100.00  E-value=2e-43  Score=295.80  Aligned_cols=124  Identities=56%  Similarity=0.984  Sum_probs=114.5

Q ss_pred             CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHh-ccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020164           23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRI-NDTGKNWRHVYKALTVLEYLVAHGSERVIDD  101 (330)
Q Consensus        23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL-~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e  101 (330)
                      ||++|++|++|||||||||++++|+|||++||++.+|..||++||+|| ..++++||++||||+||+|||+|||++||.|
T Consensus         1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~   80 (125)
T PF01417_consen    1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE   80 (125)
T ss_dssp             --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence            799999999999999999999999999999999999999999999999 8899999999999999999999999999999


Q ss_pred             HHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHH
Q 020164          102 IREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI  146 (330)
Q Consensus       102 ~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L  146 (330)
                      +|+|+..|+.|.+|+|+|++|+|+|.+||++|++|++||+|+++|
T Consensus        81 ~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~~L  125 (125)
T PF01417_consen   81 LRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDERL  125 (125)
T ss_dssp             HHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcccC
Confidence            999999999999999999999999999999999999999999987

The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....

>smart00273 ENTH Epsin N-terminal homology (ENTH) domain

Probab=100.00  E-value=6e-35  Score=244.83  Aligned_cols=126  Identities=46%  Similarity=0.770  Sum_probs=122.7

Q ss_pred             chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164           24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI  102 (330)
Q Consensus        24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~  102 (330)
                      +++|++|++|||+|+|||++++|.+|+++||++ ..|..||.+||+||.+++ +||+|||||+||+|||+||+++|+.++
T Consensus         1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~-~w~~v~KsL~llh~ll~~G~~~~~~~~   79 (127)
T smart00273        1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTK-NWRVVYKALILLHYLLRNGSPRVILEA   79 (127)
T ss_pred             CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            578999999999999999999999999999999 899999999999999877 899999999999999999999999999


Q ss_pred             HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHH
Q 020164          103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVR  150 (330)
Q Consensus       103 r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER  150 (330)
                      +.|...|..|.+|+++|++|.|+|.+||++|+.|.+||.|.+.|++||
T Consensus        80 ~~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~er  127 (127)
T smart00273       80 LRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLEDDRRLKEER  127 (127)
T ss_pred             HHhhHHHhhHhhCeecCCCCeeCcHHHHHHHHHHHHHHcCHHHHhccC
Confidence            999999999999999999999999999999999999999999999886

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=99.93  E-value=9.9e-26  Score=191.94  Aligned_cols=113  Identities=24%  Similarity=0.362  Sum_probs=107.2

Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHH-HHHHHHHHHHHHcCCHHHHHHHHhh
Q 020164           28 QKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHV-YKALTVLEYLVAHGSERVIDDIREH  105 (330)
Q Consensus        28 ~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~V-yKaL~LLEYLLkNGSErvV~e~r~h  105 (330)
                      .+|+.||+|++|||++.+|.|||++||+. ..|.+||++|.|||++++   +|| +|||.||.||+.+|++.|+.|++.|
T Consensus         4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~---~hVK~K~Lrilk~l~~~G~~~f~~~~~~~   80 (122)
T cd03572           4 SLLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSS---PHVKLKVLKIIKHLCEKGNSDFKRELQRN   80 (122)
T ss_pred             HHHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            47899999999999999999999999995 889999999999999866   999 9999999999999999999999999


Q ss_pred             hhhhhcccccee-eCC-CCCccchhHHHHHHHHHHhhcCH
Q 020164          106 SYQISTLSDFQY-IDS-SGRDQGSNVRKKSQSLVALVNDK  143 (330)
Q Consensus       106 ~~~I~~L~~Fqy-~D~-~GkD~G~nVR~KAk~Il~LL~D~  143 (330)
                      .++|++|.+|++ +|+ .|.+.+..||.+|+++++||-..
T Consensus        81 ~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~  120 (122)
T cd03572          81 SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSY  120 (122)
T ss_pred             HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhcc
Confidence            999999999999 687 89999999999999999998654

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=99.89  E-value=6.9e-23  Score=168.48  Aligned_cols=113  Identities=35%  Similarity=0.440  Sum_probs=103.9

Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 020164           27 EQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH  105 (330)
Q Consensus        27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h  105 (330)
                      |++|.+||++++|||+.++|.+|++++++. ..+..||+.|||||..+  +|++++|||+|||||++||+++|..+++.+
T Consensus         2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~   79 (115)
T cd00197           2 EKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGERFHQEVASN   79 (115)
T ss_pred             hHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Confidence            789999999999999999999999999887 56799999999999875  999999999999999999999999999999


Q ss_pred             hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcC
Q 020164          106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVND  142 (330)
Q Consensus       106 ~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D  142 (330)
                      .+.++.+ .|.+.+..|.+++.+||+|+++|+++..|
T Consensus        80 ~~~~~l~-~~~~~~~~~~~~~~~Vr~k~~~l~~~w~~  115 (115)
T cd00197          80 DFAVELL-KFDKSKLLGDDVSTNVREKAIELVQLWAS  115 (115)
T ss_pred             HHHHHHH-HhhccccccCCCChHHHHHHHHHHHHHhC
Confidence            9877655 56777778999999999999999998754

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins

Probab=99.78  E-value=8.9e-19  Score=145.79  Aligned_cols=112  Identities=23%  Similarity=0.307  Sum_probs=102.8

Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020164           26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE  104 (330)
Q Consensus        26 ~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~  104 (330)
                      .|+.|..||++++|+|..+.|.+|...|++ ...+..||..|++||.+  ++|++++|||+||.+||++|++.|+.+++.
T Consensus         1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~--~~w~v~~K~LillH~llr~G~~~~~~~~~~   78 (117)
T cd03564           1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD--RNWVVVLKALILLHRLLREGHPSFLQELLS   78 (117)
T ss_pred             CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            378899999999999999999999999999 78999999999999988  799999999999999999999999999999


Q ss_pred             hhhhhhccccceeeCC-CCCccchhHHHHHHHHHHhh
Q 020164          105 HSYQISTLSDFQYIDS-SGRDQGSNVRKKSQSLVALV  140 (330)
Q Consensus       105 h~~~I~~L~~Fqy~D~-~GkD~G~nVR~KAk~Il~LL  140 (330)
                      |...| .|..|.+.++ .+.|+|..||..|+-|.+-|
T Consensus        79 ~~~~l-~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl  114 (117)
T cd03564          79 RRGWL-NLSNFLDKSSSLGYGYSAFIRAYARYLDERL  114 (117)
T ss_pred             ccCee-eccccccCCCCCchhhhHHHHHHHHHHHHHH
Confidence            96666 6778888865 68899999999999887655

A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits

Probab=98.70  E-value=5.7e-08  Score=90.53  Aligned_cols=112  Identities=23%  Similarity=0.335  Sum_probs=81.6

Q ss_pred             chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020164           24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR  103 (330)
Q Consensus        24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r  103 (330)
                      +..|+-|..||+.+.-.|..+.+..|..+|++......++..|.+||... ++|..++|||+||.-||+-|++.|+.++.
T Consensus         2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~~~~~~~~~~~l~~Rl~~~-~~w~V~~K~Lil~H~llr~G~~~~~~~~~   80 (280)
T PF07651_consen    2 SDLEKAVIKATSHDEAPPKEKHVREILSATSSPESVAFLFWALSRRLPLT-RNWIVALKALILLHRLLRDGHPSFLQELL   80 (280)
T ss_dssp             -HHHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS--SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred             hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            46789999999999999999999999999999667889999999999763 57999999999999999999999999998


Q ss_pred             hhhhhhhccccceeeC---CCCCccchhHHHHHHHH
Q 020164          104 EHSYQISTLSDFQYID---SSGRDQGSNVRKKSQSL  136 (330)
Q Consensus       104 ~h~~~I~~L~~Fqy~D---~~GkD~G~nVR~KAk~I  136 (330)
                      .+...+..+..+.-.|   +.+.+++.-||.=|+-|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL  116 (280)
T PF07651_consen   81 RYNRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYL  116 (280)
T ss_dssp             HTT-----TT---T---SSCHHHHHHHHHHHHHHHH
T ss_pred             HcccchhhhccccccccCCccccchhHHHHHHHHHH
Confidence            7766566665553312   23557788888777544

The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.

>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=7.4e-06  Score=84.32  Aligned_cols=109  Identities=26%  Similarity=0.377  Sum_probs=90.0

Q ss_pred             CCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 020164           22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID  100 (330)
Q Consensus        22 n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~  100 (330)
                      ..+.+++.|..||+.+..+|..+.+..|-.+|-+. ....-++..|-.||+.+ ++|..+||||+||..||++|.+.|..
T Consensus        20 ~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~T-rnW~VAlKsLIliH~ll~~G~~~f~~   98 (491)
T KOG0251|consen   20 AGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKT-RNWTVALKALILIHRLLKEGDPSFEQ   98 (491)
T ss_pred             hhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCC-cceeehHHHHHHHHHHHhcCcHHHHH
Confidence            46899999999999999999999999999999665 67889999999999775 58999999999999999999999999


Q ss_pred             HHHhhhhhhhccccceeeCC---CCCccchhHHHHHH
Q 020164          101 DIREHSYQISTLSDFQYIDS---SGRDQGSNVRKKSQ  134 (330)
Q Consensus       101 e~r~h~~~I~~L~~Fqy~D~---~GkD~G~nVR~KAk  134 (330)
                      ++...-..| .|.+|  .|.   .+-|+..-||.=|+
T Consensus        99 ~l~~~~~~l-~lS~F--~d~s~~~~~d~safVR~Ya~  132 (491)
T KOG0251|consen   99 ELLSRNLIL-NLSDF--RDKSSSLTWDMSAFVRTYAL  132 (491)
T ss_pred             HHHhccccc-chhhh--hcccccccchhhHHHHHHHH
Confidence            887655222 33444  332   35688888884443

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=98.18  E-value=1.2e-05  Score=68.96  Aligned_cols=109  Identities=19%  Similarity=0.185  Sum_probs=80.1

Q ss_pred             CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020164           23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD  101 (330)
Q Consensus        23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e  101 (330)
                      .++++.+|..||+...-.|.-...-+|++.-.. ...-.+++..|.|||..  .+-..++-||+|||.|++||.+.|-.+
T Consensus         3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~--~~~~vq~~aL~lld~lvkNcg~~f~~e   80 (140)
T PF00790_consen    3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKH--GNPNVQLLALTLLDALVKNCGPRFHRE   80 (140)
T ss_dssp             CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            478999999999988878877888888888544 55678999999999988  588999999999999999999998888


Q ss_pred             HHhh--hhhhhccccceeeCCCCCccchh--HHHHHHHHHHhh
Q 020164          102 IREH--SYQISTLSDFQYIDSSGRDQGSN--VRKKSQSLVALV  140 (330)
Q Consensus       102 ~r~h--~~~I~~L~~Fqy~D~~GkD~G~n--VR~KAk~Il~LL  140 (330)
                      +-..  +..|..|-.-.       ..+..  ||+|+..++.-.
T Consensus        81 v~~~~fl~~l~~l~~~~-------~~~~~~~Vk~k~l~ll~~W  116 (140)
T PF00790_consen   81 VASKEFLDELVKLIKSK-------KTDPETPVKEKILELLQEW  116 (140)
T ss_dssp             HTSHHHHHHHHHHHHHT-------TTHHHSHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHccC-------CCCchhHHHHHHHHHHHHH
Confidence            7433  33333322221       12222  999988887654

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=97.78  E-value=0.00026  Score=60.64  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=77.8

Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 020164           27 EQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH  105 (330)
Q Consensus        27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h  105 (330)
                      |.+|..||+...-.|.-..+-+|++.-.+ ...-...+..|.|||..  ++-..++.||+|||.|++|+...|..++-+.
T Consensus         2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~--~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~   79 (133)
T smart00288        2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNN--KNPHVALLALTLLDACVKNCGSKFHLEVASK   79 (133)
T ss_pred             hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH
Confidence            67899999977777887888888887644 33468899999999985  4788899999999999999998888877543


Q ss_pred             hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       106 ~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      -+ +..|...  ..+  +.....|++|+..++.-..
T Consensus        80 ~f-l~~L~~l--~~~--~~~~~~Vk~kil~li~~W~  110 (133)
T smart00288       80 EF-LNELVKL--IKP--KYPLPLVKKRILELIQEWA  110 (133)
T ss_pred             HH-HHHHHHH--HcC--CCCcHHHHHHHHHHHHHHH
Confidence            32 2333321  111  1111238988888776443

Unpublished observations. Domain of unknown function.

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=97.75  E-value=0.00043  Score=60.27  Aligned_cols=112  Identities=21%  Similarity=0.222  Sum_probs=77.9

Q ss_pred             hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020164           25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR  103 (330)
Q Consensus        25 ~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r  103 (330)
                      |.+.+|..||+...-.|.=...-+|++.-.+. ..-...|..|.|||. ++++-+.++-||+|||-|++|+-.+|-.++-
T Consensus         1 ~~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~-~~~n~~v~l~aL~LLe~~vkNCG~~fh~eia   79 (141)
T cd03565           1 PVGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLN-GNKNHKEVMLTLTVLETCVKNCGHRFHVLVA   79 (141)
T ss_pred             CHhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            46889999999766666667777777775443 345789999999996 4568889999999999999999999888874


Q ss_pred             hhhhhhhc-cccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          104 EHSYQIST-LSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       104 ~h~~~I~~-L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      ..-+ +.. |...  +.++ .+.-..|++|+..|+.-..
T Consensus        80 sk~F-l~e~L~~~--i~~~-~~~~~~Vk~kil~li~~W~  114 (141)
T cd03565          80 KKDF-IKDVLVKL--INPK-NNPPTIVQEKVLALIQAWA  114 (141)
T ss_pred             HHHh-hhHHHHHH--Hccc-CCCcHHHHHHHHHHHHHHH
Confidence            3321 222 2221  1111 1223468888887776554

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=97.68  E-value=0.00065  Score=59.49  Aligned_cols=107  Identities=19%  Similarity=0.221  Sum_probs=79.5

Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 020164           27 EQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH  105 (330)
Q Consensus        27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h  105 (330)
                      |.+|..||+...-.|.=..+-+|+..--+ ...-...|..|.|||..  ++-..++.||+|||-|++|+...|-.++-+-
T Consensus         2 e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~--~n~~v~l~AL~LLe~~vkNCG~~fh~evask   79 (144)
T cd03568           2 DDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNH--KDPNVQLRALTLLDACAENCGKRFHQEVASR   79 (144)
T ss_pred             hHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH
Confidence            67899999977666776888888887543 44568899999999986  4688899999999999999999988887432


Q ss_pred             hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       106 ~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                       ..+..|...  +.+.   .-..|++|+..++.-..
T Consensus        80 -~Fl~eL~kl--~~~~---~~~~Vk~kil~li~~W~  109 (144)
T cd03568          80 -DFTQELKKL--INDR---VHPTVKEKLREVVKQWA  109 (144)
T ss_pred             -HHHHHHHHH--hccc---CCHHHHHHHHHHHHHHH
Confidence             223333322  1111   44589999988887664

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=97.65  E-value=0.0006  Score=58.19  Aligned_cols=109  Identities=20%  Similarity=0.162  Sum_probs=80.0

Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 020164           27 EQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH  105 (330)
Q Consensus        27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h  105 (330)
                      +..|.+||+...-.|.-..+.+|+..-.+ ...-.+.+..|.|||...  +-...+-||.|||.|++||...|..++-+.
T Consensus         2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~   79 (133)
T cd03561           2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADK   79 (133)
T ss_pred             hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhH
Confidence            46789999976667777888888887644 345689999999999874  688999999999999999999888887664


Q ss_pred             hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       106 ~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      -++.+ |..+  .... ...-..||+|+.+++.-..
T Consensus        80 ~fl~~-l~~l--~~~~-~~~~~~Vk~kil~ll~~W~  111 (133)
T cd03561          80 EFLLE-LVKI--AKNS-PKYDPKVREKALELILAWS  111 (133)
T ss_pred             HHHHH-HHHH--hCCC-CCCCHHHHHHHHHHHHHHH
Confidence            33333 3332  1111 1234589999888876554

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=97.60  E-value=0.0011  Score=57.80  Aligned_cols=111  Identities=22%  Similarity=0.233  Sum_probs=80.9

Q ss_pred             CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020164           23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD  101 (330)
Q Consensus        23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e  101 (330)
                      .++.+..|..||+...-.|.=..+-+|++.--. ...-.+.+..|.|||..  ++-+.++-||+|||.|++|+...|-.+
T Consensus         2 ~~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~e   79 (142)
T cd03569           2 VSEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLS--KNPNVQLYALLLLESCVKNCGTHFHDE   79 (142)
T ss_pred             cchHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            378899999999977677777887888777543 33457899999999977  578999999999999999998887777


Q ss_pred             HHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          102 IREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       102 ~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      +-+.- .+..|...  ...   ..-..|++|+-.++.-..
T Consensus        80 vas~~-fl~~l~~l--~~~---~~~~~Vk~kil~li~~W~  113 (142)
T cd03569          80 VASRE-FMDELKDL--IKT---TKNEEVRQKILELIQAWA  113 (142)
T ss_pred             HhhHH-HHHHHHHH--Hcc---cCCHHHHHHHHHHHHHHH
Confidence            75422 12223221  111   234588888888876544

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=97.45  E-value=0.0023  Score=55.97  Aligned_cols=111  Identities=18%  Similarity=0.200  Sum_probs=80.7

Q ss_pred             hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020164           25 GIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR  103 (330)
Q Consensus        25 ~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r  103 (330)
                      +.|..|..||+.-.-.|.-..+-+|++.-.+ ...-...+..|.|||+..  +-..++-||+|||-|++|+-.+|-.++-
T Consensus         1 ~~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~eva   78 (139)
T cd03567           1 SLEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSP--QEKEALQALTVLEACMKNCGERFHSEVG   78 (139)
T ss_pred             CHHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            3688999999976667777788888887643 334578999999999854  5778999999999999999998877774


Q ss_pred             hh--hh-hhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          104 EH--SY-QISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       104 ~h--~~-~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      ..  +. +++-+.. .|   .|...-..|++|+..++.--.
T Consensus        79 s~~Fl~el~kl~~~-k~---~~~~~~~~Vk~kil~li~~W~  115 (139)
T cd03567          79 KFRFLNELIKLVSP-KY---LGSRTSEKVKTKIIELLYSWT  115 (139)
T ss_pred             hHHHHHHHHHHhcc-cc---CCCCCCHHHHHHHHHHHHHHH
Confidence            32  22 2222221 11   133445799999988887665

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.014  Score=60.31  Aligned_cols=108  Identities=18%  Similarity=0.127  Sum_probs=77.8

Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020164           26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE  104 (330)
Q Consensus        26 ~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~  104 (330)
                      +..+|..||+..--+|.=.+--+||+.--. ...-.+++..|.|||+.+..  +..+=||+|||=|++|+-+.|=..+-+
T Consensus         2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s--~vq~lALtlLE~cvkNCG~~fh~~Va~   79 (470)
T KOG1087|consen    2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNS--KVQLLALTLLETCVKNCGYSFHLQVAS   79 (470)
T ss_pred             hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCc--HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            467899999977667776777888887633 23456999999999987654  777889999999999998776655533


Q ss_pred             hhhhhhccccceeeCCCCCccchhHHHHHHHHHHhh
Q 020164          105 HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALV  140 (330)
Q Consensus       105 h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL  140 (330)
                      --++=+.++.|++.     ..-..||+|+-.+|+.=
T Consensus        80 k~fL~emVk~~k~~-----~~~~~Vr~kiL~LI~~W  110 (470)
T KOG1087|consen   80 KEFLNEMVKRPKNK-----PRDLKVREKILELIDTW  110 (470)
T ss_pred             HHHHHHHHhccccC-----CcchhHHHHHHHHHHHH
Confidence            22222344555443     14568999988888653

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=94.46  E-value=0.21  Score=51.06  Aligned_cols=85  Identities=26%  Similarity=0.364  Sum_probs=64.6

Q ss_pred             CCchHHHHHHHHhc----CCCCCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCH
Q 020164           22 KVPGIEQKVLDATS----NEPWGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSE   96 (330)
Q Consensus        22 n~S~~E~kVrEATs----nDpWGPt~s~L~EIA~~T-yn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSE   96 (330)
                      ..++.|..|..||+    +|+|+    ++-+||..- -+++-=+..|+.|.|||+..  .--.|+-||+||.=|+.|+-.
T Consensus         5 ~~n~~e~~v~KAT~e~nT~enW~----~IlDvCD~v~~~~~~~kd~lk~i~KRln~~--dphV~L~AlTLlda~~~NCg~   78 (462)
T KOG2199|consen    5 SANPFEQDVEKATDEKNTSENWS----LILDVCDKVGSDPDGGKDCLKAIMKRLNHK--DPHVVLQALTLLDACVANCGK   78 (462)
T ss_pred             CcchHHHHHHHhcCcccccccHH----HHHHHHHhhcCCCcccHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHhcch
Confidence            35789999999998    57884    555666553 34445578899999999865  456899999999999999999


Q ss_pred             HHHHHHH--hhhhhhhcc
Q 020164           97 RVIDDIR--EHSYQISTL  112 (330)
Q Consensus        97 rvV~e~r--~h~~~I~~L  112 (330)
                      +|.-++.  +....++.|
T Consensus        79 ~~r~EVsSr~F~~el~al   96 (462)
T KOG2199|consen   79 RFRLEVSSRDFTTELRAL   96 (462)
T ss_pred             HHHHHHhhhhHHHHHHHH
Confidence            9888884  444445444

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=83.71  E-value=2.3  Score=47.34  Aligned_cols=108  Identities=16%  Similarity=0.119  Sum_probs=83.1

Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhhh
Q 020164           27 EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHS  106 (330)
Q Consensus        27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h~  106 (330)
                      -.-|+.|+|.+...|-.++..-|.-.|++.+.-...+.+| ||+.-. .+-...+|.+.||.=||.-|.+.++.+...+.
T Consensus         8 ~~av~KAis~~Et~~K~KH~Rt~I~gTh~eksa~~FWt~i-k~~PL~-~~~VltwKfchllHKvLreGHpsal~es~r~r   85 (980)
T KOG0980|consen    8 LEAVQKAISKDETPPKRKHVRTIIVGTHDEKSSKIFWTTI-KRQPLE-NHEVLTWKFCHLLHKVLREGHPSALEESQRYK   85 (980)
T ss_pred             HHHHHHHhccccCCCchhhhhheeeeecccccchhHHHHh-hccccc-cchHHHHHHHHHHHHHHHcCCcchhHHHHHHH
Confidence            3568899999999999999999999999876543333333 444322 35567889999999999999999999999999


Q ss_pred             hhhhccccceeeCCCCCccchhHHHHHHHHHH
Q 020164          107 YQISTLSDFQYIDSSGRDQGSNVRKKSQSLVA  138 (330)
Q Consensus       107 ~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~  138 (330)
                      .-|+.|..+--.-  -.+.|.-||.=+|-|..
T Consensus        86 ~~i~~l~r~w~~l--s~~Yg~lI~~Y~klL~~  115 (980)
T KOG0980|consen   86 KWITQLGRMWGHL--SDGYGPLIRAYVKLLHD  115 (980)
T ss_pred             HHHHHHHHHhccc--cccchHHHHHHHHHHHH
Confidence            9999998762211  15788888887766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	330
1h0a_A	158	Epsin Enth Bound To Ins(1,4,5)p3 Length = 158		3e-38
1eyh_A	144	Crystal Structure Of The Epsin N-Terminal Homology		5e-38
1inz_A	148	Solution Structure Of The Epsin N-Terminal Homology		1e-36
1edu_A	149	Crystal Structure Of The Enth Domain Of Rat Epsin 1		7e-36
3onk_A	150	Yeast Ent3_enth Domain Length = 150		1e-29
1xgw_A	176	The Crystal Structure Of Human Enthoprotin N-Termin		4e-29
2qy7_A	147	Crystal Structure Of Human Epsinr Enth Domain Lengt		4e-29

>pdb|1H0A|A Chain A, Epsin Enth Bound To Ins(1,4,5)p3 Length = 158

Iteration: 1
 Score =  155 bits (392), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 98/137 (71%)
Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
           E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +IWKR+ND GKNWRHVYKA+T+
Sbjct: 21  EIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTL 80
Query: 87  LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
           +EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 81  MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 140
Query: 147 IEVRQKAAANRDKFRNT 163
            E R  A   ++K   T
Sbjct: 141 REERAHALKTKEKLAQT 157

>pdb|1EYH|A Chain A, Crystal Structure Of The Epsin N-Terminal Homology (Enth) Domain At 1.56 Angstrom Resolution Length = 144

Iteration: 1
 Score =  154 bits (390), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 98/137 (71%)
Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
           E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +IWKR+ND GKNWRHVYKA+T+
Sbjct: 7   EIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTL 66
Query: 87  LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
           +EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 67  MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 126
Query: 147 IEVRQKAAANRDKFRNT 163
            E R  A   ++K   T
Sbjct: 127 REERAHALKTKEKLAQT 143

>pdb|1INZ|A Chain A, Solution Structure Of The Epsin N-Terminal Homology (Enth) Domain Of Human Epsin Length = 148

Iteration: 1
 Score =  150 bits (379), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 93/124 (75%)
Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
           E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +IWKR+ND GKNWRHVYKA+T+
Sbjct: 25  EIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTL 84
Query: 87  LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
           +EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 85  MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 144
Query: 147 IEVR 150
            E R
Sbjct: 145 REER 148

>pdb|1EDU|A Chain A, Crystal Structure Of The Enth Domain Of Rat Epsin 1 Length = 149

Iteration: 1
 Score =  147 bits (372), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 93/140 (66%)
Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
           E KV +ATSN+PWGP  +L ++IA  T N   +  I   IWKR+ND GKNWRHVYKA T+
Sbjct: 10  EIKVREATSNDPWGPSSSLXSEIADLTYNVVAFSEIXSXIWKRLNDHGKNWRHVYKAXTL 69
Query: 87  LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
            EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 70  XEYLIKTGSERVSQQCKENXYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 129
Query: 147 IEVRQKAAANRDKFRNTTAG 166
            E R  A   ++K   T   
Sbjct: 130 REERAHALKTKEKLAQTATA 149

>pdb|3ONK|A Chain A, Yeast Ent3_enth Domain Length = 150

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 1/137 (0%)
Query: 26  IEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIND-TGKNWRHVYKAL 84
           +E KV +AT+NEPWG   TL+  I+Q T N+ E + I+ +I++R  +  G  WR +YKAL
Sbjct: 12  MEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKAL 71
Query: 85  TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKE 144
            +L+YL+ HGSER IDD R     I  L  F YIDS GRDQG NVR + ++L+ L++D  
Sbjct: 72  QLLDYLIKHGSERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDN 131
Query: 145 RIIEVRQKAAANRDKFR 161
           +I   R+KA     K++
Sbjct: 132 KIRAERKKARETAKKYK 148

>pdb|1XGW|A Chain A, The Crystal Structure Of Human Enthoprotin N-Terminal Domain Length = 176

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 88/132 (66%), Gaps = 1/132 (0%)
Query: 20  VLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKR-INDTGKNWR 78
           V+    IE KV +AT+++PWGP G L+ +IA+AT  Y ++  ++ ++W R + D  KNWR
Sbjct: 29  VMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWR 88
Query: 79  HVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVA 138
            VYK+L +L YL+ +GSERV+   REH Y + +L ++ ++D  G+DQG N+R+K + LV 
Sbjct: 89  RVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVE 148
Query: 139 LVNDKERIIEVR 150
              D +R+ E R
Sbjct: 149 FAQDDDRLREER 160

>pdb|2QY7|A Chain A, Crystal Structure Of Human Epsinr Enth Domain Length = 147

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
Query: 26  IEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKR-INDTGKNWRHVYKAL 84
           IE KV +AT+++PWGP G L+ +IA+AT  Y ++  ++ ++W R + D  KNWR VYK+L
Sbjct: 5   IESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSL 64
Query: 85  TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKE 144
            +L YL+ +GSERV+   REH Y + +L ++ ++D  G+DQG N+R+K + LV    D +
Sbjct: 65  LLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDD 124
Query: 145 RIIEVR 150
           R+ E R
Sbjct: 125 RLREER 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
1inz_A	148	EPS15-interacting portein(epsin); alpha-helix, rik	3e-58
1eyh_A	144	Epsin; superhelix of helices, cell cycle; 1.56A {R	9e-58
1xgw_A	176	Epsin 4; ENTH, enthoprotin, clathrin-associated, e	1e-54
3onk_A	150	Epsin-3, ENT3; helix, protein transport; 2.09A {Sa	6e-52
3zyl_A	271	Phosphatidylinositol-binding clathrin assembly PR;	9e-24
3zym_A	310	Phosphatidylinositol-binding clathrin assembly PR	8e-23
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	1e-21
1hx8_A	299	Synapse-enriched clathrin adaptor protein LAP; all	4e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148

 Score =  183 bits (466), Expect = 3e-58
 Identities = 69/144 (47%), Positives = 99/144 (68%)

Query: 7   QTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVI 66
            +   ++R +   V      E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +I
Sbjct: 5   MSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMI 64

Query: 67  WKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQG 126
           WKR+ND GKNWRHVYKA+T++EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG
Sbjct: 65  WKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQG 124

Query: 127 SNVRKKSQSLVALVNDKERIIEVR 150
            NVR+K++ LVAL+ D++R+ E R
Sbjct: 125 VNVREKAKQLVALLRDEDRLREER 148

>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144

 Score =  182 bits (463), Expect = 9e-58
 Identities = 70/141 (49%), Positives = 98/141 (69%)

Query: 23  VPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYK 82
               E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +IWKR+ND GKNWRHVYK
Sbjct: 3   YSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYK 62

Query: 83  ALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVND 142
           A+T++EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG NVR+K++ LVAL+ D
Sbjct: 63  AMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRD 122

Query: 143 KERIIEVRQKAAANRDKFRNT 163
           ++R+ E R  A   ++K   T
Sbjct: 123 EDRLREERAHALKTKEKLAQT 143

>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Length = 176

 Score =  175 bits (445), Expect = 1e-54
 Identities = 62/155 (40%), Positives = 99/155 (63%), Gaps = 1/155 (0%)

Query: 7   QTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVI 66
              R++       V+    IE KV +AT+++PWGP G L+ +IA+AT  Y ++  ++ ++
Sbjct: 16  WKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNML 75

Query: 67  WKR-INDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQ 125
           W R + D  KNWR VYK+L +L YL+ +GSERV+   REH Y + +L ++ ++D  G+DQ
Sbjct: 76  WSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQ 135

Query: 126 GSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160
           G N+R+K + LV    D +R+ E R+KA  N+DK+
Sbjct: 136 GINIRQKVKELVEFAQDDDRLREERKKAKKNKDKY 170

>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Length = 150

 Score =  167 bits (425), Expect = 6e-52
 Identities = 62/143 (43%), Positives = 88/143 (61%), Gaps = 1/143 (0%)

Query: 20  VLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIND-TGKNWR 78
                 +E KV +AT+NEPWG   TL+  I+Q T N+ E + I+ +I++R  +  G  WR
Sbjct: 6   DPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWR 65

Query: 79  HVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVA 138
            +YKAL +L+YL+ HGSER IDD R     I  L  F YIDS GRDQG NVR + ++L+ 
Sbjct: 66  QIYKALQLLDYLIKHGSERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIE 125

Query: 139 LVNDKERIIEVRQKAAANRDKFR 161
           L++D  +I   R+KA     K++
Sbjct: 126 LLSDDNKIRAERKKARETAKKYK 148

>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271

 Score = 97.6 bits (242), Expect = 9e-24
 Identities = 29/146 (19%), Positives = 62/146 (42%), Gaps = 10/146 (6%)

Query: 7   QTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEY-QMIIGV 65
           Q+  D +    +  +    + + V  AT++E  GP    L  + Q T   +     +   
Sbjct: 11  QSLTD-RITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADS 69

Query: 66  IWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQ 125
           +++R  ++  +W  V+K+L    +L+ +G+ER I  +   +   +  +        G D 
Sbjct: 70  LFERTTNS--SWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDM 127

Query: 126 GSNVRKKSQSLVALVNDKERIIEVRQ 151
            + +R+ S+ L       E+ +  RQ
Sbjct: 128 STFIRRYSRYL------NEKAVSYRQ 147

>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310

 Score = 95.7 bits (237), Expect = 8e-23
 Identities = 29/146 (19%), Positives = 62/146 (42%), Gaps = 10/146 (6%)

Query: 7   QTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEY-QMIIGV 65
           Q+  D +    +  +    + + V  AT++E  GP    L  + Q T   +     +   
Sbjct: 11  QSLTD-RITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADS 69

Query: 66  IWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQ 125
           +++R  ++  +W  V+K+L    +L+ +G+ER I  +   +   +  +        G D 
Sbjct: 70  LFERTTNS--SWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDM 127

Query: 126 GSNVRKKSQSLVALVNDKERIIEVRQ 151
            + +R+ S+ L       E+ +  RQ
Sbjct: 128 STFIRRYSRYL------NEKAVSYRQ 147

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Length = 140

 Score = 88.1 bits (218), Expect = 1e-21
 Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 6/141 (4%)

Query: 15  GVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHE--YQMIIGVIWKRIND 72
           G +    +     + +   TS+E        L +I    R+ H    +     I KR+++
Sbjct: 1   GSSGSSGESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDN 60

Query: 73  TGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSS--GRDQGSNVR 130
                +   KAL +++Y V         +++ +S  +  L  ++       G      VR
Sbjct: 61  KSPIVK--QKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVR 118

Query: 131 KKSQSLVALVNDKERIIEVRQ 151
           + +   ++ +  +E       
Sbjct: 119 ETAHETISAIFSEENGSGPSS 139

>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299

 Score = 76.4 bits (187), Expect = 4e-16
 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 7   QTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEY-QMIIGV 65
           QT  D +    +  L   G+ + V  AT+ E  GP    L  +       +     +  +
Sbjct: 6   QTIND-RLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANL 64

Query: 66  IWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHS--YQISTLSDFQYIDSSG- 122
           + +R  +   NW  VYK+L    +L+A+G+ER +  +   +  + +S+  D   +   G 
Sbjct: 65  LIERSQN--ANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGM 122

Query: 123 --------RDQGSNVRKKSQSLVALVNDKERIIEVRQKA 153
                    D    +R+ ++ L       E+ +  R  A
Sbjct: 123 GVPGGRMGYDMSPFIRRYAKYL------NEKSLSYRAMA 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 50/377 (13%), Positives = 108/377 (28%), Gaps = 98/377 (25%)

Query: 3   KAFDQ------TFRD--IKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIA---- 50
            AF+       T R   +   ++        ++   +  T +E       LL        
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS----LLLKYLDCRP 315

Query: 51  -----QATRNYHEYQMIIGVIWKRIND---TGKNWRHV-YKAL-TVLEYLVAHGSERVID 100
                +           + +I + I D   T  NW+HV    L T++E  +         
Sbjct: 316 QDLPREVLTTN---PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---A 369

Query: 101 DIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVAL-----VNDKERII-EVRQKAA 154
           + R+  +    LS F            +    +  L  +      +D   ++ ++ + + 
Sbjct: 370 EYRKM-FD--RLSVFPP----------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 155 ANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDN------DRYEGRYGNDDQNGYGREREYG 208
             +    +T       P  Y       +          D Y       D +         
Sbjct: 417 VEKQPKESTI----SIPSIYLELKVKLENEYALHRSIVDHYNIPKT-FDSDDLIPPYLDQ 471

Query: 209 YGYRDDDRSSRNGDSYSRDGDRY---GRDYEDRYS--RDVYRDDDY-RGRSRSVDAYQDG 262
           Y              YS  G  +     ++ +R +  R V+ D  +   + R      D 
Sbjct: 472 Y-------------FYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKIR-----HDS 511

Query: 263 SSRNSDDGQLSSRGLERKFSEQNIGAPPSYEEAVSE-----SRSPVHSERYLSRNIVM-- 315
           ++ N+    L++    + +        P YE  V+       +   +       +++   
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

Query: 316 ---QSDCAYNYTHQCVQ 329
              + +  +   H+ VQ
Sbjct: 572 LMAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
1xgw_A	176	Epsin 4; ENTH, enthoprotin, clathrin-associated, e	100.0
3onk_A	150	Epsin-3, ENT3; helix, protein transport; 2.09A {Sa	100.0
1eyh_A	144	Epsin; superhelix of helices, cell cycle; 1.56A {R	100.0
1inz_A	148	EPS15-interacting portein(epsin); alpha-helix, rik	100.0
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	100.0
3zyl_A	271	Phosphatidylinositol-binding clathrin assembly PR;	99.61
3zym_A	310	Phosphatidylinositol-binding clathrin assembly PR	99.6
1hx8_A	299	Synapse-enriched clathrin adaptor protein LAP; all	99.19
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	97.94
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	97.9
3rru_A	152	TOM1L1 protein; structural genomics, PSI-biology,	97.89
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	97.85
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	97.85
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	97.85
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	97.67
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	97.66
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	97.66

>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E

Probab=100.00  E-value=1.7e-58  Score=411.96  Aligned_cols=157  Identities=39%  Similarity=0.809  Sum_probs=133.7

Q ss_pred             HHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHh-ccCCCchhHHHHHHHH
Q 020164            8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRI-NDTGKNWRHVYKALTV   86 (330)
Q Consensus         8 ~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL-~~~gk~WR~VyKaL~L   86 (330)
                      .++.++|+|+|+|++||++|++|+||||||||||++++|+|||++||++++|.+||++||||| ++++++||||||||+|
T Consensus        17 ~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~L   96 (176)
T 1xgw_A           17 KVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLL   96 (176)
T ss_dssp             -----------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence            466788999999999999999999999999999999999999999999999999999999995 7889999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhccc
Q 020164           87 LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTT  164 (330)
Q Consensus        87 LEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky~g~~  164 (330)
                      |||||+||||+||+|+|+|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|++
T Consensus        97 LeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k~r~k~~G~~  174 (176)
T 1xgw_A           97 LAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVS  174 (176)
T ss_dssp             HHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC-----------
T ss_pred             HHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999875

>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A

Probab=100.00  E-value=2.4e-58  Score=401.69  Aligned_cols=148  Identities=42%  Similarity=0.747  Sum_probs=133.5

Q ss_pred             hcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccC-CCchhHHHHHHHHHHHHHHcC
Q 020164           16 VNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDT-GKNWRHVYKALTVLEYLVAHG   94 (330)
Q Consensus        16 vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~-gk~WR~VyKaL~LLEYLLkNG   94 (330)
                      ++|+|++||++|++|+|||||||||||+++|+|||++||++.+|.+||++|||||+++ +++||||||||+||||||+||
T Consensus         2 ~~n~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG   81 (150)
T 3onk_A            2 LMSVDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG   81 (150)
T ss_dssp             ------CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred             hhhhhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence            6799999999999999999999999999999999999999999999999999999986 689999999999999999999


Q ss_pred             CHHHHHHHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhcc
Q 020164           95 SERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT  163 (330)
Q Consensus        95 SErvV~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky~g~  163 (330)
                      ||+||+|+|+|+++|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|+
T Consensus        82 se~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~e~L~~eR~ka~~~~~k~~g~  150 (150)
T 3onk_A           82 SERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDNKIRAERKKARETAKKYKGV  150 (150)
T ss_dssp             CHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999885

>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A

Probab=100.00  E-value=3.6e-55  Score=379.04  Aligned_cols=143  Identities=49%  Similarity=0.867  Sum_probs=140.5

Q ss_pred             cCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 020164           21 LKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID  100 (330)
Q Consensus        21 ~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~  100 (330)
                      .+||++|++|++|||||||||++++|++||++||++.+|.+||++|||||++++++||||||||+||||||+||||+||+
T Consensus         1 ~~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~   80 (144)
T 1eyh_A            1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ   80 (144)
T ss_dssp             CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhcc
Q 020164          101 DIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT  163 (330)
Q Consensus       101 e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky~g~  163 (330)
                      |+++|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.+.
T Consensus        81 ~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D~~~L~~eR~~a~~~r~k~~~~  143 (144)
T 1eyh_A           81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQT  143 (144)
T ss_dssp             HHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999864

>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1

Probab=100.00  E-value=1.2e-54  Score=377.46  Aligned_cols=143  Identities=48%  Similarity=0.864  Sum_probs=139.7

Q ss_pred             HHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 020164            8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVL   87 (330)
Q Consensus         8 ~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LL   87 (330)
                      +++.|+|+|+|+|++||++|++|++|||||||||++++|++||++||++.+|.+||++|||||++++++||||||||+||
T Consensus         6 ~~~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~ll   85 (148)
T 1inz_A            6 STSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLM   85 (148)
T ss_dssp             CCCCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHH
Q 020164           88 EYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVR  150 (330)
Q Consensus        88 EYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER  150 (330)
                      ||||+||||+||+|+++|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||
T Consensus        86 eyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~e~L~~eR  148 (148)
T 1inz_A           86 EYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREER  148 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSCCSCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999887

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=100.00  E-value=8.3e-35  Score=251.14  Aligned_cols=117  Identities=17%  Similarity=0.205  Sum_probs=110.8

Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHhcCh--hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020164           27 EQKVLDATSNEPWGPHGTLLADIAQATRNY--HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE  104 (330)
Q Consensus        27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~--~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~  104 (330)
                      +.||++|||||||||++.+|.|||++||+.  +.|.+||++||+||+++  .|+++||||+||+||++|||++|+.++|.
T Consensus        13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~   90 (140)
T 1vdy_A           13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQR   90 (140)
T ss_dssp             HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence            679999999999999999999999999996  55799999999999986  57899999999999999999999999999


Q ss_pred             hhhhhhccccceeeCC--CCCccchhHHHHHHHHHHhhcCHHH
Q 020164          105 HSYQISTLSDFQYIDS--SGRDQGSNVRKKSQSLVALVNDKER  145 (330)
Q Consensus       105 h~~~I~~L~~Fqy~D~--~GkD~G~nVR~KAk~Il~LL~D~e~  145 (330)
                      |+++|++|.+|+|+++  +|+|+|++||++|++|++||.|++.
T Consensus        91 ~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~  133 (140)
T 1vdy_A           91 NSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEEN  133 (140)
T ss_dssp             TTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSS
T ss_pred             hHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCC
Confidence            9999999999999975  8999999999999999999998764

>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*

Probab=99.61  E-value=1.6e-15  Score=142.33  Aligned_cols=128  Identities=23%  Similarity=0.352  Sum_probs=110.9

Q ss_pred             hhhHHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCchhHHHHH
Q 020164            5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA   83 (330)
Q Consensus         5 ~~q~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~-~y~~Im~vLwKRL~~~gk~WR~VyKa   83 (330)
                      .+|++.|--.++|+.|.. +++|+.|..||++++|+|..+.+.+|..+|++.. .+..||..|++||.  .++|++++||
T Consensus         9 ~~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~--~~~w~v~~Ka   85 (271)
T 3zyl_A            9 SGQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKS   85 (271)
T ss_dssp             ---CHHHHHHHHHHHHHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT--SSCHHHHHHH
T ss_pred             ccccHHHHHHHHHhcccc-hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC--CCchHHHHHH
Confidence            578888888899999988 9999999999999999999999999999999875 47999999999998  4799999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeC-CCCCccchhHHHHHHHH
Q 020164           84 LTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYID-SSGRDQGSNVRKKSQSL  136 (330)
Q Consensus        84 L~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D-~~GkD~G~nVR~KAk~I  136 (330)
                      |+||.+||..|++.|+.+++.|.. |-.|.+|.... ..|.|++.-||.-|+-|
T Consensus        86 LivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL  138 (271)
T 3zyl_A           86 LITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL  138 (271)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHhCCC-eechhccCCCCCCCcccccHHHHHHHHHH
Confidence            999999999999999999988875 55888875432 24567788899999877

>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}

Probab=99.60  E-value=1.6e-15  Score=144.57  Aligned_cols=128  Identities=23%  Similarity=0.359  Sum_probs=110.4

Q ss_pred             hhhHHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCchhHHHHH
Q 020164            5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA   83 (330)
Q Consensus         5 ~~q~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~-~y~~Im~vLwKRL~~~gk~WR~VyKa   83 (330)
                      .+|++.|=-.++|+.|.. ++.|+.|+.||++++|+|..+.+.+|..+|++.. .+..||..|++||.  .++|++++||
T Consensus         9 ~~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~--~~~w~vv~Ka   85 (310)
T 3zym_A            9 SGQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKS   85 (310)
T ss_dssp             ---CHHHHHHHHHHCCHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT--SSCHHHHHHH
T ss_pred             ccccHHHHHHHHHhcccc-cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC--CCchHHHHHH
Confidence            467777777889998888 9999999999999999999999999999999875 47899999999998  4799999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeCC-CCCccchhHHHHHHHH
Q 020164           84 LTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS-SGRDQGSNVRKKSQSL  136 (330)
Q Consensus        84 L~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~-~GkD~G~nVR~KAk~I  136 (330)
                      |+||.+||..|++.|+.+++.|.. |-.|.+|.-... .|.+++..||.-|+-|
T Consensus        86 LivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL  138 (310)
T 3zym_A           86 LITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL  138 (310)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHhCCC-eeecccccCCCCcCcccccHHHHHHHHHH
Confidence            999999999999999999988875 448888853321 4567889999999877

>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3

Probab=99.19  E-value=5.8e-11  Score=112.25  Aligned_cols=129  Identities=23%  Similarity=0.313  Sum_probs=90.9

Q ss_pred             hhHHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCchhHHHHHH
Q 020164            6 DQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKAL   84 (330)
Q Consensus         6 ~q~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~-~y~~Im~vLwKRL~~~gk~WR~VyKaL   84 (330)
                      .|++++.-..+|+-.. -++.|+.|..||+.++|+|..+.+.+|..+|++.. ....++..|++|+  ..++|.+++|||
T Consensus         5 ~~~~~~~~~a~k~~~~-~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~--~~~~w~va~K~L   81 (299)
T 1hx8_A            5 GQTINDRLLAARHSLA-GQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERS--QNANWVVVYKSL   81 (299)
T ss_dssp             ------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH--TCSSHHHHHHHH
T ss_pred             hHHHHHHHHHHhhccc-hhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhc--cCCcHHHHHHHH
Confidence            4556665555664332 26899999999999999999999999999998873 4688999999996  445999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeC------------CCCCccchhHHHHHHHHHH
Q 020164           85 TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYID------------SSGRDQGSNVRKKSQSLVA  138 (330)
Q Consensus        85 ~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D------------~~GkD~G~nVR~KAk~Il~  138 (330)
                      +||..||..|++.|+.++..+.. +-.|.+|.=..            +.|.|++..||.-|+-|.+
T Consensus        82 ivlH~llreG~~~~~~~l~~~~~-~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~  146 (299)
T 1hx8_A           82 ITTHHLMAYGNERFMQYLASSNS-TFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNE  146 (299)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTC-CCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHhCCc-ccchhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence            99999999999999999966533 34556662110            1234678899999975543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=97.94  E-value=6.2e-05  Score=65.53  Aligned_cols=109  Identities=20%  Similarity=0.154  Sum_probs=77.6

Q ss_pred             CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020164           23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD  101 (330)
Q Consensus        23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e  101 (330)
                      -+|.+..|..||+...-.|.-.+..+|++.-.. ...-.+.+..|.|||...  +-...+-||+|||.|++|+...|-.+
T Consensus        13 ~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~--n~~vql~AL~LLd~~vkNcG~~Fh~e   90 (163)
T 1x5b_A           13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHK--VPHVALQALTLLGACVANCGKIFHLE   90 (163)
T ss_dssp             CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            378899999999976667777778888877532 345678999999999853  44566779999999999998887766


Q ss_pred             HHh--hhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          102 IRE--HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       102 ~r~--h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      +-.  -+..|..|-     ..+   .-..||+|+..++.-..
T Consensus        91 vas~~Fl~el~~l~-----~~~---~~~~Vk~kil~li~~W~  124 (163)
T 1x5b_A           91 VCSRDFATEVRAVI-----KNK---AHPKVCEKLKSLMVEWS  124 (163)
T ss_dssp             HTSHHHHHHHHHHH-----HTT---CCHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHH-----ccC---CCHHHHHHHHHHHHHHH
Confidence            633  222222111     111   12479999998887654

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=97.90  E-value=0.00018  Score=62.08  Aligned_cols=111  Identities=22%  Similarity=0.189  Sum_probs=80.8

Q ss_pred             chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164           24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI  102 (330)
Q Consensus        24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~  102 (330)
                      |+++..|..||+...-.|.-...-+|++.-.. ...-.+.+..|.|||.. .++...++-||+|||.|++|+-..|-.++
T Consensus        15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~-~~n~~v~l~AL~LLd~~vkNcG~~fh~ev   93 (157)
T 1elk_A           15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVG-NKNFHEVMLALTVLETCVKNCGHRFHVLV   93 (157)
T ss_dssp             SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            58899999999977667777888888887532 34668999999999974 34677779999999999999988888777


Q ss_pred             Hh--hhhh--hhccccceeeCCCCCccchhHHHHHHHHHHhhcC
Q 020164          103 RE--HSYQ--ISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVND  142 (330)
Q Consensus       103 r~--h~~~--I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D  142 (330)
                      -+  -+..  ++.+.      +++ +.-..||+|+.+++.-..+
T Consensus        94 a~~~fl~e~Lvk~~~------~k~-~~~~~Vk~kil~li~~W~~  130 (157)
T 1elk_A           94 ASQDFVESVLVRTIL------PKN-NPPTIVHDKVLNLIQSWAD  130 (157)
T ss_dssp             TSHHHHHHHTHHHHS------TTT-CCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhc------cCC-CCcHHHHHHHHHHHHHHHH
Confidence            43  2222  22221      111 1235899999888876553

>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}

Probab=97.89  E-value=0.00016  Score=62.64  Aligned_cols=114  Identities=10%  Similarity=0.108  Sum_probs=79.9

Q ss_pred             chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164           24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI  102 (330)
Q Consensus        24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~  102 (330)
                      |+++..|..||+..--.|.-...-+|++.-.. ...-.+.|..|.|||. .+++.+.++-||+|||-|++|+-..|-.++
T Consensus        15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~-~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei   93 (152)
T 3rru_A           15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRIS-KNYNHKEIQLTLSLIDMCVQNCGPSFQSLI   93 (152)
T ss_dssp             SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHT-TCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            89999999999966555665677788877532 3456899999999997 445777777799999999999999999888


Q ss_pred             HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       103 r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      -..-++-+.|...  +.+.. ..-..||+|+..++.-..
T Consensus        94 ask~Fl~e~L~kl--~~~~~-~~~~~Vk~kil~li~~Wa  129 (152)
T 3rru_A           94 VKKEFVKENLVKL--LNPRY-NLPLDIQNRILNFIKTWS  129 (152)
T ss_dssp             SSHHHHTTTTGGG--GSGGG-CCCHHHHHHHHHHHHHHH
T ss_pred             HhhHhHHHHHHHH--hcCCC-CCcHHHHHHHHHHHHHHH
Confidence            4332211112211  11110 123479999888887554

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=97.85  E-value=8.9e-05  Score=67.35  Aligned_cols=110  Identities=24%  Similarity=0.225  Sum_probs=80.6

Q ss_pred             CCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 020164           22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID  100 (330)
Q Consensus        22 n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~  100 (330)
                      .-++.|..|..||+...-.|.-....+|++.-... ..=.+.|..|.|||..  ++-..++-||+|||.|++|+..+|-.
T Consensus         5 ~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~~   82 (226)
T 3zyq_A            5 GSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVHD   82 (226)
T ss_dssp             --CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHHH
Confidence            34789999999999877777778888888886543 3357899999999984  57778999999999999998887777


Q ss_pred             HH--HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          101 DI--REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       101 e~--r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      ++  ++-+..|..|-     .   ......|++|+.+|+.-..
T Consensus        83 eias~~fl~~l~~l~-----~---~~~~~~Vk~kil~li~~W~  117 (226)
T 3zyq_A           83 EVANKQTMEELKDLL-----K---RQVEVNVRNKILYLIQAWA  117 (226)
T ss_dssp             HHSSHHHHHHHHHHH-----H---HCCCHHHHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHh-----c---cCCCHHHHHHHHHHHHHHH
Confidence            76  23233332221     1   1123579999988887543

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=97.85  E-value=0.00014  Score=63.76  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=81.8

Q ss_pred             CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020164           23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD  101 (330)
Q Consensus        23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e  101 (330)
                      .|+.+..|..||+...-.|.-....+|++.-.. ...-.+.+..|.|||..  ++-...+-||+|||.|++||...|-.+
T Consensus        11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~--~n~~vql~AL~LLd~~vkNCG~~Fh~e   88 (171)
T 1juq_A           11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQS--PQEWEALQALTVLEACMKNCGRRFHNE   88 (171)
T ss_dssp             -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            478899999999976666777788888887533 34567899999999985  367788999999999999998888777


Q ss_pred             HHhh--hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          102 IREH--SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       102 ~r~h--~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      +-+.  +..|..|-.=.|   .|...-..||+|+.+++.-..
T Consensus        89 vas~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~  127 (171)
T 1juq_A           89 VGKFRFLNELIKVVSPKY---LGDRVSEKVKTKVIELLYSWT  127 (171)
T ss_dssp             HTSHHHHHHHHHHHCCCC---CCTTSCHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHhcccc---CCCCCCHHHHHHHHHHHHHHH
Confidence            6432  332222211011   123345799999998887654

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=97.85  E-value=0.00018  Score=61.03  Aligned_cols=107  Identities=20%  Similarity=0.187  Sum_probs=78.3

Q ss_pred             chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164           24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI  102 (330)
Q Consensus        24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~  102 (330)
                      +|.+..|..||+...-.|.-....+|++.-.. ...-.+.|..|.|||...  +-...+-||+|||.|++||-.+|-.++
T Consensus         4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkNcG~~f~~ev   81 (140)
T 3ldz_A            4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK--DPHVAMQALTLLGACVSNCGKIFHLEV   81 (140)
T ss_dssp             CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            78899999999986667777788888888654 345678999999999764  566788999999999999988777665


Q ss_pred             --HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          103 --REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       103 --r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                        ++-+..+..|-.         ..-..|++|+..++.-..
T Consensus        82 as~~Fl~el~~l~~---------~~~~~Vk~kil~li~~W~  113 (140)
T 3ldz_A           82 CSRDFASEVSNVLN---------KGHPKVCEKLKALMVEWT  113 (140)
T ss_dssp             SSHHHHHHHHHHHH---------HSCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHHH
Confidence              333332322211         012479999888886543

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=97.67  E-value=0.00045  Score=59.54  Aligned_cols=114  Identities=15%  Similarity=0.163  Sum_probs=83.1

Q ss_pred             CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020164           23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD  101 (330)
Q Consensus        23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e  101 (330)
                      -++.+..|..||+...-.|.-....+|++.-.. ...-...|..|.|||..  ++-...+-||+|||-|++|+-.+|-.+
T Consensus         9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~--~n~~v~l~AL~LLe~cvkNCG~~fh~e   86 (149)
T 3g2s_A            9 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS--PQEWEAIQALTVLETCMKSCGKRFHDE   86 (149)
T ss_dssp             CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            388899999999987777787889999998644 34567899999999984  578888999999999999999988777


Q ss_pred             HHh--hhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          102 IRE--HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       102 ~r~--h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      +-.  -+..|..|-.=+|   .|...-..||+|+..++.-..
T Consensus        87 ias~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~  125 (149)
T 3g2s_A           87 VGKFRFLNELIKVVSPKY---LGSRTSEKVKNKILELLYSWT  125 (149)
T ss_dssp             HTSHHHHHHHHHHHCTTT---TGGGSCHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHcccc---cCCCCCHHHHHHHHHHHHHHH
Confidence            733  2322221111011   122234689999988886553

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=97.66  E-value=0.00076  Score=57.87  Aligned_cols=111  Identities=14%  Similarity=0.116  Sum_probs=78.8

Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020164           26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE  104 (330)
Q Consensus        26 ~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~  104 (330)
                      .+..|..||+...-.|.-....+|++.-.. ...-...|..|.|||..  ++-...+-||+|||.|++|+...|-.++-+
T Consensus         2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~evas   79 (148)
T 1mhq_A            2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS--PQEKEALYALTVLEMCMNHCGEKFHSEVAK   79 (148)
T ss_dssp             HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred             HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence            478899999966666666778888887533 34568899999999974  577888999999999999999988777733


Q ss_pred             --hhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          105 --HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       105 --h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                        -+..|..|-.=+|   .|...-..||+|+..++.-..
T Consensus        80 ~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           80 FRFLNELIKVLSPKY---LGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHTTCCST---TSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccc---CCCCCCHHHHHHHHHHHHHHH
Confidence              3332222211011   122335689999988887554

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=97.66  E-value=0.00029  Score=63.30  Aligned_cols=110  Identities=22%  Similarity=0.213  Sum_probs=77.8

Q ss_pred             chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164           24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI  102 (330)
Q Consensus        24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~  102 (330)
                      |+.+..|..||+...-.|.-.++.+|++.-.. ...=.+.+..|.|||..  ++-...+-||+|||.|++|+-..|-.++
T Consensus         4 ~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~--~n~~~~l~aL~Lle~~vkNcG~~f~~ev   81 (220)
T 1dvp_A            4 SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHEEV   81 (220)
T ss_dssp             SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            57899999999976667777788888888643 33567899999999986  4778899999999999999877776665


Q ss_pred             HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       103 r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      -+.- .+..|..+  +..   ..-..||+|+.+|++-..
T Consensus        82 a~~~-fl~~l~~l--~~~---~~~~~Vk~kil~li~~W~  114 (220)
T 1dvp_A           82 FTKE-NCEMFSSF--LES---TPHENVRQKMLELVQTWA  114 (220)
T ss_dssp             SSHH-HHHHHHHH--HHH---CSCHHHHHHHHHHHHHHH
T ss_pred             HhHH-HHHHHHHH--hcC---CCcHHHHHHHHHHHHHHH
Confidence            3211 12222211  110   123578888887776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	330
d1eyha_	144	a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T	3e-51
d1hx8a2	140	a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso	8e-30
d1hf8a2	131	a.118.9.3 (A:19-149) Clathrin assembly lymphoid my	4e-28

>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  164 bits (416), Expect = 3e-51
 Identities = 70/138 (50%), Positives = 98/138 (71%)

Query: 26  IEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALT 85
            E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +IWKR+ND GKNWRHVYKA+T
Sbjct: 6   AEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMT 65

Query: 86  VLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKER 145
           ++EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG NVR+K++ LVAL+ D++R
Sbjct: 66  LMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDR 125

Query: 146 IIEVRQKAAANRDKFRNT 163
           + E R  A   ++K   T
Sbjct: 126 LREERAHALKTKEKLAQT 143

>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: Phosphoinositide-binding clathrin adaptor, N-terminal domain
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  108 bits (272), Expect = 8e-30
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 20/141 (14%)

Query: 25  GIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEY-QMIIGVIWKRINDTGKNWRHVYKA 83
           G+ + V  AT+ E  GP    L  +       +     +  ++ +R  +   NW  VYK+
Sbjct: 2   GLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQN--ANWVVVYKS 59

Query: 84  LTVLEYLVAHGSERVIDDIREHS--YQISTLSDFQYI---------DSSGRDQGSNVRKK 132
           L    +L+A+G+ER +  +   +  + +S+  D   +            G D    +R+ 
Sbjct: 60  LITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRY 119

Query: 133 SQSLVALVNDKERIIEVRQKA 153
           ++ L       E+ +  R  A
Sbjct: 120 AKYL------NEKSLSYRAMA 134

>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: Phosphoinositide-binding clathrin adaptor, N-terminal domain
domain: Clathrin assembly lymphoid myeloid leukaemia protein, Calm
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  103 bits (259), Expect = 4e-28
 Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 26  IEQKVLDATSNEPWGPHGTLLADIAQATRNYHEY-QMIIGVIWKRINDTGKNWRHVYKAL 84
           + + V  AT++E  GP    L  + Q T   +     +   +++R  ++  +W  V+K+L
Sbjct: 4   VSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS--SWVVVFKSL 61

Query: 85  TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKE 144
               +L+ +G+ER I  +   +   +  +        G D  + +R+ S+ L       E
Sbjct: 62  ITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYL------NE 115

Query: 145 RIIEVRQ 151
           + +  RQ
Sbjct: 116 KAVSYRQ 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1eyha_	144	Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1hx8a2	140	AP180 (Lap) {Fruit fly (Drosophila melanogaster) [	99.88
d1hf8a2	131	Clathrin assembly lymphoid myeloid leukaemia prote	99.87
d1elka_	153	Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	97.81
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	97.73
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	97.63
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	97.52

>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-45  Score=314.11  Aligned_cols=143  Identities=49%  Similarity=0.867  Sum_probs=140.4

Q ss_pred             cCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 020164           21 LKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID  100 (330)
Q Consensus        21 ~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~  100 (330)
                      .|||++|++|++|||+|+|||++++|.+|+++||++..|..||.+||+||.+++++||+|||||+||+|||+||+++||.
T Consensus         1 ~n~s~~e~~v~~ATs~d~~~p~~k~~~~I~~~t~~~~~~~~i~~~L~kRl~~~~k~Wrvv~K~L~ll~~Ll~~G~~~~v~   80 (144)
T d1eyha_           1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ   80 (144)
T ss_dssp             CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhcc
Q 020164          101 DIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT  163 (330)
Q Consensus       101 e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky~g~  163 (330)
                      +++.|.+.|+.|..|+|+|++|+|+|.+||++|+.|++||+|+++|++||.+|+++|+||.++
T Consensus        81 ~~~~~~~~i~~l~~f~~~d~~g~d~g~~VR~kA~~l~~Ll~d~~~L~~eR~~a~~~r~k~~~~  143 (144)
T d1eyha_          81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQT  143 (144)
T ss_dssp             HHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhHHHHHhhhcCcccCccccchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999875

>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: Phosphoinositide-binding clathrin adaptor, N-terminal domain
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=5.9e-23  Score=173.01  Aligned_cols=120  Identities=23%  Similarity=0.378  Sum_probs=101.1

Q ss_pred             hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020164           25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR  103 (330)
Q Consensus        25 ~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~-~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r  103 (330)
                      .+|+.|++|||+|+|||..++|.+|+.+|+++. .+..||.+||+||.+  ++|++++|||+||+|||+||+++|+.+++
T Consensus         2 ~l~~aV~kAT~~~~~~Pk~K~v~~i~~~t~~~~~~~~~i~~~L~~Rl~~--~~w~v~~K~L~llh~ll~~G~~~~~~~~~   79 (140)
T d1hx8a2           2 GLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQN--ANWVVVYKSLITTHHLMAYGNERFMQYLA   79 (140)
T ss_dssp             HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             cHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            368999999999999999999999999999986 589999999999964  68999999999999999999999999998


Q ss_pred             hhhhhh--hccccceeeCC---------CCCccchhHHHHHHHHHHhhcCHHHHHHHHHH
Q 020164          104 EHSYQI--STLSDFQYIDS---------SGRDQGSNVRKKSQSLVALVNDKERIIEVRQK  152 (330)
Q Consensus       104 ~h~~~I--~~L~~Fqy~D~---------~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~k  152 (330)
                      .+..+|  +.++++++...         .+.|++..||..|+-|      +++|+++|..
T Consensus        80 ~~~~~~~l~~f~d~~~~~~~~~~~~~~~~~~~~~~~Ir~Ya~yL------~eRl~~~R~~  133 (140)
T d1hx8a2          80 SSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYL------NEKSLSYRAM  133 (140)
T ss_dssp             HTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred             hCCCcccccccccccccccccccccccccccchhHHHHHHHHHH------HHHHHHHHHh
Confidence            887665  33444433322         2358999999999888      6788888865

>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: Phosphoinositide-binding clathrin adaptor, N-terminal domain
domain: Clathrin assembly lymphoid myeloid leukaemia protein, Calm
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.9e-22  Score=167.76  Aligned_cols=120  Identities=23%  Similarity=0.355  Sum_probs=104.6

Q ss_pred             chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhh-HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164           24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHE-YQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI  102 (330)
Q Consensus        24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~-y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~  102 (330)
                      |++|+.|.+|||+++|||..+.|.+|++.|++... +..||..||+||.++  +|++++|||+||++||+||++.|+.++
T Consensus         2 s~l~~~V~kATs~~~~~P~~k~v~~i~~~t~~~~~~~~~~~~~L~~Rl~~~--~w~v~~K~L~llh~ll~~G~~~~~~~~   79 (131)
T d1hf8a2           2 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS--SWVVVFKSLITTHHLMVYGNERFIQYL   79 (131)
T ss_dssp             HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHTCTTSCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             cHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCcccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            57899999999999999999999999999999865 899999999999875  799999999999999999999999999


Q ss_pred             HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHH
Q 020164          103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQ  151 (330)
Q Consensus       103 r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~  151 (330)
                      +.+..+|..+..+.+.++.+.|+|..||..|+-|      +++|+..|.
T Consensus        80 ~~~~~~l~l~~~~~~~~~~~~~~~~~Ir~Ya~yL------~er~~~~r~  122 (131)
T d1hf8a2          80 ASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYL------NEKAVSYRQ  122 (131)
T ss_dssp             HHSSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred             HhCcchhhhhhccccCCCCcCcccHHHHHHHHHH------HHHHHHHHH
Confidence            9988888644444555567789999999999977      456666553

>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Tom1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=4e-05  Score=63.99  Aligned_cols=114  Identities=21%  Similarity=0.169  Sum_probs=82.5

Q ss_pred             chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164           24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI  102 (330)
Q Consensus        24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~  102 (330)
                      |+++.+|..||+...-.|.-..+-+|++.--. ...=...+..|.|||.. .+++..++-||.|||.|++|+...|-.++
T Consensus        11 t~~~~~vekAT~~~l~~~dw~~il~icD~In~~~~~~k~a~ral~krL~~-~~n~~v~l~aL~LLe~~vkNCG~~fh~ev   89 (153)
T d1elka_          11 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVG-NKNFHEVMLALTVLETCVKNCGHRFHVLV   89 (153)
T ss_dssp             SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ChHHHHHHHHcCCCCCcccHHHHHHHHHHHhCCCcCHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            78999999999977667777777778776422 33457899999999954 45788899999999999999998888877


Q ss_pred             HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       103 r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      -+--++-+.|...-.   .+...-..|++|+..|+....
T Consensus        90 as~~Fl~~ll~~~~~---~~~~~~~~Vk~kil~li~~W~  125 (153)
T d1elka_          90 ASQDFVESVLVRTIL---PKNNPPTIVHDKVLNLIQSWA  125 (153)
T ss_dssp             TSHHHHHHHTHHHHS---TTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhc---cCCCCcHHHHHHHHHHHHHHH
Confidence            554332222222111   122333469999999988774

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.00011  Score=60.76  Aligned_cols=115  Identities=15%  Similarity=0.168  Sum_probs=81.8

Q ss_pred             CCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 020164           22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID  100 (330)
Q Consensus        22 n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~  100 (330)
                      .-++.|.+|..||+...-.|.-..+-+|+..-.. ...=...+..|.|||...  +-..++-||.|||.|++||...|-.
T Consensus         5 ~~~~~e~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~r~l~krl~~~--~~~~~l~aL~LLe~~vkNCG~~f~~   82 (145)
T d1ujka_           5 EPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSP--QEWEAIQALTVLETCMKSCGKRFHD   82 (145)
T ss_dssp             STTSHHHHHHHHTCTTCSSCCHHHHHHHHHHHTSSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             CcchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            4478899999999977777777899999988644 334578999999999663  4567778999999999999988887


Q ss_pred             HHHhh--hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          101 DIREH--SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       101 e~r~h--~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      ++-+-  +..|..|-.=++   .+...-..|++|+-.++..-.
T Consensus        83 evas~~Fl~~L~kli~~k~---~~~~~~~~Vk~kil~li~~W~  122 (145)
T d1ujka_          83 EVGKFRFLNELIKVVSPKY---LGSRTSEKVKNKILELLYSWT  122 (145)
T ss_dssp             HHTSHHHHHHHHHHHCTTT---TGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhhcc---CCCCCcHHHHHHHHHHHHHHH
Confidence            77432  222222211000   123344589998888887643

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=0.00021  Score=58.83  Aligned_cols=110  Identities=14%  Similarity=0.117  Sum_probs=80.2

Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020164           26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE  104 (330)
Q Consensus        26 ~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~  104 (330)
                      .|.+|..||+...--|.-..+-+|+..-.. ...-...+..|.|||...  +-...+-||.|||.|++|+...|..++-+
T Consensus         2 le~liekAT~~~~~~~dw~~il~icD~I~~~~~~~k~a~ral~krl~~~--n~~~~l~aL~LLe~~vkNcG~~fh~evas   79 (143)
T d1mhqa_           2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSP--QEKEALYALTVLEMCMNHCGEKFHSEVAK   79 (143)
T ss_dssp             HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred             HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence            588999999977777777888888887533 334568999999999664  56788999999999999999999888843


Q ss_pred             h--hhhhhccccceeeCCCCCccchhHHHHHHHHHHhh
Q 020164          105 H--SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALV  140 (330)
Q Consensus       105 h--~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL  140 (330)
                      -  +..+..|-...+   .+.-.-..|++|+-.++.-.
T Consensus        80 k~Fl~~l~~li~~k~---~~~~~~~~Vk~kil~li~~W  114 (143)
T d1mhqa_          80 FRFLNELIKVLSPKY---LGSWATGKVKGRVIEILFSW  114 (143)
T ss_dssp             HHHHHHHHHTTCCST---TSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccc---CCCCCCHHHHHHHHHHHHHH
Confidence            3  333333322222   23345567999988887644

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.63  E-value=0.00021  Score=58.68  Aligned_cols=110  Identities=22%  Similarity=0.204  Sum_probs=80.9

Q ss_pred             chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164           24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI  102 (330)
Q Consensus        24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~  102 (330)
                      |+.|..|..|||...--|.-..+-+|+..-.. ...=...+..|.|||..  ++-...+-||.|||.|++|+...|-.++
T Consensus         4 s~~~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k~a~ral~krl~~--~n~~v~l~aL~LLd~~vkNcG~~f~~~i   81 (145)
T d1dvpa1           4 SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHEEV   81 (145)
T ss_dssp             SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             chHHHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            78999999999988888888999999888643 33467899999999975  3677889999999999999988777777


Q ss_pred             HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164          103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN  141 (330)
Q Consensus       103 r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~  141 (330)
                      -+- ..+..|...  .+.   ..-..|++|+-+++....
T Consensus        82 ~s~-~fl~~l~~l--~~~---~~~~~Vk~kil~li~~W~  114 (145)
T d1dvpa1          82 FTK-ENCEMFSSF--LES---TPHENVRQKMLELVQTWA  114 (145)
T ss_dssp             SSH-HHHHHHHHH--HHH---CSCHHHHHHHHHHHHHHH
T ss_pred             hhH-HHHHHHHHH--hcC---CCCHHHHHHHHHHHHHHH
Confidence            332 112222222  111   113479999988887643

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00051  Score=56.98  Aligned_cols=112  Identities=15%  Similarity=0.181  Sum_probs=75.8

Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020164           26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE  104 (330)
Q Consensus        26 ~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~  104 (330)
                      .|.+|..||+...--|.-..+-+|+..--. ...-...+..|.|||...  +-..++-||.|||.|++|+...|-.++-+
T Consensus         3 le~~i~kAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~--~~~~~l~aL~LLe~~vkNCG~~F~~evas   80 (151)
T d1juqa_           3 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSP--QEWEALQALTVLEACMKNCGRRFHNEVGK   80 (151)
T ss_dssp             HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHHHHHHHHTS
T ss_pred             HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccHHHHHHHhh
Confidence            588999999965545555666667665422 334578999999999753  45578889999999999998888777743


Q ss_pred             h--hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcC
Q 020164          105 H--SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVND  142 (330)
Q Consensus       105 h--~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D  142 (330)
                      -  +..|..|-.-.+.   +...-..|++|+-.++....+
T Consensus        81 k~Fl~~l~kli~~k~~---~~~~~~~Vk~kil~ll~~Wa~  117 (151)
T d1juqa_          81 FRFLNELIKVVSPKYL---GDRVSEKVKTKVIELLYSWTM  117 (151)
T ss_dssp             HHHHHHHHHHHCCCCC---CTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCC---CCcccHHHHHHHHHHHHHHHH
Confidence            2  2223222221221   223446799998888887653