Citrus Sinensis ID: 020231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MATEDQDSGFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNVESDEIIARTLQEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYSSGPSSSCSSPGDGEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDRPLGESKRKKKWWNFGN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEccccccccccEEEEEccccccccEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccEEEEccccccccccccccccccEEEEcccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHcccHcccccccccccccccccccccccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHcccEEEEEccccccEEEEcccccccccEEEEEEEccccEccEEccccccccccccccEEEEccc
Coil and Loop (DISEMBL)
matedqdsgfvqwglrffdydpylhsgyhddiiqhdgndiyhgrsfrnnddddaessnnvesDEIIARTLQEEFSQLAIEEASQYSHAQDEHTMletsqdhdwnssstrnyssgpssscsspgdgeedpysleitdecllddEVGKRLNQMVAIrhvpringeipsvdeatsDHERLLNRLQLYGFVehkvqgdgncqfralsdqlyhtpehhKSVRQQIVTQLKshpemyegyvpmEYSEYLKKMsmsgewgdHVTLQAAADLFHVKIVVITSfkdtcyieiLPNVEKIKRAICLSFWAEVHynsifsqddrplgeskrkkkwwnfgn
Flexible Loop (DISEMBL)
matedqdsgfvQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNVESDEIIARTLQEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYSSGPSSSCSSPGDGEEDPYSLEITDECLLDDEVGKRLNQMVAirhvpringeipsvdEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNsifsqddrplgeskrkkkwwnfgn
Low Complexity Region (SEG)
MATEDQDSGFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRnnddddaessnnvesdeIIARTLQEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYssgpssscsspgDGEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDRPLGESKRKKKWWNFGN
Disordered region (IsUnstruct)
********GFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHG****************************************************************************************LEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPSV*****DHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIFS********************
Disordered Region (DISOPRED)
***EDQDSGFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNVESDEIIARTLQEEF*****************************************************************************************************RLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEIL***EKIKRAICLSFWAEVHYNSIF****************W*FG*
Disordered Region (DISEMBL)
********GFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNND***********SDEIIARTLQEEFSQLAIEE***********************************************PYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDRPLGESKRKKKWWNFGN
Disordered Region (DISPRO)
MATEDQDSGFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNVESDEIIARTLQEEFSQLAIEEASQ**************************************************TDECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDRPLGESKRKKKWWNFGN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATEDQDSGFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNVESDEIIARTLQEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYSSGPSSSCSSPGDGEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDRPLGESKRKKKWWNFGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q54P70	766	OTU domain-containing pro	yes	no	0.559	0.240	0.353	2e-18
P22856	867	Putative ubiquitin thioes	N/A	no	0.428	0.162	0.294	5e-11
Q96G74	571	OTU domain-containing pro	yes	no	0.401	0.231	0.25	8e-10
Q08BW0	560	OTU domain-containing pro	yes	no	0.395	0.232	0.270	6e-09
Q7ZX21	513	OTU domain-containing pro	N/A	no	0.395	0.253	0.248	1e-08
B2RRE7	1107	OTU domain-containing pro	yes	no	0.398	0.118	0.25	2e-08
Q2YDU3	566	OTU domain-containing pro	no	no	0.376	0.219	0.251	4e-08
Q3U2S4	566	OTU domain-containing pro	no	no	0.376	0.219	0.251	4e-08
Q6GL44	518	OTU domain-containing pro	yes	no	0.376	0.239	0.251	4e-08
Q640H3	518	OTU domain-containing pro	N/A	no	0.376	0.239	0.251	5e-08

>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 14/198 (7%)

Query: 123 GDGEEDPYSLEITDECLLDDEVGKRLNQMVAI--RHVPRINGEIPSVDEATSDHERLLNR 180
           G   +D YS EI    LL+  V K +N   ++   +V      +P   E     +RL  R
Sbjct: 566 GGHVQDQYS-EIKTNLLLEGLVLKNMNHDASLISSNVLLNLHPLPQSKEVQIAQQRLNER 624

Query: 181 LQLYGFVEHK-VQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHP--EMYEGYVPM 237
           L+LY     K + GDGNCQ  ALSDQLY    H + VR+ IV  L+ +   ++  G    
Sbjct: 625 LELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVDWLRKNKDFQLPNGATIC 684

Query: 238 EYS------EYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSF--KDTCYIEILPNVEK 289
           ++       +Y   MS +G WGDH+TL AAA+ F  KI +I+S   +   +IEI+P+   
Sbjct: 685 QFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEIIPSKIL 744

Query: 290 IKRAICLSFWAEVHYNSI 307
             + + LS +AE HY S+
Sbjct: 745 NDKVLLLSHYAEFHYGSL 762

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus GN=L96 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 22/163 (13%)

Query: 163 EIPSVDEATSDHE-RLLNRLQLYGFVEHKVQGDGNCQFRALSDQLY---HTPEHHKSVRQ 218
           E+P      +D +  +L R + Y  +   V+GDGNC FRA+   L    +    H+ +R 
Sbjct: 584 ELPEYKGGNADRDLEILARRRGYKVIP--VKGDGNCLFRAVGKSLRLNQNIKYSHEDLRA 641

Query: 219 QIVTQLKSHPEMYEGYV----------PMEYSE----YLKKMSMSGEWGDHVTLQAAADL 264
           Q+VT L SH E  E Y+          P EY++    Y+K +S  G WGD + L+  +++
Sbjct: 642 QVVTYLTSHKEFLEPYLEYVTESGDTTPQEYAKNVERYIKNISKPGTWGDFICLRVLSEI 701

Query: 265 FHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSI 307
             VK  ++    +T   +++ N +  K  I L F  + HY ++
Sbjct: 702 LKVKFNLL--ILNTRNFQVISNNDTFKPLIPLGFIDDYHYTAL 742

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (By similarity). May be involved in TIV genomic DNA packaging in a manner related to the Gag polyproteins of the mammalian viruses.

Tipula (taxid: 41043)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 72/136 (52%), Gaps = 4/136 (2%)

Query: 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLK 244
           GF+  +++ DG C FRA++DQ+Y   + H+ VR+  +  L  + + +  YV  +++ Y+ 
Sbjct: 212 GFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 271

Query: 245 KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKR----AICLSFWA 300
           +   +   G+H+ +QA A++++  + V      T  +E +     I +     I +S+  
Sbjct: 272 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHR 331

Query: 301 EVHYNSIFSQDDRPLG 316
            +HYNS+ + +   +G
Sbjct: 332 NIHYNSVVNPNKATIG 347

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2 SV=1

 Score = 62.0 bits (149), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLK 244
           GFV  K++ DG C FRA++DQ+Y   + H+ VR+  +  L  + + +  YV  +++ Y+ 
Sbjct: 210 GFVIKKMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 269

Query: 245 KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNV-EKIKRAICLSFWAEVH 303
           +   +   G+H+ +QA A++++  + V  S   T  I     + +     I +S+   +H
Sbjct: 270 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQS--GTEPINTFHGIHQNNDEPIRVSYHRNIH 327

Query: 304 YNSIFSQDDRPLG 316
           YNS+ + +   +G
Sbjct: 328 YNSVVNPNKATIG 340

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 72/133 (54%), Gaps = 3/133 (2%)

Query: 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLK 244
           GF+  +++ DG C FRA++DQ+Y   + H+ VR+  +  L  + + +  YV  +++ Y+ 
Sbjct: 165 GFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 224

Query: 245 KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIK-RAICLSFWAEVH 303
           +   +   G+H+ +QA A++++  + V     +   I     ++K +   I +S+   +H
Sbjct: 225 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEP--INTFHGIQKNEDEPIRVSYHRNIH 282

Query: 304 YNSIFSQDDRPLG 316
           YNS+ + +   +G
Sbjct: 283 YNSVVNPNKATIG 295

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 21/152 (13%)

Query: 181 LQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYS 240
           L+  G     V  DG+C FRA+++Q+ H+   H  VR   +  L+ + E +E ++   + 
Sbjct: 29  LRKLGLYRKLVAKDGSCLFRAVAEQVLHSQSRHVEVRMACIRYLRENREKFEAFIEGSFE 88

Query: 241 EYLKKMSMSGEWGDHVTLQAAADLFHVKIV--------------------VITSFKDTCY 280
           EYLK++    EW   V + A + ++    V                    V+  F +  +
Sbjct: 89  EYLKRLENPQEWVGQVEISALSLMYRKDFVIYQEPNVSPSHVTENNFPEKVLLCFSNGNH 148

Query: 281 IEIL-PNVEKIKRAICLSFWAEVHYNSIFSQD 311
            +I+ P   K   A+C S   E+ Y  +F  D
Sbjct: 149 YDIVYPITYKDSSAMCQSLLYELLYEKVFKTD 180

Mus musculus (taxid: 10090)

>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 71/139 (51%), Gaps = 15/139 (10%)

Query: 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLK 244
           GF+  +++ DG C FRA++DQ+Y   + H+ VR+  +  L  + + +  YV  +++ Y+ 
Sbjct: 212 GFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 271

Query: 245 KMSMSGEWGDHVTLQAAADLFHVKIVV-------ITSFKDTCYIEILPNVEKIKRAICLS 297
           +   +   G+H+ +QA A++++  + V       I +F      E  P        I +S
Sbjct: 272 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEP--------IRVS 323

Query: 298 FWAEVHYNSIFSQDDRPLG 316
           +   +HYNS+ + +   +G
Sbjct: 324 YHRNIHYNSVVNPNKATIG 342

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 71/139 (51%), Gaps = 15/139 (10%)

Query: 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLK 244
           GF+  +++ DG C FRA++DQ+Y   + H+ VR+  +  L  + + +  YV  +++ Y+ 
Sbjct: 212 GFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 271

Query: 245 KMSMSGEWGDHVTLQAAADLFHVKIVV-------ITSFKDTCYIEILPNVEKIKRAICLS 297
           +   +   G+H+ +QA A++++  + V       I +F      E  P        I +S
Sbjct: 272 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEP--------IRVS 323

Query: 298 FWAEVHYNSIFSQDDRPLG 316
           +   +HYNS+ + +   +G
Sbjct: 324 YHRNIHYNSVVNPNKATIG 342

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 71/139 (51%), Gaps = 15/139 (10%)

Query: 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLK 244
           GF+  +++ DG C FRA++DQ+Y   + H+ VR+  +  L  + + +  YV  +++ Y+ 
Sbjct: 170 GFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 229

Query: 245 KMSMSGEWGDHVTLQAAADLFHVKIVV-------ITSFKDTCYIEILPNVEKIKRAICLS 297
           +   +   G+H+ +QA A++++  + V       I +F      E  P        I +S
Sbjct: 230 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEP--------IRVS 281

Query: 298 FWAEVHYNSIFSQDDRPLG 316
           +   +HYNS+ + +   +G
Sbjct: 282 YHRNIHYNSVVNPNKATIG 300

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 71/139 (51%), Gaps = 15/139 (10%)

Query: 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLK 244
           GF+  +++ DG C FRA++DQ+Y   + H+ VR+  +  L  + + +  YV  +++ Y+ 
Sbjct: 170 GFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 229

Query: 245 KMSMSGEWGDHVTLQAAADLFHVKIVV-------ITSFKDTCYIEILPNVEKIKRAICLS 297
           +   +   G+H+ +QA A++++  + V       I +F      E  P        I +S
Sbjct: 230 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEP--------IRVS 281

Query: 298 FWAEVHYNSIFSQDDRPLG 316
           +   +HYNS+ + +   +G
Sbjct: 282 YHRNIHYNSVVNPNKATIG 300

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
224119436	338	predicted protein [Populus trichocarpa]	0.978	0.952	0.653	1e-116
224068753	342	predicted protein [Populus trichocarpa]	0.984	0.947	0.622	1e-111
356548331	337	PREDICTED: uncharacterized protein LOC10	0.957	0.934	0.612	1e-109
356533225	336	PREDICTED: uncharacterized protein LOC10	0.951	0.931	0.617	1e-107
357440359	338	Cysteine-type peptidase [Medicago trunca	0.957	0.931	0.603	1e-106
255556956	341	cysteine-type peptidase, putative [Ricin	0.951	0.917	0.628	1e-105
225435383	353	PREDICTED: uncharacterized protein LOC10	0.987	0.920	0.582	1e-105
297746292	354	unnamed protein product [Vitis vinifera]	0.987	0.918	0.582	1e-105
297741626	338	unnamed protein product [Vitis vinifera]	0.972	0.946	0.611	1e-104
359481389	341	PREDICTED: OTU domain-containing protein	0.972	0.938	0.609	1e-103

>gi|224119436|ref|XP_002331229.1| predicted protein [Populus trichocarpa] gi|222873415|gb|EEF10546.1| predicted protein [Populus trichocarpa]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/343 (65%), Positives = 259/343 (75%), Gaps = 21/343 (6%)

Query: 1   MATEDQDSGFVQWGLRFFDYDPYLHSGYHDD-IIQHDGNDIYHGRSFRNNDDDDAESSNN 59
           M   +QDS  +QWGLR  D DP  +SGY+ D IIQ D  D YHG   R  D  D    ++
Sbjct: 1   MVIYEQDSDVIQWGLRLLDGDPPYYSGYYGDAIIQSD--DGYHGHYVR--DHYDISDCSH 56

Query: 60  VESDEIIARTLQEEFSQLAIEEASQYSHAQDEHTMLETSQD-HDWNSSSTRNYSSG---- 114
           VESDE+IARTLQEEFSQLA+ EA++YSH  +EH  L TS D H W  + TRNY S     
Sbjct: 57  VESDEMIARTLQEEFSQLAVTEATEYSHGGEEH--LHTSVDEHPWQCTPTRNYCSDNECS 114

Query: 115 --------PSSSCSSPGDGEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPS 166
                   PSSSCSSP +GEE  YS E  D+  LDDEVGKRLNQ++ IRHVPRINGEIPS
Sbjct: 115 HEESDDAVPSSSCSSPANGEEYSYSPESNDDYELDDEVGKRLNQLIPIRHVPRINGEIPS 174

Query: 167 VDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKS 226
           +DEATSDHERLLNRLQL+GF E KVQGDGNCQFRALSDQ+Y+TP+ HK+VR+Q+V QL S
Sbjct: 175 IDEATSDHERLLNRLQLFGFDELKVQGDGNCQFRALSDQIYNTPDRHKTVRRQVVYQLNS 234

Query: 227 HPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPN 286
           HPE+YEGYVPMEY EYL+KMS SGEWGDHVTLQAAAD + VKI+V+TSFKDTCYIEILP 
Sbjct: 235 HPEIYEGYVPMEYGEYLRKMSRSGEWGDHVTLQAAADSYGVKILVMTSFKDTCYIEILPV 294

Query: 287 VEKIKRAICLSFWAEVHYNSIFSQDDRPLGESKRKKKWWNFGN 329
            +K K  I LSFWAEVHYNSI+ Q D    E ++KK+WW+FGN
Sbjct: 295 SQKPKGVIFLSFWAEVHYNSIYFQGDTS-SEFRKKKRWWSFGN 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068753|ref|XP_002326191.1| predicted protein [Populus trichocarpa] gi|222833384|gb|EEE71861.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/347 (62%), Positives = 257/347 (74%), Gaps = 23/347 (6%)

Query: 1   MATEDQDSGFVQWGLRFFDYDPYLHSGYHDD-IIQHDGNDIYHGRSFRNNDDDDAESSNN 59
           M   +Q+S  +QWGLR  D DP  +SGY+ + I+Q D  D YHG   R  D  D    ++
Sbjct: 1   MVIYEQESDVIQWGLRLLDGDPPFYSGYYGEAIVQSD--DGYHGHYVR--DHYDITDCSH 56

Query: 60  VESDEIIARTLQEEFSQLAIEEASQYSHAQDEHTM-------------LETSQD-HDWNS 105
           VE+DE+IARTLQEEFSQLA+ E + YSH  +E ++             L+TS D HDW+ 
Sbjct: 57  VENDEMIARTLQEEFSQLAVTEENGYSHGGEELSVTEENVYSHGGEEHLQTSVDEHDWHY 116

Query: 106 SSTRNYSSG---PSSSCSSPGDGEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRING 162
           +   +  S    PSSSCSSP +GEE  YS E TDE  LDDEVGKRLNQ++ IRHVPRING
Sbjct: 117 NECSHEESDDAVPSSSCSSPANGEEYSYSPEFTDEDGLDDEVGKRLNQLIPIRHVPRING 176

Query: 163 EIPSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVT 222
           EIPS+DEATSDHERLLNRLQL+GF E KV GDGNCQFRALSDQ+Y+TP+ HK VR+Q+V 
Sbjct: 177 EIPSIDEATSDHERLLNRLQLFGFEELKVPGDGNCQFRALSDQIYNTPDRHKIVRRQVVY 236

Query: 223 QLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIE 282
           QLKSHPE+YEGYVPMEY +YL+KMS SGEWGDHVTLQA AD + VKI+V+TSFKDTCYIE
Sbjct: 237 QLKSHPEIYEGYVPMEYGDYLRKMSKSGEWGDHVTLQAVADAYGVKILVMTSFKDTCYIE 296

Query: 283 ILPNVEKIKRAICLSFWAEVHYNSIFSQDDRPLGESKRKKKWWNFGN 329
           ILP  +K K  I LSFWAEVHYNSI+ Q D    E ++KK+WWNFGN
Sbjct: 297 ILPVSQKPKGVIFLSFWAEVHYNSIYFQGDTS-SEFRKKKRWWNFGN 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548331|ref|XP_003542556.1| PREDICTED: uncharacterized protein LOC100811851 [Glycine max]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/330 (61%), Positives = 244/330 (73%), Gaps = 15/330 (4%)

Query: 11  VQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNVESDEIIARTL 70
           VQWG+  FD DP    GY+ DIIQHD  D+Y+G  + ++ D +   SN +++DEIIAR L
Sbjct: 10  VQWGINLFDSDPAYSPGYYSDIIQHDTGDVYNGHYYHSHYDTE---SNQIQNDEIIARAL 66

Query: 71  QEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYSSGPSSSCSSPGD------ 124
           QEEFS+L I E S YS   DE     +    DWN++S  NY SG   + +  GD      
Sbjct: 67  QEEFSRLDIAECSGYSQT-DEEQFHASEPTCDWNNTSMMNYCSGHDYAYNGVGDIEPSSS 125

Query: 125 -----GEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERLLN 179
                 E +  SLE+TD   LD E+G+RL+QMV I HVP+INGEIPS+DEATSDH+RLL+
Sbjct: 126 SCCSPCEVEESSLELTDNYPLDGEIGRRLSQMVPIPHVPKINGEIPSIDEATSDHQRLLD 185

Query: 180 RLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEY 239
           RLQLY FVEH VQGDGNCQFRALSDQLY+TP+HHK VR+Q+V +LKSHPE+YEGYVPMEY
Sbjct: 186 RLQLYDFVEHMVQGDGNCQFRALSDQLYNTPDHHKYVRRQVVNKLKSHPEIYEGYVPMEY 245

Query: 240 SEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFW 299
           +EYL+KMS SGEWGDHVTLQAAAD + V+I V+TSFKDTC IEILP+ EK K  I LSFW
Sbjct: 246 AEYLEKMSKSGEWGDHVTLQAAADSYGVRIFVMTSFKDTCCIEILPHFEKPKGVIFLSFW 305

Query: 300 AEVHYNSIFSQDDRPLGESKRKKKWWNFGN 329
           AEVHYNSI+ Q D P  ES++KK+WWNFG 
Sbjct: 306 AEVHYNSIYPQGDIPSSESRKKKRWWNFGT 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533225|ref|XP_003535167.1| PREDICTED: uncharacterized protein LOC100814098 [Glycine max]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/329 (61%), Positives = 243/329 (73%), Gaps = 16/329 (4%)

Query: 11  VQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNVESDEIIARTL 70
           VQWG+  F  DP    GY+ DIIQHD  D+Y+G  + N+ D +   SN +++DEIIAR L
Sbjct: 10  VQWGINLFS-DPAYSPGYYSDIIQHDTGDVYNGHYYHNHYDTE---SNQIQNDEIIARAL 65

Query: 71  QEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYSSGPSSSCSSPGD------ 124
           QEEFS+L I E S YS   DE     +   +DWN++S  NY SG   + +  GD      
Sbjct: 66  QEEFSRLDIAECSGYSQT-DEEQFHASEPTYDWNNTSMMNYCSGHDYAYNGVGDIEPSSS 124

Query: 125 -----GEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERLLN 179
                 E +  SLE+TD   LDDE+G+RL+QMV   HVP+INGEIPS+DEA+SDH+RLL+
Sbjct: 125 SCCSPCEPEESSLELTDNYPLDDEIGRRLSQMVPTPHVPKINGEIPSIDEASSDHQRLLD 184

Query: 180 RLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEY 239
           RLQLY FVEH VQGDGNCQFRALSDQLY+TP+HHK VR+Q+V QLKSHPE+YEGYVPMEY
Sbjct: 185 RLQLYDFVEHMVQGDGNCQFRALSDQLYNTPDHHKYVRRQVVNQLKSHPEIYEGYVPMEY 244

Query: 240 SEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFW 299
            EYL+KMS SGEWGDHVTLQAAAD + V+I VITSFKDTC IEILP+ EK K  I LSFW
Sbjct: 245 DEYLEKMSKSGEWGDHVTLQAAADSYGVRIFVITSFKDTCCIEILPHFEKPKGVIFLSFW 304

Query: 300 AEVHYNSIFSQDDRPLGESKRKKKWWNFG 328
           AEVHYNSI+ Q D P  ES++KKKWW+FG
Sbjct: 305 AEVHYNSIYPQGDIPSSESRKKKKWWSFG 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440359|ref|XP_003590457.1| Cysteine-type peptidase [Medicago truncatula] gi|355479505|gb|AES60708.1| Cysteine-type peptidase [Medicago truncatula]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/333 (60%), Positives = 240/333 (72%), Gaps = 18/333 (5%)

Query: 8   SGFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNVESDEIIA 67
           S  VQWG+  FD DP    GY+ DI QHD  D+Y+   F ++ D     SN VE+DEIIA
Sbjct: 7   SDVVQWGMNLFDVDPRYSPGYYGDITQHDTGDVYNEHYFHSHYD--TSESNQVENDEIIA 64

Query: 68  RTLQEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYSSG------------- 114
           RTLQEEFSQL I E S YS A  EH     S  +DW+++   NY SG             
Sbjct: 65  RTLQEEFSQLEIAEHSSYSQADQEHFHTSESS-YDWHNTPMMNYCSGGHDYAHEGVCDTE 123

Query: 115 PSSSCSSPGDGEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDH 174
            SSSC SP + E    S E+ D    DD++G+RLN++  I H+P+INGEIPS+DEATSDH
Sbjct: 124 TSSSCCSPSEVE--GVSSELLDNYPFDDDIGRRLNEITPIPHIPKINGEIPSIDEATSDH 181

Query: 175 ERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGY 234
           ERLL RLQLY FVEHKVQGDGNCQFRALSDQLY+TP+HHK VR+++V QLKSHP++YEGY
Sbjct: 182 ERLLERLQLYDFVEHKVQGDGNCQFRALSDQLYNTPDHHKFVRRKVVNQLKSHPDIYEGY 241

Query: 235 VPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAI 294
           VPMEY+EYL KMS SGEWGDHVTLQAAAD + V+I V+TSFKDTC IEILP+ EK K  I
Sbjct: 242 VPMEYNEYLDKMSRSGEWGDHVTLQAAADSYGVRIFVMTSFKDTCCIEILPSFEKPKGVI 301

Query: 295 CLSFWAEVHYNSIFSQDDRPLGESKRKKKWWNF 327
            +SFWAEVHYNSI+ Q D    ES++KK+WW+F
Sbjct: 302 FISFWAEVHYNSIYPQGDITSSESRKKKRWWSF 334

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556956|ref|XP_002519511.1| cysteine-type peptidase, putative [Ricinus communis] gi|223541374|gb|EEF42925.1| cysteine-type peptidase, putative [Ricinus communis]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/331 (62%), Positives = 243/331 (73%), Gaps = 18/331 (5%)

Query: 1   MATEDQDSGFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNV 60
           MA  +QDS  VQWGLR  D DP  +SGY+  ++Q++  D YHG+  R  D  D     +V
Sbjct: 1   MAMYEQDSDVVQWGLRLLDGDPPFYSGYYCGVVQNE--DSYHGQYIR--DHYDISDCTHV 56

Query: 61  ESDEIIARTLQEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYSSG---PSS 117
           +SDEIIARTLQEEFSQLA+ EAS+YS A+ E  M E+ Q HDW+     +  S    PSS
Sbjct: 57  DSDEIIARTLQEEFSQLAVAEASRYSPAR-EDNMQESIQSHDWHYHEHSHEDSDDMVPSS 115

Query: 118 SCSSPGDGEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERL 177
           SCSSPG+ +E  YS E  DE  LDDEVG+RLNQMV I HVPRINGEIPS+DEA+SDHERL
Sbjct: 116 SCSSPGNEDEYSYSPEFADEYALDDEVGRRLNQMVPIPHVPRINGEIPSIDEASSDHERL 175

Query: 178 LNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPM 237
           LNRLQL+ F E KVQGDGNCQFRALSDQLY TP+ HK VR+Q+V QL+SHPE+YEGYVPM
Sbjct: 176 LNRLQLFDFFEVKVQGDGNCQFRALSDQLYSTPDRHKVVRRQVVNQLRSHPEIYEGYVPM 235

Query: 238 EYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLS 297
           EY +YLKKMS SGEWGDHVTLQAAAD + VKI+V+TSFKDTCYIEILP  +K K AI LS
Sbjct: 236 EYGDYLKKMSKSGEWGDHVTLQAAADTYGVKILVMTSFKDTCYIEILPINQKTKGAIFLS 295

Query: 298 FWAEVHYNSIFSQDDRPLGESKRKKKWWNFG 328
           FWAE+           PL  S+R+K     G
Sbjct: 296 FWAEI----------PPLMSSERRKSGGALG 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435383|ref|XP_002282609.1| PREDICTED: uncharacterized protein LOC100243216 [Vitis vinifera]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/345 (58%), Positives = 251/345 (72%), Gaps = 20/345 (5%)

Query: 1   MATEDQDSGFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNV 60
           M T +QD   V+WGL+ FD DP+ + GY   I+Q+D +  Y G  F+ +  D+    +NV
Sbjct: 1   MITYEQDPDVVRWGLQLFDGDPFSNCGYGGTIVQNDVS-YYDGPYFKEDHYDN--ECSNV 57

Query: 61  ESDEIIARTLQEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYS-------- 112
           E+DEIIA  LQEE SQLA++EA+  SH   E   +    + +W   S  NY         
Sbjct: 58  ENDEIIAHALQEELSQLAVDEAAGLSHEVVEDLQVSIFPE-EWPDQSMGNYGFGHESGQE 116

Query: 113 ----SGPSSSCSSPGD----GEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEI 164
                G SSSCSSP +    GE+  YSL++TDE  LDDEVGK LNQMV + HVP+INGEI
Sbjct: 117 DTDDMGLSSSCSSPDEKSYNGEDWSYSLDLTDEYALDDEVGKILNQMVPVPHVPKINGEI 176

Query: 165 PSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQL 224
           PS+DEAT DH+RLL+RLQL+  VE KVQGDGNCQFR+LSDQ+Y TPEHH+ +RQQ+V QL
Sbjct: 177 PSLDEATLDHQRLLDRLQLFDLVELKVQGDGNCQFRSLSDQVYCTPEHHQFIRQQVVNQL 236

Query: 225 KSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEIL 284
           KS+PE+YEGYVPM Y +YL+KMS +GEWGDHVTLQAAADL+ VKI VITSFKDTCYIEIL
Sbjct: 237 KSYPEIYEGYVPMAYGDYLEKMSKTGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEIL 296

Query: 285 PNVEKIKRAICLSFWAEVHYNSIFSQDDRPLGESKRKKKWWNFGN 329
           PNV++ +R + LSFWAEVHYNSI+ + D P  E+K+KK+WW+F N
Sbjct: 297 PNVQRSERVMLLSFWAEVHYNSIYFKGDVPEFETKKKKRWWSFRN 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746292|emb|CBI16348.3| unnamed protein product [Vitis vinifera]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/345 (58%), Positives = 251/345 (72%), Gaps = 20/345 (5%)

Query: 1   MATEDQDSGFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNV 60
           M T +QD   V+WGL+ FD DP+ + GY   I+Q+D +  Y G  F+ +  D+    +NV
Sbjct: 1   MITYEQDPDVVRWGLQLFDGDPFSNCGYGGTIVQNDVS-YYDGPYFKEDHYDN--ECSNV 57

Query: 61  ESDEIIARTLQEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYS-------- 112
           E+DEIIA  LQEE SQLA++EA+  SH   E   +    + +W   S  NY         
Sbjct: 58  ENDEIIAHALQEELSQLAVDEAAGLSHEVVEDLQVSIFPE-EWPDQSMGNYGFGHESGQE 116

Query: 113 ----SGPSSSCSSPGD----GEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEI 164
                G SSSCSSP +    GE+  YSL++TDE  LDDEVGK LNQMV + HVP+INGEI
Sbjct: 117 DTDDMGLSSSCSSPDEKSYNGEDWSYSLDLTDEYALDDEVGKILNQMVPVPHVPKINGEI 176

Query: 165 PSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQL 224
           PS+DEAT DH+RLL+RLQL+  VE KVQGDGNCQFR+LSDQ+Y TPEHH+ +RQQ+V QL
Sbjct: 177 PSLDEATLDHQRLLDRLQLFDLVELKVQGDGNCQFRSLSDQVYCTPEHHQFIRQQVVNQL 236

Query: 225 KSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEIL 284
           KS+PE+YEGYVPM Y +YL+KMS +GEWGDHVTLQAAADL+ VKI VITSFKDTCYIEIL
Sbjct: 237 KSYPEIYEGYVPMAYGDYLEKMSKTGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEIL 296

Query: 285 PNVEKIKRAICLSFWAEVHYNSIFSQDDRPLGESKRKKKWWNFGN 329
           PNV++ +R + LSFWAEVHYNSI+ + D P  E+K+KK+WW+F N
Sbjct: 297 PNVQRSERVMLLSFWAEVHYNSIYFKGDVPEFETKKKKRWWSFRN 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741626|emb|CBI32758.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/345 (61%), Positives = 240/345 (69%), Gaps = 25/345 (7%)

Query: 1   MATEDQDSGFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNV 60
           M   DQD   VQWGL  F  DP   SGY  ++ +HD N IY G+ FR    D  E+  +V
Sbjct: 1   MVIHDQDLDVVQWGLSLFGGDP--DSGYCCNLAEHDTN-IY-GQYFR----DHYETECSV 52

Query: 61  ESDEIIARTLQEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYSSG------ 114
           E+DE IA  LQEEFSQLAI EAS+ S A +EH M       DW      NY S       
Sbjct: 53  ENDERIAHVLQEEFSQLAITEASESSRAGEEH-MQAPIFPQDWLPLPAGNYRSAHEDDRE 111

Query: 115 ------PSSSCSSP----GDGEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEI 164
                 PS SCSSP     DGEE  YSLEITDE  LD EVGKRLNQ++   HVPRINGEI
Sbjct: 112 EVDHIVPSGSCSSPEERSCDGEEYSYSLEITDESALDGEVGKRLNQIIPAAHVPRINGEI 171

Query: 165 PSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQL 224
           PSVDEATSDH+RLL+RLQ +G VE KV+GDGNCQFRALSDQ Y TPEHHK VR+Q+V QL
Sbjct: 172 PSVDEATSDHQRLLDRLQHFGLVEFKVEGDGNCQFRALSDQFYRTPEHHKFVRRQVVNQL 231

Query: 225 KSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEIL 284
           KSHP++YEGYVPM Y +YLKKMS SGEWGDHVTLQAAAD + VKI++ TS+KD+  IEIL
Sbjct: 232 KSHPDIYEGYVPMAYDDYLKKMSRSGEWGDHVTLQAAADSYGVKIIIFTSYKDSSNIEIL 291

Query: 285 PNVEKIKRAICLSFWAEVHYNSIFSQDDRPLGESKRKKKWWNFGN 329
           P   K  R I LSFWAEVHYNSI+ Q++    ESK+KKKWW FGN
Sbjct: 292 PKAPKSNRVIYLSFWAEVHYNSIYPQEESLSYESKKKKKWWIFGN 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481389|ref|XP_002276656.2| PREDICTED: OTU domain-containing protein DDB_G0284757-like [Vitis vinifera]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/348 (60%), Positives = 240/348 (68%), Gaps = 28/348 (8%)

Query: 1   MATEDQDSGFVQWGLRFFDYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESSNNV 60
           M   DQD   VQWGL  F  DP   SGY  ++ +HD N IY G+ FR    D  E+  +V
Sbjct: 1   MVIHDQDLDVVQWGLSLFGGDP--DSGYCCNLAEHDTN-IY-GQYFR----DHYETECSV 52

Query: 61  ESDEIIARTLQEEFSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYSSG------ 114
           E+DE IA  LQEEFSQLAI EAS+ S A +EH M       DW      NY S       
Sbjct: 53  ENDERIAHVLQEEFSQLAITEASESSRAGEEH-MQAPIFPQDWLPLPAGNYRSAHEDDRE 111

Query: 115 ------PSSSCSSP----GDGEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEI 164
                 PS SCSSP     DGEE  YSLEITDE  LD EVGKRLNQ++   HVPRINGEI
Sbjct: 112 EVDHIVPSGSCSSPEERSCDGEEYSYSLEITDESALDGEVGKRLNQIIPAAHVPRINGEI 171

Query: 165 PSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQL 224
           PSVDEATSDH+RLL+RLQ +G VE KV+GDGNCQFRALSDQ Y TPEHHK VR+Q+V QL
Sbjct: 172 PSVDEATSDHQRLLDRLQHFGLVEFKVEGDGNCQFRALSDQFYRTPEHHKFVRRQVVNQL 231

Query: 225 KSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEIL 284
           KSHP++YEGYVPM Y +YLKKMS SGEWGDHVTLQAAAD + VKI++ TS+KD+  IEIL
Sbjct: 232 KSHPDIYEGYVPMAYDDYLKKMSRSGEWGDHVTLQAAADSYGVKIIIFTSYKDSSNIEIL 291

Query: 285 PNVEKIKRAICLSFWAEVHYNSIFSQDDRPLG---ESKRKKKWWNFGN 329
           P   K  R I LSFWAEVHYNSI+ Q+ R      ESK+KKKWW FGN
Sbjct: 292 PKAPKSNRVIYLSFWAEVHYNSIYPQEGREESLSYESKKKKKWWIFGN 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
TAIR|locus:2142659	356	AT5G03330 [Arabidopsis thalian	0.623	0.575	0.650	1.2e-79
TAIR|locus:2146673	345	AT5G04250 [Arabidopsis thalian	0.592	0.565	0.675	5.9e-74
TAIR|locus:2078648	219	AT3G02070 [Arabidopsis thalian	0.617	0.926	0.543	2.2e-57
TAIR|locus:2091633	245	AT3G22260 [Arabidopsis thalian	0.677	0.910	0.458	1.7e-50
DICTYBASE|DDB_G0284757	766	DDB_G0284757 "OTU domain conta	0.547	0.234	0.360	5e-20
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.361	0.126	0.322	4.2e-15
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.361	0.126	0.322	4.2e-15
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.382	0.287	0.323	2.9e-13
DICTYBASE|DDB_G0285907	537	DDB_G0285907 "OTU domain conta	0.458	0.281	0.286	4.4e-12
ZFIN|ZDB-GENE-030616-61	560	otud5a "OTU domain containing	0.519	0.305	0.251	5.6e-11

TAIR|locus:2142659 AT5G03330 [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
 Identities = 134/206 (65%), Positives = 162/206 (78%)

Query:   124 DGEEDPYSLEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERLLNRLQL 183
             D +E  YS E +D+C  D E G+RLNQMV I ++P+INGEIP  +EA SDHERL NRL++
Sbjct:   152 DTDEYVYSWE-SDQCDADGEFGRRLNQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEM 210

Query:   184 YGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYL 243
             + F E KV GDGNCQFRAL+DQLY T + HK VR+QIV QLKS P+ Y+GYVPM++S+YL
Sbjct:   211 FDFTEVKVPGDGNCQFRALADQLYKTADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYL 270

Query:   244 KKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVH 303
             +KMS SGEWGDHVTLQAAAD + VKIVV+TSFKDTCYIEILP  ++ K  I LSFWAEVH
Sbjct:   271 RKMSRSGEWGDHVTLQAAADAYRVKIVVLTSFKDTCYIEILPTSQESKGVIFLSFWAEVH 330

Query:   304 YNSIFSQDDRPLGESKRKKKWWNFGN 329
             YN+I+   D    E +RK+KWW FGN
Sbjct:   331 YNAIYLNRDTSETELQRKRKWWRFGN 356

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2146673 AT5G04250 [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
 Identities = 133/197 (67%), Positives = 160/197 (81%)

Query:   131 SLEITDECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERLLNRLQLYGFVEHK 190
             S+EI +E     EVGKRLNQM+ I HVP+INGE+PS DE  SDHERL  RLQLYG VE+K
Sbjct:   151 SVEIEEESW--SEVGKRLNQMIPIAHVPKINGELPSEDEQISDHERLFQRLQLYGLVENK 208

Query:   191 VQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSG 250
             ++GDGNCQFR+LSDQLY +PEHH  VR+Q+V QL  + E+YEGYVPM Y++YLK M  +G
Sbjct:   209 IEGDGNCQFRSLSDQLYRSPEHHNFVREQVVNQLAYNREIYEGYVPMAYNDYLKAMKRNG 268

Query:   251 EWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQ 310
             EWGDHVTLQAAADLF V++ VITSFKDTCYIEILP+ +K  R ICLSFWAEVHYNSI+ +
Sbjct:   269 EWGDHVTLQAAADLFGVRMFVITSFKDTCYIEILPHFQKSNRLICLSFWAEVHYNSIYPE 328

Query:   311 DDRPLGESKRKKKWWNF 327
              + P+ E K+KKK+W F
Sbjct:   329 GELPIPEGKKKKKYWVF 345

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2078648 AT3G02070 [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 112/206 (54%), Positives = 147/206 (71%)

Query:   124 DGEEDPY-SLEITDE-CLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERLLNRL 181
             D E+D   +  +++E   LD  VG+RL+ +  + HVPRIN  IP++++AT DH+RLL RL
Sbjct:    15 DTEDDRMIAFMLSEEYSKLDGAVGRRLSNLAPVPHVPRINCYIPNLNDATLDHQRLLQRL 74

Query:   182 QLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSE 241
              +YG  E KV GDGNCQFRALSDQLY +PE+HK VR+++V QLK    MYE YVPM+Y  
Sbjct:    75 NVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRREVVKQLKECRSMYESYVPMKYKR 134

Query:   242 YLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAE 301
             Y KKM   GEWGDH+TLQAAAD F  KI ++TSF+DTC+IEI+P  +  K  + LSFW+E
Sbjct:   135 YYKKMGKFGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQYQAPKGVLWLSFWSE 194

Query:   302 VHYNSIFSQDDRPLGESKRKKKWWNF 327
             VHYNS++     P+ + K K+K W F
Sbjct:   195 VHYNSLYDIQAAPV-QHKPKRKHWLF 219

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2091633 AT3G22260 [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 104/227 (45%), Positives = 142/227 (62%)

Query:   105 SSSTRNYXXXXXXXXXXXXDGEEDPYSLEITDECLL-DDEVGKRLNQMVAIRHVPRINGE 163
             S ST               D ++    +   DE L  + ++GKRL+ + +I H PR+N E
Sbjct:    19 SGSTSASSNSSFSSSVADTDDDQTIARILAEDESLRREGKLGKRLSHLDSIPHTPRVNRE 78

Query:   164 IPSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQ 223
             IP +++AT DHE L  RL  YG  E +++GDGNCQFRAL+DQL+   ++HK VR+ +V Q
Sbjct:    79 IPDINDATLDHELLSGRLATYGLAELQMEGDGNCQFRALADQLFRNADYHKHVRKHVVKQ 138

Query:   224 LKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEI 283
             LK   ++YE YVPM+Y  Y +KM   GEWGDHVTLQAAAD F  KI ++TSF+D  YIEI
Sbjct:   139 LKQQRKLYEEYVPMKYRHYTRKMKKHGEWGDHVTLQAAADRFEAKICLVTSFRDQSYIEI 198

Query:   284 LPNVEKIKRAICLSFWAEVHYNSIFSQDDRPLGE---SKRKKKWWNF 327
             LP+ +   R   LSFW+EVHYNS+++     L +    K ++K W F
Sbjct:   199 LPHNKNPLREAWLSFWSEVHYNSLYANGVLALPDVPTRKPRRKHWLF 245

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

DICTYBASE|DDB_G0284757 DDB_G0284757 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 248 (92.4 bits), Expect = 5.0e-20, P = 5.0e-20
 Identities = 70/194 (36%), Positives = 100/194 (51%)

Query:   127 EDPYSLEITDECLLDDEVGKRLNQMVA-IRHVPRIN-GEIPSVDEATSDHERLLNRLQLY 184
             +D YS EI    LL+  V K +N   + I     +N   +P   E     +RL  RL+LY
Sbjct:   570 QDQYS-EIKTNLLLEGLVLKNMNHDASLISSNVLLNLHPLPQSKEVQIAQQRLNERLELY 628

Query:   185 GFVEHK-VQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMY--EGYVPMEY-- 239
                  K + GDGNCQ  ALSDQLY    H + VR+ IV  L+ + +     G    ++  
Sbjct:   629 MLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVDWLRKNKDFQLPNGATICQFVN 688

Query:   240 ----SEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTC--YIEILPNVEKIKRA 293
                  +Y   MS +G WGDH+TL AAA+ F  KI +I+S +     +IEI+P+     + 
Sbjct:   689 TNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEIIPSKILNDKV 748

Query:   294 ICLSFWAEVHYNSI 307
             + LS +AE HY S+
Sbjct:   749 LLLSHYAEFHYGSL 762

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 213 (80.0 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 40/124 (32%), Positives = 75/124 (60%)

Query:   186 FVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPME--YSEYL 243
             F    ++ DGNC FRA+SDQLY+  E++K +R+++V  L  + E+Y+ ++  +  Y  Y+
Sbjct:    50 FYIKSIRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYI 109

Query:   244 KKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVH 303
             +++S+ G WG  + LQA  +++ V I++    ++ C +EI  N     + + L + +  H
Sbjct:   110 ERISLDGTWGGQLELQAVGEIYKVNILIYQ--ENGCILEI-KNHSDDNKCLQLHYASSEH 166

Query:   304 YNSI 307
             YNS+
Sbjct:   167 YNSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 213 (80.0 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 40/124 (32%), Positives = 75/124 (60%)

Query:   186 FVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPME--YSEYL 243
             F    ++ DGNC FRA+SDQLY+  E++K +R+++V  L  + E+Y+ ++  +  Y  Y+
Sbjct:    50 FYIKSIRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYI 109

Query:   244 KKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVH 303
             +++S+ G WG  + LQA  +++ V I++    ++ C +EI  N     + + L + +  H
Sbjct:   110 ERISLDGTWGGQLELQAVGEIYKVNILIYQ--ENGCILEI-KNHSDDNKCLQLHYASSEH 166

Query:   304 YNSI 307
             YNS+
Sbjct:   167 YNSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 195 (73.7 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 43/133 (32%), Positives = 74/133 (55%)

Query:   180 RLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPME- 238
             +L+ +GF+   V GDGNC FR+++DQL   P  H+  R+ I   ++ + +M+  ++  E 
Sbjct:    58 QLEPFGFIIKDVAGDGNCLFRSIADQLQDAPNEHRKYREAICKYIEKNKDMFAPFIDDEE 117

Query:   239 ---YSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIK-RAI 294
                + EY+++M     WG HV +QAA+  ++V I +     D    EI+ +    K + I
Sbjct:   118 FESFEEYIQEMREDATWGGHVEIQAASLAYNVNITIHQM--DQPRWEIVNHFPPEKNKTI 175

Query:   295 CLSFWAEVHYNSI 307
              LS+  + HYNS+
Sbjct:   176 HLSYHNDEHYNSV 188

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0285907 DDB_G0285907 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 187 (70.9 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 45/157 (28%), Positives = 84/157 (53%)

Query:   160 INGEIPSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQ 219
             IN  IP  DE T +     N  +  GF+  K++ DGNC FR+++DQ+Y   E H +VR++
Sbjct:   199 INNNIPFNDEKTFEE----NLKKSKGFIVRKMKQDGNCLFRSVADQIYGDQEMHNTVREK 254

Query:   220 IVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTC 279
              +  +++  + +  ++  ++++Y+ +      +G++  +QA A+LF+  I V +   D  
Sbjct:   255 CMDYMEAERDHFSQFITEDFADYIARKRTDKVFGNNTEMQAMAELFNRPIEVYSKTIDP- 313

Query:   280 YIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDRPLG 316
              I I     K    I LS+    HY+SI+  ++  +G
Sbjct:   314 -INIFHGSYKGNYPIRLSYLHGNHYDSIYDLNNPSVG 349

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-030616-61 otud5a "OTU domain containing 5a" [Danio rerio (taxid:7955)]

 Score = 178 (67.7 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 45/179 (25%), Positives = 88/179 (49%)

Query:   141 DDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDH--ERLLNRLQLYGFVEHKVQGDGNCQ 198
             + E G   N      +  R+  E P+  E   +H  E+ L   +  GFV  K++ DG C 
Sbjct:   167 EQEEGAGYNSEDEYENASRLQSEDPATVEQ-QEHWFEKALQEKK--GFVIKKMKEDGACL 223

Query:   199 FRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTL 258
             FRA++DQ+Y   + H+ VR+  +  L  + + +  YV  +++ Y+ +   +   G+H+ +
Sbjct:   224 FRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEM 283

Query:   259 QAAADLFHVKIVVITSFKDTCYIEILPNVEKIK-RAICLSFWAEVHYNSIFSQDDRPLG 316
             QA A++++  + V  S  +   I     + +     I +S+   +HYNS+ + +   +G
Sbjct:   284 QAMAEMYNRPVEVYQSGTEP--INTFHGIHQNNDEPIRVSYHRNIHYNSVVNPNKATIG 340

GO:0005575 "cellular_component" evidence=ND

GO:0032496 "response to lipopolysaccharide" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_1600015 hypothetical protein (338 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	2e-28

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score =  106 bits (266), Expect = 2e-28
 Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 10/122 (8%)

Query: 193 GDGNCQFRALSDQLY--HTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSG 250
           GDGNC F A+SDQL      E H  +R+ +V  L+ + E +E ++  + +EY K +S  G
Sbjct: 2   GDGNCLFHAVSDQLGDAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISKDG 61

Query: 251 EWGDHVTLQAAADLFHVKIVV--ITSFKDTCYIEILP--NVEKIKRAICLSFWA----EV 302
            WG ++ + A A +  V I+V  +   + T YI+I         K  I LS+        
Sbjct: 62  AWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLEYTGN 121

Query: 303 HY 304
           HY
Sbjct: 122 HY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	100.0
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.92
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.91
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.6
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.49
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.4
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.66
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.51

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.8e-37  Score=300.42  Aligned_cols=320  Identities=32%  Similarity=0.414  Sum_probs=253.6

Q ss_pred             ccccCCCCceeecccccCCCCCCC----CCCCCCcccccCCCCcc-ccccccCCCccccccCCccchHHHHHHHHHHHHH
Q 020231            2 ATEDQDSGFVQWGLRFFDYDPYLH----SGYHDDIIQHDGNDIYH-GRSFRNNDDDDAESSNNVESDEIIARTLQEEFSQ   76 (329)
Q Consensus         2 ~~~~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~q~~~~~   76 (329)
                      +.++++|++++|.|+.+..+..+.    .|-++.+.|.... +|. .++.+..|+.  .+...|.+|++||+++|++++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~-~~~~~g~~~~~~~~--~r~~~v~~~~~~~~~~~d~~~~   77 (371)
T KOG2605|consen    1 TFREEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVI-DYEPFGMGTDGYNN--KRYGEVDRDFMIARGHQDEVLT   77 (371)
T ss_pred             CCccccCchHHHHhhcCCCCcccccchhhhhccccccCCCC-CcCCccceeccccC--ccccchhhhhhhhccccccccc
Confidence            357899999999999887555444    5677777666533 444 5677777777  4688999999999999999999


Q ss_pred             HHHHHhccCCcccccccccccccCCC-CCCCC-------------C-----------------CCC----CCCCCCCCCC
Q 020231           77 LAIEEASQYSHAQDEHTMLETSQDHD-WNSSS-------------T-----------------RNY----SSGPSSSCSS  121 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~-----------------~~~----~~~~~~~~s~  121 (329)
                      ++.+|.+...+.-...+     ..++ |..++             .                 +.+    ...+..+-++
T Consensus        78 ~e~~e~~~~~~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~~~~~~~~  152 (371)
T KOG2605|consen   78 VEDAEMAAICQSVLFKV-----LYQERFKLPSDTPCNGENSPMCSFHSRRGNESFQAASFGGLEIDLEVERNSPEWLGQS  152 (371)
T ss_pred             ccHHHHhhHHhhhhhhh-----hhhhcccCCCCCcccccCCCCCcccccccccccccccccccccchhhhccCchhcccc
Confidence            99999998865332211     2222 11111             0                 000    0112222223


Q ss_pred             CCCCCCCccchhccc-ccccchHHhhhhhccccccCCCCCCCCCCCCcccchHHHHHHHHHHhCCcEEEEecCCCChHHH
Q 020231          122 PGDGEEDPYSLEITD-ECLLDDEVGKRLNQMVAIRHVPRINGEIPSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFR  200 (329)
Q Consensus       122 ~~~~~~~~~~~~~~~-~~~~~~~~~krl~~~~p~p~~p~~ng~iPs~dea~~d~~rL~~~L~~~GL~v~~V~GDGNCLFR  200 (329)
                      +++......+.+... ....+.++|.+++++.|++.+|.+++.+|+..+..++++++.+++..+|+.+++|.+||||+||
T Consensus       153 ~sd~~~~~~~~~~~~~~~~~~~~~g~~in~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fr  232 (371)
T KOG2605|consen  153 PSDPLRSVPSMEAIHARHPEAKEVGVRINDYNPKVLVPFINGLPPSEEEPQSAHERSAKRKKHFGFEYKKVVEDGSCLFR  232 (371)
T ss_pred             ccccccccccccchhhccccchhhcccccCCCccccccccccCCCchHHHHHHHHHHHHHHHHhhhhhhhcccCCchhhh
Confidence            333333333332222 1256789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHhcCCccHHHHHHHHHHHHhcCcccccccccccHHHHHHhhcCCCCCCchHHHHHHHH--hhCCcEEEEEcCCCc
Q 020231          201 ALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAAD--LFHVKIVVITSFKDT  278 (329)
Q Consensus       201 ALS~qL~g~~~~H~~VR~~vV~yL~~n~d~f~~fv~~~~~eYl~~Msk~g~WGg~iELqAlA~--~y~v~I~V~ss~~~~  278 (329)
                      |+|+|+|++.+.|.++|++++++++++++.|+.|+++++.+|+++|++++.||+|+|+||+|.  -+..++.++++.+.+
T Consensus       233 a~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t  312 (371)
T KOG2605|consen  233 ALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDT  312 (371)
T ss_pred             ccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeeccccc
Confidence            999999999999999999999999999999999999999999999999999999999999998  677888888899999


Q ss_pred             eEEEEcCCCCCCCCeEEEEecCCCcccccccC--C-CCCCccccccccccccCC
Q 020231          279 CYIEILPNVEKIKRAICLSFWAEVHYNSIFSQ--D-DRPLGESKRKKKWWNFGN  329 (329)
Q Consensus       279 ~~i~i~P~~~~~~~~I~Lsy~~g~HYdSV~~~--~-d~~~~~~~~~~~~~~~~~  329 (329)
                      +++.+.|........+++.||...||+.++..  . +......++||+||+||+
T Consensus       313 ~~~~~~~~~~~~~~~~~~n~~~~~h~~~~~~~~~~~~s~~~~~~~~r~~~~~~~  366 (371)
T KOG2605|consen  313 CYIQTPPAIEESVKMEKYNFWVEVHYNTARHSGKSADSATLEEKTKRKSLRRGT  366 (371)
T ss_pred             ceeccCcccccchhhhhhcccchhhhhhcccccccccccchhhccCCCchhhcc
Confidence            99988887777788899999999999999984  3 332344578899999985

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.92  E-value=1.1e-25  Score=185.91  Aligned_cols=107  Identities=35%  Similarity=0.669  Sum_probs=93.0

Q ss_pred             cCCCChHHHHHHHhHh----cCCccHHHHHHHHHHHHh-cCcccccccccccHHHHHHhhcCCCCCCchHHHHHHHHhhC
Q 020231          192 QGDGNCQFRALSDQLY----HTPEHHKSVRQQIVTQLK-SHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFH  266 (329)
Q Consensus       192 ~GDGNCLFRALS~qL~----g~~~~H~~VR~~vV~yL~-~n~d~f~~fv~~~~~eYl~~Msk~g~WGg~iELqAlA~~y~  266 (329)
                      ||||||||||||+||+    +++..|.+||+.|++||+ +|++.|..|+..+      +|+++|+|||++||+|+|++|+
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~   74 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLN   74 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhC
Confidence            7999999999999999    999999999999999999 9999999988655      9999999999999999999999


Q ss_pred             CcEEEEEcCCCce--EEEEcC--CCCCCCCeEEEEecC-----CCcc
Q 020231          267 VKIVVITSFKDTC--YIEILP--NVEKIKRAICLSFWA-----EVHY  304 (329)
Q Consensus       267 v~I~V~ss~~~~~--~i~i~P--~~~~~~~~I~Lsy~~-----g~HY  304 (329)
                      |+|+|++......  ++.+.+  ......++|+|+|..     ++||
T Consensus        75 ~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   75 RPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             SEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             CeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            9999998765543  344443  123567899999998     9998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.9e-24  Score=203.83  Aligned_cols=141  Identities=21%  Similarity=0.403  Sum_probs=123.3

Q ss_pred             cccchHHHHHHHHHHhCCcEEEEecCCCChHHHHHHHhHhcC---CccHHHHHHHHHHHHhcCccccccccc--------
Q 020231          168 DEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHT---PEHHKSVRQQIVTQLKSHPEMYEGYVP--------  236 (329)
Q Consensus       168 dea~~d~~rL~~~L~~~GL~v~~V~GDGNCLFRALS~qL~g~---~~~H~~VR~~vV~yL~~n~d~f~~fv~--------  236 (329)
                      +...++.+.|.+.|...||...+||.||+|||+||++||--.   .-..+.||.++++||++|.+.|.+|+.        
T Consensus       141 ~~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~  220 (302)
T KOG2606|consen  141 DAKSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSL  220 (302)
T ss_pred             chhhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccC
Confidence            345677889999999999999999999999999999998633   357899999999999999999999873        


Q ss_pred             --ccHHHHHHhhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCCceEEEEcCCCCCCCCeEEEEecC-----CCccccccc
Q 020231          237 --MEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWA-----EVHYNSIFS  309 (329)
Q Consensus       237 --~~~~eYl~~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~i~i~P~~~~~~~~I~Lsy~~-----g~HYdSV~~  309 (329)
                        .+|+.||+.|+.++.|||++||.|+|.+|++||.||...++.  +.|++...+ .+||.|+|++     |.||||+.+
T Consensus       221 ~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~--~~~geey~k-d~pL~lvY~rH~y~LGeHYNS~~~  297 (302)
T KOG2606|consen  221 GPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGPI--LEYGEEYGK-DKPLILVYHRHAYGLGEHYNSVTP  297 (302)
T ss_pred             CHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCCc--eeechhhCC-CCCeeeehHHhHHHHHhhhccccc
Confidence              269999999999999999999999999999999999988764  456655544 6899999987     799999987


Q ss_pred             CC
Q 020231          310 QD  311 (329)
Q Consensus       310 ~~  311 (329)
                      ..
T Consensus       298 ~~  299 (302)
T KOG2606|consen  298 LK  299 (302)
T ss_pred             cc
Confidence            54

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.1e-15  Score=143.34  Aligned_cols=123  Identities=19%  Similarity=0.399  Sum_probs=102.7

Q ss_pred             cEEEEecCCCChHHHHHHHhHhcCCc-cHHHHHHHHHHHHhcCcccccc-cccccHHHHHHhhcCCCCCCchHHHHHHHH
Q 020231          186 FVEHKVQGDGNCQFRALSDQLYHTPE-HHKSVRQQIVTQLKSHPEMYEG-YVPMEYSEYLKKMSMSGEWGDHVTLQAAAD  263 (329)
Q Consensus       186 L~v~~V~GDGNCLFRALS~qL~g~~~-~H~~VR~~vV~yL~~n~d~f~~-fv~~~~~eYl~~Msk~g~WGg~iELqAlA~  263 (329)
                      |.++.||.|.+|||+||++-+++.-. .-.++|+.+.+.+.+||+.|.. ++...-.+||..+.++..|||.|||..+|+
T Consensus       110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~  189 (307)
T KOG3288|consen  110 LSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSD  189 (307)
T ss_pred             eEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehh
Confidence            66778999999999999999987533 3369999999999999999975 567788999999999999999999999999


Q ss_pred             hhCCcEEEEEcCCCceEEEEcCCCCCCCCeEEEEecCCCcccccccCC
Q 020231          264 LFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQD  311 (329)
Q Consensus       264 ~y~v~I~V~ss~~~~~~i~i~P~~~~~~~~I~Lsy~~g~HYdSV~~~~  311 (329)
                      .|+|.|+|++...  ..|+-+..+......++|.| +|.|||++.-..
T Consensus       190 ~ygveI~vvDiqt--~rid~fged~~~~~rv~lly-dGIHYD~l~m~~  234 (307)
T KOG3288|consen  190 YYGVEICVVDIQT--VRIDRFGEDKNFDNRVLLLY-DGIHYDPLAMNE  234 (307)
T ss_pred             hhceeEEEEecce--eeehhcCCCCCCCceEEEEe-cccccChhhhcc
Confidence            9999999997643  23444455555667777766 899999998655

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.49  E-value=2.1e-13  Score=126.87  Aligned_cols=95  Identities=24%  Similarity=0.320  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHhcCccccccccc----ccHHHHHH-hhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCC---c--eEEEE
Q 020231          214 KSVRQQIVTQLKSHPEMYEGYVP----MEYSEYLK-KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKD---T--CYIEI  283 (329)
Q Consensus       214 ~~VR~~vV~yL~~n~d~f~~fv~----~~~~eYl~-~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~---~--~~i~i  283 (329)
                      ..+|..+..||+.|++.|.+|++    .++++||. .+...+.-+||+.|.|||++++++|.|+..++.   .  ....+
T Consensus       140 ~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~  219 (244)
T PF10275_consen  140 IFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEF  219 (244)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEE
T ss_pred             HHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccC
Confidence            47899999999999999999997    67999997 577788889999999999999999999988764   1  12222


Q ss_pred             cCCCCCCCCeEEEEecCCCccccccc
Q 020231          284 LPNVEKIKRAICLSFWAEVHYNSIFS  309 (329)
Q Consensus       284 ~P~~~~~~~~I~Lsy~~g~HYdSV~~  309 (329)
                      .|......+.|.|.| +++|||.+||
T Consensus       220 ~~~~~~~~~~i~LLy-rpgHYdIly~  244 (244)
T PF10275_consen  220 PPDNESQEPQITLLY-RPGHYDILYP  244 (244)
T ss_dssp             S-SSTTSS-SEEEEE-ETBEEEEEEE
T ss_pred             CCccCCCCCEEEEEE-cCCccccccC
Confidence            223335678899987 5679999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=7.9e-13  Score=122.60  Aligned_cols=95  Identities=17%  Similarity=0.284  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhcCccccccccc--ccHHHHHHh-hcCCCCCCchHHHHHHHHhhCCcEEEEEcCCCceE-E--EEcCC
Q 020231          213 HKSVRQQIVTQLKSHPEMYEGYVP--MEYSEYLKK-MSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCY-I--EILPN  286 (329)
Q Consensus       213 H~~VR~~vV~yL~~n~d~f~~fv~--~~~~eYl~~-Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~-i--~i~P~  286 (329)
                      .+.+|..+..+|++|++.|++||+  +++.+||.. +....+-.|||+|.||++++++.|.|...++..+- .  ...| 
T Consensus       156 V~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp-  234 (256)
T KOG3991|consen  156 VMYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP-  234 (256)
T ss_pred             HHHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc-
Confidence            467899999999999999999996  589999985 55557779999999999999999999988875431 1  1223 


Q ss_pred             CCCCCCeEEEEecCCCcccccccC
Q 020231          287 VEKIKRAICLSFWAEVHYNSIFSQ  310 (329)
Q Consensus       287 ~~~~~~~I~Lsy~~g~HYdSV~~~  310 (329)
                       ....+.|+|.| +.+|||.||++
T Consensus       235 -e~s~P~I~LLY-rpGHYdilY~~  256 (256)
T KOG3991|consen  235 -EASAPEIYLLY-RPGHYDILYKK  256 (256)
T ss_pred             -cccCceEEEEe-cCCccccccCC
Confidence             34678899976 78999999974

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=6.9e-09  Score=99.37  Aligned_cols=122  Identities=17%  Similarity=0.150  Sum_probs=87.3

Q ss_pred             HhCCcEEEEecCCCChHHHHHHHhHhcC-----CccHHHHHHHHHHHHhcCccccccccc-------ccHHHHHHhhcCC
Q 020231          182 QLYGFVEHKVQGDGNCQFRALSDQLYHT-----PEHHKSVRQQIVTQLKSHPEMYEGYVP-------MEYSEYLKKMSMS  249 (329)
Q Consensus       182 ~~~GL~v~~V~GDGNCLFRALS~qL~g~-----~~~H~~VR~~vV~yL~~n~d~f~~fv~-------~~~~eYl~~Msk~  249 (329)
                      ..-+++-..+.|||+|+|-+||+||--.     -+.-+..|-.=..|..++...|.++.-       ..|++|++.|..+
T Consensus       167 y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~~  246 (306)
T COG5539         167 YATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFD  246 (306)
T ss_pred             HHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhhccc
Confidence            3445666779999999999999998521     122355555555666666667776541       3799999999999


Q ss_pred             CCCCchHHHHHHHHhhCCcEEEEEcCCCceEEEEcCCCCCCCCeEEEEecC----CCccccc
Q 020231          250 GEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWA----EVHYNSI  307 (329)
Q Consensus       250 g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~i~i~P~~~~~~~~I~Lsy~~----g~HYdSV  307 (329)
                      ..||..+|+++||..|++|+.++...++.  |...+.+.++.  ..+.|+.    -+|||++
T Consensus       247 a~~g~~~ei~qLas~lk~~~~~~nT~~~~--ik~n~c~~~~~--~e~~~~~Ha~a~GH~n~~  304 (306)
T COG5539         247 ASDGITIEIQQLASLLKNPHYYTNTASPS--IKCNICGTGFV--GEKDYYAHALATGHYNFG  304 (306)
T ss_pred             ccccchHHHHHHHHHhcCceEEeecCCce--EEeeccccccc--hhhHHHHHHHhhcCcccc
Confidence            99999999999999999999999876654  55444333332  3333332    2499987

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=3.8e-08  Score=94.38  Aligned_cols=110  Identities=17%  Similarity=0.270  Sum_probs=90.7

Q ss_pred             CCCChHHHHHHHhHhcCCccHHHHHHHHHHHHhcCccccccccc-ccHHHHHHhhcCCCCCC-chHHHHHHHHhhCCcEE
Q 020231          193 GDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVP-MEYSEYLKKMSMSGEWG-DHVTLQAAADLFHVKIV  270 (329)
Q Consensus       193 GDGNCLFRALS~qL~g~~~~H~~VR~~vV~yL~~n~d~f~~fv~-~~~~eYl~~Msk~g~WG-g~iELqAlA~~y~v~I~  270 (329)
                      .|..|+|+|.+..++.-  ...++|..+...+.+||+.|.+.+. -+.-.|+.++.+...|| |++|+.++++.|++.|+
T Consensus       119 ~d~srl~q~~~~~l~~a--sv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~  196 (306)
T COG5539         119 DDNSRLFQAERYSLRDA--SVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH  196 (306)
T ss_pred             CchHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence            57999999999998743  7789999999999999999999875 47889999999999999 99999999999999999


Q ss_pred             EEEcCCCceEEEEcCCCCCCCCeEEEEecCCCcccccc
Q 020231          271 VITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIF  308 (329)
Q Consensus       271 V~ss~~~~~~i~i~P~~~~~~~~I~Lsy~~g~HYdSV~  308 (329)
                      |+..+.+.. ..+.+.  +....|++.| .|.|||..+
T Consensus       197 ~Vdv~~~~~-dr~~~~--~~~q~~~i~f-~g~hfD~~t  230 (306)
T COG5539         197 VVDVDKDSE-DRYNSH--PYVQRISILF-TGIHFDEET  230 (306)
T ss_pred             eeecchhHH-hhccCC--hhhhhhhhhh-cccccchhh
Confidence            998876531 122321  2234566655 789999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	329
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		2e-11
3tmo_A	184	The Catalytic Domain Of Human Deubiquitinase Duba L		2e-10
3pfy_A	185	The Catalytic Domain Of Human Otud5 Length = 185		2e-08

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLK 244
           GF+  +++ DG C FRA++DQ+Y   + H+ VR+  +  L  + + +  YV  +++ Y+ 
Sbjct: 45  GFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 104
Query: 245 KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKR----AICLSFWA 300
           +   +   G+H+ +QA A++++  + V      T  +E +     I +     I +S+  
Sbjct: 105 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHR 164
Query: 301 EVHYNSIFSQDDRPLG 316
            +HYNS+ + +   +G
Sbjct: 165 NIHYNSVVNPNKATIG 180

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLK 244
           GF+  + + DG C FRA++DQ+Y   + H+ VR+     L  + + +  YV  +++ Y+ 
Sbjct: 45  GFIIKQXKEDGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYIN 104
Query: 245 KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKR----AICLSFWA 300
           +   +   G+H+  QA A+ ++  + V      T  +E +     I +     I +S+  
Sbjct: 105 RKRKNNCHGNHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHR 164
Query: 301 EVHYNSIFSQDDRPLG 316
            +HYNS+ + +   +G
Sbjct: 165 NIHYNSVVNPNKATIG 180

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLK 244
           GF+  + + DG C FRA++DQ+Y   + H+ VR+     L  + + +  YV  +++ Y+ 
Sbjct: 58  GFIIKQXKEDGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYIN 117
Query: 245 KMSMSGEWGDHVTLQAAADLFHVKIVV-------ITSFKDTCYIEILPNVEKIKRAICLS 297
           +   +   G+H+  QA A+ ++  + V       I +F      E  P        I +S
Sbjct: 118 RKRKNNCHGNHIEXQAXAEXYNRPVEVYQYSTEPINTFHGIHQNEDEP--------IRVS 169
Query: 298 FWAEVHYNSIFS 309
           +   +HYNS+ +
Sbjct: 170 YHRNIHYNSVVN 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
3pfy_A	185	OTU domain-containing protein 5; structural genomi	3e-36
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	7e-30
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	1e-28
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	1e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  128 bits (322), Expect = 3e-36
 Identities = 34/155 (21%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 161 NGEIPSVDEATSDHER---LLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVR 217
              I ++D AT + +            GF+  +++ DG C FRA++DQ+Y   + H+ VR
Sbjct: 31  AARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVR 90

Query: 218 QQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKD 277
           +  +  L  + + +  YV  +++ Y+ +   +   G+H+ +QA A++++  + V   +  
Sbjct: 91  KHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVY-QYST 149

Query: 278 TCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDD 312
                     +     I +S+   +HYNS+ + + 
Sbjct: 150 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 184

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  111 bits (279), Expect = 7e-30
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 10/136 (7%)

Query: 180 RLQLYG-FVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVP-- 236
           R  +   F   +  GDGNC + ++++        H      I    +S    Y    P  
Sbjct: 24  RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHS--YHYIKRLTESAARKYYQEEPEA 81

Query: 237 ----MEYSEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEIL-PNVEKIK 291
               +   +YLK+M    EWG  +     A    + I++ T          +      + 
Sbjct: 82  RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVF 141

Query: 292 RAICLSFWAEVHYNSI 307
            A+ L    + H++++
Sbjct: 142 TAVNLLHSGQTHFDAL 157

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score =  109 bits (273), Expect = 1e-28
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 9/134 (6%)

Query: 186 FVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMY------EGYVPMEY 239
           F   +  GDGNC + ++++        H      I    +S    Y         V +  
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKTDHS--YHYIKRLTESAARKYYQEEPEARLVGLSL 88

Query: 240 SEYLKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVE-KIKRAICLSF 298
            +YLK+M    EWG  +     A    + I++ T          +   +  +  A+ L  
Sbjct: 89  EDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLH 148

Query: 299 WAEVHYNSIFSQDD 312
             + H++++     
Sbjct: 149 SGQTHFDALRILPQ 162

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score =  103 bits (259), Expect = 1e-26
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMY-EGYVPMEYSEYL 243
               H V  D +C F A++  ++        +R+ +  ++ ++P  + +  +     +Y 
Sbjct: 19  VLSVHPVLDDNSCLFHAIAYGIFKQDSVRD-LREMVSKEVLNNPVKFNDAILDKPNKDYA 77

Query: 244 KKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVH 303
           + +     WG  + +   +D   V I V+             N +K    I + F    H
Sbjct: 78  QWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEK---FNEDKFDNYILILFNGI-H 133

Query: 304 YNSIFSQDDRP 314
           Y+S+   + + 
Sbjct: 134 YDSLTMNEFKT 144

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 51/335 (15%), Positives = 100/335 (29%), Gaps = 81/335 (24%)

Query: 19  DYDPYLHSGYHDDIIQHDGNDIYHGRSFRNNDDDDAESS--NNVESDEIIARTLQEE--- 73
           D++   H   + DI+    +      +F   D  D   S  +  E D II          
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFV--DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 74  --FSQLAIEEASQYSHAQDEHTMLETSQDHDWNSSSTRNYSSGPS------SSCSSP--G 123
             F  L  ++        +E  +L    ++ +  S  +     PS               
Sbjct: 66  RLFWTLLSKQEEMVQKFVEE--VLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 124 DGEE-DPYSLEITD------ECLLDDEV------------GKR-LNQMVA--IRHVPRIN 161
           D +    Y++          + LL+               GK  +   V    +   +++
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 162 GEI--PSVDEATSDHERLLNRLQLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQ 219
            +I   ++    S    L    +L        Q D N  + + SD   +      S++ +
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLL------YQIDPN--WTSRSDHSSNIKLRIHSIQAE 233

Query: 220 IVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQAAADLF--HVKIVVITSFKD 277
           +   LKS P          Y   L  +        +V    A + F    KI++ T  + 
Sbjct: 234 LRRLLKSKP----------YENCLLVL-------LNVQNAKAWNAFNLSCKILLTT--RF 274

Query: 278 TCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDD 312
               + L        ++        H++   + D+
Sbjct: 275 KQVTDFLSAATTTHISL-------DHHSMTLTPDE 302

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.98
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.96
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.86
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.82
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.77
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.73
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.59
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.49

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=2e-36  Score=271.67  Aligned_cols=135  Identities=24%  Similarity=0.511  Sum_probs=103.1

Q ss_pred             HHHHHHH-HhCCcEEEEecCCCChHHHHHHHhHhcCCccHHHHHHHHHHHHhcCcccccccccccHHHHHHhhcCCCCCC
Q 020231          175 ERLLNRL-QLYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWG  253 (329)
Q Consensus       175 ~rL~~~L-~~~GL~v~~V~GDGNCLFRALS~qL~g~~~~H~~VR~~vV~yL~~n~d~f~~fv~~~~~eYl~~Msk~g~WG  253 (329)
                      +.|.+.| +.+||++++|+|||||||||||+||+++++.|..||+.|++||++|++.|.+|++++|++||++|+++++||
T Consensus        47 ~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WG  126 (185)
T 3pfy_A           47 HWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHG  126 (185)
T ss_dssp             HHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----------------C
T ss_pred             HHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCccc
Confidence            3455555 799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhCCcEEEEEcCCCceEEEEcC-CCCCCCCeEEEEecCCCcccccccCC
Q 020231          254 DHVTLQAAADLFHVKIVVITSFKDTCYIEILP-NVEKIKRAICLSFWAEVHYNSIFSQD  311 (329)
Q Consensus       254 g~iELqAlA~~y~v~I~V~ss~~~~~~i~i~P-~~~~~~~~I~Lsy~~g~HYdSV~~~~  311 (329)
                      |++||+|||++|+++|+|++.....  +.+.+ ......++|+|+|++++|||||+...
T Consensus       127 g~iEL~AlS~~~~v~I~V~~~~~~~--i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~  183 (185)
T 3pfy_A          127 NHIEMQAMAEMYNRPVEVYQYSTEP--INTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN  183 (185)
T ss_dssp             CHHHHHHHHHHHTSCEEEESSCSSC--SEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred             hHHHHHHHHHhhCCcEEEEECCCCC--eEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence            9999999999999999999875432  33333 33456889999999999999998654

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.98  E-value=9.1e-33  Score=252.20  Aligned_cols=128  Identities=16%  Similarity=0.297  Sum_probs=112.7

Q ss_pred             hCCcEEEEecCCCChHHHHHHHhHhcCCccHHHHHHHHHHHHhcCccccc-ccccccHHHHHHhhcCCCCCCchHHHHHH
Q 020231          183 LYGFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYE-GYVPMEYSEYLKKMSMSGEWGDHVTLQAA  261 (329)
Q Consensus       183 ~~GL~v~~V~GDGNCLFRALS~qL~g~~~~H~~VR~~vV~yL~~n~d~f~-~fv~~~~~eYl~~Msk~g~WGg~iELqAl  261 (329)
                      ..||.+++|+|||||||||||+|| +++..|..||+.|++||++|++.|. .|++++|++||++|+++++|||++||+||
T Consensus        17 ~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~Al   95 (212)
T 3by4_A           17 ENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGII   95 (212)
T ss_dssp             CSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHHH
T ss_pred             CCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHHH
Confidence            457999999999999999999999 9999999999999999999999996 56789999999999999999999999999


Q ss_pred             HHhhCCcEEEEEcCCCceEEEEcCCCCCCCCeEEEEecCCCcccccccCCCCCC
Q 020231          262 ADLFHVKIVVITSFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDRPL  315 (329)
Q Consensus       262 A~~y~v~I~V~ss~~~~~~i~i~P~~~~~~~~I~Lsy~~g~HYdSV~~~~d~~~  315 (329)
                      |++|+++|.|++.... ..+.|.+. . ..++|+|+|+ |+|||||+...+...
T Consensus        96 s~~~~~~I~V~~~~~~-~~~~~~~~-~-~~~~I~L~Y~-g~HYdsl~~~~d~~~  145 (212)
T 3by4_A           96 SDALAVAIYVVDIDAV-KIEKFNED-K-FDNYILILFN-GIHYDSLTMNEFKTV  145 (212)
T ss_dssp             HHHHTCEEEEEETTTT-EEEEESTT-T-CSEEEEEEEC-SSCEEEEEETTTBCC
T ss_pred             HHHHCCCEEEEECCCC-CeEEeCCC-C-CCCeEEEEEc-CCcceEEecCCCccc
Confidence            9999999999998632 34455443 2 6789999997 899999999555444

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.97  E-value=3.5e-30  Score=230.95  Aligned_cols=124  Identities=19%  Similarity=0.354  Sum_probs=107.8

Q ss_pred             cEEEEecCCCChHHHHHHHhHhcC-Ccc-----HHHHHHHHHHHHhcCcccccccccccHHHHHHhhcCCCCCCchHHHH
Q 020231          186 FVEHKVQGDGNCQFRALSDQLYHT-PEH-----HKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQ  259 (329)
Q Consensus       186 L~v~~V~GDGNCLFRALS~qL~g~-~~~-----H~~VR~~vV~yL~~n~d~f~~fv~~~~~eYl~~Msk~g~WGg~iELq  259 (329)
                      +.+.+|+|||||||||||+||+++ +..     |.+||+.|++||++|++.  .+++++|++||++|+++++|||++||+
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~  108 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence            788899999999999999999998 666     999999999999999999  456889999999999999999999999


Q ss_pred             HHHHhhCCcEEEEEcCCCc---eEEEEcCCCCCCCCeEEEEecCCCcccccccCCCC
Q 020231          260 AAADLFHVKIVVITSFKDT---CYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDR  313 (329)
Q Consensus       260 AlA~~y~v~I~V~ss~~~~---~~i~i~P~~~~~~~~I~Lsy~~g~HYdSV~~~~d~  313 (329)
                      |+|++|+++|+|++...+.   ..+.+.+.  ...++|+|+|++++|||+|++..+.
T Consensus       109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~~--~~~~~I~L~Y~g~~HYdsl~~~~~~  163 (185)
T 3phx_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQF  163 (185)
T ss_dssp             HHHHHHCCCEEEEEC--CCBCCEEEEESSC--CTTTSEEEEEETTTEEEEEEECGGG
T ss_pred             HHHHHHCCcEEEEEecCCCCceEEEEcCCC--CCCCEEEEEECCCcCchhceECCCC
Confidence            9999999999999876654   23445432  3478999999888999999998764

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.96  E-value=9.9e-30  Score=233.59  Aligned_cols=126  Identities=19%  Similarity=0.343  Sum_probs=110.3

Q ss_pred             cEEEEecCCCChHHHHHHHhHhcC-Ccc-----HHHHHHHHHHHHhcCcccccccccccHHHHHHhhcCCCCCCchHHHH
Q 020231          186 FVEHKVQGDGNCQFRALSDQLYHT-PEH-----HKSVRQQIVTQLKSHPEMYEGYVPMEYSEYLKKMSMSGEWGDHVTLQ  259 (329)
Q Consensus       186 L~v~~V~GDGNCLFRALS~qL~g~-~~~-----H~~VR~~vV~yL~~n~d~f~~fv~~~~~eYl~~Msk~g~WGg~iELq  259 (329)
                      +.+.+|+|||||||||||+||+++ +..     |..||+.|++||++|++.  .+++++|++||++|+++++|||++||+
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~  108 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence            888999999999999999999998 566     999999999999999999  456889999999999999999999999


Q ss_pred             HHHHhhCCcEEEEEcCCC--c-eEEEEcCCCCCCCCeEEEEecCCCcccccccCCCCCC
Q 020231          260 AAADLFHVKIVVITSFKD--T-CYIEILPNVEKIKRAICLSFWAEVHYNSIFSQDDRPL  315 (329)
Q Consensus       260 AlA~~y~v~I~V~ss~~~--~-~~i~i~P~~~~~~~~I~Lsy~~g~HYdSV~~~~d~~~  315 (329)
                      |+|++|+++|+|++...+  . ..+.+.+.  ...++|+|+|++++|||+|++..+...
T Consensus       109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~--~~~~~I~L~Y~g~~HYdSL~~~~d~~~  165 (219)
T 3phu_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFET  165 (219)
T ss_dssp             HHHHHTTCCEEEEEESSSSBEEEEEEESSC--CTTTSEEEEEETTTEEEEEEECTTTCC
T ss_pred             HHHHHhCCCEEEEEecCCCCceeEEEecCC--CCCCeEEEEECCCcCchhheECCCCCC
Confidence            999999999999987765  2 23445443  347899999998899999999987543

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.86  E-value=1.3e-21  Score=180.92  Aligned_cols=96  Identities=11%  Similarity=0.291  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhcCcccccccccc--cHHHHHH-hhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCCceEEE--EcCCC
Q 020231          213 HKSVRQQIVTQLKSHPEMYEGYVPM--EYSEYLK-KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIE--ILPNV  287 (329)
Q Consensus       213 H~~VR~~vV~yL~~n~d~f~~fv~~--~~~eYl~-~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~i~--i~P~~  287 (329)
                      ...+|..+..||++|++.|.+|+++  ++++||+ .+..+++||||++|+|||++++++|.|+..+++...+.  ..|. 
T Consensus       132 v~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~-  210 (234)
T 1tff_A          132 VQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE-  210 (234)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC-
T ss_pred             HHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC-
Confidence            3568999999999999999999975  8999999 79999999999999999999999999999877542221  1232 


Q ss_pred             CCCCCeEEEEecCCCcccccccCC
Q 020231          288 EKIKRAICLSFWAEVHYNSIFSQD  311 (329)
Q Consensus       288 ~~~~~~I~Lsy~~g~HYdSV~~~~  311 (329)
                       ...+.|+|+|. ++|||+||+.+
T Consensus       211 -~~~~~I~LlY~-pgHYdily~~~  232 (234)
T 1tff_A          211 -AATPSVYLLYK-TSHYNILYAAD  232 (234)
T ss_dssp             -CSSCSEEEEEE-TTEEEEEEECC
T ss_pred             -CCCCeEEEEEC-CCCceecccCC
Confidence             35678999996 46999999864

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.82  E-value=9.1e-20  Score=168.36  Aligned_cols=94  Identities=17%  Similarity=0.255  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHhcCcccccccccc--cHHHHHH-hhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCCc---eEEEEcCC
Q 020231          213 HKSVRQQIVTQLKSHPEMYEGYVPM--EYSEYLK-KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDT---CYIEILPN  286 (329)
Q Consensus       213 H~~VR~~vV~yL~~n~d~f~~fv~~--~~~eYl~-~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~~---~~i~i~P~  286 (329)
                      ...+|..++.||++|++.|.+|+++  ++++||. .+..+++||||++|+|||++|+++|.|+..++..   ......|.
T Consensus       135 v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~  214 (234)
T 2zfy_A          135 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE  214 (234)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST
T ss_pred             HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC
Confidence            3578999999999999999999975  8999998 6999999999999999999999999999987653   12223343


Q ss_pred             CCCCCCeEEEEecCCCccccccc
Q 020231          287 VEKIKRAICLSFWAEVHYNSIFS  309 (329)
Q Consensus       287 ~~~~~~~I~Lsy~~g~HYdSV~~  309 (329)
                        ...+.|+|+|.. +|||+|||
T Consensus       215 --~~~p~I~LlY~p-gHYdiLy~  234 (234)
T 2zfy_A          215 --GSEPKVYLLYRP-GHYDILYK  234 (234)
T ss_dssp             --TCCCSEEEEEET-TEEEEEEC
T ss_pred             --CCCCeEEEEECC-CCcccCCC
Confidence              246789999975 59999986

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.77  E-value=1.5e-18  Score=164.72  Aligned_cols=102  Identities=17%  Similarity=0.249  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHhcCcccccccccc--cHHHHHH-hhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCCc----eEEE-Ec
Q 020231          213 HKSVRQQIVTQLKSHPEMYEGYVPM--EYSEYLK-KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDT----CYIE-IL  284 (329)
Q Consensus       213 H~~VR~~vV~yL~~n~d~f~~fv~~--~~~eYl~-~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~~----~~i~-i~  284 (329)
                      ...||..+..||++|++.|.+|+.+  ++++||+ .|...++||||++|+|||++|+++|.|+..++..    .... + 
T Consensus       170 v~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-  248 (284)
T 4dhi_B          170 LMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-  248 (284)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-
T ss_pred             HHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-
Confidence            4678999999999999999999964  8999999 8999999999999999999999999999876531    1122 3 


Q ss_pred             CCCCC-CCCeEEEEecCCCcccccccCCCCCCc
Q 020231          285 PNVEK-IKRAICLSFWAEVHYNSIFSQDDRPLG  316 (329)
Q Consensus       285 P~~~~-~~~~I~Lsy~~g~HYdSV~~~~d~~~~  316 (329)
                      |.... ..+.|+|.| +++|||.||+....+-+
T Consensus       249 p~~~~~~~p~I~LLY-rpgHYDILY~~~p~~~~  280 (284)
T 4dhi_B          249 PSDDQQIAPEITLLY-RPGHYDVIYKKDSTEAS  280 (284)
T ss_dssp             SCCCSCCCCSEEEEE-ETTEEEEEEECC-----
T ss_pred             CCCCCCCCCEEEEee-cCCCccccccCCCCchh
Confidence            65432 346799987 67899999998865543

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.73  E-value=4.6e-18  Score=167.56  Aligned_cols=94  Identities=17%  Similarity=0.245  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhcCcccccccccc--cHHHHHH-hhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCC-ceE--EEEcCC
Q 020231          213 HKSVRQQIVTQLKSHPEMYEGYVPM--EYSEYLK-KMSMSGEWGDHVTLQAAADLFHVKIVVITSFKD-TCY--IEILPN  286 (329)
Q Consensus       213 H~~VR~~vV~yL~~n~d~f~~fv~~--~~~eYl~-~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~-~~~--i~i~P~  286 (329)
                      ...+|..+..||++|++.|.+|+++  ++++||. .|...++||||++|+|||++|+++|.|+..++. ...  ....|.
T Consensus       300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~  379 (399)
T 4ddg_A          300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE  379 (399)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT
T ss_pred             HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC
Confidence            4569999999999999999999975  7999999 899999999999999999999999999976652 111  123443


Q ss_pred             CCCCCCeEEEEecCCCccccccc
Q 020231          287 VEKIKRAICLSFWAEVHYNSIFS  309 (329)
Q Consensus       287 ~~~~~~~I~Lsy~~g~HYdSV~~  309 (329)
                        ...+.|+|.| +.+|||.||+
T Consensus       380 --~~~~~I~LLY-rPgHYDiLY~  399 (399)
T 4ddg_A          380 --GSEPKVYLLY-RPGHYDILYK  399 (399)
T ss_dssp             --TCCCCCEEEE-ETBEEEEEEC
T ss_pred             --CCCCEEEEEE-cCCccccCCC
Confidence              3467899998 6789999986

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.59  E-value=3e-07  Score=89.70  Aligned_cols=127  Identities=20%  Similarity=0.380  Sum_probs=88.7

Q ss_pred             cEEEEecCCCChHHHHHHHhHhcCCccHHHHHHHHHHHHhcCcc-cc-----------cccc-------c----ccHHHH
Q 020231          186 FVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPE-MY-----------EGYV-------P----MEYSEY  242 (329)
Q Consensus       186 L~v~~V~GDGNCLFRALS~qL~g~~~~H~~VR~~vV~yL~~n~d-~f-----------~~fv-------~----~~~~eY  242 (329)
                      |....+.||||||.+|+|..++|-++....+|+.+.+-|++... .|           ..|+       +    .+|+.-
T Consensus       112 L~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~I  191 (390)
T 3dkb_A          112 LVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNL  191 (390)
T ss_dssp             EEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHH
T ss_pred             eEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHH
Confidence            66778999999999999999999999999999999999887642 11           1222       1    245544


Q ss_pred             HHhhcCCC------C---CCchHHHHHHHHhhCCcEEEEEcC--CC---c-eE--E----EEcC----CCCCCCCeEEEE
Q 020231          243 LKKMSMSG------E---WGDHVTLQAAADLFHVKIVVITSF--KD---T-CY--I----EILP----NVEKIKRAICLS  297 (329)
Q Consensus       243 l~~Msk~g------~---WGg~iELqAlA~~y~v~I~V~ss~--~~---~-~~--i----~i~P----~~~~~~~~I~Ls  297 (329)
                      +..-+...      .   ==-++-+.++|++++|||+|+...  ++   . .+  +    .|.|    .....+.||.|+
T Consensus       192 v~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~Lg  271 (390)
T 3dkb_A          192 IKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLG  271 (390)
T ss_dssp             HHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEE
T ss_pred             HHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEE
Confidence            44333221      1   123677899999999999999532  11   1 11  1    1333    334567899999


Q ss_pred             ecCCCcccccccCCCC
Q 020231          298 FWAEVHYNSIFSQDDR  313 (329)
Q Consensus       298 y~~g~HYdSV~~~~d~  313 (329)
                      |.+ +||.+|++.++.
T Consensus       272 Y~s-~HFsaLV~me~~  286 (390)
T 3dkb_A          272 YDS-HHFVPLVTLKDS  286 (390)
T ss_dssp             ECS-SCEEEEEEBCSS
T ss_pred             ecc-CceeeeeecccC
Confidence            965 899999998754

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.49  E-value=5.7e-07  Score=89.01  Aligned_cols=128  Identities=13%  Similarity=0.196  Sum_probs=93.4

Q ss_pred             CcEEEEecCCCChHHHHHHHhHhcCCccHHHHHHHHHHHHhcCccccc----------------ccc--cc----cHHHH
Q 020231          185 GFVEHKVQGDGNCQFRALSDQLYHTPEHHKSVRQQIVTQLKSHPEMYE----------------GYV--PM----EYSEY  242 (329)
Q Consensus       185 GL~v~~V~GDGNCLFRALS~qL~g~~~~H~~VR~~vV~yL~~n~d~f~----------------~fv--~~----~~~eY  242 (329)
                      .|......||||||.+|+|..++|.++....||+.+.+-|++....|.                .|.  ++    +|+.-
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i  267 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI  267 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred             ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence            366678999999999999999999999999999999998887533221                232  22    44455


Q ss_pred             HHhhcCCCCCCchHHHHHHHHhhCCcEEEEEcCCCceE-------E----EEcCC----CCCCCCeEEEEecCCCccccc
Q 020231          243 LKKMSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCY-------I----EILPN----VEKIKRAICLSFWAEVHYNSI  307 (329)
Q Consensus       243 l~~Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~-------i----~i~P~----~~~~~~~I~Lsy~~g~HYdSV  307 (329)
                      +..-+.+|.=--++-+.++|+++++||+|+...--..+       +    .|.|-    ......||.|+|.+ .||.+|
T Consensus       268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~-gHFsaL  346 (454)
T 3zrh_A          268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHFSAL  346 (454)
T ss_dssp             HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET-TEEEEE
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc-cceeee
Confidence            55556677666778899999999999999974221000       1    13342    23457899999975 799999


Q ss_pred             ccCCCC
Q 020231          308 FSQDDR  313 (329)
Q Consensus       308 ~~~~d~  313 (329)
                      ++.+..
T Consensus       347 V~~~~~  352 (454)
T 3zrh_A          347 VAMEND  352 (454)
T ss_dssp             EEBCCC
T ss_pred             eecccc
Confidence            998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	329
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	3e-08

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 217 RQQIVTQLKSHPEMYEGYVPMEYS---EYLKKMSMSGEWGDHVTLQAAADLFHVKIVVIT 273
           R      +++  + +  ++  E         ++       DH+ + A +    + + V  
Sbjct: 130 RLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEY 189

Query: 274 SFKDTCYIEILPNVEKIKRAICLSFWAEVHYNSIFSQD 311
             +    +      E    ++ L +    HYN +++ D
Sbjct: 190 VDEMDTALNHHVFPEAATPSVYLLY-KTSHYNILYAAD 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	329
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.84

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.5e-21  Score=174.18  Aligned_cols=96  Identities=13%  Similarity=0.251  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhcCccccccccc--ccHHHHHHh-hcCCCCCCchHHHHHHHHhhCCcEEEEEcCCCceEEEEcCCCCCCC
Q 020231          215 SVRQQIVTQLKSHPEMYEGYVP--MEYSEYLKK-MSMSGEWGDHVTLQAAADLFHVKIVVITSFKDTCYIEILPNVEKIK  291 (329)
Q Consensus       215 ~VR~~vV~yL~~n~d~f~~fv~--~~~~eYl~~-Msk~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~i~i~P~~~~~~  291 (329)
                      .+|..++.||++|++.|.+|++  +++++||.+ |.+.++|||++||+|+|++|+++|.|+..++....+..........
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~  207 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAAT  207 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSS
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCC
Confidence            5799999999999999999995  479999986 8999999999999999999999999998877654332222223456


Q ss_pred             CeEEEEecCCCcccccccCC
Q 020231          292 RAICLSFWAEVHYNSIFSQD  311 (329)
Q Consensus       292 ~~I~Lsy~~g~HYdSV~~~~  311 (329)
                      ++|+|.| .++|||+|||.+
T Consensus       208 ~~I~Lly-~pgHYdiLY~~~  226 (228)
T d1tffa_         208 PSVYLLY-KTSHYNILYAAD  226 (228)
T ss_dssp             CSEEEEE-ETTEEEEEEECC
T ss_pred             CEEEEEe-CCCCcccCccCC
Confidence            7899998 568999999875