Citrus Sinensis ID: 020266
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 328 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S9N9 | 344 | Cinnamoyl-CoA reductase 1 | no | no | 0.963 | 0.918 | 0.498 | 1e-77 | |
| Q500U8 | 326 | Tetraketide alpha-pyrone | no | no | 0.963 | 0.969 | 0.462 | 2e-73 | |
| Q9SAH9 | 332 | Cinnamoyl-CoA reductase 2 | no | no | 0.948 | 0.936 | 0.478 | 2e-72 | |
| Q9CA28 | 321 | Tetraketide alpha-pyrone | no | no | 0.951 | 0.971 | 0.406 | 8e-63 | |
| Q9XES5 | 348 | Bifunctional dihydroflavo | N/A | no | 0.951 | 0.896 | 0.398 | 2e-61 | |
| Q84KP0 | 347 | Bifunctional dihydroflavo | N/A | no | 0.951 | 0.899 | 0.392 | 1e-60 | |
| P51104 | 360 | Dihydroflavonol-4-reducta | N/A | no | 0.948 | 0.863 | 0.406 | 2e-60 | |
| P51110 | 337 | Dihydroflavonol-4-reducta | no | no | 0.969 | 0.943 | 0.385 | 4e-60 | |
| P51103 | 364 | Dihydroflavonol-4-reducta | N/A | no | 0.957 | 0.862 | 0.402 | 2e-57 | |
| P51102 | 382 | Dihydroflavonol-4-reducta | no | no | 0.957 | 0.821 | 0.386 | 4e-57 |
| >sp|Q9S9N9|CCR1_ARATH Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 290 bits (741), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 162/325 (49%), Positives = 224/325 (68%), Gaps = 9/325 (2%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
VA+ AGK VCVTGA GYIASW+VK+LL RGYTVK +VR+P+DPK T HL L+G ERL
Sbjct: 5 VASPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLI 63
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
L KA+L + + + +DGCDGV HTASP DP+ ++++PAV G V+N+ A+
Sbjct: 64 LCKADLQDYEALKAAIDGCDGVFHTASPV---TDDPE-QMVEPAVNGAKFVINAAAE-AK 118
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
+KRVV+TSS+ AV R P+ VVDE+ +SD + CK ++ WY K +AE AAW+ AK
Sbjct: 119 VKRVVITSSIGAVY-MDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAK 177
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYPNVTFGWVNVKDVANAHIQ 242
EK +DLV +NP +V+GP LQPT+N S VL + G A+TY N+T +V+V+DVA AH+
Sbjct: 178 EKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVL 237
Query: 243 AFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDK-PHVPTYQVLKEKVKN 301
+E PSA+GRY L E H E+V I+ +L+P + LP KC D+K P Y+ +K+K+
Sbjct: 238 VYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKD 297
Query: 302 LGIEFIPVEVSLKETIESLKEKGFV 326
LG+EF + SL +T++SL+EKG +
Sbjct: 298 LGLEFTSTKQSLYDTVKSLQEKGHL 322
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Involved in the latter stages of lignin biosynthesis. Catalyzes one of the last steps of monolignol biosynthesis, the conversion of cinnamoyl-CoAs into their corresponding cinnamaldehydes. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 4EC: 4 |
| >sp|Q500U8|TKPR1_ARATH Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/322 (46%), Positives = 210/322 (65%), Gaps = 6/322 (1%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
A GKV CVTGASG++ASWLVK LL GY V +VRDP + KK HL L+GA ERL+L K
Sbjct: 4 AKGKV-CVTGASGFLASWLVKRLLLEGYEVIGTVRDPGNEKKLAHLWKLEGAKERLRLVK 62
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
A+L+EEGSFD+ + GC GV HTASP +P+ E+L PA++GTLNVL SC K PS+KR
Sbjct: 63 ADLMEEGSFDNAIMGCQGVFHTASPVLKPTSNPEEEILRPAIEGTLNVLRSCRKNPSLKR 122
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
VVLTSS + V P + +DE+ ++ E+CK+ ++WY LSKTLAE AAWKF++E
Sbjct: 123 VVLTSSSSTV-RIRDDFDPKIPLDESIWTSVELCKRFQVWYALSKTLAEQAAWKFSEENG 181
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--AQTYPNVTFGWVNVKDVANAHIQAF 244
IDLVT+ P+ ++GP L P L ++A+ VL L+KG + + G+V++ DVA HI F
Sbjct: 182 IDLVTVLPSFLVGPSLPPDLCSTASDVLGLLKGETEKFQWHGQMGYVHIDDVARTHIVVF 241
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGI 304
E +A GRY V E+V+ + YP+ +P++ +K + Y K+++LG+
Sbjct: 242 EHEAAQGRYICSSNVISLEELVSFLSARYPSLPIPKRF--EKLNRLHYDFDTSKIQSLGL 299
Query: 305 EFIPVEVSLKETIESLKEKGFV 326
+F +E + I SL E+G++
Sbjct: 300 KFKSLEEMFDDCIASLVEQGYL 321
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Involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine). Is essential for pollen wall development. Acts on tetraketide alpha-pyrones and reduces the carbonyl function on the tetraketide alkyl chain to a secondary alcohol function. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SAH9|CCR2_ARATH Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (696), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/320 (47%), Positives = 212/320 (66%), Gaps = 9/320 (2%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GK+VCVTGA GYIASW+VKLLL RGYTV+ +VR+P DPK HL L GA ERL L A+
Sbjct: 5 GKLVCVTGAGGYIASWIVKLLLERGYTVRGTVRNPTDPK-NNHLRELQGAKERLTLHSAD 63
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
LL+ + + +DGCDGV HTASP DP+ +L+PAV G V+++ AK +KRVV
Sbjct: 64 LLDYEALCATIDGCDGVFHTASPM---TDDPET-MLEPAVNGAKFVIDAAAK-AKVKRVV 118
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
TSS+ AV R +VDE +SD + CK ++ WY K LAE +AW+ AK K +D
Sbjct: 119 FTSSIGAVY-MNPNRDTQAIVDENCWSDLDFCKNTKNWYCYGKMLAEQSAWETAKAKGVD 177
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYPNVTFGWVNVKDVANAHIQAFEVP 247
LV +NP +V+GP LQ +N S +L + G A+TY N+T +V+V+DVA H+ +E P
Sbjct: 178 LVVLNPVLVLGPPLQSAINASLVHILKYLTGSAKTYANLTQVYVDVRDVALGHVLVYEAP 237
Query: 248 SANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDK-PHVPTYQVLKEKVKNLGIEF 306
SA+GRY L E H E+V I+ + +P + LP KC+D+K P Y+ +K+K+LG+EF
Sbjct: 238 SASGRYILAETALHRGEVVEILAKFFPEYPLPTKCSDEKNPRAKPYKFTTQKIKDLGLEF 297
Query: 307 IPVEVSLKETIESLKEKGFV 326
P++ SL E+++SL+EKG +
Sbjct: 298 KPIKQSLYESVKSLQEKGHL 317
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Cinnamoyl-CoA reductase probably involved in the formation of phenolic compounds associated with the hypersensitive response. Seems not to be involved in lignin biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9CA28|TKPR2_ARATH Tetraketide alpha-pyrone reductase 2 OS=Arabidopsis thaliana GN=TKPR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (614), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 195/317 (61%), Gaps = 5/317 (1%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
VTG +G+IAS+++K LL G+TV+ +VR+P D +K L GA +RL++ +A+L EG
Sbjct: 6 VTGGTGFIASYIIKSLLELGHTVRTTVRNPRDEEKVGFLWEFQGAKQRLKILQADLTVEG 65
Query: 74 SFDSIVDGCDGVCHTASP-FYHDAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTS 131
SFD V+G DGV HTASP + Q L+DP +KGT NV++SCAK ++KR+VLTS
Sbjct: 66 SFDEAVNGVDGVFHTASPVLVPQDHNIQETLVDPIIKGTTNVMSSCAKSKATLKRIVLTS 125
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S +++ T ++E+ +SDPE CK+ LWY +KTL E AW+ A+EK +DLV
Sbjct: 126 SCSSIRYRFDA-TEASPLNESHWSDPEYCKRFNLWYGYAKTLGEREAWRIAEEKGLDLVV 184
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
+NP+ V+GPLL P ++ +L++ KG A YPN T G+V++ DV AH+ A E P A+
Sbjct: 185 VNPSFVVGPLLGPKPTSTLLMILAIAKGLAGEYPNFTVGFVHIDDVVAAHVLAMEEPKAS 244
Query: 251 GRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGI-EFIPV 309
GR V+H+SEI+ ++R YP + KC++ + + + K+ LG F +
Sbjct: 245 GRIICSSSVAHWSEIIELMRNKYPNYPFENKCSNKEGDNSPHSMDTRKIHELGFGSFKSL 304
Query: 310 EVSLKETIESLKEKGFV 326
+ I S ++KG +
Sbjct: 305 PEMFDDCIISFQKKGLL 321
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May be involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine). Acts on tetraketide alpha-pyrones and reduces the carbonyl function on the tetraketide alkyl chain to a secondary alcohol function. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9XES5|DFRA_MALDO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 195/321 (60%), Gaps = 9/321 (2%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VCVTGASG+I SWLV LL GYTV+A+VRDP + KK +HLL L A L L+KA+L +
Sbjct: 8 VCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTLWKADLAD 67
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
EGSFD + GC GV H A+P ++KDP+ E++ P + G L++L +C K +++++V TS
Sbjct: 68 EGSFDEAIQGCSGVFHVATPMDFESKDPENEVIKPTINGLLDILKACQKAKTVRKLVFTS 127
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL--W-YPLSKTLAEDAAWKFAKEKSID 188
S A +N + + P V DE+ +SD E C+ ++ W Y +SKTLAE AAWK+AKE +ID
Sbjct: 128 S-AGTVNVEEHQKP--VYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKENNID 184
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLS-LIKGAQTYPNVTFG-WVNVKDVANAHIQAFEV 246
+TI P +VIGP L P++ S LS +++ Y + G +V++ D+ +HI +E
Sbjct: 185 FITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLSHIYLYEH 244
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEF 306
P A GRY + E+V ++RE YP + +P K ++ +K++ +G EF
Sbjct: 245 PKAEGRYICSSHDATIHELVKMLREKYPEYNIPTKFKGIDDNLEPVHFSSKKLREIGFEF 304
Query: 307 -IPVEVSLKETIESLKEKGFV 326
+E +++ + KG +
Sbjct: 305 KYSLEDMFVGAVDACRAKGLI 325
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Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, dihydrokaempferol, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), naringenin to a low extent (10%), but not 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate. Malus domestica (taxid: 3750) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 4 |
| >sp|Q84KP0|DFRA_PYRCO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/321 (39%), Positives = 195/321 (60%), Gaps = 9/321 (2%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VCVTGASG+I SWLV LL GYTV+A+VRDP + KK +HLL L A L L+KA+L +
Sbjct: 8 VCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTLWKADLAD 67
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
EGSFD + GC GV H A+P +++DP+ E++ P + G L++L +C K +++++V TS
Sbjct: 68 EGSFDEAIQGCSGVFHVATPMDFESRDPENEVIKPTINGLLDILKACQKAKTVRKLVFTS 127
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL--W-YPLSKTLAEDAAWKFAKEKSID 188
S A +N + + P V DE+ +SD E C+ ++ W Y +SKTLAE AAWK+AKE +ID
Sbjct: 128 S-AGTVNVEEHQKP--VYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKENNID 184
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLS-LIKGAQTYPNVTFG-WVNVKDVANAHIQAFEV 246
+TI P +VIGP L P++ S LS +++ Y + G +V++ D+ +HI ++
Sbjct: 185 FITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLSHIYLYKH 244
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEF 306
P A GRY + E+V ++RE YP + +P K ++ +K++ +G EF
Sbjct: 245 PKAEGRYICSSHDATIHELVKMLREKYPEYNIPTKFKGIDDNLEPVHFSSKKLREIGFEF 304
Query: 307 -IPVEVSLKETIESLKEKGFV 326
+E +++ + KG +
Sbjct: 305 KYSLEDMFVGAVDACRAKGLI 325
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Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), dihydrokaempferol to a low extent (5%), but not naringenin, 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate. Pyrus communis (taxid: 23211) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 4 |
| >sp|P51104|DFRA_DIACA Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 198/327 (60%), Gaps = 16/327 (4%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
G+ VCVTGASG+I SWL+ LL RGYTV+A+VRDP++ KK +HLL L A L L+KA+
Sbjct: 22 GETVCVTGASGFIGSWLIMRLLERGYTVRATVRDPDNTKKVQHLLDLPNAKTNLTLWKAD 81
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
L EEGSFD+ VDGC GV H A+P ++KDP+ E++ P + G L++L SC K ++RVV
Sbjct: 82 LHEEGSFDAAVDGCTGVFHIATPMDFESKDPENEMIKPTINGMLDILKSCVK-AKLRRVV 140
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL--W-YPLSKTLAEDAAWKFAKEK 185
TSS +N + P V DET +S + + ++ W Y +SK LAE AAWK+A E
Sbjct: 141 FTSS-GGTVNVEATQKP--VYDETCWSALDFIRSVKMTGWMYFVSKILAEQAAWKYAAEN 197
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT-YPNVTFG-WVNVKDVANAHIQA 243
+++ ++I P +V+GP + P++ S LS I ++ Y + G +V++ D+ +HI
Sbjct: 198 NLEFISIIPPLVVGPFIMPSMPPSLITALSPITRTESHYTIIKQGQFVHLDDLCMSHIFL 257
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLG 303
+E P ANGRY + +I ++RE YP + +P K D K + Q +K+ +LG
Sbjct: 258 YENPKANGRYIASACAATIYDIAKMLREEYPEYNVPTKFKDYKEDMGQVQFSSKKLTDLG 317
Query: 304 IEFIPVEVSLKE----TIESLKEKGFV 326
EF + LK+ +ES + KG +
Sbjct: 318 FEF---KYGLKDMYTAAVESCRAKGLL 341
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Dianthus caryophyllus (taxid: 3570) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|P51110|DFRA_VITVI Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (590), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 195/327 (59%), Gaps = 9/327 (2%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
+ + VCVTGASG+I SWLV LL R TV+A+VRDP + KK +HLL L A L L+
Sbjct: 2 GSQSETVCVTGASGFIGSWLVMRLLERRLTVRATVRDPTNVKKVKHLLDLPKAETHLTLW 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
KA+L +EGSFD + GC GV H A+P ++KDP+ E++ P ++G L ++ SCA +++
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVR 121
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL--W-YPLSKTLAEDAAWKFA 182
R+V TSS A +N + + P V DE+ +SD E C+ ++ W Y +SKTLAE AAWK+A
Sbjct: 122 RLVFTSS-AGTVNIQEHQLP--VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYA 178
Query: 183 KEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF--GWVNVKDVANAH 240
KE +ID +TI P +V+GP + ++ S LS I G + + ++ +V++ D+ NAH
Sbjct: 179 KENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAH 238
Query: 241 IQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVK 300
I FE P A GRY ++ ++RE YP + +P + ++ + +K+
Sbjct: 239 IYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLT 298
Query: 301 NLGIEF-IPVEVSLKETIESLKEKGFV 326
+LG EF +E +++ + KG +
Sbjct: 299 DLGFEFKYSLEDMFTGAVDTCRAKGLL 325
|
Vitis vinifera (taxid: 29760) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|P51103|DFRA_CALCH Dihydroflavonol-4-reductase OS=Callistephus chinensis GN=F PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 202/323 (62%), Gaps = 9/323 (2%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VCVTGA+G+I SWLV LL RGY V+A+VR+P D KK +HLL L A L L+KA+L +
Sbjct: 9 VCVTGAAGFIGSWLVMRLLERGYIVRATVRNPGDMKKVKHLLELPKAETNLTLWKADLTQ 68
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
EGSFD ++GC GV H A+P ++KDP+ E++ P ++G L+++ SCAK ++K++V TS
Sbjct: 69 EGSFDEAIEGCHGVFHVATPMDFESKDPENEIIKPTIEGILSIIRSCAKAKTVKKLVYTS 128
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEV--CKQSELW-YPLSKTLAEDAAWKFAKEKSID 188
S A +N + + P V DE+ +SD + K+ W Y +SKTLAE AA + AKE +ID
Sbjct: 129 S-AGTVNVQETQLP--VYDESHWSDLDFIYSKKMTAWMYFVSKTLAEKAAMEAAKENNID 185
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV--TFGWVNVKDVANAHIQAFEV 246
V+I P +V+GP + PT S LSLI GA+++ ++ +V++ D+ HI +E
Sbjct: 186 FVSIIPPLVVGPFINPTFPPSLITALSLINGAESHYSIIKQGQYVHLDDLCECHIFLYEN 245
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEF 306
P A GRY ++ + ++ +I++ +P + +P + A +PT +K+ ++G +F
Sbjct: 246 PEAKGRYICSKQDATIHQLARMIKQKWPEYHVPTQFAGIDEELPTVSFSSKKLIDMGFKF 305
Query: 307 -IPVEVSLKETIESLKEKGFVDF 328
+E K I+S KEKGF+ +
Sbjct: 306 KYDLEDMFKGAIDSCKEKGFLPY 328
|
Callistephus chinensis (taxid: 13379) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|P51102|DFRA_ARATH Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 191/323 (59%), Gaps = 9/323 (2%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+ VCVTGASG+I SWLV LL RGY V+A+VRDP + KK +HLL L A L L+KA+L
Sbjct: 6 ETVCVTGASGFIGSWLVMRLLERGYFVRATVRDPGNLKKVQHLLDLPNAKTLLTLWKADL 65
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
EEGS+D ++GCDGV H A+P ++KDP+ E++ P V G L ++ +C K +++R V
Sbjct: 66 SEEGSYDDAINGCDGVFHVATPMDFESKDPENEVIKPTVNGMLGIMKACVKAKTVRRFVF 125
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPE--VCKQSELW-YPLSKTLAEDAAWKFAKEKS 186
TSS A +N + + V DE +SD E + K+ W Y +SKTLAE AAW FA+EK
Sbjct: 126 TSS-AGTVNVEEHQKN--VYDENDWSDLEFIMSKKMTGWMYFVSKTLAEKAAWDFAEEKG 182
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLS-LIKGAQTYPNVTFG-WVNVKDVANAHIQAF 244
+D ++I P +V+GP + ++ S LS + + Y + G +V++ D+ NAHI +
Sbjct: 183 LDFISIIPTLVVGPFITTSMPPSLITALSPITRNEAHYSIIRQGQYVHLDDLCNAHIFLY 242
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGI 304
E +A GRY + I +R YP + +P ++ + + +K+ ++G
Sbjct: 243 EQAAAKGRYICSSHDATILTISKFLRPKYPEYNVPSTFEGVDENLKSIEFSSKKLTDMGF 302
Query: 305 EF-IPVEVSLKETIESLKEKGFV 326
F +E E+IE+ ++KGF+
Sbjct: 303 NFKYSLEEMFIESIETCRQKGFL 325
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 328 | ||||||
| 224106191 | 325 | cinnamoyl CoA reductase-like protein [Po | 0.990 | 1.0 | 0.824 | 1e-160 | |
| 2981475 | 325 | putative cinnamyl alcohol dehydrogenase | 0.990 | 1.0 | 0.821 | 1e-159 | |
| 224054972 | 325 | cinnamoyl CoA reductase-like protein [Po | 0.990 | 1.0 | 0.815 | 1e-158 | |
| 82568689 | 325 | Cinnamyl alcohol dehydrogenase [Prunus m | 0.990 | 1.0 | 0.818 | 1e-158 | |
| 270055150 | 322 | phenylacetaldehyde reductase [Rosa x dam | 0.978 | 0.996 | 0.813 | 1e-156 | |
| 428135577 | 325 | cinnamyl alcohol dehydrogenase 1 [Pyrus | 0.990 | 1.0 | 0.803 | 1e-155 | |
| 255544904 | 402 | cinnamoyl-CoA reductase, putative [Ricin | 0.990 | 0.808 | 0.797 | 1e-154 | |
| 297847514 | 796 | hypothetical protein ARALYDRAFT_314503 [ | 0.972 | 0.400 | 0.777 | 1e-153 | |
| 408777393 | 326 | cinnamyl alcohol dehydrogenase [Punica g | 0.981 | 0.987 | 0.785 | 1e-153 | |
| 12325359 | 809 | cinnamyl alcohol dehydrogenase, putative | 0.972 | 0.394 | 0.780 | 1e-153 |
| >gi|224106191|ref|XP_002314079.1| cinnamoyl CoA reductase-like protein [Populus trichocarpa] gi|222850487|gb|EEE88034.1| cinnamoyl CoA reductase-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 268/325 (82%), Positives = 299/325 (92%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
+++ AGK+VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT HL AL+GA ERLQ
Sbjct: 1 MSSGAGKIVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTEHLRALNGAQERLQ 60
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
LFKANLLEEGSFDSIV+GC+GV HTASPFYHD KDPQVELLDPAVKGTLNVL SCAK PS
Sbjct: 61 LFKANLLEEGSFDSIVEGCEGVFHTASPFYHDVKDPQVELLDPAVKGTLNVLGSCAKHPS 120
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
I+RVVLTSS+AAV GKPRTPDVVVDETWFSDP +C++S++WY LSKTLAEDAAWKFAK
Sbjct: 121 IRRVVLTSSVAAVAYNGKPRTPDVVVDETWFSDPNLCRESKVWYVLSKTLAEDAAWKFAK 180
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243
EK +D+V INPAMVIGPLLQPTLNTSAAA+LSLIKGAQT+PN +FGW+NVKDVANAHIQA
Sbjct: 181 EKDMDMVAINPAMVIGPLLQPTLNTSAAAILSLIKGAQTFPNASFGWINVKDVANAHIQA 240
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLG 303
FE+ SA+GRYCLVERV+HYSE+V I+ ELYP QLPEKCADDKP+VP YQV KEK K+LG
Sbjct: 241 FELSSASGRYCLVERVAHYSEVVKILHELYPDLQLPEKCADDKPYVPIYQVSKEKAKSLG 300
Query: 304 IEFIPVEVSLKETIESLKEKGFVDF 328
+EFIP+E S+KET+ESLKEKGFV F
Sbjct: 301 VEFIPLEASVKETVESLKEKGFVSF 325
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2981475|gb|AAC06319.1| putative cinnamyl alcohol dehydrogenase [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 267/325 (82%), Positives = 299/325 (92%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
+++ AGKVVCVTGASGYIASWLVKLLL RGYTVKAS+RDPNDP KT HL ALDGA +RLQ
Sbjct: 1 MSSGAGKVVCVTGASGYIASWLVKLLLQRGYTVKASIRDPNDPTKTEHLHALDGAQDRLQ 60
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
LFKANLLEEGSFDS V+GC+GV HTASPFYHD DP+ ELL+PAVKGTLNVLNSCAK PS
Sbjct: 61 LFKANLLEEGSFDSAVEGCEGVFHTASPFYHDVTDPKAELLEPAVKGTLNVLNSCAKSPS 120
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
IKRVVLTSS+AAV GKPRTPDVVVDETWF+DP+VCK+S+LWY LSKTLAEDAAWKF K
Sbjct: 121 IKRVVLTSSIAAVAYNGKPRTPDVVVDETWFTDPDVCKESKLWYVLSKTLAEDAAWKFVK 180
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243
EK IDLVTINPAMVIGPLLQPTLNTSAAAVL++IKGA+T+PN +FGW+NVKDVANAHIQA
Sbjct: 181 EKGIDLVTINPAMVIGPLLQPTLNTSAAAVLNVIKGARTFPNASFGWINVKDVANAHIQA 240
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLG 303
FE P+A+GRYCLVERV+H+SE+V I+RELYP QLPEKCADDKP VPTYQV KEK K+LG
Sbjct: 241 FERPTASGRYCLVERVAHFSEVVRILRELYPTLQLPEKCADDKPFVPTYQVSKEKAKSLG 300
Query: 304 IEFIPVEVSLKETIESLKEKGFVDF 328
+EFIP++VSLKET+ESLKEKGFV+F
Sbjct: 301 VEFIPLDVSLKETVESLKEKGFVNF 325
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054972|ref|XP_002298395.1| cinnamoyl CoA reductase-like protein [Populus trichocarpa] gi|222845653|gb|EEE83200.1| cinnamoyl CoA reductase-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 265/325 (81%), Positives = 296/325 (91%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
++ AGK+VCVTGASGYIASW+VKLLLSRGYTVKASVRDPNDPKKT+HL AL GA ERL+
Sbjct: 1 MSTGAGKIVCVTGASGYIASWIVKLLLSRGYTVKASVRDPNDPKKTQHLRALRGAQERLE 60
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
L KANLLEEGSFDSIV+GC+GV HTASPFYHD KDPQ ELLDPAVKGTLNVL SCA+ PS
Sbjct: 61 LVKANLLEEGSFDSIVEGCEGVFHTASPFYHDVKDPQAELLDPAVKGTLNVLGSCARHPS 120
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
IKRVVLTSSMAAV KPRTPDVVVDETWFSDPE+C++S+LWY LSKTLAEDAAWKFAK
Sbjct: 121 IKRVVLTSSMAAVAYNRKPRTPDVVVDETWFSDPELCRESKLWYVLSKTLAEDAAWKFAK 180
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243
EK +D+V INP+MVIGPLLQPTLNTSAAA+LSLIKGAQT+ N +FGW+NVKDVANAHIQA
Sbjct: 181 EKGMDMVAINPSMVIGPLLQPTLNTSAAAILSLIKGAQTFSNASFGWINVKDVANAHIQA 240
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLG 303
FE+ SA+GRYCLVERV+H+SE+V I+RELYP QLPEKCADDKP+VP YQV KEK K+LG
Sbjct: 241 FELSSASGRYCLVERVAHHSEVVKILRELYPDLQLPEKCADDKPYVPIYQVSKEKAKSLG 300
Query: 304 IEFIPVEVSLKETIESLKEKGFVDF 328
IEFIP+E S+KET+ESLKEKGFV F
Sbjct: 301 IEFIPLEASIKETVESLKEKGFVSF 325
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|82568689|dbj|BAE48658.1| Cinnamyl alcohol dehydrogenase [Prunus mume] | Back alignment and taxonomy information |
|---|
Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust.
Identities = 266/325 (81%), Positives = 294/325 (90%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
+++ AGKVVCVTGASGYIASWLVKLLL GYTVKASVRDPNDP KT HLL LDGA ERLQ
Sbjct: 1 MSSGAGKVVCVTGASGYIASWLVKLLLQGGYTVKASVRDPNDPTKTEHLLGLDGAQERLQ 60
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
LFKANLLEEGSFDS VDGC+GV HTASPFYHD DP+ ELLDPAVKGTLNVLNSCAK S
Sbjct: 61 LFKANLLEEGSFDSAVDGCEGVFHTASPFYHDVTDPKAELLDPAVKGTLNVLNSCAKSQS 120
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
I+RVVLTSS+AAV GKPRTPDVVVDETWF+D + CK+S+LWY LSKTLAEDAAWKF K
Sbjct: 121 IRRVVLTSSIAAVAYNGKPRTPDVVVDETWFTDADFCKESKLWYVLSKTLAEDAAWKFVK 180
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243
EK ID+VTINPAMVIGPLLQPTLNTSAAAVL++IKGA+T+PN +FGW+NVKDVANAHIQA
Sbjct: 181 EKGIDMVTINPAMVIGPLLQPTLNTSAAAVLNVIKGARTFPNASFGWINVKDVANAHIQA 240
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLG 303
FE+PSA+GRYCLVERV+H+SE+V I++ELYP QLPEKCADDKP VPTYQV KEK K LG
Sbjct: 241 FEIPSASGRYCLVERVAHFSEVVRILQELYPGLQLPEKCADDKPFVPTYQVSKEKAKKLG 300
Query: 304 IEFIPVEVSLKETIESLKEKGFVDF 328
+EFIP+EVSLKET+ESLKEK FVDF
Sbjct: 301 VEFIPLEVSLKETVESLKEKNFVDF 325
|
Source: Prunus mume Species: Prunus mume Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|270055150|dbj|BAG13450.2| phenylacetaldehyde reductase [Rosa x damascena] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/321 (81%), Positives = 293/321 (91%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+ KVVCVTGASGYIASWLVKLLL RGYTVKASVR+PNDP KT HLLALDGA ERLQLFKA
Sbjct: 2 SNKVVCVTGASGYIASWLVKLLLQRGYTVKASVRNPNDPTKTEHLLALDGAKERLQLFKA 61
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+LLEEGSFDS V+GC+GV HTASPFYHD DP+ ELLDPAVKGTLNVLNSC+K PSIKRV
Sbjct: 62 DLLEEGSFDSAVEGCEGVFHTASPFYHDVTDPKAELLDPAVKGTLNVLNSCSKSPSIKRV 121
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
VLTSS+AAV GKPRTPDVVVDETWF+DP+VCK+S+LWY LSKTLAEDAAWKF KEK I
Sbjct: 122 VLTSSIAAVAYNGKPRTPDVVVDETWFTDPDVCKESKLWYVLSKTLAEDAAWKFVKEKGI 181
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247
D+VTINPAMVIGPLLQPTLNTSAAA+L++IKGA+TYPN +FGW+NVKDVANAH+QAFE+P
Sbjct: 182 DMVTINPAMVIGPLLQPTLNTSAAAILNIIKGARTYPNASFGWINVKDVANAHVQAFEIP 241
Query: 248 SANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEFI 307
SA+GRYCLVERV+H++E++ II ELYP QLPEKC+DDKP VPTYQV KEK K+LGIEFI
Sbjct: 242 SASGRYCLVERVAHFTEVLQIIHELYPDLQLPEKCSDDKPFVPTYQVSKEKAKSLGIEFI 301
Query: 308 PVEVSLKETIESLKEKGFVDF 328
P+++SLKETIESLKEK V F
Sbjct: 302 PLDISLKETIESLKEKSIVSF 322
|
Source: Rosa x damascena Species: Rosa x damascena Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|428135577|gb|AFY97683.1| cinnamyl alcohol dehydrogenase 1 [Pyrus pyrifolia] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust.
Identities = 261/325 (80%), Positives = 293/325 (90%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
+++ AGKVVCVTGASGYIASWLVKLLL RGYTVKAS+RDPNDP KT HL ALDGA +RLQ
Sbjct: 1 MSSGAGKVVCVTGASGYIASWLVKLLLQRGYTVKASIRDPNDPTKTEHLHALDGAQDRLQ 60
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
LFKANLLEEGSFDS V+GC+GV HTASPFYHD DP+ ELL+PAVKGTLNVLNSCAK PS
Sbjct: 61 LFKANLLEEGSFDSAVEGCEGVFHTASPFYHDVTDPKAELLEPAVKGTLNVLNSCAKSPS 120
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
IK VVLTSS+AAV GKPRTPDVV+DETWF+DP+VCK+S+LWY LSKTLAEDAAWKF K
Sbjct: 121 IKGVVLTSSIAAVAYNGKPRTPDVVIDETWFTDPDVCKESKLWYVLSKTLAEDAAWKFVK 180
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243
EK IDLVTINPAMVIGPLLQPTLNTSAAAVL++IKGA+T+PN + GW+NVKDV NAHIQA
Sbjct: 181 EKGIDLVTINPAMVIGPLLQPTLNTSAAAVLNVIKGARTFPNASSGWINVKDVTNAHIQA 240
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLG 303
FE P+A GRYCLVE V+H+SE+V I+RELYP QLP+KCADDKP VPTYQV KEK K+LG
Sbjct: 241 FESPTAGGRYCLVETVAHFSEVVRILRELYPTLQLPDKCADDKPFVPTYQVSKEKAKSLG 300
Query: 304 IEFIPVEVSLKETIESLKEKGFVDF 328
+EFIP++VSLKET+ESLKEKGFV F
Sbjct: 301 VEFIPLDVSLKETVESLKEKGFVSF 325
|
Source: Pyrus pyrifolia Species: Pyrus pyrifolia Genus: Pyrus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255544904|ref|XP_002513513.1| cinnamoyl-CoA reductase, putative [Ricinus communis] gi|223547421|gb|EEF48916.1| cinnamoyl-CoA reductase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/326 (79%), Positives = 292/326 (89%), Gaps = 1/326 (0%)
Query: 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERL 62
S + GK VCVTGASGYIASW+VK LL RGYTVKASVRDPNDP+KT HL +LDGA ERL
Sbjct: 78 SSDSGEGKTVCVTGASGYIASWIVKFLLQRGYTVKASVRDPNDPRKTEHLRSLDGAEERL 137
Query: 63 QLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP 122
QLFKA+LLEEGSFD+ V+GC GV HTASPFYHD DPQ EL+DPAVKGTLNVLNSCAK P
Sbjct: 138 QLFKADLLEEGSFDAAVEGCRGVFHTASPFYHDITDPQ-ELIDPAVKGTLNVLNSCAKTP 196
Query: 123 SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFA 182
S+KRVVLTSS+AAV GKPRTP+VVVDETWFSDP+ C++S+LWY +SKTLAEDAAWKFA
Sbjct: 197 SVKRVVLTSSIAAVAYNGKPRTPEVVVDETWFSDPDFCRESKLWYVVSKTLAEDAAWKFA 256
Query: 183 KEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQ 242
KEK +DLV INPAMV+GPLLQPTLNTSAAAVLSL+KGA T+PN +FGWVNVKDVANAHIQ
Sbjct: 257 KEKGLDLVAINPAMVVGPLLQPTLNTSAAAVLSLLKGANTFPNASFGWVNVKDVANAHIQ 316
Query: 243 AFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNL 302
AFE+PSA+GR+CLVERV+HYSE+VNI RELYP FQ PEKCAD+KP+VPTYQV KEK K L
Sbjct: 317 AFEIPSASGRHCLVERVAHYSEVVNITRELYPDFQFPEKCADEKPYVPTYQVSKEKAKGL 376
Query: 303 GIEFIPVEVSLKETIESLKEKGFVDF 328
GI+FIP+ VSLKET+ESLKEKGF+ F
Sbjct: 377 GIDFIPLNVSLKETVESLKEKGFIIF 402
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297847514|ref|XP_002891638.1| hypothetical protein ARALYDRAFT_314503 [Arabidopsis lyrata subsp. lyrata] gi|297337480|gb|EFH67897.1| hypothetical protein ARALYDRAFT_314503 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 248/319 (77%), Positives = 289/319 (90%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K VCVTGASGYIASW+VKLLL RGYTVKASVRDPNDP+KT HLLAL+GA ERL+LFKANL
Sbjct: 478 KTVCVTGASGYIASWIVKLLLLRGYTVKASVRDPNDPRKTEHLLALEGAEERLKLFKANL 537
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
LEEGSFDS +DGC+GV HTASPFYHD KDPQ EL+DPAVKGT+NVL+SC K S+KRVVL
Sbjct: 538 LEEGSFDSAIDGCEGVFHTASPFYHDVKDPQAELIDPAVKGTINVLSSCLKTSSVKRVVL 597
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
TSS+AAV G PRTP+ +VDETWF+DP+ C+ S+LWY LSKTLAE+AAWKFAKE + L
Sbjct: 598 TSSIAAVAFNGMPRTPETIVDETWFADPDYCRASKLWYVLSKTLAENAAWKFAKENDLQL 657
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA 249
V+INPAMVIGPLLQPTLNTSAAAVLSLIKGAQT+PN TFGWVNVKDVANAHIQAFE P+A
Sbjct: 658 VSINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTFPNATFGWVNVKDVANAHIQAFENPTA 717
Query: 250 NGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEFIPV 309
+GRYCLVERV+HYSE+VNI+ +LYP FQLPEKCAD+K ++PTY+V KEK ++LG+EF+P+
Sbjct: 718 DGRYCLVERVAHYSEVVNILHDLYPDFQLPEKCADEKIYIPTYKVSKEKAESLGVEFVPL 777
Query: 310 EVSLKETIESLKEKGFVDF 328
EVS+KET+ESL++KGF+ F
Sbjct: 778 EVSIKETVESLRDKGFIRF 796
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|408777393|gb|AFU90744.1| cinnamyl alcohol dehydrogenase [Punica granatum] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 253/322 (78%), Positives = 288/322 (89%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
AGK+VCVTGASGYIASWLVKLLL RGYTVKASVRDPNDP+KT HL +LDGA ERLQL+K
Sbjct: 5 GAGKIVCVTGASGYIASWLVKLLLQRGYTVKASVRDPNDPRKTEHLFSLDGAKERLQLYK 64
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
ANLLEEGSFD IVDGC GV HTASPFYHD KDP+ EL+DPA+KGTLNVL SCAK SI+R
Sbjct: 65 ANLLEEGSFDPIVDGCAGVFHTASPFYHDVKDPEAELIDPALKGTLNVLKSCAKVSSIQR 124
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
VVLTSS+AAV GKPRTPDVVVDETWFS PE C+++++WY LSKTLAEDAAWKF KEK
Sbjct: 125 VVLTSSVAAVAYNGKPRTPDVVVDETWFSSPEFCRENKMWYVLSKTLAEDAAWKFVKEKG 184
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246
ID+V INPAMVIGPLLQPTLNTSAAA+L++I GA+T+PN +FGWVNVKDVANAH+QAFE+
Sbjct: 185 IDMVAINPAMVIGPLLQPTLNTSAAAILNIINGAETFPNASFGWVNVKDVANAHVQAFEI 244
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEF 306
PSA+GR+CLVERV+HYSE+V I+RELYP +LPEKCADDKP VPTYQV KEK K+LGI++
Sbjct: 245 PSASGRHCLVERVAHYSEVVKILRELYPQIKLPEKCADDKPFVPTYQVSKEKAKSLGIDY 304
Query: 307 IPVEVSLKETIESLKEKGFVDF 328
IP+E +KET+ESLKEKGF F
Sbjct: 305 IPLEQGIKETVESLKEKGFATF 326
|
Source: Punica granatum Species: Punica granatum Genus: Punica Family: Lythraceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12325359|gb|AAG52618.1|AC024261_5 cinnamyl alcohol dehydrogenase, putative; 82967-79323 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 249/319 (78%), Positives = 289/319 (90%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K VCVTGASGYIASW+VKLLL RGYTVKASVRDPNDP+KT HLLAL+GA ERL+LFKANL
Sbjct: 491 KTVCVTGASGYIASWIVKLLLLRGYTVKASVRDPNDPRKTEHLLALEGAEERLKLFKANL 550
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
LEEGSFDS +DGC+GV HTASPFYHD KDPQ ELLDPAVKGT+NVL+SC K S+KRVVL
Sbjct: 551 LEEGSFDSAIDGCEGVFHTASPFYHDVKDPQAELLDPAVKGTINVLSSCLKTSSVKRVVL 610
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
TSS+AAV G PRTP+ +VDETWF+DP+ C+ S+LWY LSKTLAE+AAWKFAKE ++ L
Sbjct: 611 TSSIAAVAFNGMPRTPETIVDETWFADPDYCRASKLWYVLSKTLAENAAWKFAKENNLQL 670
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA 249
V+INPAMVIGPLLQPTLNTSAAAVLSLIKGAQT+PN TFGWVNVKDVANAHIQAFE P A
Sbjct: 671 VSINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTFPNATFGWVNVKDVANAHIQAFENPDA 730
Query: 250 NGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEFIPV 309
+GRYCLVERV+HYSE+VNI+ +LYP FQLPEKCAD+K ++PTY+V KEK ++LG+EF+P+
Sbjct: 731 DGRYCLVERVAHYSEVVNILHDLYPDFQLPEKCADEKIYIPTYKVSKEKAESLGVEFVPL 790
Query: 310 EVSLKETIESLKEKGFVDF 328
EVS+KET+ESL++KGF+ F
Sbjct: 791 EVSIKETVESLRDKGFIRF 809
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 328 | ||||||
| TAIR|locus:2150315 | 326 | AT5G19440 [Arabidopsis thalian | 0.975 | 0.981 | 0.790 | 6.3e-140 | |
| TAIR|locus:2033904 | 325 | AT1G51410 [Arabidopsis thalian | 0.972 | 0.981 | 0.780 | 9.2e-139 | |
| TAIR|locus:2012315 | 322 | AT1G09510 [Arabidopsis thalian | 0.975 | 0.993 | 0.586 | 2e-95 | |
| TAIR|locus:2012250 | 369 | AT1G09480 [Arabidopsis thalian | 0.960 | 0.853 | 0.571 | 2.1e-93 | |
| TAIR|locus:2012265 | 322 | AT1G09490 [Arabidopsis thalian | 0.960 | 0.978 | 0.565 | 9e-93 | |
| TAIR|locus:2012280 | 325 | AT1G09500 [Arabidopsis thalian | 0.978 | 0.987 | 0.561 | 1.5e-90 | |
| TAIR|locus:2033394 | 319 | AT1G66800 [Arabidopsis thalian | 0.948 | 0.974 | 0.555 | 3.7e-87 | |
| TAIR|locus:2200427 | 344 | CCR1 "cinnamoyl coa reductase | 0.957 | 0.912 | 0.501 | 3.7e-80 | |
| TAIR|locus:2025832 | 332 | CCR2 "cinnamoyl coa reductase" | 0.939 | 0.927 | 0.482 | 2.7e-75 | |
| TAIR|locus:2171258 | 324 | AT5G58490 [Arabidopsis thalian | 0.957 | 0.969 | 0.478 | 6.5e-74 |
| TAIR|locus:2150315 AT5G19440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1369 (487.0 bits), Expect = 6.3e-140, P = 6.3e-140
Identities = 253/320 (79%), Positives = 292/320 (91%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GKVVCVTGASGYIASWLVK LLSRGYTVKASVRDP+DPKKT+HL++L+GA ERL LFKA+
Sbjct: 7 GKVVCVTGASGYIASWLVKFLLSRGYTVKASVRDPSDPKKTQHLVSLEGAKERLHLFKAD 66
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
LLE+GSFDS +DGC GV HTASPF++DAKDPQ EL+DPAVKGTLNVLNSCAK S+KRVV
Sbjct: 67 LLEQGSFDSAIDGCHGVFHTASPFFNDAKDPQAELIDPAVKGTLNVLNSCAKASSVKRVV 126
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
+TSSMAAV GKPRTPDV VDETWFSDPE+C+ S++WY LSKTLAEDAAWK AKEK +D
Sbjct: 127 VTSSMAAVGYNGKPRTPDVTVDETWFSDPELCEASKMWYVLSKTLAEDAAWKLAKEKGLD 186
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
+VTINPAMVIGPLLQPTLNTSAAA+L+LI GA+T+PN++FGWVNVKDVANAHIQAFEVPS
Sbjct: 187 IVTINPAMVIGPLLQPTLNTSAAAILNLINGAKTFPNLSFGWVNVKDVANAHIQAFEVPS 246
Query: 249 ANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEFIP 308
ANGRYCLVERV H+SEIVNI+RELYP LPE+C D+ P+VPTYQV K+K ++LGI++IP
Sbjct: 247 ANGRYCLVERVVHHSEIVNILRELYPNLPLPERCVDENPYVPTYQVSKDKTRSLGIDYIP 306
Query: 309 VEVSLKETIESLKEKGFVDF 328
++VS+KET+ESLKEKGF F
Sbjct: 307 LKVSIKETVESLKEKGFAQF 326
|
|
| TAIR|locus:2033904 AT1G51410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1358 (483.1 bits), Expect = 9.2e-139, P = 9.2e-139
Identities = 249/319 (78%), Positives = 289/319 (90%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K VCVTGASGYIASW+VKLLL RGYTVKASVRDPNDP+KT HLLAL+GA ERL+LFKANL
Sbjct: 7 KTVCVTGASGYIASWIVKLLLLRGYTVKASVRDPNDPRKTEHLLALEGAEERLKLFKANL 66
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
LEEGSFDS +DGC+GV HTASPFYHD KDPQ ELLDPAVKGT+NVL+SC K S+KRVVL
Sbjct: 67 LEEGSFDSAIDGCEGVFHTASPFYHDVKDPQAELLDPAVKGTINVLSSCLKTSSVKRVVL 126
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
TSS+AAV G PRTP+ +VDETWF+DP+ C+ S+LWY LSKTLAE+AAWKFAKE ++ L
Sbjct: 127 TSSIAAVAFNGMPRTPETIVDETWFADPDYCRASKLWYVLSKTLAENAAWKFAKENNLQL 186
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA 249
V+INPAMVIGPLLQPTLNTSAAAVLSLIKGAQT+PN TFGWVNVKDVANAHIQAFE P A
Sbjct: 187 VSINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTFPNATFGWVNVKDVANAHIQAFENPDA 246
Query: 250 NGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEFIPV 309
+GRYCLVERV+HYSE+VNI+ +LYP FQLPEKCAD+K ++PTY+V KEK ++LG+EF+P+
Sbjct: 247 DGRYCLVERVAHYSEVVNILHDLYPDFQLPEKCADEKIYIPTYKVSKEKAESLGVEFVPL 306
Query: 310 EVSLKETIESLKEKGFVDF 328
EVS+KET+ESL++KGF+ F
Sbjct: 307 EVSIKETVESLRDKGFIRF 325
|
|
| TAIR|locus:2012315 AT1G09510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
Identities = 189/322 (58%), Positives = 237/322 (73%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
A GK+VCVTGASGY+ASW+VKLLL RGYTV+A+VRDP+D KKT HLLALDGA E+L+LF
Sbjct: 2 ADGGKMVCVTGASGYVASWIVKLLLLRGYTVRATVRDPSDEKKTEHLLALDGAKEKLKLF 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
KA+LLEEGSF+ ++GCD V HTASP DPQ+EL+DPAVKGTLNVL +CAK S+K
Sbjct: 62 KADLLEEGSFEQAIEGCDAVFHTASPVSLTVTDPQIELIDPAVKGTLNVLKTCAKVSSVK 121
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
RV++TSSMAAVL P+ +VDE+ FSDP C + +LWY LSKTLAED AW+FAKEK
Sbjct: 122 RVIVTSSMAAVLFREPTLGPNDLVDESCFSDPNFCTEKKLWYALSKTLAEDEAWRFAKEK 181
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245
+DLV INP +V+GPLL+P+L S ++ LI G + N F V+V+DVA AHI+AFE
Sbjct: 182 GLDLVVINPGLVLGPLLKPSLTFSVNVIVELITGKDNFINKDFRLVDVRDVALAHIKAFE 241
Query: 246 VPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPT-YQVLKEKVKNLGI 304
PSANGRY + V ++I I+RE +P L K + +P Y++ EKVK+LGI
Sbjct: 242 TPSANGRYIIEGPVVTINDIEKILREFFPDLNLGNK-GEASEIIPVIYKLCVEKVKSLGI 300
Query: 305 EFIPVEVSLKETIESLKEKGFV 326
EF P E +L++TI SLKEK V
Sbjct: 301 EFTPTEATLRDTILSLKEKCLV 322
|
|
| TAIR|locus:2012250 AT1G09480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 180/315 (57%), Positives = 234/315 (74%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GK+VCVTGASGYIASW+VKLLL RGYTVKA+VRD D KKT HLLALDGA ERL+LFKA+
Sbjct: 52 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKAD 111
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
LLEE SF+ ++GCD V HTASP + KDPQ EL+DPA+KGT+NVLN+C + PS++RV+
Sbjct: 112 LLEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTMNVLNTCKETPSVRRVI 171
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
LTSS AAVL P VVDET+FSDP +C++++ WYPLSK LAE+AAW+FAK+ ID
Sbjct: 172 LTSSTAAVLFRQPPVEASDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDNGID 231
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
+V +NP + GPLLQPTLN S ++ I G + + + +V+V+DVA AHI+A E PS
Sbjct: 232 MVVLNPGFIFGPLLQPTLNFSVELIVDFINGKNPFNSRFYRFVDVRDVALAHIKALETPS 291
Query: 249 ANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEFIP 308
ANGRY + + S+I++I+REL P + + + + +V EKVKNLG+EF P
Sbjct: 292 ANGRYIIDGPIMSVSDIIDILRELLPDLCIADTNEESVMNEMLCKVCVEKVKNLGVEFTP 351
Query: 309 VEVSLKETIESLKEK 323
++ SL++TI SLKEK
Sbjct: 352 MKSSLRDTIVSLKEK 366
|
|
| TAIR|locus:2012265 AT1G09490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 178/315 (56%), Positives = 231/315 (73%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GKVVCVTGASGYIASW+VKLLL RGYTV A+VRDP D KKT HLLALDGA ERL+LFKA+
Sbjct: 5 GKVVCVTGASGYIASWIVKLLLLRGYTVNATVRDPKDKKKTEHLLALDGAKERLKLFKAD 64
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
LLEE SFD +DGCD V HTASP DPQ EL+DPA+KGT+NVLN+C + S+KRV+
Sbjct: 65 LLEESSFDQAIDGCDAVFHTASPVLFTVTDPQTELIDPALKGTINVLNTCKQVSSVKRVI 124
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
LTSS AAVL+ P P+ +VDET+FSDP +C++++ WY LSK LAE+AAW+FAK+ ID
Sbjct: 125 LTSSTAAVLSRQPPIGPNDLVDETFFSDPSLCRETKNWYSLSKILAENAAWQFAKDNGID 184
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
+V +NP + GPLLQPTLN S ++ I G + + + +V+DVA HI+A E PS
Sbjct: 185 MVVLNPGFICGPLLQPTLNMSVELIVDFINGKNPFNKRYYRFSDVRDVALVHIKALETPS 244
Query: 249 ANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEFIP 308
ANGRY + ++I++I+R+L+P + + + + + QV EKVKNLG+EF P
Sbjct: 245 ANGRYIIDGPNMSVNDIIDILRKLFPDLSIADTNEESEMNEMICQVCVEKVKNLGVEFTP 304
Query: 309 VEVSLKETIESLKEK 323
++ SL++TI SLKEK
Sbjct: 305 MKSSLRDTIVSLKEK 319
|
|
| TAIR|locus:2012280 AT1G09500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 182/324 (56%), Positives = 235/324 (72%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
A GKVVCVTGASGYIASW+VKLLL RGYT+ A+VRDP D KKT HLLALDGA ERL+LF
Sbjct: 2 ADGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLF 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAK-DPQVELLDPAVKGTLNVLNSCAKFPSI 124
KA+LL+EGSF+ +DGC+ V HTASP K DPQVEL++PAV GT+NVL +C K S+
Sbjct: 62 KADLLDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSV 121
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
KRV+LTSSMAAVL P+ VVDET+F++P ++ + WY LSKTLAEDAAW+FAK+
Sbjct: 122 KRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKD 181
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF 244
IDL+ +NP +V GP+LQPTLN S A ++ L+KG + +V+V+DVA AH++A
Sbjct: 182 NEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKAL 241
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCAD-DKPHVPTYQVLKEKVKNLG 303
E PSANGRY + V +I N++RE +P + ++ D + + T+ V +KVK+LG
Sbjct: 242 ETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKSLG 301
Query: 304 I-EFIPVEVSLKETIESLKEKGFV 326
I EF P E SL++T+ SLKEK V
Sbjct: 302 IIEFTPTETSLRDTVLSLKEKCLV 325
|
|
| TAIR|locus:2033394 AT1G66800 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 175/315 (55%), Positives = 228/315 (72%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GKVVCVTGASGYIASW+VKLLL RGYTV+A+VR+P D KKT HLL L+GASERL+LFK++
Sbjct: 5 GKVVCVTGASGYIASWIVKLLLLRGYTVRATVRNPMDTKKTNHLLTLEGASERLKLFKSD 64
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
LLEEGSFD ++GCDGV HTASP DPQ E++DPAV GTLNVL +CAK S+KRV+
Sbjct: 65 LLEEGSFDQAIEGCDGVFHTASPVSLTVTDPQTEMIDPAVNGTLNVLRTCAKVSSVKRVI 124
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
+TSS AA L+ P+ VVDET F+D V + WY SKTLAE+ AW+FAKE ID
Sbjct: 125 VTSSTAATLSIN----PNDVVDETVFTDLSVYLAMKAWYGYSKTLAEETAWRFAKENGID 180
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
LV +NP VIGP+LQPTLN S ++ LI G + + +++V+DV+ AHI+AFEVPS
Sbjct: 181 LVVMNPGNVIGPVLQPTLNYSVEVIVDLINGKNPSNSFYYRFMDVRDVSLAHIKAFEVPS 240
Query: 249 ANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEFIP 308
A+GRY L + +I ++ EL+P +K +++ Y+V +K+K+LGIEF P
Sbjct: 241 ASGRYILADPDVTMKDIQKLLHELFPDLCRVDKDNENEVGEMAYKVCVDKLKSLGIEFTP 300
Query: 309 VEVSLKETIESLKEK 323
++ SLK+T+ SLKE+
Sbjct: 301 IKESLKDTVVSLKER 315
|
|
| TAIR|locus:2200427 CCR1 "cinnamoyl coa reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 162/323 (50%), Positives = 223/323 (69%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
VA+ AGK VCVTGA GYIASW+VK+LL RGYTVK +VR+P+DPK T HL L+G ERL
Sbjct: 5 VASPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLI 63
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
L KA+L + + + +DGCDGV HTASP DP+ ++++PAV G V+N+ A+
Sbjct: 64 LCKADLQDYEALKAAIDGCDGVFHTASPV---TDDPE-QMVEPAVNGAKFVINAAAE-AK 118
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
+KRVV+TSS+ AV R P+ VVDE+ +SD + CK ++ WY K +AE AAW+ AK
Sbjct: 119 VKRVVITSSIGAVYMDPN-RDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAK 177
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYPNVTFGWVNVKDVANAHIQ 242
EK +DLV +NP +V+GP LQPT+N S VL + G A+TY N+T +V+V+DVA AH+
Sbjct: 178 EKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVL 237
Query: 243 AFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDK-PHVPTYQVLKEKVKN 301
+E PSA+GRY L E H E+V I+ +L+P + LP KC D+K P Y+ +K+K+
Sbjct: 238 VYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKD 297
Query: 302 LGIEFIPVEVSLKETIESLKEKG 324
LG+EF + SL +T++SL+EKG
Sbjct: 298 LGLEFTSTKQSLYDTVKSLQEKG 320
|
|
| TAIR|locus:2025832 CCR2 "cinnamoyl coa reductase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 154/319 (48%), Positives = 213/319 (66%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GK+VCVTGA GYIASW+VKLLL RGYTV+ +VR+P DPK HL L GA ERL L A+
Sbjct: 5 GKLVCVTGAGGYIASWIVKLLLERGYTVRGTVRNPTDPKNN-HLRELQGAKERLTLHSAD 63
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
LL+ + + +DGCDGV HTASP DP+ +L+PAV G V+++ AK +KRVV
Sbjct: 64 LLDYEALCATIDGCDGVFHTASPM---TDDPET-MLEPAVNGAKFVIDAAAK-AKVKRVV 118
Query: 129 LTSSMAAV-LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
TSS+ AV +N R +VDE +SD + CK ++ WY K LAE +AW+ AK K +
Sbjct: 119 FTSSIGAVYMNPN--RDTQAIVDENCWSDLDFCKNTKNWYCYGKMLAEQSAWETAKAKGV 176
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYPNVTFGWVNVKDVANAHIQAFEV 246
DLV +NP +V+GP LQ +N S +L + G A+TY N+T +V+V+DVA H+ +E
Sbjct: 177 DLVVLNPVLVLGPPLQSAINASLVHILKYLTGSAKTYANLTQVYVDVRDVALGHVLVYEA 236
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDK-PHVPTYQVLKEKVKNLGIE 305
PSA+GRY L E H E+V I+ + +P + LP KC+D+K P Y+ +K+K+LG+E
Sbjct: 237 PSASGRYILAETALHRGEVVEILAKFFPEYPLPTKCSDEKNPRAKPYKFTTQKIKDLGLE 296
Query: 306 FIPVEVSLKETIESLKEKG 324
F P++ SL E+++SL+EKG
Sbjct: 297 FKPIKQSLYESVKSLQEKG 315
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| TAIR|locus:2171258 AT5G58490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 153/320 (47%), Positives = 221/320 (69%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+VVCVTGASG I SWLV LL RGY+V A+V++ D K+T+HL L+GA+ RL LF+ +L
Sbjct: 7 EVVCVTGASGCIGSWLVHQLLLRGYSVHATVKNLQDEKETKHLEGLEGAATRLHLFEMDL 66
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
L+ + + ++GC GV H ASP D +DPQ +LLDPAVKGT+NVL + AK S+KRVV
Sbjct: 67 LQYDTVSAAINGCSGVFHLASPCIVDEVQDPQKQLLDPAVKGTINVLTA-AKEASVKRVV 125
Query: 129 LTSSMAAVLNTGKPRTP-DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+TSS++A+ T P P D + +E ++ + C+Q+ LWYPLSKTLAE AAW+FA+EK +
Sbjct: 126 VTSSISAI--TPSPNWPADKIKNEECWAAEDYCRQNGLWYPLSKTLAEKAAWEFAEEKGL 183
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEV 246
D+V +NP V+GP++ P+LN S +L L++G +TY N G V+ KDVA AHI +E
Sbjct: 184 DVVVVNPGTVMGPVIPPSLNASMHMLLRLLQGCTETYENFFMGSVHFKDVALAHILVYED 243
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEF 306
P + GR+ VE +SHY + V + ELYP + +P+ + +P + + +K+ +LG++F
Sbjct: 244 PYSKGRHLCVEAISHYGDFVAKVAELYPNYNVPKLPRETQPGLLRDKNASKKLIDLGLKF 303
Query: 307 IPVEVSLKETIESLKEKGFV 326
I +E +KE +ESLK KGF+
Sbjct: 304 ISMEEIIKEGVESLKSKGFI 323
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | CCRL4 | cinnamoyl CoA reductase-like protein (EC-1.1.1.195) (326 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | CYP703A4 | cytochrome P450 (487 aa) | • | 0.690 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 328 | |||
| PLN02662 | 322 | PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase | 0.0 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 1e-148 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 1e-132 | |
| PLN02989 | 325 | PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase | 1e-125 | |
| PLN02214 | 342 | PLN02214, PLN02214, cinnamoyl-CoA reductase | 1e-100 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 3e-85 | |
| PLN02650 | 351 | PLN02650, PLN02650, dihydroflavonol-4-reductase | 1e-83 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 9e-78 | |
| PLN00198 | 338 | PLN00198, PLN00198, anthocyanidin reductase; Provi | 4e-72 | |
| PLN02896 | 353 | PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | 1e-70 | |
| PLN02583 | 297 | PLN02583, PLN02583, cinnamoyl-CoA reductase | 5e-52 | |
| PLN02686 | 367 | PLN02686, PLN02686, cinnamoyl-CoA reductase | 4e-42 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 6e-39 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 5e-34 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 7e-27 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 1e-19 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 4e-18 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 6e-17 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 2e-15 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 6e-15 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 3e-14 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 5e-14 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 7e-13 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 5e-11 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 1e-10 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 4e-10 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 8e-09 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 1e-07 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 1e-07 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 1e-07 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 2e-07 | |
| cd05251 | 242 | cd05251, NmrA_like_SDR_a, NmrA (a transcriptional | 3e-07 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 4e-07 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 8e-07 | |
| cd05244 | 207 | cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu | 2e-06 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 4e-06 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 6e-06 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 6e-06 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 7e-06 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 1e-05 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-05 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 2e-05 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 3e-05 | |
| cd05269 | 272 | cd05269, TMR_SDR_a, triphenylmethane reductase (TM | 4e-05 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 4e-05 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 4e-05 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 5e-05 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 6e-05 | |
| PLN00141 | 251 | PLN00141, PLN00141, Tic62-NAD(P)-related group II | 8e-05 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 8e-05 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 1e-04 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 2e-04 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 2e-04 | |
| cd05266 | 251 | cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | 3e-04 | |
| cd05280 | 325 | cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ | 3e-04 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 4e-04 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 4e-04 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 4e-04 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 5e-04 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 8e-04 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 0.001 | |
| PLN02657 | 390 | PLN02657, PLN02657, 3,8-divinyl protochlorophyllid | 0.001 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 0.001 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 0.001 | |
| COG2910 | 211 | COG2910, COG2910, Putative NADH-flavin reductase [ | 0.001 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 0.002 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 0.002 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 0.002 | |
| smart00822 | 180 | smart00822, PKS_KR, This enzymatic domain is part | 0.003 |
| >gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 666 bits (1721), Expect = 0.0
Identities = 260/321 (80%), Positives = 289/321 (90%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
+ GKVVCVTGASGYIASWLVKLLL RGYTVKA+VRDPNDPKKT HLLALDGA ERL LF
Sbjct: 1 SGEGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLF 60
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
KANLLEEGSFDS+VDGC+GV HTASPFYHD DPQ EL+DPAVKGTLNVL SCAK PS+K
Sbjct: 61 KANLLEEGSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK 120
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
RVV+TSSMAAV GKP TPDVVVDETWFSDP C++S+LWY LSKTLAE+AAWKFAKE
Sbjct: 121 RVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKEN 180
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245
ID+VTINPAMVIGPLLQPTLNTSA A+L+LI GAQT+PN ++ WV+V+DVANAHIQAFE
Sbjct: 181 GIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFE 240
Query: 246 VPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE 305
+PSA+GRYCLVERV HYSE+V I+ ELYP QLPEKCADDKP+VPTYQV KEK K+LGIE
Sbjct: 241 IPSASGRYCLVERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEKAKSLGIE 300
Query: 306 FIPVEVSLKETIESLKEKGFV 326
FIP+EVSLK+T+ESLKEKGF+
Sbjct: 301 FIPLEVSLKDTVESLKEKGFL 321
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Length = 322 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 419 bits (1079), Expect = e-148
Identities = 162/293 (55%), Positives = 216/293 (73%), Gaps = 2/293 (0%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VCVTGASG+I SWLVK LL RGYTV+A+VRDP D KK HLL L+GA ERL+LFKA+LL+
Sbjct: 1 VCVTGASGFIGSWLVKRLLQRGYTVRATVRDPGDEKKVAHLLELEGAKERLKLFKADLLD 60
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
GSFD+ +DGCDGV H ASP D++DP+ E+++PAVKGTLNVL +CAK S+KRVV TS
Sbjct: 61 YGSFDAAIDGCDGVFHVASPVDFDSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVVFTS 120
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S+AAV R VVDE+ +SD + CK+++LWY LSKTLAE AAW+FA+E +DLVT
Sbjct: 121 SVAAV-VWNPNRGEGKVVDESCWSDLDFCKKTKLWYALSKTLAEKAAWEFAEENGLDLVT 179
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
+NP++V+GP LQP+LN+S+ +LSL+KG + Y N + V+V DVA+AHI +E PSA+
Sbjct: 180 VNPSLVVGPFLQPSLNSSSQLILSLLKGNAEMYQNGSLALVHVDDVADAHILLYEKPSAS 239
Query: 251 GRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLG 303
GRY V E+ ++ + YP + +P K DD+P V ++ +K+K+LG
Sbjct: 240 GRYICSSHVVTRPELAALLAKKYPQYNIPTKFEDDQPGVARVKLSSKKLKDLG 292
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This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 378 bits (972), Expect = e-132
Identities = 181/317 (57%), Positives = 237/317 (74%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
GK+VCVTGASGYIASW+VKLLL RGYTVKA+VRD D KKT HLLALDGA ERL+LFK
Sbjct: 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFK 62
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
A+LLEE SF+ ++GCD V HTASP + KDPQ EL+DPA+KGT+NVLN+C + PS+KR
Sbjct: 63 ADLLEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKR 122
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
V+LTSS AAVL P + VVDET+FSDP +C++++ WYPLSK LAE+AAW+FAK+
Sbjct: 123 VILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDNG 182
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246
ID+V +NP + GPLLQPTLN S ++ I G + N + +V+V+DVA AHI+A E
Sbjct: 183 IDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVALAHIKALET 242
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEF 306
PSANGRY + + ++I++I+REL+P + + + + + +V EKVKNLG+EF
Sbjct: 243 PSANGRYIIDGPIMSVNDIIDILRELFPDLCIADTNEESEMNEMICKVCVEKVKNLGVEF 302
Query: 307 IPVEVSLKETIESLKEK 323
P++ SL++TI SLKEK
Sbjct: 303 TPMKSSLRDTILSLKEK 319
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Length = 322 |
| >gnl|CDD|178569 PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 360 bits (925), Expect = e-125
Identities = 182/324 (56%), Positives = 235/324 (72%), Gaps = 3/324 (0%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
A GKVVCVTGASGYIASW+VKLLL RGYT+ A+VRDP D KKT HLLALDGA ERL+LF
Sbjct: 2 ADGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLF 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAK-DPQVELLDPAVKGTLNVLNSCAKFPSI 124
KA+LL+EGSF+ +DGC+ V HTASP K DPQVEL++PAV GT+NVL +C K S+
Sbjct: 62 KADLLDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSV 121
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
KRV+LTSSMAAVL P+ VVDET+F++P ++ + WY LSKTLAEDAAW+FAK+
Sbjct: 122 KRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKD 181
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF 244
IDL+ +NP +V GP+LQPTLN S A ++ L+KG + +V+V+DVA AH++A
Sbjct: 182 NEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKAL 241
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCAD-DKPHVPTYQVLKEKVKNLG 303
E PSANGRY + V +I N++RE +P + ++ D + + T+ V +KVK+LG
Sbjct: 242 ETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKSLG 301
Query: 304 I-EFIPVEVSLKETIESLKEKGFV 326
I EF P E SL++T+ SLKEK V
Sbjct: 302 IIEFTPTETSLRDTVLSLKEKCLV 325
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Length = 325 |
| >gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = e-100
Identities = 162/323 (50%), Positives = 223/323 (69%), Gaps = 9/323 (2%)
Query: 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ 63
VA+ AGK VCVTGA GYIASW+VK+LL RGYTVK +VR+P+DPK T HL L+G ERL
Sbjct: 5 VASPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLI 63
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
L KA+L + + + +DGCDGV HTASP DP+ ++++PAV G V+N+ A+
Sbjct: 64 LCKADLQDYEALKAAIDGCDGVFHTASPV---TDDPE-QMVEPAVNGAKFVINAAAE-AK 118
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
+KRVV+TSS+ AV R P+ VVDE+ +SD + CK ++ WY K +AE AAW+ AK
Sbjct: 119 VKRVVITSSIGAVY-MDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAK 177
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYPNVTFGWVNVKDVANAHIQ 242
EK +DLV +NP +V+GP LQPT+N S VL + G A+TY N+T +V+V+DVA AH+
Sbjct: 178 EKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVL 237
Query: 243 AFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDK-PHVPTYQVLKEKVKN 301
+E PSA+GRY L E H E+V I+ +L+P + LP KC D+K P Y+ +K+K+
Sbjct: 238 VYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKD 297
Query: 302 LGIEFIPVEVSLKETIESLKEKG 324
LG+EF + SL +T++SL+EKG
Sbjct: 298 LGLEFTSTKQSLYDTVKSLQEKG 320
|
Length = 342 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 3e-85
Identities = 111/277 (40%), Positives = 161/277 (58%), Gaps = 9/277 (3%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
+V VTGA+G+IAS +V+ LL GY V+ +VR + K + LL G ++RL+ + L
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAKLKALLKAAGYNDRLEFVIVDDL 60
Query: 71 -EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
++D + G D V H ASPF D + +++DPAV+GTLNVL + S+KRVVL
Sbjct: 61 TAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAAGSVKRVVL 120
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW-YPLSKTLAEDAAWKFAKE--KS 186
TSS+AAV + V +E W +D + K + L Y SKTLAE AAW+F KE
Sbjct: 121 TSSVAAVGDPTAEDPGKVFTEEDW-NDLTISKSNGLDAYIASKTLAEKAAWEFVKENKPK 179
Query: 187 IDLVTINPAMVIGPLLQPT-LNTSAAAVLSLIKG--AQTYPNVTFGWVNVKDVANAHIQA 243
+L+TINP V+GP L LN+S + L+ G PN+ FG+V+V+DVA+AH++A
Sbjct: 180 FELITINPGYVLGPSLLADELNSSNELINKLLDGKLPAIPPNLPFGYVDVRDVADAHVRA 239
Query: 244 FEVPSA-NGRYCLVERVSHYSEIVNIIRELYPAFQLP 279
E P A R+ + + EI +++RE +P P
Sbjct: 240 LESPEAAGQRFIVSAGPFSFQEIADLLREEFPQLTAP 276
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Score = 256 bits (655), Expect = 1e-83
Identities = 130/328 (39%), Positives = 201/328 (61%), Gaps = 9/328 (2%)
Query: 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQL 64
+ + VCVTGASG+I SWLV LL RGYTV+A+VRDP + KK +HLL L GA+ RL L
Sbjct: 1 MGSQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTL 60
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+KA+L EGSFD + GC GV H A+P ++KDP+ E++ P V G L+++ +CAK ++
Sbjct: 61 WKADLAVEGSFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTV 120
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL--W-YPLSKTLAEDAAWKF 181
+R+V TSS A +N + + P V DE +SD + C++ ++ W Y +SKTLAE AAWK+
Sbjct: 121 RRIVFTSS-AGTVNVEEHQKP--VYDEDCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKY 177
Query: 182 AKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV--TFGWVNVKDVANA 239
A E +D ++I P +V+GP + ++ S LSLI G + + ++ +V++ D+ NA
Sbjct: 178 AAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHLDDLCNA 237
Query: 240 HIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV 299
HI FE P+A GRY + ++ ++RE YP + +P + + + + +K+
Sbjct: 238 HIFLFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPARFPGIDEDLKSVEFSSKKL 297
Query: 300 KNLGIEF-IPVEVSLKETIESLKEKGFV 326
+LG F +E IE+ +EKG +
Sbjct: 298 TDLGFTFKYSLEDMFDGAIETCREKGLI 325
|
Length = 351 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 9e-78
Identities = 115/281 (40%), Positives = 161/281 (57%), Gaps = 10/281 (3%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTGASG++AS +V+ LL RGY V+A+VRDP+ KK HLL LD RL+L A+L +
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLDLDAKPGRLELAVADLTD 60
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
E SFD ++ GC GV H A+P +KDP E++ PA+ GTLN L + A S+KR VLTS
Sbjct: 61 EQSFDEVIKGCAGVFHVATPVSFSSKDPN-EVIKPAIGGTLNALKAAAAAKSVKRFVLTS 119
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVC--KQSELW-YPLSKTLAEDAAWKFAKEKSID 188
S +V KP +V+DE ++ E + W Y SKTLAE AAWKFA E +ID
Sbjct: 120 SAGSV-LIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFADENNID 178
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV-----TFGWVNVKDVANAHIQA 243
L+T+ P + IG + +S+ +SLI G + +V+V D+ AHI
Sbjct: 179 LITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGYYVHVVDICLAHIGC 238
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCAD 284
E+P A GRY ++ ++ +R+ YP++ P D
Sbjct: 239 LELPIARGRYICTAGNFDWNTLLKTLRKKYPSYTFPTDFPD 279
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 4e-72
Identities = 127/339 (37%), Positives = 191/339 (56%), Gaps = 16/339 (4%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
M+++ K CV G +G++AS L+KLLL +GY V +VRDP + KK HL AL +
Sbjct: 1 MATLTPTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGD 60
Query: 61 RLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
L++F A+L +E SF++ + GCD V H A+P ++DP+ +++ PA++G NVL +CAK
Sbjct: 61 -LKIFGADLTDEESFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAK 119
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE--LW-YPLSKTLAEDA 177
S+KRV+LTSS AAV + K +V++E ++D E + W YP SKTLAE A
Sbjct: 120 AKSVKRVILTSSAAAV-SINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKA 178
Query: 178 AWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------- 229
AWKFA+E +IDL+T+ P ++ GP L + +S + +SLI G + N G
Sbjct: 179 AWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSI 238
Query: 230 -WVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPH 288
+V+DV AHI E SA+GRY + E+ + + YP +Q+P D P
Sbjct: 239 SITHVEDVCRAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQVPTDFG-DFPS 297
Query: 289 VPTYQVLKEKVKNLGIEF-IPVEVSLKETIESLKEKGFV 326
+ EK+ + G F +E +T+E K KG +
Sbjct: 298 KAKLIISSEKLISEGFSFEYGIEEIYDQTVEYFKAKGLL 336
|
Length = 338 |
| >gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 223 bits (569), Expect = 1e-70
Identities = 137/345 (39%), Positives = 199/345 (57%), Gaps = 32/345 (9%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
+A CVTGA+GYI SWLVKLLL RGYTV A++RDP K+ HLL+ +RL+LF
Sbjct: 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPA---KSLHLLSKWKEGDRLRLF 63
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASP--FYHDAKDPQVE------LLDPAVKGTLNVLNS 117
+A+L EEGSFD V GCDGV H A+ F + +E ++DPA+KGTLNVL S
Sbjct: 64 RADLQEEGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKS 123
Query: 118 CAKFPSIKRVVLTSS---MAAVLNTGKPRTPDVVVDETWFS--DPEVCKQSELW-YPLSK 171
C K ++KRVV TSS + A + G+ R VVDET + D ++ W Y LSK
Sbjct: 124 CLKSKTVKRVVFTSSISTLTAKDSNGRWRA---VVDETCQTPIDHVWNTKASGWVYVLSK 180
Query: 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG-AQTYP-----N 225
L E+AA+K+AKE IDLV++ V GP L P++ +S +LS I G ++ + N
Sbjct: 181 LLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVN 240
Query: 226 VTFG---WVNVKDVANAHIQAFEVPSANGRY-CLVERVSHYSEIVNIIRELYPAFQLPEK 281
G V+++D+ +AHI E A GRY C V+ SE++N + + YP + +
Sbjct: 241 SRMGSIALVHIEDICDAHIFLMEQTKAEGRYICCVDSYD-MSELINHLSKEYPCSNIQVR 299
Query: 282 CADDKPHVPTYQVLKEKVKNLGIEF-IPVEVSLKETIESLKEKGF 325
++K ++ +K+++LG E+ +E + +TI+ + GF
Sbjct: 300 LDEEKRGSIPSEISSKKLRDLGFEYKYGIEEIIDQTIDCCVDHGF 344
|
Length = 353 |
| >gnl|CDD|178195 PLN02583, PLN02583, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 5e-52
Identities = 101/281 (35%), Positives = 155/281 (55%), Gaps = 23/281 (8%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
+ K VCV ASGY+ WLVK LLSRGYTV A+V+ + + + + L ERL++F
Sbjct: 4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFD 63
Query: 67 ANLLEEGSFDSIVD---GCDGV-CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP 122
+ L+ + SI+D GC G+ C P + + D + ++D V+ NVL +CA+
Sbjct: 64 VDPLD---YHSILDALKGCSGLFCCFDPPSDYPSYDEK--MVDVEVRAAHNVLEACAQTD 118
Query: 123 SIKRVVLTSSMAAVL--NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWK 180
+I++VV TSS+ AV+ + DV DE +SD C++ +LW+ L+KTL+E AW
Sbjct: 119 TIEKVVFTSSLTAVIWRDDNISTQKDV--DERSWSDQNFCRKFKLWHALAKTLSEKTAWA 176
Query: 181 FAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANA 239
A ++ +++V+IN +++GP L T L KGA Q Y N V+V + +A
Sbjct: 177 LAMDRGVNMVSINAGLLMGPSL-----TQHNPYL---KGAAQMYENGVLVTVDVNFLVDA 228
Query: 240 HIQAFEVPSANGRY-CLVERVSHYSEIVNIIRELYPAFQLP 279
HI+AFE S+ GRY C V+ + V + + L P P
Sbjct: 229 HIRAFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSP 269
|
Length = 297 |
| >gnl|CDD|215370 PLN02686, PLN02686, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 4e-42
Identities = 93/291 (31%), Positives = 137/291 (47%), Gaps = 39/291 (13%)
Query: 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASER--- 61
A A ++VCVTG ++ +V LL GY+V+ +V D +K R + + G R
Sbjct: 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREM-EMFGEMGRSND 107
Query: 62 -LQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA------------- 107
+ ANL E S DGC GV HT++ +DPA
Sbjct: 108 GIWTVMANLTEPESLHEAFDGCAGVFHTSA------------FVDPAGLSGYTKSMAELE 155
Query: 108 VKGTLNVLNSCAKFPSIKRVVLTSSM-AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166
K + NV+ +C + S+++ V TSS+ A V P V+DE +SD C+ ++LW
Sbjct: 156 AKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFCRDNKLW 215
Query: 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT-YPN 225
Y L K AE AAW+ A+ K + L TI PA+V GP +T+ A L KGAQ +
Sbjct: 216 YALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIAYL---KGAQEMLAD 272
Query: 226 VTFGWVNVKDVANAHIQAFEV---PSANGRY-CLVERVSHYSEIVNIIREL 272
+V+ +A AH+ +E +A GRY C VS E + R++
Sbjct: 273 GLLATADVERLAEAHVCVYEAMGNKTAFGRYICFDHVVSREDEAEELARQI 323
|
Length = 367 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 6e-39
Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 25/262 (9%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
VTGA+G++ S LV+ LL++GY V+A VR +D L +++ + +L +
Sbjct: 3 VTGATGFLGSNLVRALLAQGYRVRALVRSGSDAVLLDGL--------PVEVVEGDLTDAA 54
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133
S + + GCD V H A+ AKD + EL V+GT NVL++ + ++RVV TSS+
Sbjct: 55 SLAAAMKGCDRVFHLAAFTSLWAKDRK-ELYRTNVEGTRNVLDAALE-AGVRRVVHTSSI 112
Query: 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTIN 193
AA+ PD +DET + Y SK LAE + A + +D+V +N
Sbjct: 113 AAL-----GGPPDGRIDETTPWNER---PFPNDYYRSKLLAELEVLEAA-AEGLDVVIVN 163
Query: 194 PAMVIGPLLQPTLNTSAAA-VLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251
P+ V GP + TS VL + G YP +V+V+DVA HI A E
Sbjct: 164 PSAVFGPGDEG--PTSTGLDVLDYLNGKLPAYPPGGTSFVDVRDVAEGHIAAMEKGRRGE 221
Query: 252 RYCLV-ERVSHYSEIVNIIREL 272
RY L E +S + ++ + E+
Sbjct: 222 RYILGGENLS-FKQLFETLAEI 242
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 5e-34
Identities = 79/328 (24%), Positives = 128/328 (39%), Gaps = 37/328 (11%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
VTG +G+I S LV+ LL+ G+ V+ R + LD ++ +L +
Sbjct: 5 VTGGAGFIGSHLVERLLAAGHDVRGLDRLRD---------GLDPLLSGVEFVVLDLTDRD 55
Query: 74 SFDSIVDGC-DGVCHTA--SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
D + G D V H A S E LD V GTLN+L + +KR V
Sbjct: 56 LVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVFA 114
Query: 131 SSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLV 190
SS++ V P +DE + Y +SK AE +A+ + +V
Sbjct: 115 SSVSVVYGDPPPL----PIDEDLGPP-----RPLNPYGVSKLAAEQLLRAYARLYGLPVV 165
Query: 191 TINPAMVIGPLLQPTLNTSAAA--VLSLIKGAQTYP-----NVTFGWVNVKDVANAHIQA 243
+ P V GP +P L++ + + L+KG + T +V V DVA+A + A
Sbjct: 166 ILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLA 225
Query: 244 FEVPSANGRYCLVERVSHYS--EIVNIIRELYPAFQLPEKCADDKPHV----PTYQVLKE 297
E P G + + + + E+ + E + + +
Sbjct: 226 LENP-DGGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISK 284
Query: 298 KVKNLGIE-FIPVEVSLKETIESLKEKG 324
LG E + +E L +T+E L +K
Sbjct: 285 ARAALGWEPKVSLEEGLADTLEWLLKKL 312
|
Length = 314 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-27
Identities = 83/247 (33%), Positives = 120/247 (48%), Gaps = 19/247 (7%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
V VTGA+G++ S +V+LLL +G V+ VR +D R+L LD ++ + +L
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDR---RNLEGLDV-----EIVEGDL 52
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
+ S V GC + H A+ + A DP+ E+ V+GT N+L + A ++RVV
Sbjct: 53 RDPASLRKAVAGCRALFHVAADYRLWAPDPE-EMYAANVEGTRNLLRA-ALEAGVERVVY 110
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
TSS+A + R DET S + Y SK LAE AA + A EK + +
Sbjct: 111 TSSVATL----GVRGDGTPADETTPSSLD---DMIGHYKRSKFLAEQAALEMAAEKGLPV 163
Query: 190 VTINPAMVIGPL-LQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
V +NP+ IGP ++PT T V L Y + V+V DVA H+ A E
Sbjct: 164 VIVNPSTPIGPRDIKPT-PTGRIIVDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERGR 222
Query: 249 ANGRYCL 255
RY L
Sbjct: 223 IGERYIL 229
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-19
Identities = 57/251 (22%), Positives = 95/251 (37%), Gaps = 30/251 (11%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S LV+ LL GY V R + + R++ + +L +
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRR---------SESLNTGRIRFHEGDLTD 51
Query: 72 EGSFDSIVDGC--DGVCHTAS-PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
+ + ++ D V H A+ + + + + V GTL +L + + +KR V
Sbjct: 52 PDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAG-VKRFV 110
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
SS + V D + E P S Y +K AE +A+ +
Sbjct: 111 FASS-SEV----YGDVADPPITEDTPLGP----LSP--YAAAKLAAERLVEAYARAYGLR 159
Query: 189 LVTINPAMVIGPLLQPTLNTSA-AAVLSLIKGAQTYPNVTFG-----WVNVKDVANAHIQ 242
V + V GP T A++ I + + G ++ V DVA A +
Sbjct: 160 AVILRLFNVYGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAILL 219
Query: 243 AFEVPSANGRY 253
A E P Y
Sbjct: 220 ALEHPDGGEIY 230
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-18
Identities = 58/250 (23%), Positives = 88/250 (35%), Gaps = 64/250 (25%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S LV+ LL RG+ V R
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDR------------------------------ 30
Query: 72 EGSFDSIVDGCDGVCHTAS----PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
D +V H A+ P D +P E + V GTLN+L + K +KR
Sbjct: 31 ---LDVVV-------HLAALVGVPASWD--NP-DEDFETNVVGTLNLLEAARKA-GVKRF 76
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
V SS + G P + + + Y +SK AE + + +
Sbjct: 77 VYASSASV---YGSP-------EGLPEEEETPPRPLSP-YGVSKLAAEHLLRSYGESYGL 125
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP-----NVTFGWVNVKDVANAHIQ 242
+V + A V GP +P L+ + + N T +++V DV A +
Sbjct: 126 PVVILRLANVYGPGQRPRLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILH 185
Query: 243 AFEVPSANGR 252
A E P G
Sbjct: 186 ALENPLEGGG 195
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 6e-17
Identities = 66/273 (24%), Positives = 101/273 (36%), Gaps = 46/273 (16%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTGA+G+I LV LLSRG V+ +V R+ + + +L +
Sbjct: 2 VLVTGANGFIGRALVDKLLSRGEEVRIAV---------RNAENAEPSVVLAELPDID--- 49
Query: 72 EGSFDSIVDGCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
SF + G D V H A+ H DP + + T + + A +KR
Sbjct: 50 --SFTDLFLGVDAVVHLAA-RVHVMNDQGADPLSDYRKVNTELTRRLARA-AARQGVKRF 105
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
V SS+ G+ T DET P+ Y SK AE A + +
Sbjct: 106 VFLSSVKVN---GEG-TVGAPFDETDPPAPQDA------YGRSKLEAERALLELGASDGM 155
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW-------VNVKDVANAH 240
++V + P MV GP L++ + G V++ ++ +A
Sbjct: 156 EVVILRPPMVYGP-------GVRGNFARLMRLIDRGLPLPPGAVKNRRSLVSLDNLVDAI 208
Query: 241 IQAFEVPSANGRYCLVERVSHYS--EIVNIIRE 271
+P A LV S E+V+ IR
Sbjct: 209 YLCISLPKAANGTFLVSDGPPVSTAELVDEIRR 241
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-15
Identities = 66/245 (26%), Positives = 93/245 (37%), Gaps = 33/245 (13%)
Query: 14 VTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VTG G++ +V+LLL G V+ + + + + ++ +
Sbjct: 2 VTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDF-----SKLQVITYIEGDVTD 56
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+ + G D V HTA+ K + ++ VKGT NVL++C K ++ +V TS
Sbjct: 57 KQDLRRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVK-AGVRVLVYTS 115
Query: 132 SMAAVLNTGKPRTPDVVVDETW-----FSDPEVCKQSELWYPLSKTLAEDAAWK----FA 182
SM V + P V DET DP YP SK LAE K
Sbjct: 116 SMEVVGPNSYGQ-PIVNGDETTPYESTHQDP---------YPESKALAEKLVLKANGSTL 165
Query: 183 KEKSIDL-VTINPAMVIGP---LLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238
K + PA + G L P L L K NV V V +VA
Sbjct: 166 KNGGRLYTCALRPAGIFGEGDPFLFPFLVRLLK--NGLAKFRTGDKNVLSDRVYVGNVAW 223
Query: 239 AHIQA 243
AHI A
Sbjct: 224 AHILA 228
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 6e-15
Identities = 68/251 (27%), Positives = 100/251 (39%), Gaps = 27/251 (10%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTGA G+I S L + LL G+ V+A N L + +R ++ +
Sbjct: 2 VLVTGADGFIGSHLTERLLREGHEVRALD-IYNS--FNSWGLLDNAVHDRFHFISGDVRD 58
Query: 72 EGSFDSIVDGCDGVCHTAS----PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ +V CD V H A+ P+ + P ++ V GTLNVL + KRV
Sbjct: 59 ASEVEYLVKKCDVVFHLAALIAIPYSY--TAPL-SYVETNVFGTLNVLEAACVL-YRKRV 114
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW-YPLSKTLAEDAAWKFAKEKS 186
V TS+ + V T + DV +DE P + Y SK A+ A+ + +
Sbjct: 115 VHTST-SEVYGTAQ----DVPIDE---DHPLLYINKPRSPYSASKQGADRLAYSYGRSFG 166
Query: 187 IDLVTINPAMVIGPLLQ-----PTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHI 241
+ + I P GP PT+ + A LI P T + VKD A I
Sbjct: 167 LPVTIIRPFNTYGPRQSARAVIPTIISQRAIGQRLINLGDGSP--TRDFNFVKDTARGFI 224
Query: 242 QAFEVPSANGR 252
+ A G
Sbjct: 225 DILDAIEAVGE 235
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-14
Identities = 58/277 (20%), Positives = 101/277 (36%), Gaps = 40/277 (14%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL---- 69
VTG +G++ LVK LL G+ V VR + + + ++R+++ + +L
Sbjct: 3 VTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQPN 62
Query: 70 --LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA---VKGTLNVLNSCAKFPSI 124
L + + D V H A+ + D Q D + GT +VL A+
Sbjct: 63 LGLSAAASRELAGKVDHVIHCAASY-----DFQAPNEDAWRTNIDGTEHVLELAARLDIQ 117
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
+ ++++ A G + ET + + K Y SK AE A
Sbjct: 118 RFHYVSTAYVAGNREG-------NIRETELNPGQNFKN---PYEQSKAEAEQLVRAAA-- 165
Query: 185 KSIDLVTINPAMVIGPLLQPTLNT-SAAAVLSLIKGAQTYPNVT------FGWVN---VK 234
I L P++V+G T + L+ +N V
Sbjct: 166 TQIPLTVYRPSIVVGD--SKTGRIEKIDGLYELLNLLAKLGRWLPMPGNKGARLNLVPVD 223
Query: 235 DVANAHIQAFEVPSANGR-YCLVERVS-HYSEIVNII 269
VA+A + + P ANG+ + L + EI ++
Sbjct: 224 YVADAIVYLSKKPEANGQIFHLTDPTPQTLREIADLF 260
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-14
Identities = 56/244 (22%), Positives = 94/244 (38%), Gaps = 53/244 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V V GA+G + +V+ LL RGY V+A VRDP+ +K ++ +L +
Sbjct: 2 VLVVGATGKVGRHVVRELLDRGYQVRALVRDPSQAEKLEA--------AGAEVVVGDLTD 53
Query: 72 EGSFDSIVDGCDGV--CHTASPFYHDAKDP-QVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
S + ++G D V + V+ G +N++++ K +KR V
Sbjct: 54 AESLAAALEGIDAVISAAGSGG--KGGPRTEAVDYD-----GNINLIDAAKKA-GVKRFV 105
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
L SS+ KP P ++ Y +K AED + + +D
Sbjct: 106 LVSSI----GADKPSHP---------------LEALGPYLDAKRKAED----YLRASGLD 142
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
+ P G L T + G T + G ++ DVA +A + P+
Sbjct: 143 YTIVRP----GGLTDDPAGTGRVVLG----GDGTRLD---GPISRADVAEVLAEALDTPA 191
Query: 249 ANGR 252
A G+
Sbjct: 192 AIGK 195
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 7e-13
Identities = 62/244 (25%), Positives = 91/244 (37%), Gaps = 39/244 (15%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVR--DPNDPKKTRHLLALDGASERLQLFKANL 69
V VTG SG+ LVK LL RG VR D P + ++ K ++
Sbjct: 2 VLVTGGSGFFGERLVKQLLERG---GTYVRSFDIAPPGEA----LSAWQHPNIEFLKGDI 54
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA-------VKGTLNVLNSCAKFP 122
+ + + G D V HTA+ V L P V GT NVL++C +
Sbjct: 55 TDRNDVEQALSGADCVFHTAAI---------VPLAGPRDLYWEVNVGGTQNVLDACQRC- 104
Query: 123 SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFA 182
+++ V TSS + + DET P Y +K +AE +
Sbjct: 105 GVQKFVYTSSSSVIFGGQNIHNG----DETLPYPPL----DSDMYAETKAIAEIIVLEAN 156
Query: 183 KEKSIDLVTINPAMVIGP---LLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANA 239
+ + PA + GP L P L A L + N + V ++A+A
Sbjct: 157 GRDDLLTCALRPAGIFGPGDQGLVPILFEWAEKGLVKFVFGR--GNNLVDFTYVHNLAHA 214
Query: 240 HIQA 243
HI A
Sbjct: 215 HILA 218
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-11
Identities = 71/247 (28%), Positives = 107/247 (43%), Gaps = 44/247 (17%)
Query: 12 VCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
V G SG++ LV+ LL RG TV D + T L +S R+Q +L
Sbjct: 2 CLVVGGSGFLGRHLVEQLLRRGNPTVHVF-----DIRPTFEL--DPSSSGRVQFHTGDLT 54
Query: 71 EEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
+ + + G + V HTASP + D ++ V+GT NV+ +C K +K++V
Sbjct: 55 DPQDLEKAFNEKGPNVVFHTASPDHGSNDDLYYKV---NVQGTRNVIEACRK-CGVKKLV 110
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
TSS + V N + DE+ P+ + + Y +K LAE K A +
Sbjct: 111 YTSSASVVFN----GQDIINGDESL-PYPDKHQDA---YNETKALAEKLVLK-ANDPESG 161
Query: 189 LVT--INPAMVIGP---LLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------WVNVKDV 236
L+T + PA + GP L P L L K +T G + V++V
Sbjct: 162 LLTCALRPAGIFGPGDRQLVPGL-------LKAAKNGKT--KFQIGDGNNLFDFTYVENV 212
Query: 237 ANAHIQA 243
A+AHI A
Sbjct: 213 AHAHILA 219
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 74/276 (26%), Positives = 111/276 (40%), Gaps = 58/276 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVR----------DPNDPKKTRHLLALDGASER 61
V VTGA G+I S LV+ L+ +GY V+A V D + P+ ++
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPE----------VKDK 50
Query: 62 LQLFKANLLEEGSFDSIVDGCDGVCHTAS----PFYHDAKDPQVELLDPAVKGTLNVLNS 117
+++ ++ + S + GCD V H A+ P+ + A D V D V GTLNVL +
Sbjct: 51 IEVVTGDIRDPDSVRKAMKGCDVVFHLAALIAIPYSYIAPDSYV---DTNVTGTLNVLQA 107
Query: 118 CAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA 177
+++VV TS+ + V T + V +DE QS Y SK A+
Sbjct: 108 ARDL-GVEKVVHTST-SEVYGTAQ----YVPIDEKHPLQG----QSP--YSASKIGADQL 155
Query: 178 AWKFAKEKSIDLVTINPAMVIGP-----LLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232
A F + + + I P GP + PT+ T A+ IK P F +
Sbjct: 156 ALSFYRSFNTPVTIIRPFNTYGPRQSARAVIPTIITQIASGKRRIKLGSLSPTRDFNY-- 213
Query: 233 VKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNI 268
V D I E G E++NI
Sbjct: 214 VTDTVRGFIAIAESDKTVG------------EVINI 237
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 4e-10
Identities = 74/286 (25%), Positives = 117/286 (40%), Gaps = 58/286 (20%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVK-----ASVRDPNDPKKTRHLLALDGASERLQLFK 66
V VTG +G+I S LV+ LL RG+ V ++ + N P+ ++ +
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEVK----------PNVKFIE 51
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA------VKGTLNVLNSCAK 120
++ ++ + +G D V H A+ +E DP V GTLN+L + K
Sbjct: 52 GDIRDDELVEFAFEGVDYVFHQAA--QASVP-RSIE--DPIKDHEVNVLGTLNLLEAARK 106
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWK 180
+KR V SS + G P P + DE +P S Y +SK E
Sbjct: 107 A-GVKRFVYASSSSVY---GDP--PYLPKDEDHPPNPL----SP--YAVSKYAGELYCQV 154
Query: 181 FAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLS-----LIKGAQTYPNVTFG------ 229
FA+ + V++ V GP P N AAV+ +KG P +G
Sbjct: 155 FARLYGLPTVSLRYFNVYGPRQDP--NGGYAAVIPIFIERALKGE---PPTIYGDGEQTR 209
Query: 230 -WVNVKDVANAHIQAFEVPSANGRY--CLVERVSHYSEIVNIIREL 272
+ V+DV A++ A + Y +R S +E+ +IRE+
Sbjct: 210 DFTYVEDVVEANLLAATAGAGGEVYNIGTGKRTS-VNELAELIREI 254
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 8e-09
Identities = 60/270 (22%), Positives = 100/270 (37%), Gaps = 48/270 (17%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
VV V GA+G+I ++V L RG V R + R L+ D + + +L
Sbjct: 1 MVVTVFGATGFIGRYVVNRLAKRGSQVIVPYRC--EAYARRLLVMGDLGQ--VLFVEFDL 56
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
++ S ++G D V + Y D V+G + + + ++R++
Sbjct: 57 RDDESIRKALEGSDVVINLVGRLYETKNF---SFEDVHVEGPERLAKAAKEAG-VERLIH 112
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
S++ A S Y SK E+A +E +
Sbjct: 113 ISALGA------------------------DANSPSKYLRSKAEGEEA----VREAFPEA 144
Query: 190 VTINPAMVIGPL---LQPTLN-TSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245
+ P++V G L + LI G QT V V DVA A +A +
Sbjct: 145 TIVRPSVVFGREDRFLNRFAKLLAFLPFPPLIGGGQTKFQP----VYVGDVAEAIARALK 200
Query: 246 VPSANGR-YCLV--ERVSHYSEIVNIIREL 272
P G+ Y LV + + +E+V ++R L
Sbjct: 201 DPETEGKTYELVGPKVYT-LAELVELLRRL 229
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 59/246 (23%), Positives = 92/246 (37%), Gaps = 23/246 (9%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKANL 69
V VTG G++ +++LLL R +K V D + + + ++
Sbjct: 1 VCLVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTDIEGDI 60
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
+ G V HTA+ EL + V GT VL +C + ++KR+V
Sbjct: 61 KDLSFLFRACQGVSVVIHTAAIVDVFGPPNYEELEEVNVNGTQAVLEACVQ-NNVKRLVY 119
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA-----AWKFAKE 184
TSS+ K R V++T + D S Y SK LAE+ +
Sbjct: 120 TSSIEVAGPNFKGRPIFNGVEDTPYED-----TSTPPYASSKLLAENIVLNANGAPLKQG 174
Query: 185 KSIDLVTINPAMVIG---PLLQPTLN---TSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238
+ + P + G L + T+ + IKG+ P V G +VA
Sbjct: 175 GYLVTCALRPMYIYGEGSHFLTEIFDFLLTNNGWLFPRIKGSGVNPLVYVG-----NVAW 229
Query: 239 AHIQAF 244
AHI A
Sbjct: 230 AHILAA 235
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 24/119 (20%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
V GA+G LVK LL+RG+ V A R+P+ + + + +L +
Sbjct: 3 VIGATGKTGRRLVKELLARGHQVTALSRNPS-----------KAPAPGVTPVQKDLFDLA 51
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132
+ G D V G ++L++ A+ ++R+V+ S+
Sbjct: 52 DLAEALAGVDAVVDAFGAR------------PDDSDGVKHLLDAAARA-GVRRIVVVSA 97
|
Length = 182 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTGA+GY+ LV LL G+ V+A VR P K SER+ + + +L +
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRALVRSPE--KLADRPW-----SERVTVVRGDLED 53
Query: 72 EGSFDSIVDGCDGV 85
S + ++G D
Sbjct: 54 PESLRAALEGIDTA 67
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 61/253 (24%), Positives = 90/253 (35%), Gaps = 54/253 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASV-----RDPNDPKKTRHLLALDGASERLQLFK 66
+ + G + +I LV+ LL+ G+ V +V P+ P+ H++ D
Sbjct: 3 ILIIGGTRFIGKALVEELLAAGHDV--TVFNRGRTKPDLPEGVEHIVG-DRNDRD---AL 56
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
LL FD +VD +T QVE A KG + K+
Sbjct: 57 EELLGGEDFDVVVDTI---AYTPR---------QVERALDAFKGRV------------KQ 92
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW-YPLSKTLAEDAAWKFAKEK 185
+ SS + L G+ T + T +P+ S+ W Y K AED E
Sbjct: 93 YIFISSASVYLKPGRVIT-----ESTPLREPDAVGLSDPWDYGRGKRAAED----VLIEA 143
Query: 186 SIDLVTI-NPAMVIGPLL-QPTLNTSAAAVLS----LIKGAQTYPNVTFGWVNVKDVANA 239
+ TI P + GP L + L+ G V F VKD+A A
Sbjct: 144 AAFPYTIVRPPYIYGPGDYTGRLAYFFDRLARGRPILVPGDGHSL-VQFIH--VKDLARA 200
Query: 240 HIQAFEVPSANGR 252
+ A P A G
Sbjct: 201 LLGAAGNPKAIGG 213
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 14 VTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE 72
V GA+G +V+ LL G+ V+A RDP+ P LA G ++ + +L +
Sbjct: 3 VFGATGKQGGSVVRALLKDPGFKVRALTRDPSSPAA--KALAAPGV----EVVQGDLDDP 56
Query: 73 GSFDSIVDGCDGVCHTASPFYHDAKDPQVEL 103
S ++ + G GV F+ + ++
Sbjct: 57 ESLEAALKGVYGVFLVT-DFWEAGGEDEIAQ 86
|
NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S LV LL G V V D N R + + ++ + K +LL+
Sbjct: 2 ILVTGGAGFIGSHLVDRLLEEGNEV--VVVD-NLSSGRRENIEPEFENKAFRFVKRDLLD 58
Query: 72 EGSFDSIVDGCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ D V H A+ D A DP ++ L+ V T NVL + +KR+
Sbjct: 59 T-ADKVAKKDGDTVFHLAA--NPDVRLGATDPDID-LEENVLATYNVLEAMRA-NGVKRI 113
Query: 128 VLTSSMAAVLNTGKPRTPD 146
V SS TP+
Sbjct: 114 VFASSSTVYGEAKVIPTPE 132
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 8e-07
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
VTGA+G++ +V+ LL+RG+ V+A+VR+P G L +L +
Sbjct: 5 VTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-----GGVEVVL----GDLRDPK 55
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133
S + G DGV + V+ T V + A +K V S +
Sbjct: 56 SLVAGAKGVDGVLLISGLLDGSDAFRAVQ-------VTAVVRAAEAAGAGVKHGVSLSVL 108
Query: 134 AA 135
A
Sbjct: 109 GA 110
|
Length = 275 |
| >gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 29/187 (15%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
+ GA+G S +V+ L+RG+ V A VRDP K E+L++ + ++L+
Sbjct: 4 IIGATGRTGSAIVREALARGHEVTALVRDPA--KLPAEH-------EKLKVVQGDVLDLE 54
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133
++G D V L +GT N++ S K +KR+++
Sbjct: 55 DVKEALEGQDAVISALGT---RNDLSPTTLH---SEGTRNIV-SAMKAAGVKRLIVVGGA 107
Query: 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTIN 193
+ R +V +T + K +E +D +
Sbjct: 108 G----SLDDRPKVTLVLDTLLF-------PPALRRV--AEDHARMLKVLRESGLDWTAVR 154
Query: 194 PAMVIGP 200
P +
Sbjct: 155 PPALFDG 161
|
Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 21/197 (10%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+ VTGA G+I S L + L + G+ V+ + D K H+ E + +L
Sbjct: 1 QRALVTGAGGFIGSHLAERLKAEGHYVRGA-----DWKSPEHMTQPTDDDEFHLV---DL 52
Query: 70 LEEGSFDSIVDGCDGVCHTASPF--YHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
E + +G D V H A+ + ++ N+L + A+ ++R
Sbjct: 53 REMENCLKATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEA-ARINGVERF 111
Query: 128 VLTSSMAAVLNTGKPRTPDVVV---DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
+ SS A V K VV ++ W ++P+ Y K E + ++
Sbjct: 112 LFASS-ACVYPEFKQLETTVVRLREEDAWPAEPQDA------YGWEKLATERLCQHYNED 164
Query: 185 KSIDLVTINPAMVIGPL 201
I+ + + GP
Sbjct: 165 YGIETRIVRFHNIYGPR 181
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRD--PNDPKKTRHLLALDGASERLQLFKA 67
K + +TG +G++ S L LL G+ V V + + HL+ + +
Sbjct: 1 KRILITGGAGFLGSHLCDRLLEDGHEVIC-VDNFFTGRKRNIEHLI----GHPNFEFIRH 55
Query: 68 NLLE--EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
++ E D I C ASP H +P ++ L V GTLN+L +
Sbjct: 56 DVTEPLYLEVDQIY---HLAC-PASPV-HYQYNP-IKTLKTNVLGTLNMLGLAKR--VGA 107
Query: 126 RVVLTSS 132
RV+L S+
Sbjct: 108 RVLLAST 114
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 6e-06
Identities = 58/257 (22%), Positives = 88/257 (34%), Gaps = 44/257 (17%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVK--ASVR--DPNDPKK--TRHLLALD-----GASERL 62
+TGA+G++ L++ LL VK VR D + + LL A ER+
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60
Query: 63 Q-----LFKANL-LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLN 116
L + NL L + F + + D + H A+ +L V GT VL
Sbjct: 61 IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPYS--DLRATNVLGTREVLR 118
Query: 117 SCAKFPSIKRVVLTSSMAAVLNT---GKPRTPDVVVDETWFSDPEVCKQSELW---YPLS 170
+ S+ A +N G +DE Y S
Sbjct: 119 LAKQMKK-LPFHHVST--AYVNGERGGLLEEKPYKLDEDEP------ALLGGLPNGYTQS 169
Query: 171 KTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT--YPNVT- 227
K LAE + A + +V P+++ G +N L+ GA P++
Sbjct: 170 KWLAEQLVREAAGG--LPVVIYRPSIITGESRTGWINGDDFGPRGLLGGAGLGVLPDILG 227
Query: 228 -----FGWVNVKDVANA 239
V V VANA
Sbjct: 228 DPDARLDLVPVDYVANA 244
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GK V VTG +G+ SWL L G V DP P + ++ + +
Sbjct: 4 GKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDP--PTNPNLFELANLD-NKISSTRGD 60
Query: 69 LLEEGSFDSIVDGC--DGVCH-TASPFYHDA-KDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+ + + + + V H A P + KDP VE + V GT+N+L + + S+
Sbjct: 61 IRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDP-VETFETNVMGTVNLLEAIRETGSV 119
Query: 125 KRVVLTSS 132
K VV +S
Sbjct: 120 KAVVNVTS 127
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ V GA+GY +V+ L G+ V+A VRDP LA + ++L + +L +
Sbjct: 1 ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSE------LAKSLKAAGVELVEGDLDD 54
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVK 109
S + G D V + + +L D A +
Sbjct: 55 HESLVEALKGVDVVFSVTGFWLSKEIEDGKKLADAAKE 92
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 21/146 (14%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GK VTGAS I + L + G V + + L G R +
Sbjct: 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEAR--VLVF 61
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTA-----SPFYHDAKDPQ-VELLDPAVKGTLNV 114
++ +E + ++++ D + + A + + ++D + GT NV
Sbjct: 62 DVSDEAAVRALIEAAVEAFGALDILVNNAGITRDALL-PRMSEEDWDRVIDVNLTGTFNV 120
Query: 115 LNSCAKFPSIK----RVVLTSSMAAV 136
+ + P IK R+V SS++ V
Sbjct: 121 VRAALP-PMIKARYGRIVNISSVSGV 145
|
Length = 246 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 25/197 (12%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
V + G +G+I S LV LL G V+ P L L G + K +
Sbjct: 2 VLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYE------LPLGG----VDYIKGDYE 51
Query: 71 EEGSFDSIVDGCDGVCHTAS-PFYHDAK-DPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
+S + G D V H AS + +P +++ V T+ +L +CA I +++
Sbjct: 52 NRADLESALVGIDTVIHLASTTNPATSNKNPILDIQT-NVAPTVQLLEACAA-AGIGKII 109
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
SS V G P + E+ + P Y +SK E + +D
Sbjct: 110 FASSGGTVY--GVPEQLP--ISESDPTLPISS------YGISKLAIEKYLRLYQYLYGLD 159
Query: 189 LVTINPAMVIGPLLQPT 205
+ + GP +P
Sbjct: 160 YTVLRISNPYGPGQRPD 176
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK----TRHLLALDGASERLQLF 65
V +TG +G+I S L + L +G+ V D N ++ L + ++
Sbjct: 1 MRVLITGGAGFIGSNLARFFLKQGWEV--IGFD-NLMRRGSFGNLAWLKANREDGGVRFV 57
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPS 123
++ + + + D + HTA+ P+++ A+ GTLNVL + +
Sbjct: 58 HGDIRNRNDLEDLFEDIDLIIHTAAQPSVTTSASSPRLDFETNAL-GTLNVLEAARQHAP 116
Query: 124 IKRVVLTSS 132
+ TS+
Sbjct: 117 NAPFIFTST 125
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 22/123 (17%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
VTGA+G + + +V+LLL++ +V A VR+P K A DG ++ + + +
Sbjct: 3 VTGATGKLGTAVVELLLAKVASVVALVRNPEKAKA----FAADGV----EVRQGDYDDPE 54
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAV-KGTLNVLNSCAKFPSIKRVVLTSS 132
+ + +G D + + D +D A G +K +V S+
Sbjct: 55 TLERAFEGVDRLLLISPSDLEDRIQQHKNFIDAAKQAG-------------VKHIVYLSA 101
Query: 133 MAA 135
A
Sbjct: 102 SGA 104
|
TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 25/206 (12%)
Query: 12 VCVTGASGYIASWLV-KLLLSRGYTVKASVRDPNDPKKTRHLL-ALDG-------ASERL 62
V +TGA+G++ ++L+ +LL V VR +D L D +++R+
Sbjct: 3 VLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRV 62
Query: 63 QLFKANL------LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLN 116
++ +L L E ++ + + D + H A+ + P EL V GT VL
Sbjct: 63 EVVAGDLAEPDLGLSERTWQELAENVDLIIHNAA--LVNHVFPYSELRGANVLGTAEVLR 120
Query: 117 SCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW--YPLSKTLA 174
A K + SS +V T V DE P L Y SK +A
Sbjct: 121 LAAT-GKPKPLHYVSS-ISVGETEYYSNFTVDFDE---ISPTRNVGQGLAGGYGRSKWVA 175
Query: 175 EDAAWKFAKEKSIDLVTINPAMVIGP 200
E + A ++ + + P + G
Sbjct: 176 EKLV-REAGDRGLPVTIFRPGYITGD 200
|
Length = 382 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 46/192 (23%), Positives = 70/192 (36%), Gaps = 25/192 (13%)
Query: 11 VVCVTGASGYIASWLVKLLLSRG--YTVK-ASVRDPNDPKKTRHLLALDGASERLQLFKA 67
V +TGASG++ L + LLS + V P P + +
Sbjct: 2 KVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPSGAPRVTQI----------AG 51
Query: 68 NLLEEGSFDSIVDG-CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
+L +++ +G D V H A+ A+ V GT N+L + K R
Sbjct: 52 DLAVPALIEALANGRPDVVFHLAAIVSGGAEADFDLGYRVNVDGTRNLLEALRKNGPKPR 111
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
V TSS+A G P P+ V D T DP Y K + E +++
Sbjct: 112 FVFTSSLAVY---GLPL-PNPVTDHTAL-DP------ASSYGAQKAMCELLLNDYSRRGF 160
Query: 187 IDLVTINPAMVI 198
+D T+ V
Sbjct: 161 VDGRTLRLPTVC 172
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 44/201 (21%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K+V +TG +G+I L + L + G+ V R P + ++ DG S
Sbjct: 1 KIV-ITGGTGFIGRALTRRLTAAGHEVVVLSRRPGKAEGLAEVITWDGLSLG-------- 51
Query: 70 LEEGSFDSIVDGCDGVCHTA------SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
+ G D V + A + K E+L ++ T ++ + A P+
Sbjct: 52 ------PWELPGADAVINLAGEPIACRRWTEANKK---EILSSRIESTRVLVEAIANAPA 102
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD----PEVCKQSELWYPLSKTLAEDAAW 179
+V++++S + D V+ E S EVCK W E AA
Sbjct: 103 PPKVLISASAVGYYGH----SGDEVLTENSPSGKDFLAEVCKA---W--------EKAAQ 147
Query: 180 KFAKEKSIDLVTINPAMVIGP 200
A E +V + +V+GP
Sbjct: 148 P-ASELGTRVVILRTGVVLGP 167
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTGA+G + L + L + + D P G+ +++ + ++ +
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGLDRRRP---------PGSPPKVEYVRLDIRD 51
Query: 72 EGSFDSIVD-GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
+ D + D V H A + ++ V GT NVL++CA + RVV+T
Sbjct: 52 PAAADVFREREADAVVHLAFILDPPRDGAERHRIN--VDGTQNVLDACAAAG-VPRVVVT 108
Query: 131 SSMAA 135
SS+A
Sbjct: 109 SSVAV 113
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|215072 PLN00141, PLN00141, Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 25/141 (17%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K V V GA+G +V+ LL++G+ VKA VRD + K + L D + LQ+ +A++
Sbjct: 18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD---KAKTSLPQDPS---LQIVRADV 71
Query: 70 LEEGS---FDSIVDGCDGV-CHTASPFYHDAKDP-QVELLDPAVKGTLNVLNSCAKFPSI 124
EGS ++I D D V C T D P +V+ GT+N++ +C K +
Sbjct: 72 T-EGSDKLVEAIGDDSDAVICATGFRRSFDPFAPWKVDNF-----GTVNLVEACRKA-GV 124
Query: 125 KRVVLTSS-------MAAVLN 138
R +L SS M +LN
Sbjct: 125 TRFILVSSILVNGAAMGQILN 145
|
Length = 251 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 33/161 (20%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKA--SVRDPNDPKKTRHLLALDGASERLQLFKA 67
+ VTGA+G+I + K LL RG V ++ D D + L L G S + K
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLERGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVKG 60
Query: 68 N---------LLEEGSFDSIVDGCDGVCHTASPFYHDA------KDPQVELLDPAVKGTL 112
+ L ++ FD+ V H A A ++P +D + G L
Sbjct: 61 DLEDREALRRLFKDHEFDA-------VIHLA----AQAGVRYSLENPHA-YVDSNIVGFL 108
Query: 113 NVLNSCAKFPSIKRVVL--TSSMAAVLNTGKPRTPDVVVDE 151
N+L C F +K +V +SS+ LNT P + D VD
Sbjct: 109 NLLELCRHFG-VKHLVYASSSSVYG-LNTKMPFSEDDRVDH 147
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
V GASG I + + L RG+ V+ R L L G ++ A+ ++
Sbjct: 4 VLGASGPIGREVARELRRRGWDVRLVSRSG------SKLAWLPGV----EIVAADAMDAS 53
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKG 110
S + G D + H A+P Y ++ L++ V
Sbjct: 54 SVIAAARGADVIYHCANPAYTRWEELFPPLMENVVAA 90
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 33/140 (23%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLL 70
V VTG +GYI S V LL GY V V D H AL R++ ++ ++
Sbjct: 2 VLVTGGAGYIGSHTVVELLEAGYDV--VVLDNL---SNGHREALPRIEKIRIEFYEGDIR 56
Query: 71 EEGSFDSIVD--GCDGVCHTAS----------P--FYHDAKDPQVELLDPAVKGTLNVLN 116
+ + D + D V H A+ P +Y + V GTLN+L
Sbjct: 57 DRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDN-----------NVVGTLNLLE 105
Query: 117 SCAKFPSIKRVVLTSSMAAV 136
+ +K V +SS AAV
Sbjct: 106 AMRAH-GVKNFVFSSS-AAV 123
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 62/263 (23%), Positives = 90/263 (34%), Gaps = 59/263 (22%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTGA+G+I S +V+ L++ G+ V R K L GA Q+ + +L +
Sbjct: 3 VFVTGATGFIGSAVVRELVAAGHEVVGLARSDAGAAK----LEAAGA----QVHRGDLED 54
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQ---------VELLDPAVKGTLNVLNSCAKFP 122
D V H A F HD + +E L A++GT
Sbjct: 55 LDILRKAAAEADAVIHLA--FTHDFDNFAQACEVDRRAIEALGEALRGT----------- 101
Query: 123 SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFA 182
K ++ TS + + TG E P+ + +S E AA + A
Sbjct: 102 -GKPLIYTSGIWLLGPTG--------GQEEDEEAPDD-PPTPAARAVS----EAAALELA 147
Query: 183 KEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI-----KGAQTYP-NVTFGW--VNVK 234
+ V P +V G V LI KG Y + W V+
Sbjct: 148 ERGVRASVVRLPPVVHGR-------GDHGFVPMLIAIAREKGVSAYVGDGKNRWPAVHRD 200
Query: 235 DVANAHIQAFEVPSANGRYCLVE 257
D A + A E A Y V
Sbjct: 201 DAARLYRLALEKGKAGSVYHAVA 223
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 32/138 (23%)
Query: 19 GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78
GY+ L + LL++G+ V + R P + + L + + +
Sbjct: 7 GYLGQRLARQLLAQGWQVTGTTRSP------------EKLAADRPAGVTPLAADLTQPGL 54
Query: 79 VDGCDG-VCHTASPF--YHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAA 135
+ D V P Y DP + L A+ P+++RV+ SS
Sbjct: 55 LADVDHLVISLPPPAGSYRGGYDPGLRALLDALAQL----------PAVQRVIYLSS--- 101
Query: 136 VLNTG-KPRTPDVVVDET 152
TG VDET
Sbjct: 102 ---TGVYGDQQGEWVDET 116
|
Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251 |
| >gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
V VTGA+G + S V +L GYTV A + +L +L GASE
Sbjct: 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTGKEE---QADYLKSL-GASE 194
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTG +GYI S V+ LL G+ V V D H +AL + + ++ +LL+
Sbjct: 3 VLVTGGAGYIGSHTVRQLLKTGHEV--VVLDNL---SNGHKIALL--KLQFKFYEGDLLD 55
Query: 72 EGSFDSIVD--GCDGVCHTASPFY--HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
++ + D V H A+ ++P ++ D V GTLN++ + + +K+
Sbjct: 56 RALLTAVFEENKIDAVVHFAASISVGESVQNP-LKYYDNNVVGTLNLIEAMLQT-GVKKF 113
Query: 128 VLTSSMAAV 136
+ +S+ AAV
Sbjct: 114 IFSST-AAV 121
|
Length = 329 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 28/149 (18%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGA-SERLQLFKAN 68
KVV +TG S I L L ++GY V A+ R+P L +L ++ L++ + +
Sbjct: 1 KVVLITGCSSGIGLALALALAAQGYRVIATARNP------DKLESLGELLNDNLEVLELD 54
Query: 69 LLEEGSFDSIVDGC-------DGVCHTA-----SPFYHDAKDPQV-ELLDPAVKGTLNVL 115
+ +E S + V D + + A P + +V EL + V G L V
Sbjct: 55 VTDEESIKAAVKEVIERFGRIDVLVNNAGYGLFGPL-EETSIEEVRELFEVNVFGPLRVT 113
Query: 116 NSCAKFPSIK-----RVVLTSSMAAVLNT 139
+ P ++ R+V SS+A ++ T
Sbjct: 114 RAFL--PLMRKQGSGRIVNVSSVAGLVPT 140
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-------DPNDPKKTRHLLALDGASE 60
G V VTG +G I L + L R A + P + K + L AL+
Sbjct: 204 PGGVYLVTGGAGGIGRALARALARR---YGARLVLLGRSPLPPEEEWKAQTLAALEALGA 260
Query: 61 RLQLFKANLLEEGSFDSIVD-------GCDGVCHTA---SPFYHDAKDPQ--VELLDPAV 108
R+ A++ + + +++ DGV H A K + +L P V
Sbjct: 261 RVLYISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKTAEDFEAVLAPKV 320
Query: 109 KGTLNVLNSCAKFPSIKRVVLTSSMAAVL-NTG 140
G LN+ + A P + VL SS++A G
Sbjct: 321 DGLLNLAQALADEP-LDFFVLFSSVSAFFGGAG 352
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 20/133 (15%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
+TG +G S+L + LL +GY V VR + R L +R+ L +L
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTDRIDH-LYINKDRITLHYGDLT 59
Query: 71 EEGSFDSIVDGCDGVCHTASP--FYHDA---------KDPQVELLDPAVKGTLNVLNSCA 119
+ S ++ P YH A DP+ + GTLN+L +
Sbjct: 60 DSSSLRRAIE-------KVRPDEIYHLAAQSHVKVSFDDPE-YTAEVNAVGTLNLLEAIR 111
Query: 120 KFPSIKRVVLTSS 132
R SS
Sbjct: 112 ILGLDARFYQASS 124
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 8e-04
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + GA+G+I L + LL +G+ V VR+ K E + + + +L +
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVRNTKRLSKE--------DQEPVAVVEGDLRD 52
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
S V G D V H A +V+ V+GT NVL + + +K + S
Sbjct: 53 LDSLSDAVQGVDVVIHLAGAPRDTRDFCEVD-----VEGTRNVLEAAKEAG-VKHFIFIS 106
Query: 132 SMAAVLNTGKPRTPD 146
S+ A + + P
Sbjct: 107 SLGAYGDLHEETEPS 121
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +GYI S V+ LL G+ V + D L + + + + +L +
Sbjct: 2 ILVTGGAGYIGSHTVRQLLESGHEV--VILDNLSNGSREALPRGERITP-VTFVEGDLRD 58
Query: 72 EGSFDSIVDG--CDGVCHTASPFY--HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
D + + D V H A + P ++ V GTLN+L + + +K+
Sbjct: 59 RELLDRLFEEHKIDAVIHFAGLIAVGESVQKP-LKYYRNNVVGTLNLLEAMQQA-GVKKF 116
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDE 151
+ +SS AAV G+P + + D
Sbjct: 117 IFSSS-AAVY--GEPSSIPISEDS 137
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN----DPKKTRHLLALDGAS 59
V V GA+GYI ++V+ L+ RGY V A R+ + K L GA
Sbjct: 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAE 114
|
Length = 390 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 33/150 (22%)
Query: 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND---PKKTRHLLALDGA-SE 60
+ G+ + VTG +GYI S V LL GY V V D D + R + L G +
Sbjct: 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKV--VVIDNLDNSSEEALRRVKELAGDLGD 58
Query: 61 RLQLFKANLLEEGSFDSIVDGC--DGVCHTAS------------PFYHDAKDPQVELLDP 106
L K +L ++ + + + D V H A +Y +
Sbjct: 59 NLVFHKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDN----------- 107
Query: 107 AVKGTLNVLNSCAKFPSIKRVVLTSSMAAV 136
+ GT+N+L AK K++V +SS A V
Sbjct: 108 NLVGTINLLEVMAKH-GCKKLVFSSS-ATV 135
|
Length = 352 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 22/145 (15%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K V VTGA+ I V+ LL+ G V A+VRDP HL+A G ++ +
Sbjct: 3 DKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPG---SAAHLVAKYGD--KVVPLRL 57
Query: 68 NLLEEGSFDSIVDGCD---------GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSC 118
++ + S + GV A+ A + + +D V G L +
Sbjct: 58 DVTDPESIKAAAAQAKDVDVVINNAGVLKPATLLEEGALEALKQEMDVNVFGLLRLAQ-- 115
Query: 119 AKFPSIKR-----VVLTSSMAAVLN 138
A P +K +V +S+A++ N
Sbjct: 116 AFAPVLKANGGGAIVNLNSVASLKN 140
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|225462 COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 37/192 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + GASG S ++K L RG+ V A VR+ + A + + + + ++ +
Sbjct: 3 IAIIGASGKAGSRILKEALKRGHEVTAIVRNA----------SKLAARQGVTILQKDIFD 52
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL-- 129
S S + G D V D D ++ L K + R+++
Sbjct: 53 LTSLASDLAGHDAVISAFGAGASDN--------DELHSKSIEALIEALKGAGVPRLLVVG 104
Query: 130 -TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
S+ T +VD F + P + AE EKS+D
Sbjct: 105 GAGSLEIDEGT-------RLVDTPDFPAE--------YKPEALAQAEFLD-SLRAEKSLD 148
Query: 189 LVTINPAMVIGP 200
++PA P
Sbjct: 149 WTFVSPAAFFEP 160
|
Length = 211 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 79/337 (23%), Positives = 129/337 (38%), Gaps = 58/337 (17%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V +TG +G I S L++ LL RG+ V V D + HL L + + ++ +
Sbjct: 3 VLITGGAGQIGSHLIEHLLERGHQV--VVIDNFATGRREHLPDHPN----LTVVEGSIAD 56
Query: 72 EGSFDSIVDGC--DGVCHTASPFYHDAKDPQVELLDPA--VKGTLNVLNSCAKFPSIKRV 127
+ D + D V HTA+ + KDP D V G NV+ + K +KR+
Sbjct: 57 KALVDKLFGDFKPDAVVHTAAAY----KDPDDWYEDTLTNVVGGANVVQAAKKA-GVKRL 111
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+ + A+ KP + +D S Y +SKT E + + +
Sbjct: 112 IYFQT--ALCYGLKPMQQPIRLDHPRAP----PGSS---YAISKTAGEY----YLELSGV 158
Query: 188 DLVT------INPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY-PNVTFGWVNVKDVANAH 240
D VT P VIGPL PT L G + + + +V VKD+A
Sbjct: 159 DFVTFRLANVTGPRNVIGPL--PTFYQ------RLKAGKKCFVTDTRRDFVFVKDLARVV 210
Query: 241 IQAFEVPSANGRYCLVERVSH-YSEIVNIIRE-----LYPAFQLPEKCADDKPHV---PT 291
+A + +G Y E+ + + E L P ++ E DD P + P+
Sbjct: 211 DKALDGIRGHGAYHFSSGEDVSIKELFDAVVEALDLPLRPEVEVVELGPDDVPSILLDPS 270
Query: 292 YQVLKEKVKNLG-IEFIPVEVSLKETIESLKEKGFVD 327
++ G EF P+ ++ + + G
Sbjct: 271 -----RTFQDFGWKEFTPLSETVSAALAWYDKHGVTG 302
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 31/186 (16%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVK--ASVRDPNDPKKTRHL----------LALDGA 58
V +TGA+G++ ++L++ LL R K VR ++ L L +
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 59 SERLQ-----LFKANL-LEEGSFDSIVDGCDGVCHTASP---FYHDAKDPQVELLDPAVK 109
R++ L K NL L + + + + D + H + Y EL V
Sbjct: 61 LSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVYPYE-----ELKPANVL 115
Query: 110 GTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169
GT +L A K + S+++ D D E Y
Sbjct: 116 GTKELLKLAATGKL-KPLHFVSTLSVFSAEEYNALDDEESD----DMLESQNGLPNGYIQ 170
Query: 170 SKTLAE 175
SK +AE
Sbjct: 171 SKWVAE 176
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
KV VTGAS I + + L GY V +R+P D A G E + +
Sbjct: 1 KVALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLAALS---ASGGDVEAVPYDARDP 57
Query: 70 LEEGSF----DSIVDGCDGVCHTA 89
+ + D + H A
Sbjct: 58 EDARALVDALRDRFGRIDVLVHNA 81
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.003
Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 35/152 (23%)
Query: 10 KVVCVTGASGYI----ASWLVK------LLLSRGYTVKASVRDPNDPKKTRHLLALDGAS 59
+TG G + A WL + +LLSR P+ P L L+ A
Sbjct: 1 GTYLITGGLGGLGRALARWLAERGARRLVLLSR--------SGPDAPGAAALLAELEAAG 52
Query: 60 ERLQLFKANLLEEGSFDSIVDGC-------DGVCHTA-----SPFYHDAKDPQ--VELLD 105
R+ + ++ + + +++ GV H A + P+ +L
Sbjct: 53 ARVTVVACDVADRDALAAVLAAIPAVEGPLTGVIHAAGVLDDGVL--ASLTPERFAAVLA 110
Query: 106 PAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVL 137
P G N+ A P + VL SS+A VL
Sbjct: 111 PKAAGAWNLHELTADLP-LDFFVLFSSIAGVL 141
|
It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 328 | |||
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.97 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.97 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.97 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.97 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.97 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.95 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.95 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.95 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.95 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.94 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.94 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.94 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.93 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.93 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.93 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.93 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.92 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.92 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.92 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.92 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.92 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.92 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.92 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.92 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.91 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.91 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.91 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.91 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.91 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.91 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.91 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.91 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.91 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.91 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.91 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.91 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.9 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.9 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.9 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.9 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.9 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.9 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.9 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.9 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.89 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.89 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.89 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.89 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.89 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.89 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.89 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.89 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.89 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.89 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.89 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.89 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.88 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.88 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.88 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.88 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.88 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.88 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.88 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.88 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.88 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.87 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.87 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.87 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.87 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.86 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.86 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.86 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.86 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.86 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.86 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.86 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.86 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.86 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.86 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.86 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.86 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.86 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.85 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.85 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.85 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.85 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.85 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.85 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.85 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.85 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.85 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.85 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.84 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.84 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.84 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.84 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.84 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.83 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.83 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.83 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.83 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.83 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.83 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.83 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.83 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.83 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.82 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.82 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.82 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.81 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.81 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.81 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.81 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.81 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.8 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.79 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.78 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.78 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.77 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.77 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.76 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.76 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.76 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.75 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.75 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.74 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.74 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.73 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.72 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.71 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.69 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.68 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.67 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.67 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.66 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.66 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.65 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.64 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.64 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.62 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.61 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.6 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.59 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.56 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.56 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.53 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.52 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.5 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.46 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.46 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.42 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.3 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.28 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.13 | |
| PLN00106 | 323 | malate dehydrogenase | 99.09 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.0 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.94 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.92 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.84 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.79 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.78 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.78 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.67 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.61 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.59 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.58 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.46 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.45 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.45 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.39 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.38 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.37 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.35 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.3 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 98.19 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.18 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 98.12 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.11 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.1 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 98.07 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.0 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.97 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.93 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.92 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.89 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.89 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.88 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.88 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.88 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.87 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.86 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.82 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.82 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.8 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.79 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.76 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.75 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.74 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.72 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.72 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.71 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.71 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 97.68 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.68 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.64 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 97.61 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.6 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.57 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.56 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.55 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.52 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.52 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.5 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.5 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.47 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 97.4 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.38 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.37 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.36 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.36 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.33 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 97.32 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.32 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.32 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.32 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.31 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.3 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.27 | |
| PRK08223 | 287 | hypothetical protein; Validated | 97.26 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.24 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.24 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.23 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 97.23 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.2 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 97.19 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 97.18 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 97.17 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.17 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.17 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.17 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.17 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.16 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.14 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.14 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.12 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 97.11 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.11 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.07 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 97.07 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 97.03 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 97.02 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 97.02 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.0 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.0 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.0 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.99 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.97 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.96 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.96 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 96.96 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.94 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.94 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.9 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.89 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 96.88 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 96.87 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.86 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.85 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.85 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.83 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.83 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 96.82 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.81 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.81 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.79 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 96.73 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.71 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.71 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 96.71 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.68 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.65 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 96.65 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.59 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.58 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 96.57 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.56 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.55 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.55 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 96.54 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.54 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.54 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.54 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.53 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.53 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.53 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.51 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 96.5 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.49 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.49 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.47 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 96.47 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.47 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.47 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.46 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.45 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 96.45 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 96.45 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.41 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 96.39 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.37 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.37 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.33 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.31 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.29 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.29 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.29 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.28 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.27 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 96.24 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 96.22 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.2 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 96.2 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 96.19 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 96.17 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 96.17 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.16 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.14 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.14 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.14 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 96.14 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.13 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.13 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.13 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 96.12 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.11 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.11 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.11 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.1 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.1 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.09 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.09 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 96.08 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 96.06 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 96.04 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.03 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.01 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 95.99 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.96 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 95.95 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.95 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.93 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.92 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.9 | |
| PLN02928 | 347 | oxidoreductase family protein | 95.85 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.85 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 95.84 |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=354.87 Aligned_cols=320 Identities=58% Similarity=0.937 Sum_probs=281.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
.+++|+|||||||||+|+++.|+++||+|+++.|++++.+....+.+.....++.+.+.+||+|++++..++++||+|||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 57899999999999999999999999999999999998776556666666667799999999999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
+|.++.....++..+..+.++.|+.|++++|++...++|||++||++++............++|+.+.++++......+|
T Consensus 85 ~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~Y 164 (327)
T KOG1502|consen 85 TASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLWY 164 (327)
T ss_pred eCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHHHH
Confidence 99997776655666899999999999999999985599999999999888665556677899999999888766666899
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
..||..+|...++++++.+++.+.+.|+.|+||...+..+.....+.+++.|. ..+++....|||++|+|.+.+.+++.
T Consensus 165 ~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E~ 244 (327)
T KOG1502|consen 165 ALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYPNFWLAFVDVRDVALAHVLALEK 244 (327)
T ss_pred HHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCCCCceeeEeHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999998877677778888888885 55666666799999999999999999
Q ss_pred CCCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCceecchHHHHhcC-CccccHHHHHHHHHHHHHHcC
Q 020266 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADD-KPHVPTYQVLKEKVKNLG-IEFIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 247 ~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~lg-~~~~~~~~~l~~~~~~~~~~~ 324 (328)
+...|+|.++++..++.|+++.+.+.+|.+.+|...... ........++++|++.+| |+.++++|.+.++++++++++
T Consensus 245 ~~a~GRyic~~~~~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~~k~k~lg~~~~~~l~e~~~dt~~sl~~~~ 324 (327)
T KOG1502|consen 245 PSAKGRYICVGEVVSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSSEKLKSLGGFKFRPLEETLSDTVESLREKG 324 (327)
T ss_pred cccCceEEEecCcccHHHHHHHHHHhCCCCCCCCCCCccccccccccccccHHHHhcccceecChHHHHHHHHHHHHHhc
Confidence 999999999998888999999999999988877665554 445556678999998887 669999999999999999998
Q ss_pred CCC
Q 020266 325 FVD 327 (328)
Q Consensus 325 ~~~ 327 (328)
++.
T Consensus 325 ~l~ 327 (327)
T KOG1502|consen 325 LLL 327 (327)
T ss_pred CCC
Confidence 763
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=353.24 Aligned_cols=318 Identities=81% Similarity=1.295 Sum_probs=249.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++|+|||||||||||++|+++|+++|++|+++.|+.........+.......++++++.+|++|++.+.++++++|+|||
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 36899999999999999999999999999999997665432222221111234789999999999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhh-ccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAV-LNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~-~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
+|+.......++....+++|+.++.+++++|.+..++++|||+||.+++ |+.. +.....+++|+.+..|.......+.
T Consensus 83 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~-~~~~~~~~~E~~~~~p~~~~~~~~~ 161 (322)
T PLN02662 83 TASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGK-PLTPDVVVDETWFSDPAFCEESKLW 161 (322)
T ss_pred eCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCc-CCCCCCcCCcccCCChhHhhcccch
Confidence 9997543333333367899999999999999876467899999997653 5322 1123346788877665432223457
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
|+.+|..+|.+++.++++++++++++||+++|||...+........+.+++.+.+.++++.++|+|++|+|++++.++++
T Consensus 162 Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 241 (322)
T PLN02662 162 YVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFEI 241 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCccCCCCCcCeEEHHHHHHHHHHHhcC
Confidence 99999999999999998899999999999999998655434445566667776666677889999999999999999998
Q ss_pred CCCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCccccHHHHHHHHHHHHHHcCCC
Q 020266 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEFIPVEVSLKETIESLKEKGFV 326 (328)
Q Consensus 247 ~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~~~~~~~l~~~~~~~~~~~~~ 326 (328)
+...|.||+++..++++|+++.+.+.++....+.......+....+.+|++|+++|||++++++++|+++++||++++.+
T Consensus 242 ~~~~~~~~~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~~~~~~~~l~~~~~~~~~~~~~ 321 (322)
T PLN02662 242 PSASGRYCLVERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEKAKSLGIEFIPLEVSLKDTVESLKEKGFL 321 (322)
T ss_pred cCcCCcEEEeCCCCCHHHHHHHHHHHCCCCCCCCCCCCccccccccccChHHHHHhCCccccHHHHHHHHHHHHHHcCCC
Confidence 75567899888889999999999999886555544333233445677999999669999779999999999999999875
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-49 Score=350.29 Aligned_cols=317 Identities=57% Similarity=0.948 Sum_probs=247.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+|+|||||||||||++++++|+++|++|+++.|+..+...+...........+++++.+|++|++.+.++++++|+|||+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 84 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFHT 84 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEEe
Confidence 68999999999999999999999999999999987654443333221112347899999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhh-ccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAV-LNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~-~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
|+.......++....+++|+.|+.+++++|++..+++|||++||.+++ |+.+ +.....+++|+++..|..+..+.+.|
T Consensus 85 A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~-~~~~~~~~~E~~~~~p~~~~~~~~~Y 163 (322)
T PLN02986 85 ASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQP-PIEANDVVDETFFSDPSLCRETKNWY 163 (322)
T ss_pred CCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCc-cCCCCCCcCcccCCChHHhhccccch
Confidence 997543333444457889999999999999885467899999998654 3322 11233467888776554333345779
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
+.||..+|.+++.++++++++++++||+++|||...+..+.....+..+..+.+.++.+.++|+|++|+|++++.+++++
T Consensus 164 ~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~Dva~a~~~al~~~ 243 (322)
T PLN02986 164 PLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVALAHIKALETP 243 (322)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCCCCCcCcceeEHHHHHHHHHHHhcCc
Confidence 99999999999999998999999999999999986554344456666777776656677789999999999999999987
Q ss_pred CCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCccccHHHHHHHHHHHHHHcCCC
Q 020266 248 SANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIEFIPVEVSLKETIESLKEKGFV 326 (328)
Q Consensus 248 ~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~~~~~~~l~~~~~~~~~~~~~ 326 (328)
...++||++++.+|++|+++.+.+.+|...++............+.+|++|++.|||++++++|+++++++|+.+.|++
T Consensus 244 ~~~~~yni~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lg~~~~~l~e~~~~~~~~~~~~~~~ 322 (322)
T PLN02986 244 SANGRYIIDGPIMSVNDIIDILRELFPDLCIADTNEESEMNEMICKVCVEKVKNLGVEFTPMKSSLRDTILSLKEKCLL 322 (322)
T ss_pred ccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCCCCccccccccCCccCHHHHHHcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 6667999988889999999999999986544432111111112234899999779999669999999999999998864
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-48 Score=344.34 Aligned_cols=315 Identities=50% Similarity=0.866 Sum_probs=243.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
..++|+|||||||||||++++++|+++|++|+++.|+.+..... ..........+++++.+|++|++++.++++++|+|
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHH-HHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 34678999999999999999999999999999999976542211 00011111236889999999999999999999999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
||+|+... ......+++|+.++.+++++|++. ++++|||+||.+++||.+.. ....+++|+++...+.+..+.+
T Consensus 86 ih~A~~~~----~~~~~~~~~nv~gt~~ll~aa~~~-~v~r~V~~SS~~avyg~~~~-~~~~~~~E~~~~~~~~~~~p~~ 159 (342)
T PLN02214 86 FHTASPVT----DDPEQMVEPAVNGAKFVINAAAEA-KVKRVVITSSIGAVYMDPNR-DPEAVVDESCWSDLDFCKNTKN 159 (342)
T ss_pred EEecCCCC----CCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeccceeeeccCCC-CCCcccCcccCCChhhcccccc
Confidence 99999752 223478899999999999999997 78899999997667764321 1223578876533322333457
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCCCCCCccceeHHHHHHHHHHhh
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~D~a~~~~~~~ 244 (328)
+|+.||..+|.+++.++++++++++++||++||||+..+........+...+.+. ..++++.++|||++|+|++++.++
T Consensus 160 ~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~V~Dva~a~~~al 239 (342)
T PLN02214 160 WYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVY 239 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcccCCCCCcCeeEHHHHHHHHHHHH
Confidence 7999999999999999988999999999999999986543222223333455555 445677899999999999999999
Q ss_pred cCCCCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCC-CCCCCCceecchHHHHhcCCccccHHHHHHHHHHHHHHc
Q 020266 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCAD-DKPHVPTYQVLKEKVKNLGIEFIPVEVSLKETIESLKEK 323 (328)
Q Consensus 245 ~~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~lg~~~~~~~~~l~~~~~~~~~~ 323 (328)
+++..+|+||+++...+++|+++.+.+.+|...++..... ..+....+.+|++|+++|||++++++|+|+++++|+++.
T Consensus 240 ~~~~~~g~yn~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~LG~~p~~lee~i~~~~~~~~~~ 319 (342)
T PLN02214 240 EAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGLEFTSTKQSLYDTVKSLQEK 319 (342)
T ss_pred hCcccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcHHHHHcCCcccCHHHHHHHHHHHHHHc
Confidence 9876667999988789999999999999986555443322 123344556899999669999779999999999999998
Q ss_pred CCCC
Q 020266 324 GFVD 327 (328)
Q Consensus 324 ~~~~ 327 (328)
+.++
T Consensus 320 ~~~~ 323 (342)
T PLN02214 320 GHLA 323 (342)
T ss_pred CCCC
Confidence 8764
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=341.47 Aligned_cols=317 Identities=56% Similarity=0.920 Sum_probs=246.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+|+||||||+||||+++++.|+++|++|+++.|+..................+++++.+|++|++++.++++++|+|||+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~ 84 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHT 84 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEe
Confidence 68999999999999999999999999999999887654332222221122246889999999999999999999999999
Q ss_pred cCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 89 ASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 89 a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
||..... ..+.+...+++|+.++.+++++|.+..+.++||++||.+++++.........+++|+.+..|.....+.++|
T Consensus 85 A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y 164 (325)
T PLN02989 85 ASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWY 164 (325)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccccch
Confidence 9974322 233445788999999999999998864567999999987666532111133567888887764333334679
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
+.||..+|.+++.++++++++++++||+++|||++.+..+....++.+++.+++..+.+.++|+|++|+|++++.+++++
T Consensus 165 ~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~~~~~r~~i~v~Dva~a~~~~l~~~ 244 (325)
T PLN02989 165 VLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKALETP 244 (325)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCCCCcCcCeeEHHHHHHHHHHHhcCc
Confidence 99999999999999988899999999999999987654344556677777776545556689999999999999999876
Q ss_pred CCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCceecchHHHHhcCCc-cccHHHHHHHHHHHHHHcCC
Q 020266 248 SANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADD-KPHVPTYQVLKEKVKNLGIE-FIPVEVSLKETIESLKEKGF 325 (328)
Q Consensus 248 ~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~lg~~-~~~~~~~l~~~~~~~~~~~~ 325 (328)
...|+||++++.+|++|+++.+.+.+|...++...... ......+..|++|+++|||+ .++++++|+++++|++..+.
T Consensus 245 ~~~~~~ni~~~~~s~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~p~~~l~~gi~~~~~~~~~~~~ 324 (325)
T PLN02989 245 SANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKSLGIIEFTPTETSLRDTVLSLKEKCL 324 (325)
T ss_pred ccCceEEEecCCCCHHHHHHHHHHHCCCCCCCCCCCCcccccccCcCCCHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 55679999878899999999999999854332211111 11223567899999669998 99999999999999988764
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=320.23 Aligned_cols=300 Identities=19% Similarity=0.204 Sum_probs=246.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCC--CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--Ccc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDP--NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 83 (328)
|++|||||.||||++++++++++. .+|+.++.-. .....+... ...++..++++|++|.+.+.++++ .+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~----~~~~~~~fv~~DI~D~~~v~~~~~~~~~D 76 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADV----EDSPRYRFVQGDICDRELVDRLFKEYQPD 76 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhh----hcCCCceEEeccccCHHHHHHHHHhcCCC
Confidence 579999999999999999999875 4577777621 222222222 235689999999999999999998 699
Q ss_pred EEEEccCCCC-CCCCCcchhhhhHHHHHHHHHHHHHhcCCCc-cEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 84 GVCHTASPFY-HDAKDPQVELLDPAVKGTLNVLNSCAKFPSI-KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 84 ~vih~a~~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
+|+|.||-.. +..-..+..++++|+.||.+|++++++. .. -||+|+||. ++||+- ...+..++|++|..|.
T Consensus 77 ~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~-~~~frf~HISTD-EVYG~l--~~~~~~FtE~tp~~Ps--- 149 (340)
T COG1088 77 AVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKY-WGKFRFHHISTD-EVYGDL--GLDDDAFTETTPYNPS--- 149 (340)
T ss_pred eEEEechhccccccccChhhhhhcchHHHHHHHHHHHHh-cccceEEEeccc-cccccc--cCCCCCcccCCCCCCC---
Confidence 9999999733 2222333489999999999999999998 43 489999997 577643 2233478999999986
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC--CCCC--CCCccceeHHHHH
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTYP--NVTFGWVNVKDVA 237 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~v~v~D~a 237 (328)
|+|++||++++.++++|.+.+|++++|.|+++-|||.+.+ ...++.++.+++.|+ |++| .+.|||+||+|-+
T Consensus 150 ---SPYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfp-EKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~ 225 (340)
T COG1088 150 ---SPYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFP-EKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHC 225 (340)
T ss_pred ---CCcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCc-hhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHH
Confidence 7899999999999999999999999999999999998765 456778889999998 5664 6889999999999
Q ss_pred HHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCC-----CCCCCCCCCCCCceecchHHH-HhcCCc-cccH
Q 020266 238 NAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQL-----PEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPV 309 (328)
Q Consensus 238 ~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~ 309 (328)
+++..++.++..+.+||+++ ...+.-|++++|++.+++... .......+....++.+|.+|+ ++|||+ +.+|
T Consensus 226 ~ai~~Vl~kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~f 305 (340)
T COG1088 226 RAIDLVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQETF 305 (340)
T ss_pred HHHHHHHhcCcCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCCcCCCH
Confidence 99999999987766999986 788999999999999986433 223334456667899999999 999999 9999
Q ss_pred HHHHHHHHHHHHHcC
Q 020266 310 EVSLKETIESLKEKG 324 (328)
Q Consensus 310 ~~~l~~~~~~~~~~~ 324 (328)
+++|+++++||.++.
T Consensus 306 e~GlrkTv~WY~~N~ 320 (340)
T COG1088 306 ETGLRKTVDWYLDNE 320 (340)
T ss_pred HHHHHHHHHHHHhch
Confidence 999999999998864
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=337.71 Aligned_cols=305 Identities=19% Similarity=0.178 Sum_probs=232.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh-hhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
+++|+|||||||||||++|+++|+++|++|++++|...... .+....... ....++.++.+|++|.+.+.++++++|
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d 92 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVD 92 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCC
Confidence 45789999999999999999999999999999998654321 121111110 011368899999999999999999999
Q ss_pred EEEEccCCCCC--CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 84 GVCHTASPFYH--DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 84 ~vih~a~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
+|||+|+.... ...++ ...+++|+.|+.+|+++|++. ++++|||+||++ +||.. ...+..|+++..|.
T Consensus 93 ~ViHlAa~~~~~~~~~~~-~~~~~~Nv~gt~nll~~~~~~-~~~~~v~~SS~~-vyg~~----~~~~~~e~~~~~p~--- 162 (348)
T PRK15181 93 YVLHQAALGSVPRSLKDP-IATNSANIDGFLNMLTAARDA-HVSSFTYAASSS-TYGDH----PDLPKIEERIGRPL--- 162 (348)
T ss_pred EEEECccccCchhhhhCH-HHHHHHHHHHHHHHHHHHHHc-CCCeEEEeechH-hhCCC----CCCCCCCCCCCCCC---
Confidence 99999997432 12233 367899999999999999998 889999999975 55432 23345666655543
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCCC--CC--CCCCccceeHH
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQ--TY--PNVTFGWVNVK 234 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~ 234 (328)
++|+.+|.++|.+++.++++++++++++||+++|||++.+.. ..+..++.++..+++ .+ +.+.++|+|++
T Consensus 163 ---~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~ 239 (348)
T PRK15181 163 ---SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIE 239 (348)
T ss_pred ---ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHH
Confidence 579999999999999998888999999999999999865432 235667777777774 23 46789999999
Q ss_pred HHHHHHHHhhcCCC---CCCcEEEec-CccCHHHHHHHHHHhCCCCCC------CCCCCCCCCCCCceecchHHH-HhcC
Q 020266 235 DVANAHIQAFEVPS---ANGRYCLVE-RVSHYSEIVNIIRELYPAFQL------PEKCADDKPHVPTYQVLKEKV-KNLG 303 (328)
Q Consensus 235 D~a~~~~~~~~~~~---~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~k~-~~lg 303 (328)
|+|+++++++..+. .+++||+++ +.+|++|+++.+.+.++.... +............+.+|++|+ +.||
T Consensus 240 D~a~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 319 (348)
T PRK15181 240 NVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTFLS 319 (348)
T ss_pred HHHHHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHHHhC
Confidence 99999998776432 345999975 889999999999998863211 111111122233567899999 8899
Q ss_pred Cc-cccHHHHHHHHHHHHHHcC
Q 020266 304 IE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 304 ~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
|+ +++++|+|+++++|++.+.
T Consensus 320 w~P~~sl~egl~~~~~w~~~~~ 341 (348)
T PRK15181 320 YEPEFDIKEGLKQTLKWYIDKH 341 (348)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 99 8899999999999998754
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=332.65 Aligned_cols=324 Identities=38% Similarity=0.613 Sum_probs=238.5
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|++.+.+++|+||||||+||||++|+++|+++|++|+++.|+............. ...++++++.+|++|++.+.++++
T Consensus 1 ~~~~~~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~ 79 (338)
T PLN00198 1 MATLTPTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRAL-QELGDLKIFGADLTDEESFEAPIA 79 (338)
T ss_pred CCcccCCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhc-CCCCceEEEEcCCCChHHHHHHHh
Confidence 7787888889999999999999999999999999999999986554332211111 111368899999999999999999
Q ss_pred CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc--
Q 020266 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE-- 158 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~-- 158 (328)
++|+|||+|+.......++....+++|+.++.++++++.+..++++||++||.++++... ......+++|+.+....
T Consensus 80 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~-~~~~~~~~~E~~~~~~~~~ 158 (338)
T PLN00198 80 GCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINK-LSGTGLVMNEKNWTDVEFL 158 (338)
T ss_pred cCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccC-CCCCCceeccccCCchhhh
Confidence 999999999975433334443567899999999999998864578999999976554221 11112345554321100
Q ss_pred -ccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCC-------CCCc
Q 020266 159 -VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYP-------NVTF 228 (328)
Q Consensus 159 -~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~ 228 (328)
.+..+.++|+.||.++|.+++.++++++++++++||++||||++.........++.++..+.+ ..+ ++.+
T Consensus 159 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 238 (338)
T PLN00198 159 TSEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSI 238 (338)
T ss_pred hhcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCc
Confidence 001134669999999999999999989999999999999999864332222233445555543 112 2347
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCc-cc
Q 020266 229 GWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE-FI 307 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~-~~ 307 (328)
+|+|++|+|++++.+++.+...+.|++++..+++.|+++.+.+.++...++..... .+....+.+|++|++++||+ .+
T Consensus 239 ~~i~V~D~a~a~~~~~~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~~G~~p~~ 317 (338)
T PLN00198 239 SITHVEDVCRAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQVPTDFGD-FPSKAKLIISSEKLISEGFSFEY 317 (338)
T ss_pred ceeEHHHHHHHHHHHhhCcCcCCcEEEecCCCCHHHHHHHHHHHCCCCCCCccccc-cCCCCccccChHHHHhCCceecC
Confidence 99999999999999998765556887777889999999999998875434332221 12234567899999557999 88
Q ss_pred cHHHHHHHHHHHHHHcCCCC
Q 020266 308 PVEVSLKETIESLKEKGFVD 327 (328)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~~~ 327 (328)
+++++++++++||+.++.+.
T Consensus 318 ~l~~gi~~~~~~~~~~~~~~ 337 (338)
T PLN00198 318 GIEEIYDQTVEYFKAKGLLK 337 (338)
T ss_pred cHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999988764
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=329.66 Aligned_cols=315 Identities=40% Similarity=0.701 Sum_probs=231.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
.|+|||||||||||++|+++|+++|++|++++|+......+...........++.++.+|++|++.+.++++++|+|||+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~ 84 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHV 84 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEe
Confidence 56899999999999999999999999999999987655443332211111236889999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc---ccccCCc
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE---VCKQSEL 165 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~---~~~~~~~ 165 (328)
|+.......++....+++|+.++.+++++|++.+.+++|||+||.+++++... ....++|+.+...+ .+..+.+
T Consensus 85 A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~---~~~~~~E~~~~~~~~~~~~~~~~~ 161 (351)
T PLN02650 85 ATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEH---QKPVYDEDCWSDLDFCRRKKMTGW 161 (351)
T ss_pred CCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCC---CCCccCcccCCchhhhhccccccc
Confidence 98754333333346789999999999999998733789999999766653221 11124555332110 0111235
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcc-hHHHHHHHHhCC-CCC-CCCCccceeHHHHHHHHHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNT-SAAAVLSLIKGA-QTY-PNVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~v~v~D~a~~~~~ 242 (328)
+|+.||.++|.+++.++++++++++++||+++|||++...... +...+ ....+. ..+ ..+.++|+|++|+|++++.
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~v~V~Dva~a~~~ 240 (351)
T PLN02650 162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITAL-SLITGNEAHYSIIKQGQFVHLDDLCNAHIF 240 (351)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHH-HHhcCCccccCcCCCcceeeHHHHHHHHHH
Confidence 7999999999999999999999999999999999976542211 11111 122333 222 2345899999999999999
Q ss_pred hhcCCCCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCc-cccHHHHHHHHHHHHH
Q 020266 243 AFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE-FIPVEVSLKETIESLK 321 (328)
Q Consensus 243 ~~~~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~-~~~~~~~l~~~~~~~~ 321 (328)
+++++...|.|++++..+|+.|+++.+.+.++...++............+.+|++|+++|||+ .++++++|+++++|++
T Consensus 241 ~l~~~~~~~~~i~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~egl~~~i~~~~ 320 (351)
T PLN02650 241 LFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPARFPGIDEDLKSVEFSSKKLTDLGFTFKYSLEDMFDGAIETCR 320 (351)
T ss_pred HhcCcCcCceEEecCCCcCHHHHHHHHHHhCcccCCCCCCCCcCcccccccCChHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 998765566887777889999999999998875444433322222334456788888889999 7799999999999999
Q ss_pred HcCCCC
Q 020266 322 EKGFVD 327 (328)
Q Consensus 322 ~~~~~~ 327 (328)
.++.++
T Consensus 321 ~~~~~~ 326 (351)
T PLN02650 321 EKGLIP 326 (351)
T ss_pred HcCCCC
Confidence 887653
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=308.57 Aligned_cols=291 Identities=21% Similarity=0.261 Sum_probs=237.2
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 86 (328)
|+||||||+||||+|.|.+|++.|++|+++++ +....+.+... .+++++||++|.+.+.++++ ++|.||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~--------~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL--------QFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc--------cCceEEeccccHHHHHHHHHhcCCCEEE
Confidence 57999999999999999999999999999998 44444333221 16899999999999999997 699999
Q ss_pred EccCC--CCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 87 HTASP--FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 87 h~a~~--~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
|+||. +.+...+|. .+++.|+.||.+|+++|+++ ++++|||-|| +++||.+ ...|++|+.|..|.
T Consensus 73 HFAa~~~VgESv~~Pl-~Yy~NNv~gTl~Ll~am~~~-gv~~~vFSSt-AavYG~p----~~~PI~E~~~~~p~------ 139 (329)
T COG1087 73 HFAASISVGESVQNPL-KYYDNNVVGTLNLIEAMLQT-GVKKFIFSST-AAVYGEP----TTSPISETSPLAPI------ 139 (329)
T ss_pred ECccccccchhhhCHH-HHHhhchHhHHHHHHHHHHh-CCCEEEEecc-hhhcCCC----CCcccCCCCCCCCC------
Confidence 99997 455555665 89999999999999999999 8999999888 4677654 45899999998876
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCC-------CCcchHHHHHHHHhCC-C---CC--------CC
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP-------TLNTSAAAVLSLIKGA-Q---TY--------PN 225 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~-------~~~~~~~~~~~~~~~~-~---~~--------~~ 225 (328)
|+||.||++.|++++.+++.++++.++||.+++.|..... ..+-+...+.+...|+ + ++ |.
T Consensus 140 NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT 219 (329)
T COG1087 140 NPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGT 219 (329)
T ss_pred CcchhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCC
Confidence 7799999999999999999999999999999999964221 1122344455555555 3 33 34
Q ss_pred CCccceeHHHHHHHHHHhhcCCCCC---CcEEEe-cCccCHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCceecchHHH-
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPSAN---GRYCLV-ERVSHYSEIVNIIRELYPAFQLPEKCADD-KPHVPTYQVLKEKV- 299 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~~~---g~~~~~-~~~~~~~el~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~- 299 (328)
..||||||.|+|++.+.+++.-..+ .+||++ |..+|+.|+++.+++..| .++|....++ ..+...+..|++|+
T Consensus 220 ~iRDYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg-~~ip~~~~~RR~GDpa~l~Ad~~kA~ 298 (329)
T COG1087 220 CIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTG-RDIPVEIAPRRAGDPAILVADSSKAR 298 (329)
T ss_pred eeeeeeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhC-CcCceeeCCCCCCCCceeEeCHHHHH
Confidence 6799999999999999998743222 389987 589999999999999999 5677666554 45567889999999
Q ss_pred HhcCCc-cc-cHHHHHHHHHHHHHH
Q 020266 300 KNLGIE-FI-PVEVSLKETIESLKE 322 (328)
Q Consensus 300 ~~lg~~-~~-~~~~~l~~~~~~~~~ 322 (328)
+.|||+ .+ ++++.+++.+.|.+.
T Consensus 299 ~~Lgw~p~~~~L~~ii~~aw~W~~~ 323 (329)
T COG1087 299 QILGWQPTYDDLEDIIKDAWDWHQQ 323 (329)
T ss_pred HHhCCCcccCCHHHHHHHHHHHhhh
Confidence 999999 66 999999999999983
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=315.86 Aligned_cols=317 Identities=39% Similarity=0.624 Sum_probs=225.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
.+|+||||||+||||++++++|+++|++|++++|+..+...+.... ....+++++.+|+++++.+.++++++|+|||
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKW---KEGDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhh---ccCCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 4789999999999999999999999999999998765433322211 1124688999999999999999999999999
Q ss_pred ccCCCCCCC---CCcch-----hhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc-
Q 020266 88 TASPFYHDA---KDPQV-----ELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE- 158 (328)
Q Consensus 88 ~a~~~~~~~---~~~~~-----~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~- 158 (328)
+|+...... ..... ..++.|+.++.+|+++|++.+++++||++||.+++++.+.......+++|+.+....
T Consensus 86 ~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~ 165 (353)
T PLN02896 86 VAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDH 165 (353)
T ss_pred CCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHH
Confidence 999743221 11222 244556799999999998874478999999976443221111111356676321110
Q ss_pred --ccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC-CCC--------CCC
Q 020266 159 --VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYP--------NVT 227 (328)
Q Consensus 159 --~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~ 227 (328)
.+..+.++|+.||.++|.+++.++++++++++++||++||||+...........+.....|.. .++ ...
T Consensus 166 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 245 (353)
T PLN02896 166 VWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVNSRMGS 245 (353)
T ss_pred hhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccccccccCc
Confidence 011133579999999999999999989999999999999999865433322222223333432 111 124
Q ss_pred ccceeHHHHHHHHHHhhcCCCCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCc-c
Q 020266 228 FGWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE-F 306 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~-~ 306 (328)
++|+|++|+|++++.++..+...+.|++++..++++|+++.+.+.++...................+|++|++++||+ .
T Consensus 246 ~dfi~v~Dva~a~~~~l~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGw~p~ 325 (353)
T PLN02896 246 IALVHIEDICDAHIFLMEQTKAEGRYICCVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSIPSEISSKKLRDLGFEYK 325 (353)
T ss_pred eeEEeHHHHHHHHHHHHhCCCcCccEEecCCCCCHHHHHHHHHHhCCCCCccccccccccCccccccCHHHHHHcCCCcc
Confidence 699999999999999998765566888777889999999999999874322211111111122345688888779999 8
Q ss_pred ccHHHHHHHHHHHHHHcCCCC
Q 020266 307 IPVEVSLKETIESLKEKGFVD 327 (328)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~~~ 327 (328)
++++++++++++||++++.++
T Consensus 326 ~~l~~~i~~~~~~~~~~~~~~ 346 (353)
T PLN02896 326 YGIEEIIDQTIDCCVDHGFLP 346 (353)
T ss_pred CCHHHHHHHHHHHHHHCCCCC
Confidence 799999999999999988753
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=315.68 Aligned_cols=304 Identities=19% Similarity=0.245 Sum_probs=227.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEE-EecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 85 (328)
||+|||||||||||+++++.|+++|++|++ ++|.... ......... ....++.++.+|++|++.+.++++ ++|+|
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~V 78 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GNLMSLAPV-AQSERFAFEKVDICDRAELARVFTEHQPDCV 78 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cchhhhhhc-ccCCceEEEECCCcChHHHHHHHhhcCCCEE
Confidence 478999999999999999999999988654 4443221 111111111 112368889999999999999888 48999
Q ss_pred EEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcC--------CCccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020266 86 CHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKF--------PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (328)
Q Consensus 86 ih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~--------~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 156 (328)
||+||..... ..+.....+++|+.|+.+++++|.+. .++++||++||.+ +|+... ....+++|+.+..
T Consensus 79 ih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~--~~~~~~~E~~~~~ 155 (355)
T PRK10217 79 MHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDE-VYGDLH--STDDFFTETTPYA 155 (355)
T ss_pred EECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchh-hcCCCC--CCCCCcCCCCCCC
Confidence 9999975432 12234578999999999999999762 2457999999965 565321 1234578877655
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CCCCcccee
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVN 232 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~ 232 (328)
|. +.|+.||.++|.+++.++++++++++++||+++|||++.+. ..+..++.+...+.+ .+ +++.++|+|
T Consensus 156 p~------s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~-~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~ 228 (355)
T PRK10217 156 PS------SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE-KLIPLMILNALAGKPLPVYGNGQQIRDWLY 228 (355)
T ss_pred CC------ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcc-cHHHHHHHHHhcCCCceEeCCCCeeeCcCc
Confidence 53 67999999999999999988999999999999999986432 345556677776663 33 477899999
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCC--CCCCC----------CCCCCCCCCceecchHHH
Q 020266 233 VKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF--QLPEK----------CADDKPHVPTYQVLKEKV 299 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~k~ 299 (328)
++|+|+++..++.....+++||+++ +.+|++|+++.+++.++.. ..+.. ..........+.+|++|+
T Consensus 229 v~D~a~a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 308 (355)
T PRK10217 229 VEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYAIDASKI 308 (355)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcccccCHHHH
Confidence 9999999999998765556999986 7899999999999987631 11110 011122234567899999
Q ss_pred -HhcCCc-cccHHHHHHHHHHHHHHcC
Q 020266 300 -KNLGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 300 -~~lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
+.|||+ .++++++++++++|++.+.
T Consensus 309 ~~~lg~~p~~~l~e~l~~~~~~~~~~~ 335 (355)
T PRK10217 309 ARELGWLPQETFESGMRKTVQWYLANE 335 (355)
T ss_pred HHhcCCCCcCcHHHHHHHHHHHHHhCH
Confidence 889999 8899999999999998764
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=319.18 Aligned_cols=312 Identities=18% Similarity=0.165 Sum_probs=223.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh-h----------------hhhhhhhccCCCCcEEEEEcc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-K----------------KTRHLLALDGASERLQLFKAN 68 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~----------------~~~~~~~~~~~~~~~~~~~~D 68 (328)
..++|+|||||||||||++|+++|+++|++|++++|..... . .+.... .. ...+++++.+|
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~v~~v~~D 121 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWK-EV-SGKEIELYVGD 121 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHH-Hh-hCCcceEEECC
Confidence 45689999999999999999999999999999987532110 0 000000 00 12368899999
Q ss_pred CCCcCchHHhhC--CccEEEEccCCCCCC--CC--CcchhhhhHHHHHHHHHHHHHhcCCCcc-EEEEecchhhhccCCC
Q 020266 69 LLEEGSFDSIVD--GCDGVCHTASPFYHD--AK--DPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTSSMAAVLNTGK 141 (328)
Q Consensus 69 l~~~~~~~~~~~--~~d~vih~a~~~~~~--~~--~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~ 141 (328)
++|++.+.++++ ++|+|||+|+..... .. ......+++|+.|+.+++++|++. +++ +||++||.+ +||...
T Consensus 122 l~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~-gv~~~~V~~SS~~-vYG~~~ 199 (442)
T PLN02572 122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF-APDCHLVKLGTMG-EYGTPN 199 (442)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh-CCCccEEEEecce-ecCCCC
Confidence 999999999887 589999999763321 11 122345789999999999999997 664 899999975 565321
Q ss_pred CCCCCcccc------CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC----------
Q 020266 142 PRTPDVVVD------ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---------- 205 (328)
Q Consensus 142 ~~~~~~~~~------E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~---------- 205 (328)
....+.+++ |++++. +..+.++|+.||.++|.+++.+++.+|++++++||+++|||++...
T Consensus 200 ~~~~E~~i~~~~~~~e~~~~~---~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~ 276 (442)
T PLN02572 200 IDIEEGYITITHNGRTDTLPY---PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRL 276 (442)
T ss_pred CCCcccccccccccccccccC---CCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCccccccccccccc
Confidence 111111222 222111 1123467999999999999999999999999999999999985431
Q ss_pred ------CcchHHHHHHHHhCCC--CC--CCCCccceeHHHHHHHHHHhhcCCCCCC---cEEEecCccCHHHHHHHHHHh
Q 020266 206 ------LNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANAHIQAFEVPSANG---RYCLVERVSHYSEIVNIIREL 272 (328)
Q Consensus 206 ------~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~~~~~~~~~~~~~g---~~~~~~~~~~~~el~~~i~~~ 272 (328)
...+..++.++..|++ ++ +++.|+|+||+|+|++++.+++++...| +||++++.+|+.|+++.+.+.
T Consensus 277 ~~~~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs~~~si~el~~~i~~~ 356 (442)
T PLN02572 277 DYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFTEQFSVNELAKLVTKA 356 (442)
T ss_pred CcccchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCCCceeHHHHHHHHHHH
Confidence 0223455666677764 33 4778999999999999999998653333 688877889999999999998
Q ss_pred ---CCCCCCCCCCC---CCCCCCCceecchHHHHhcCCc-cc---cHHHHHHHHHHHHHHcCC
Q 020266 273 ---YPAFQLPEKCA---DDKPHVPTYQVLKEKVKNLGIE-FI---PVEVSLKETIESLKEKGF 325 (328)
Q Consensus 273 ---~~~~~~~~~~~---~~~~~~~~~~~~~~k~~~lg~~-~~---~~~~~l~~~~~~~~~~~~ 325 (328)
++.. .+.... ........+..|.+|+++|||+ .+ ++.+++.+++.||+++.+
T Consensus 357 ~~~~g~~-~~~~~~p~~~~~~~~~~~~~d~~k~~~LGw~p~~~~~~l~~~l~~~~~~~~~~~~ 418 (442)
T PLN02572 357 GEKLGLD-VEVISVPNPRVEAEEHYYNAKHTKLCELGLEPHLLSDSLLDSLLNFAVKYKDRVD 418 (442)
T ss_pred HHhhCCC-CCeeeCCCCcccccccccCccHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHhhcc
Confidence 6632 221111 1122223566799999669999 66 899999999999987654
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=315.53 Aligned_cols=299 Identities=20% Similarity=0.217 Sum_probs=222.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh-hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+.|+|||||||||||++|+++|+++|++|++++|..... ....... ..++++++.+|+.+.. +.++|+||
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~----~~~~~~~~~~Di~~~~-----~~~~D~Vi 189 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLF----GNPRFELIRHDVVEPI-----LLEVDQIY 189 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhc----cCCceEEEECcccccc-----ccCCCEEE
Confidence 467899999999999999999999999999999854321 1111111 1246888999997753 45799999
Q ss_pred EccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 87 HTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 87 h~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
|+|+.... .........+++|+.|+.+|+++|++. +. +|||+||.+ +||.. ...+.+|+.+.... +..+.+
T Consensus 190 HlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g~-r~V~~SS~~-VYg~~----~~~p~~E~~~~~~~-p~~p~s 261 (436)
T PLN02166 190 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-RFLLTSTSE-VYGDP----LEHPQKETYWGNVN-PIGERS 261 (436)
T ss_pred ECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECcHH-HhCCC----CCCCCCccccccCC-CCCCCC
Confidence 99986432 112233478899999999999999997 54 899999975 55432 12355665321110 111236
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC-cchHHHHHHHHhCCCC--CC--CCCccceeHHHHHHHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL-NTSAAAVLSLIKGAQT--YP--NVTFGWVNVKDVANAH 240 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~--~~--~~~~~~v~v~D~a~~~ 240 (328)
.|+.+|..+|.+++.+++.++++++++||+++|||++.... ..+..++.++..+.++ ++ ++.++|+|++|+++++
T Consensus 262 ~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai 341 (436)
T PLN02166 262 CYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGL 341 (436)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHH
Confidence 79999999999999999888999999999999999864322 3355677788877742 33 5689999999999999
Q ss_pred HHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHHHHHHH
Q 020266 241 IQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKETI 317 (328)
Q Consensus 241 ~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~ 317 (328)
..+++.. ..|+||+++ +.+|++|+++.+++.++......+.+..........+|++|+ +.|||+ .++++++|++++
T Consensus 342 ~~~~~~~-~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~~~LGw~P~~sl~egl~~~i 420 (436)
T PLN02166 342 VALMEGE-HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKELLNWEPKISLREGLPLMV 420 (436)
T ss_pred HHHHhcC-CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998754 457999985 789999999999999874321111122222234567899999 889999 789999999999
Q ss_pred HHHHHcC
Q 020266 318 ESLKEKG 324 (328)
Q Consensus 318 ~~~~~~~ 324 (328)
+|++.+-
T Consensus 421 ~~~~~~~ 427 (436)
T PLN02166 421 SDFRNRI 427 (436)
T ss_pred HHHHHHh
Confidence 9997754
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=315.95 Aligned_cols=306 Identities=17% Similarity=0.201 Sum_probs=221.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+.|+|||||||||||++|+++|+++ |++|++++|+..+...+..... .....+++++.+|++|.+.+.++++++|+||
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi 91 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDT-VPWSGRIQFHRINIKHDSRLEGLIKMADLTI 91 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcccc-ccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence 4678999999999999999999998 5999999987654332211100 0112469999999999999999999999999
Q ss_pred EccCCCCC--CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc------
Q 020266 87 HTASPFYH--DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE------ 158 (328)
Q Consensus 87 h~a~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~------ 158 (328)
|+|+.... ...++ .+.+..|+.++.+++++|++. + ++|||+||.+ +||... ..+++|+.+..+.
T Consensus 92 HlAa~~~~~~~~~~~-~~~~~~n~~gt~~ll~aa~~~-~-~r~v~~SS~~-vYg~~~----~~~~~e~~p~~~~~~~~~~ 163 (386)
T PLN02427 92 NLAAICTPADYNTRP-LDTIYSNFIDALPVVKYCSEN-N-KRLIHFSTCE-VYGKTI----GSFLPKDHPLRQDPAFYVL 163 (386)
T ss_pred EcccccChhhhhhCh-HHHHHHHHHHHHHHHHHHHhc-C-CEEEEEeeee-eeCCCc----CCCCCcccccccccccccc
Confidence 99997432 12223 256678999999999999887 5 7999999975 565321 1122232221110
Q ss_pred ----------ccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC---------C-cchHHHHHHHHh
Q 020266 159 ----------VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---------L-NTSAAAVLSLIK 218 (328)
Q Consensus 159 ----------~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~---------~-~~~~~~~~~~~~ 218 (328)
....+.+.|+.+|.++|.+++.+++.++++++++||++||||++... . ..+..++.++..
T Consensus 164 ~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 243 (386)
T PLN02427 164 KEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLR 243 (386)
T ss_pred cccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhc
Confidence 00112356999999999999999888899999999999999975311 1 123334456666
Q ss_pred CCCC--C--CCCCccceeHHHHHHHHHHhhcCCC-C-CCcEEEec--CccCHHHHHHHHHHhCCCCCC-CC------CCC
Q 020266 219 GAQT--Y--PNVTFGWVNVKDVANAHIQAFEVPS-A-NGRYCLVE--RVSHYSEIVNIIRELYPAFQL-PE------KCA 283 (328)
Q Consensus 219 ~~~~--~--~~~~~~~v~v~D~a~~~~~~~~~~~-~-~g~~~~~~--~~~~~~el~~~i~~~~~~~~~-~~------~~~ 283 (328)
+++. + +.+.++|+|++|+|++++.+++++. . +++||+++ +.+|+.|+++.+.+.+|.... +. ...
T Consensus 244 ~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~ 323 (386)
T PLN02427 244 REPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPTVDVS 323 (386)
T ss_pred CCCeEEECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccccccC
Confidence 6642 2 4677899999999999999998763 2 34899986 389999999999999874211 10 000
Q ss_pred CC------CCCCCceecchHHH-HhcCCc-cccHHHHHHHHHHHHHH
Q 020266 284 DD------KPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKETIESLKE 322 (328)
Q Consensus 284 ~~------~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~ 322 (328)
.. ......+..|.+|+ +.|||+ .++++++|+++++|++.
T Consensus 324 ~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~ 370 (386)
T PLN02427 324 SKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHK 370 (386)
T ss_pred cccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHH
Confidence 00 11234556799999 889999 89999999999999865
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=311.94 Aligned_cols=302 Identities=17% Similarity=0.252 Sum_probs=224.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC-CcCchHHhhCCccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL-EEGSFDSIVDGCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~d~vi 86 (328)
||+|||||||||||++|+++|+++ |++|++++|+...... .. ...+++++.+|++ +.+.+.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~---~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD---LV----NHPRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH---hc----cCCCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 468999999999999999999986 6999999986543221 11 1246899999998 6677888888999999
Q ss_pred EccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCc-cccccCC
Q 020266 87 HTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP-EVCKQSE 164 (328)
Q Consensus 87 h~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~-~~~~~~~ 164 (328)
|+|+.... .........+++|+.++.+++++|++. + ++|||+||++ +||.. ...+++|++++.. .....+.
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~-~~~v~~SS~~-vyg~~----~~~~~~ee~~~~~~~~~~~p~ 146 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSE-VYGMC----PDEEFDPEASPLVYGPINKPR 146 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C-CeEEEEecce-eeccC----CCcCcCccccccccCcCCCcc
Confidence 99986432 122233477899999999999999987 5 6999999975 56533 1234566543221 0011234
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC-------CcchHHHHHHHHhCCC--CC--CCCCccceeH
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT-------LNTSAAAVLSLIKGAQ--TY--PNVTFGWVNV 233 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v 233 (328)
+.|+.+|.++|.+++.++.+++++++++||+++|||+..+. ...+..++.++..+.+ .. +++.++|+|+
T Consensus 147 ~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v 226 (347)
T PRK11908 147 WIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDI 226 (347)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccH
Confidence 67999999999999999988999999999999999975421 2235566777777774 22 4788999999
Q ss_pred HHHHHHHHHhhcCCC--C-CCcEEEec-C-ccCHHHHHHHHHHhCCCCCCC------CCC---CC------CCCCCCcee
Q 020266 234 KDVANAHIQAFEVPS--A-NGRYCLVE-R-VSHYSEIVNIIRELYPAFQLP------EKC---AD------DKPHVPTYQ 293 (328)
Q Consensus 234 ~D~a~~~~~~~~~~~--~-~g~~~~~~-~-~~~~~el~~~i~~~~~~~~~~------~~~---~~------~~~~~~~~~ 293 (328)
+|++++++.+++++. . +++||+++ + .+|++|+++.+.+.++..+-. ... .. .......+.
T Consensus 227 ~D~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (347)
T PRK11908 227 DDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRV 306 (347)
T ss_pred HHHHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcchhcccc
Confidence 999999999998753 2 45899986 3 699999999999887742110 000 00 001112445
Q ss_pred cchHHH-HhcCCc-cccHHHHHHHHHHHHHHcC
Q 020266 294 VLKEKV-KNLGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 294 ~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
.|++|+ +.|||+ .++++++++++++|++++.
T Consensus 307 ~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~ 339 (347)
T PRK11908 307 PKIDNTMQELGWAPKTTMDDALRRIFEAYRGHV 339 (347)
T ss_pred CChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 688999 899999 8899999999999998754
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=309.40 Aligned_cols=305 Identities=19% Similarity=0.141 Sum_probs=229.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--ccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~ 84 (328)
+++|+|||||||||||+++++.|+++|++|++++|+............ ...++.++.+|++|++++.++++. +|+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN---LAKKIEDHFGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh---hcCCceEEEccCCCHHHHHHHHhhcCCCE
Confidence 357899999999999999999999999999999997665433222111 123577899999999999998884 699
Q ss_pred EEEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 85 VCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 85 vih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
|||+|+.... .....+...+++|+.++.+++++++..+.+++||++||.+ +|+... ...+++|+.+..|
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~-vyg~~~---~~~~~~e~~~~~p------ 148 (349)
T TIGR02622 79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDK-CYRNDE---WVWGYRETDPLGG------ 148 (349)
T ss_pred EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechh-hhCCCC---CCCCCccCCCCCC------
Confidence 9999986322 2222344788999999999999998863378999999975 554321 1234667665544
Q ss_pred CchhhhhhHHHHHHHHHHHHhc-------CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC-C--CCCCccceeH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEK-------SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT-Y--PNVTFGWVNV 233 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~v~v 233 (328)
.++|+.+|.++|.+++.+++++ +++++++||+++|||++......+..++..+..|.+. + +++.++|+|+
T Consensus 149 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~rd~i~v 228 (349)
T TIGR02622 149 HDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVIIRNPDATRPWQHV 228 (349)
T ss_pred CCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEECCCCcccceeeH
Confidence 3669999999999999987764 8999999999999997533234456667777777642 2 5789999999
Q ss_pred HHHHHHHHHhhcCC-----CCCCcEEEec---CccCHHHHHHHHHHhCCCCCCCCCCC---CCCCCCCceecchHHH-Hh
Q 020266 234 KDVANAHIQAFEVP-----SANGRYCLVE---RVSHYSEIVNIIRELYPAFQLPEKCA---DDKPHVPTYQVLKEKV-KN 301 (328)
Q Consensus 234 ~D~a~~~~~~~~~~-----~~~g~~~~~~---~~~~~~el~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~k~-~~ 301 (328)
+|+|++++.+++.. ..++.||+++ +..++.|+++.+.+.++..++..... ..........+|++|+ +.
T Consensus 229 ~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 308 (349)
T TIGR02622 229 LEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTL 308 (349)
T ss_pred HHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHHHHH
Confidence 99999999887642 2246999974 58999999999998876433222111 1122234567899999 78
Q ss_pred cCCc-cccHHHHHHHHHHHHHHcC
Q 020266 302 LGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 302 lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
|||+ .++++++++++++|+++..
T Consensus 309 lgw~p~~~l~~gi~~~i~w~~~~~ 332 (349)
T TIGR02622 309 LGWHPRWGLEEAVSRTVDWYKAWL 332 (349)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999 8899999999999998753
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=308.72 Aligned_cols=298 Identities=17% Similarity=0.158 Sum_probs=223.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++|+|||||||||||++|+++|+++||+|++++|....... . .....+++.+|++|.+.+..+++++|+|||
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~--~------~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih 91 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS--E------DMFCHEFHLVDLRVMENCLKVTKGVDHVFN 91 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccc--c------ccccceEEECCCCCHHHHHHHHhCCCEEEE
Confidence 46889999999999999999999999999999986432111 0 011357889999999888888889999999
Q ss_pred ccCCCCCC--CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCC--CCCccccccC
Q 020266 88 TASPFYHD--AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW--FSDPEVCKQS 163 (328)
Q Consensus 88 ~a~~~~~~--~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~--~~~~~~~~~~ 163 (328)
+|+.+... ........++.|+.++.+|+++|++. ++++|||+||.+ +|+.........++.|++ +..|
T Consensus 92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk~~V~~SS~~-vYg~~~~~~~~~~~~E~~~~p~~p------ 163 (370)
T PLN02695 92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVKRFFYASSAC-IYPEFKQLETNVSLKESDAWPAEP------ 163 (370)
T ss_pred cccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCCEEEEeCchh-hcCCccccCcCCCcCcccCCCCCC------
Confidence 99865321 11122355778999999999999987 889999999975 665432111122456654 3333
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--c-chHHHHHHHHhC-CC--CC--CCCCccceeHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--N-TSAAAVLSLIKG-AQ--TY--PNVTFGWVNVKD 235 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~-~~~~~~~~~~~~-~~--~~--~~~~~~~v~v~D 235 (328)
.+.|+.+|..+|.++..++..++++++++||+++|||+..... . ....++.++..+ .+ ++ +++.++|+|++|
T Consensus 164 ~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D 243 (370)
T PLN02695 164 QDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDE 243 (370)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHH
Confidence 4679999999999999998889999999999999999754221 1 134555666554 32 33 467899999999
Q ss_pred HHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHH
Q 020266 236 VANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVS 312 (328)
Q Consensus 236 ~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~ 312 (328)
+++++++++++. ..+.||+++ +.+|++|+++.+.+..|.. .+....+.......+.+|++|+ +.|||+ .++++++
T Consensus 244 ~a~ai~~~~~~~-~~~~~nv~~~~~~s~~el~~~i~~~~g~~-~~i~~~~~~~~~~~~~~d~sk~~~~lgw~p~~~l~e~ 321 (370)
T PLN02695 244 CVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEIALSFENKK-LPIKHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDG 321 (370)
T ss_pred HHHHHHHHHhcc-CCCceEecCCCceeHHHHHHHHHHHhCCC-CCceecCCCCCccccccCHHHHHHhcCCCCCCCHHHH
Confidence 999999988764 456899986 8899999999999988742 2221111122223456899999 889999 7799999
Q ss_pred HHHHHHHHHHc
Q 020266 313 LKETIESLKEK 323 (328)
Q Consensus 313 l~~~~~~~~~~ 323 (328)
++++++|++.+
T Consensus 322 i~~~~~~~~~~ 332 (370)
T PLN02695 322 LRITYFWIKEQ 332 (370)
T ss_pred HHHHHHHHHHH
Confidence 99999999764
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=313.29 Aligned_cols=300 Identities=19% Similarity=0.214 Sum_probs=221.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh-hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
++|+|||||||||||++|+++|+++|++|++++|..... ...... ....+++++.+|+.++. +.++|+||
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~----~~~~~~~~i~~D~~~~~-----l~~~D~Vi 188 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHH----FSNPNFELIRHDVVEPI-----LLEVDQIY 188 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhh----ccCCceEEEECCccChh-----hcCCCEEE
Confidence 468999999999999999999999999999998753321 111111 11346888999997753 45799999
Q ss_pred EccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 87 HTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 87 h~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
|+|+.... ....+....+++|+.++.+|+++|++. ++ +|||+||.+ +|+.. ...+.+|+...... +..+.+
T Consensus 189 HlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g~-r~V~~SS~~-VYg~~----~~~p~~E~~~~~~~-P~~~~s 260 (442)
T PLN02206 189 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSE-VYGDP----LQHPQVETYWGNVN-PIGVRS 260 (442)
T ss_pred EeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECChH-HhCCC----CCCCCCccccccCC-CCCccc
Confidence 99986432 112233578899999999999999998 65 899999975 55432 22345565321110 111246
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC-CcchHHHHHHHHhCCC--CC--CCCCccceeHHHHHHHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT-LNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANAH 240 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~~~ 240 (328)
.|+.+|.++|.++..+++.++++++++||+++|||+.... ...+..++.+++.+++ .+ +++.++|+|++|+|+++
T Consensus 261 ~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai 340 (442)
T PLN02206 261 CYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 340 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHH
Confidence 7999999999999999888899999999999999975422 2334566777777764 23 45689999999999999
Q ss_pred HHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHHHHHHH
Q 020266 241 IQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKETI 317 (328)
Q Consensus 241 ~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~ 317 (328)
+.++++. ..|.||+++ +.+|++|+++.+++.++........+..........+|++|+ +++||+ .++++|+|++++
T Consensus 341 ~~a~e~~-~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~sKa~~~LGw~P~~~l~egl~~~~ 419 (442)
T PLN02206 341 MRLMEGE-HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMV 419 (442)
T ss_pred HHHHhcC-CCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998764 457999986 889999999999999863211111111112233456899999 889999 789999999999
Q ss_pred HHHHHcCC
Q 020266 318 ESLKEKGF 325 (328)
Q Consensus 318 ~~~~~~~~ 325 (328)
+|+++.-+
T Consensus 420 ~~~~~~~~ 427 (442)
T PLN02206 420 KDFRQRVF 427 (442)
T ss_pred HHHHHhhh
Confidence 99987543
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=303.35 Aligned_cols=300 Identities=18% Similarity=0.167 Sum_probs=224.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC--hhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhC--Ccc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVD--GCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 83 (328)
|+|||||||||||++|+++|+++|++|++++|+... ...+..+.... ....+++++.+|++|.+.+.++++ ++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999997642 12222211100 012468899999999999999988 469
Q ss_pred EEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCc---cEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020266 84 GVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSI---KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (328)
Q Consensus 84 ~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 159 (328)
+|||+|+..... ........+++|+.|+.+++++|++. ++ .+|||+||.+ +||.. ...+++|+.+..|.
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~-~~~~~~~~v~~SS~~-vyg~~----~~~~~~E~~~~~p~- 153 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTL-GLIKSVKFYQASTSE-LYGKV----QEIPQNETTPFYPR- 153 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHh-CCCcCeeEEEeccHH-hhCCC----CCCCCCCCCCCCCC-
Confidence 999999974432 11222366788999999999999986 43 3899999975 55432 23457788776653
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC--CcchHHHHHHHHhCCC---CC--CCCCcccee
Q 020266 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT--LNTSAAAVLSLIKGAQ---TY--PNVTFGWVN 232 (328)
Q Consensus 160 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~---~~--~~~~~~~v~ 232 (328)
+.|+.||.++|.+++.++.++++++++.|+.++|||+.... ...+..++.++..+.+ .+ +++.++|+|
T Consensus 154 -----~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~ 228 (343)
T TIGR01472 154 -----SPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGH 228 (343)
T ss_pred -----ChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCcee
Confidence 67999999999999999988899999999999999974321 1223344555666652 22 478999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCC-----------C-------CCC---CCCCCCC
Q 020266 233 VKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLP-----------E-------KCA---DDKPHVP 290 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~-----------~-------~~~---~~~~~~~ 290 (328)
++|+|++++.+++++. .+.||+++ +.+|++|+++.+.+.++..... . ... .......
T Consensus 229 V~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T TIGR01472 229 AKDYVEAMWLMLQQDK-PDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVD 307 (343)
T ss_pred HHHHHHHHHHHHhcCC-CccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCCCccc
Confidence 9999999999998753 46899985 8899999999999998842100 0 000 0112223
Q ss_pred ceecchHHH-HhcCCc-cccHHHHHHHHHHHHHH
Q 020266 291 TYQVLKEKV-KNLGIE-FIPVEVSLKETIESLKE 322 (328)
Q Consensus 291 ~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~ 322 (328)
.+.+|++|+ ++|||+ .++++|+|+++++++++
T Consensus 308 ~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 308 LLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred hhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 456799999 889999 88999999999999875
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=328.25 Aligned_cols=306 Identities=16% Similarity=0.239 Sum_probs=229.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc-hHHhhCCccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIVDGCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~ 84 (328)
.++|+|||||||||||++|+++|+++ ||+|++++|....... .. ..++++++.+|++|... +.++++++|+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~---~~----~~~~~~~~~gDl~d~~~~l~~~l~~~D~ 385 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR---FL----GHPRFHFVEGDISIHSEWIEYHIKKCDV 385 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh---hc----CCCceEEEeccccCcHHHHHHHhcCCCE
Confidence 35889999999999999999999986 7999999997643221 11 12468999999998765 5677889999
Q ss_pred EEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc-c
Q 020266 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK-Q 162 (328)
Q Consensus 85 vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~-~ 162 (328)
|||+||..... ........+++|+.++.+++++|++. + ++|||+||.+ +||.. ...+++|+++..+..+. .
T Consensus 386 ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~-~~~V~~SS~~-vyg~~----~~~~~~E~~~~~~~~p~~~ 458 (660)
T PRK08125 386 VLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N-KRIIFPSTSE-VYGMC----TDKYFDEDTSNLIVGPINK 458 (660)
T ss_pred EEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C-CeEEEEcchh-hcCCC----CCCCcCccccccccCCCCC
Confidence 99999874421 12223467899999999999999998 5 7999999975 56532 23467787654211111 1
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC-------CcchHHHHHHHHhCCCC--C--CCCCccce
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT-------LNTSAAAVLSLIKGAQT--Y--PNVTFGWV 231 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~--~--~~~~~~~v 231 (328)
+.+.|+.||.++|.+++.+++.++++++++||+++|||++... ...+..++.++..+++. . +++.++|+
T Consensus 459 p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i 538 (660)
T PRK08125 459 QRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFT 538 (660)
T ss_pred CccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeecee
Confidence 3457999999999999999988999999999999999975321 12355667777777642 2 46789999
Q ss_pred eHHHHHHHHHHhhcCCC--C-CCcEEEec-C-ccCHHHHHHHHHHhCCCCCC----CCCCCC-----------CCCCCCc
Q 020266 232 NVKDVANAHIQAFEVPS--A-NGRYCLVE-R-VSHYSEIVNIIRELYPAFQL----PEKCAD-----------DKPHVPT 291 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~~--~-~g~~~~~~-~-~~~~~el~~~i~~~~~~~~~----~~~~~~-----------~~~~~~~ 291 (328)
|++|+|++++.+++++. . +++||+++ + .+|++|+++.+.+.++.... +..... .......
T Consensus 539 ~v~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (660)
T PRK08125 539 DIRDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQDVEH 618 (660)
T ss_pred eHHHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccccccccccccc
Confidence 99999999999998753 2 34899986 3 69999999999999874221 111000 0012234
Q ss_pred eecchHHH-HhcCCc-cccHHHHHHHHHHHHHHcCCC
Q 020266 292 YQVLKEKV-KNLGIE-FIPVEVSLKETIESLKEKGFV 326 (328)
Q Consensus 292 ~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~~~ 326 (328)
+.+|++|+ +.|||+ ..+++++|+++++|++++..+
T Consensus 619 ~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~ 655 (660)
T PRK08125 619 RKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_pred cCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhcccc
Confidence 45799999 889999 889999999999999987764
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=280.67 Aligned_cols=304 Identities=21% Similarity=0.208 Sum_probs=234.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--Cc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~ 82 (328)
.+.++++||||.||||++.+.++...- ++.+.++.-.-... .+.++.....++.+++.+|+.+...+..++. .+
T Consensus 4 ~~~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~--~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~i 81 (331)
T KOG0747|consen 4 YKEKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN--LKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEI 81 (331)
T ss_pred CccceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc--cchhhhhccCCCceEeeccccchHHHHhhhccCch
Confidence 345899999999999999999999863 55555554111111 1222233345789999999999888877776 68
Q ss_pred cEEEEccCCCC-CCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 83 DGVCHTASPFY-HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 83 d~vih~a~~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
|.|+|.|+... .....+.....+.|+.++..|+++++..+++++|||+||.. +||+.. ......|.++++|.
T Consensus 82 d~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTde-VYGds~---~~~~~~E~s~~nPt--- 154 (331)
T KOG0747|consen 82 DTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDE-VYGDSD---EDAVVGEASLLNPT--- 154 (331)
T ss_pred hhhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccc-eecCcc---ccccccccccCCCC---
Confidence 99999999733 22222333778889999999999999998999999999985 555331 22223388888876
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC--CCC--CCCCccceeHHHHH
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTFGWVNVKDVA 237 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~v~v~D~a 237 (328)
++|+++|+++|.+++++.+.++++++++|.++||||++.+. ..++.++.....++ ++- |.+.++|+|++|++
T Consensus 155 ---npyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~-klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ 230 (331)
T KOG0747|consen 155 ---NPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPE-KLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVS 230 (331)
T ss_pred ---CchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChH-HHhHHHHHHHHhCCCcceecCcccceeeEeHHHHH
Confidence 77999999999999999999999999999999999997653 44567777666666 333 46789999999999
Q ss_pred HHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCC----CCCC---CCCCCCCCCCCceecchHHHHhcCCc-ccc
Q 020266 238 NAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPA----FQLP---EKCADDKPHVPTYQVLKEKVKNLGIE-FIP 308 (328)
Q Consensus 238 ~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~k~~~lg~~-~~~ 308 (328)
+++..+++.++.+.+||++. ...+.-|+++.+.+.+.. ...+ ...+.++....++.++.+|++.|||+ .++
T Consensus 231 ea~~~v~~Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik~LGw~~~~p 310 (331)
T KOG0747|consen 231 EAFKAVLEKGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIKKLGWRPTTP 310 (331)
T ss_pred HHHHHHHhcCCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHHhcCCcccCc
Confidence 99999999866566999985 889989998888876542 2211 22234455667899999999999999 899
Q ss_pred HHHHHHHHHHHHHHc
Q 020266 309 VEVSLKETIESLKEK 323 (328)
Q Consensus 309 ~~~~l~~~~~~~~~~ 323 (328)
+++||+.+++||.++
T Consensus 311 ~~eGLrktie~y~~~ 325 (331)
T KOG0747|consen 311 WEEGLRKTIEWYTKN 325 (331)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999664
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=323.41 Aligned_cols=309 Identities=19% Similarity=0.213 Sum_probs=230.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHC--CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh--CC
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV--DG 81 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~ 81 (328)
.+++|+|||||||||||++|+++|+++ |++|++++|..... ....+.. .....+++++.+|++|++.+..++ .+
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~-~~~~l~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 80 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCS-NLKNLNP-SKSSPNFKFVKGDIASADLVNYLLITEG 80 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccc-hhhhhhh-cccCCCeEEEECCCCChHHHHHHHhhcC
Confidence 346789999999999999999999998 68999998753211 1111111 111347899999999988887765 47
Q ss_pred ccEEEEccCCCCCCC-CCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020266 82 CDGVCHTASPFYHDA-KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (328)
Q Consensus 82 ~d~vih~a~~~~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 160 (328)
+|+|||+|+...... .......+++|+.++.+|+++|++.+.+++|||+||.+ +||..... .....+|+++..|
T Consensus 81 ~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~-vyg~~~~~-~~~~~~E~~~~~p--- 155 (668)
T PLN02260 81 IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDE-VYGETDED-ADVGNHEASQLLP--- 155 (668)
T ss_pred CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchH-HhCCCccc-cccCccccCCCCC---
Confidence 999999999754321 12233678899999999999999974478999999975 55433111 1112356655554
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CCCCccceeHHHH
Q 020266 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDV 236 (328)
Q Consensus 161 ~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~ 236 (328)
.+.|+.+|.++|.+++.++++++++++++||++||||++... ..+..++..+..+.+ +. +++.++|+|++|+
T Consensus 156 ---~~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~-~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dv 231 (668)
T PLN02260 156 ---TNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE-KLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDV 231 (668)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcc-cHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHH
Confidence 366999999999999999888899999999999999986432 234455566666663 33 4678899999999
Q ss_pred HHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCC-CC-CCCCCCCCCceecchHHHHhcCCc-cccHHHH
Q 020266 237 ANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLP-EK-CADDKPHVPTYQVLKEKVKNLGIE-FIPVEVS 312 (328)
Q Consensus 237 a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~k~~~lg~~-~~~~~~~ 312 (328)
|+++..+++++..+++||+++ +.+++.|+++.+++.+|..... .. ....+.....+.+|++|++++||+ .++++|+
T Consensus 232 a~a~~~~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~~lGw~p~~~~~eg 311 (668)
T PLN02260 232 AEAFEVVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLKKLGWQERTSWEEG 311 (668)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHHHcCCCCCCCHHHH
Confidence 999999998765567999986 7899999999999998843211 11 111222334567899999889999 8899999
Q ss_pred HHHHHHHHHHcCC
Q 020266 313 LKETIESLKEKGF 325 (328)
Q Consensus 313 l~~~~~~~~~~~~ 325 (328)
++++++||+.++.
T Consensus 312 l~~~i~w~~~~~~ 324 (668)
T PLN02260 312 LKKTMEWYTSNPD 324 (668)
T ss_pred HHHHHHHHHhChh
Confidence 9999999988754
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=299.01 Aligned_cols=304 Identities=19% Similarity=0.224 Sum_probs=224.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCe-EEEEecCCC--ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 84 (328)
|+|||||||||||++|+++|+++|++ |+++++... ....+..+ ....++.++.+|++|.+++.++++ ++|+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADV----SDSERYVFEHADICDRAELDRIFAQHQPDA 76 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhc----ccCCceEEEEecCCCHHHHHHHHHhcCCCE
Confidence 47999999999999999999999976 555555321 11111111 112457889999999999999887 4899
Q ss_pred EEEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcC--------CCccEEEEecchhhhccCCCC-CC-----CCccc
Q 020266 85 VCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKF--------PSIKRVVLTSSMAAVLNTGKP-RT-----PDVVV 149 (328)
Q Consensus 85 vih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~--------~~~~~~v~~SS~~~~~~~~~~-~~-----~~~~~ 149 (328)
|||+|+.... .........+++|+.|+.+++++|++. .++++|||+||.+ +|+.... .. ...++
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~~~~ 155 (352)
T PRK10084 77 VMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEELPLF 155 (352)
T ss_pred EEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccCCCc
Confidence 9999997432 112233578999999999999999863 1456899999976 5543210 00 01235
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PN 225 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~ 225 (328)
+|+++..| .+.|+.||.++|.+++.++++++++++++||+.+|||+... ...+..++.++..+.+ .+ ++
T Consensus 156 ~E~~~~~p------~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~-~~~~~~~~~~~~~~~~~~~~~~g~ 228 (352)
T PRK10084 156 TETTAYAP------SSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFP-EKLIPLVILNALEGKPLPIYGKGD 228 (352)
T ss_pred cccCCCCC------CChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCc-cchHHHHHHHHhcCCCeEEeCCCC
Confidence 77766555 36799999999999999998899999999999999998533 2335556666666653 33 47
Q ss_pred CCccceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCC-C--CCCC-----CCCCCCCCCceecch
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF-Q--LPEK-----CADDKPHVPTYQVLK 296 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~-~--~~~~-----~~~~~~~~~~~~~~~ 296 (328)
+.++|+|++|+|+++..+++++..+++||+++ +..+++|+++.+++.++.. + .+.. ..........+.+|+
T Consensus 229 ~~~~~v~v~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~ 308 (352)
T PRK10084 229 QIRDWLYVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDA 308 (352)
T ss_pred eEEeeEEHHHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCCceeeeCH
Confidence 78999999999999999988755556999986 7899999999999988742 1 1110 011122234567899
Q ss_pred HHH-HhcCCc-cccHHHHHHHHHHHHHHcCC
Q 020266 297 EKV-KNLGIE-FIPVEVSLKETIESLKEKGF 325 (328)
Q Consensus 297 ~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~~ 325 (328)
+|+ +.+||+ .++++++|+++++|++++..
T Consensus 309 ~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 339 (352)
T PRK10084 309 SKISRELGWKPQETFESGIRKTVEWYLANTE 339 (352)
T ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHHhCHH
Confidence 999 789999 78999999999999987643
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=297.82 Aligned_cols=306 Identities=21% Similarity=0.235 Sum_probs=226.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh-hhhhhhcc-CCCCcEEEEEccCCCcCchHHhhC--Cc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-TRHLLALD-GASERLQLFKANLLEEGSFDSIVD--GC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~--~~ 82 (328)
|++|+|+|||||||||++|+++|+++|++|++++|....... ..+..... ....+++++.+|++|++.+.++++ ++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 346789999999999999999999999999999875433211 11111111 112468899999999999988886 68
Q ss_pred cEEEEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 83 DGVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 83 d~vih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
|+|||+|+.... .........+++|+.++.+++++|++. ++++||++||++ +|+.. ...+++|+.+..+.
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~-vyg~~----~~~~~~E~~~~~~~--- 153 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GCKKLVFSSSAT-VYGQP----EEVPCTEEFPLSAT--- 153 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccHH-HhCCC----CCCCCCCCCCCCCC---
Confidence 999999986432 122334478999999999999999987 778999999964 55432 34568888776653
Q ss_pred cCCchhhhhhHHHHHHHHHHHHh-cCccEEEEcCCcccCCCCCC--------CCcchHHHHHHHHhCC-C---C------
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQP--------TLNTSAAAVLSLIKGA-Q---T------ 222 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~~~~-~---~------ 222 (328)
+.|+.+|.++|.+++.++.. .+++++++|++++||++... ....+..++.++..++ + .
T Consensus 154 ---~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (352)
T PLN02240 154 ---NPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYP 230 (352)
T ss_pred ---CHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCC
Confidence 67999999999999998764 57899999999999974321 1112334555555443 2 1
Q ss_pred --CCCCCccceeHHHHHHHHHHhhcCC----CC-CCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCC-CCCCCCcee
Q 020266 223 --YPNVTFGWVNVKDVANAHIQAFEVP----SA-NGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCAD-DKPHVPTYQ 293 (328)
Q Consensus 223 --~~~~~~~~v~v~D~a~~~~~~~~~~----~~-~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~-~~~~~~~~~ 293 (328)
-+.+.++|+|++|+|++++.++.+. .. +++||+++ +.+|++|+++.+.+.++.. .+....+ .......+.
T Consensus 231 ~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~~ 309 (352)
T PLN02240 231 TKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKK-IPLKLAPRRPGDAEEVY 309 (352)
T ss_pred CCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCC-CCceeCCCCCCChhhhh
Confidence 1367789999999999999888642 23 34999975 8899999999999998742 2322211 122234456
Q ss_pred cchHHH-HhcCCc-cccHHHHHHHHHHHHHHcCC
Q 020266 294 VLKEKV-KNLGIE-FIPVEVSLKETIESLKEKGF 325 (328)
Q Consensus 294 ~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~~ 325 (328)
.|++|+ +.|||+ ..+++++++++++|+++++.
T Consensus 310 ~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 343 (352)
T PLN02240 310 ASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPY 343 (352)
T ss_pred cCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcc
Confidence 799999 889999 77999999999999988763
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=295.81 Aligned_cols=304 Identities=17% Similarity=0.145 Sum_probs=226.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh--hhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhC--C
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD--G 81 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~--~ 81 (328)
.++|+|||||||||||++++++|+++|++|++++|+.... ..+....... ....+++++.+|++|.+.+.++++ .
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 3578999999999999999999999999999999865431 1222211100 112468899999999999998887 4
Q ss_pred ccEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCcc-----EEEEecchhhhccCCCCCCCCccccCCCCC
Q 020266 82 CDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIK-----RVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 82 ~d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-----~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
+|+|||+|+..... ........+++|+.|+.+++++|++. +++ +||++||.+ +||.. . .+++|+.+.
T Consensus 84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~~~~~~v~~Ss~~-vyg~~----~-~~~~E~~~~ 156 (340)
T PLN02653 84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLH-GQETGRQIKYYQAGSSE-MYGST----P-PPQSETTPF 156 (340)
T ss_pred CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHh-ccccccceeEEEeccHH-HhCCC----C-CCCCCCCCC
Confidence 79999999974322 12233466789999999999999987 543 899999965 66532 1 267888776
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCCC--CC---CCCCc
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQ--TY---PNVTF 228 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~--~~---~~~~~ 228 (328)
.|. +.|+.||.++|.+++.++.+++++++..|+.++|||+..... ..+..++.++..+.+ .+ +++.+
T Consensus 157 ~p~------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r 230 (340)
T PLN02653 157 HPR------SPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASR 230 (340)
T ss_pred CCC------ChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCccee
Confidence 653 679999999999999999999999999999999999644321 112233444555552 22 46789
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCC---CCCCCCCC-CCCCCCceecchHHH-Hhc
Q 020266 229 GWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF---QLPEKCAD-DKPHVPTYQVLKEKV-KNL 302 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~k~-~~l 302 (328)
+|+|++|+|++++.++++. ..+.||+++ +.+|++|+++.+.+.++.. .+...... .......+.+|++|+ +.|
T Consensus 231 d~i~v~D~a~a~~~~~~~~-~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 309 (340)
T PLN02653 231 DWGFAGDYVEAMWLMLQQE-KPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVL 309 (340)
T ss_pred cceeHHHHHHHHHHHHhcC-CCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHHHHh
Confidence 9999999999999999875 356899975 8899999999999998742 11111111 122233456799999 889
Q ss_pred CCc-cccHHHHHHHHHHHHHHcC
Q 020266 303 GIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 303 g~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
||+ .++++++|+++++|+++.-
T Consensus 310 gw~p~~~l~~gi~~~~~~~~~~~ 332 (340)
T PLN02653 310 GWKPKVGFEQLVKMMVDEDLELA 332 (340)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhc
Confidence 999 8899999999999998643
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=292.01 Aligned_cols=299 Identities=28% Similarity=0.398 Sum_probs=229.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|+||||+||||+++++.|+++|++|++++|+++....+ ...+++++.+|++|++++.++++++|+|||+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL--------EGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc--------ccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 4799999999999999999999999999999976553221 12368899999999999999999999999999
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhh
Q 020266 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (328)
Q Consensus 90 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 169 (328)
+....... .....+++|+.++.++++++++. +++++|++||.++ |+.. ....+++|+.+..+. ...+.|+.
T Consensus 73 ~~~~~~~~-~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~-~~~~---~~~~~~~e~~~~~~~---~~~~~Y~~ 143 (328)
T TIGR03466 73 ADYRLWAP-DPEEMYAANVEGTRNLLRAALEA-GVERVVYTSSVAT-LGVR---GDGTPADETTPSSLD---DMIGHYKR 143 (328)
T ss_pred eecccCCC-CHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEechhh-cCcC---CCCCCcCccCCCCcc---cccChHHH
Confidence 86543322 34578899999999999999987 7889999999764 4321 123467787665542 12346999
Q ss_pred hhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCCCCCCccceeHHHHHHHHHHhhcCCC
Q 020266 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 170 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
+|.++|.+++.++.+++++++++||+.+|||+..... .....+.....+. +...+...+|+|++|+|+++..+++++.
T Consensus 144 sK~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~ 222 (328)
T TIGR03466 144 SKFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPT-PTGRIIVDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERGR 222 (328)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCC-cHHHHHHHHHcCCCceeeCCCcceEEHHHHHHHHHHHHhCCC
Confidence 9999999999998888999999999999999754321 1223444444444 4444556799999999999999998764
Q ss_pred CCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCC------------------CCCCC---------CCceecchHHH-H
Q 020266 249 ANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCA------------------DDKPH---------VPTYQVLKEKV-K 300 (328)
Q Consensus 249 ~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~------------------~~~~~---------~~~~~~~~~k~-~ 300 (328)
.+..|+++++.++++|+++.+.+.+|........+ ...+. .....+|++|+ +
T Consensus 223 ~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 302 (328)
T TIGR03466 223 IGERYILGGENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVR 302 (328)
T ss_pred CCceEEecCCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCChHHHHH
Confidence 44478887889999999999999988431111110 00111 12456899999 9
Q ss_pred hcCCccccHHHHHHHHHHHHHHcCCC
Q 020266 301 NLGIEFIPVEVSLKETIESLKEKGFV 326 (328)
Q Consensus 301 ~lg~~~~~~~~~l~~~~~~~~~~~~~ 326 (328)
.|||++++++++++++++||+++|.+
T Consensus 303 ~lg~~p~~~~~~i~~~~~~~~~~~~~ 328 (328)
T TIGR03466 303 ELGYRQRPAREALRDAVEWFRANGYL 328 (328)
T ss_pred HcCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 99999669999999999999998764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=296.97 Aligned_cols=299 Identities=27% Similarity=0.447 Sum_probs=216.9
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhcc--C-CCCcEEEEEccCCCcCchHHhhC
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD--G-ASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~-~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
...+++|+||||||+||||++++++|+++|++|+++.|+.+....+..+.... . ...++.++.+|++|++++.++++
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 45677899999999999999999999999999999888765443332221100 0 01358889999999999999999
Q ss_pred CccEEEEccCCCCCCC-CCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh-hhccCCCCCCCCccccCCCCCCcc
Q 020266 81 GCDGVCHTASPFYHDA-KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA-AVLNTGKPRTPDVVVDETWFSDPE 158 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~-~~~~~~~~~~~~~~~~E~~~~~~~ 158 (328)
++|+|||+|+...... ........++|+.++.+++++|++..++++|||+||.+ .+|+...+......++|+.+....
T Consensus 128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~ 207 (367)
T PLN02686 128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDES 207 (367)
T ss_pred hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChh
Confidence 9999999998753321 11112556789999999999998754688999999964 355431111111346676544332
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCCCCCCccceeHHHHH
Q 020266 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVA 237 (328)
Q Consensus 159 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~D~a 237 (328)
.+..+.++|+.||.++|.+++.++++++++++++||++||||++..... ..+.+.+.+. +.+++..++|+||+|+|
T Consensus 208 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~---~~~~~~~~g~~~~~g~g~~~~v~V~Dva 284 (367)
T PLN02686 208 FCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNS---TATIAYLKGAQEMLADGLLATADVERLA 284 (367)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCC---hhHHHHhcCCCccCCCCCcCeEEHHHHH
Confidence 2233456799999999999999988889999999999999997543211 1223444454 45566677899999999
Q ss_pred HHHHHhhcCC---CCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCceecchHHH-HhcCCc
Q 020266 238 NAHIQAFEVP---SANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADD-KPHVPTYQVLKEKV-KNLGIE 305 (328)
Q Consensus 238 ~~~~~~~~~~---~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~-~~lg~~ 305 (328)
++++.+++.. ..+++|++++..++++|+++.+.+.++........... ......+.+|++|+ +.+||+
T Consensus 285 ~A~~~al~~~~~~~~~~~yi~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~d~~kl~~~l~~~ 357 (367)
T PLN02686 285 EAHVCVYEAMGNKTAFGRYICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFELSNKKLSRLMSRT 357 (367)
T ss_pred HHHHHHHhccCCCCCCCcEEEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccccHHHHHHHHHHh
Confidence 9999999852 23458866778999999999999999743111122222 34566788999999 899998
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=271.37 Aligned_cols=297 Identities=20% Similarity=0.268 Sum_probs=235.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh-hhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-TRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.+++|+||||.||||+|||+.|..+||+|++++.-...-+. +.... ..+.++.+.-|++.+ ++..+|-|+
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~----~~~~fel~~hdv~~p-----l~~evD~Iy 96 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWI----GHPNFELIRHDVVEP-----LLKEVDQIY 96 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhc----cCcceeEEEeechhH-----HHHHhhhhh
Confidence 36899999999999999999999999999999974433222 22211 245788888888766 677899999
Q ss_pred EccCCCCC--CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 87 HTASPFYH--DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 87 h~a~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
|+|++.+. ...++ ...+.+|+.|+.+++-.|++. + +||++.||+ .+||++ ...|..|+.+... .+..+.
T Consensus 97 hLAapasp~~y~~np-vktIktN~igtln~lglakrv-~-aR~l~aSTs-eVYgdp----~~hpq~e~ywg~v-npigpr 167 (350)
T KOG1429|consen 97 HLAAPASPPHYKYNP-VKTIKTNVIGTLNMLGLAKRV-G-ARFLLASTS-EVYGDP----LVHPQVETYWGNV-NPIGPR 167 (350)
T ss_pred hhccCCCCcccccCc-cceeeecchhhHHHHHHHHHh-C-ceEEEeecc-cccCCc----ccCCCcccccccc-CcCCch
Confidence 99998443 33444 488999999999999999997 5 689999995 677653 3344455443332 123356
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcc-hHHHHHHHHhCCC--CC--CCCCccceeHHHHHHH
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNT-SAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANA 239 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~~ 239 (328)
+.|...|+++|.++..|.+++|+.+.|.|+.+.|||...-...+ +..++.+.+.+.+ .+ |.|.|+|++++|++++
T Consensus 168 ~cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Veg 247 (350)
T KOG1429|consen 168 SCYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEG 247 (350)
T ss_pred hhhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHH
Confidence 77999999999999999999999999999999999976544444 4556667777775 34 5789999999999999
Q ss_pred HHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHHHHHH
Q 020266 240 HIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKET 316 (328)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~ 316 (328)
++++++++ ..+-+|+++ +.+|+.|+++++.+..+....+......+........|++|+ +.|||. ..+++|+|..+
T Consensus 248 ll~Lm~s~-~~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~LgW~Pkv~L~egL~~t 326 (350)
T KOG1429|consen 248 LLRLMESD-YRGPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQLGWEPKVSLREGLPLT 326 (350)
T ss_pred HHHHhcCC-CcCCcccCCccceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHHhCCCCCCcHHHhhHHH
Confidence 99999986 445688875 899999999999999976656666666566667788999999 999999 99999999999
Q ss_pred HHHHHHc
Q 020266 317 IESLKEK 323 (328)
Q Consensus 317 ~~~~~~~ 323 (328)
+.|++.+
T Consensus 327 ~~~fr~~ 333 (350)
T KOG1429|consen 327 VTYFRER 333 (350)
T ss_pred HHHHHHH
Confidence 9998753
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=286.59 Aligned_cols=289 Identities=33% Similarity=0.541 Sum_probs=214.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
.+|+|||||||||||++++++|+++||+|+++.|+.........+........+++++.+|++|.+.+.+++.++|.|+|
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~ 84 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFC 84 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 36789999999999999999999999999999986433221111111111124688999999999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
+++....... .+...+++|+.|+.+++++|.+..++++||++||.++++..+.......+++|+++..+.+......+|
T Consensus 85 ~~~~~~~~~~-~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 163 (297)
T PLN02583 85 CFDPPSDYPS-YDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWH 163 (297)
T ss_pred eCccCCcccc-cHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccHH
Confidence 8865433222 234789999999999999998864578999999987653111111123467888765544333333479
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
+.||..+|++++.++++.++++++|||+.||||...... ..+.+. +.++...++|||++|+|+++++++++
T Consensus 164 ~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~--------~~~~~~~~~~~~~~~~~v~V~Dva~a~~~al~~ 235 (297)
T PLN02583 164 ALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN--------PYLKGAAQMYENGVLVTVDVNFLVDAHIRAFED 235 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch--------hhhcCCcccCcccCcceEEHHHHHHHHHHHhcC
Confidence 999999999999998888999999999999999754321 122333 33455567899999999999999998
Q ss_pred CCCCCcEEEecCccC-HHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCc
Q 020266 247 PSANGRYCLVERVSH-YSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE 305 (328)
Q Consensus 247 ~~~~g~~~~~~~~~~-~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~ 305 (328)
+...|+|+++++..+ ..++++++.+.+|..+.+.......+......++++|+++||++
T Consensus 236 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 295 (297)
T PLN02583 236 VSSYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYEMQGSEVYQQRIRNKKLNKLMED 295 (297)
T ss_pred cccCCcEEEecCCCccHHHHHHHHHHhCCCCCCCCcccccCCCccccccChHHHHHhCcc
Confidence 877789999987655 57899999999997766643222123334567899999999986
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=289.27 Aligned_cols=283 Identities=19% Similarity=0.193 Sum_probs=203.3
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcC---c-hHHhhC-----Cc
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG---S-FDSIVD-----GC 82 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~-~~~~~~-----~~ 82 (328)
|||||||||||++|+++|+++|++|+++.|+....... ..+..+|+.|.. + +..+++ ++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 69 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF------------VNLVDLDIADYMDKEDFLAQIMAGDDFGDI 69 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH------------HhhhhhhhhhhhhHHHHHHHHhcccccCCc
Confidence 89999999999999999999999877776654332110 011234555443 2 233332 68
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 162 (328)
|+|||+||.......++ ...+++|+.++.+|+++|++. ++ +|||+||.+ +|+.. ...+.+|+.+..|.
T Consensus 70 d~Vih~A~~~~~~~~~~-~~~~~~n~~~t~~ll~~~~~~-~~-~~i~~SS~~-vyg~~----~~~~~~E~~~~~p~---- 137 (308)
T PRK11150 70 EAIFHEGACSSTTEWDG-KYMMDNNYQYSKELLHYCLER-EI-PFLYASSAA-TYGGR----TDDFIEEREYEKPL---- 137 (308)
T ss_pred cEEEECceecCCcCCCh-HHHHHHHHHHHHHHHHHHHHc-CC-cEEEEcchH-HhCcC----CCCCCccCCCCCCC----
Confidence 99999998644332233 357899999999999999997 66 699999975 55432 12346676665553
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cch-HHHHHHHHhCCC--CC-C--CCCccceeHH
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTS-AAAVLSLIKGAQ--TY-P--NVTFGWVNVK 234 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~-~~~~~~~~~~~~--~~-~--~~~~~~v~v~ 234 (328)
+.|+.+|.++|++++.++..++++++++||+++|||+..... ... ..+..++..+.+ ++ + +..++|+|++
T Consensus 138 --~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~ 215 (308)
T PRK11150 138 --NVYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVG 215 (308)
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHH
Confidence 669999999999999998888999999999999999864321 112 233355666653 22 3 4578999999
Q ss_pred HHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCC---CCCCCceecchHHHHhcCCc-c-cc
Q 020266 235 DVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADD---KPHVPTYQVLKEKVKNLGIE-F-IP 308 (328)
Q Consensus 235 D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~~~lg~~-~-~~ 308 (328)
|+|++++.+++.. .+++||+++ ..+|+.|+++.+.+.++...+.....+. ........+|++|++++||+ + ++
T Consensus 216 D~a~a~~~~~~~~-~~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~g~~p~~~~ 294 (308)
T PRK11150 216 DVAAVNLWFWENG-VSGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDKLKGRYQAFTQADLTKLRAAGYDKPFKT 294 (308)
T ss_pred HHHHHHHHHHhcC-CCCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccccccccceecccCHHHHHhcCCCCCCCC
Confidence 9999999998864 357999975 7899999999999998742222111111 11122346899999668998 4 59
Q ss_pred HHHHHHHHHHHHH
Q 020266 309 VEVSLKETIESLK 321 (328)
Q Consensus 309 ~~~~l~~~~~~~~ 321 (328)
++++|+++++|+.
T Consensus 295 ~~~gl~~~~~~~~ 307 (308)
T PRK11150 295 VAEGVAEYMAWLN 307 (308)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999975
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=286.77 Aligned_cols=299 Identities=18% Similarity=0.202 Sum_probs=225.6
Q ss_pred eEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCC--hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--ccE
Q 020266 11 VVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDG 84 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~ 84 (328)
+|||||||||||++++++|+++| ++|++++|.... ...+... ...++++++.+|++|++++.+++++ +|+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 76 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADL----EDNPRYRFVKGDIGDRELVSRLFTEHQPDA 76 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhh----ccCCCcEEEEcCCcCHHHHHHHHhhcCCCE
Confidence 59999999999999999999987 789888774321 1111111 1124688899999999999999986 899
Q ss_pred EEEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 85 VCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 85 vih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
|||+|+.... .........+++|+.++.+++++|.+.....++|++||.+ +||... ...+.+|+.+..|.
T Consensus 77 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~-v~g~~~---~~~~~~e~~~~~~~----- 147 (317)
T TIGR01181 77 VVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDE-VYGDLE---KGDAFTETTPLAPS----- 147 (317)
T ss_pred EEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccc-eeCCCC---CCCCcCCCCCCCCC-----
Confidence 9999987432 1222344778999999999999998862233899999976 454321 12256777665543
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CCCCccceeHHHHHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANA 239 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~~ 239 (328)
+.|+.+|..+|.+++.++.+.+++++++||+.+|||..... ..+..++.++..+.+ .+ +++.++|+|++|++++
T Consensus 148 -~~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~ 225 (317)
T TIGR01181 148 -SPYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPE-KLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRA 225 (317)
T ss_pred -CchHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcc-cHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHH
Confidence 56999999999999999888899999999999999975432 335556667766653 22 4568899999999999
Q ss_pred HHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCC-CCCCCCCCCCceecchHHH-HhcCCc-cccHHHHHHH
Q 020266 240 HIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPE-KCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKE 315 (328)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~ 315 (328)
+..++++...+++||+++ +.++++|+++.+.+.++...... ...........+.+|++|+ +.+||+ .+++++++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~~ 305 (317)
T TIGR01181 226 IYLVLEKGRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFEEGLRK 305 (317)
T ss_pred HHHHHcCCCCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHHHHHHH
Confidence 999998765556999976 78999999999999998532111 1111122233456899999 889999 7899999999
Q ss_pred HHHHHHHcC
Q 020266 316 TIESLKEKG 324 (328)
Q Consensus 316 ~~~~~~~~~ 324 (328)
+++||+++.
T Consensus 306 ~~~~~~~~~ 314 (317)
T TIGR01181 306 TVQWYLDNE 314 (317)
T ss_pred HHHHHHhcc
Confidence 999998765
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=286.98 Aligned_cols=299 Identities=19% Similarity=0.200 Sum_probs=220.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh-hhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-TRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 86 (328)
|+|||||||||||++++++|+++|++|++++|....... +.... .. ...++.++.+|++|++.+.++++ ++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIE-RL-GGKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHH-Hh-cCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 479999999999999999999999999999875332221 11111 11 12357788999999999888886 689999
Q ss_pred EccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCC-CccccccCC
Q 020266 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS-DPEVCKQSE 164 (328)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~-~~~~~~~~~ 164 (328)
|+|+..... ........+++|+.++.+++++|++. ++++||++||++ +|+.. ...+++|+++. .| .
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~-~yg~~----~~~~~~E~~~~~~p------~ 146 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNLIFSSSAT-VYGDQ----PKIPYVESFPTGTP------Q 146 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHH-hhCCC----CCCccccccCCCCC------C
Confidence 999864321 11223477899999999999999998 788999999975 55422 23567888765 33 3
Q ss_pred chhhhhhHHHHHHHHHHHHhc-CccEEEEcCCcccCCCCCCC--------CcchHHHHHHHHhCC-C---C--------C
Q 020266 165 LWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPT--------LNTSAAAVLSLIKGA-Q---T--------Y 223 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~-~---~--------~ 223 (328)
+.|+.+|.++|.+++.+++.+ +++++++|++++|||..... ...+..++.++..+. + . -
T Consensus 147 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (338)
T PRK10675 147 SPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED 226 (338)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCC
Confidence 669999999999999997664 79999999999999742111 112334555555543 1 1 1
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC--CCC-CcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCceecchHH
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP--SAN-GRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC-ADDKPHVPTYQVLKEK 298 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~--~~~-g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k 298 (328)
+.+.++|+|++|+|++++.+++.. ... ++||+++ +.+|++|+++.+.+.++.. .+... +..........+|++|
T Consensus 227 g~~~~~~v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~k 305 (338)
T PRK10675 227 GTGVRDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKP-VNYHFAPRREGDLPAYWADASK 305 (338)
T ss_pred CcEEEeeEEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCC-CCeeeCCCCCCchhhhhcCHHH
Confidence 356789999999999999998752 223 4899985 7899999999999998853 22221 2222223455689999
Q ss_pred H-HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 299 V-KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 299 ~-~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
+ +.+||+ ..+++++++++++|++.+
T Consensus 306 ~~~~lg~~p~~~~~~~~~~~~~~~~~~ 332 (338)
T PRK10675 306 ADRELNWRVTRTLDEMAQDTWHWQSRH 332 (338)
T ss_pred HHHHhCCCCcCcHHHHHHHHHHHHHhh
Confidence 9 889999 999999999999999875
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=283.84 Aligned_cols=293 Identities=27% Similarity=0.310 Sum_probs=230.2
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc-cEEEEcc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC-DGVCHTA 89 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-d~vih~a 89 (328)
+|||||||||||++|++.|+++||+|++++|...+..... ..++++.+|+++.+...+..+.+ |+|||+|
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a 72 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL---------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLA 72 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc---------cccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence 4999999999999999999999999999999876654321 36789999999998888888888 9999999
Q ss_pred CCCCCCCCC--cchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCC-CCCCccccccCCch
Q 020266 90 SPFYHDAKD--PQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDET-WFSDPEVCKQSELW 166 (328)
Q Consensus 90 ~~~~~~~~~--~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~-~~~~~~~~~~~~~~ 166 (328)
+........ ++...+++|+.++.+++++|++. ++++|||.||.+.+++. ....+++|+ .+..|. +.
T Consensus 73 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~-~~~~~v~~ss~~~~~~~----~~~~~~~E~~~~~~p~------~~ 141 (314)
T COG0451 73 AQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAA-GVKRFVFASSVSVVYGD----PPPLPIDEDLGPPRPL------NP 141 (314)
T ss_pred ccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCCCceECCC----CCCCCcccccCCCCCC------CH
Confidence 985543222 23358899999999999999996 88999997776555532 233377887 454443 47
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCc--chHHHHHHHHhCCCC--C---CCCCccceeHHHHHHH
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQT--Y---PNVTFGWVNVKDVANA 239 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~--~---~~~~~~~v~v~D~a~~ 239 (328)
|+.+|.++|..++.+...++++++++||+++|||+...... ....++.+...+.+. . +...++|+|++|++++
T Consensus 142 Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 221 (314)
T COG0451 142 YGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADA 221 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHH
Confidence 99999999999999998889999999999999998765432 233345556666641 2 2556799999999999
Q ss_pred HHHhhcCCCCCCcEEEec-C-ccCHHHHHHHHHHhCCCCCCC-CCCC--CCCCCCCceecchHHH-HhcCCc-cccHHHH
Q 020266 240 HIQAFEVPSANGRYCLVE-R-VSHYSEIVNIIRELYPAFQLP-EKCA--DDKPHVPTYQVLKEKV-KNLGIE-FIPVEVS 312 (328)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~-~-~~~~~el~~~i~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~ 312 (328)
++.+++++... .||+++ . ..+++|+++.+.+.++..... .... ..........+|.+|+ +.|||. ..+++++
T Consensus 222 ~~~~~~~~~~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~ 300 (314)
T COG0451 222 LLLALENPDGG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEG 300 (314)
T ss_pred HHHHHhCCCCc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCCCCCCHHHH
Confidence 99999987655 999987 4 799999999999998854221 1111 2233445667899999 899999 7899999
Q ss_pred HHHHHHHHHHcC
Q 020266 313 LKETIESLKEKG 324 (328)
Q Consensus 313 l~~~~~~~~~~~ 324 (328)
+.++++|+....
T Consensus 301 i~~~~~~~~~~~ 312 (314)
T COG0451 301 LADTLEWLLKKL 312 (314)
T ss_pred HHHHHHHHHHhh
Confidence 999999997654
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=284.38 Aligned_cols=282 Identities=15% Similarity=0.154 Sum_probs=209.9
Q ss_pred EEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEEEccC
Q 020266 13 CVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCHTAS 90 (328)
Q Consensus 13 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~a~ 90 (328)
||||||||||++|+++|+++|++|+++.+. ..+|+++.+++.++++ ++|+|||+|+
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~----------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A~ 58 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH----------------------KELDLTRQADVEAFFAKEKPTYVILAAA 58 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc----------------------ccCCCCCHHHHHHHHhccCCCEEEEeee
Confidence 699999999999999999999988765432 1379999999998877 5799999998
Q ss_pred CCCC--CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC-chh
Q 020266 91 PFYH--DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE-LWY 167 (328)
Q Consensus 91 ~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~-~~Y 167 (328)
.... .........++.|+.++.+|+++|++. ++++|||+||.+ +|+.. ...+++|+++.... ..+. ..|
T Consensus 59 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~SS~~-vyg~~----~~~~~~E~~~~~~~--~~p~~~~Y 130 (306)
T PLN02725 59 KVGGIHANMTYPADFIRENLQIQTNVIDAAYRH-GVKKLLFLGSSC-IYPKF----APQPIPETALLTGP--PEPTNEWY 130 (306)
T ss_pred eecccchhhhCcHHHHHHHhHHHHHHHHHHHHc-CCCeEEEeCcee-ecCCC----CCCCCCHHHhccCC--CCCCcchH
Confidence 7432 122233477899999999999999998 788999999976 56432 24567887643210 1122 359
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC---CcchHHHHHH----HHhCCC--C-C--CCCCccceeHHH
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---LNTSAAAVLS----LIKGAQ--T-Y--PNVTFGWVNVKD 235 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~----~~~~~~--~-~--~~~~~~~v~v~D 235 (328)
+.+|.++|.+++.+++.++++++++||+.+|||+.... ...+..++.. ...+.+ . + +.+.++|+|++|
T Consensus 131 ~~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D 210 (306)
T PLN02725 131 AIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDD 210 (306)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHH
Confidence 99999999999999888899999999999999975311 1122233332 234443 2 2 467789999999
Q ss_pred HHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCc-cccHHHHH
Q 020266 236 VANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE-FIPVEVSL 313 (328)
Q Consensus 236 ~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~-~~~~~~~l 313 (328)
++++++.++++....+.||+++ ..+|+.|+++.+++.++...................+|++|++++||+ .+++++++
T Consensus 211 v~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~~l 290 (306)
T PLN02725 211 LADAVVFLMRRYSGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLRSLGWDPKFSLKDGL 290 (306)
T ss_pred HHHHHHHHHhccccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHHHHHHhCCCCCCCHHHHH
Confidence 9999999998754556889975 789999999999999874211111111111223456899999779999 78999999
Q ss_pred HHHHHHHHHcC
Q 020266 314 KETIESLKEKG 324 (328)
Q Consensus 314 ~~~~~~~~~~~ 324 (328)
+++++|++++.
T Consensus 291 ~~~~~~~~~~~ 301 (306)
T PLN02725 291 QETYKWYLENY 301 (306)
T ss_pred HHHHHHHHhhh
Confidence 99999998764
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=281.29 Aligned_cols=272 Identities=15% Similarity=0.078 Sum_probs=203.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 87 (328)
|+||||||+||||++|+++|+++| +|++++|... .+.+|++|++.+.++++ ++|+|||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-------------------~~~~Dl~d~~~~~~~~~~~~~D~Vih 60 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST-------------------DYCGDFSNPEGVAETVRKIRPDVIVN 60 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-------------------cccCCCCCHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999999 7988887521 24589999999998887 5899999
Q ss_pred ccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
||+..... ........+++|+.++.+|+++|++. +. +|||+||.++ |+. ....+++|++++.|. +.
T Consensus 61 ~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g~-~~v~~Ss~~V-y~~----~~~~p~~E~~~~~P~------~~ 127 (299)
T PRK09987 61 AAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-GA-WVVHYSTDYV-FPG----TGDIPWQETDATAPL------NV 127 (299)
T ss_pred CCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEccceE-ECC----CCCCCcCCCCCCCCC------CH
Confidence 99975432 22233466789999999999999998 65 7999999764 532 123578898877764 67
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCC----CCCccceeHHHHHHHH
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYP----NVTFGWVNVKDVANAH 240 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~v~v~D~a~~~ 240 (328)
|+.+|..+|.++..++ .+.+++||+++|||+.. +++..++..+..+++ .++ .+.+.+.++||+++++
T Consensus 128 Yg~sK~~~E~~~~~~~----~~~~ilR~~~vyGp~~~---~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~ 200 (299)
T PRK09987 128 YGETKLAGEKALQEHC----AKHLIFRTSWVYAGKGN---NFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAI 200 (299)
T ss_pred HHHHHHHHHHHHHHhC----CCEEEEecceecCCCCC---CHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHH
Confidence 9999999999997764 46799999999999743 334445555555553 333 3445666788889988
Q ss_pred HHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCC--CCC------CC---CCCCCCCCCceecchHHH-HhcCCccc
Q 020266 241 IQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF--QLP------EK---CADDKPHVPTYQVLKEKV-KNLGIEFI 307 (328)
Q Consensus 241 ~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~--~~~------~~---~~~~~~~~~~~~~~~~k~-~~lg~~~~ 307 (328)
..++..+...|+||+++ +.+|+.|+++.+.+.++.. ..+ .. .+..........+|++|+ +.+||+++
T Consensus 201 ~~~~~~~~~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~ 280 (299)
T PRK09987 201 RVALNKPEVAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLP 280 (299)
T ss_pred HHhhccCCCCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCc
Confidence 88877654457999986 8899999999997754321 111 00 011122334557899999 77999977
Q ss_pred cHHHHHHHHHHHHH
Q 020266 308 PVEVSLKETIESLK 321 (328)
Q Consensus 308 ~~~~~l~~~~~~~~ 321 (328)
+++++|+++++.+.
T Consensus 281 ~~~~~l~~~~~~~~ 294 (299)
T PRK09987 281 DWQVGVKRMLTELF 294 (299)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999998764
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=268.41 Aligned_cols=303 Identities=23% Similarity=0.278 Sum_probs=241.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 85 (328)
.++||||||+||||+|.+-+|+++|+.|.+++. +..-...+.+.........++.++.+|++|.+.++++++ .+|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 578999999999999999999999999999997 444455555555454446789999999999999999998 68999
Q ss_pred EEccCC--CCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCC-cccccc
Q 020266 86 CHTASP--FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD-PEVCKQ 162 (328)
Q Consensus 86 ih~a~~--~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~-~~~~~~ 162 (328)
+|.|+. +.....++. .++..|+.|+.+|++.++++ +++.+|+.||+ .+||.+ ...|++|+++.. |
T Consensus 82 ~Hfa~~~~vgeS~~~p~-~Y~~nNi~gtlnlLe~~~~~-~~~~~V~sssa-tvYG~p----~~ip~te~~~t~~p----- 149 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPL-SYYHNNIAGTLNLLEVMKAH-NVKALVFSSSA-TVYGLP----TKVPITEEDPTDQP----- 149 (343)
T ss_pred EeehhhhccchhhhCch-hheehhhhhHHHHHHHHHHc-CCceEEEecce-eeecCc----ceeeccCcCCCCCC-----
Confidence 999987 344445554 88999999999999999999 68999999996 577654 458999998877 4
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccC--CC----CCCCC--cchHHHHHHHHhCC-C-----------C
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIG--PL----LQPTL--NTSAAAVLSLIKGA-Q-----------T 222 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G--~~----~~~~~--~~~~~~~~~~~~~~-~-----------~ 222 (328)
.++|+.+|...|++...+...++..++.||.++++| |. +.+.. +.+...+.+...++ + .
T Consensus 150 -~~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~ 228 (343)
T KOG1371|consen 150 -TNPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTI 228 (343)
T ss_pred -CCcchhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCccccc
Confidence 377999999999999999998889999999999999 42 12211 11222333333333 1 1
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCC---CCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCceecchH
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVPSA---NGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC-ADDKPHVPTYQVLKE 297 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~~~---~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 297 (328)
.|+..++++|+-|+|+..+.++..... .++||++. ...++.+++..+++++|.. ++... ..+.......+.+++
T Consensus 229 dgt~vrdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~-~k~~~v~~R~gdv~~~ya~~~ 307 (343)
T KOG1371|consen 229 DGTIVRDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVK-IKKKVVPRRNGDVAFVYANPS 307 (343)
T ss_pred CCCeeecceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCC-CCccccCCCCCCceeeeeChH
Confidence 147889999999999999999987544 34899874 7888999999999999843 33322 224566678889999
Q ss_pred HH-HhcCCc-cccHHHHHHHHHHHHHHcCC
Q 020266 298 KV-KNLGIE-FIPVEVSLKETIESLKEKGF 325 (328)
Q Consensus 298 k~-~~lg~~-~~~~~~~l~~~~~~~~~~~~ 325 (328)
++ ++|||+ .++++++++++++|+.++..
T Consensus 308 ~a~~elgwk~~~~iee~c~dlw~W~~~np~ 337 (343)
T KOG1371|consen 308 KAQRELGWKAKYGLQEMLKDLWRWQKQNPS 337 (343)
T ss_pred HHHHHhCCccccCHHHHHHHHHHHHhcCCC
Confidence 99 999999 89999999999999988754
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=271.48 Aligned_cols=250 Identities=28% Similarity=0.354 Sum_probs=188.4
Q ss_pred EEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEccC
Q 020266 13 CVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTAS 90 (328)
Q Consensus 13 lVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a~ 90 (328)
|||||+||||++|+++|+++| ++|+++++.+...... ... ..+..+++++|++|++++.++++++|+|||+|+
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~-~~~----~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa 75 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLK-DLQ----KSGVKEYIQGDITDPESLEEALEGVDVVFHTAA 75 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccch-hhh----cccceeEEEeccccHHHHHHHhcCCceEEEeCc
Confidence 699999999999999999999 7899999866543210 010 112334999999999999999999999999999
Q ss_pred CCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhh
Q 020266 91 PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLS 170 (328)
Q Consensus 91 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 170 (328)
+.......+.+..+++|+.||++|+++|++. ++++|||+||.+++.... ....-...+|+.+..+. +.+.|+.|
T Consensus 76 ~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~-~VkrlVytSS~~vv~~~~-~~~~~~~~dE~~~~~~~----~~~~Y~~S 149 (280)
T PF01073_consen 76 PVPPWGDYPPEEYYKVNVDGTRNVLEAARKA-GVKRLVYTSSISVVFDNY-KGDPIINGDEDTPYPSS----PLDPYAES 149 (280)
T ss_pred cccccCcccHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcCcceeEecc-CCCCcccCCcCCccccc----ccCchHHH
Confidence 8665544556689999999999999999998 999999999987665311 11111223566544332 45779999
Q ss_pred hHHHHHHHHHHHH---hc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC--CCC--CCCCccceeHHHHHHHHH
Q 020266 171 KTLAEDAAWKFAK---EK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTFGWVNVKDVANAHI 241 (328)
Q Consensus 171 K~~~E~~~~~~~~---~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~v~v~D~a~~~~ 241 (328)
|..||.+++++.. +. .+.+++|||+.||||++......+ ......|. ... +....+++|++|+|.+.+
T Consensus 150 K~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~---~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahv 226 (280)
T PF01073_consen 150 KALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRL---VKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHV 226 (280)
T ss_pred HHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccchh---hHHHHhcccceeecCCCceECcEeHHHHHHHHH
Confidence 9999999999865 22 489999999999999875543222 22233332 112 356789999999999999
Q ss_pred HhhcC---C----CCCC-cEEEec-CccC-HHHHHHHHHHhCCCC
Q 020266 242 QAFEV---P----SANG-RYCLVE-RVSH-YSEIVNIIRELYPAF 276 (328)
Q Consensus 242 ~~~~~---~----~~~g-~~~~~~-~~~~-~~el~~~i~~~~~~~ 276 (328)
+|.++ + ...| .|++++ +++. ++|+.+.+.+.+|..
T Consensus 227 lA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~ 271 (280)
T PF01073_consen 227 LAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYP 271 (280)
T ss_pred HHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCC
Confidence 88652 2 2345 899986 7888 999999999999853
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=272.20 Aligned_cols=286 Identities=18% Similarity=0.155 Sum_probs=209.8
Q ss_pred EEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----CccEEE
Q 020266 12 VCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDGVC 86 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~vi 86 (328)
|||||||||||+++++.|.++|+ +|++++|..... .+... ....+.+|+++.+.++.+.+ ++|+||
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~~~--------~~~~~~~d~~~~~~~~~~~~~~~~~~D~vv 71 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KFLNL--------ADLVIADYIDKEDFLDRLEKGAFGKIEAIF 71 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hhhhh--------hheeeeccCcchhHHHHHHhhccCCCCEEE
Confidence 69999999999999999999997 788887754322 11111 11346688888877777654 799999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
|+|+....... .....+++|+.++.+++++|++. ++ +|||+||++ +|+.. ..+++|++++. .+.+.
T Consensus 72 h~A~~~~~~~~-~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~-vy~~~-----~~~~~e~~~~~-----~p~~~ 137 (314)
T TIGR02197 72 HQGACSDTTET-DGEYMMENNYQYSKRLLDWCAEK-GI-PFIYASSAA-TYGDG-----EAGFREGRELE-----RPLNV 137 (314)
T ss_pred ECccccCcccc-chHHHHHHHHHHHHHHHHHHHHh-CC-cEEEEccHH-hcCCC-----CCCcccccCcC-----CCCCH
Confidence 99997543333 34578899999999999999987 65 799999975 56432 23455554322 12467
Q ss_pred hhhhhHHHHHHHHHHHHh--cCccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCCCC----------CCCCCccce
Q 020266 167 YPLSKTLAEDAAWKFAKE--KSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQT----------YPNVTFGWV 231 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~--~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~----------~~~~~~~~v 231 (328)
|+.+|..+|.+++.+... .+++++++||+.+|||+..... ..+..++.++..+.+. -|++.++|+
T Consensus 138 Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 217 (314)
T TIGR02197 138 YGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFV 217 (314)
T ss_pred HHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeE
Confidence 999999999999875432 3579999999999999754321 2244556666666521 135678999
Q ss_pred eHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC-CCCC-CCCC--CCCCCceecchHHH-HhcCCc
Q 020266 232 NVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ-LPEK-CADD--KPHVPTYQVLKEKV-KNLGIE 305 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~-~~~~-~~~~--~~~~~~~~~~~~k~-~~lg~~ 305 (328)
|++|+++++..++.+ ..+++||+++ +++|++|+++.+.+.++... +... .+.. ........+|++|+ +.+||+
T Consensus 218 ~v~D~a~~i~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ 296 (314)
T TIGR02197 218 YVKDVVDVNLWLLEN-GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAGYYG 296 (314)
T ss_pred EHHHHHHHHHHHHhc-ccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhcCCC
Confidence 999999999999987 4567999986 79999999999999988432 1111 1111 11123456899999 888998
Q ss_pred -cccHHHHHHHHHHHHH
Q 020266 306 -FIPVEVSLKETIESLK 321 (328)
Q Consensus 306 -~~~~~~~l~~~~~~~~ 321 (328)
.++++++++++++|+.
T Consensus 297 p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 297 PFTTLEEGVKDYVQWLL 313 (314)
T ss_pred CcccHHHHHHHHHHHHh
Confidence 9999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=266.19 Aligned_cols=267 Identities=19% Similarity=0.135 Sum_probs=206.2
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--ccEEEEc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGVCHT 88 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vih~ 88 (328)
+|||||||||||++++++|+++|++|+++.|+ .+|+.+++.+.+++++ +|+|||+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~-----------------------~~d~~~~~~~~~~~~~~~~d~vi~~ 57 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS-----------------------QLDLTDPEALERLLRAIRPDAVVNT 57 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-----------------------ccCCCCHHHHHHHHHhCCCCEEEEC
Confidence 58999999999999999999999999999885 2689999999988885 4999999
Q ss_pred cCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 89 ASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 89 a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
|+..... ........+++|+.++.+++++|++. +. +||++||.+ +|+.. ...+++|+++..|. +.|
T Consensus 58 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~Ss~~-vy~~~----~~~~~~E~~~~~~~------~~Y 124 (287)
T TIGR01214 58 AAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-GA-RLVHISTDY-VFDGE----GKRPYREDDATNPL------NVY 124 (287)
T ss_pred CccccccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeee-eecCC----CCCCCCCCCCCCCc------chh
Confidence 9874322 12223467899999999999999987 54 899999975 45321 33567888776553 669
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHhhc
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQAFE 245 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~v~D~a~~~~~~~~ 245 (328)
+.+|..+|.+++.+ +.+++++||+.+|||+... .+...++..+..+.+ ..+++.++++|++|+|+++..++.
T Consensus 125 ~~~K~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~ 198 (287)
T TIGR01214 125 GQSKLAGEQAIRAA----GPNALIVRTSWLYGGGGGR--NFVRTMLRLAGRGEELRVVDDQIGSPTYAKDLARVIAALLQ 198 (287)
T ss_pred hHHHHHHHHHHHHh----CCCeEEEEeeecccCCCCC--CHHHHHHHHhhcCCCceEecCCCcCCcCHHHHHHHHHHHHh
Confidence 99999999999765 6799999999999997432 233344555555553 346778899999999999999998
Q ss_pred CC-CCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC-----------CCCCCCCCceecchHHH-HhcCCccccHHH
Q 020266 246 VP-SANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC-----------ADDKPHVPTYQVLKEKV-KNLGIEFIPVEV 311 (328)
Q Consensus 246 ~~-~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~k~-~~lg~~~~~~~~ 311 (328)
++ ..+++||+++ +.+|+.|+++.+.+.++........ ...........+|++|+ +.+||+.+++++
T Consensus 199 ~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~~~~~~~~ 278 (287)
T TIGR01214 199 RLARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGTPLPHWRE 278 (287)
T ss_pred hccCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCCCCccHHH
Confidence 76 3467999986 7899999999999999854321100 01111223467899999 779999889999
Q ss_pred HHHHHHHH
Q 020266 312 SLKETIES 319 (328)
Q Consensus 312 ~l~~~~~~ 319 (328)
+++++++.
T Consensus 279 ~l~~~~~~ 286 (287)
T TIGR01214 279 ALRAYLQE 286 (287)
T ss_pred HHHHHHhh
Confidence 99998763
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=267.31 Aligned_cols=297 Identities=20% Similarity=0.220 Sum_probs=215.7
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEEE
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 87 (328)
+|||||||||||+++++.|+++|++|++++|.... ...+.... ...+++++.+|+++++++.++++ ++|+|||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~ 76 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGE----RITRVTFVEGDLRDRELLDRLFEEHKIDAVIH 76 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhc----cccceEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 58999999999999999999999999988764332 22111110 01257888999999999998886 6999999
Q ss_pred ccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
+||..... ........+++|+.++.+++++|.+. +++++|++||.+ +|+.. ...+++|+.+..|. +.
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~ss~~-~~g~~----~~~~~~e~~~~~~~------~~ 144 (328)
T TIGR01179 77 FAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GVKKFIFSSSAA-VYGEP----SSIPISEDSPLGPI------NP 144 (328)
T ss_pred CccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CCCEEEEecchh-hcCCC----CCCCccccCCCCCC------Cc
Confidence 99874321 12223467889999999999999987 778999999975 55422 22357787766543 56
Q ss_pred hhhhhHHHHHHHHHHHHh-cCccEEEEcCCcccCCCCCCC-------CcchHHHHHHHHhCC--C--C--------CCCC
Q 020266 167 YPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQPT-------LNTSAAAVLSLIKGA--Q--T--------YPNV 226 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~--~--~--------~~~~ 226 (328)
|+.+|..+|.+++.++++ .+++++++||+.+|||..... ...+...+.....+. + . .+++
T Consensus 145 y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (328)
T TIGR01179 145 YGRSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTC 224 (328)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCce
Confidence 999999999999999877 799999999999999853221 111222233333321 1 1 1346
Q ss_pred CccceeHHHHHHHHHHhhcCC---CCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-Hh
Q 020266 227 TFGWVNVKDVANAHIQAFEVP---SANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KN 301 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~---~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~ 301 (328)
.++|||++|+++++..++... ..+++||+++ +.+|++|+++.+++.+|.................+..|++|+ +.
T Consensus 225 ~~~~v~~~D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (328)
T TIGR01179 225 VRDYIHVMDLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASKIRRE 304 (328)
T ss_pred EEeeeeHHHHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCccccchhcchHHHHHH
Confidence 689999999999999998752 2345999975 789999999999999985321111111111223456799999 88
Q ss_pred cCCc-ccc-HHHHHHHHHHHHHHc
Q 020266 302 LGIE-FIP-VEVSLKETIESLKEK 323 (328)
Q Consensus 302 lg~~-~~~-~~~~l~~~~~~~~~~ 323 (328)
|||+ .++ ++++++++++|+++|
T Consensus 305 lg~~p~~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 305 LGWQPKYTDLEIIIKTAWRWESRN 328 (328)
T ss_pred hCCCCCcchHHHHHHHHHHHHhcC
Confidence 9999 555 999999999999864
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=270.96 Aligned_cols=271 Identities=14% Similarity=0.156 Sum_probs=203.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+++|+||||||+||||++++++|+++| ++|++++|+......+.... ...++.++.+|++|++.+.++++++|+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l~~~~~~iD~ 77 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKERLTRALRGVDY 77 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHHHHHHHhcCCE
Confidence 357899999999999999999999986 78999998765433322221 124688999999999999999999999
Q ss_pred EEEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 85 VCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 85 vih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
|||+||.... .......+.+++|+.|+.+++++|.+. ++++||++||..... +
T Consensus 78 Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~~~iV~~SS~~~~~-------------------------p 131 (324)
T TIGR03589 78 VVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GVKRVVALSTDKAAN-------------------------P 131 (324)
T ss_pred EEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-------------------------C
Confidence 9999996432 112223478999999999999999997 778999999953211 1
Q ss_pred CchhhhhhHHHHHHHHHHHH---hcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC---CCC-CCCCccceeHHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAK---EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA---QTY-PNVTFGWVNVKDV 236 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~v~v~D~ 236 (328)
.++|+.+|.++|.+++.++. .+|++++++||+++|||+.. .+..+......+. +.. +.+.++|+|++|+
T Consensus 132 ~~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~----~i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~ 207 (324)
T TIGR03589 132 INLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS----VVPFFKSLKEEGVTELPITDPRMTRFWITLEQG 207 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCC----cHHHHHHHHHhCCCCeeeCCCCceEeeEEHHHH
Confidence 24599999999999987643 56899999999999998632 2334444444454 222 4677899999999
Q ss_pred HHHHHHhhcCCCCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCCCC-CCceecchHHH-HhcCCc-cccHHHHH
Q 020266 237 ANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPH-VPTYQVLKEKV-KNLGIE-FIPVEVSL 313 (328)
Q Consensus 237 a~~~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~-~~lg~~-~~~~~~~l 313 (328)
|++++.++++...+.+|+.++..+++.|+++.+.+..+....+. .... .....+|++|+ +.+||+ ++++++++
T Consensus 208 a~a~~~al~~~~~~~~~~~~~~~~sv~el~~~i~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~lg~~~~~~l~~~~ 283 (324)
T TIGR03589 208 VNFVLKSLERMLGGEIFVPKIPSMKITDLAEAMAPECPHKIVGI----RPGEKLHEVMITEDDARHTYELGDYYAILPSI 283 (324)
T ss_pred HHHHHHHHhhCCCCCEEccCCCcEEHHHHHHHHHhhCCeeEeCC----CCCchhHhhhcChhhhhhhcCCCCeEEEcccc
Confidence 99999999874333377655678999999999998754221111 1111 12355799999 889999 99999998
Q ss_pred HH
Q 020266 314 KE 315 (328)
Q Consensus 314 ~~ 315 (328)
+.
T Consensus 284 ~~ 285 (324)
T TIGR03589 284 SF 285 (324)
T ss_pred cc
Confidence 64
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=265.72 Aligned_cols=278 Identities=16% Similarity=0.137 Sum_probs=203.3
Q ss_pred CCCeEEEE----CCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhh----hhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 8 AGKVVCVT----GASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRH----LLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 8 ~~~~vlVt----GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
++|+|||| |||||||++|+++|+++||+|++++|+......+.. .+... ...+++++.+|++| +.+++
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d---~~~~~ 126 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSEL-SSAGVKTVWGDPAD---VKSKV 126 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHh-hhcCceEEEecHHH---HHhhh
Confidence 46789999 999999999999999999999999998654221110 00000 12358899999987 44444
Q ss_pred --CCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020266 80 --DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (328)
Q Consensus 80 --~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 157 (328)
.++|+|||+++. +..++.+|+++|++. ++++|||+||.+ +|+.. ...+..|+++..|
T Consensus 127 ~~~~~d~Vi~~~~~---------------~~~~~~~ll~aa~~~-gvkr~V~~SS~~-vyg~~----~~~p~~E~~~~~p 185 (378)
T PLN00016 127 AGAGFDVVYDNNGK---------------DLDEVEPVADWAKSP-GLKQFLFCSSAG-VYKKS----DEPPHVEGDAVKP 185 (378)
T ss_pred ccCCccEEEeCCCC---------------CHHHHHHHHHHHHHc-CCCEEEEEccHh-hcCCC----CCCCCCCCCcCCC
Confidence 479999998752 144688999999987 889999999976 55432 2235667665554
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC--C--CCCCccceeH
Q 020266 158 EVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT--Y--PNVTFGWVNV 233 (328)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~v~v 233 (328)
. . +|..+|.+++ +.+++++++||+.+|||+.... ....++.++..+.++ . +.+.++|+|+
T Consensus 186 ~---------~-sK~~~E~~l~----~~~l~~~ilRp~~vyG~~~~~~--~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v 249 (378)
T PLN00016 186 K---------A-GHLEVEAYLQ----KLGVNWTSFRPQYIYGPGNNKD--CEEWFFDRLVRGRPVPIPGSGIQLTQLGHV 249 (378)
T ss_pred c---------c-hHHHHHHHHH----HcCCCeEEEeceeEECCCCCCc--hHHHHHHHHHcCCceeecCCCCeeeceecH
Confidence 2 2 8999998774 3589999999999999975432 223345566666642 2 4677899999
Q ss_pred HHHHHHHHHhhcCCCC-CCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCC----------CCCCCceecchHHH-H
Q 020266 234 KDVANAHIQAFEVPSA-NGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADD----------KPHVPTYQVLKEKV-K 300 (328)
Q Consensus 234 ~D~a~~~~~~~~~~~~-~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~k~-~ 300 (328)
+|+|++++.++.++.. +++||+++ +.+|+.|+++.+.+.+|........... +.....+..|++|+ +
T Consensus 250 ~Dva~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~~ 329 (378)
T PLN00016 250 KDLASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAKE 329 (378)
T ss_pred HHHHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCHHHHHH
Confidence 9999999999988644 45899986 7899999999999998853211100000 11123455799999 8
Q ss_pred hcCCc-cccHHHHHHHHHHHHHHcCCC
Q 020266 301 NLGIE-FIPVEVSLKETIESLKEKGFV 326 (328)
Q Consensus 301 ~lg~~-~~~~~~~l~~~~~~~~~~~~~ 326 (328)
.|||+ .++++++|+++++||+.++..
T Consensus 330 ~LGw~p~~~l~egl~~~~~~~~~~~~~ 356 (378)
T PLN00016 330 ELGWTPKFDLVEDLKDRYELYFGRGRD 356 (378)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 89999 789999999999999998874
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=258.97 Aligned_cols=268 Identities=21% Similarity=0.198 Sum_probs=188.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 87 (328)
||||||||+|+||++|.++|.++|++|+++.|. ..|++|.+.+.++++ ++|+|||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-----------------------~~dl~d~~~~~~~~~~~~pd~Vin 57 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS-----------------------DLDLTDPEAVAKLLEAFKPDVVIN 57 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-----------------------CS-TTSHHHHHHHHHHH--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-----------------------hcCCCCHHHHHHHHHHhCCCeEec
Confidence 689999999999999999999999999999777 268899888888887 5899999
Q ss_pred ccCCCC-CCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 88 TASPFY-HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 88 ~a~~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
|||... +....+.+..+.+|+.++.+|+++|... +. ++||+||..++.|. ...+++|++++.|. +.
T Consensus 58 ~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~-~~-~li~~STd~VFdG~-----~~~~y~E~d~~~P~------~~ 124 (286)
T PF04321_consen 58 CAAYTNVDACEKNPEEAYAINVDATKNLAEACKER-GA-RLIHISTDYVFDGD-----KGGPYTEDDPPNPL------NV 124 (286)
T ss_dssp ------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC-T--EEEEEEEGGGS-SS-----TSSSB-TTS----S------SH
T ss_pred cceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc-CC-cEEEeeccEEEcCC-----cccccccCCCCCCC------CH
Confidence 998743 2223334588999999999999999997 65 79999998766542 45678999988875 77
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHhh
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~v~D~a~~~~~~~ 244 (328)
||.+|+.+|..++... -+..|+|++.+||+... +++..++..+..+++ ...++.++.++++|+|+++..++
T Consensus 125 YG~~K~~~E~~v~~~~----~~~~IlR~~~~~g~~~~---~~~~~~~~~~~~~~~i~~~~d~~~~p~~~~dlA~~i~~l~ 197 (286)
T PF04321_consen 125 YGRSKLEGEQAVRAAC----PNALILRTSWVYGPSGR---NFLRWLLRRLRQGEPIKLFDDQYRSPTYVDDLARVILELI 197 (286)
T ss_dssp HHHHHHHHHHHHHHH-----SSEEEEEE-SEESSSSS---SHHHHHHHHHHCTSEEEEESSCEE--EEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCEEEEecceecccCCC---chhhhHHHHHhcCCeeEeeCCceeCCEEHHHHHHHHHHHH
Confidence 9999999999998843 38999999999999322 334445555555553 44688899999999999999999
Q ss_pred cCCCC----CCcEEEec-CccCHHHHHHHHHHhCCCCCC---CC--C-CCCCCCCCCceecchHHH-HhcCCccccHHHH
Q 020266 245 EVPSA----NGRYCLVE-RVSHYSEIVNIIRELYPAFQL---PE--K-CADDKPHVPTYQVLKEKV-KNLGIEFIPVEVS 312 (328)
Q Consensus 245 ~~~~~----~g~~~~~~-~~~~~~el~~~i~~~~~~~~~---~~--~-~~~~~~~~~~~~~~~~k~-~~lg~~~~~~~~~ 312 (328)
++... .|+||+++ +.+|..|+++.+++.++.... +. . ............+|++|+ +.+|++.++++++
T Consensus 198 ~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~~~~~~ 277 (286)
T PF04321_consen 198 EKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPPPWREG 277 (286)
T ss_dssp HHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS---BHHHH
T ss_pred HhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCcCHHHH
Confidence 87532 58999986 889999999999999874321 11 1 111123334678999999 7789999999999
Q ss_pred HHHHHHHH
Q 020266 313 LKETIESL 320 (328)
Q Consensus 313 l~~~~~~~ 320 (328)
|+++++.|
T Consensus 278 l~~~~~~~ 285 (286)
T PF04321_consen 278 LEELVKQY 285 (286)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=247.11 Aligned_cols=302 Identities=24% Similarity=0.298 Sum_probs=221.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+++.+++||||+||+|++|+++|++++ .+|++++..+............ ....++++.+|++|...+.++++++ .
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~--~~~~v~~~~~D~~~~~~i~~a~~~~-~ 78 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF--RSGRVTVILGDLLDANSISNAFQGA-V 78 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc--cCCceeEEecchhhhhhhhhhccCc-e
Confidence 346789999999999999999999998 8999999876533222222111 3568999999999999999999999 8
Q ss_pred EEEccCC-CCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 85 VCHTASP-FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 85 vih~a~~-~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
|+|+|+. .........+..+++|+.||.+++++|.+. +++++||+||.+++.+.. ....-+|+.|... ..
T Consensus 79 Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~-~v~~lIYtSs~~Vvf~g~----~~~n~~E~~p~p~----~~ 149 (361)
T KOG1430|consen 79 VVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL-GVKRLIYTSSAYVVFGGE----PIINGDESLPYPL----KH 149 (361)
T ss_pred EEEeccccCccccccchhhheeecchhHHHHHHHHHHh-CCCEEEEecCceEEeCCe----ecccCCCCCCCcc----cc
Confidence 8888775 333334334588999999999999999999 999999999998777421 1223344433222 23
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC----CCCCccceeHHHHHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY----PNVTFGWVNVKDVANA 239 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~v~D~a~~ 239 (328)
.+.|+.||..||.++.++....++.+++|||+.||||++.... ...+..+..|.-.+ ++..-++++++.++.+
T Consensus 150 ~d~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~---~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~a 226 (361)
T KOG1430|consen 150 IDPYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLL---PKIVEALKNGGFLFKIGDGENLNDFTYGENVAWA 226 (361)
T ss_pred ccccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCcccc---HHHHHHHHccCceEEeeccccccceEEechhHHH
Confidence 4569999999999999998666799999999999999976543 33333444444222 3567789999999998
Q ss_pred HHHhhc-----CCCCCC-cEEEec-CccCHHHHHHHHHHhCCCC-C----CCCCC---------------C-CC------
Q 020266 240 HIQAFE-----VPSANG-RYCLVE-RVSHYSEIVNIIRELYPAF-Q----LPEKC---------------A-DD------ 285 (328)
Q Consensus 240 ~~~~~~-----~~~~~g-~~~~~~-~~~~~~el~~~i~~~~~~~-~----~~~~~---------------~-~~------ 285 (328)
.+.|.. .+..+| .|++.+ .++...++...+.+.+|.. + .|.+. . ..
T Consensus 227 hilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~ 306 (361)
T KOG1430|consen 227 HILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRF 306 (361)
T ss_pred HHHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChh
Confidence 877653 344466 888886 6777777777888888732 1 11110 0 01
Q ss_pred --CCCCCceecchHHH-HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 286 --KPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 286 --~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
.......+++.+|+ +.+||. ..++++++.+++.|....
T Consensus 307 ~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~ 348 (361)
T KOG1430|consen 307 RVALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASE 348 (361)
T ss_pred heeeeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhh
Confidence 11113456899999 999999 999999999999977543
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=248.75 Aligned_cols=226 Identities=25% Similarity=0.348 Sum_probs=184.9
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--ccEEEEcc
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGVCHTA 89 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vih~a 89 (328)
|||||||||||++++++|+++|++|+.+.|+..+....... .+++++.+|++|.+.+.++++. +|+|||+|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~-------~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a 73 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK-------LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLA 73 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH-------TTEEEEESETTSHHHHHHHHHHHTESEEEEEB
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc-------ceEEEEEeeccccccccccccccCceEEEEee
Confidence 79999999999999999999999999999987765432222 1689999999999999999985 59999999
Q ss_pred CCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhh
Q 020266 90 SPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (328)
Q Consensus 90 ~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 168 (328)
+.... .........++.|+.++.+++++|++. +++++|++||.+ .|+.. ...+++|+.+..|. +.|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~sS~~-~y~~~----~~~~~~e~~~~~~~------~~Y~ 141 (236)
T PF01370_consen 74 AFSSNPESFEDPEEIIEANVQGTRNLLEAAREA-GVKRFIFLSSAS-VYGDP----DGEPIDEDSPINPL------SPYG 141 (236)
T ss_dssp SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEGG-GGTSS----SSSSBETTSGCCHS------SHHH
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc----cccccccccccccc------cccc
Confidence 97531 111233478889999999999999998 678999999965 66432 45678888877653 6699
Q ss_pred hhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC--CCCCCcchHHHHHHHHhCCC--C--CCCCCccceeHHHHHHHHHH
Q 020266 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL--LQPTLNTSAAAVLSLIKGAQ--T--YPNVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 169 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~--~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~v~v~D~a~~~~~ 242 (328)
.+|..+|++++.+.++++++++++||+.+|||. .......+..++.++..+++ . -+++.++|+|++|+|++++.
T Consensus 142 ~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 221 (236)
T PF01370_consen 142 ASKRAAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVA 221 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHH
Confidence 999999999999999899999999999999998 12223456678888888884 2 25788999999999999999
Q ss_pred hhcCCC-CCCcEEEe
Q 020266 243 AFEVPS-ANGRYCLV 256 (328)
Q Consensus 243 ~~~~~~-~~g~~~~~ 256 (328)
+++++. .+++||++
T Consensus 222 ~~~~~~~~~~~yNig 236 (236)
T PF01370_consen 222 ALENPKAAGGIYNIG 236 (236)
T ss_dssp HHHHSCTTTEEEEES
T ss_pred HHhCCCCCCCEEEeC
Confidence 999987 56699974
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=236.48 Aligned_cols=266 Identities=18% Similarity=0.151 Sum_probs=214.1
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEEEc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCHT 88 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 88 (328)
+|||||++|++|+.|++.|. .+++|++++|.. .|++|++.+.++++ ++|+|||+
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~-----------------------~Ditd~~~v~~~i~~~~PDvVIn~ 57 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAE-----------------------LDITDPDAVLEVIRETRPDVVINA 57 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc-----------------------ccccChHHHHHHHHhhCCCEEEEC
Confidence 49999999999999999998 668999998874 69999999999998 68999999
Q ss_pred cCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 89 ASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 89 a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
|+.... ..+.+.+..+.+|..|+.++.++|.+. +. ++||+||.+++.|. ...+..|++++.|. +.|
T Consensus 58 AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~-ga-~lVhiSTDyVFDG~-----~~~~Y~E~D~~~P~------nvY 124 (281)
T COG1091 58 AAYTAVDKAESEPELAFAVNATGAENLARAAAEV-GA-RLVHISTDYVFDGE-----KGGPYKETDTPNPL------NVY 124 (281)
T ss_pred ccccccccccCCHHHHHHhHHHHHHHHHHHHHHh-CC-eEEEeecceEecCC-----CCCCCCCCCCCCCh------hhh
Confidence 998543 234444688999999999999999998 65 69999999877652 35689999999986 679
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHhhc
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQAFE 245 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~v~D~a~~~~~~~~ 245 (328)
|.||+++|..++++. -+.+|+|.+.+||... .+++..++.....+.+ ..-+|..+.+++.|+|+++..++.
T Consensus 125 G~sKl~GE~~v~~~~----~~~~I~Rtswv~g~~g---~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~ 197 (281)
T COG1091 125 GRSKLAGEEAVRAAG----PRHLILRTSWVYGEYG---NNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLE 197 (281)
T ss_pred hHHHHHHHHHHHHhC----CCEEEEEeeeeecCCC---CCHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHh
Confidence 999999999998764 6799999999999864 2445555666666654 346899999999999999999999
Q ss_pred CCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC-C--CCCC---CCCCCCCCceecchHHH-HhcCCccccHHHHHHHHH
Q 020266 246 VPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ-L--PEKC---ADDKPHVPTYQVLKEKV-KNLGIEFIPVEVSLKETI 317 (328)
Q Consensus 246 ~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~-~--~~~~---~~~~~~~~~~~~~~~k~-~~lg~~~~~~~~~l~~~~ 317 (328)
.....|+|++++ +..||-|+++.|.+.++... + +... +...+......+|+.|+ +.+|+..+++++++++++
T Consensus 198 ~~~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~~w~~~l~~~~ 277 (281)
T COG1091 198 KEKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLPEWREALKALL 277 (281)
T ss_pred ccccCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCccHHHHHHHHH
Confidence 876777999987 66799999999999987322 1 1111 11122223456899999 888999999999999998
Q ss_pred HHH
Q 020266 318 ESL 320 (328)
Q Consensus 318 ~~~ 320 (328)
+.+
T Consensus 278 ~~~ 280 (281)
T COG1091 278 DEL 280 (281)
T ss_pred hhc
Confidence 753
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=261.45 Aligned_cols=268 Identities=19% Similarity=0.195 Sum_probs=187.4
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCC---CeEEEEecCCCChhhhhhhh----hc---------cC------CCCcEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLL----AL---------DG------ASERLQ 63 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~----~~---------~~------~~~~~~ 63 (328)
-+++|+|||||||||||++|+++|++.+ .+|+++.|..+......++. .. .+ ...+++
T Consensus 8 ~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~ 87 (491)
T PLN02996 8 FLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVT 87 (491)
T ss_pred HhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEE
Confidence 3578999999999999999999999864 36899999665433222210 00 00 015799
Q ss_pred EEEccCCCc-------CchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhh
Q 020266 64 LFKANLLEE-------GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAV 136 (328)
Q Consensus 64 ~~~~Dl~~~-------~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~ 136 (328)
++.||++++ +.+.++++++|+|||+||.+... .+.....++|+.|+.+|+++|++..++++|||+||.+ +
T Consensus 88 ~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~-v 164 (491)
T PLN02996 88 PVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFD--ERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAY-V 164 (491)
T ss_pred EEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCc--CCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeE-E
Confidence 999999854 33567788999999999986543 2345788999999999999998864678999999976 4
Q ss_pred ccCCCCCCCCccccCCC-CC----------------------------------------CccccccCCchhhhhhHHHH
Q 020266 137 LNTGKPRTPDVVVDETW-FS----------------------------------------DPEVCKQSELWYPLSKTLAE 175 (328)
Q Consensus 137 ~~~~~~~~~~~~~~E~~-~~----------------------------------------~~~~~~~~~~~Y~~sK~~~E 175 (328)
||.......+.+.++.. +. .+.....+.+.|+.||.++|
T Consensus 165 yG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE 244 (491)
T PLN02996 165 CGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGE 244 (491)
T ss_pred ecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHH
Confidence 54321111111111100 00 00001224577999999999
Q ss_pred HHHHHHHHhcCccEEEEcCCcccCCCCCCCCcch------HHHHHHHHhCCC--CC--CCCCccceeHHHHHHHHHHhhc
Q 020266 176 DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTS------AAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANAHIQAFE 245 (328)
Q Consensus 176 ~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~------~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~~~~~~~~ 245 (328)
.++..++. +++++++||++|+||...+...++ ..++.....|.. .+ |++.+|++||||+|++++.++.
T Consensus 245 ~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~ 322 (491)
T PLN02996 245 MLLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMA 322 (491)
T ss_pred HHHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHH
Confidence 99988753 899999999999999866532221 223333444542 22 5779999999999999999987
Q ss_pred CC--C--CCCcEEEe-c--CccCHHHHHHHHHHhCCCCCC
Q 020266 246 VP--S--ANGRYCLV-E--RVSHYSEIVNIIRELYPAFQL 278 (328)
Q Consensus 246 ~~--~--~~g~~~~~-~--~~~~~~el~~~i~~~~~~~~~ 278 (328)
.. . ...+||++ + .++|+.|+++.+.+.++..+.
T Consensus 323 ~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~ 362 (491)
T PLN02996 323 AHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPW 362 (491)
T ss_pred HhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCC
Confidence 52 1 23489997 4 578999999999998875544
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=244.62 Aligned_cols=263 Identities=16% Similarity=0.220 Sum_probs=192.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|+|||||||||++++++|+++||+|++++|+.++...+. ..+++++.+|++|++++.++++++|+|||++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~--------~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK--------EWGAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh--------hcCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 47999999999999999999999999999999865432211 1368999999999999999999999999997
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhh
Q 020266 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (328)
Q Consensus 90 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 169 (328)
+... .+. ....++|+.++.+++++|++. ++++|||+||.++.. . +.++|..
T Consensus 73 ~~~~---~~~-~~~~~~~~~~~~~l~~aa~~~-gvkr~I~~Ss~~~~~------~------------------~~~~~~~ 123 (317)
T CHL00194 73 TSRP---SDL-YNAKQIDWDGKLALIEAAKAA-KIKRFIFFSILNAEQ------Y------------------PYIPLMK 123 (317)
T ss_pred CCCC---CCc-cchhhhhHHHHHHHHHHHHHc-CCCEEEEeccccccc------c------------------CCChHHH
Confidence 6432 122 256788999999999999998 899999999953211 0 0134889
Q ss_pred hhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC---CCCCccceeHHHHHHHHHHhhcC
Q 020266 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY---PNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 170 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
+|..+|.+++ +.+++++++||+.+|+.... ......+.+.+.+ +++.++|+|++|+|++++.++.+
T Consensus 124 ~K~~~e~~l~----~~~l~~tilRp~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~ 192 (317)
T CHL00194 124 LKSDIEQKLK----KSGIPYTIFRLAGFFQGLIS-------QYAIPILEKQPIWITNESTPISYIDTQDAAKFCLKSLSL 192 (317)
T ss_pred HHHHHHHHHH----HcCCCeEEEeecHHhhhhhh-------hhhhhhccCCceEecCCCCccCccCHHHHHHHHHHHhcC
Confidence 9999999875 36899999999988864211 1112222333322 46678999999999999999987
Q ss_pred CCCC-CcEEEec-CccCHHHHHHHHHHhCCCC----CCCCCCC-----------C--CCC----------CCCceecchH
Q 020266 247 PSAN-GRYCLVE-RVSHYSEIVNIIRELYPAF----QLPEKCA-----------D--DKP----------HVPTYQVLKE 297 (328)
Q Consensus 247 ~~~~-g~~~~~~-~~~~~~el~~~i~~~~~~~----~~~~~~~-----------~--~~~----------~~~~~~~~~~ 297 (328)
+... ++||+++ +.+|++|+++.+.+.+|.. .+|.+.. . ..+ .......+.+
T Consensus 193 ~~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 272 (317)
T CHL00194 193 PETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSSMA 272 (317)
T ss_pred ccccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCCHH
Confidence 6544 4999986 7899999999999998752 1222110 0 000 0011234677
Q ss_pred HH-HhcCCc---cccHHHHHHHHHHHH
Q 020266 298 KV-KNLGIE---FIPVEVSLKETIESL 320 (328)
Q Consensus 298 k~-~~lg~~---~~~~~~~l~~~~~~~ 320 (328)
.+ +.+|+. ..++++++++.+...
T Consensus 273 ~~~~~~g~~p~~~~~~~~~~~~~~~~~ 299 (317)
T CHL00194 273 ELYKIFKIDPNELISLEDYFQEYFERI 299 (317)
T ss_pred HHHHHhCCChhhhhhHHHHHHHHHHHH
Confidence 78 888987 367888888877644
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=264.09 Aligned_cols=246 Identities=20% Similarity=0.197 Sum_probs=188.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|+|||||||||++++++|+++|++|++++|+..... ..++.++.+|++|.+++.++++++|+|||+|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~-----------~~~v~~v~gDL~D~~~l~~al~~vD~VVHlA 69 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSW-----------PSSADFIAADIRDATAVESAMTGADVVAHCA 69 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhc-----------ccCceEEEeeCCCHHHHHHHHhCCCEEEECC
Confidence 47999999999999999999999999999999743210 1257889999999999999999999999999
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhh
Q 020266 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (328)
Q Consensus 90 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 169 (328)
+.... .+++|+.++.+++++|++. ++++||++||.+
T Consensus 70 a~~~~--------~~~vNv~GT~nLLeAa~~~-gvkr~V~iSS~~----------------------------------- 105 (854)
T PRK05865 70 WVRGR--------NDHINIDGTANVLKAMAET-GTGRIVFTSSGH----------------------------------- 105 (854)
T ss_pred Ccccc--------hHHHHHHHHHHHHHHHHHc-CCCeEEEECCcH-----------------------------------
Confidence 75321 4678999999999999998 788999999941
Q ss_pred hhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC--C--CCCccceeHHHHHHHHHHhhc
Q 020266 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY--P--NVTFGWVNVKDVANAHIQAFE 245 (328)
Q Consensus 170 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~v~v~D~a~~~~~~~~ 245 (328)
|..+|.++. +++++++++||+++|||+.. .++..+.. .+.+ + ...++|+|++|+|+++..++.
T Consensus 106 -K~aaE~ll~----~~gl~~vILRp~~VYGP~~~-------~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~ 172 (854)
T PRK05865 106 -QPRVEQMLA----DCGLEWVAVRCALIFGRNVD-------NWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALL 172 (854)
T ss_pred -HHHHHHHHH----HcCCCEEEEEeceEeCCChH-------HHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHh
Confidence 667887774 36899999999999999621 23333322 2222 2 445699999999999999987
Q ss_pred CCC-CCCcEEEec-CccCHHHHHHHHHHhCCCCCCCC--CCC---CCCCCCCceecchHHH-HhcCCc-cccHHHHHHHH
Q 020266 246 VPS-ANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPE--KCA---DDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKET 316 (328)
Q Consensus 246 ~~~-~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~ 316 (328)
++. .+++||+++ +.+|++|+++.+.+.......+. ... ..........+|++|+ +.|||+ .++++++|+++
T Consensus 173 ~~~~~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~dt 252 (854)
T PRK05865 173 DTVIDSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAEECLEDF 252 (854)
T ss_pred CCCcCCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCCHHHHHHHH
Confidence 543 356999986 78999999999987532111111 000 0011122446899999 889999 88999999999
Q ss_pred HHHHHHc
Q 020266 317 IESLKEK 323 (328)
Q Consensus 317 ~~~~~~~ 323 (328)
++||+++
T Consensus 253 i~~~r~r 259 (854)
T PRK05865 253 TLAVRGR 259 (854)
T ss_pred HHHHHhh
Confidence 9999874
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=220.29 Aligned_cols=285 Identities=16% Similarity=0.179 Sum_probs=217.6
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 84 (328)
+|+|||||++|.+|++|.+.+.+.|. +-.++.-+ -.+||++.++.+++++ .+..
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s----------------------kd~DLt~~a~t~~lF~~ekPth 58 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS----------------------KDADLTNLADTRALFESEKPTH 58 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc----------------------ccccccchHHHHHHHhccCCce
Confidence 47899999999999999999999875 33333222 2279999999999997 6899
Q ss_pred EEEccCCCCC---CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 85 VCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 85 vih~a~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
|||+||.+.. ....+. +++..|+....|++..|.++ ++++++++.|++ +|. .....|++|+.....+ +.
T Consensus 59 VIhlAAmVGGlf~N~~ynl-dF~r~Nl~indNVlhsa~e~-gv~K~vsclStC-IfP----dkt~yPIdEtmvh~gp-ph 130 (315)
T KOG1431|consen 59 VIHLAAMVGGLFHNNTYNL-DFIRKNLQINDNVLHSAHEH-GVKKVVSCLSTC-IFP----DKTSYPIDETMVHNGP-PH 130 (315)
T ss_pred eeehHhhhcchhhcCCCch-HHHhhcceechhHHHHHHHh-chhhhhhhccee-ecC----CCCCCCCCHHHhccCC-CC
Confidence 9999987543 334444 88999999999999999998 888999999976 552 3456788887543321 11
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC---cchHHHHHHH---HhCC----CCC--CCCCcc
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSL---IKGA----QTY--PNVTFG 229 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~---~~~~----~~~--~~~~~~ 229 (328)
...-+|+..|+.+....+.|+.++|.+.+.+-|.++|||.++..- .-++.++++. ...+ ..| |...|+
T Consensus 131 psN~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRq 210 (315)
T KOG1431|consen 131 PSNFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQ 210 (315)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHH
Confidence 123359999999999999999999999999999999999765332 2245555553 3333 234 467899
Q ss_pred ceeHHHHHHHHHHhhcCCCCCCcEEEe-c--CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCc-
Q 020266 230 WVNVKDVANAHIQAFEVPSANGRYCLV-E--RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE- 305 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~~~g~~~~~-~--~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~- 305 (328)
|+|++|+|+++++++++-+.-...+++ + +.+|++|+++++.++++-..--.+....+....+-..|++|+..++|.
T Consensus 211 Fiys~DLA~l~i~vlr~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasnsKL~sl~pd~ 290 (315)
T KOG1431|consen 211 FIYSDDLADLFIWVLREYEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASNSKLRSLLPDF 290 (315)
T ss_pred HhhHhHHHHHHHHHHHhhcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccchHHHHHhCCCc
Confidence 999999999999999986554455554 4 489999999999999874333334344344556677899999889887
Q ss_pred -cccHHHHHHHHHHHHHHc
Q 020266 306 -FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 306 -~~~~~~~l~~~~~~~~~~ 323 (328)
.+++++++.++++||.++
T Consensus 291 ~ft~l~~ai~~t~~Wy~~N 309 (315)
T KOG1431|consen 291 KFTPLEQAISETVQWYLDN 309 (315)
T ss_pred ccChHHHHHHHHHHHHHHh
Confidence 677999999999999875
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=240.67 Aligned_cols=272 Identities=18% Similarity=0.189 Sum_probs=185.3
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEccCC
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTASP 91 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a~~ 91 (328)
|||||||||||+++++.|+++|++|++++|+..+...... .. ..|+.. ......+.++|+|||+|+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----------~~--~~~~~~-~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW----------EG--YKPWAP-LAESEALEGADAVINLAGE 67 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc----------ee--eecccc-cchhhhcCCCCEEEECCCC
Confidence 6999999999999999999999999999998765432110 01 112222 3455667789999999986
Q ss_pred CCC---CCCCcchhhhhHHHHHHHHHHHHHhcCCCc--cEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 92 FYH---DAKDPQVELLDPAVKGTLNVLNSCAKFPSI--KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 92 ~~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
... ...+.....+++|+.++.+++++|++. ++ .+||+.||++ +|+.. ...+++|+.++.+. +.
T Consensus 68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~~i~~S~~~-~yg~~----~~~~~~E~~~~~~~------~~ 135 (292)
T TIGR01777 68 PIADKRWTEERKQEIRDSRIDTTRALVEAIAAA-EQKPKVFISASAVG-YYGTS----EDRVFTEEDSPAGD------DF 135 (292)
T ss_pred CcccccCCHHHHHHHHhcccHHHHHHHHHHHhc-CCCceEEEEeeeEE-EeCCC----CCCCcCcccCCCCC------Ch
Confidence 432 112223467789999999999999998 54 3466666643 55432 23467787644332 34
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHH--HhCCC-CCCCCCccceeHHHHHHHHHHh
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSL--IKGAQ-TYPNVTFGWVNVKDVANAHIQA 243 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~v~v~D~a~~~~~~ 243 (328)
|+..|...|.....+ ++.+++++++||+.+|||.... ...++... ..+.+ ..+++.++|+|++|+|+++..+
T Consensus 136 ~~~~~~~~e~~~~~~-~~~~~~~~ilR~~~v~G~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~i~v~Dva~~i~~~ 210 (292)
T TIGR01777 136 LAELCRDWEEAAQAA-EDLGTRVVLLRTGIVLGPKGGA----LAKMLPPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFA 210 (292)
T ss_pred HHHHHHHHHHHhhhc-hhcCCceEEEeeeeEECCCcch----hHHHHHHHhcCcccccCCCCcccccEeHHHHHHHHHHH
Confidence 666676777766544 3468999999999999996421 11222111 11112 2257789999999999999999
Q ss_pred hcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC---CCCCCCCC------CCCCCceecchHHHHhcCCc-cc-cHHH
Q 020266 244 FEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ---LPEKCADD------KPHVPTYQVLKEKVKNLGIE-FI-PVEV 311 (328)
Q Consensus 244 ~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~k~~~lg~~-~~-~~~~ 311 (328)
++++...|+||+++ +.+|++|+++.+++.++... +|.+.... ........++++|++++||+ .+ +++|
T Consensus 211 l~~~~~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 290 (292)
T TIGR01777 211 LENASISGPVNATAPEPVRNKEFAKALARALHRPAFFPVPAFVLRALLGEMADLLLKGQRVLPEKLLEAGFQFQYPDLDE 290 (292)
T ss_pred hcCcccCCceEecCCCccCHHHHHHHHHHHhCCCCcCcCCHHHHHHHhchhhHHHhCCcccccHHHHhcCCeeeCcChhh
Confidence 99876678999986 88999999999999987421 22211100 00112456788999779999 54 6887
Q ss_pred HH
Q 020266 312 SL 313 (328)
Q Consensus 312 ~l 313 (328)
++
T Consensus 291 ~~ 292 (292)
T TIGR01777 291 AL 292 (292)
T ss_pred cC
Confidence 64
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=257.31 Aligned_cols=296 Identities=21% Similarity=0.178 Sum_probs=206.4
Q ss_pred CeEEEECCccHHHHHHHHHHH--HCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcC------chHHhhCC
Q 020266 10 KVVCVTGASGYIASWLVKLLL--SRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG------SFDSIVDG 81 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~------~~~~~~~~ 81 (328)
|+|||||||||||++|+++|+ +.|++|++++|+... ..+..+.... ...+++++.+|++|++ .+.++ ++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~~~~~~~~-~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRLEALAAYW-GADRVVPLVGDLTEPGLGLSEADIAEL-GD 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHHHHHhc-CCCcEEEEecccCCccCCcCHHHHHHh-cC
Confidence 479999999999999999999 479999999996432 2222221111 1247899999999853 34444 78
Q ss_pred ccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
+|+||||||...... ......++|+.++.+++++|.+. ++++|||+||.++ ||.. ....+|+.+..+.
T Consensus 78 ~D~Vih~Aa~~~~~~--~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~~SS~~v-~g~~-----~~~~~e~~~~~~~--- 145 (657)
T PRK07201 78 IDHVVHLAAIYDLTA--DEEAQRAANVDGTRNVVELAERL-QAATFHHVSSIAV-AGDY-----EGVFREDDFDEGQ--- 145 (657)
T ss_pred CCEEEECceeecCCC--CHHHHHHHHhHHHHHHHHHHHhc-CCCeEEEEecccc-ccCc-----cCccccccchhhc---
Confidence 999999999754332 23467889999999999999997 7889999999764 4322 2234555432221
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCc------chHHHHHHHHhCC---CCC--CCCCccc
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN------TSAAAVLSLIKGA---QTY--PNVTFGW 230 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~------~~~~~~~~~~~~~---~~~--~~~~~~~ 230 (328)
.+.+.|+.+|..+|.++++ ..+++++++||+.+|||....... .+...+....... +.. +...+++
T Consensus 146 ~~~~~Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (657)
T PRK07201 146 GLPTPYHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNI 222 (657)
T ss_pred CCCCchHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeee
Confidence 1235699999999999875 358999999999999986432211 1122333331111 111 2456789
Q ss_pred eeHHHHHHHHHHhhcCCCCCC-cEEEec-CccCHHHHHHHHHHhCCCCC-------CCCCC----CC-------------
Q 020266 231 VNVKDVANAHIQAFEVPSANG-RYCLVE-RVSHYSEIVNIIRELYPAFQ-------LPEKC----AD------------- 284 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~~~g-~~~~~~-~~~~~~el~~~i~~~~~~~~-------~~~~~----~~------------- 284 (328)
+|++|+++++..++..+...| +||+++ +.++++|+++.+.+.++... +|.+. ..
T Consensus 223 v~vddva~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 302 (657)
T PRK07201 223 VPVDYVADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAVA 302 (657)
T ss_pred eeHHHHHHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHHHH
Confidence 999999999999988655544 999986 89999999999999987533 12110 00
Q ss_pred --C-------CCCCCceecchHHH-Hhc---CCccccHHHHHHHHHHHHHHc
Q 020266 285 --D-------KPHVPTYQVLKEKV-KNL---GIEFIPVEVSLKETIESLKEK 323 (328)
Q Consensus 285 --~-------~~~~~~~~~~~~k~-~~l---g~~~~~~~~~l~~~~~~~~~~ 323 (328)
. ........+|++++ +.| |+..+.+++.+...+++|..+
T Consensus 303 ~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 354 (657)
T PRK07201 303 TQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVPRLASYAPRLWDYWERH 354 (657)
T ss_pred HhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCCChHHHHHHHHHHHHhc
Confidence 0 00112346788888 777 677888899999988877655
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-31 Score=230.51 Aligned_cols=277 Identities=16% Similarity=0.180 Sum_probs=187.0
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|+.+...+.|+||||||+||||++|+++|+++|++|....+ |+.+.+.+...++
T Consensus 1 ~~~~~~~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~--------------------------~~~~~~~v~~~l~ 54 (298)
T PLN02778 1 SNGTAGSATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSG--------------------------RLENRASLEADID 54 (298)
T ss_pred CCCCCCCCCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecC--------------------------ccCCHHHHHHHHH
Confidence 44444445678999999999999999999999999875322 2222233333333
Q ss_pred --CccEEEEccCCCCCC----CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCC--CCCCCccccCC
Q 020266 81 --GCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGK--PRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~~~~----~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~--~~~~~~~~~E~ 152 (328)
++|+|||+||..... ........+++|+.++.+|+++|++. +++ ++++||.+ +|+... +.....+++|+
T Consensus 55 ~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~-gv~-~v~~sS~~-vy~~~~~~p~~~~~~~~Ee 131 (298)
T PLN02778 55 AVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER-GLV-LTNYATGC-IFEYDDAHPLGSGIGFKEE 131 (298)
T ss_pred hcCCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCC-EEEEecce-EeCCCCCCCcccCCCCCcC
Confidence 689999999975321 22234578999999999999999998 775 56677754 443221 11112356776
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcccee
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (328)
+++.+ +.+.|+.||+++|.++..++ +..++|+...+|++... ...++..++.+.+... ...+|+|
T Consensus 132 ~~p~~-----~~s~Yg~sK~~~E~~~~~y~-----~~~~lr~~~~~~~~~~~----~~~fi~~~~~~~~~~~-~~~s~~y 196 (298)
T PLN02778 132 DTPNF-----TGSFYSKTKAMVEELLKNYE-----NVCTLRVRMPISSDLSN----PRNFITKITRYEKVVN-IPNSMTI 196 (298)
T ss_pred CCCCC-----CCCchHHHHHHHHHHHHHhh-----ccEEeeecccCCccccc----HHHHHHHHHcCCCeeE-cCCCCEE
Confidence 65443 23679999999999998875 35678887777764221 2235666766654221 1247999
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCC----CCCCC-CCC-CCCCCCceecchHHH-HhcCC
Q 020266 233 VKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF----QLPEK-CAD-DKPHVPTYQVLKEKV-KNLGI 304 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~----~~~~~-~~~-~~~~~~~~~~~~~k~-~~lg~ 304 (328)
++|++++++.++.+. ..|+||+++ +.+|+.|+++.+++.++.. .+... ... .........+|++|+ +.++=
T Consensus 197 v~D~v~al~~~l~~~-~~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~~ 275 (298)
T PLN02778 197 LDELLPISIEMAKRN-LTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFPE 275 (298)
T ss_pred HHHHHHHHHHHHhCC-CCCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHHHHHhccc
Confidence 999999999999764 357999975 8899999999999999842 11111 000 001111236899999 66554
Q ss_pred ccccHHHHHHHHHHHHHH
Q 020266 305 EFIPVEVSLKETIESLKE 322 (328)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~ 322 (328)
.....+++++..++.++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~ 293 (298)
T PLN02778 276 LLPIKESLIKYVFEPNKK 293 (298)
T ss_pred ccchHHHHHHHHHHHHHh
Confidence 466678888888877744
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=216.66 Aligned_cols=304 Identities=20% Similarity=0.187 Sum_probs=232.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC--hhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhC--Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD--GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~--~~ 82 (328)
++|+.||||-||+-|+.|++.|++.|++|+++.|..+. .... ++.... ....++.++.||++|...+.++++ .+
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri-~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~P 79 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRI-HLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQP 79 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccc-eeccccccCCceeEEEeccccchHHHHHHHHhcCc
Confidence 36899999999999999999999999999999986443 2222 333222 134568999999999999999888 68
Q ss_pred cEEEEccCCCC-CCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020266 83 DGVCHTASPFY-HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (328)
Q Consensus 83 d~vih~a~~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 160 (328)
|-|+|+||... ....+.+....+++..|+.+|+++.+..+. .-||...|| +..||. .+..|.+|.+|..|.
T Consensus 80 dEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQASt-SE~fG~----v~~~pq~E~TPFyPr-- 152 (345)
T COG1089 80 DEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQAST-SELYGL----VQEIPQKETTPFYPR-- 152 (345)
T ss_pred hhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEeccc-HHhhcC----cccCccccCCCCCCC--
Confidence 99999999722 223333458889999999999999998743 347888888 577763 366788899888774
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC--CcchHHHHHHHHhCCC--C-CC--CCCccceeH
Q 020266 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT--LNTSAAAVLSLIKGAQ--T-YP--NVTFGWVNV 233 (328)
Q Consensus 161 ~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~--~-~~--~~~~~~v~v 233 (328)
|+|+.+|..+..+...|.+.+|+-++.=..++--+|..... .+.+...+.++..|.. + +| +..|||-|+
T Consensus 153 ----SPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A 228 (345)
T COG1089 153 ----SPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHA 228 (345)
T ss_pred ----CHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccch
Confidence 88999999999999999999999988888888888865432 2445566677777762 2 24 789999999
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEe-cCccCHHHHHHHHHHhCCCC-C-----------------CCCCCCC--CCCCCC-c
Q 020266 234 KDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPAF-Q-----------------LPEKCAD--DKPHVP-T 291 (328)
Q Consensus 234 ~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~el~~~i~~~~~~~-~-----------------~~~~~~~--~~~~~~-~ 291 (328)
.|-++++++.++++. ..-|++. ++..|++|+++...+..|.. . ......+ ..|... .
T Consensus 229 ~DYVe~mwlmLQq~~-PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV~~ 307 (345)
T COG1089 229 KDYVEAMWLMLQQEE-PDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDL 307 (345)
T ss_pred HHHHHHHHHHHccCC-CCceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchhhhh
Confidence 999999999999875 4567665 69999999999999988721 0 0011111 122222 2
Q ss_pred eecchHHH-HhcCCc-cccHHHHHHHHHHHHHHcC
Q 020266 292 YQVLKEKV-KNLGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 292 ~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
..-|++|+ ++|||+ .+++++-+++|+++-.+..
T Consensus 308 Llgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~ 342 (345)
T COG1089 308 LLGDPTKAKEKLGWRPEVSLEELVREMVEADLEAA 342 (345)
T ss_pred hcCCHHHHHHHcCCccccCHHHHHHHHHHHHHHHh
Confidence 44689999 899999 9999999999999876543
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=228.84 Aligned_cols=253 Identities=21% Similarity=0.226 Sum_probs=179.1
Q ss_pred eEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhh---hhccC------CCCcEEEEEccCCCcC------
Q 020266 11 VVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHL---LALDG------ASERLQLFKANLLEEG------ 73 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~---~~~~~------~~~~~~~~~~Dl~~~~------ 73 (328)
+|||||||||||++|+++|+++| .+|+++.|+.+......++ ..... ...+++++.+|++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58999999999999999999999 6799999987643222111 11100 0147999999998753
Q ss_pred chHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 74 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
.+..+.+++|+|||+|+..... .+.....++|+.++.+++++|.+. +.++|||+||.+++.... ..+..|++
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~~--~~~~~~~~~nv~g~~~ll~~a~~~-~~~~~v~iSS~~v~~~~~-----~~~~~~~~ 152 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNWV--YPYSELRAANVLGTREVLRLAASG-RAKPLHYVSTISVLAAID-----LSTVTEDD 152 (367)
T ss_pred HHHHHHhhCCEEEeCCcEeccC--CcHHHHhhhhhHHHHHHHHHHhhC-CCceEEEEccccccCCcC-----CCCccccc
Confidence 4566677899999999975532 334467789999999999999987 777899999986554211 11123433
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCC--CCCCCCCc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGA--QTYPNVTF 228 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~ 228 (328)
+..+. .....+.|+.+|..+|.+++.+... |++++++||+.++|+...... ..+..++......+ +.......
T Consensus 153 ~~~~~-~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 230 (367)
T TIGR01746 153 AIVTP-PPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPDSPELTE 230 (367)
T ss_pred ccccc-ccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCCCCCcccc
Confidence 32211 1112356999999999999987654 999999999999998433221 12223333333222 21122357
Q ss_pred cceeHHHHHHHHHHhhcCCCC---CCcEEEec-CccCHHHHHHHHHHhCC
Q 020266 229 GWVNVKDVANAHIQAFEVPSA---NGRYCLVE-RVSHYSEIVNIIRELYP 274 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~~---~g~~~~~~-~~~~~~el~~~i~~~~~ 274 (328)
+++|++|++++++.++.++.. +++||+++ +.++++|+++.+.+ .|
T Consensus 231 ~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g 279 (367)
T TIGR01746 231 DLTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AG 279 (367)
T ss_pred CcccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cC
Confidence 899999999999999887653 45899986 88999999999988 54
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-32 Score=229.29 Aligned_cols=232 Identities=21% Similarity=0.197 Sum_probs=178.2
Q ss_pred EEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEE----EEEccCCCcCchHHhhC--CccE
Q 020266 12 VCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQ----LFKANLLEEGSFDSIVD--GCDG 84 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~Dl~~~~~~~~~~~--~~d~ 84 (328)
||||||+|.||+.||++|++.+ .++++++|++...-.+...+......+++. .+.||++|.+.+..+++ ++|+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 7999999999999999999987 689999999888777766654333233443 45899999999999999 8999
Q ss_pred EEEccCC--CCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020266 85 VCHTASP--FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (328)
Q Consensus 85 vih~a~~--~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 162 (328)
|||.||. ++.. ++++.+++++|+.||.|++++|.++ ++++||++||.-++.
T Consensus 81 VfHaAA~KhVpl~-E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~------------------------- 133 (293)
T PF02719_consen 81 VFHAAALKHVPLM-EDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVN------------------------- 133 (293)
T ss_dssp EEE------HHHH-CCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS-------------------------
T ss_pred EEEChhcCCCChH-HhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCC-------------------------
Confidence 9999997 2223 3344599999999999999999998 999999999987654
Q ss_pred CCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC---CCCCccceeHHHH
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY---PNVTFGWVNVKDV 236 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~v~D~ 236 (328)
|.|.||.||+.+|.++..+.... +.+++++|+|+|.|.. .+-++.+..++..|+|+- ++..|=|+.++++
T Consensus 134 PtnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~----GSVip~F~~Qi~~g~PlTvT~p~mtRffmti~EA 209 (293)
T PF02719_consen 134 PTNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR----GSVIPLFKKQIKNGGPLTVTDPDMTRFFMTIEEA 209 (293)
T ss_dssp --SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT----TSCHHHHHHHHHTTSSEEECETT-EEEEE-HHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC----CcHHHHHHHHHHcCCcceeCCCCcEEEEecHHHH
Confidence 24779999999999999998765 6799999999999975 233667888888888743 5777889999999
Q ss_pred HHHHHHhhcCCCCCCcEEEe-cCccCHHHHHHHHHHhCC
Q 020266 237 ANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYP 274 (328)
Q Consensus 237 a~~~~~~~~~~~~~g~~~~~-~~~~~~~el~~~i~~~~~ 274 (328)
++.++.++.....+.+|.+- ++++++.|+++.+-+..|
T Consensus 210 v~Lvl~a~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g 248 (293)
T PF02719_consen 210 VQLVLQAAALAKGGEIFVLDMGEPVKILDLAEAMIELSG 248 (293)
T ss_dssp HHHHHHHHHH--TTEEEEE---TCEECCCHHHHHHHHTT
T ss_pred HHHHHHHHhhCCCCcEEEecCCCCcCHHHHHHHHHhhcc
Confidence 99999999876544588876 699999999999999887
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=212.63 Aligned_cols=277 Identities=17% Similarity=0.204 Sum_probs=190.7
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-CccEEEEccC
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-GCDGVCHTAS 90 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~vih~a~ 90 (328)
|+|||||||||++|+..|.+.||+|+++.|++.+...... ..++ ..+.+.+... ++|+|||+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~--------~~v~-------~~~~~~~~~~~~~DavINLAG 65 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLH--------PNVT-------LWEGLADALTLGIDAVINLAG 65 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcC--------cccc-------ccchhhhcccCCCCEEEECCC
Confidence 6899999999999999999999999999998876544111 1111 2233444444 7999999999
Q ss_pred C--CCC-CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 91 P--FYH-DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 91 ~--~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
. ... +..+..+...+.-+..|..|.++..+.. +.+.+|.-|.+ .+||+. .+..++|+.++..+
T Consensus 66 ~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAv-GyYG~~----~~~~~tE~~~~g~~-------- 132 (297)
T COG1090 66 EPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAV-GYYGHS----GDRVVTEESPPGDD-------- 132 (297)
T ss_pred CccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceE-EEecCC----CceeeecCCCCCCC--------
Confidence 6 223 4455556778889999999999887542 44455555554 477643 67889998665543
Q ss_pred hhhhhHHH-HHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhc
Q 020266 167 YPLSKTLA-EDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245 (328)
Q Consensus 167 Y~~sK~~~-E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~ 245 (328)
+-.-=... |... ..++..|.+++++|.|.|.+|.... .......++-.+.|+-..|.|+++|||++|++++|.++++
T Consensus 133 Fla~lc~~WE~~a-~~a~~~gtRvvllRtGvVLs~~GGa-L~~m~~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~ 210 (297)
T COG1090 133 FLAQLCQDWEEEA-LQAQQLGTRVVLLRTGVVLSPDGGA-LGKMLPLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLE 210 (297)
T ss_pred hHHHHHHHHHHHH-hhhhhcCceEEEEEEEEEecCCCcc-hhhhcchhhhccCCccCCCCceeeeeeHHHHHHHHHHHHh
Confidence 21111111 2222 1223458999999999999985321 1112222222333333447899999999999999999999
Q ss_pred CCCCCCcEEEec-CccCHHHHHHHHHHhCCCC---CCCCCCCCCC------CCCCceecchHHHHhcCCc--cccHHHHH
Q 020266 246 VPSANGRYCLVE-RVSHYSEIVNIIRELYPAF---QLPEKCADDK------PHVPTYQVLKEKVKNLGIE--FIPVEVSL 313 (328)
Q Consensus 246 ~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~k~~~lg~~--~~~~~~~l 313 (328)
+....|.||++. .+++..++..++.+.+... ++|....... .......+-++|+...||+ .++++++|
T Consensus 211 ~~~lsGp~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~aGF~F~y~dl~~AL 290 (297)
T COG1090 211 NEQLSGPFNLTAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQRVLPKKLEAAGFQFQYPDLEEAL 290 (297)
T ss_pred CcCCCCcccccCCCcCcHHHHHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccchhhHHHHHHCCCeeecCCHHHHH
Confidence 998999999986 8999999999999999742 3333221111 1122345668888888988 88999999
Q ss_pred HHHHH
Q 020266 314 KETIE 318 (328)
Q Consensus 314 ~~~~~ 318 (328)
++.+.
T Consensus 291 ~~il~ 295 (297)
T COG1090 291 ADILK 295 (297)
T ss_pred HHHHh
Confidence 98874
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=229.63 Aligned_cols=239 Identities=20% Similarity=0.184 Sum_probs=201.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--c
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--C 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~ 82 (328)
..++|+||||||+|-||+.+|+++++.+ .+++.++|++.+.-.....++......++.++.||++|.+.+..++++ +
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 3469999999999999999999999986 678999999988777666665544457899999999999999999997 9
Q ss_pred cEEEEccCC-CCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 83 DGVCHTASP-FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 83 d~vih~a~~-~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
|+|||+||. ..+..+.++.+.+++|+.||.|++++|.+. ++++||.+||.-+++
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~------------------------ 381 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVN------------------------ 381 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccC------------------------
Confidence 999999997 223334555699999999999999999998 999999999998887
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcC---ccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC---CCCCccceeHHH
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKS---IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY---PNVTFGWVNVKD 235 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~---~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~v~D 235 (328)
|.|.||.||+.+|.++.++....+ -+++++|+|||.|... +-++-+.+++.+|+|+- |+..|=|+.+.|
T Consensus 382 -PtNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG----SViPlFk~QI~~GgplTvTdp~mtRyfMTI~E 456 (588)
T COG1086 382 -PTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG----SVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPE 456 (588)
T ss_pred -CchHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC----CCHHHHHHHHHcCCCccccCCCceeEEEEHHH
Confidence 246799999999999999977443 7899999999999852 22555667777887643 567778999999
Q ss_pred HHHHHHHhhcCCCCCCcEEEe-cCccCHHHHHHHHHHhCC
Q 020266 236 VANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYP 274 (328)
Q Consensus 236 ~a~~~~~~~~~~~~~g~~~~~-~~~~~~~el~~~i~~~~~ 274 (328)
+++.++.+......+.+|.+- |+++++.|+++.+-+..|
T Consensus 457 Av~LVlqA~a~~~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 457 AVQLVLQAGAIAKGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHHHHHHHHhhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 999999999986555588887 699999999999988886
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=228.17 Aligned_cols=229 Identities=16% Similarity=0.138 Sum_probs=173.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----Cc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~ 82 (328)
.++++|+|||||||||++++++|+++|++|+++.|+..+..............++++++.+|++|++++.++++ ++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~ 137 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV 137 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 35789999999999999999999999999999999765432100000000012468999999999999999887 59
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 162 (328)
|+||||++..... ....+++|+.++.+++++|++. ++++||++||.++ ++
T Consensus 138 D~Vi~~aa~~~~~----~~~~~~vn~~~~~~ll~aa~~~-gv~r~V~iSS~~v-~~------------------------ 187 (390)
T PLN02657 138 DVVVSCLASRTGG----VKDSWKIDYQATKNSLDAGREV-GAKHFVLLSAICV-QK------------------------ 187 (390)
T ss_pred cEEEECCccCCCC----CccchhhHHHHHHHHHHHHHHc-CCCEEEEEeeccc-cC------------------------
Confidence 9999998853221 1245678999999999999998 8899999999753 31
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC--CCCC--Cc-cceeHHHHH
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT--YPNV--TF-GWVNVKDVA 237 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~-~~v~v~D~a 237 (328)
+...|..+|..+|..+.. ...+++++++||+.+||+. ...+..+..+++. +++. .+ ++||++|+|
T Consensus 188 p~~~~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~--------~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA 257 (390)
T PLN02657 188 PLLEFQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL--------GGQVEIVKDGGPYVMFGDGKLCACKPISEADLA 257 (390)
T ss_pred cchHHHHHHHHHHHHHHh--ccCCCCEEEEccHHHhccc--------HHHHHhhccCCceEEecCCcccccCceeHHHHH
Confidence 013388999999998865 3468999999999999752 1234444556543 3433 33 579999999
Q ss_pred HHHHHhhcCCCCC-CcEEEec--CccCHHHHHHHHHHhCCC
Q 020266 238 NAHIQAFEVPSAN-GRYCLVE--RVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 238 ~~~~~~~~~~~~~-g~~~~~~--~~~~~~el~~~i~~~~~~ 275 (328)
++++.++.++... .+||+++ +.+|++|+++.+.+.+|.
T Consensus 258 ~~i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~ 298 (390)
T PLN02657 258 SFIADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGK 298 (390)
T ss_pred HHHHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCC
Confidence 9999999765443 4899975 489999999999999885
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=215.86 Aligned_cols=220 Identities=24% Similarity=0.259 Sum_probs=133.3
Q ss_pred EECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhcc-----------CCCCcEEEEEccCCCcC------c
Q 020266 14 VTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALD-----------GASERLQLFKANLLEEG------S 74 (328)
Q Consensus 14 VtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Dl~~~~------~ 74 (328)
|||||||||++|+++|++++. +|+++.|..+......++.... ....+++++.||++++. +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999876 8999999876544433331111 01579999999999764 4
Q ss_pred hHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCcc--ccCC
Q 020266 75 FDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVV--VDET 152 (328)
Q Consensus 75 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~--~~E~ 152 (328)
+..+.+.+|+||||||.++... +..+..++|+.|+++|++.|.+. +.++|+|+|| +.+.+.......... ..|.
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~~~~--~~~~~~~~NV~gt~~ll~la~~~-~~~~~~~iST-a~v~~~~~~~~~~~~~~~~~~ 156 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVNFNA--PYSELRAVNVDGTRNLLRLAAQG-KRKRFHYIST-AYVAGSRPGTIEEKVYPEEED 156 (249)
T ss_dssp HHHHHHH--EEEE--SS-SBS---S--EEHHHHHHHHHHHHHHHTSS-S---EEEEEE-GGGTTS-TTT--SSS-HHH--
T ss_pred hhccccccceeeecchhhhhcc--cchhhhhhHHHHHHHHHHHHHhc-cCcceEEecc-ccccCCCCCcccccccccccc
Confidence 6667778999999999987754 34478899999999999999976 5569999999 445543321111111 1111
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC---CcchHHHHHHHH-hCC-CCC---C
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLI-KGA-QTY---P 224 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~-~~~-~~~---~ 224 (328)
.. .......+.|..||+.+|.+++.++++.|++++|+||+.|+|...... ......++.... .+. |.. +
T Consensus 157 ~~---~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 233 (249)
T PF07993_consen 157 DL---DPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDP 233 (249)
T ss_dssp EE---E--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB--
T ss_pred cc---hhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCC
Confidence 11 111223467999999999999999988899999999999999432222 232344444433 333 322 3
Q ss_pred CCCccceeHHHHHHHH
Q 020266 225 NVTFGWVNVKDVANAH 240 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~ 240 (328)
+...++++||.+|++|
T Consensus 234 ~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 234 DARLDLVPVDYVARAI 249 (249)
T ss_dssp -TT--EEEHHHHHHHH
T ss_pred CceEeEECHHHHHhhC
Confidence 4569999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=232.41 Aligned_cols=264 Identities=19% Similarity=0.198 Sum_probs=179.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC---eEEEEecCCCChhhhhhhhhc-------------cC------CCCcEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY---TVKASVRDPNDPKKTRHLLAL-------------DG------ASERLQL 64 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~-------------~~------~~~~~~~ 64 (328)
+++|+|||||||||||++|+++|++.+. +|+++.|..+......++... .+ ...++..
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 4689999999999999999999998753 689999976544333222100 01 1357999
Q ss_pred EEccCCCcC------chHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhcc
Q 020266 65 FKANLLEEG------SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 65 ~~~Dl~~~~------~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~ 138 (328)
+.||++++. +.+.+.+++|+|||+|+..... .+.+...++|+.|+.+++++|++..+.++|||+||.+ +||
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~--~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTay-VyG 273 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFD--ERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAY-VNG 273 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccc--cCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCce-eec
Confidence 999999873 5566677899999999986643 3455889999999999999998865678899999976 444
Q ss_pred CCCCCCCCccccCCC-----------------CCC-------------------------------ccccccCCchhhhh
Q 020266 139 TGKPRTPDVVVDETW-----------------FSD-------------------------------PEVCKQSELWYPLS 170 (328)
Q Consensus 139 ~~~~~~~~~~~~E~~-----------------~~~-------------------------------~~~~~~~~~~Y~~s 170 (328)
.......+.+++..+ +.+ +......++.|..+
T Consensus 274 ~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~T 353 (605)
T PLN02503 274 QRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFT 353 (605)
T ss_pred CCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHH
Confidence 331111111111000 000 00112345889999
Q ss_pred hHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC------cchHHHHHHHHhCC-C-C--CCCCCccceeHHHHHHHH
Q 020266 171 KTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL------NTSAAAVLSLIKGA-Q-T--YPNVTFGWVNVKDVANAH 240 (328)
Q Consensus 171 K~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------~~~~~~~~~~~~~~-~-~--~~~~~~~~v~v~D~a~~~ 240 (328)
|.+||.+++.+. .+++++|+||+.|.+....|.- ......+....+|. + . -++...|+|+||.++.++
T Consensus 354 K~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna~ 431 (605)
T PLN02503 354 KAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNAT 431 (605)
T ss_pred HHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHHH
Confidence 999999999765 3799999999999542211110 01111222222333 2 1 246788999999999999
Q ss_pred HHhhcC-C----CCCCcEEEe-c--CccCHHHHHHHHHHhCCC
Q 020266 241 IQAFEV-P----SANGRYCLV-E--RVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 241 ~~~~~~-~----~~~g~~~~~-~--~~~~~~el~~~i~~~~~~ 275 (328)
+.++.. . ....+||++ + ++++++++.+.+.+.+..
T Consensus 432 i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 432 LAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred HHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 998431 1 123499996 4 789999999999987653
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=227.22 Aligned_cols=266 Identities=15% Similarity=0.184 Sum_probs=182.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 85 (328)
+.|+||||||+||||++|+++|.++|++|.. ..+|++|++.+...++ ++|+|
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~--------------------------~~~~l~d~~~v~~~i~~~~pd~V 432 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEY--------------------------GKGRLEDRSSLLADIRNVKPTHV 432 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEe--------------------------eccccccHHHHHHHHHhhCCCEE
Confidence 4578999999999999999999999988731 1145667676766665 68999
Q ss_pred EEccCCCCC----CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCC-CCCCCCccccCCCCCCcccc
Q 020266 86 CHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTG-KPRTPDVVVDETWFSDPEVC 160 (328)
Q Consensus 86 ih~a~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~-~~~~~~~~~~E~~~~~~~~~ 160 (328)
||||+.... .........+++|+.++.+|+++|++. +++ +|++||.+++.+.. .+.....+++|++++.+
T Consensus 433 ih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~-g~~-~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~--- 507 (668)
T PLN02260 433 FNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN-GLL-MMNFATGCIFEYDAKHPEGSGIGFKEEDKPNF--- 507 (668)
T ss_pred EECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc-CCe-EEEEcccceecCCcccccccCCCCCcCCCCCC---
Confidence 999997532 112234588899999999999999998 774 78888865443211 11111246788765544
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHH
Q 020266 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAH 240 (328)
Q Consensus 161 ~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~ 240 (328)
+.+.|+.||+++|.+++.+. +..++|+..+||+..... ..++..+++...... -..+..+++|++.++
T Consensus 508 --~~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~~----~nfv~~~~~~~~~~~-vp~~~~~~~~~~~~~ 575 (668)
T PLN02260 508 --TGSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSNP----RNFITKISRYNKVVN-IPNSMTVLDELLPIS 575 (668)
T ss_pred --CCChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCCc----cHHHHHHhccceeec-cCCCceehhhHHHHH
Confidence 23679999999999998864 356677777776432211 134444444442111 123567889999998
Q ss_pred HHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCC-CC---CCCCC-CC--CCCCCCCceecchHHH-HhcCCccccHHH
Q 020266 241 IQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYP-AF---QLPEK-CA--DDKPHVPTYQVLKEKV-KNLGIEFIPVEV 311 (328)
Q Consensus 241 ~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~-~~---~~~~~-~~--~~~~~~~~~~~~~~k~-~~lg~~~~~~~~ 311 (328)
+.+++. ..+|+||+++ +.+|+.|+++.+.+.++ .. ++... .. ...+. +.+.+|++|+ +.+|+ .+++++
T Consensus 576 ~~l~~~-~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~r-p~~~l~~~k~~~~~~~-~~~~~~ 652 (668)
T PLN02260 576 IEMAKR-NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPR-SNNEMDASKLKKEFPE-LLSIKE 652 (668)
T ss_pred HHHHHh-CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCC-ccccccHHHHHHhCcc-ccchHH
Confidence 888874 3468999986 77999999999999774 21 11111 11 11111 2237999999 66888 889999
Q ss_pred HHHHHHHH
Q 020266 312 SLKETIES 319 (328)
Q Consensus 312 ~l~~~~~~ 319 (328)
+|++++..
T Consensus 653 ~l~~~~~~ 660 (668)
T PLN02260 653 SLIKYVFE 660 (668)
T ss_pred HHHHHHhh
Confidence 99998753
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=203.28 Aligned_cols=255 Identities=22% Similarity=0.219 Sum_probs=174.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccC--------CCCcEEEEEccCCCc------Cc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDG--------ASERLQLFKANLLEE------GS 74 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~------~~ 74 (328)
++||+||||||+|++|+++|+.+- .+|+++.|-.+....+.++.+... ...+++.+.||+..+ ..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 579999999999999999999874 599999998876666555443221 246899999999855 35
Q ss_pred hHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 75 FDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 75 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
+.++.+.+|.|||+||.+.+. .++.+....|+.||..+++.|... +.|.|+|+||+++ +............+|+.+
T Consensus 81 ~~~La~~vD~I~H~gA~Vn~v--~pYs~L~~~NVlGT~evlrLa~~g-k~Kp~~yVSsisv-~~~~~~~~~~~~~~~~~~ 156 (382)
T COG3320 81 WQELAENVDLIIHNAALVNHV--FPYSELRGANVLGTAEVLRLAATG-KPKPLHYVSSISV-GETEYYSNFTVDFDEISP 156 (382)
T ss_pred HHHHhhhcceEEecchhhccc--CcHHHhcCcchHhHHHHHHHHhcC-CCceeEEEeeeee-ccccccCCCccccccccc
Confidence 778888999999999987764 445588899999999999999986 7788999999874 432222222222233222
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC---CCCC--CCCcc
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA---QTYP--NVTFG 229 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~ 229 (328)
.... .....+.|+.||+++|.+++++... |++++|+|||.|.|....+..+. ..++.+++.+- -.+| ....+
T Consensus 157 ~~~~-~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~-~D~~~Rlv~~~~~lg~~P~~~~~~~ 233 (382)
T COG3320 157 TRNV-GQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNT-RDFLTRLVLGLLQLGIAPDSEYSLD 233 (382)
T ss_pred cccc-cCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCcccc-chHHHHHHHHHHHhCCCCCcccchh
Confidence 2211 1223467999999999999999887 99999999999999865333321 23333433332 1223 23344
Q ss_pred ceeHHHHHHHHHHhhc-----------CCCC-CCcEEE--ecCccCHHHHHHHHHH
Q 020266 230 WVNVKDVANAHIQAFE-----------VPSA-NGRYCL--VERVSHYSEIVNIIRE 271 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~-----------~~~~-~g~~~~--~~~~~~~~el~~~i~~ 271 (328)
.+.++++++++..... ++.. .+.|.. .+..+++.++.+.+.+
T Consensus 234 ~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 234 MLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred hCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence 5554444444333322 2111 124442 2578899999988877
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=216.26 Aligned_cols=233 Identities=17% Similarity=0.155 Sum_probs=165.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+||||||+||||++|+++|+++|++|++++|..... ...+++++.+|++++. +.+++.++|+|||+|
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~-----------~~~~ve~v~~Dl~d~~-l~~al~~~D~VIHLA 68 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA-----------LDPRVDYVCASLRNPV-LQELAGEADAVIHLA 68 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc-----------ccCCceEEEccCCCHH-HHHHhcCCCEEEEcC
Confidence 4799999999999999999999999999999864321 1236889999999984 777888999999999
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhh
Q 020266 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (328)
Q Consensus 90 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 169 (328)
+.... ...++|+.++.|++++|++. ++ ++||+||. +|.+ ..|.
T Consensus 69 a~~~~-------~~~~vNv~Gt~nLleAA~~~-Gv-RiV~~SS~---~G~~------------------------~~~~- 111 (699)
T PRK12320 69 PVDTS-------APGGVGITGLAHVANAAARA-GA-RLLFVSQA---AGRP------------------------ELYR- 111 (699)
T ss_pred ccCcc-------chhhHHHHHHHHHHHHHHHc-CC-eEEEEECC---CCCC------------------------cccc-
Confidence 86321 12258999999999999998 66 79999985 2211 0022
Q ss_pred hhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC-cchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC
Q 020266 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL-NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 170 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
.+|.++.. ++++++++|++++|||+..... ..+..++.....+ +...++|++|++++++.++..+
T Consensus 112 ---~aE~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~------~pI~vIyVdDvv~alv~al~~~- 177 (699)
T PRK12320 112 ---QAETLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSA------RPIRVLHLDDLVRFLVLALNTD- 177 (699)
T ss_pred ---HHHHHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcC------CceEEEEHHHHHHHHHHHHhCC-
Confidence 35666543 4689999999999999654321 2233333333332 3345799999999999999864
Q ss_pred CCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-HhcCCc-cccHH
Q 020266 249 ANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVE 310 (328)
Q Consensus 249 ~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~ 310 (328)
..|+||+++ +.+|+.|+++.+....+..... ..........+.+.. ..++|. ..+++
T Consensus 178 ~~GiyNIG~~~~~Si~el~~~i~~~~p~~~~~-----~~~~~~~~~pdi~~a~~~~~w~~~~~~~ 237 (699)
T PRK12320 178 RNGVVDLATPDTTNVVTAWRLLRSVDPHLRTR-----RVRSWEQLIPEVDIAAVQEDWNFEFGWQ 237 (699)
T ss_pred CCCEEEEeCCCeeEHHHHHHHHHHhCCCcccc-----ccccHHHhCCCCchhhhhcCCCCcchHH
Confidence 356999986 8999999999998774422111 011112344566666 667887 55543
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=200.28 Aligned_cols=233 Identities=18% Similarity=0.178 Sum_probs=167.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
.|++|||||+||||++++++|+++|++|+++.|+++....+... ...++.++.+|++|++++.++++ +
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR-----YGDRLWVLQLDVTDSAAVRAVVDRAFAALGR 76 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-----ccCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999999999986544332221 12468899999999988777654 5
Q ss_pred ccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 82 ~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
+|+||||||..... ..+.+...+++|+.++.++++++ ++. +.+++|++||.++..+.+
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~------------ 143 (276)
T PRK06482 77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQ-GGGRIVQVSSEGGQIAYP------------ 143 (276)
T ss_pred CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcCcccccCCC------------
Confidence 79999999874321 12234467889999999999997 343 567999999965432110
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcc---cCCCCCCCC------cchHHHHHHHHhCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMV---IGPLLQPTL------NTSAAAVLSLIKGA 220 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v---~G~~~~~~~------~~~~~~~~~~~~~~ 220 (328)
..+.|+.||.+.|.+++.++.+ +|++++++|||.+ ||++..... ......+.+....+
T Consensus 144 ----------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (276)
T PRK06482 144 ----------GFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADG 213 (276)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhc
Confidence 1255999999999999998876 5999999999988 555432110 11112233333332
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCC
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYP 274 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~ 274 (328)
+ ..-+.+++|++++++.++..+.....||+++ +..++.|+++.+.+.+.
T Consensus 214 ~-----~~~~~d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK06482 214 S-----FAIPGDPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAALE 263 (276)
T ss_pred c-----CCCCCCHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHHH
Confidence 1 1114689999999999998765555898875 67778877776666543
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=197.02 Aligned_cols=223 Identities=18% Similarity=0.157 Sum_probs=159.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|++|||||+|+||++++++|+++|++|++++|+++........+... ..++.++++|++|++.+.++++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA--GGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc--CceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999876655544433222 3467889999999998877665
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHH----HHHHHHHH-hcCCCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKG----TLNVLNSC-AKFPSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~----~~~l~~~~-~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|+||||||.... ...+.+...+++|+.+ +.++++++ +.. +.++||++||.+..++.+
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss~~~~~~~~-------- 152 (262)
T PRK13394 82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGSVHSHEASP-------- 152 (262)
T ss_pred cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcchhhcCCCC--------
Confidence 48999999987422 1223344667899999 55566666 444 678999999975443211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcc--------hHHHHHHHH
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNT--------SAAAVLSLI 217 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~--------~~~~~~~~~ 217 (328)
..+.|+.+|...+.+++.++.+ .+++++++||+.+++|........ ......+.+
T Consensus 153 --------------~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (262)
T PRK13394 153 --------------LKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVM 218 (262)
T ss_pred --------------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHH
Confidence 1244999999999999988876 489999999999999853221100 111222222
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCC--CC-cEEEec
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~ 257 (328)
.+ +...++|++++|++++++.++..+.. .| .|++.+
T Consensus 219 ~~----~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~ 257 (262)
T PRK13394 219 LG----KTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSH 257 (262)
T ss_pred hc----CCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCC
Confidence 22 23457899999999999999986432 35 555554
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=193.82 Aligned_cols=229 Identities=17% Similarity=0.128 Sum_probs=161.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
|++|+++||||+|+||+++++.|+++|++|++++|+.+....+...........++.++.+|++|++++.+ ++
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 35678999999999999999999999999999999876665544433332223578999999999988765 32
Q ss_pred -CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+||||||..... ..+.+.+.+++|+.++.++++++ ++. +.+++|++||.+..++.+
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~vsS~~~~~~~~---------- 148 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQ-KSGKIINISSISGRVGFP---------- 148 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEECcccccCCCC----------
Confidence 579999999864321 12234466789999999998886 343 567899999976555321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHH---hcCccEEEEcCCcccCCCCCCCC----------cchHHHHHHHH
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK---EKSIDLVTINPAMVIGPLLQPTL----------NTSAAAVLSLI 217 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~----------~~~~~~~~~~~ 217 (328)
....|+.+|...+.+++.++. .+|++++++|||.+.++...... ......+....
T Consensus 149 ------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (280)
T PRK06914 149 ------------GLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQ 216 (280)
T ss_pred ------------CCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHH
Confidence 124599999999999998874 45899999999999988432111 00111111111
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCH
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHY 262 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~ 262 (328)
... +.....+++++|+|++++.++.++.....|++++ ..+++
T Consensus 217 ~~~---~~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (280)
T PRK06914 217 KHI---NSGSDTFGNPIDVANLIVEIAESKRPKLRYPIGKGVKLMI 259 (280)
T ss_pred HHH---hhhhhccCCHHHHHHHHHHHHcCCCCCcccccCCchHHHH
Confidence 110 1123457899999999999999876655777763 44443
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=224.00 Aligned_cols=258 Identities=22% Similarity=0.256 Sum_probs=180.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC----CeEEEEecCCCChhhhhhhhhcc--------CCCCcEEEEEccCCCc----
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG----YTVKASVRDPNDPKKTRHLLALD--------GASERLQLFKANLLEE---- 72 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~~~~Dl~~~---- 72 (328)
.++|+|||||||||+++++.|+++| ++|+++.|.........++.... ....+++++.+|++++
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 5789999999999999999999887 88999999765544333221110 0123789999999865
Q ss_pred --CchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCC-------
Q 020266 73 --GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPR------- 143 (328)
Q Consensus 73 --~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~------- 143 (328)
+.+..+..++|+|||+|+.+... .+.......|+.|+.+++++|.+. ++++|+|+||.++++......
T Consensus 1051 ~~~~~~~l~~~~d~iiH~Aa~~~~~--~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~vSS~~v~~~~~~~~~~~~~~~ 1127 (1389)
T TIGR03443 1051 SDEKWSDLTNEVDVIIHNGALVHWV--YPYSKLRDANVIGTINVLNLCAEG-KAKQFSFVSSTSALDTEYYVNLSDELVQ 1127 (1389)
T ss_pred CHHHHHHHHhcCCEEEECCcEecCc--cCHHHHHHhHHHHHHHHHHHHHhC-CCceEEEEeCeeecCcccccchhhhhhh
Confidence 34566667899999999986542 334455568999999999999987 778999999986553211000
Q ss_pred CCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC---
Q 020266 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--- 220 (328)
Q Consensus 144 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--- 220 (328)
.....+.|+.+..+. .....+.|+.||+.+|.++..++. .|++++++||+.|||+......+ ...++..++.+.
T Consensus 1128 ~~~~~~~e~~~~~~~-~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~-~~~~~~~~~~~~~~~ 1204 (1389)
T TIGR03443 1128 AGGAGIPESDDLMGS-SKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATN-TDDFLLRMLKGCIQL 1204 (1389)
T ss_pred ccCCCCCcccccccc-cccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCC-chhHHHHHHHHHHHh
Confidence 011123444322211 111235699999999999998766 49999999999999996544321 223333333222
Q ss_pred CCC--CCCCccceeHHHHHHHHHHhhcCCCC--C-CcEEEec-CccCHHHHHHHHHHh
Q 020266 221 QTY--PNVTFGWVNVKDVANAHIQAFEVPSA--N-GRYCLVE-RVSHYSEIVNIIREL 272 (328)
Q Consensus 221 ~~~--~~~~~~~v~v~D~a~~~~~~~~~~~~--~-g~~~~~~-~~~~~~el~~~i~~~ 272 (328)
..+ ..+.++|++++|++++++.++.++.. . .+||+++ ..+++.++++.+.+.
T Consensus 1205 ~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443 1205 GLIPNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY 1262 (1389)
T ss_pred CCcCCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh
Confidence 122 34568999999999999999876532 2 2788876 688999999999764
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=194.74 Aligned_cols=203 Identities=15% Similarity=0.221 Sum_probs=150.0
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh------CC-cc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV------DG-CD 83 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~------~~-~d 83 (328)
+|+||||||++|++++++|+++|++|+++.|++++... .+++.+.+|++|++.+.+++ ++ +|
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~-----------~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d 69 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG-----------PNEKHVKFDWLDEDTWDNPFSSDDGMEPEIS 69 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC-----------CCCccccccCCCHHHHHHHHhcccCcCCcee
Confidence 48999999999999999999999999999998765421 35677889999999999988 57 99
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
.|+|+++.... ......+++++|++. +++|||++||.....+
T Consensus 70 ~v~~~~~~~~~------------~~~~~~~~i~aa~~~-gv~~~V~~Ss~~~~~~------------------------- 111 (285)
T TIGR03649 70 AVYLVAPPIPD------------LAPPMIKFIDFARSK-GVRRFVLLSASIIEKG------------------------- 111 (285)
T ss_pred EEEEeCCCCCC------------hhHHHHHHHHHHHHc-CCCEEEEeeccccCCC-------------------------
Confidence 99999864221 123456889999998 8999999999543221
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC---CCCCCCccceeHHHHHHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ---TYPNVTFGWVNVKDVANAH 240 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~D~a~~~ 240 (328)
+..+...|..+++. .+++++++||+.+++...... ....+..... ..++..++|++++|+|+++
T Consensus 112 ----~~~~~~~~~~l~~~---~gi~~tilRp~~f~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~v~~~Dva~~~ 178 (285)
T TIGR03649 112 ----GPAMGQVHAHLDSL---GGVEYTVLRPTWFMENFSEEF------HVEAIRKENKIYSATGDGKIPFVSADDIARVA 178 (285)
T ss_pred ----CchHHHHHHHHHhc---cCCCEEEEeccHHhhhhcccc------cccccccCCeEEecCCCCccCcccHHHHHHHH
Confidence 00112234433221 489999999998886531110 0111112221 2257788999999999999
Q ss_pred HHhhcCCCCC-CcEEEec-CccCHHHHHHHHHHhCCC
Q 020266 241 IQAFEVPSAN-GRYCLVE-RVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 241 ~~~~~~~~~~-g~~~~~~-~~~~~~el~~~i~~~~~~ 275 (328)
..++.++... +.|++.+ +.+|++|+++.+.+.+|.
T Consensus 179 ~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~ 215 (285)
T TIGR03649 179 YRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGR 215 (285)
T ss_pred HHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhCC
Confidence 9999876544 4898876 899999999999999985
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=189.45 Aligned_cols=233 Identities=16% Similarity=0.083 Sum_probs=167.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
++|+|+||||+|+||++++++|+++|++|++++|++++...+.... ..++.++++|++|++++.++++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999866544332221 2467888999999988776654
Q ss_pred CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|+||||||.... ...+.+.+.+++|+.++.++++++ ++. +.+++|++||.+++.+.+
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~vsS~~~~~~~~----------- 144 (275)
T PRK08263 77 RLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQ-RSGHIIQISSIGGISAFP----------- 144 (275)
T ss_pred CCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEcChhhcCCCC-----------
Confidence 57999999997432 122345678899999998888876 344 567899999976554211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCc---c--hHHHHHHHHhCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN---T--SAAAVLSLIKGAQTY 223 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~---~--~~~~~~~~~~~~~~~ 223 (328)
..+.|+.+|.+.+.+.+.++.+ +|++++++|||.+.++....... . ....+.......
T Consensus 145 -----------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--- 210 (275)
T PRK08263 145 -----------MSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQ--- 210 (275)
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHH---
Confidence 1245999999999999998775 68999999999998764321110 0 001111111100
Q ss_pred CCCCccc-eeHHHHHHHHHHhhcCCCCCCcEEEe-c-CccCHHHHHHHHHHh
Q 020266 224 PNVTFGW-VNVKDVANAHIQAFEVPSANGRYCLV-E-RVSHYSEIVNIIREL 272 (328)
Q Consensus 224 ~~~~~~~-v~v~D~a~~~~~~~~~~~~~g~~~~~-~-~~~~~~el~~~i~~~ 272 (328)
.....+ ++++|++++++.+++.+...+.|+.. + ..+++.++.+.+.+.
T Consensus 211 -~~~~~~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 211 -WSERSVDGDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATW 261 (275)
T ss_pred -HHhccCCCCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHH
Confidence 112235 89999999999999987666766554 3 578888888888774
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=183.79 Aligned_cols=232 Identities=22% Similarity=0.224 Sum_probs=179.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
+.++-.+-|.|||||+|+.++.+|.+.|-+|++..|..+.... .++..+.-.++-++..|+.|+++++++++...+|
T Consensus 58 S~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r---~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVV 134 (391)
T KOG2865|consen 58 SVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPR---HLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVV 134 (391)
T ss_pred cccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchh---heeecccccceeeeccCCCCHHHHHHHHHhCcEE
Confidence 3446678899999999999999999999999999995444322 2223334468999999999999999999999999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
||+.|-- ....++ .+.++|+.++..|...|++. ++.||||+|+.++-. . ..+
T Consensus 135 INLIGrd--~eTknf-~f~Dvn~~~aerlAricke~-GVerfIhvS~Lganv------~------------------s~S 186 (391)
T KOG2865|consen 135 INLIGRD--YETKNF-SFEDVNVHIAERLARICKEA-GVERFIHVSCLGANV------K------------------SPS 186 (391)
T ss_pred EEeeccc--cccCCc-ccccccchHHHHHHHHHHhh-Chhheeehhhccccc------c------------------ChH
Confidence 9999852 223333 77889999999999999998 999999999975211 0 124
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC---CCCccceeHHHHHHHHHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP---NVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~D~a~~~~~ 242 (328)
-|-.+|.++|..++.+. -..+|+||+.+||..+. ..+.+..+.++ ..-.|+++ ......|+|-|+|.+|+.
T Consensus 187 r~LrsK~~gE~aVrdaf----PeAtIirPa~iyG~eDr-fln~ya~~~rk-~~~~pL~~~GekT~K~PVyV~DVaa~Ivn 260 (391)
T KOG2865|consen 187 RMLRSKAAGEEAVRDAF----PEATIIRPADIYGTEDR-FLNYYASFWRK-FGFLPLIGKGEKTVKQPVYVVDVAAAIVN 260 (391)
T ss_pred HHHHhhhhhHHHHHhhC----Ccceeechhhhcccchh-HHHHHHHHHHh-cCceeeecCCcceeeccEEEehHHHHHHH
Confidence 59999999999998864 46999999999998643 22222222222 11125553 345678999999999999
Q ss_pred hhcCCCCCC-cEEEec-CccCHHHHHHHHHHhCC
Q 020266 243 AFEVPSANG-RYCLVE-RVSHYSEIVNIIRELYP 274 (328)
Q Consensus 243 ~~~~~~~~g-~~~~~~-~~~~~~el~~~i~~~~~ 274 (328)
|+..|...| +|..++ ..+++.|+++.+.+...
T Consensus 261 AvkDp~s~Gktye~vGP~~yql~eLvd~my~~~~ 294 (391)
T KOG2865|consen 261 AVKDPDSMGKTYEFVGPDRYQLSELVDIMYDMAR 294 (391)
T ss_pred hccCccccCceeeecCCchhhHHHHHHHHHHHHh
Confidence 999998877 998887 89999999998877653
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=187.61 Aligned_cols=224 Identities=13% Similarity=0.082 Sum_probs=156.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||++++++|+++|++|+++.|+.............. ..++.++.+|+++++++.++++
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRAD--GGEAVAFPLDVTDPDSVKSFVAQAEEA 84 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999999998765433322222211 2468889999999998877665
Q ss_pred --CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+||..... ..+.+...+++|+.++.++++++.+. .+.++||++||...+.+.+
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~---------- 154 (274)
T PRK07775 85 LGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRP---------- 154 (274)
T ss_pred cCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC----------
Confidence 579999999863321 12233456789999999999887532 1446899999975443110
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCC-CCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPL-LQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
..+.|+.+|.+.|.+++.++.+. |++++++|||.+.++. ...........+....... +..
T Consensus 155 ------------~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~---~~~ 219 (274)
T PRK07775 155 ------------HMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWG---QAR 219 (274)
T ss_pred ------------CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhc---ccc
Confidence 12459999999999999998764 8999999999886652 2111111111222211111 223
Q ss_pred CccceeHHHHHHHHHHhhcCCCCCCcEEEe
Q 020266 227 TFGWVNVKDVANAHIQAFEVPSANGRYCLV 256 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~ 256 (328)
...+++++|+|++++.++.++....+||+.
T Consensus 220 ~~~~~~~~dva~a~~~~~~~~~~~~~~~~~ 249 (274)
T PRK07775 220 HDYFLRASDLARAITFVAETPRGAHVVNME 249 (274)
T ss_pred cccccCHHHHHHHHHHHhcCCCCCCeeEEe
Confidence 456999999999999999876433477775
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=184.70 Aligned_cols=222 Identities=18% Similarity=0.142 Sum_probs=159.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||.+++++|+++|++|++++|+.++.......+.. ...++.++.+|+.|++++.++++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEA--AGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999986554433222221 22458899999999988887775
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhh-ccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAV-LNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~-~~~~~~~~~~~~~~ 150 (328)
.+|+|||+++.... ...+.+...+++|+.++.++++++.+. .+.++||++||.... .+.
T Consensus 82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~----------- 150 (251)
T PRK12826 82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGY----------- 150 (251)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCC-----------
Confidence 58999999987442 222234567889999999999887531 145789999997544 110
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
.....|+.+|.+++.+++.++.+ .+++++++||+.++||........ .+........+ .
T Consensus 151 -----------~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~--~~~~~~~~~~~-----~ 212 (251)
T PRK12826 151 -----------PGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDA--QWAEAIAAAIP-----L 212 (251)
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCch--HHHHHHHhcCC-----C
Confidence 01245999999999999998765 489999999999999965432211 11122222222 1
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--CC-cEEEecCc
Q 020266 228 FGWVNVKDVANAHIQAFEVPSA--NG-RYCLVERV 259 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~~~ 259 (328)
..+++++|++.++..++..... .| .|++.++.
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 213 GRLGEPEDIAAAVLFLASDEARYITGQTLPVDGGA 247 (251)
T ss_pred CCCcCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 2589999999999998875432 35 66776543
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=184.28 Aligned_cols=220 Identities=16% Similarity=0.154 Sum_probs=151.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
++++||||||+||||++++++|+++|++|++++|+..+ ...+...+... ....+.++.+|++|.+.+..+++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNAL-RPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh-cCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999986433 22222221111 12358889999999998887765
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.. ....++++++.....
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 148 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAER--------------- 148 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcC---------------
Confidence 47999999986321 1122345678899999999999987531 224566666532211
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
+.. +.+.|+.+|..+|.+++.++.++ +++++++||+.++||...... ..........+.+ ...+
T Consensus 149 -~~~------~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~ 214 (249)
T PRK09135 149 -PLK------GYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSF--DEEARQAILARTP-----LKRI 214 (249)
T ss_pred -CCC------CchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccC--CHHHHHHHHhcCC-----cCCC
Confidence 111 23569999999999999998875 699999999999999754322 1122222333222 1223
Q ss_pred eeHHHHHHHHHHhhcCC-CCCC-cEEEec
Q 020266 231 VNVKDVANAHIQAFEVP-SANG-RYCLVE 257 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~-~~~g-~~~~~~ 257 (328)
.+++|+++++.+++... ...| +||+.+
T Consensus 215 ~~~~d~a~~~~~~~~~~~~~~g~~~~i~~ 243 (249)
T PRK09135 215 GTPEDIAEAVRFLLADASFITGQILAVDG 243 (249)
T ss_pred cCHHHHHHHHHHHcCccccccCcEEEECC
Confidence 46899999997666543 2345 788875
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=185.62 Aligned_cols=228 Identities=22% Similarity=0.175 Sum_probs=157.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
++++|+++||||+||||++++++|++.|++|+++.|+..+ ...+...+.. ...++.++.+|+++++++.++++
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA--AGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3557899999999999999999999999999999987542 2222222221 12467889999999998877665
Q ss_pred ---CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020266 81 ---GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (328)
Q Consensus 81 ---~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 156 (328)
++|+|||+|+....... .+...+++|+.++.++++++.+.. ..+++|++||....+... .+..+
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~-~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~---------~~~~~-- 148 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGM-DEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT---------VKTMP-- 148 (248)
T ss_pred hCCCCcEEEECCCCCCCCCC-CcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc---------ccCCc--
Confidence 58999999986432222 234678899999999999998752 235899999954332100 01111
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCc-chHHHHHHHHhCCCCCCCCCcccee
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQTYPNVTFGWVN 232 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (328)
..+.|+.||.++|.+++.++.+ .++++++++|+.+-++....... .....+.. . ......+++
T Consensus 149 ------~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~ 215 (248)
T PRK07806 149 ------EYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRLNPGAIEA----R---REAAGKLYT 215 (248)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccCCHHHHHH----H---HhhhcccCC
Confidence 1245999999999999998765 48999999999877763211000 00011100 0 001236999
Q ss_pred HHHHHHHHHHhhcCCCCCC-cEEEecCcc
Q 020266 233 VKDVANAHIQAFEVPSANG-RYCLVERVS 260 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~~~g-~~~~~~~~~ 260 (328)
++|+|++++.++......| .|++++...
T Consensus 216 ~~dva~~~~~l~~~~~~~g~~~~i~~~~~ 244 (248)
T PRK07806 216 VSEFAAEVARAVTAPVPSGHIEYVGGADY 244 (248)
T ss_pred HHHHHHHHHHHhhccccCccEEEecCccc
Confidence 9999999999999765566 788876543
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=186.99 Aligned_cols=221 Identities=16% Similarity=0.092 Sum_probs=154.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
++|+|+||||+|+||+++++.|+++|++|++++|+.++...+... ...++..+.+|++|++++.++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 77 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL-----HPDRALARLLDVTDFDAIDAVVADAEATFG 77 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh-----cCCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999986554332221 12468889999999998877665
Q ss_pred CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 ~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|+||||||..... ..+.+...+++|+.|+.++++++.+. .+.+++|++||.++..+.+
T Consensus 78 ~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~------------ 145 (277)
T PRK06180 78 PIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMP------------ 145 (277)
T ss_pred CCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCC------------
Confidence 579999999973221 12233466899999999999986432 1456899999976554211
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC----cchHHH---HHHHHhCCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL----NTSAAA---VLSLIKGAQT 222 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~----~~~~~~---~~~~~~~~~~ 222 (328)
+...|+.+|.+.|.+++.++.+ +|++++++|||.+.++...... ...... +........
T Consensus 146 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 214 (277)
T PRK06180 146 ----------GIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQARE- 214 (277)
T ss_pred ----------CcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHH-
Confidence 1245999999999999998875 4899999999999876432111 111111 111110000
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCCCCcEEEec
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE 257 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~ 257 (328)
......+.+++|+|++++.++.++.....|.++.
T Consensus 215 -~~~~~~~~~~~dva~~~~~~l~~~~~~~~~~~g~ 248 (277)
T PRK06180 215 -AKSGKQPGDPAKAAQAILAAVESDEPPLHLLLGS 248 (277)
T ss_pred -hhccCCCCCHHHHHHHHHHHHcCCCCCeeEeccH
Confidence 0112346789999999999999765555565553
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=185.58 Aligned_cols=240 Identities=19% Similarity=0.137 Sum_probs=168.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
|++|+++||||+|+||+++++.|+++|++|++++|+.++.......+.......++.++.+|++|++++.++++
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56799999999999999999999999999999999866544433322221112468889999999988877765
Q ss_pred -CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+...+.+
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 154 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHR---------- 154 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCCC----------
Confidence 68999999985321 112234467889999999999877653 1335899999975432100
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
..+.|+.+|.+.|.+++.++.+. +++++++||+.+.++....... ............ ..
T Consensus 155 ------------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~~~-----~~ 216 (276)
T PRK05875 155 ------------WFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITE-SPELSADYRACT-----PL 216 (276)
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccccc-CHHHHHHHHcCC-----CC
Confidence 12459999999999999998765 6999999999998775322111 111112222211 12
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--CC-cEEEec-Ccc----CHHHHHHHHHHhCC
Q 020266 228 FGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE-RVS----HYSEIVNIIRELYP 274 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~-~~~----~~~el~~~i~~~~~ 274 (328)
..+++++|+++++.+++.++.. .| .+++.+ ..+ ++.|+++.+....+
T Consensus 217 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 217 PRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 3477899999999999987543 35 677764 444 78888887765543
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=182.70 Aligned_cols=219 Identities=19% Similarity=0.171 Sum_probs=156.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh-hhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+||||||||+||++++++|+++|++|+++.|+..+.. .+...... ...++.++.+|++|++++.++++
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEA--LGRRAQAVQADVTDKAALEAAVAAAVE 80 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh--cCCceEEEECCcCCHHHHHHHHHHHHH
Confidence 455789999999999999999999999999988777654322 22222211 13468899999999998877664
Q ss_pred ---CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+|||+||..... ..+.+...+++|+.++.++++.+. +. +.+++|++||.+.+++..
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~i~~SS~~~~~~~~-------- 151 (249)
T PRK12825 81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQ-RGGRIVNISSVAGLPGWP-------- 151 (249)
T ss_pred HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEECccccCCCCC--------
Confidence 579999999963321 222345678899999999999874 33 567999999976654211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|...+.+++.++.+ .+++++++||+.++|+....... ...... .+. .
T Consensus 152 --------------~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~--~~~~~~----~~~--~ 209 (249)
T PRK12825 152 --------------GRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIE--EAREAK----DAE--T 209 (249)
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccc--hhHHhh----hcc--C
Confidence 1245999999999999888775 58999999999999986543211 111111 111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....+++++|+++++.+++.+.. ..| .|++.+
T Consensus 210 ~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~ 244 (249)
T PRK12825 210 PLGRSGTPEDIARAVAFLCSDASDYITGQVIEVTG 244 (249)
T ss_pred CCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCC
Confidence 12338999999999999997653 245 677765
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-24 Score=182.49 Aligned_cols=220 Identities=16% Similarity=0.159 Sum_probs=154.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-------CC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-------DG 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~ 81 (328)
+|++|||||+|+||++++++|+++|++|++++|+.+....+....... ..++.++.+|+.|++++.+++ .+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA--GGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999999999999866554444333221 246889999999998665544 46
Q ss_pred ccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 82 ~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
+|+|||+|+..... ....+...++.|+.++..+++++. +. +.+++|++||.+.+.+.+
T Consensus 79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~~v~~ss~~~~~~~~------------ 145 (255)
T TIGR01963 79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQ-GWGRIINIASAHGLVASP------------ 145 (255)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEEcchhhcCCCC------------
Confidence 89999999864321 112234567789999888888774 44 567999999975544211
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCc--------chHHHHHHHHhCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLIKGAQ 221 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~--------~~~~~~~~~~~~~~ 221 (328)
....|+.+|.+.+.+++.++.+ .+++++++||+.+++|....... .....+.....
T Consensus 146 ----------~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 212 (255)
T TIGR01963 146 ----------FKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVML--- 212 (255)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHH---
Confidence 1244999999999999888765 38999999999999985211000 00000111111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.+.+.+++++++|+|++++.++..+. ..| .|++.+
T Consensus 213 -~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~ 250 (255)
T TIGR01963 213 -PGQPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDG 250 (255)
T ss_pred -ccCccccCcCHHHHHHHHHHHcCccccCccceEEEEcC
Confidence 13456689999999999999997642 244 677764
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=183.45 Aligned_cols=222 Identities=15% Similarity=0.155 Sum_probs=155.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
|++|+|+||||+|+||++++++|+++|++|++++|++++...+...... ...++.++.+|++|++++.++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK--AGGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999999999999999987765543333222 23578899999999998877665
Q ss_pred -CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+|+..... ..+.+...+++|+.++.++++.+. +. +.++||++||.+.+++.+
T Consensus 80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~~~~~~~~---------- 148 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQ-GGGRIINMASVHGLVGSA---------- 148 (258)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc-CCeEEEEEcchhhccCCC----------
Confidence 589999999863221 122334567789999666665554 44 567999999976655311
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCc--------chHHHHHHHHhC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLIKG 219 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~--------~~~~~~~~~~~~ 219 (328)
..+.|+.+|.+.+.+.+.++.+ .+++++++||+.+++|....... ............
T Consensus 149 ------------~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (258)
T PRK12429 149 ------------GKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVLLP 216 (258)
T ss_pred ------------CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHHhc
Confidence 1245999999999999888765 37999999999999985322110 000111111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....++|++++|+|+++.+++.... ..| .|++.+
T Consensus 217 ----~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~ 253 (258)
T PRK12429 217 ----LVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDG 253 (258)
T ss_pred ----cCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCC
Confidence 1234679999999999999987543 235 556554
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=185.19 Aligned_cols=220 Identities=17% Similarity=0.138 Sum_probs=158.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.+....+.... ..++.++.+|++|++++.++++
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVERF 78 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999876554433321 2358889999999988877665
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC----CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+|+.... ...+.+...+++|+.++.++++++.+.. ..+++|++||....++.+
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 148 (257)
T PRK07067 79 GGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEA---------- 148 (257)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCC----------
Confidence 57999999986422 1223455778999999999999986531 225899999975544211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcch-------HHHHHHHHhCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTS-------AAAVLSLIKGA 220 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~-------~~~~~~~~~~~ 220 (328)
+...|+.+|.+.+.+++.++.+ +|+++++++||.++++......... .........+
T Consensus 149 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~- 215 (257)
T PRK07067 149 ------------LVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGE- 215 (257)
T ss_pred ------------CCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhh-
Confidence 1245999999999999998875 5899999999999998532210000 0000111111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCCC--CC-cEEEec
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~ 257 (328)
+...+.+.+++|+|+++.+++..... .| .|++.+
T Consensus 216 ---~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~g 252 (257)
T PRK07067 216 ---AVPLGRMGVPDDLTGMALFLASADADYIVAQTYNVDG 252 (257)
T ss_pred ---cCCCCCccCHHHHHHHHHHHhCcccccccCcEEeecC
Confidence 23356799999999999999986432 34 777765
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=172.42 Aligned_cols=213 Identities=17% Similarity=0.166 Sum_probs=162.0
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
+..++|.++|||||+.||.++++.|.+.|++|+...|+.+..+.+...+.. ..+..+..|++|++++.++++
T Consensus 2 ~~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~~~~i~~~~~ 77 (246)
T COG4221 2 TTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAVEAAIEALPE 77 (246)
T ss_pred CCCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHHHHHHHHHHH
Confidence 344578999999999999999999999999999999999888776665422 468889999999988666554
Q ss_pred ---CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|++|||||... ....+.|...+++|+.|+.+..++..+.+ +.+++|.+||+++.+..+
T Consensus 78 ~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~--------- 148 (246)
T COG4221 78 EFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYP--------- 148 (246)
T ss_pred hhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCC---------
Confidence 6899999999732 33456788999999999999999887642 456999999987666211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC-CcchHHHHHHHHhCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT-LNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~ 225 (328)
..+.|+.+|+....+...++.+. +++++.+-||.+-....... .........+...+
T Consensus 149 -------------~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~~------ 209 (246)
T COG4221 149 -------------GGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYKG------ 209 (246)
T ss_pred -------------CCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHhcc------
Confidence 23569999999999998888764 89999999999855422111 01011222222222
Q ss_pred CCccceeHHHHHHHHHHhhcCCCCCC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPSANG 251 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~~~g 251 (328)
...+.++|+|+++.+++..|..-.
T Consensus 210 --~~~l~p~dIA~~V~~~~~~P~~vn 233 (246)
T COG4221 210 --GTALTPEDIAEAVLFAATQPQHVN 233 (246)
T ss_pred --CCCCCHHHHHHHHHHHHhCCCccc
Confidence 248899999999999999986533
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=180.72 Aligned_cols=231 Identities=16% Similarity=0.077 Sum_probs=164.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+++||||||+||+++++.|+++|++|++++|+..+.+.+.... ...++.++.+|++|++++..+++ +
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL----GDARFVPVACDLTDAASLAAALANAAAERGP 77 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999999999876554433322 12468899999999998877665 4
Q ss_pred ccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 82 ~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
+|+|||++|..... ..+.+...+++|+.++.++++++... .+.+++|++||...... . .
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-~-----~------- 144 (257)
T PRK07074 78 VDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA-L-----G------- 144 (257)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC-C-----C-------
Confidence 89999999863321 11223345678999999998887432 14568999999643210 0 0
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
...|+.+|.+.+.+++.++.+. |++++++||+.+.++...........+....... ...++|
T Consensus 145 ----------~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 209 (257)
T PRK07074 145 ----------HPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKW-----YPLQDF 209 (257)
T ss_pred ----------CcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhc-----CCCCCC
Confidence 1239999999999999998764 7999999999999885332111112232322221 234679
Q ss_pred eeHHHHHHHHHHhhcCC--CCCCcE-EEec-CccCHHHHHHHHHH
Q 020266 231 VNVKDVANAHIQAFEVP--SANGRY-CLVE-RVSHYSEIVNIIRE 271 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~--~~~g~~-~~~~-~~~~~~el~~~i~~ 271 (328)
++++|++++++.++.+. ...|.+ ++.+ ...+++|+++.+.+
T Consensus 210 ~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 210 ATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 99999999999999753 234644 5554 67779999988764
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=181.75 Aligned_cols=222 Identities=18% Similarity=0.167 Sum_probs=157.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+||||||+|+||++++++|+++|++|++++|++++...+...+... +.++.++++|++|++++.++++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999999876544433333221 2458889999999998887775
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.+++|++||.....+.+
T Consensus 85 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~---------- 154 (255)
T PRK07523 85 IGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARP---------- 154 (255)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCCC----------
Confidence 47999999987422 122334567889999999999988753 1457899999965332110
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
..+.|+.+|.+.+.+++.++.+ +|++++++||+.+.++....... .......+....+ .
T Consensus 155 ------------~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~-~~~~~~~~~~~~~-----~ 216 (255)
T PRK07523 155 ------------GIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVA-DPEFSAWLEKRTP-----A 216 (255)
T ss_pred ------------CCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhcc-CHHHHHHHHhcCC-----C
Confidence 1245999999999999999874 58999999999999985322111 1111112222111 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
..+.+++|+|++++.++.... ..| .+++.+
T Consensus 217 ~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~g 249 (255)
T PRK07523 217 GRWGKVEELVGACVFLASDASSFVNGHVLYVDG 249 (255)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCccCcEEEECC
Confidence 347789999999999997532 245 555544
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=179.36 Aligned_cols=217 Identities=18% Similarity=0.176 Sum_probs=157.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||++++++|+++|++|++++|+......+...... ...++.++.+|+++.+++.++++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVA--DGGTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999986554443333221 12357788999999988776554
Q ss_pred -CccEEEEccCCCCC--------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 -GCDGVCHTASPFYH--------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 -~~d~vih~a~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||.+.+.+
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~---------- 151 (250)
T PRK07774 82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWLY---------- 151 (250)
T ss_pred CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccCC----------
Confidence 57999999996421 112234466889999999999988764 13468999999754321
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
.+.|+.+|.+.|.+++.+++++ ++++++++||.+.++...... .........++.+.
T Consensus 152 ---------------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~~~~~--- 211 (250)
T PRK07774 152 ---------------SNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVT--PKEFVADMVKGIPL--- 211 (250)
T ss_pred ---------------ccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccC--CHHHHHHHHhcCCC---
Confidence 1349999999999999998874 799999999999887643221 12233344444321
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
..+.+++|++++++.++.... ..| .|++.+
T Consensus 212 --~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~ 244 (250)
T PRK07774 212 --SRMGTPEDLVGMCLFLLSDEASWITGQIFNVDG 244 (250)
T ss_pred --CCCcCHHHHHHHHHHHhChhhhCcCCCEEEECC
Confidence 225689999999999988642 244 677765
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=182.45 Aligned_cols=235 Identities=16% Similarity=0.116 Sum_probs=159.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++.+|+.+..+.....+.. ...++.++.+|++|++++.++++
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA--EGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999986554443322221 12467889999999998877765
Q ss_pred --CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhc----CCCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAK----FPSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|+||||||... ....+.+...+++|+.++.++++++.+ ....+++|++||.+++.+.+
T Consensus 81 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~--------- 151 (275)
T PRK05876 81 LGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNA--------- 151 (275)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCC---------
Confidence 4799999998632 122233456789999999999998754 21246899999976543211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHH-HHHhCC--CCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVL-SLIKGA--QTY 223 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~--~~~ 223 (328)
+...|+.+|.+.+.+.+.++.+ .|+++++++|+.+.++...... .... ...... ...
T Consensus 152 -------------~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~----~~~~~~~~~~~~~~~~ 214 (275)
T PRK05876 152 -------------GLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSE----RIRGAACAQSSTTGSP 214 (275)
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchh----hhcCcccccccccccc
Confidence 1245999999877777776654 3899999999999887532210 0000 000000 011
Q ss_pred C--CCCccceeHHHHHHHHHHhhcCCCCCCcEEEecCccCHHHHHHHHHHh
Q 020266 224 P--NVTFGWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIREL 272 (328)
Q Consensus 224 ~--~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~~~ 272 (328)
+ ...+++++++|+|++++.++.++. .|.+. ......++.+.+.+.
T Consensus 215 ~~~~~~~~~~~~~dva~~~~~ai~~~~---~~~~~-~~~~~~~~~~~~~~~ 261 (275)
T PRK05876 215 GPLPLQDDNLGVDDIAQLTADAILANR---LYVLP-HAASRASIRRRFERI 261 (275)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCC---eEEec-ChhhHHHHHHHHHHH
Confidence 1 234678999999999999998642 34444 333444454444443
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-24 Score=180.53 Aligned_cols=218 Identities=19% Similarity=0.189 Sum_probs=157.7
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|+++..+++++++||||+|+||+++++.|+++|++|++++|+.++...+... .+..++.+|+++++++.++++
T Consensus 1 ~~~~~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~ 73 (245)
T PRK07060 1 MNMAFDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE-------TGCEPLRLDVGDDAAIRAALA 73 (245)
T ss_pred CCcccccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------hCCeEEEecCCCHHHHHHHHH
Confidence 6666667789999999999999999999999999999999986554432221 135678899999888887776
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|+|||+|+.... ...+.+.+.+++|+.++.++++++.+. +..++||++||.+.+++.+
T Consensus 74 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------- 145 (245)
T PRK07060 74 AAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLP-------- 145 (245)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCC--------
Confidence 48999999986332 122334566789999999999988653 1236899999976555311
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.|.+++.++.+ .+++++++||+.++++........ ......+... .
T Consensus 146 --------------~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~-~~~~~~~~~~-----~ 205 (245)
T PRK07060 146 --------------DHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSD-PQKSGPMLAA-----I 205 (245)
T ss_pred --------------CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccC-HHHHHHHHhc-----C
Confidence 1245999999999999999875 379999999999999863321111 1111112221 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--CCcE
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPSA--NGRY 253 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~~--~g~~ 253 (328)
....+++++|++++++.++..+.. .|.+
T Consensus 206 ~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~ 235 (245)
T PRK07060 206 PLGRFAEVDDVAAPILFLLSDAASMVSGVS 235 (245)
T ss_pred CCCCCCCHHHHHHHHHHHcCcccCCccCcE
Confidence 234589999999999999986532 4544
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=179.09 Aligned_cols=221 Identities=15% Similarity=0.049 Sum_probs=151.3
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|+++||||+|+||++++++|+++|++|++++|+.. ...+...+.. ...++.++.+|+++++++.++++
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRA--AGGEALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHh--cCCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999743 2222222111 13467889999999887776665
Q ss_pred ---CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|++|||||... ....+.+...+++|+.++..+++.+.+. .+.++||++||.+. ++.
T Consensus 81 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~-~~~--------- 150 (260)
T PRK12823 81 AFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIAT-RGI--------- 150 (260)
T ss_pred HcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccc-cCC---------
Confidence 5899999998421 1223344567789999888776655532 14568999999653 211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCC---------CC-CcchHHHHHH
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQ---------PT-LNTSAAAVLS 215 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~---------~~-~~~~~~~~~~ 215 (328)
....|+.+|.+.+.+++.++.+. |+++++++||.+++|... .. .......+.+
T Consensus 151 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (260)
T PRK12823 151 --------------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQ 216 (260)
T ss_pred --------------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHH
Confidence 01349999999999999998775 899999999999997311 00 0111122222
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+.+ ..-+.+++|+|+++++++.... ..| .+++.+
T Consensus 217 ~~~~~~-----~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~g 256 (260)
T PRK12823 217 TLDSSL-----MKRYGTIDEQVAAILFLASDEASYITGTVLPVGG 256 (260)
T ss_pred HhccCC-----cccCCCHHHHHHHHHHHcCcccccccCcEEeecC
Confidence 222221 2235689999999999887542 245 566654
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-24 Score=172.61 Aligned_cols=183 Identities=28% Similarity=0.418 Sum_probs=140.4
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEccCC
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTASP 91 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a~~ 91 (328)
|+|+||||++|+.++++|+++|++|+++.|++.+... ..+++++.+|+.|++++.++++++|+|||+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 7999999999999999999999999999999776543 358999999999999999999999999999975
Q ss_pred CCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhh
Q 020266 92 FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK 171 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK 171 (328)
... +...++++++++++. +++++|++||.+ .+... ......+. .+ ....|...|
T Consensus 71 ~~~------------~~~~~~~~~~a~~~~-~~~~~v~~s~~~-~~~~~----~~~~~~~~---~~-----~~~~~~~~~ 124 (183)
T PF13460_consen 71 PPK------------DVDAAKNIIEAAKKA-GVKRVVYLSSAG-VYRDP----PGLFSDED---KP-----IFPEYARDK 124 (183)
T ss_dssp TTT------------HHHHHHHHHHHHHHT-TSSEEEEEEETT-GTTTC----TSEEEGGT---CG-----GGHHHHHHH
T ss_pred hcc------------ccccccccccccccc-ccccceeeeccc-cCCCC----Cccccccc---cc-----chhhhHHHH
Confidence 322 277889999999998 899999999976 44211 11111111 11 013488999
Q ss_pred HHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 172 ~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
..+|++++ +.+++++++||+.+||+.... ...... .+....++|+.+|+|++++.++++
T Consensus 125 ~~~e~~~~----~~~~~~~ivrp~~~~~~~~~~-~~~~~~-----------~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 125 REAEEALR----ESGLNWTIVRPGWIYGNPSRS-YRLIKE-----------GGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp HHHHHHHH----HSTSEEEEEEESEEEBTTSSS-EEEESS-----------TSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred HHHHHHHH----hcCCCEEEEECcEeEeCCCcc-eeEEec-----------cCCCCcCcCCHHHHHHHHHHHhCC
Confidence 99988884 358999999999999986331 111101 134556899999999999998864
|
... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=192.69 Aligned_cols=235 Identities=16% Similarity=0.155 Sum_probs=161.6
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhc-----cC--CCCcEEEEEccCCCcCchHH
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLAL-----DG--ASERLQLFKANLLEEGSFDS 77 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~--~~~~~~~~~~Dl~~~~~~~~ 77 (328)
.++++++||||||+|+||++++++|+++|++|++++|+.++...+...+.. .+ ...++.++.+|++|.+++.+
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 345688999999999999999999999999999999987765543332211 01 12358899999999999999
Q ss_pred hhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020266 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (328)
Q Consensus 78 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 157 (328)
++.++|+|||++|...... ..+...+++|+.|+.+++++|++. ++++||++||.++.. .+ .. +. ...
T Consensus 156 aLggiDiVVn~AG~~~~~v-~d~~~~~~VN~~Gt~nLl~Aa~~a-gVgRIV~VSSiga~~-~g---~p-----~~-~~~- 222 (576)
T PLN03209 156 ALGNASVVICCIGASEKEV-FDVTGPYRIDYLATKNLVDAATVA-KVNHFILVTSLGTNK-VG---FP-----AA-ILN- 222 (576)
T ss_pred HhcCCCEEEEccccccccc-cchhhHHHHHHHHHHHHHHHHHHh-CCCEEEEEccchhcc-cC---cc-----cc-chh-
Confidence 9999999999998643211 123466789999999999999987 788999999975421 00 00 00 000
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHH
Q 020266 158 EVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVA 237 (328)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a 237 (328)
....|...|..+|..+. ..|+++++||||.++++.+..... ..+. ...+. ......+..+|+|
T Consensus 223 -----sk~~~~~~KraaE~~L~----~sGIrvTIVRPG~L~tp~d~~~~t---~~v~-~~~~d----~~~gr~isreDVA 285 (576)
T PLN03209 223 -----LFWGVLCWKRKAEEALI----ASGLPYTIVRPGGMERPTDAYKET---HNLT-LSEED----TLFGGQVSNLQVA 285 (576)
T ss_pred -----hHHHHHHHHHHHHHHHH----HcCCCEEEEECCeecCCccccccc---ccee-ecccc----ccCCCccCHHHHH
Confidence 11337788888888875 368999999999999875331100 0000 00000 1112368899999
Q ss_pred HHHHHhhcCCC-CCC-cEEEecCc----cCHHHHHHHH
Q 020266 238 NAHIQAFEVPS-ANG-RYCLVERV----SHYSEIVNII 269 (328)
Q Consensus 238 ~~~~~~~~~~~-~~g-~~~~~~~~----~~~~el~~~i 269 (328)
++++.++.++. ..+ ++.+.++. .++.+++..+
T Consensus 286 ~vVvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 286 ELMACMAKNRRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHHHcCchhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 99999998654 334 77666432 4455555544
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=178.85 Aligned_cols=223 Identities=20% Similarity=0.176 Sum_probs=154.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
++++++|+||||+|+||++++++|+++|++|+++ .|+..+......... ....++.++.+|++|++++.++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~d~~~i~~~~~~~~~ 80 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIE--SNGGKAFLIEADLNSIDGVKKLVEQLKN 80 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH--hcCCcEEEEEcCcCCHHHHHHHHHHHHH
Confidence 3557899999999999999999999999999775 565433322222111 113468889999999998877665
Q ss_pred ---------CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC-CCccEEEEecchhhhccCCCCCCC
Q 020266 81 ---------GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 ---------~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
++|+|||+||..... ..+.+...+++|+.++.++++++.+. ...+++|++||.+++.+.+
T Consensus 81 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~----- 155 (254)
T PRK12746 81 ELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFT----- 155 (254)
T ss_pred HhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCC-----
Confidence 489999999874321 12223456779999999999988764 1335899999975443110
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
..+.|+.+|.+.|.+++.++.+ .++++++++|+.+.+|....... ...+........
T Consensus 156 -----------------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~--~~~~~~~~~~~~- 215 (254)
T PRK12746 156 -----------------GSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLD--DPEIRNFATNSS- 215 (254)
T ss_pred -----------------CCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhcc--ChhHHHHHHhcC-
Confidence 1245999999999999988775 47999999999999885322110 011122222221
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCC--CC-cEEEecC
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~~ 258 (328)
....+.+++|+++++..++.++.. .| .|++.++
T Consensus 216 ---~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 216 ---VFGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred ---CcCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 123467899999999988876432 34 7777543
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=175.99 Aligned_cols=219 Identities=18% Similarity=0.140 Sum_probs=157.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
|++|+|+||||+|+||++++++|+++|++|+++.|++.+...+...... ...++.++.+|++|++++.++++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRA--AGGEARVLVFDVSDEAAVRALIEAAVEAF 80 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4468999999999999999999999999999999987665443333221 23568899999999988777665
Q ss_pred -CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|+|||+||..... ..+.+...++.|+.++.++++++.+. .+.+++|++||.+..++..
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~----------- 149 (246)
T PRK05653 81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNP----------- 149 (246)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCCC-----------
Confidence 469999999874321 12233467889999999999888531 2567999999976544211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+++.++++ .+++++++||+.++++.... +........... ....
T Consensus 150 -----------~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~----~~~~~~~~~~~~----~~~~ 210 (246)
T PRK05653 150 -----------GQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG----LPEEVKAEILKE----IPLG 210 (246)
T ss_pred -----------CCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh----hhHHHHHHHHhc----CCCC
Confidence 1245999999999999988765 48999999999999986432 112222222111 1125
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.+++++|+++++..++.... ..| .|++.+
T Consensus 211 ~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 242 (246)
T PRK05653 211 RLGQPEEVANAVAFLASDAASYITGQVIPVNG 242 (246)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCCEEEeCC
Confidence 68899999999999987532 245 566654
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=179.36 Aligned_cols=222 Identities=16% Similarity=0.128 Sum_probs=154.5
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|++|||||+|+||++++++|+++|++|++++|+++....+.... . ..++.++.+|++|++++.++++
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARL---P-GAKVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---h-cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999865544332221 1 1257889999999998777664
Q ss_pred ---CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCc-cEEEEecchhhhccCCCCCCCCc
Q 020266 81 ---GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSI-KRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ---~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~-~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+. +++|++||.+...+.+
T Consensus 83 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~------- 155 (264)
T PRK12829 83 RFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYP------- 155 (264)
T ss_pred HhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCC-------
Confidence 68999999987521 122334577899999999998887432 133 5788888865444211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc--------chHHHHHHH
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSL 216 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--------~~~~~~~~~ 216 (328)
....|+.+|.+.|.+++.++.+. +++++++|||.++||....... .........
T Consensus 156 ---------------~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (264)
T PRK12829 156 ---------------GRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEY 220 (264)
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHH
Confidence 12349999999999999987753 8999999999999986322110 000000111
Q ss_pred HhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 217 IKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 217 ~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
... .....+++++|+++++..++... ...| .|++.+
T Consensus 221 ~~~-----~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~ 259 (264)
T PRK12829 221 LEK-----ISLGRMVEPEDIAATALFLASPAARYITGQAISVDG 259 (264)
T ss_pred Hhc-----CCCCCCCCHHHHHHHHHHHcCccccCccCcEEEeCC
Confidence 111 12335899999999998888642 2245 666665
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=166.05 Aligned_cols=294 Identities=18% Similarity=0.176 Sum_probs=212.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHC-CCe-EEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--Ccc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSR-GYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCD 83 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 83 (328)
+..+|||||+-|.+|..++..|... |.+ |+..+.......- -..-.++..|+.|...+++++- ++|
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V----------~~~GPyIy~DILD~K~L~eIVVn~RId 112 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANV----------TDVGPYIYLDILDQKSLEEIVVNKRID 112 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhh----------cccCCchhhhhhccccHHHhhcccccc
Confidence 3568999999999999999988765 655 5554443222211 1234577899999999999875 699
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
++||..+..+...+.+...+.++|+.|..|+++.++++ +. ++..-||+++++ +.++ ..|-..- +..++
T Consensus 113 WL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~-kL-~iFVPSTIGAFG-PtSP---RNPTPdl------tIQRP 180 (366)
T KOG2774|consen 113 WLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKH-KL-KVFVPSTIGAFG-PTSP---RNPTPDL------TIQRP 180 (366)
T ss_pred eeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHc-Ce-eEeecccccccC-CCCC---CCCCCCe------eeecC
Confidence 99999987555444555578899999999999999998 66 456667776555 2211 1111111 12334
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCC--CCcchHHHHHH-HHhCC---CCCCCCCccceeHHHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP--TLNTSAAAVLS-LIKGA---QTYPNVTFGWVNVKDVA 237 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~-~~~~~---~~~~~~~~~~v~v~D~a 237 (328)
.+.||.||..+|.+-+.+..++|+++-++|++.+....-.+ ........++. ..+|+ ...|+....++|.+|+.
T Consensus 181 RTIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~ 260 (366)
T KOG2774|consen 181 RTIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCM 260 (366)
T ss_pred ceeechhHHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHH
Confidence 57799999999999999999999999999988887642211 11223334444 44555 45689999999999999
Q ss_pred HHHHHhhcCCCC---CCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCCC--CCCceecchHHH-HhcCCc-cccHH
Q 020266 238 NAHIQAFEVPSA---NGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKP--HVPTYQVLKEKV-KNLGIE-FIPVE 310 (328)
Q Consensus 238 ~~~~~~~~~~~~---~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~-~~lg~~-~~~~~ 310 (328)
++++..+..++. ..+||+.+-.+|-.|+++.+.+.+|...+.+....... ......+|-+.+ +++.|+ ..++.
T Consensus 261 ~~~~~~~~a~~~~lkrr~ynvt~~sftpee~~~~~~~~~p~~~i~y~~~srq~iad~wp~~~dds~ar~~wh~~h~~~l~ 340 (366)
T KOG2774|consen 261 ASVIQLLAADSQSLKRRTYNVTGFSFTPEEIADAIRRVMPGFEIDYDICTRQSIADSWPMSLDDSEARTEWHEKHSLHLL 340 (366)
T ss_pred HHHHHHHhCCHHHhhhheeeeceeccCHHHHHHHHHhhCCCceeecccchhhhhhhhcccccCchhHhhHHHHhhhhhHH
Confidence 999999987654 23899999999999999999999997766665443322 223455777778 999999 88888
Q ss_pred HHHHHHHHHHHHc
Q 020266 311 VSLKETIESLKEK 323 (328)
Q Consensus 311 ~~l~~~~~~~~~~ 323 (328)
.-+.-++...+++
T Consensus 341 ~~i~~~i~~~~~n 353 (366)
T KOG2774|consen 341 SIISTVVAVHKSN 353 (366)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777655543
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=178.69 Aligned_cols=224 Identities=15% Similarity=0.083 Sum_probs=152.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++++|+||||+|+||++++++|+++|++|++..|+... .......... ...++.++.+|+++++++.++++
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKE--NGGEGIGVLADVSTREGCETLAKATIDR 81 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHH--cCCeeEEEEeccCCHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999887764322 1111111111 12357788999999988776654
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC-CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. ...++||++||..++.+.+
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------ 149 (252)
T PRK06077 82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPAY------------ 149 (252)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCCC------------
Confidence 57999999986221 111123466889999999999988764 1235899999975432110
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
+.+.|+.+|...|.+++.++.++ ++++.+++|+.+.++.................... .....+
T Consensus 150 ----------~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 215 (252)
T PRK06077 150 ----------GLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEKF----TLMGKI 215 (252)
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHHhc----CcCCCC
Confidence 23569999999999999998875 78999999999988742111000000001111111 112368
Q ss_pred eeHHHHHHHHHHhhcCCCCCC-cEEEecC
Q 020266 231 VNVKDVANAHIQAFEVPSANG-RYCLVER 258 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~~~g-~~~~~~~ 258 (328)
++++|+|++++.++..+...| .|++.++
T Consensus 216 ~~~~dva~~~~~~~~~~~~~g~~~~i~~g 244 (252)
T PRK06077 216 LDPEEVAEFVAAILKIESITGQVFVLDSG 244 (252)
T ss_pred CCHHHHHHHHHHHhCccccCCCeEEecCC
Confidence 999999999999998665545 7887753
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=175.35 Aligned_cols=220 Identities=13% Similarity=0.130 Sum_probs=155.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecC-CCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++++++||||+|+||++++++|+++|++|+++.+. +.....+...... ...++.++.+|+++++.+.++++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGK--EGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 557999999999999999999999999999876553 2222222122111 12468899999999998877775
Q ss_pred --CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+|+..... ..+.+.+.+++|+.++.++++++.+. .+.+++|++||.++.++..
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 151 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGF---------- 151 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCC----------
Confidence 379999999874321 12345577899999999999988753 1346899999976554211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
+...|+.+|.+.+.+++.++.+. ++++++++|+.+.++..... ..........+ ...
T Consensus 152 ------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~---~~~~~~~~~~~-----~~~ 211 (247)
T PRK12935 152 ------------GQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEV---PEEVRQKIVAK-----IPK 211 (247)
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhc---cHHHHHHHHHh-----CCC
Confidence 12459999999999998887754 89999999999987642211 11112222222 224
Q ss_pred ccceeHHHHHHHHHHhhcCCC-CCC-cEEEecC
Q 020266 228 FGWVNVKDVANAHIQAFEVPS-ANG-RYCLVER 258 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~-~~g-~~~~~~~ 258 (328)
+.+.+++|+++++++++.... ..| .|++.++
T Consensus 212 ~~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g 244 (247)
T PRK12935 212 KRFGQADEIAKGVVYLCRDGAYITGQQLNINGG 244 (247)
T ss_pred CCCcCHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence 568999999999999987542 234 7777654
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=177.28 Aligned_cols=221 Identities=12% Similarity=0.060 Sum_probs=155.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+|+||||+|+||+++++.|+++|++|++++|+......+...+.......++.++.+|+++++++.++++ .
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999999999876554443333222112468899999999988776654 5
Q ss_pred ccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CC-ccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PS-IKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 82 ~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
+|+|||+||.... ...+.+...+++|+.++.++++++.+. .+ .+++|++||.+..++..
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~------------ 149 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSK------------ 149 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCC------------
Confidence 7999999986322 122234567789999988888776552 13 35899999975444211
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHH-----------HHHHh
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAV-----------LSLIK 218 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~-----------~~~~~ 218 (328)
....|+.+|.+.+.+++.++.+ +|++++++|||.++++..... .+.... .....
T Consensus 150 ----------~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 217 (259)
T PRK12384 150 ----------HNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQS--LLPQYAKKLGIKPDEVEQYYID 217 (259)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhh--hhHHHHHhcCCChHHHHHHHHH
Confidence 1245999999999999988764 689999999999887643211 111111 11111
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCCC--CC-cEEEecC
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~~ 258 (328)
....+.+++++|++.+++.++.+... .| .|++.++
T Consensus 218 -----~~~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g 255 (259)
T PRK12384 218 -----KVPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGG 255 (259)
T ss_pred -----hCcccCCCCHHHHHHHHHHHcCcccccccCceEEEcCC
Confidence 12345689999999999988875432 45 6777653
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=177.25 Aligned_cols=226 Identities=21% Similarity=0.202 Sum_probs=153.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||+++++.|+++|++|+++.|+.++...+...+........+.++.+|++|++++.++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999876655443333221112356778999999998887776
Q ss_pred -CccEEEEccCCCCC--------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 -GCDGVCHTASPFYH--------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 -~~d~vih~a~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|+|||||+.... ...+.+...+++|+.++..+++++.+. .+.+++|++||.++.++.. ..
T Consensus 82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------~~ 155 (256)
T PRK09186 82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPK------FE 155 (256)
T ss_pred CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhcccc------ch
Confidence 37999999975321 112234466788998887777665542 1456999999976655321 11
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
..|+.+... ...|+.+|.+.+.+++.++.+ .++++++++|+.++++.. ..+.... ....
T Consensus 156 ~~~~~~~~~------~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~-------~~~~~~~-~~~~---- 217 (256)
T PRK09186 156 IYEGTSMTS------PVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP-------EAFLNAY-KKCC---- 217 (256)
T ss_pred hccccccCC------cchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC-------HHHHHHH-HhcC----
Confidence 122222111 135999999999999888775 479999999998876531 1122221 1111
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCCcEEEe
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~ 256 (328)
....+++++|+|++++.++.+.. ..|.++..
T Consensus 218 ~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~ 250 (256)
T PRK09186 218 NGKGMLDPDDICGTLVFLLSDQSKYITGQNIIV 250 (256)
T ss_pred CccCCCCHHHhhhhHhheeccccccccCceEEe
Confidence 12347899999999999997543 24655443
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=179.43 Aligned_cols=216 Identities=21% Similarity=0.177 Sum_probs=150.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
|++|+++||||+|+||++++++|+++|++|++++|+.++...+. ..++.++.+|++|++++.++++
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~--------~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA--------SLGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--------hCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999865443321 1257889999999998887775
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHH----HHhcCCCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLN----SCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+|||+||.... ...+.+...+++|+.++.++++ .+++. +.+++|++||.+...+.+
T Consensus 73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS~~~~~~~~---------- 141 (273)
T PRK06182 73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQ-RSGRIINISSMGGKIYTP---------- 141 (273)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcchhhcCCCC----------
Confidence 68999999986332 1223455778999998666655 44444 557899999965432100
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC---------cchHHH---HHH
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL---------NTSAAA---VLS 215 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~---------~~~~~~---~~~ 215 (328)
....|+.+|.+.+.+++.++.+ +|++++++|||.+.++...... ...... +.+
T Consensus 142 ------------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (273)
T PRK06182 142 ------------LGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAA 209 (273)
T ss_pred ------------CccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHH
Confidence 1245999999999998877754 5899999999999887532100 000000 000
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCCcEEEec
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE 257 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~ 257 (328)
.+.. ......+.+++|+|++++.++........|+++.
T Consensus 210 ~~~~----~~~~~~~~~~~~vA~~i~~~~~~~~~~~~~~~g~ 247 (273)
T PRK06182 210 SMRS----TYGSGRLSDPSVIADAISKAVTARRPKTRYAVGF 247 (273)
T ss_pred HHHH----hhccccCCCHHHHHHHHHHHHhCCCCCceeecCc
Confidence 1110 0123457899999999999998654445676553
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-23 Score=179.35 Aligned_cols=222 Identities=14% Similarity=0.108 Sum_probs=157.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh--hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|++|||||+|+||+++++.|+++|++|++..++.+.. ..+...+.. ...++.++.+|+++++++.++++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQA--EGRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999888764432 222222221 12467889999999988777664
Q ss_pred ----CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ----~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||... ....+.+...+++|+.++.++++++.+.. ..+++|++||.+++.+.+
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~--------- 200 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSP--------- 200 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCC---------
Confidence 6899999998632 11234566889999999999999998642 235899999976544211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.+.+|..... ......+....... .
T Consensus 201 -------------~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~-~~~~~~~~~~~~~~-----p 261 (300)
T PRK06128 201 -------------TLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSG-GQPPEKIPDFGSET-----P 261 (300)
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccC-CCCHHHHHHHhcCC-----C
Confidence 1234999999999999999876 489999999999999864221 11122222222211 2
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--CC-cEEEec
Q 020266 227 TFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~ 257 (328)
...+.+++|++.++++++..... .| .|++.+
T Consensus 262 ~~r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~g 295 (300)
T PRK06128 262 MKRPGQPVEMAPLYVLLASQESSYVTGEVFGVTG 295 (300)
T ss_pred CCCCcCHHHHHHHHHHHhCccccCccCcEEeeCC
Confidence 23477999999999998875332 45 566654
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-23 Score=174.96 Aligned_cols=218 Identities=18% Similarity=0.171 Sum_probs=155.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|+++.|+.+.......... ...++.++++|++|++++.++++
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 457899999999999999999999999999999998655443322222 23468899999999998877665
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+|||+|+.... ...+.+...+++|+.++.++.+++. +. +.++||++||.+..++.+
T Consensus 80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS~~~~~~~~---------- 148 (252)
T PRK06138 80 GRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQ-GGGSIVNTASQLALAGGR---------- 148 (252)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhc-CCeEEEEECChhhccCCC----------
Confidence 68999999996432 1222344568899999988777654 33 557899999987665321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcc--hHHHHHHHHhCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~--~~~~~~~~~~~~~~~~~ 225 (328)
..+.|+.+|.+.+.+++.++.+. +++++++|||.++++........ ....+....... .
T Consensus 149 ------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~----~ 212 (252)
T PRK06138 149 ------------GRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRAR----H 212 (252)
T ss_pred ------------CccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhc----C
Confidence 12459999999999999998765 89999999999998853221100 011122222211 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--CCcEE
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPSA--NGRYC 254 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~~--~g~~~ 254 (328)
....+++++|++++++.++.++.. .|.+.
T Consensus 213 ~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~ 243 (252)
T PRK06138 213 PMNRFGTAEEVAQAALFLASDESSFATGTTL 243 (252)
T ss_pred CCCCCcCHHHHHHHHHHHcCchhcCccCCEE
Confidence 122478999999999999987543 45443
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=175.23 Aligned_cols=229 Identities=22% Similarity=0.296 Sum_probs=156.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCc-CchHHhh-CCccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIV-DGCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~-~~~d~ 84 (328)
..+|+|+||||||+||++++++|+++|++|+++.|+.++.... . ....+++++.+|+++. +.+.+.+ .++|+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~---~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~ 88 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS---L---PQDPSLQIVRADVTEGSDKLVEAIGDDSDA 88 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh---c---ccCCceEEEEeeCCCCHHHHHHHhhcCCCE
Confidence 3478999999999999999999999999999999986543221 1 1124689999999984 5676777 68999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
|||+++..... ++. ..+++|..++.++++++++. ++++||++||++ +|+.. ...+..+... +. ...
T Consensus 89 vi~~~g~~~~~--~~~-~~~~~n~~~~~~ll~a~~~~-~~~~iV~iSS~~-v~g~~----~~~~~~~~~~--~~---~~~ 154 (251)
T PLN00141 89 VICATGFRRSF--DPF-APWKVDNFGTVNLVEACRKA-GVTRFILVSSIL-VNGAA----MGQILNPAYI--FL---NLF 154 (251)
T ss_pred EEECCCCCcCC--CCC-CceeeehHHHHHHHHHHHHc-CCCEEEEEcccc-ccCCC----cccccCcchh--HH---HHH
Confidence 99998863211 122 34578999999999999987 788999999975 45321 1111111100 00 001
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhh
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~ 244 (328)
..|..+|..+|.+++ +.+++++++||+.++++...... . .... ......+++.+|+|++++.++
T Consensus 155 ~~~~~~k~~~e~~l~----~~gi~~~iirpg~~~~~~~~~~~--~-------~~~~---~~~~~~~i~~~dvA~~~~~~~ 218 (251)
T PLN00141 155 GLTLVAKLQAEKYIR----KSGINYTIVRPGGLTNDPPTGNI--V-------MEPE---DTLYEGSISRDQVAEVAVEAL 218 (251)
T ss_pred HHHHHHHHHHHHHHH----hcCCcEEEEECCCccCCCCCceE--E-------ECCC---CccccCcccHHHHHHHHHHHh
Confidence 224557888887664 35899999999999986422110 0 0000 111235799999999999999
Q ss_pred cCCCCCC-cEEEec----CccCHHHHHHHHHH
Q 020266 245 EVPSANG-RYCLVE----RVSHYSEIVNIIRE 271 (328)
Q Consensus 245 ~~~~~~g-~~~~~~----~~~~~~el~~~i~~ 271 (328)
..+...+ ++.+.+ ...++.++...+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 219 LCPESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred cChhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 8876544 665553 24788888887764
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-23 Score=179.26 Aligned_cols=171 Identities=14% Similarity=0.115 Sum_probs=126.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|++|||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|++++.++++
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA--QGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999976554443332221 13468889999999998888776
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHH----hcCCC-----ccEEEEecchhhhccCCCCCC
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSC----AKFPS-----IKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~-----~~~~v~~SS~~~~~~~~~~~~ 144 (328)
.+|+||||||.... ...+.+...+++|+.++.++++++ .+... .+++|++||.+++++.+
T Consensus 81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---- 156 (287)
T PRK06194 81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPP---- 156 (287)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCC----
Confidence 47999999997432 122334466889999999987774 33312 25899999976655211
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc-----CccEEEEcCCcccCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGP 200 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~ 200 (328)
..+.|+.+|.+.+.+++.++.++ ++++.++.|+.+..+
T Consensus 157 ------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~ 199 (287)
T PRK06194 157 ------------------AMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTG 199 (287)
T ss_pred ------------------CCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCc
Confidence 12459999999999999988765 367778888776554
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=177.44 Aligned_cols=224 Identities=20% Similarity=0.153 Sum_probs=155.4
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||++++++|+++|++|++++|+......+...+ ....++.++++|++|++++.++++
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSL---GGEPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh---cCCCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 445789999999999999999999999999999998765443332222 123468899999999998887775
Q ss_pred --CccEEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 --GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 --~~d~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||.+..++.+
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~-------- 163 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGL-------- 163 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCC--------
Confidence 68999999986421 1123345789999999999998876531 345899999976655311
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC---CcchHHHHH---HHHhC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT---LNTSAAAVL---SLIKG 219 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~---~~~~~ 219 (328)
....|+.+|.+.|.+++.++.+. ++++++++||.+.++..... .......+. .....
T Consensus 164 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (280)
T PLN02253 164 --------------GPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGK 229 (280)
T ss_pred --------------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhc
Confidence 11349999999999999998864 79999999999988642111 000111111 11111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCCC--CC-cEEEec
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~ 257 (328)
.. ......++++|+|+++.+++..... .| .+++.+
T Consensus 230 ~~---~l~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdg 267 (280)
T PLN02253 230 NA---NLKGVELTVDDVANAVLFLASDEARYISGLNLMIDG 267 (280)
T ss_pred CC---CCcCCCCCHHHHHHHHHhhcCcccccccCcEEEECC
Confidence 10 0012357899999999999875322 45 445543
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-23 Score=174.67 Aligned_cols=219 Identities=18% Similarity=0.148 Sum_probs=155.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++++|+||||+|+||++++++|+++|++|++++|+.++...+...+.. ..++.++.+|++|++++.++++
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999987655443332221 2468899999999999887765
Q ss_pred -CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+|+.... ...+.+...+++|+.++.++++.+.+. .+.++||++||.+++++.+
T Consensus 80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 149 (251)
T PRK07231 80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRP---------- 149 (251)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCC----------
Confidence 57999999986321 122334567889999988888776642 1557899999976554211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc-chHHHHHHHHhCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|...+.+++.++.++ ++++++++||.+.++....... ............ ..
T Consensus 150 ------------~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~-----~~ 212 (251)
T PRK07231 150 ------------GLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLAT-----IP 212 (251)
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcC-----CC
Confidence 12459999999999999988754 8999999999997764322110 001111112221 12
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCCcEEE
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANGRYCL 255 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~ 255 (328)
...+++++|+|.+++.++..+. ..|.++.
T Consensus 213 ~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~ 243 (251)
T PRK07231 213 LGRLGTPEDIANAALFLASDEASWITGVTLV 243 (251)
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCCCCeEE
Confidence 3457899999999999997643 2465433
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-23 Score=174.64 Aligned_cols=210 Identities=19% Similarity=0.156 Sum_probs=150.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+|+||||+|+||++++++|+++|++|++++|+.+....+.... ..++.++++|++|.+++.++++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 455789999999999999999999999999999999754433322211 2367889999999887665543
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.. ...++|++||.+..++.+
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~------------ 145 (249)
T PRK06500 78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMP------------ 145 (249)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCC------------
Confidence 68999999986332 1223455788999999999999998631 235788888876665321
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC---CcchHHHHHHHHhCCCCCCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 226 (328)
..+.|+.+|.+.|.+++.++.+. +++++++|||.+++|..... ......+......+.+
T Consensus 146 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~----- 210 (249)
T PRK06500 146 ----------NSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVP----- 210 (249)
T ss_pred ----------CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCC-----
Confidence 12459999999999999887754 89999999999999842210 0111222233333222
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~ 247 (328)
..-+..++|+++++.+++...
T Consensus 211 ~~~~~~~~~va~~~~~l~~~~ 231 (249)
T PRK06500 211 LGRFGTPEEIAKAVLYLASDE 231 (249)
T ss_pred CCCCcCHHHHHHHHHHHcCcc
Confidence 122568999999999988753
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=176.29 Aligned_cols=213 Identities=15% Similarity=0.084 Sum_probs=151.5
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC--ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
..+++|+++||||+|+||+++++.|+++|++|++..|+.. ..+.+...... ...++.++.+|++|++++.++++
T Consensus 45 ~~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 122 (294)
T PRK07985 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEE--CGRKAVLLPGDLSDEKFARSLVHEA 122 (294)
T ss_pred CccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHH--cCCeEEEEEccCCCHHHHHHHHHHH
Confidence 3456789999999999999999999999999998877543 22333322222 12467789999999988776654
Q ss_pred -----CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 -----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 -----~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|++||+||... ....+.+...+++|+.++.++++++.+.. ..++||++||.+++.+.+
T Consensus 123 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~-------- 194 (294)
T PRK07985 123 HKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSP-------- 194 (294)
T ss_pred HHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCC--------
Confidence 5799999998521 12234456789999999999999987642 235899999976543211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+++.++.+ +|+++++|+||.+.+|...... .............+
T Consensus 195 --------------~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~-~~~~~~~~~~~~~~---- 255 (294)
T PRK07985 195 --------------HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGG-QTQDKIPQFGQQTP---- 255 (294)
T ss_pred --------------CcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccC-CCHHHHHHHhccCC----
Confidence 1234999999999999999886 4899999999999998532111 01112222222111
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+..++|+|+++.+++...
T Consensus 256 -~~r~~~pedva~~~~fL~s~~ 276 (294)
T PRK07985 256 -MKRAGQPAELAPVYVYLASQE 276 (294)
T ss_pred -CCCCCCHHHHHHHHHhhhChh
Confidence 224678999999999998753
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-23 Score=175.51 Aligned_cols=218 Identities=20% Similarity=0.223 Sum_probs=153.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
+|+++||||+|+||+++++.|+++|++|++++|+..+ .......... ...++.++.+|+++++++.++++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRA--LGVEVIFFPADVADLSAHEAMLDAAQAAWG 79 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999986432 2222122111 12468899999999988776654
Q ss_pred CccEEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHHhcC----CC-----ccEEEEecchhhhccCCCCCC
Q 020266 81 GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKF----PS-----IKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 ~~d~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~-----~~~~v~~SS~~~~~~~~~~~~ 144 (328)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+. .+ .+++|++||..+.++..
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---- 155 (256)
T PRK12745 80 RIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSP---- 155 (256)
T ss_pred CCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCC----
Confidence 57999999986321 122344567899999999998887542 11 46799999976655321
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
..+.|+.+|.+.|.+++.++.+ +|++++++|||.+.++...... .........+..
T Consensus 156 ------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~---~~~~~~~~~~~~ 214 (256)
T PRK12745 156 ------------------NRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVT---AKYDALIAKGLV 214 (256)
T ss_pred ------------------CCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccc---hhHHhhhhhcCC
Confidence 1245999999999999999875 6899999999999987543221 111111112111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....+.+++|+++++..++.... ..| .|++.+
T Consensus 215 ----~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~g 249 (256)
T PRK12745 215 ----PMPRWGEPEDVARAVAALASGDLPYSTGQAIHVDG 249 (256)
T ss_pred ----CcCCCcCHHHHHHHHHHHhCCcccccCCCEEEECC
Confidence 12357799999999998886532 245 677765
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=173.63 Aligned_cols=221 Identities=18% Similarity=0.121 Sum_probs=152.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
|++++++||||+|+||++++++|+++|++|+++ .|+..+...+...... .+.++.++.+|++|++++.++++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEA--LGRKALAVKANVGDVEKIKEMFAQIDEE 79 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999999998764 6665443333222221 13468889999999998877765
Q ss_pred --CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+||..... ..+.+...+++|+.++.++++++.+. .+.++||++||.....+.+
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 149 (250)
T PRK08063 80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLE---------- 149 (250)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCC----------
Confidence 579999999863211 11223346789999999999988763 1446999999975443110
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.|.+++.++.+ .++++++++|+.+.++..... ..............+ .
T Consensus 150 ------------~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~-~~~~~~~~~~~~~~~-----~ 211 (250)
T PRK08063 150 ------------NYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHF-PNREELLEDARAKTP-----A 211 (250)
T ss_pred ------------CccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhc-cCchHHHHHHhcCCC-----C
Confidence 1245999999999999998875 589999999999987753221 111112222211111 1
Q ss_pred ccceeHHHHHHHHHHhhcCCCC--CC-cEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~ 257 (328)
..+++++|+|+++..++.++.. .| .+++.+
T Consensus 212 ~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 244 (250)
T PRK08063 212 GRMVEPEDVANAVLFLCSPEADMIRGQTIIVDG 244 (250)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence 2478999999999999976432 45 455544
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-23 Score=176.30 Aligned_cols=211 Identities=17% Similarity=0.114 Sum_probs=151.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+||||||+|+||++++++|+++|++|++++|++.+.+.+....... ..++.++.+|++|++++.++++
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--GRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999876544443333211 2468899999999988776664
Q ss_pred -CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+|||+|+.... ...+.+...+++|+.++..+++++.+.. ..++||++||.....+.+
T Consensus 81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~----------- 149 (258)
T PRK07890 81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQP----------- 149 (258)
T ss_pred CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCCC-----------
Confidence 57999999986322 1223455778999999999999987531 225899999975443111
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc--------chHHHHHHHHhCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLIKGA 220 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--------~~~~~~~~~~~~~ 220 (328)
....|+.+|.+.+.+++.++.+. +++++++|||.+++|....... ............
T Consensus 150 -----------~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (258)
T PRK07890 150 -----------KYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN- 217 (258)
T ss_pred -----------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc-
Confidence 12459999999999999998753 8999999999999985321100 001111111111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
.....+.+++|++++++.++.+
T Consensus 218 ----~~~~~~~~~~dva~a~~~l~~~ 239 (258)
T PRK07890 218 ----SDLKRLPTDDEVASAVLFLASD 239 (258)
T ss_pred ----CCccccCCHHHHHHHHHHHcCH
Confidence 1123478999999999999875
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=171.63 Aligned_cols=223 Identities=15% Similarity=0.152 Sum_probs=159.3
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|+.+.++.+|++|||||+|+||++++++|+++|++|++++|+.++...+...+... ..++..+.+|++|++++.++++
T Consensus 1 ~~~~~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 1 MNDLFSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE--GIKAHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred CcccccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEecCCCCHHHHHHHHH
Confidence 66666677899999999999999999999999999999999866554433332221 2467788999999998877664
Q ss_pred -------CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCC
Q 020266 81 -------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 -------~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
.+|+|||+||... ....+.+...+++|+.++.++++++.+. .+.++||++||.....+.+
T Consensus 79 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----- 153 (254)
T PRK08085 79 HIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRD----- 153 (254)
T ss_pred HHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCCC-----
Confidence 4799999998632 1223445578899999999998877653 1446899999975443211
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
....|+.+|.+.+.+++.++.+. |+++++++||.+.++....... ...+........
T Consensus 154 -----------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~-~~~~~~~~~~~~-- 213 (254)
T PRK08085 154 -----------------TITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVE-DEAFTAWLCKRT-- 213 (254)
T ss_pred -----------------CCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhcc-CHHHHHHHHhcC--
Confidence 12459999999999999998764 8999999999999885322111 111111222211
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC--CCCCcE
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVP--SANGRY 253 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~ 253 (328)
| ...+..++|++.++.+++... ...|..
T Consensus 214 -p--~~~~~~~~~va~~~~~l~~~~~~~i~G~~ 243 (254)
T PRK08085 214 -P--AARWGDPQELIGAAVFLSSKASDFVNGHL 243 (254)
T ss_pred -C--CCCCcCHHHHHHHHHHHhCccccCCcCCE
Confidence 1 234779999999999998753 235543
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-23 Score=165.07 Aligned_cols=299 Identities=17% Similarity=0.152 Sum_probs=208.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC--hhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhC--Cc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVD--GC 82 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~--~~ 82 (328)
.|..||||-||.=|+.|++.|+..|++|.++.|..+. ....+++..-. .....++.+.||++|...+.+++. .+
T Consensus 28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ikP 107 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIKP 107 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccCc
Confidence 3467999999999999999999999999999885443 34445554322 234578899999999999999888 67
Q ss_pred cEEEEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020266 83 DGVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (328)
Q Consensus 83 d~vih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 159 (328)
+-|+|+|+...- ...+..+...++...|+.+|+++.+... ..-||-..|| +..||. .+..|-.|.+|..|
T Consensus 108 tEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAst-SElyGk----v~e~PQsE~TPFyP-- 180 (376)
T KOG1372|consen 108 TEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQAST-SELYGK----VQEIPQSETTPFYP-- 180 (376)
T ss_pred hhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEeccc-Hhhccc----ccCCCcccCCCCCC--
Confidence 999999987321 1122333567788999999999988751 1236777787 578863 35567778877665
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC--CcchHHHHHHHHhCCC---CCC--CCCcccee
Q 020266 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT--LNTSAAAVLSLIKGAQ---TYP--NVTFGWVN 232 (328)
Q Consensus 160 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~---~~~--~~~~~~v~ 232 (328)
.++|+.+|..+-.++-.+.+.+++-.+-=-.++--.|..... .+.+..-+.++.-|.. .+| +..|||-|
T Consensus 181 ----RSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGh 256 (376)
T KOG1372|consen 181 ----RSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGH 256 (376)
T ss_pred ----CChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccch
Confidence 478999999999998888887776544333334444543221 1122223333333331 224 67899999
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEecCccCHHHHHHHHHHhCCCC------CCC--CC---------CCCC--CCCC-Cce
Q 020266 233 VKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAF------QLP--EK---------CADD--KPHV-PTY 292 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~------~~~--~~---------~~~~--~~~~-~~~ 292 (328)
..|-+++++..+++.+........++..|++|+++.....+|.. .+. .. ..+. .|.. ..+
T Consensus 257 A~dYVEAMW~mLQ~d~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd~L 336 (376)
T KOG1372|consen 257 AGDYVEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVDTL 336 (376)
T ss_pred hHHHHHHHHHHHhcCCCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccCcchhhhh
Confidence 99999999999998765553345579999999999888877631 000 00 0111 1111 134
Q ss_pred ecchHHH-HhcCCc-cccHHHHHHHHHH
Q 020266 293 QVLKEKV-KNLGIE-FIPVEVSLKETIE 318 (328)
Q Consensus 293 ~~~~~k~-~~lg~~-~~~~~~~l~~~~~ 318 (328)
+-|.+|+ +.|||+ +..+.+-+++|+.
T Consensus 337 qGdasKAk~~LgW~pkv~f~eLVkeMv~ 364 (376)
T KOG1372|consen 337 QGDASKAKKTLGWKPKVTFPELVKEMVA 364 (376)
T ss_pred cCChHHHHHhhCCCCccCHHHHHHHHHH
Confidence 5689999 999999 9999999999986
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-23 Score=183.20 Aligned_cols=263 Identities=21% Similarity=0.254 Sum_probs=181.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC---CeEEEEecCCCChhh---hhhhh-----h----c-cCCCCcEEEEEccCC
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKK---TRHLL-----A----L-DGASERLQLFKANLL 70 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~---~~~~~-----~----~-~~~~~~~~~~~~Dl~ 70 (328)
+++|+|||||||||+|.-++++|+..- .+++.+.|....... +.... + . .....++..+.||++
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 468999999999999999999999853 478888886544322 22111 0 0 112367889999998
Q ss_pred CcC------chHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCC
Q 020266 71 EEG------SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 71 ~~~------~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
+++ ++..+.+++|+|||+||.+... ++......+|+.|++++++.|++..+.+-+||+||+.+-.... ..
T Consensus 90 ~~~LGis~~D~~~l~~eV~ivih~AAtvrFd--e~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~--~i 165 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEVNIVIHSAATVRFD--EPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVG--HI 165 (467)
T ss_pred CcccCCChHHHHHHHhcCCEEEEeeeeeccc--hhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecccc--cc
Confidence 764 4566777999999999987664 3444778899999999999999987888999999975442111 11
Q ss_pred CCccccCCC--C------------------CCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCC
Q 020266 145 PDVVVDETW--F------------------SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP 204 (328)
Q Consensus 145 ~~~~~~E~~--~------------------~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~ 204 (328)
.+.+..+.. . ..+......++.|..+|..+|.++.+.+. +++++|+||+.|......+
T Consensus 166 ~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~st~~EP 243 (467)
T KOG1221|consen 166 EEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIITSTYKEP 243 (467)
T ss_pred cccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCceeccccCC
Confidence 111111111 0 01112233567899999999999998764 7999999999999875544
Q ss_pred CCcch------HHHHHHHHhCC-C-C--CCCCCccceeHHHHHHHHHHhhcC----CCC--CCcEEEec---CccCHHHH
Q 020266 205 TLNTS------AAAVLSLIKGA-Q-T--YPNVTFGWVNVKDVANAHIQAFEV----PSA--NGRYCLVE---RVSHYSEI 265 (328)
Q Consensus 205 ~~~~~------~~~~~~~~~~~-~-~--~~~~~~~~v~v~D~a~~~~~~~~~----~~~--~g~~~~~~---~~~~~~el 265 (328)
.-+++ ...+....+|. . . -++...++|.+|.++.+++.+.-. .+. .-+||+++ .+++++++
T Consensus 244 ~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~ 323 (467)
T KOG1221|consen 244 FPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDF 323 (467)
T ss_pred CCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHH
Confidence 32211 11222222332 1 1 157788999999999999876621 111 22899863 68999999
Q ss_pred HHHHHHhCCC
Q 020266 266 VNIIRELYPA 275 (328)
Q Consensus 266 ~~~i~~~~~~ 275 (328)
.+...+....
T Consensus 324 ~e~~~~~~~~ 333 (467)
T KOG1221|consen 324 IELALRYFEK 333 (467)
T ss_pred HHHHHHhccc
Confidence 9999998754
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=178.06 Aligned_cols=213 Identities=21% Similarity=0.189 Sum_probs=150.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
++++|+||||||+||++++++|+++|++|++++|+..+... ..+++++++|++|++++.++++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 35789999999999999999999999999999998654322 2367899999999998888776
Q ss_pred CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|+||||||..... ..+.+...+++|+.++.++++++. +. +.+++|++||.+++.+.+
T Consensus 73 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~~----------- 140 (270)
T PRK06179 73 RIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQ-GSGRIINISSVLGFLPAP----------- 140 (270)
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEECCccccCCCC-----------
Confidence 479999999974321 223345788999999999988853 33 567999999975543211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCc---chH--HHHHHHHhCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN---TSA--AAVLSLIKGAQTY 223 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~---~~~--~~~~~~~~~~~~~ 223 (328)
....|+.+|...+.+++.++.+ .|+++++++||.+.++....... ... ......... ..
T Consensus 141 -----------~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 207 (270)
T PRK06179 141 -----------YMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSK--AV 207 (270)
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHH--HH
Confidence 1245999999999999988765 58999999999998874322110 010 000000000 00
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCCCCcEEE
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPSANGRYCL 255 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~ 255 (328)
.........++|+|+.++.++..+...-.|..
T Consensus 208 ~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~ 239 (270)
T PRK06179 208 AKAVKKADAPEVVADTVVKAALGPWPKMRYTA 239 (270)
T ss_pred HhccccCCCHHHHHHHHHHHHcCCCCCeeEec
Confidence 01112346889999999999987643345644
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=170.88 Aligned_cols=219 Identities=16% Similarity=0.132 Sum_probs=153.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhh-ccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|+++||||+|+||++++++|+++|++|++++|.... ......... ......++.++.+|++|++++.++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV 82 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 3457899999999999999999999999999998774322 222222111 11123478899999999988877663
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh-----cCCCccEEEEecchhhhccCCCCCCCC
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA-----KFPSIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~-----~~~~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++. +. +.+++|++||.+.+++..
T Consensus 83 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~------ 155 (249)
T PRK12827 83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRAR-RGGRIVNIASVAGVRGNR------ 155 (249)
T ss_pred HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-CCeEEEEECCchhcCCCC------
Confidence 58999999987432 1122344678899999999999987 33 557899999976665311
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.+|.+.+.+++.++.+. +++++++|||.+.++...... .. .......+
T Consensus 156 ----------------~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~--~~---~~~~~~~~-- 212 (249)
T PRK12827 156 ----------------GQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAA--PT---EHLLNPVP-- 212 (249)
T ss_pred ----------------CCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccc--hH---HHHHhhCC--
Confidence 12449999999999999887753 899999999999998643321 11 11222111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC--CC-cEEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~ 257 (328)
...+.+++|+++++..++..... .| .+++.+
T Consensus 213 ---~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~ 246 (249)
T PRK12827 213 ---VQRLGEPDEVAALVAFLVSDAASYVTGQVIPVDG 246 (249)
T ss_pred ---CcCCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence 12256899999999998865322 35 445543
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=171.98 Aligned_cols=222 Identities=16% Similarity=0.111 Sum_probs=156.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|++|||||+|+||++++++|+++|++|++++|+.+....+....... ..++.++.+|++|.+++.++++
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK--GGNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999876554443333221 2468899999999988877665
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|+|||+|+.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.+++++.+
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~----------- 147 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSS----------- 147 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCC-----------
Confidence 58999999986321 112223466889999999998887531 1457899999976655311
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc---chHHHHHHHHhCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN---TSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+++.++.+. +++++++||+.++++....... .............+
T Consensus 148 -----------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 212 (250)
T TIGR03206 148 -----------GEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIP---- 212 (250)
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCC----
Confidence 12449999999999999988764 8999999999999884221110 01112222222211
Q ss_pred CCccceeHHHHHHHHHHhhcCCCC--CC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~ 257 (328)
...+..++|+|+++..++..... .| .+++.+
T Consensus 213 -~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~ 246 (250)
T TIGR03206 213 -LGRLGQPDDLPGAILFFSSDDASFITGQVLSVSG 246 (250)
T ss_pred -ccCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCC
Confidence 12356889999999998875432 45 555544
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=170.71 Aligned_cols=211 Identities=21% Similarity=0.186 Sum_probs=152.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|++++.......+.. ...++.++.+|++|++++.++++
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA--AGGRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35589999999999999999999999999999999886655443332221 12468899999999998877764
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+|||+||.... ...+.+...++.|+.++.++++++.+. .+.+++|++||.....+.+
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 151 (250)
T PRK12939 82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAP---------- 151 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCC----------
Confidence 58999999986332 122234466789999999999987653 1345899999976544211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.+ .++++++++||.+.++....... ..+....... ...
T Consensus 152 ------------~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~-----~~~ 212 (250)
T PRK12939 152 ------------KLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA--DERHAYYLKG-----RAL 212 (250)
T ss_pred ------------CcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC--hHHHHHHHhc-----CCC
Confidence 1234999999999999988765 47999999999988775322111 1222222222 223
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 020266 228 FGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~ 247 (328)
..+++++|++++++.++...
T Consensus 213 ~~~~~~~dva~~~~~l~~~~ 232 (250)
T PRK12939 213 ERLQVPDDVAGAVLFLLSDA 232 (250)
T ss_pred CCCCCHHHHHHHHHHHhCcc
Confidence 45789999999999999764
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=174.41 Aligned_cols=226 Identities=18% Similarity=0.117 Sum_probs=157.2
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|+++||||+|+||+++++.|+++|++|++++|+.+..+.+...+.......++.++++|++|++++.++++
T Consensus 3 ~~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 3 NRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999876555544433321123468899999999988877765
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|++|||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.....+.+
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 153 (260)
T PRK07063 83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIP--------- 153 (260)
T ss_pred HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCCC---------
Confidence 68999999986321 123345677889999999999987643 1446899999975443211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcc--hHHHHHHHHhCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIKGAQTYP 224 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~--~~~~~~~~~~~~~~~~ 224 (328)
....|+.+|.+.+.+++.++.+. |+++++++||.+-.+........ ............. |
T Consensus 154 -------------~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~--~ 218 (260)
T PRK07063 154 -------------GCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQ--P 218 (260)
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcC--C
Confidence 12349999999999999998764 79999999999877642211000 0011111111111 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCCcEEEe
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~ 256 (328)
...+..++|++.++++++.+.. ..|.....
T Consensus 219 --~~r~~~~~~va~~~~fl~s~~~~~itG~~i~v 250 (260)
T PRK07063 219 --MKRIGRPEEVAMTAVFLASDEAPFINATCITI 250 (260)
T ss_pred --CCCCCCHHHHHHHHHHHcCccccccCCcEEEE
Confidence 1236689999999999987542 35544333
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=172.54 Aligned_cols=208 Identities=14% Similarity=0.057 Sum_probs=151.3
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
||.|. +++|++|||||+|+||++++++|+++|++|++++|+. .. . ....+.++++|+++++++.++++
T Consensus 1 ~~~~~-~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--~~---~------~~~~~~~~~~D~~~~~~~~~~~~ 68 (252)
T PRK08220 1 MNAMD-FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--LT---Q------EDYPFATFVLDVSDAAAVAQVCQ 68 (252)
T ss_pred CCccC-CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--hh---h------cCCceEEEEecCCCHHHHHHHHH
Confidence 55554 5678999999999999999999999999999999975 10 0 12468889999999998888765
Q ss_pred -------CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCC
Q 020266 81 -------GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 -------~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
.+|+|||+|+..... ..+.+...+++|+.++.++++++.+. .+.+++|++||.....+..
T Consensus 69 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~~----- 143 (252)
T PRK08220 69 RLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPRI----- 143 (252)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCCC-----
Confidence 479999999874321 22345577899999999999987642 1346899999965433110
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcch--HH-----HHHH
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTS--AA-----AVLS 215 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~--~~-----~~~~ 215 (328)
..+.|+.+|.+.+.+++.++.+ +++++++++|+.+++|......... .. ....
T Consensus 144 -----------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 206 (252)
T PRK08220 144 -----------------GMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQ 206 (252)
T ss_pred -----------------CCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHH
Confidence 1245999999999999999886 6899999999999998532211000 00 0111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
... ......+++++|+|++++.++...
T Consensus 207 ~~~-----~~~~~~~~~~~dva~~~~~l~~~~ 233 (252)
T PRK08220 207 FKL-----GIPLGKIARPQEIANAVLFLASDL 233 (252)
T ss_pred Hhh-----cCCCcccCCHHHHHHHHHHHhcch
Confidence 111 112346899999999999998753
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=175.01 Aligned_cols=230 Identities=17% Similarity=0.180 Sum_probs=159.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
++++++++||||+|+||++++++|+++|++|++++|++++. .+...... ...++.++.+|+++++++.++++
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRA--LQPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 36688999999999999999999999999999999987654 22222211 13468899999999998877765
Q ss_pred --CccEEEEccCCCCCC----CCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 --GCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~~~~----~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
.+|+|||+||..... ..+.+...+++|+.++.++++++.+.. ..++||++||..+.++.+
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~------------ 148 (258)
T PRK08628 81 FGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQG------------ 148 (258)
T ss_pred cCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCC------------
Confidence 579999999863211 113455778899999999988876531 236899999976655211
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCc---chHHHHHHHHhCCCCCCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN---TSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|.+.+.+++.++.+ .+++++.++||.+++|....... ........+....+ ++
T Consensus 149 ----------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 215 (258)
T PRK08628 149 ----------GTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIP-LG-- 215 (258)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcCC-cc--
Confidence 1245999999999999998764 48999999999999985321100 00111112222111 11
Q ss_pred CccceeHHHHHHHHHHhhcCC--CCCC-cEEEecCccCHHH
Q 020266 227 TFGWVNVKDVANAHIQAFEVP--SANG-RYCLVERVSHYSE 264 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~~~~~~~e 264 (328)
..++.++|+|+++++++... ...| .+.+.+....+++
T Consensus 216 -~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~~~~ 255 (258)
T PRK08628 216 -HRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGYVHLDR 255 (258)
T ss_pred -ccCCCHHHHHHHHHHHhChhhccccCceEEecCCcccccc
Confidence 24788999999999999764 2345 4455444444443
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=171.24 Aligned_cols=213 Identities=18% Similarity=0.124 Sum_probs=151.7
Q ss_pred Ccccc-cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 1 MSSVA-AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 1 ~~~~~-~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
||..+ ++++|+++||||+|+||+++++.|+++|++|++++|++.+...+.... ..++.++.+|+++++++.+++
T Consensus 1 ~~~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~ 75 (255)
T PRK05717 1 MSEPNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGV 75 (255)
T ss_pred CCCCCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHH
Confidence 44433 456899999999999999999999999999999998765443322211 236788999999998876554
Q ss_pred C-------CccEEEEccCCCCCC-------CCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCC
Q 020266 80 D-------GCDGVCHTASPFYHD-------AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPR 143 (328)
Q Consensus 80 ~-------~~d~vih~a~~~~~~-------~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~ 143 (328)
+ .+|+||||||..... ..+.+...+++|+.++.++++++.+.. ..+++|++||.+..++.+
T Consensus 76 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~--- 152 (255)
T PRK05717 76 AEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEP--- 152 (255)
T ss_pred HHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCC---
Confidence 3 479999999864321 122345788999999999999987531 236899999976555211
Q ss_pred CCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 144 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
..+.|+.+|.+.+.+++.++.++ ++++++++||.+.++...... .... .......
T Consensus 153 -------------------~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~--~~~~-~~~~~~~- 209 (255)
T PRK05717 153 -------------------DTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRR--AEPL-SEADHAQ- 209 (255)
T ss_pred -------------------CCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCcccccc--chHH-HHHHhhc-
Confidence 12449999999999999998875 589999999999997532111 1111 1111111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.+ ...+.+++|++.++..++...
T Consensus 210 -~~--~~~~~~~~~va~~~~~l~~~~ 232 (255)
T PRK05717 210 -HP--AGRVGTVEDVAAMVAWLLSRQ 232 (255)
T ss_pred -CC--CCCCcCHHHHHHHHHHHcCch
Confidence 01 124779999999999888653
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-22 Score=171.04 Aligned_cols=212 Identities=16% Similarity=0.169 Sum_probs=151.3
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|+++||||+|+||+++++.|+++|++|++++|+.++...+.... ..++.++++|++|++++.++++
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999876544433322 2468899999999988877665
Q ss_pred ---CccEEEEccCCCCC----CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 ---GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ---~~d~vih~a~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|++|||||.... ...+.+.+.+++|+.++.++++++.+.. +.+++|++||.+..++.+
T Consensus 77 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~----------- 145 (261)
T PRK08265 77 RFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQT----------- 145 (261)
T ss_pred HhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCC-----------
Confidence 57999999986321 2233455778899999999998876531 346899999976655321
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+++.++.+. |+++++|+||.+.++.................. ...+ ..
T Consensus 146 -----------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~--~~~p--~~ 210 (261)
T PRK08265 146 -----------GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAA--PFHL--LG 210 (261)
T ss_pred -----------CCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhc--ccCC--CC
Confidence 12449999999999999988764 799999999998776422110000011111111 1111 22
Q ss_pred cceeHHHHHHHHHHhhcCC
Q 020266 229 GWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~ 247 (328)
.+..++|+|+++.+++...
T Consensus 211 r~~~p~dva~~~~~l~s~~ 229 (261)
T PRK08265 211 RVGDPEEVAQVVAFLCSDA 229 (261)
T ss_pred CccCHHHHHHHHHHHcCcc
Confidence 3568999999999999753
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=169.88 Aligned_cols=203 Identities=14% Similarity=0.111 Sum_probs=150.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++++++||||+|+||++++++|+++|++|++++|+..+.......... ...++.++.+|+++++++.++++
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEA--YGVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999987654443322221 23478899999999998877775
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||...+++.+
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~---------- 151 (239)
T PRK07666 82 LGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAA---------- 151 (239)
T ss_pred cCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCC----------
Confidence 68999999986322 112234567899999999998887642 1457899999976655311
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.+ .|++++++|||.+.++..... ....+ ..
T Consensus 152 ------------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~---------~~~~~------~~ 204 (239)
T PRK07666 152 ------------VTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL---------GLTDG------NP 204 (239)
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc---------ccccc------CC
Confidence 1234999999999999888764 489999999999988742210 00011 11
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 020266 228 FGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~ 247 (328)
..++.++|+|+.+..++..+
T Consensus 205 ~~~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 205 DKVMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred CCCCCHHHHHHHHHHHHhCC
Confidence 24678999999999999875
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=170.22 Aligned_cols=209 Identities=20% Similarity=0.182 Sum_probs=150.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+||||||||+||+++++.|+++|++|++++|++.+......... ....+.+.+|++|.+++.++++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVP----ADALRIGGIDLVDPQAARRAVDEVNRQF 80 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHh----hcCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999998765433222211 1356788899999988777665
Q ss_pred -CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+|||+++..... ..+.+.+.++.|+.++.++++++.+. .+.+++|++||.+.+.+.+
T Consensus 81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 149 (239)
T PRK12828 81 GRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGP----------- 149 (239)
T ss_pred CCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCCC-----------
Confidence 589999999864321 12223456789999999998887532 2567999999976543210
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+++.++.+ .+++++++||+.++++...... + .....
T Consensus 150 -----------~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~--------------~--~~~~~ 202 (239)
T PRK12828 150 -----------GMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADM--------------P--DADFS 202 (239)
T ss_pred -----------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcC--------------C--chhhh
Confidence 1244999999999999887764 4899999999999988422110 0 11123
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.+++++|+|+++.+++.+.. ..| .+++.+
T Consensus 203 ~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g 234 (239)
T PRK12828 203 RWVTPEQIAAVIAFLLSDEAQAITGASIPVDG 234 (239)
T ss_pred cCCCHHHHHHHHHHHhCcccccccceEEEecC
Confidence 38999999999999998643 245 445544
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-22 Score=166.71 Aligned_cols=206 Identities=17% Similarity=0.092 Sum_probs=145.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---CccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~v 85 (328)
||+++||||+|+||+++++.|+++ ++|++++|+..+...+... .+.+.++.+|++|++++.++++ ++|+|
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 75 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAE------LPGATPFPVDLTDPEAIAAAVEQLGRLDVL 75 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHH------hccceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence 578999999999999999999999 9999999986544332221 1357889999999999988886 58999
Q ss_pred EEccCCCCCCC-----CCcchhhhhHHHHHHHHHHHH----HhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020266 86 CHTASPFYHDA-----KDPQVELLDPAVKGTLNVLNS----CAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (328)
Q Consensus 86 ih~a~~~~~~~-----~~~~~~~~~~N~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 156 (328)
||+++...... .+.+...+++|+.+..++.++ +++. .+++|++||..++.+.+
T Consensus 76 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~v~~ss~~~~~~~~---------------- 137 (227)
T PRK08219 76 VHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA--HGHVVFINSGAGLRANP---------------- 137 (227)
T ss_pred EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEcchHhcCcCC----------------
Confidence 99998743211 122345578888885555444 4443 36899999976544211
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHhc-C-ccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHH
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEK-S-IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVK 234 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 234 (328)
+...|+.+|...+.+++.++.+. + +++++++|+.+.++.... . ... .+. ......+++++
T Consensus 138 ------~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~-------~-~~~-~~~---~~~~~~~~~~~ 199 (227)
T PRK08219 138 ------GWGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQRG-------L-VAQ-EGG---EYDPERYLRPE 199 (227)
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhhh-------h-hhh-hcc---ccCCCCCCCHH
Confidence 12449999999999998887653 4 899999998776653211 0 000 111 11234689999
Q ss_pred HHHHHHHHhhcCCCCCCcEEEec
Q 020266 235 DVANAHIQAFEVPSANGRYCLVE 257 (328)
Q Consensus 235 D~a~~~~~~~~~~~~~g~~~~~~ 257 (328)
|++++++.+++++....+|++.-
T Consensus 200 dva~~~~~~l~~~~~~~~~~~~~ 222 (227)
T PRK08219 200 TVAKAVRFAVDAPPDAHITEVVV 222 (227)
T ss_pred HHHHHHHHHHcCCCCCccceEEE
Confidence 99999999998865444777653
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-22 Score=171.48 Aligned_cols=227 Identities=17% Similarity=0.128 Sum_probs=155.9
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|.+|..+++|+++||||+|+||+++++.|+++|++|++++|+.+............ ..++.++.+|+++++++.++++
T Consensus 1 ~~~~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 1 MTTMFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA--GPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred CCccccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHH
Confidence 66666778899999999999999999999999999999999866544332222221 2356788999999988877664
Q ss_pred -------CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCC
Q 020266 81 -------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 -------~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
.+|+|||+|+... ....+.+...+++|+.++.++++++.+.. ..+++|++||.....+.+
T Consensus 79 ~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~~------ 152 (264)
T PRK07576 79 QIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPMP------ 152 (264)
T ss_pred HHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCCC------
Confidence 4799999997522 11223344678899999999999887531 225899999975443110
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.+|.+.+.+++.++.+ .++++++++|+.+.+........ ............ .
T Consensus 153 ----------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~-~~~~~~~~~~~~--~ 213 (264)
T PRK07576 153 ----------------MQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLA-PSPELQAAVAQS--V 213 (264)
T ss_pred ----------------CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcc-cCHHHHHHHHhc--C
Confidence 1245999999999999998776 47999999999887532110000 001111111111 1
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEe
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~ 256 (328)
+ ...+..++|+|++++.++..+. ..|.+...
T Consensus 214 ~--~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~ 246 (264)
T PRK07576 214 P--LKRNGTKQDIANAALFLASDMASYITGVVLPV 246 (264)
T ss_pred C--CCCCCCHHHHHHHHHHHcChhhcCccCCEEEE
Confidence 1 2346789999999999997543 25644333
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-22 Score=170.73 Aligned_cols=224 Identities=16% Similarity=0.078 Sum_probs=151.0
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|++|||||+|+||+++++.|+++|++|++++|+ ++...+...+.. ...++..+.+|+++++++.++++
T Consensus 2 ~~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (272)
T PRK08589 2 KRLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS--NGGKAKAYHVDISDEQQVKDFASEIKE 78 (272)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999998 444333222221 12468899999999988776665
Q ss_pred ---CccEEEEccCCCCC---C---CCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFYH---D---AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~~---~---~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|++|||||.... . ..+.+...+++|+.++..+++++.+.. ..+++|++||.+...+.+
T Consensus 79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 149 (272)
T PRK08589 79 QFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAADL--------- 149 (272)
T ss_pred HcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcCCCC---------
Confidence 47999999986421 1 122345678899999988888765531 126899999976544211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|.+.+.+++.++.++ |++++++.||.|..+..........................
T Consensus 150 -------------~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (272)
T PRK08589 150 -------------YRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWMTP 216 (272)
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhccCC
Confidence 12449999999999999998764 79999999999988743211100000000111100000011
Q ss_pred CccceeHHHHHHHHHHhhcCC--CCCCcE
Q 020266 227 TFGWVNVKDVANAHIQAFEVP--SANGRY 253 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~--~~~g~~ 253 (328)
...+..++|+++++++++... ...|..
T Consensus 217 ~~~~~~~~~va~~~~~l~s~~~~~~~G~~ 245 (272)
T PRK08589 217 LGRLGKPEEVAKLVVFLASDDSSFITGET 245 (272)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcCcCCCE
Confidence 223678999999999998753 235533
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=169.12 Aligned_cols=217 Identities=18% Similarity=0.138 Sum_probs=152.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.++|++|||||+|+||+++++.|+++|++|+++.+.. +....+...... ...++.++.+|++|++++.++++
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 84 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRA--LGRRAVALQADLADEAEVRALVARASAA 84 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999998887643 222222222211 13468889999999998877765
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+||||||.... ...+.+...+++|+.++.++++++.+.. ..+++|+++|......
T Consensus 85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~------------ 152 (258)
T PRK09134 85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNL------------ 152 (258)
T ss_pred cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCC------------
Confidence 47999999986322 1223445778999999999999887642 2357888888533220
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
.| ....|+.+|.+.|.+.+.++.+. ++++++++||.+..+.... ...+.....+.+ ..
T Consensus 153 -----~p-----~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~~-----~~~~~~~~~~~~-----~~ 212 (258)
T PRK09134 153 -----NP-----DFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQS-----PEDFARQHAATP-----LG 212 (258)
T ss_pred -----CC-----CchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcccC-----hHHHHHHHhcCC-----CC
Confidence 00 12459999999999999998764 4899999999887653211 122222222221 11
Q ss_pred cceeHHHHHHHHHHhhcCCCCCC-cEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~ 257 (328)
...+++|+|++++.+++.+...| .|++.+
T Consensus 213 ~~~~~~d~a~~~~~~~~~~~~~g~~~~i~g 242 (258)
T PRK09134 213 RGSTPEEIAAAVRYLLDAPSVTGQMIAVDG 242 (258)
T ss_pred CCcCHHHHHHHHHHHhcCCCcCCCEEEECC
Confidence 24789999999999999776667 556654
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-22 Score=167.29 Aligned_cols=207 Identities=19% Similarity=0.227 Sum_probs=159.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++++++|||||+.||..+++.|+++|++|+.+.|+.++...+...+.... .-.+.+++.|+++++++..+.+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHhc
Confidence 4568899999999999999999999999999999999999888777665443 3468899999999998887764
Q ss_pred --CccEEEEccCC-----CCCCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~-----~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|++|||||. +.....+...+.+++|+.++..|..+..+. .+.+++|.++|.+++...+
T Consensus 82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p---------- 151 (265)
T COG0300 82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTP---------- 151 (265)
T ss_pred CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCc----------
Confidence 58999999986 223334445588999999999988877653 2557899999987655211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC-CC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP-NV 226 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 226 (328)
..+.|+.||...-.+.+..+.| .|++++.|-||.+..+.... .+..... ..
T Consensus 152 ------------~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~-------------~~~~~~~~~~ 206 (265)
T COG0300 152 ------------YMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDA-------------KGSDVYLLSP 206 (265)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccccc-------------cccccccccc
Confidence 2356999999988888888776 37999999999988875431 1111111 12
Q ss_pred CccceeHHHHHHHHHHhhcCCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
.+-++.++|+|+..+.++.+.+
T Consensus 207 ~~~~~~~~~va~~~~~~l~~~k 228 (265)
T COG0300 207 GELVLSPEDVAEAALKALEKGK 228 (265)
T ss_pred hhhccCHHHHHHHHHHHHhcCC
Confidence 3447899999999999998753
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=168.80 Aligned_cols=214 Identities=17% Similarity=0.157 Sum_probs=151.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|++|||||+|+||+++++.|+++|++|++++|+.++.+.+...+.. ...++.++.+|++|++++.++++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA--LGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999976554443332221 12467889999999988866554
Q ss_pred --CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|+|||+||... ....+.+...+++|+.++.++++++.+. .+.++||++||.+.+++.+.. .
T Consensus 87 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~------~ 160 (259)
T PRK08213 87 FGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPE------V 160 (259)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCcc------c
Confidence 5799999998632 1122334467889999999999987543 245689999997666532100 0
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
.+...|+.+|...|.+++.++.++ ++++++++|+.+-++..... ...+......+.+
T Consensus 161 ------------~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~---~~~~~~~~~~~~~----- 220 (259)
T PRK08213 161 ------------MDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGT---LERLGEDLLAHTP----- 220 (259)
T ss_pred ------------cCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhh---hHHHHHHHHhcCC-----
Confidence 012459999999999999998764 79999999998877643221 2233333333222
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+...+|++.++.+++...
T Consensus 221 ~~~~~~~~~va~~~~~l~~~~ 241 (259)
T PRK08213 221 LGRLGDDEDLKGAALLLASDA 241 (259)
T ss_pred CCCCcCHHHHHHHHHHHhCcc
Confidence 123567999999998888654
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-22 Score=175.13 Aligned_cols=193 Identities=17% Similarity=0.149 Sum_probs=133.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||.++++.|+++|++|++++|+.++...+...+.. ...++.++.+|++|.+++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI--PPDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc--cCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 3478999999999999999999999999999999987655443333221 13468899999999998887765
Q ss_pred -CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC---C--ccEEEEecchhhhccCCCCCC-CCc
Q 020266 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---S--IKRVVLTSSMAAVLNTGKPRT-PDV 147 (328)
Q Consensus 81 -~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~~~~v~~SS~~~~~~~~~~~~-~~~ 147 (328)
++|+||||||.... ...+.++..+++|+.|+.++++++.+.. + .+++|++||.+..++...... ...
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~ 161 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPA 161 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCC
Confidence 48999999996321 1223455778999999999988876531 1 358999999765442100000 000
Q ss_pred cccCCC-------CCCc-----cccccCCchhhhhhHHHHHHHHHHHHhc----CccEEEEcCCcccCCC
Q 020266 148 VVDETW-------FSDP-----EVCKQSELWYPLSKTLAEDAAWKFAKEK----SIDLVTINPAMVIGPL 201 (328)
Q Consensus 148 ~~~E~~-------~~~~-----~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~G~~ 201 (328)
+.+.++ +..+ ..+..+.+.|+.||++.+.+.+.+++++ |++++++|||.|++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 162 PADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred ccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 000000 0000 0011234679999999988888888764 7999999999998643
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=174.01 Aligned_cols=216 Identities=18% Similarity=0.175 Sum_probs=145.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------- 80 (328)
+|+|+||||+|+||+++++.|+++|++|++++|+++....+.. .++.++.+|++|++++.++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 6789999999999999999999999999999998765443221 257889999999987766654
Q ss_pred CccEEEEccCCCCCC-----CCCcchhhhhHHHHHH----HHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGT----LNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~----~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|+||||||..... ..+.+...+++|+.|+ +.+++.+++. +.++||++||..+..+.+
T Consensus 76 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~-~~g~iv~isS~~~~~~~~----------- 143 (277)
T PRK05993 76 RLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQ-GQGRIVQCSSILGLVPMK----------- 143 (277)
T ss_pred CccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhc-CCCEEEEECChhhcCCCC-----------
Confidence 479999999863221 1223446789999994 4555556555 567999999965433110
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHH-----------HHHHHH
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAA-----------AVLSLI 217 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~-----------~~~~~~ 217 (328)
....|+.||.+.|.+++.++.+ +|+++++++||.+-.+........+.. .+....
T Consensus 144 -----------~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (277)
T PRK05993 144 -----------YRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRFRANALAAFKRWIDIENSVHRAAYQQQM 212 (277)
T ss_pred -----------ccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCchhhHHHHHHhhhhccccchhHHHHHHHH
Confidence 1245999999999999988754 589999999999877642211000000 000000
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCCcEEE
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCL 255 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~ 255 (328)
.............+.++++|+.++.++.++.....|.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~va~~i~~a~~~~~~~~~~~~ 250 (277)
T PRK05993 213 ARLEGGGSKSRFKLGPEAVYAVLLHALTAPRPRPHYRV 250 (277)
T ss_pred HHHHhhhhccccCCCHHHHHHHHHHHHcCCCCCCeeee
Confidence 00000000111246899999999999987644334543
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=166.86 Aligned_cols=219 Identities=18% Similarity=0.173 Sum_probs=154.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||++++++|+++|++|++++|+.. .......... ..++.++.+|+++++++.++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL--GRRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999998652 2222222111 2468899999999988876554
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CC-ccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PS-IKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+ .+++|++||...+.+.+
T Consensus 79 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 148 (248)
T TIGR01832 79 GHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGI---------- 148 (248)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCC----------
Confidence 58999999987432 122345577889999999999987642 12 46899999975443110
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.+. |+++++++||.+..+....... ............ + .
T Consensus 149 ------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~---~--~ 210 (248)
T TIGR01832 149 ------------RVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRA-DEDRNAAILERI---P--A 210 (248)
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhcccc-ChHHHHHHHhcC---C--C
Confidence 11349999999999999998874 8999999999998875321111 011111111111 1 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCCcEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
..+++++|+|+++.+++.... ..|.+...+
T Consensus 211 ~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~d 242 (248)
T TIGR01832 211 GRWGTPDDIGGPAVFLASSASDYVNGYTLAVD 242 (248)
T ss_pred CCCcCHHHHHHHHHHHcCccccCcCCcEEEeC
Confidence 468999999999999997533 346554443
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=171.58 Aligned_cols=195 Identities=19% Similarity=0.152 Sum_probs=144.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+|+||||+|+||+++++.|+++|++|++++|+.+....+..... ...++.++.+|++|++++.++++ .
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP---KAARVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc---cCCeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999999999998655443322221 11268899999999988877654 3
Q ss_pred ccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 82 CDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 82 ~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
+|+|||+||.... ...+.+...+++|+.++.++++++ ++. +.+++|++||.+.+++.+
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~-~~~~iv~isS~~~~~~~~----------- 146 (257)
T PRK07024 79 PDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAA-RRGTLVGIASVAGVRGLP----------- 146 (257)
T ss_pred CCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhc-CCCEEEEEechhhcCCCC-----------
Confidence 7999999986432 111335577899999999988744 344 457899999976665321
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+++.++.+ +|++++++|||.+.++..... . ++. .
T Consensus 147 -----------~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~-------------~---~~~--~ 197 (257)
T PRK07024 147 -----------GAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHN-------------P---YPM--P 197 (257)
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhcC-------------C---CCC--C
Confidence 1234999999999999888743 589999999999988742210 0 000 1
Q ss_pred cceeHHHHHHHHHHhhcCC
Q 020266 229 GWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~ 247 (328)
.++.++|+++.++.++.+.
T Consensus 198 ~~~~~~~~a~~~~~~l~~~ 216 (257)
T PRK07024 198 FLMDADRFAARAARAIARG 216 (257)
T ss_pred CccCHHHHHHHHHHHHhCC
Confidence 1468999999999999864
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=170.38 Aligned_cols=221 Identities=14% Similarity=0.136 Sum_probs=156.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|++|||||+|+||.++++.|+++|++|++++|+... ...+...... ...++.++.+|+++.+.+.++++
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEK--EGVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4457899999999999999999999999999999997543 2222222221 12468889999999988877664
Q ss_pred ---CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 ---GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 ---~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+|+.... ...+.+...+++|+.++.++++++.+.. ..+++|++||.+++.+.+
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~---------- 190 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNE---------- 190 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCC----------
Confidence 57999999986321 1122345678999999999999987641 235899999976554211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.+. |+++++++||.++++...... ....+...... ...
T Consensus 191 ------------~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~--~~~~~~~~~~~-----~~~ 251 (290)
T PRK06701 191 ------------TLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDF--DEEKVSQFGSN-----TPM 251 (290)
T ss_pred ------------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCccccccc--CHHHHHHHHhc-----CCc
Confidence 11349999999999999998874 899999999999988533211 11222222221 123
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
..+.+++|+|+++++++.... ..| .+++.+
T Consensus 252 ~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idg 284 (290)
T PRK06701 252 QRPGQPEELAPAYVFLASPDSSYITGQMLHVNG 284 (290)
T ss_pred CCCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence 457899999999999988643 245 445544
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=167.18 Aligned_cols=222 Identities=15% Similarity=0.114 Sum_probs=155.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.++.. ...++.++++|+++++++.++++
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 73 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPETV----------DGRPAEFHAADVRDPDQVAALVDAIVERH 73 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhhh----------cCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999764310 12468899999999988877765
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+||||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.+...+.+
T Consensus 74 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~---------- 143 (252)
T PRK07856 74 GRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSP---------- 143 (252)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCC----------
Confidence 46999999986322 122334577899999999999987652 1336899999976543211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
..+.|+.+|.+.+.+++.++.++ .+++++++||.+.++....... ............+ ..
T Consensus 144 ------------~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~-----~~ 205 (252)
T PRK07856 144 ------------GTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYG-DAEGIAAVAATVP-----LG 205 (252)
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhcc-CHHHHHHHhhcCC-----CC
Confidence 12459999999999999998874 3899999999998774321111 1111222222111 23
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCCcEEEecCccCHHHHH
Q 020266 229 GWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSHYSEIV 266 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~~~~el~ 266 (328)
.+..++|+++++++++.... ..|.....++......+.
T Consensus 206 ~~~~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~~~~~~~ 245 (252)
T PRK07856 206 RLATPADIAWACLFLASDLASYVSGANLEVHGGGERPAFL 245 (252)
T ss_pred CCcCHHHHHHHHHHHcCcccCCccCCEEEECCCcchHHHH
Confidence 36689999999999887532 356444444333333443
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-22 Score=169.57 Aligned_cols=211 Identities=17% Similarity=0.136 Sum_probs=151.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++.+.+...+... ..++..+.+|++|++++.++++
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS--GGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 466899999999999999999999999999999999876555444333222 2467889999999988877664
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC----CccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|++|||||.... ...+.+...+++|+.++..+++++.+.. ..+++|++||.+...... .
T Consensus 84 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~----~---- 155 (253)
T PRK05867 84 LGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINV----P---- 155 (253)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCC----C----
Confidence 68999999986432 1233455678899999999999876431 135799999965432100 0
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
. ....|+.+|.+.+.+++.++.++ |+++++++||.+-++..... ........... +
T Consensus 156 ------~------~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~----~~~~~~~~~~~---~-- 214 (253)
T PRK05867 156 ------Q------QVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY----TEYQPLWEPKI---P-- 214 (253)
T ss_pred ------C------CccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc----hHHHHHHHhcC---C--
Confidence 0 12349999999999999998764 89999999999987753221 11111222211 1
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+..++|+|+++++++...
T Consensus 215 ~~r~~~p~~va~~~~~L~s~~ 235 (253)
T PRK05867 215 LGRLGRPEELAGLYLYLASEA 235 (253)
T ss_pred CCCCcCHHHHHHHHHHHcCcc
Confidence 124678999999999998753
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=166.60 Aligned_cols=219 Identities=16% Similarity=0.181 Sum_probs=152.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|+|+||||||+||+++++.|+++|++|+++.|+..+ ......... ....++.++.+|+++++++.++++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIG--ALGGKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999888886543 222222211 123578889999999988777665
Q ss_pred --CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+|||+|+..... ..+.+...+++|+.++.++++++.+. .+.+++|++||.+..++.+
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~---------- 150 (248)
T PRK05557 81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNP---------- 150 (248)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCC----------
Confidence 579999999864321 12234466789999999999888753 1446899999976665321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.+ .++++++++|+.+.++..... ............+ .
T Consensus 151 ------------~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~---~~~~~~~~~~~~~-----~ 210 (248)
T PRK05557 151 ------------GQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDAL---PEDVKEAILAQIP-----L 210 (248)
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccccc---ChHHHHHHHhcCC-----C
Confidence 1244999999999988887764 379999999998876643321 1122222222221 2
Q ss_pred ccceeHHHHHHHHHHhhcC--CCCCC-cEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEV--PSANG-RYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~--~~~~g-~~~~~~ 257 (328)
..+.+++|+++++..++.. ....| .|++.+
T Consensus 211 ~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~ 243 (248)
T PRK05557 211 GRLGQPEEIASAVAFLASDEAAYITGQTLHVNG 243 (248)
T ss_pred CCCcCHHHHHHHHHHHcCcccCCccccEEEecC
Confidence 3467999999999988865 22345 566654
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=168.47 Aligned_cols=205 Identities=17% Similarity=0.103 Sum_probs=146.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|++|||||+|+||+++++.|+++|++|++++|+.... .++.++++|++|++++.++++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~-------------~~~~~~~~D~~~~~~i~~~~~~~~~~ 69 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY-------------NDVDYFKVDVSNKEQVIKGIDYVISK 69 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc-------------CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999976432 257889999999988877665
Q ss_pred --CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||... ....+.+...+++|+.++.++++++.+. .+.+++|++||..+..+.+
T Consensus 70 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 139 (258)
T PRK06398 70 YGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTR---------- 139 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCCC----------
Confidence 5899999998632 1223345577899999999998887653 1457899999975443110
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCC----cchHHHHHHHHhC-CCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTL----NTSAAAVLSLIKG-AQTY 223 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~~~~-~~~~ 223 (328)
....|+.+|.+.+.+++.++.+. ++++++++||.+.++...... ......+.+.... ...
T Consensus 140 ------------~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 206 (258)
T PRK06398 140 ------------NAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGEM- 206 (258)
T ss_pred ------------CCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhhc-
Confidence 13459999999999999998875 489999999998776321100 0000111110000 000
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.....+..++|+|+++++++...
T Consensus 207 -~~~~~~~~p~eva~~~~~l~s~~ 229 (258)
T PRK06398 207 -HPMKRVGKPEEVAYVVAFLASDL 229 (258)
T ss_pred -CCcCCCcCHHHHHHHHHHHcCcc
Confidence 11234678999999999998753
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=168.60 Aligned_cols=217 Identities=17% Similarity=0.134 Sum_probs=151.8
Q ss_pred Ccc-cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 1 MSS-VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 1 ~~~-~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
||. ...+++|+++||||+|+||+++++.|+++|++|++++|+.+....+...+.. ...++.++++|+++++++.+++
T Consensus 1 ~~~~~~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~ 78 (278)
T PRK08277 1 MMPNLFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKA--AGGEALAVKADVLDKESLEQAR 78 (278)
T ss_pred CCCceeccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHH
Confidence 444 3356789999999999999999999999999999999986554443333222 1246888999999998877665
Q ss_pred C-------CccEEEEccCCCCC--------------------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEE
Q 020266 80 D-------GCDGVCHTASPFYH--------------------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVL 129 (328)
Q Consensus 80 ~-------~~d~vih~a~~~~~--------------------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~ 129 (328)
+ ++|+|||+||.... ...+.+...+++|+.++..+++++.+. .+.+++|+
T Consensus 79 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~ 158 (278)
T PRK08277 79 QQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIIN 158 (278)
T ss_pred HHHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 4 68999999985321 112235577889999988776655432 14568999
Q ss_pred ecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC
Q 020266 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL 206 (328)
Q Consensus 130 ~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~ 206 (328)
+||.+++.+.+ ....|+.+|.+.+.+++.++.++ ++++.+|+||.+.++......
T Consensus 159 isS~~~~~~~~----------------------~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~ 216 (278)
T PRK08277 159 ISSMNAFTPLT----------------------KVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALL 216 (278)
T ss_pred EccchhcCCCC----------------------CCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhh
Confidence 99976543110 12449999999999999998875 799999999999988432110
Q ss_pred ----cchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 207 ----NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 207 ----~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
.............. ....+..++|+|+++++++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~-----p~~r~~~~~dva~~~~~l~s~ 255 (278)
T PRK08277 217 FNEDGSLTERANKILAHT-----PMGRFGKPEELLGTLLWLADE 255 (278)
T ss_pred ccccccchhHHHHHhccC-----CccCCCCHHHHHHHHHHHcCc
Confidence 00011111111111 123477899999999998875
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=167.49 Aligned_cols=219 Identities=18% Similarity=0.150 Sum_probs=150.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
+++++||||+|+||++++++|+++|++|++..+.. .........+.. ...++.++.+|++|.+++.++++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRR--QGGEALAVAADVADEADVLRLFEAVDRELG 79 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHh--CCCcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999988776543 222222222211 12457789999999988877765
Q ss_pred CccEEEEccCCCCCC------CCCcchhhhhHHHHHHHHHHHHHhcCC------CccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 GCDGVCHTASPFYHD------AKDPQVELLDPAVKGTLNVLNSCAKFP------SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ~~d~vih~a~~~~~~------~~~~~~~~~~~N~~~~~~l~~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|+|||+|+..... ..+.+...+++|+.++.++++++.+.. ..+++|++||.++.++.+.
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~------- 152 (248)
T PRK06123 80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPG------- 152 (248)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCC-------
Confidence 579999999874321 122344678999999999988876531 1247999999876663210
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.|.+++.++.+. |++++++||+.++||...... ....+.......+
T Consensus 153 --------------~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~--~~~~~~~~~~~~p---- 212 (248)
T PRK06123 153 --------------EYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG--EPGRVDRVKAGIP---- 212 (248)
T ss_pred --------------CccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC--CHHHHHHHHhcCC----
Confidence 01239999999999999988764 899999999999998533211 1222222222222
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
..-+.+++|+++++..++.... ..| .|++.+
T Consensus 213 -~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~g 246 (248)
T PRK06123 213 -MGRGGTAEEVARAILWLLSDEASYTTGTFIDVSG 246 (248)
T ss_pred -CCCCcCHHHHHHHHHHHhCccccCccCCEEeecC
Confidence 1123588999999999887542 344 666654
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=168.99 Aligned_cols=223 Identities=18% Similarity=0.137 Sum_probs=153.0
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|++...+++|+|+||||+|+||++++++|+++|++|++++|+..... ..++.++++|++|++.+.++++
T Consensus 1 ~~~~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~ 69 (260)
T PRK06523 1 MSFFLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDL-----------PEGVEFVAADLTTAEGCAAVAR 69 (260)
T ss_pred CCcCcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhhc-----------CCceeEEecCCCCHHHHHHHHH
Confidence 55555678899999999999999999999999999999999764321 2357889999999987765543
Q ss_pred -------CccEEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCC
Q 020266 81 -------GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPR 143 (328)
Q Consensus 81 -------~~d~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~ 143 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.....+..
T Consensus 70 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~--- 146 (260)
T PRK06523 70 AVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLP--- 146 (260)
T ss_pred HHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCCC---
Confidence 57999999985321 223345577889999998887765432 1446899999975433100
Q ss_pred CCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc--------chHHH
Q 020266 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--------TSAAA 212 (328)
Q Consensus 144 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--------~~~~~ 212 (328)
+ ....|+.+|.+.+.+++.++.++ |+++++++||.+.+|....... .....
T Consensus 147 -------~-----------~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T PRK06523 147 -------E-----------STTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGA 208 (260)
T ss_pred -------C-----------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHH
Confidence 0 12459999999999999988764 7999999999999885321000 00011
Q ss_pred HHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 213 VLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
...+.......| ...+..++|+++++.+++... ...| .+.+.+
T Consensus 209 ~~~~~~~~~~~p--~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdg 254 (260)
T PRK06523 209 KQIIMDSLGGIP--LGRPAEPEEVAELIAFLASDRAASITGTEYVIDG 254 (260)
T ss_pred HHHHHHHhccCc--cCCCCCHHHHHHHHHHHhCcccccccCceEEecC
Confidence 111111110011 223568999999999998753 2345 555554
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=165.40 Aligned_cols=212 Identities=17% Similarity=0.170 Sum_probs=151.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+|+||||+|+||.+++++|+++|++|++++|+......+....... ..++.++++|+++.+++.++++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA--GGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 466889999999999999999999999999999999765544433332221 2457789999999988776654
Q ss_pred --CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|+|||+|+... ....+.+...+++|+.++..+++++.+. .+.+++|++||.....+.+
T Consensus 83 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--------- 153 (252)
T PRK07035 83 HGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPGD--------- 153 (252)
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCCC---------
Confidence 5799999998532 1222334567889999999888776432 1457899999975443110
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
+.+.|+.||.+.+.+++.++.++ |++++++.||.+..+....... ............ +
T Consensus 154 -------------~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~-~~~~~~~~~~~~---~-- 214 (252)
T PRK07035 154 -------------FQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFK-NDAILKQALAHI---P-- 214 (252)
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccC-CHHHHHHHHccC---C--
Confidence 12459999999999999998764 8999999999997764322111 112222222221 1
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+..++|+|+++.+++.+.
T Consensus 215 ~~~~~~~~~va~~~~~l~~~~ 235 (252)
T PRK07035 215 LRRHAEPSEMAGAVLYLASDA 235 (252)
T ss_pred CCCcCCHHHHHHHHHHHhCcc
Confidence 233678999999999998764
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=172.92 Aligned_cols=223 Identities=18% Similarity=0.129 Sum_probs=147.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+|+||||||+||++++++|+++|++|++++|+.++.......+ ..+.++.+|++|.+++.++++
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l------~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI------DGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------hhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999865544322221 137889999999998877663
Q ss_pred --CccEEEEccCCCCC---CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 --GCDGVCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 --~~d~vih~a~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.++..+++|+.++.++++++. +. +.+++|++||.+...+.. . .. ....
T Consensus 97 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~~~~--~-~~-~~~~ 171 (315)
T PRK06196 97 GRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG-AGARVVALSSAGHRRSPI--R-WD-DPHF 171 (315)
T ss_pred CCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEECCHHhccCCC--C-cc-ccCc
Confidence 58999999996422 1233455778999999777776554 33 346899999975433111 0 00 0010
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
..+. .+...|+.||.+.+.+.+.++.+ .|+++++++||.+.++....... ............. .+- ..
T Consensus 172 ~~~~------~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~~~~~~~~~~~-~~~-~~ 242 (315)
T PRK06196 172 TRGY------DKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPR-EEQVALGWVDEHG-NPI-DP 242 (315)
T ss_pred cCCC------ChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCCh-hhhhhhhhhhhhh-hhh-hh
Confidence 1111 12356999999999999888765 48999999999999985432110 0000000111000 000 00
Q ss_pred cceeHHHHHHHHHHhhcCCC
Q 020266 229 GWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~ 248 (328)
.+..++|.|..++.++..+.
T Consensus 243 ~~~~~~~~a~~~~~l~~~~~ 262 (315)
T PRK06196 243 GFKTPAQGAATQVWAATSPQ 262 (315)
T ss_pred hcCCHhHHHHHHHHHhcCCc
Confidence 25688999999999987543
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=167.26 Aligned_cols=211 Identities=17% Similarity=0.200 Sum_probs=150.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+||||||+|+||+++++.|++.|++|+++.|+ .+.+.+....... ..++.++++|+++.+++.++++
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE--GRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999997 4434433333222 2468899999999998877765
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|++||+||.... ...+.++..+++|+.++.++++++.+. .+.+++|++||...+.+.+
T Consensus 89 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 158 (258)
T PRK06935 89 FGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGK---------- 158 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCC----------
Confidence 57999999986321 123345577889999988888776542 1456899999976543211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++++. |+++++++||.+..+....... ............ + .
T Consensus 159 ------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~-~~~~~~~~~~~~---~--~ 220 (258)
T PRK06935 159 ------------FVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRA-DKNRNDEILKRI---P--A 220 (258)
T ss_pred ------------CchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhccc-ChHHHHHHHhcC---C--C
Confidence 12349999999999999998864 7999999999998874321110 011111222211 1 2
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 020266 228 FGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~ 247 (328)
..+..++|++..+.+++...
T Consensus 221 ~~~~~~~dva~~~~~l~s~~ 240 (258)
T PRK06935 221 GRWGEPDDLMGAAVFLASRA 240 (258)
T ss_pred CCCCCHHHHHHHHHHHcChh
Confidence 34778899999999988753
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=174.62 Aligned_cols=208 Identities=15% Similarity=0.088 Sum_probs=148.9
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|+|+||||+|+||+++++.|+++|++|++++|+.+..+.+....... ..++.++.+|++|++++.++++
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~--g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA--GGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999876554443333222 3468889999999998887654
Q ss_pred ---CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|++||+|+... ....+.+...+++|+.++.++++++.+. .+.++||++||.+.+.+.+
T Consensus 82 ~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~--------- 152 (334)
T PRK07109 82 ELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIP--------- 152 (334)
T ss_pred HCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCC---------
Confidence 6899999998632 1223345577889988877766655432 1457899999976543211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc-----CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.+|.+.+.+++.++.+. ++++++++|+.+.+|.... ........ .
T Consensus 153 -------------~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~--------~~~~~~~~---~ 208 (334)
T PRK07109 153 -------------LQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDW--------ARSRLPVE---P 208 (334)
T ss_pred -------------cchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhh--------hhhhcccc---c
Confidence 12459999999999998887652 6999999999988774211 11111111 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCC
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.....+..++|+|++++.++.++
T Consensus 209 ~~~~~~~~pe~vA~~i~~~~~~~ 231 (334)
T PRK07109 209 QPVPPIYQPEVVADAILYAAEHP 231 (334)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCC
Confidence 11234678999999999999876
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=164.89 Aligned_cols=164 Identities=21% Similarity=0.211 Sum_probs=128.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Cc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 82 (328)
+++++|+||||+|+||+++++.|+++|+ +|++++|+.++... ...++.++.+|++|++.+.++++ .+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~~~i 74 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEAASDV 74 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHhcCCC
Confidence 4578999999999999999999999998 99999998655332 13468899999999998888776 47
Q ss_pred cEEEEccCC-CC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASP-FY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~-~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|+|||+|+. .. ....+.+...+++|+.++.++++++.+. .+.+++|++||...+.+.+
T Consensus 75 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~------------- 141 (238)
T PRK08264 75 TILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFP------------- 141 (238)
T ss_pred CEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCC-------------
Confidence 999999987 22 1122344567889999999999987642 1456899999976544211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCC
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPL 201 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~ 201 (328)
....|+.+|.+.|.+.+.++.+. +++++++||+.+.++.
T Consensus 142 ---------~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 142 ---------NLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred ---------CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 12459999999999999987763 8999999999997764
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=166.42 Aligned_cols=211 Identities=17% Similarity=0.117 Sum_probs=145.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|+++||||+|+||++++++|++.|++|++..+ +.+........... ....+..+.+|+++.+++..+++
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS--NGGSAFSIGANLESLHGVEALYSSLDNE 79 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHh--cCCceEEEecccCCHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999988754 43333332222221 12456788899998876554332
Q ss_pred --------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCC
Q 020266 81 --------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 --------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|+||||||.... ...+.+...+++|+.++..+++++.+.. ..+++|++||.+...+.+
T Consensus 80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------ 153 (252)
T PRK12747 80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLP------ 153 (252)
T ss_pred hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCCC------
Confidence 58999999996321 1122355778899999999999887642 235899999976543211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.||.+.+.+++.++.++ |++++++.||.+.++....... ...........
T Consensus 154 ----------------~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~--- 212 (252)
T PRK12747 154 ----------------DFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS--DPMMKQYATTI--- 212 (252)
T ss_pred ----------------CchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc--CHHHHHHHHhc---
Confidence 12459999999999999988764 8999999999999885321111 01111111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.....+.+++|+|+++.+++...
T Consensus 213 -~~~~~~~~~~dva~~~~~l~s~~ 235 (252)
T PRK12747 213 -SAFNRLGEVEDIADTAAFLASPD 235 (252)
T ss_pred -CcccCCCCHHHHHHHHHHHcCcc
Confidence 11234789999999999988743
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=165.99 Aligned_cols=217 Identities=18% Similarity=0.168 Sum_probs=153.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
++++|+|+||||+|+||+++++.|+++|++|++++|+.......... ...++..+.+|+++++++.++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 86 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQL-----LGGNAKGLVCDVSDSQSVEAAVAAVISA 86 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-----hCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999976532221111 12356789999999988777664
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+..++.+
T Consensus 87 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 156 (255)
T PRK06841 87 FGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALE---------- 156 (255)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCC----------
Confidence 57999999986432 112234467889999999999987653 1456899999976655321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.++ |+++++++||.+..+....... ........... + .
T Consensus 157 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~~---~--~ 217 (255)
T PRK06841 157 ------------RHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWA--GEKGERAKKLI---P--A 217 (255)
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccc--hhHHHHHHhcC---C--C
Confidence 12349999999999999988863 8999999999998874322111 01111122211 1 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCCcEEEe
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~ 256 (328)
..+.+++|++++++.++.... ..|.....
T Consensus 218 ~~~~~~~~va~~~~~l~~~~~~~~~G~~i~~ 248 (255)
T PRK06841 218 GRFAYPEEIAAAALFLASDAAAMITGENLVI 248 (255)
T ss_pred CCCcCHHHHHHHHHHHcCccccCccCCEEEE
Confidence 357899999999999997643 25644333
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=166.90 Aligned_cols=219 Identities=17% Similarity=0.111 Sum_probs=153.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||++++++|+++|++|++++|+.+........+.. ...++.++.+|+++.+++.++++
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIRE--AGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999987654443333222 13468899999999988877665
Q ss_pred -CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||...+.+.+
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~---------- 152 (253)
T PRK06172 83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAP---------- 152 (253)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCC----------
Confidence 46999999986321 122344567889999998887765431 1446899999976554211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.++ |++++++.||.+-.+....................+ .
T Consensus 153 ------------~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-----~ 215 (253)
T PRK06172 153 ------------KMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHP-----V 215 (253)
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCC-----C
Confidence 12459999999999999998875 799999999999777533211101111111111111 1
Q ss_pred ccceeHHHHHHHHHHhhcCC--CCCCcEE
Q 020266 228 FGWVNVKDVANAHIQAFEVP--SANGRYC 254 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~--~~~g~~~ 254 (328)
..+..++|+++.+++++.+. ...|.+.
T Consensus 216 ~~~~~p~~ia~~~~~l~~~~~~~~~G~~i 244 (253)
T PRK06172 216 GRIGKVEEVASAVLYLCSDGASFTTGHAL 244 (253)
T ss_pred CCccCHHHHHHHHHHHhCccccCcCCcEE
Confidence 23678999999999998754 3356443
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=165.29 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=149.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||.++++.|++.|++|++++|++++...+...+... ..++.++.+|+++++++.++++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE--GGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999876655543333222 2468889999999988777665
Q ss_pred -CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+||.... ...+.+...+++|+.++..+++++.+. .+.+++|++||..+... +.+
T Consensus 82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~-~~~-------- 152 (254)
T PRK07478 82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA-GFP-------- 152 (254)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc-CCC--------
Confidence 68999999986421 112345677899999888876655432 14568999999654320 100
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+-.+....... ... ......... + .
T Consensus 153 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~-~~~~~~~~~--~--~ 214 (254)
T PRK07478 153 ------------GMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGD-TPE-ALAFVAGLH--A--L 214 (254)
T ss_pred ------------CcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccC-CHH-HHHHHHhcC--C--C
Confidence 12459999999999999998864 7999999999998773221111 111 111222111 1 1
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 020266 228 FGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~ 247 (328)
..+..++|+++++++++.+.
T Consensus 215 ~~~~~~~~va~~~~~l~s~~ 234 (254)
T PRK07478 215 KRMAQPEEIAQAALFLASDA 234 (254)
T ss_pred CCCcCHHHHHHHHHHHcCch
Confidence 23678999999999998754
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=167.47 Aligned_cols=219 Identities=17% Similarity=0.148 Sum_probs=151.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+++||||+|+||++++++|+++|++|++++|+.+....+...+... ..++.++++|+++++.+.++++ +
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD--GGKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 679999999999999999999999999999999876554443333221 2467889999999998777665 5
Q ss_pred ccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 82 ~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
+|+||||||..... ..+.+...+++|+.++..+++++.+. ....++|++||....++.+
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------ 147 (256)
T PRK08643 80 LNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNP------------ 147 (256)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCC------------
Confidence 89999999863221 12234567889999988877776542 1235899999976555321
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC-------cchHHH-HHHHHhCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-------NTSAAA-VLSLIKGAQ 221 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-------~~~~~~-~~~~~~~~~ 221 (328)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.+|...... .....+ ........
T Consensus 148 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (256)
T PRK08643 148 ----------ELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDI- 216 (256)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccC-
Confidence 1245999999999999998875 4899999999999887421100 000001 01111110
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEe
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLV 256 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~ 256 (328)
+ ...+..++|++.++.+++... ...|.....
T Consensus 217 --~--~~~~~~~~~va~~~~~L~~~~~~~~~G~~i~v 249 (256)
T PRK08643 217 --T--LGRLSEPEDVANCVSFLAGPDSDYITGQTIIV 249 (256)
T ss_pred --C--CCCCcCHHHHHHHHHHHhCccccCccCcEEEe
Confidence 1 123668999999999998753 235644333
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-21 Score=164.74 Aligned_cols=215 Identities=15% Similarity=0.128 Sum_probs=150.9
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
|..+++|+++||||+|+||++++++|++.|++|++++|+.++ .+.+...+... ..++.++.+|++|++++.++++
T Consensus 3 ~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~ 80 (254)
T PRK06114 3 LFDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA--GRRAIQIAADVTSKADLRAAVART 80 (254)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHH
Confidence 344678999999999999999999999999999999997543 23322222211 2467889999999988877665
Q ss_pred -----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 -----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 -----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.++..+++++.+. .+.+++|++||.+...+.+..
T Consensus 81 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~----- 155 (254)
T PRK06114 81 EAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRGL----- 155 (254)
T ss_pred HHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCC-----
Confidence 47999999996432 123345577889999998887776432 144689999997655432100
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.+|.+.+.+++.++.+ +|+++++++||.+.++...... ............ |
T Consensus 156 ---------------~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~--~~~~~~~~~~~~---p 215 (254)
T PRK06114 156 ---------------LQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPE--MVHQTKLFEEQT---P 215 (254)
T ss_pred ---------------CcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccccc--chHHHHHHHhcC---C
Confidence 0134999999999999999875 4899999999999887532111 111112222211 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCC
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+..++|++.++++++.+.
T Consensus 216 --~~r~~~~~dva~~~~~l~s~~ 236 (254)
T PRK06114 216 --MQRMAKVDEMVGPAVFLLSDA 236 (254)
T ss_pred --CCCCcCHHHHHHHHHHHcCcc
Confidence 123668999999999988753
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=168.19 Aligned_cols=205 Identities=18% Similarity=0.181 Sum_probs=148.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+++|+||||+|+||+++++.|++.|++|++++|+..+.+.+...+.. ...++.++.+|++|++.+.++++ +
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELAD--HGGEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999999999986554443332222 23478889999999988777665 6
Q ss_pred ccEEEEccCCCCCC------CCCcchhhhhHHHHHHHHHHHHHhcC--CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 82 CDGVCHTASPFYHD------AKDPQVELLDPAVKGTLNVLNSCAKF--PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 82 ~d~vih~a~~~~~~------~~~~~~~~~~~N~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
+|+|||+|+..... ..+.+...+++|+.++.++++.+.+. ...+++|++||.+++.+.+
T Consensus 79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 145 (263)
T PRK06181 79 IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVP------------- 145 (263)
T ss_pred CCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCC-------------
Confidence 89999999864321 11223466899999999999988642 1346899999976554211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC--CCCCCc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT--YPNVTF 228 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 228 (328)
....|+.+|...+.+++.++.+ .++++++++||.+.++....... ..+.+. .+.+..
T Consensus 146 ---------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~---------~~~~~~~~~~~~~~ 207 (263)
T PRK06181 146 ---------TRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALD---------GDGKPLGKSPMQES 207 (263)
T ss_pred ---------CccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhcc---------cccccccccccccc
Confidence 1245999999999999887654 48999999999998764321100 001111 122334
Q ss_pred cceeHHHHHHHHHHhhcC
Q 020266 229 GWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~ 246 (328)
.+++++|+|+++..++..
T Consensus 208 ~~~~~~dva~~i~~~~~~ 225 (263)
T PRK06181 208 KIMSAEECAEAILPAIAR 225 (263)
T ss_pred CCCCHHHHHHHHHHHhhC
Confidence 789999999999999985
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=165.92 Aligned_cols=203 Identities=15% Similarity=0.087 Sum_probs=147.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
+||+++||||+|+||+.++++|+++|++|++++|++++...+....... ..++.++.+|+++++++.++++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999876544443333221 2468899999999988777665
Q ss_pred CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 ~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|+|||+||..... ..+.+...+++|+.++.++++.+.+. .+.+++|++||...+.+.+
T Consensus 83 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------ 150 (241)
T PRK07454 83 CPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFP------------ 150 (241)
T ss_pred CCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCCC------------
Confidence 489999999864321 12334566889999988888776432 1457899999975443110
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.+|.+.+.+++.++.+ .|++++++|||.+-+|...... . ...+ ....
T Consensus 151 ----------~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~--~----------~~~~--~~~~ 206 (241)
T PRK07454 151 ----------QWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTET--V----------QADF--DRSA 206 (241)
T ss_pred ----------CccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccccc--c----------cccc--cccc
Confidence 1245999999999999887754 4899999999999877422110 0 0000 0113
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 020266 230 WVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~ 248 (328)
.+.++|+|++++.++.++.
T Consensus 207 ~~~~~~va~~~~~l~~~~~ 225 (241)
T PRK07454 207 MLSPEQVAQTILHLAQLPP 225 (241)
T ss_pred CCCHHHHHHHHHHHHcCCc
Confidence 5789999999999998763
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=169.25 Aligned_cols=197 Identities=22% Similarity=0.156 Sum_probs=144.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++++++||||||+||++++++|+++|++|++.+|+++....+.... ..+.++.+|++|++++.++++
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL------GLVVGGPLDVTDPASFAAFLDAVEADL 76 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------ccceEEEccCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999766544332221 147789999999988766554
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|++|||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+...+.+
T Consensus 77 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 145 (273)
T PRK07825 77 GPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVP----------- 145 (273)
T ss_pred CCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCCC-----------
Confidence 57999999986332 122234567889999999888776542 1557899999976544211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+.+.++.+ .|+++++++|+.+.++..... + .....
T Consensus 146 -----------~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~~---------------~--~~~~~ 197 (273)
T PRK07825 146 -----------GMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAGT---------------G--GAKGF 197 (273)
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhccc---------------c--cccCC
Confidence 1245999999998888887665 489999999998866532110 0 01123
Q ss_pred cceeHHHHHHHHHHhhcCCC
Q 020266 229 GWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~ 248 (328)
.+++++|+|+.++.++.++.
T Consensus 198 ~~~~~~~va~~~~~~l~~~~ 217 (273)
T PRK07825 198 KNVEPEDVAAAIVGTVAKPR 217 (273)
T ss_pred CCCCHHHHHHHHHHHHhCCC
Confidence 47899999999999998754
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=166.74 Aligned_cols=212 Identities=14% Similarity=0.091 Sum_probs=151.4
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++.+.+...... ...++.++.+|+++++++.++++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA--AGRRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999986654444333322 13468889999999998876654
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+|||+|+.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.+...+.+
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~--------- 155 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAGR--------- 155 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCCC---------
Confidence 68999999985321 222345577899999999999998752 1456899999965443210
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
..+.|+.+|.+.+.+++.++.+. +++++.++||.+.++...... ....+ .....+.. ..
T Consensus 156 -------------~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~-~~~~~-~~~~~~~~----~~ 216 (263)
T PRK07814 156 -------------GFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVA-ANDEL-RAPMEKAT----PL 216 (263)
T ss_pred -------------CCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhcc-CCHHH-HHHHHhcC----CC
Confidence 12459999999999999998864 579999999998776422110 01111 22222211 12
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 020266 228 FGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~ 247 (328)
..+..++|+|+++++++...
T Consensus 217 ~~~~~~~~va~~~~~l~~~~ 236 (263)
T PRK07814 217 RRLGDPEDIAAAAVYLASPA 236 (263)
T ss_pred CCCcCHHHHHHHHHHHcCcc
Confidence 23568999999999998753
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=170.02 Aligned_cols=218 Identities=20% Similarity=0.152 Sum_probs=155.8
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|+++..+++|+++||||+|+||.++++.|++.|++|++++|+.++.+.+...+ .....+..+.+|++|++++.++++
T Consensus 1 ~~~~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l---~~~~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 1 GPPMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAEL---GGDDRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCCCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCCcEEEEEecCCCHHHHHHHHH
Confidence 56677778999999999999999999999999999999999876554433332 112356677799999988777654
Q ss_pred -------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCC
Q 020266 81 -------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 -------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
.+|+||||||.... ...+.+.+.+++|+.++.++++++.+.. ..++||++||.+++.+.+
T Consensus 78 ~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~------ 151 (296)
T PRK05872 78 EAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAP------ 151 (296)
T ss_pred HHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCC------
Confidence 57999999997322 2233455778999999999999886531 235899999976544211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.+|...+.+++.++.+ .|++++++.||.+.++........ ......+....
T Consensus 152 ----------------~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~~~~--- 211 (296)
T PRK05872 152 ----------------GMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADAD-LPAFRELRARL--- 211 (296)
T ss_pred ----------------CchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhcccc-chhHHHHHhhC---
Confidence 1245999999999999988764 489999999999987643221110 01122222211
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
+.....++.++|++++++.++.+.
T Consensus 212 ~~p~~~~~~~~~va~~i~~~~~~~ 235 (296)
T PRK05872 212 PWPLRRTTSVEKCAAAFVDGIERR 235 (296)
T ss_pred CCcccCCCCHHHHHHHHHHHHhcC
Confidence 111234678999999999999864
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=167.86 Aligned_cols=213 Identities=19% Similarity=0.125 Sum_probs=143.6
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-CccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-GCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~vih 87 (328)
+|+||||||||+||+++++.|++.|++|+++.|+......+....... ..++.++.+|++|++++.+++. ++|+|||
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 578999999999999999999999999999999865544433332221 2468899999999999988877 8999999
Q ss_pred ccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020266 88 TASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (328)
Q Consensus 88 ~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 158 (328)
||+.... ...+.+...+++|+.++.++++.+. +. +.++||++||.....+.+
T Consensus 80 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~SS~~~~~~~~------------------ 140 (257)
T PRK09291 80 NAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVAR-GKGKVVFTSSMAGLITGP------------------ 140 (257)
T ss_pred CCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEcChhhccCCC------------------
Confidence 9986322 1122344678889998877766543 33 457999999975443211
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCC-CCCCccceeH
Q 020266 159 VCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTY-PNVTFGWVNV 233 (328)
Q Consensus 159 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~v~v 233 (328)
....|+.+|.+.|.+++.++.+ .|+++++||||.+..+...........+.... ... +.. .....+++++
T Consensus 141 ----~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (257)
T PRK09291 141 ----FTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDTMAETPKRWYDPA-RNFTDPEDLAFPLEQFDP 215 (257)
T ss_pred ----CcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhhhhhhhhhhcchh-hHHHhhhhhhccccCCCH
Confidence 1245999999999999887664 58999999999875432111000000000000 000 000 1122345789
Q ss_pred HHHHHHHHHhhcCC
Q 020266 234 KDVANAHIQAFEVP 247 (328)
Q Consensus 234 ~D~a~~~~~~~~~~ 247 (328)
+|+++.++.++..+
T Consensus 216 ~~~~~~~~~~l~~~ 229 (257)
T PRK09291 216 QEMIDAMVEVIPAD 229 (257)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999888888754
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-21 Score=163.30 Aligned_cols=226 Identities=15% Similarity=0.110 Sum_probs=157.8
Q ss_pred Ccccc--cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 1 MSSVA--AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 1 ~~~~~--~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
|.... .+++|+|+||||+|+||+++++.|+++|++|++++|+......+....... ..++.++.+|+++.+++.++
T Consensus 1 ~~~~~~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~ 78 (255)
T PRK06113 1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSAL 78 (255)
T ss_pred CCCccccCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHH
Confidence 44443 235799999999999999999999999999999998766544433333221 24678889999999887765
Q ss_pred hC-------CccEEEEccCCCCC----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCC
Q 020266 79 VD-------GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 79 ~~-------~~d~vih~a~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
++ ++|+|||+||.... ...+.+...+++|+.++.++++++... .+.+++|++||.+...+.+
T Consensus 79 ~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---- 154 (255)
T PRK06113 79 ADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI---- 154 (255)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCCC----
Confidence 54 57999999986332 112334466889999999999998642 1345899999975433110
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
....|+.+|.+.+.+++.++.+ .+++++++.||.+..+...... ......+.....+
T Consensus 155 ------------------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~~~~ 214 (255)
T PRK06113 155 ------------------NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQHTP 214 (255)
T ss_pred ------------------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccccc--CHHHHHHHHhcCC
Confidence 1244999999999999998875 4799999999999877532211 1122222222211
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+..++|+++++++++.... ..| .+++.+
T Consensus 215 -----~~~~~~~~d~a~~~~~l~~~~~~~~~G~~i~~~g 248 (255)
T PRK06113 215 -----IRRLGQPQDIANAALFLCSPAASWVSGQILTVSG 248 (255)
T ss_pred -----CCCCcCHHHHHHHHHHHcCccccCccCCEEEECC
Confidence 2336799999999999987532 245 455554
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-21 Score=163.56 Aligned_cols=217 Identities=19% Similarity=0.177 Sum_probs=151.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++++++||||+|+||+++++.|+++|+.|.+.+|+.++...+.... ..++.++.+|+++.+++.++++
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKAEADL 78 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999988888765544332211 2468889999999988777643
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+|||+|+.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+..++.+
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 147 (245)
T PRK12936 79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNP----------- 147 (245)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCC-----------
Confidence 58999999986432 122345577899999999998876532 1456899999976666321
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+++.++.+ .++++++++|+.+.++...... .......... ....
T Consensus 148 -----------~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~----~~~~~~~~~~----~~~~ 208 (245)
T PRK12936 148 -----------GQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLN----DKQKEAIMGA----IPMK 208 (245)
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccC----hHHHHHHhcC----CCCC
Confidence 1234999999999888887765 3799999999988765432111 1111111211 1123
Q ss_pred cceeHHHHHHHHHHhhcCCCC--CC-cEEEecC
Q 020266 229 GWVNVKDVANAHIQAFEVPSA--NG-RYCLVER 258 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~~ 258 (328)
.+.+++|+++++.+++..... .| .+++.++
T Consensus 209 ~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 209 RMGTGAEVASAVAYLASSEAAYVTGQTIHVNGG 241 (245)
T ss_pred CCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 367899999999988865322 45 5565543
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=165.20 Aligned_cols=209 Identities=17% Similarity=0.155 Sum_probs=148.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||++++++|+++|++|++++|+.. .......... ..++.++.+|+++++++.++++
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL--GRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999888642 2222222221 3468889999999998887765
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|++|||||.... ...+.+...+++|+.++..+++++.+. ...+++|++||...+.+.+
T Consensus 81 ~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~--------- 151 (251)
T PRK12481 81 MGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGI--------- 151 (251)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCC---------
Confidence 57999999986332 123456678899999999988877543 1236899999976544211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|.+.+.+++.++.+ +|+++++++||.+-.+...... ............. |.
T Consensus 152 -------------~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~---p~- 213 (251)
T PRK12481 152 -------------RVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALR-ADTARNEAILERI---PA- 213 (251)
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcc-cChHHHHHHHhcC---CC-
Confidence 1134999999999999998875 5899999999999776422110 0111112222221 22
Q ss_pred CccceeHHHHHHHHHHhhcC
Q 020266 227 TFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~ 246 (328)
..+..++|+++++.+++..
T Consensus 214 -~~~~~peeva~~~~~L~s~ 232 (251)
T PRK12481 214 -SRWGTPDDLAGPAIFLSSS 232 (251)
T ss_pred -CCCcCHHHHHHHHHHHhCc
Confidence 2367899999999999874
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-21 Score=163.71 Aligned_cols=221 Identities=16% Similarity=0.160 Sum_probs=156.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.+....+...+.. ...++.++.+|+++++++.++++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA--AGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999986554443332222 23468899999999988777665
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|+|||+|+.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.....+.+
T Consensus 87 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~----------- 155 (256)
T PRK06124 87 GRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARA----------- 155 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCC-----------
Confidence 46999999986322 122344567889999999999776542 1457899999976544211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+++.++.+. ++++++++|+.+.++....... .... ........ + ..
T Consensus 156 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~-~~~~-~~~~~~~~--~--~~ 218 (256)
T PRK06124 156 -----------GDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAA-DPAV-GPWLAQRT--P--LG 218 (256)
T ss_pred -----------CccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhcc-ChHH-HHHHHhcC--C--CC
Confidence 12459999999999999887753 7999999999999985322111 1111 11122221 1 23
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCCcEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
.+++++|++++++.++.... ..|.++..+
T Consensus 219 ~~~~~~~~a~~~~~l~~~~~~~~~G~~i~~d 249 (256)
T PRK06124 219 RWGRPEEIAGAAVFLASPAASYVNGHVLAVD 249 (256)
T ss_pred CCCCHHHHHHHHHHHcCcccCCcCCCEEEEC
Confidence 47899999999999998653 356554443
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=165.91 Aligned_cols=225 Identities=17% Similarity=0.136 Sum_probs=158.4
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|.....+++|+|+||||+|+||+++++.|+++|++|+++.|+.+....+...+... ..++.++.+|+++++++.++++
T Consensus 1 ~~~~~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~ 78 (258)
T PRK06949 1 MGRSINLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE--GGAAHVVSLDVTDYQSIKAAVA 78 (258)
T ss_pred CCcccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHH
Confidence 55666778899999999999999999999999999999999876554443332211 2468899999999988877765
Q ss_pred -------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----C-------CccEEEEecchhhhc
Q 020266 81 -------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----P-------SIKRVVLTSSMAAVL 137 (328)
Q Consensus 81 -------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~-------~~~~~v~~SS~~~~~ 137 (328)
.+|+|||+|+.... ...+.+...+++|+.++.++++++.+. . ..+++|++||.+...
T Consensus 79 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 158 (258)
T PRK06949 79 HAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR 158 (258)
T ss_pred HHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC
Confidence 58999999986321 122345577889999999998877532 0 135899999975433
Q ss_pred cCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHH
Q 020266 138 NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVL 214 (328)
Q Consensus 138 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~ 214 (328)
+.+ ....|+.+|.+.+.+++.++.+ +++++++++||.+++|...... ......
T Consensus 159 ~~~----------------------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~--~~~~~~ 214 (258)
T PRK06949 159 VLP----------------------QIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHW--ETEQGQ 214 (258)
T ss_pred CCC----------------------CccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhcc--ChHHHH
Confidence 110 1245999999999999998776 4899999999999998643211 111111
Q ss_pred HHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEe
Q 020266 215 SLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (328)
Q Consensus 215 ~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~ 256 (328)
. .... .+ ...+...+|+++++.+++.... ..|.....
T Consensus 215 ~-~~~~--~~--~~~~~~p~~~~~~~~~l~~~~~~~~~G~~i~~ 253 (258)
T PRK06949 215 K-LVSM--LP--RKRVGKPEDLDGLLLLLAADESQFINGAIISA 253 (258)
T ss_pred H-HHhc--CC--CCCCcCHHHHHHHHHHHhChhhcCCCCcEEEe
Confidence 1 1111 11 1246678999999999987532 35654433
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=165.00 Aligned_cols=204 Identities=14% Similarity=0.186 Sum_probs=144.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Cc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 82 (328)
|+|+||||||+||.++++.|+++|++|++++|++++...+.... ..++.++.+|++|++++.++++ ++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 75 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWRNI 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999999999999999999866544432221 2368889999999988776654 68
Q ss_pred cEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|+|||+||... ....+.+...+++|+.++..+++++.+. .+.+++|++||.+...+..
T Consensus 76 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------- 142 (248)
T PRK10538 76 DVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYA------------- 142 (248)
T ss_pred CEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCCC-------------
Confidence 99999998632 1122334577899999977777665432 1557899999975433110
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC-CcchHHHHHHHHhCCCCCCCCCcc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT-LNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
..+.|+.+|.+.+.+.+.++.+. ++++++++||.+.|+..... ............. ...
T Consensus 143 ---------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~~~~~~--------~~~ 205 (248)
T PRK10538 143 ---------GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQ--------NTV 205 (248)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHHHhhcc--------ccC
Confidence 12459999999999999988764 79999999999987643211 0000001111111 113
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 020266 230 WVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~ 248 (328)
++.++|+|++++.++..+.
T Consensus 206 ~~~~~dvA~~~~~l~~~~~ 224 (248)
T PRK10538 206 ALTPEDVSEAVWWVATLPA 224 (248)
T ss_pred CCCHHHHHHHHHHHhcCCC
Confidence 5799999999999997653
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=166.43 Aligned_cols=188 Identities=17% Similarity=0.123 Sum_probs=128.5
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|+|+||||+|+||+++++.|+++|++|++++|+.++.......+.......++.++.+|++|.+++.++++
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999999999999999999765544322222211123468899999999998877654
Q ss_pred ---CccEEEEccCCCCC---CCCCcchhhhhHHHHHHHH----HHHHHhcCCCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 ---GCDGVCHTASPFYH---DAKDPQVELLDPAVKGTLN----VLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 ---~~d~vih~a~~~~~---~~~~~~~~~~~~N~~~~~~----l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.++..+++|+.++.. +++.+++. +.++||++||.+...+.. . ......
T Consensus 92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~~~~-~--~~~~~~ 167 (306)
T PRK06197 92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSSGGHRIRAA-I--HFDDLQ 167 (306)
T ss_pred hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECCHHHhccCC-C--CccccC
Confidence 58999999986322 2234455778999999554 55555554 456999999975432111 0 001111
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEE--EcCCcccCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVT--INPAMVIGPLL 202 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~i--lRp~~v~G~~~ 202 (328)
++.+.. +...|+.||++.+.+.+.++.+. ++++++ +.||.|.++..
T Consensus 168 ~~~~~~------~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~ 218 (306)
T PRK06197 168 WERRYN------RVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELA 218 (306)
T ss_pred cccCCC------cHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCccc
Confidence 111111 23569999999999999988764 555554 47999887743
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=164.09 Aligned_cols=214 Identities=17% Similarity=0.160 Sum_probs=153.4
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+....+...+.......++.++.+|+++++++.++++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999876554443333222223468889999999987766554
Q ss_pred --CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+|||+||... ....+.+...+++|+.++.++++++.+. .+.+++|++||.+...+.+
T Consensus 86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~---------- 155 (257)
T PRK09242 86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVR---------- 155 (257)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCC----------
Confidence 5799999998621 1223345577899999999999887542 1446899999975443211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
..+.|+.+|.+.+.+++.++.+ .+++++.++||.+.+|....... ............+ .
T Consensus 156 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~-~~~~~~~~~~~~~-----~ 217 (257)
T PRK09242 156 ------------SGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLS-DPDYYEQVIERTP-----M 217 (257)
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccC-ChHHHHHHHhcCC-----C
Confidence 1245999999999999998765 38999999999999886432211 1222333332221 1
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 020266 228 FGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~ 247 (328)
.-+..++|++.++..++.+.
T Consensus 218 ~~~~~~~~va~~~~~l~~~~ 237 (257)
T PRK09242 218 RRVGEPEEVAAAVAFLCMPA 237 (257)
T ss_pred CCCcCHHHHHHHHHHHhCcc
Confidence 23568899999999998753
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=165.51 Aligned_cols=226 Identities=14% Similarity=0.071 Sum_probs=150.2
Q ss_pred ccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-
Q 020266 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 3 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
+|..+++|+++||||+++||+++++.|++.|++|+++.|+. +....+....... ...++.++++|++|++++.++++
T Consensus 2 ~~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 2 MSNEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK-YGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 44556789999999999999999999999999998887643 3233322222111 13468899999999988877665
Q ss_pred ------CccEEEEccCCCCC-----------CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCC
Q 020266 81 ------GCDGVCHTASPFYH-----------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTG 140 (328)
Q Consensus 81 ------~~d~vih~a~~~~~-----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~ 140 (328)
++|++|||||.... ...+.+...+++|+.+...+.+.+.+.. +.+++|++||.+...+.+
T Consensus 81 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 160 (260)
T PRK08416 81 IDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYIE 160 (260)
T ss_pred HHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCCC
Confidence 57999999975321 1122344667788888777666654431 346899999965332110
Q ss_pred CCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHH
Q 020266 141 KPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI 217 (328)
Q Consensus 141 ~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~ 217 (328)
....|+.+|.+.+.+++.++.++ |+++++|.||.+-.+..... ...........
T Consensus 161 ----------------------~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~-~~~~~~~~~~~ 217 (260)
T PRK08416 161 ----------------------NYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAF-TNYEEVKAKTE 217 (260)
T ss_pred ----------------------CcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhc-cCCHHHHHHHH
Confidence 12349999999999999998875 89999999998876632111 00111111122
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEec
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
... | ...+..++|++.++++++.... ..|.+...+
T Consensus 218 ~~~---~--~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vd 254 (260)
T PRK08416 218 ELS---P--LNRMGQPEDLAGACLFLCSEKASWLTGQTIVVD 254 (260)
T ss_pred hcC---C--CCCCCCHHHHHHHHHHHcChhhhcccCcEEEEc
Confidence 211 1 1236789999999999987532 356444433
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=164.69 Aligned_cols=227 Identities=14% Similarity=0.085 Sum_probs=156.2
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|.++. +++|+++||||+|.||+++++.|+++|++|++++|+.++.+.+...+... ...++.++.+|++|++++.++++
T Consensus 1 ~~~~~-l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 1 MLKID-LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSE-SNVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred CCccC-CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-cCCceEEEEecCCCHHHHHHHHH
Confidence 55654 56899999999999999999999999999999999876554443332211 13468899999999998887775
Q ss_pred ------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCC
Q 020266 81 ------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
.+|++||+||.... ...+.+...+++|+.++..+++++.+. .+.+++|++||.+...+.+
T Consensus 79 ~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~~------ 152 (263)
T PRK08339 79 ELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIP------ 152 (263)
T ss_pred HHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCCC------
Confidence 58999999986321 223456678899998888777765542 1446899999975432110
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC--------CcchHHHHHH
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT--------LNTSAAAVLS 215 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~ 215 (328)
....|+.+|.+.+.+++.++.+. |+++++|.||.+..+..... ..........
T Consensus 153 ----------------~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 216 (263)
T PRK08339 153 ----------------NIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQE 216 (263)
T ss_pred ----------------cchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHH
Confidence 12349999999999999998864 79999999999977631100 0000111111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEe
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLV 256 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~ 256 (328)
... . .| ...+..++|+|.++.+++... ...|.....
T Consensus 217 ~~~-~--~p--~~r~~~p~dva~~v~fL~s~~~~~itG~~~~v 254 (263)
T PRK08339 217 YAK-P--IP--LGRLGEPEEIGYLVAFLASDLGSYINGAMIPV 254 (263)
T ss_pred Hhc-c--CC--cccCcCHHHHHHHHHHHhcchhcCccCceEEE
Confidence 111 1 11 234678999999999998753 235544333
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=164.37 Aligned_cols=193 Identities=18% Similarity=0.127 Sum_probs=145.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC----ccE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG----CDG 84 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~d~ 84 (328)
|++++||||||+||+++++.|+++|++|++++|+++..+.+... ..++.++.+|++|++++.++++. +|.
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~ 74 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDHPGTKAALSQLPFIPEL 74 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHHHHHHhcccCCCE
Confidence 47899999999999999999999999999999976544332221 23578899999999998888764 689
Q ss_pred EEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020266 85 VCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (328)
Q Consensus 85 vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 158 (328)
+||+||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||....++.+
T Consensus 75 ~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~------------------ 136 (240)
T PRK06101 75 WIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELALP------------------ 136 (240)
T ss_pred EEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCCC------------------
Confidence 9999985321 1122344679999999999999988742 235799999965544211
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHH---hcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHH
Q 020266 159 VCKQSELWYPLSKTLAEDAAWKFAK---EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKD 235 (328)
Q Consensus 159 ~~~~~~~~Y~~sK~~~E~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 235 (328)
....|+.+|...+.+.+.++. .+|++++++|||.+++|...... ... ...+.++|
T Consensus 137 ----~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~-----------~~~-------~~~~~~~~ 194 (240)
T PRK06101 137 ----RAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNT-----------FAM-------PMIITVEQ 194 (240)
T ss_pred ----CCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCC-----------CCC-------CcccCHHH
Confidence 123499999999999998874 45899999999999987533210 000 11468999
Q ss_pred HHHHHHHhhcCC
Q 020266 236 VANAHIQAFEVP 247 (328)
Q Consensus 236 ~a~~~~~~~~~~ 247 (328)
+|+.++.+++..
T Consensus 195 ~a~~i~~~i~~~ 206 (240)
T PRK06101 195 ASQEIRAQLARG 206 (240)
T ss_pred HHHHHHHHHhcC
Confidence 999999999874
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=163.93 Aligned_cols=209 Identities=17% Similarity=0.163 Sum_probs=144.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
|++++||||+|+||+++++.|+++|++|+++ .|+.++.......... ...++.++.+|++|++++.++++
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 78 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQ--AGGKAFVLQADISDENQVVAMFTAIDQHDE 78 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh--CCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999875 4554333322222221 12467889999999998887765
Q ss_pred CccEEEEccCCCCCC------CCCcchhhhhHHHHHHHHHHHHHhcC------CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 GCDGVCHTASPFYHD------AKDPQVELLDPAVKGTLNVLNSCAKF------PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ~~d~vih~a~~~~~~------~~~~~~~~~~~N~~~~~~l~~~~~~~------~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|+|||+|+..... ..+.+...+++|+.++.++++++.+. ...++||++||.+++++.+.
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~------- 151 (247)
T PRK09730 79 PLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPG------- 151 (247)
T ss_pred CCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCC-------
Confidence 468999999863211 11234467889999998888766543 12357999999766653210
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|...+.+++.++.+ .+++++++||+.+++|...... ............+ -
T Consensus 152 --------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~--~~~~~~~~~~~~~---~ 212 (247)
T PRK09730 152 --------------EYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGG--EPGRVDRVKSNIP---M 212 (247)
T ss_pred --------------cccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCC--CHHHHHHHHhcCC---C
Confidence 0123999999999999988765 4899999999999999643221 1222233333222 1
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
. ...+++|+++++++++...
T Consensus 213 ~--~~~~~~dva~~~~~~~~~~ 232 (247)
T PRK09730 213 Q--RGGQPEEVAQAIVWLLSDK 232 (247)
T ss_pred C--CCcCHHHHHHHHHhhcChh
Confidence 1 1347999999999988754
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-21 Score=161.61 Aligned_cols=202 Identities=16% Similarity=0.192 Sum_probs=145.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCc-CchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~d~v 85 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+..... ..++.++.+|++++ +.+.+.+..+|+|
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~id~l 71 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL-----------SGNFHFLQLDLSDDLEPLFDWVPSVDIL 71 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc-----------CCcEEEEECChHHHHHHHHHhhCCCCEE
Confidence 45789999999999999999999999999999998754321 23678899999987 3333334578999
Q ss_pred EEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020266 86 CHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (328)
Q Consensus 86 ih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 156 (328)
||+||... ....+.+...+++|+.++.++++++.+. .+.+++|++||.+...+.+
T Consensus 72 v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------------- 135 (235)
T PRK06550 72 CNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGG---------------- 135 (235)
T ss_pred EECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCC----------------
Confidence 99998532 1122345577899999999999987642 1346899999976554211
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeH
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 233 (328)
....|+.+|...+.+.+.++.++ |+++++++||.+.++....... ............ ....+..+
T Consensus 136 ------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~ 203 (235)
T PRK06550 136 ------GGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFE-PGGLADWVARET-----PIKRWAEP 203 (235)
T ss_pred ------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccC-chHHHHHHhccC-----CcCCCCCH
Confidence 12349999999999999988765 8999999999998875322111 111111222211 12346789
Q ss_pred HHHHHHHHHhhcCC
Q 020266 234 KDVANAHIQAFEVP 247 (328)
Q Consensus 234 ~D~a~~~~~~~~~~ 247 (328)
+|+|++++.++.+.
T Consensus 204 ~~~a~~~~~l~s~~ 217 (235)
T PRK06550 204 EEVAELTLFLASGK 217 (235)
T ss_pred HHHHHHHHHHcChh
Confidence 99999999999753
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=165.82 Aligned_cols=226 Identities=15% Similarity=0.160 Sum_probs=149.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-Chhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|+++||||+|+||.++++.|++.|++|+++.++.. ..+......... ....++.++++|+++++++.++++
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 356789999999999999999999999999777766432 222222221111 112468889999999998887665
Q ss_pred ----CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEec-chhhhccCCCCCCCCccc
Q 020266 81 ----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTS-SMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ----~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~S-S~~~~~~~~~~~~~~~~~ 149 (328)
++|++||+||... ....+.+...+++|+.++..+++++.+.. ..+++++++ |....+.+
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~~---------- 154 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFTP---------- 154 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccCC----------
Confidence 5799999998632 22233455788999999999999987642 234677764 43222210
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcch-HHHHHHHHhCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTS-AAAVLSLIKGAQTYPN 225 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.|.+++.++.+. |+++++++||.+.++...+....- ......... ..+.
T Consensus 155 -------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---~~~~ 218 (257)
T PRK12744 155 -------------FYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVAYHKTAAA---LSPF 218 (257)
T ss_pred -------------CcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccchhhccccccc---cccc
Confidence 12449999999999999998875 699999999999877432211100 000000000 0112
Q ss_pred CCccceeHHHHHHHHHHhhcCCC-CCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS-ANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~-~~g-~~~~~~ 257 (328)
....+.+++|++.++..++.... ..| .+++.+
T Consensus 219 ~~~~~~~~~dva~~~~~l~~~~~~~~g~~~~~~g 252 (257)
T PRK12744 219 SKTGLTDIEDIVPFIRFLVTDGWWITGQTILING 252 (257)
T ss_pred ccCCCCCHHHHHHHHHHhhcccceeecceEeecC
Confidence 22358899999999999998532 134 555544
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=165.90 Aligned_cols=204 Identities=15% Similarity=0.127 Sum_probs=146.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Cc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 82 (328)
|+|+||||||+||+++++.|+++|++|++++|+.++.......+.. ...++.++.+|++|++++.++++ .+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLRE--AGGDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999999999999987654443332222 13468889999999988777664 68
Q ss_pred cEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|+|||+||..... ..+.+...+++|+.++.++++++ ++. +.+++|++||..++.+.+
T Consensus 79 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~vsS~~~~~~~~------------- 144 (270)
T PRK05650 79 DVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQ-KSGRIVNIASMAGLMQGP------------- 144 (270)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEECChhhcCCCC-------------
Confidence 9999999974321 11234456789998888877765 444 557899999975543211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcch---HHHHHHHHhCCCCCCCCC
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTS---AAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 227 (328)
..+.|+.+|.+.+.+.+.++.+. |+++++++|+.+.++......... ...+.....
T Consensus 145 ---------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--------- 206 (270)
T PRK05650 145 ---------AMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLE--------- 206 (270)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHHHhh---------
Confidence 12459999999999998888864 899999999999887543211111 111111111
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 020266 228 FGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~ 247 (328)
..+++++|+|+.++.++.+.
T Consensus 207 ~~~~~~~~vA~~i~~~l~~~ 226 (270)
T PRK05650 207 KSPITAADIADYIYQQVAKG 226 (270)
T ss_pred cCCCCHHHHHHHHHHHHhCC
Confidence 23579999999999999864
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-21 Score=169.75 Aligned_cols=207 Identities=14% Similarity=0.124 Sum_probs=150.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||+++++.|+++|++|++++|+.+..+.+....... ..++.++.+|++|++++.++++
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL--GAEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999876655443333221 3467888999999998887763
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|++|||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||...+.+.+
T Consensus 83 g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p----------- 151 (330)
T PRK06139 83 GRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQP----------- 151 (330)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCC-----------
Confidence 58999999986322 122334567999999999988876542 1346899999976543211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+.+.+.+.++.+ .+++++++.||.+.+|....... . .+... ...
T Consensus 152 -----------~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~--------~-~~~~~--~~~ 209 (330)
T PRK06139 152 -----------YAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN--------Y-TGRRL--TPP 209 (330)
T ss_pred -----------CchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc--------c-ccccc--cCC
Confidence 1245999999988888888765 27999999999999885432110 0 01110 111
Q ss_pred ccceeHHHHHHHHHHhhcCCC
Q 020266 228 FGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~ 248 (328)
..+.+++|+|++++.++.++.
T Consensus 210 ~~~~~pe~vA~~il~~~~~~~ 230 (330)
T PRK06139 210 PPVYDPRRVAKAVVRLADRPR 230 (330)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 236799999999999998764
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-21 Score=163.02 Aligned_cols=209 Identities=18% Similarity=0.179 Sum_probs=145.4
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+|+||||+|+||.+++++|+++|++|++++|+......+.... ...++++|+++++++.++++
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV-------GGLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc-------CCcEEEeeCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999765443322221 12578899999988877765
Q ss_pred --CccEEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 --GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 --~~d~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||....++...
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~~------- 149 (255)
T PRK06057 77 YGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSAT------- 149 (255)
T ss_pred cCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCCC-------
Confidence 57999999986321 112235577889999998888876531 14468999999655553210
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+.+.++.+ .++++++++||.+.+|..............+.... .+
T Consensus 150 --------------~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~---~~- 211 (255)
T PRK06057 150 --------------SQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRLVH---VP- 211 (255)
T ss_pred --------------CCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHhc---CC-
Confidence 1234999999888888776554 37999999999999885432211111111111111 12
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+.+++|+++++..++...
T Consensus 212 -~~~~~~~~~~a~~~~~l~~~~ 232 (255)
T PRK06057 212 -MGRFAEPEEIAAAVAFLASDD 232 (255)
T ss_pred -CCCCcCHHHHHHHHHHHhCcc
Confidence 125789999999998888653
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=162.42 Aligned_cols=209 Identities=18% Similarity=0.169 Sum_probs=149.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|+|+||||||+||.++++.|++.|++|+++ .|+.++...+...... ...++.++.+|++|++++.++++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999998 8876654443332221 23468899999999998877665
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.+.+++.+
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~---------- 150 (247)
T PRK05565 81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGAS---------- 150 (247)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCC----------
Confidence 68999999987421 122334577889999999998877653 1456799999977665321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.+. |++++++|||.+.++....... .......... + .
T Consensus 151 ------------~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~---~~~~~~~~~~---~--~ 210 (247)
T PRK05565 151 ------------CEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSE---EDKEGLAEEI---P--L 210 (247)
T ss_pred ------------CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccCh---HHHHHHHhcC---C--C
Confidence 12349999999998888887753 8999999999987764332111 1111111111 1 2
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 020266 228 FGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~ 247 (328)
..+..++|+++.++.++...
T Consensus 211 ~~~~~~~~va~~~~~l~~~~ 230 (247)
T PRK05565 211 GRLGKPEEIAKVVLFLASDD 230 (247)
T ss_pred CCCCCHHHHHHHHHHHcCCc
Confidence 34679999999999998764
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-21 Score=165.41 Aligned_cols=203 Identities=20% Similarity=0.167 Sum_probs=146.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------- 80 (328)
||+++||||||+||++++++|+++|++|++++|+.+....+..... ..++.++++|++|++++.++++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999998765444333221 3468899999999988776654
Q ss_pred CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 ~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
.+|+||||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||..+.++..
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------ 144 (260)
T PRK08267 77 RLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQP------------ 144 (260)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCC------------
Confidence 46999999987432 112334577899999999999887542 1457899999976666421
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.+|.+.+.+.+.++.+ .++++++++|+.+..+....... ......... ...
T Consensus 145 ----------~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~---~~~~~~~~~-------~~~ 204 (260)
T PRK08267 145 ----------GLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSN---EVDAGSTKR-------LGV 204 (260)
T ss_pred ----------CchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccc---hhhhhhHhh-------ccC
Confidence 1244999999999999998765 47999999999987764321000 000111110 111
Q ss_pred ceeHHHHHHHHHHhhcCC
Q 020266 230 WVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~ 247 (328)
.+.++|++++++.++.++
T Consensus 205 ~~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 205 RLTPEDVAEAVWAAVQHP 222 (260)
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 367799999999999754
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=163.43 Aligned_cols=200 Identities=20% Similarity=0.170 Sum_probs=145.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++++|+||||+|+||++++++|++.|++|++++|++.+...+...+.. ..++.++.+|+++++++.++++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN---KGNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc---cCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3468999999999999999999999999999999987554443332221 1468899999999988777665
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC--CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF--PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|+|||+|+.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.+...+..
T Consensus 81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~------------ 148 (237)
T PRK07326 81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFFA------------ 148 (237)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCCC------------
Confidence 68999999986432 122234467889999999998887653 1346899999975432110
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.+|.+.+.+++.++.+ .|++++++||+.+.++...... +.....
T Consensus 149 ----------~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~-----------------~~~~~~ 201 (237)
T PRK07326 149 ----------GGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTP-----------------SEKDAW 201 (237)
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccccc-----------------chhhhc
Confidence 1234999999999999887654 4899999999998776422110 000001
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 020266 230 WVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~ 248 (328)
.+.++|+++.++.++..+.
T Consensus 202 ~~~~~d~a~~~~~~l~~~~ 220 (237)
T PRK07326 202 KIQPEDIAQLVLDLLKMPP 220 (237)
T ss_pred cCCHHHHHHHHHHHHhCCc
Confidence 3789999999999998764
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=188.20 Aligned_cols=223 Identities=21% Similarity=0.182 Sum_probs=157.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||+++++.|+++|++|++++|+.+........+.. ..++.++.+|++|++++.++++
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~---~~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG---PDRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc---cCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999987655443332221 1468899999999988877665
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCc-cEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSI-KRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+. ++||++||.+++++.+
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~---------- 566 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGP---------- 566 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCC----------
Confidence 68999999996332 223345577899999999998877542 132 6899999976554211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCccc-CCCCCCCCcchHHHHHHHHhCCC-----
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVI-GPLLQPTLNTSAAAVLSLIKGAQ----- 221 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~~~~~----- 221 (328)
....|+.+|.+.+.+++.++.+. |+++++++|+.+| ++...... + ........+.+
T Consensus 567 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~--~-~~~~~~~~g~~~~~~~ 631 (681)
T PRK08324 567 ------------NFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGE--W-IEARAAAYGLSEEELE 631 (681)
T ss_pred ------------CcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccch--h-hhhhhhhccCChHHHH
Confidence 12459999999999999998765 6999999999998 55422110 0 00000111110
Q ss_pred -CC--CCCCccceeHHHHHHHHHHhhc--CCCCCC-cEEEec
Q 020266 222 -TY--PNVTFGWVNVKDVANAHIQAFE--VPSANG-RYCLVE 257 (328)
Q Consensus 222 -~~--~~~~~~~v~v~D~a~~~~~~~~--~~~~~g-~~~~~~ 257 (328)
.+ +...+.+++++|+|+++..++. .....| .+++.+
T Consensus 632 ~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdg 673 (681)
T PRK08324 632 EFYRARNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDG 673 (681)
T ss_pred HHHHhcCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence 01 2345679999999999999884 333455 677754
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=162.53 Aligned_cols=224 Identities=14% Similarity=0.068 Sum_probs=155.2
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCe-EEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
..+++|+|+||||+|+||+.+++.|+++|++ |++++|+.++.......... ...++.++.+|+++++++.++++
T Consensus 2 ~~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK06198 2 GRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEA--LGAKAVFVQADLSDVEDCRRVVAAAD 79 (260)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 3456889999999999999999999999999 99999976554432222211 23467889999999988777664
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC----CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.. ..+++|++||.+.+.+.+
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~------- 152 (260)
T PRK06198 80 EAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQP------- 152 (260)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCC-------
Confidence 57999999986431 1223344678899999999998876531 235799999976544211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC----cchHHHHHHHHhCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL----NTSAAAVLSLIKGA 220 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~~~~~ 220 (328)
....|+.+|...|.+++.++.++ +++++.++|+.+.++...... .....++..... .
T Consensus 153 ---------------~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~-~ 216 (260)
T PRK06198 153 ---------------FLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAA-T 216 (260)
T ss_pred ---------------CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhc-c
Confidence 12459999999999999988764 699999999999988532100 011122222111 1
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.....+++++|+++++.+++.... ..| .+.+.+
T Consensus 217 ----~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~ 252 (260)
T PRK06198 217 ----QPFGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQ 252 (260)
T ss_pred ----CCccCCcCHHHHHHHHHHHcChhhCCccCceEeECC
Confidence 112347899999999999987543 245 444443
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=163.31 Aligned_cols=220 Identities=18% Similarity=0.143 Sum_probs=151.0
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
||+. .+++|+++||||+|+||+++++.|+++|++|++++|+.++...............++..+.+|++|++++.++++
T Consensus 1 m~~~-~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (265)
T PRK07062 1 MMQI-QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAA 79 (265)
T ss_pred CCcc-ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHH
Confidence 4443 467899999999999999999999999999999999876655443333222222467889999999988776654
Q ss_pred -------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCC
Q 020266 81 -------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 -------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
.+|+||||||.... ...+.+...+++|+.+...+++++.+. .+.+++|++||.....+.+
T Consensus 80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 154 (265)
T PRK07062 80 AVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPEP----- 154 (265)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCCC-----
Confidence 57999999986321 122345577888998888887766542 1346899999975443111
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC-------cchHHHHHH
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-------NTSAAAVLS 215 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~ 215 (328)
....|+.+|.+.+.+++.++.+ .|+++++++||.+..+...... .....+...
T Consensus 155 -----------------~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 217 (265)
T PRK07062 155 -----------------HMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAA 217 (265)
T ss_pred -----------------CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHH
Confidence 1234999999999999888776 4899999999999776422100 001111111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
... ....| ...+..++|+|+++.+++..
T Consensus 218 ~~~-~~~~p--~~r~~~p~~va~~~~~L~s~ 245 (265)
T PRK07062 218 LAR-KKGIP--LGRLGRPDEAARALFFLASP 245 (265)
T ss_pred Hhh-cCCCC--cCCCCCHHHHHHHHHHHhCc
Confidence 111 11111 22467899999999998874
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=163.22 Aligned_cols=198 Identities=17% Similarity=0.156 Sum_probs=145.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----CccE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDG 84 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~ 84 (328)
||+|+||||+|+||.+++++|+++|++|++++|+.++........... ...++.++++|+++++++.++++ .+|+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR-GAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-cCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 578999999999999999999999999999999876544433222211 23478999999999998887765 4699
Q ss_pred EEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020266 85 VCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (328)
Q Consensus 85 vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 156 (328)
|||+||..... ..+...+.+++|+.++.++++++.+. .+.+++|++||..+..+.+
T Consensus 80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------------- 143 (243)
T PRK07102 80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRA---------------- 143 (243)
T ss_pred EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCCC----------------
Confidence 99999863321 11223356889999999999887652 1457899999975443211
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeH
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 233 (328)
....|+.+|...+.+++.++.+ .|+++++++|+.+.++..... . .+. .....+
T Consensus 144 ------~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~~---------------~-~~~--~~~~~~ 199 (243)
T PRK07102 144 ------SNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAGL---------------K-LPG--PLTAQP 199 (243)
T ss_pred ------CCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhcc---------------C-CCc--cccCCH
Confidence 1134999999999999988654 489999999999988732110 0 011 125689
Q ss_pred HHHHHHHHHhhcCC
Q 020266 234 KDVANAHIQAFEVP 247 (328)
Q Consensus 234 ~D~a~~~~~~~~~~ 247 (328)
+|+++.++.+++++
T Consensus 200 ~~~a~~i~~~~~~~ 213 (243)
T PRK07102 200 EEVAKDIFRAIEKG 213 (243)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999864
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=163.38 Aligned_cols=212 Identities=16% Similarity=0.127 Sum_probs=151.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||++++++|+++|++|++++|+.++........... ..++.++++|++|++++.++++
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL--GIEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999999999998876554433333221 2468899999999998877775
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|+|||+||.... ...+.+...+++|+.++..+++++.+. .+.++||++||....++.+
T Consensus 86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 154 (265)
T PRK07097 86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRE----------- 154 (265)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCCC-----------
Confidence 47999999997432 223345577889999999888877542 1457899999975544211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc-----chHHHHHHHHhCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN-----TSAAAVLSLIKGAQTY 223 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-----~~~~~~~~~~~~~~~~ 223 (328)
....|+.+|.+.+.+++.++.+. |++++.|+||.+.++....... ....+........
T Consensus 155 -----------~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--- 220 (265)
T PRK07097 155 -----------TVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKT--- 220 (265)
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcC---
Confidence 12449999999999999998875 8999999999998875322100 0001111111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
+ ...+..++|+|..+..++...
T Consensus 221 ~--~~~~~~~~dva~~~~~l~~~~ 242 (265)
T PRK07097 221 P--AARWGDPEDLAGPAVFLASDA 242 (265)
T ss_pred C--ccCCcCHHHHHHHHHHHhCcc
Confidence 1 123678999999999998763
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=162.24 Aligned_cols=206 Identities=13% Similarity=0.085 Sum_probs=144.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecC-CCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
++|+++||||+|+||+++++.|++.|++|++..++ .+....+... . ..++.++.+|++|++++.++++
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADE---L--GDRAIALQADVTDREQVQAMFATATEHF 78 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH---h--CCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999887653 3222222211 1 2468889999999988877765
Q ss_pred -C-ccEEEEccCCCC-----------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCC
Q 020266 81 -G-CDGVCHTASPFY-----------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 -~-~d~vih~a~~~~-----------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
. +|+|||+|+... ....+.+.+.+++|+.++.++++++.+. .+.+++|++||.. ... +
T Consensus 79 g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~-~~~-~---- 152 (253)
T PRK08642 79 GKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNL-FQN-P---- 152 (253)
T ss_pred CCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcc-ccC-C----
Confidence 2 899999997521 1112234467899999999999988642 1446899999953 211 0
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
.. +.+.|+.+|.+.|.+++.++++ .+++++.++||.+..+...... ............+
T Consensus 153 ----------~~------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~--~~~~~~~~~~~~~ 214 (253)
T PRK08642 153 ----------VV------PYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAAT--PDEVFDLIAATTP 214 (253)
T ss_pred ----------CC------CccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccC--CHHHHHHHHhcCC
Confidence 00 1245999999999999999886 3799999999998776322111 1122222222111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+.+++|+++++.+++...
T Consensus 215 -----~~~~~~~~~va~~~~~l~~~~ 235 (253)
T PRK08642 215 -----LRKVTTPQEFADAVLFFASPW 235 (253)
T ss_pred -----cCCCCCHHHHHHHHHHHcCch
Confidence 234889999999999999753
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=162.49 Aligned_cols=222 Identities=18% Similarity=0.166 Sum_probs=151.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.... ........ ...++.++.+|+++++++.++++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~-~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPEIE-KLADELCG--RGHRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHH-HHHHHHHH--hCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999976422 21111111 13467889999999988877665
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||........
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------- 149 (263)
T PRK08226 81 GRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVAD----------- 149 (263)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccCC-----------
Confidence 57999999996322 112233456889999999999987642 1346899999964322100
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC-----cchHHHHHHHHhCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL-----NTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~ 223 (328)
+ ....|+.+|.+.+.+++.++.++ +++++.++||.+.++...... ......+..+..+.|
T Consensus 150 -----~-----~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p-- 217 (263)
T PRK08226 150 -----P-----GETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIP-- 217 (263)
T ss_pred -----C-----CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCC--
Confidence 0 12449999999999999998764 799999999999887422100 001122233332221
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
...+..++|+++++.+++... ...|.....+
T Consensus 218 ---~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~d 250 (263)
T PRK08226 218 ---LRRLADPLEVGELAAFLASDESSYLTGTQNVID 250 (263)
T ss_pred ---CCCCCCHHHHHHHHHHHcCchhcCCcCceEeEC
Confidence 223679999999998888643 3355444444
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-21 Score=164.45 Aligned_cols=214 Identities=16% Similarity=0.108 Sum_probs=147.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
||+++||||+|+||+++++.|+++|++|++++|+..+...+.. .++.++.+|+++++++.++++ +
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 72 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA--------AGFTAVQLDVNDGAALARLAEELEAEHGG 72 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999999999999998654433211 246788999999988776663 5
Q ss_pred ccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC--CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF--PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 82 ~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
+|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.+...+.+
T Consensus 73 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------- 138 (274)
T PRK05693 73 LDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVTP-------------- 138 (274)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCCC--------------
Confidence 8999999986321 122344577889999999999987542 1336899999976544211
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC----------cchHHHHHHHHhCCC
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL----------NTSAAAVLSLIKGAQ 221 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~----------~~~~~~~~~~~~~~~ 221 (328)
....|+.+|.+.+.+.+.++.+ +|+++++++||.+.++...... ...............
T Consensus 139 --------~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (274)
T PRK05693 139 --------FAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHIQARAR 210 (274)
T ss_pred --------CccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccccccccccchhhcCCCCCccHHHHHHHHHHHH
Confidence 1245999999999999888765 5899999999999876322110 001111111110000
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCCCCcEEE
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCL 255 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~ 255 (328)
........++|+|+.++.++.++.....|.+
T Consensus 211 ---~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 241 (274)
T PRK05693 211 ---ASQDNPTPAAEFARQLLAAVQQSPRPRLVRL 241 (274)
T ss_pred ---hccCCCCCHHHHHHHHHHHHhCCCCCceEEe
Confidence 0001235789999999999987554444443
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-21 Score=161.55 Aligned_cols=205 Identities=15% Similarity=0.117 Sum_probs=143.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---C
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---G 81 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~ 81 (328)
.+++|+|+||||+|+||+++++.|+++|++|+++.|+. +..+.+... .++.++.+|++|.+.+.++++ .
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQE-------TGATAVQTDSADRDAVIDVVRKSGA 75 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHH-------hCCeEEecCCCCHHHHHHHHHHhCC
Confidence 35578999999999999999999999999998877643 222222111 135678899999887777665 4
Q ss_pred ccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC-CCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020266 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 82 ~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
+|+|||+||.... ...+.+...+++|+.++.+++..+.+. ...+++|++||...... + .
T Consensus 76 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~-~--------~------ 140 (237)
T PRK12742 76 LDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRM-P--------V------ 140 (237)
T ss_pred CcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccC-C--------C------
Confidence 8999999986321 122345678999999999998776654 23468999999643210 0 0
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcccee
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (328)
.....|+.+|.+.|.+++.++.+ .++++++++||.+..+...... .. ........ + ...+..
T Consensus 141 ------~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~----~~-~~~~~~~~--~--~~~~~~ 205 (237)
T PRK12742 141 ------AGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANG----PM-KDMMHSFM--A--IKRHGR 205 (237)
T ss_pred ------CCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcccccc----HH-HHHHHhcC--C--CCCCCC
Confidence 01245999999999999998775 3799999999999887532211 11 11111111 1 123678
Q ss_pred HHHHHHHHHHhhcCC
Q 020266 233 VKDVANAHIQAFEVP 247 (328)
Q Consensus 233 v~D~a~~~~~~~~~~ 247 (328)
++|+++++.+++...
T Consensus 206 p~~~a~~~~~l~s~~ 220 (237)
T PRK12742 206 PEEVAGMVAWLAGPE 220 (237)
T ss_pred HHHHHHHHHHHcCcc
Confidence 999999999998754
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=158.40 Aligned_cols=199 Identities=18% Similarity=0.149 Sum_probs=142.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------G 81 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~ 81 (328)
++|+|+||||+|+||++++++|+++|++|++++|+..+.. ..+++.+|++|++++.++++ +
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~-------------~~~~~~~D~~~~~~~~~~~~~~~~~~~ 68 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDDF-------------PGELFACDLADIEQTAATLAQINEIHP 68 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccccc-------------CceEEEeeCCCHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999999765411 12578899999988777665 5
Q ss_pred ccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 82 ~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
+|+|||+|+..... ..+.+...+++|+.++.++++++.+. .+.+++|++||.+ .++.+
T Consensus 69 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~-~~~~~------------- 134 (234)
T PRK07577 69 VDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRA-IFGAL------------- 134 (234)
T ss_pred CcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcccc-ccCCC-------------
Confidence 89999999974321 12334467889999988887766442 1457899999975 33211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
....|+.+|...+.+++.++.+ +|++++++|||.+.++.................... + ...+
T Consensus 135 ---------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~---~--~~~~ 200 (234)
T PRK07577 135 ---------DRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASI---P--MRRL 200 (234)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcC---C--CCCC
Confidence 1245999999999999988765 489999999999988753211110111111222211 1 1225
Q ss_pred eeHHHHHHHHHHhhcCC
Q 020266 231 VNVKDVANAHIQAFEVP 247 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~ 247 (328)
..++|+|++++.++..+
T Consensus 201 ~~~~~~a~~~~~l~~~~ 217 (234)
T PRK07577 201 GTPEEVAAAIAFLLSDD 217 (234)
T ss_pred cCHHHHHHHHHHHhCcc
Confidence 58899999999998764
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=161.66 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=146.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+++||||+|+||+++++.|+++|++|++++|+.++...+...........++.++.+|+++++++.++++ +
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999999999876554443332222223468899999999988766554 6
Q ss_pred ccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 82 ~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
+|+|||+||..... ..+.+...+++|+.++.++++++... .+.+++|++||.....+.+
T Consensus 82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 148 (248)
T PRK08251 82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLP------------- 148 (248)
T ss_pred CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCC-------------
Confidence 89999999863221 12233467889999999998876532 1557899999976555321
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
. +...|+.||.+.+.+.+.++.+. ++++++++||.+.++..... .. ....
T Consensus 149 --~------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~------------~~-------~~~~ 201 (248)
T PRK08251 149 --G------VKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAKA------------KS-------TPFM 201 (248)
T ss_pred --C------CcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhcc------------cc-------CCcc
Confidence 0 12459999999999998887653 78999999999987642210 00 1135
Q ss_pred eeHHHHHHHHHHhhcCC
Q 020266 231 VNVKDVANAHIQAFEVP 247 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~ 247 (328)
++.+|.|++++.++++.
T Consensus 202 ~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 202 VDTETGVKALVKAIEKE 218 (248)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 78999999999999864
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=159.68 Aligned_cols=218 Identities=19% Similarity=0.148 Sum_probs=151.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
++|+|+||||+|+||+++++.|+++|++|+++.|+... ...+...... ...++.++.+|+++++++.++++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEA--AGGRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999888775432 2222222211 23468899999999988877765
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.. ..+++|++||.+...+.+
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~------------- 148 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPLP------------- 148 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCCC-------------
Confidence 58999999986432 1222345678899999999998887642 235899999964332110
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
..+.|+.+|.+.+.+++.++.++ ++++++++||.+-++...... .......+....+ ...+
T Consensus 149 ---------~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~--~~~~~~~~~~~~~-----~~~~ 212 (245)
T PRK12937 149 ---------GYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGK--SAEQIDQLAGLAP-----LERL 212 (245)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccC--CHHHHHHHHhcCC-----CCCC
Confidence 12459999999999999987753 799999999988776421111 1223333333221 1235
Q ss_pred eeHHHHHHHHHHhhcCCC--CCC-cEEEe
Q 020266 231 VNVKDVANAHIQAFEVPS--ANG-RYCLV 256 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~--~~g-~~~~~ 256 (328)
.+++|+++++.+++..+. ..| .+++.
T Consensus 213 ~~~~d~a~~~~~l~~~~~~~~~g~~~~~~ 241 (245)
T PRK12937 213 GTPEEIAAAVAFLAGPDGAWVNGQVLRVN 241 (245)
T ss_pred CCHHHHHHHHHHHcCccccCccccEEEeC
Confidence 688999999999987643 245 44443
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=162.28 Aligned_cols=209 Identities=18% Similarity=0.153 Sum_probs=148.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.++.+.+.... ..++.++++|++|++++.++++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQTVDAF 78 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999876544433221 2357889999999988777664
Q ss_pred -CccEEEEccCCCCC------CCCC----cchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 -GCDGVCHTASPFYH------DAKD----PQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 -~~d~vih~a~~~~~------~~~~----~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
.+|++||+||.... ...+ .+...+++|+.++..+++++.+.. ..+++|++||.+.+.+.+
T Consensus 79 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------- 151 (263)
T PRK06200 79 GKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGG------- 151 (263)
T ss_pred CCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCCC-------
Confidence 58999999996321 1111 144678899999999998887531 235799999976554211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCC--------cchHHHHHHHH
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTL--------NTSAAAVLSLI 217 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~--------~~~~~~~~~~~ 217 (328)
....|+.+|.+.+.+++.++.+. +++++++.||.+..+...... ...... ....
T Consensus 152 ---------------~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~-~~~~ 215 (263)
T PRK06200 152 ---------------GGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGL-ADMI 215 (263)
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccch-hHHh
Confidence 12349999999999999998874 589999999999876422100 000111 1111
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
... .| ...+..++|+++++.+++...
T Consensus 216 ~~~--~p--~~r~~~~~eva~~~~fl~s~~ 241 (263)
T PRK06200 216 AAI--TP--LQFAPQPEDHTGPYVLLASRR 241 (263)
T ss_pred hcC--CC--CCCCCCHHHHhhhhhheeccc
Confidence 111 11 234778999999999998754
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=161.71 Aligned_cols=216 Identities=14% Similarity=0.094 Sum_probs=149.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
++|+|+||||+|+||+++++.|+++|++|+++.++.. ....+...... ...++.++.+|+++++++.++++
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRS--HGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3679999999999999999999999999988876433 33333222222 23468899999999988777665
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC----CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+.. ..+++|++||.....+.+
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~---------- 148 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLP---------- 148 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCC----------
Confidence 57999999986432 1223455778999999999999876531 235899999965333110
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.+. +++++.++||.+.+|...... .........+. +.
T Consensus 149 ------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~---~~~~~~~~~~~---~~-- 208 (256)
T PRK12743 149 ------------GASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD---SDVKPDSRPGI---PL-- 208 (256)
T ss_pred ------------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC---hHHHHHHHhcC---CC--
Confidence 12459999999999999988753 799999999999988532211 11111111111 11
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCCcEEE
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCL 255 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g~~~~ 255 (328)
..+.+++|+++++..++.... ..|.+..
T Consensus 209 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~ 238 (256)
T PRK12743 209 GRPGDTHEIASLVAWLCSEGASYTTGQSLI 238 (256)
T ss_pred CCCCCHHHHHHHHHHHhCccccCcCCcEEE
Confidence 125689999999999887543 3564433
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=159.66 Aligned_cols=219 Identities=15% Similarity=0.147 Sum_probs=148.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|+++.|+..+.. ..+. ..++.++.+|++|++++.++++
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~--~~l~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEA--KELR-----EKGVFTIKCDVGNRDQVKKSKEVVEKEF 77 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHH--HHHH-----hCCCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999998876543221 1111 1147789999999998877765
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.+...+++|+.++..+++++.+. .+.+++|++||.+.+....
T Consensus 78 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~----------- 146 (255)
T PRK06463 78 GRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAA----------- 146 (255)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCC-----------
Confidence 57999999986321 123345577899999976665554432 1456899999975443110
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC-cchHHHHHHHHhCCCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-NTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 227 (328)
.....|+.+|.+.+.+++.++.+ .|+++++++||.+-.+...... .............. ...
T Consensus 147 ----------~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~----~~~ 212 (255)
T PRK06463 147 ----------EGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNK----TVL 212 (255)
T ss_pred ----------CCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhC----CCc
Confidence 01245999999999999999876 4899999999998766321110 00001112222222 112
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
..+..++|+++++++++.... ..| .+.+.+
T Consensus 213 ~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dg 245 (255)
T PRK06463 213 KTTGKPEDIANIVLFLASDDARYITGQVIVADG 245 (255)
T ss_pred CCCcCHHHHHHHHHHHcChhhcCCCCCEEEECC
Confidence 346789999999999987543 345 444443
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=159.05 Aligned_cols=215 Identities=15% Similarity=0.105 Sum_probs=150.3
Q ss_pred CCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 7 AAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 7 ~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
+++|+++||||+ +.||++++++|+++|++|++.+|+....+.+... ...++.++++|++|++++.++++
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL-----VDEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh-----ccCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 568999999999 7999999999999999999999873211111111 12357889999999988777654
Q ss_pred ---CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ---GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ---~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|++|||||.... ...+.+...+++|+.++..+++++.+.. ..+++|++||.+...+.+
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~~------- 152 (252)
T PRK06079 80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERAIP------- 152 (252)
T ss_pred HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccccCC-------
Confidence 58999999986321 1233456778999999999998887642 235899999965432100
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.+|.+.+.+++.++.+ +|+++++|.||.|-.+....... ............ |
T Consensus 153 ---------------~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~-~~~~~~~~~~~~---p 213 (252)
T PRK06079 153 ---------------NYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKG-HKDLLKESDSRT---V 213 (252)
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCC-hHHHHHHHHhcC---c
Confidence 1245999999999999999886 48999999999998774221111 112222222211 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCC--CCCCcEE
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVP--SANGRYC 254 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~ 254 (328)
...+..++|+|+++.+++... ...|...
T Consensus 214 --~~r~~~pedva~~~~~l~s~~~~~itG~~i 243 (252)
T PRK06079 214 --DGVGVTIEEVGNTAAFLLSDLSTGVTGDII 243 (252)
T ss_pred --ccCCCCHHHHHHHHHHHhCcccccccccEE
Confidence 123778999999999998753 2355443
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=159.31 Aligned_cols=218 Identities=15% Similarity=0.130 Sum_probs=153.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++++++||||+|+||+.+++.|+++|++|++++|+..+.......... ...++.++++|+++++++.++++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGA--LGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999987554433332221 13468889999999887766554
Q ss_pred -CccEEEEccCCCCC--------------CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCC
Q 020266 81 -GCDGVCHTASPFYH--------------DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGK 141 (328)
Q Consensus 81 -~~d~vih~a~~~~~--------------~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~ 141 (328)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+. ....++|++||.+ .++.+
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~-~~~~~- 158 (253)
T PRK08217 81 GQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIA-RAGNM- 158 (253)
T ss_pred CCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEcccc-ccCCC-
Confidence 47999999985321 111233456789999998877655432 1234799999964 34211
Q ss_pred CCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHh
Q 020266 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK 218 (328)
Q Consensus 142 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~ 218 (328)
....|+.+|.+.+.+++.++.+ .+++++.++|+.+.++..... ..........
T Consensus 159 ---------------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~---~~~~~~~~~~ 214 (253)
T PRK08217 159 ---------------------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAM---KPEALERLEK 214 (253)
T ss_pred ---------------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc---CHHHHHHHHh
Confidence 1244999999999999998875 589999999999988754321 1223333333
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCCCCC-cEEEec
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~ 257 (328)
..+ ...+.+++|+|+++..++......| .+++.+
T Consensus 215 ~~~-----~~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~g 249 (253)
T PRK08217 215 MIP-----VGRLGEPEEIAHTVRFIIENDYVTGRVLEIDG 249 (253)
T ss_pred cCC-----cCCCcCHHHHHHHHHHHHcCCCcCCcEEEeCC
Confidence 222 2347799999999999997654456 666654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=162.18 Aligned_cols=200 Identities=16% Similarity=0.123 Sum_probs=146.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||+++++.|+++|++|++++|+.+..+.+....... ..++.++.+|++|++++.++++
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--GGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999876554443332221 2457889999999998877776
Q ss_pred -CccEEEEccCCCCCCC-------CCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 -GCDGVCHTASPFYHDA-------KDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 -~~d~vih~a~~~~~~~-------~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||...... .+.+...+++|+.|+.++++++. +. +.+++|++||.+.+.+..
T Consensus 116 g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~-------- 186 (293)
T PRK05866 116 GGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLER-GDGHIINVATWGVLSEAS-------- 186 (293)
T ss_pred CCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEECChhhcCCCC--------
Confidence 6899999998642211 12234678899999888888764 33 557899999965332100
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
+ ..+.|+.+|.+.+.+++.++.+. ++++++++||.+-++...... . .
T Consensus 187 -----p--------~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~~-----------~-~----- 236 (293)
T PRK05866 187 -----P--------LFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPTK-----------A-Y----- 236 (293)
T ss_pred -----C--------CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccccc-----------c-c-----
Confidence 0 12459999999999999987764 899999999988776432110 0 0
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.....+.++++|+.++.++++.
T Consensus 237 ~~~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 237 DGLPALTADEAAEWMVTAARTR 258 (293)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC
Confidence 0112468999999999999864
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=159.41 Aligned_cols=215 Identities=16% Similarity=0.148 Sum_probs=150.6
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Ccc
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GCD 83 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 83 (328)
|+|||++|+||+++++.|+++|++|++++|+.. ....+...... ...++.++.+|++|++++.+++. .+|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKA--YGVKALGVVCDVSDREDVKAVVEEIEEELGPID 78 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998752 22222222211 12358899999999998877664 469
Q ss_pred EEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020266 84 GVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 84 ~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
+|||+||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.+.+++.+
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~--------------- 143 (239)
T TIGR01830 79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNA--------------- 143 (239)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCC---------------
Confidence 99999997432 122334577889999999999988753 1456899999976666421
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcccee
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (328)
....|+.+|.+.+.+++.++.+ .|++++++||+.+.++..... ............+ ...+.+
T Consensus 144 -------~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~ 208 (239)
T TIGR01830 144 -------GQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKL---SEKVKKKILSQIP-----LGRFGT 208 (239)
T ss_pred -------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhc---ChHHHHHHHhcCC-----cCCCcC
Confidence 1244999999999998888765 489999999998877643221 1112222222211 223678
Q ss_pred HHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 233 VKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
++|++++++.++...+ ..| .||+.++
T Consensus 209 ~~~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 209 PEEVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 9999999998885532 244 6777543
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-20 Score=158.79 Aligned_cols=210 Identities=14% Similarity=0.101 Sum_probs=147.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+++||||+|+||+++++.|+++|++|++++|+..+...+....... ..++.++.+|++|++++.++++ .
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF--PGQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999999999999876554443333221 2468899999999988877664 5
Q ss_pred ccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 82 CDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 82 ~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
+|+|||+||... ....+.+...+++|+.++.++++++.+. ...+++|++||.....+..
T Consensus 79 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~------------ 146 (252)
T PRK07677 79 IDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGP------------ 146 (252)
T ss_pred ccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCC------------
Confidence 799999998522 1223335578999999999999988542 1236899999964322100
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+++.++.+ +|+++++++||.+.++..............++.... + ..
T Consensus 147 ----------~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~---~--~~ 211 (252)
T PRK07677 147 ----------GVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSV---P--LG 211 (252)
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccC---C--CC
Confidence 1234999999999999987776 379999999999985432111101122222333221 1 12
Q ss_pred cceeHHHHHHHHHHhhcCC
Q 020266 229 GWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~ 247 (328)
.+..++|+++++..++...
T Consensus 212 ~~~~~~~va~~~~~l~~~~ 230 (252)
T PRK07677 212 RLGTPEEIAGLAYFLLSDE 230 (252)
T ss_pred CCCCHHHHHHHHHHHcCcc
Confidence 3678999999998887653
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=179.50 Aligned_cols=227 Identities=18% Similarity=0.107 Sum_probs=153.3
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|++|||||+|+||++++++|+++|++|++++|+.+....+...+.......++..+.+|++|++++.++++
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~ 489 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL 489 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999876554433332211122357789999999998887775
Q ss_pred ---CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhc----CCCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAK----FPSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||..... ..+.+...+++|+.+...+.+.+.+ ....+++|++||..++++.+
T Consensus 490 ~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~-------- 561 (676)
T TIGR02632 490 AYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGK-------- 561 (676)
T ss_pred hcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCC--------
Confidence 689999999964321 1223456788899988777655443 21235899999976665311
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCccc-CCCCCCCCcc---------hHHHHHH
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVI-GPLLQPTLNT---------SAAAVLS 215 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~-G~~~~~~~~~---------~~~~~~~ 215 (328)
....|+.+|.+.+.+++.++.+ .|+++++++|+.|+ |.+....... ....+..
T Consensus 562 --------------~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 627 (676)
T TIGR02632 562 --------------NASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEE 627 (676)
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHH
Confidence 1245999999999999998886 37999999999987 3322111000 0000111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
.... ......+++++|+|+++.+++... ...| .+++.+
T Consensus 628 ~~~~----r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDG 668 (676)
T TIGR02632 628 HYAK----RTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDG 668 (676)
T ss_pred HHHh----cCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECC
Confidence 1111 122345789999999999887643 2346 445543
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=158.97 Aligned_cols=209 Identities=15% Similarity=0.115 Sum_probs=143.0
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecC-CCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Cc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 82 (328)
+++||||+|+||+++++.|+++|++|++++|+ .+..+.+............+..+++|++|++++.++++ ++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 38999999999999999999999999999997 44444433332221111234568899999998776664 57
Q ss_pred cEEEEccCCCCCC-----CCCcchhhhhHHHH----HHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPFYHD-----AKDPQVELLDPAVK----GTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~~~~-----~~~~~~~~~~~N~~----~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|+|||+||..... ..+.+...+++|+. ++..++.++++. +.++||++||..++.+.+
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~ss~~~~~~~~------------- 146 (251)
T PRK07069 81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS-QPASIVNISSVAAFKAEP------------- 146 (251)
T ss_pred cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCcEEEEecChhhccCCC-------------
Confidence 9999999864321 12234466788988 666677777665 567999999976554211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc-----CccEEEEcCCcccCCCCCCCCcc--hHHHHHHHHhCCCCCCCC
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNT--SAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|.+.+.+++.++.+. ++++++++|+.+.+|........ ..........+. .
T Consensus 147 ---------~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-----~ 212 (251)
T PRK07069 147 ---------DYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGV-----P 212 (251)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccC-----C
Confidence 12349999999999999887753 48999999999998864321100 011111222221 1
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+.+++|++++++.++..+
T Consensus 213 ~~~~~~~~~va~~~~~l~~~~ 233 (251)
T PRK07069 213 LGRLGEPDDVAHAVLYLASDE 233 (251)
T ss_pred CCCCcCHHHHHHHHHHHcCcc
Confidence 223568999999999987654
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=158.78 Aligned_cols=216 Identities=19% Similarity=0.182 Sum_probs=146.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
+|+|+||||+|+||+.+++.|+++|++|+++.+ +++........... ...++.++++|+++++++.++++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRA--AGGRACVVAGDVANEADVIAMFDAVQSAFG 79 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999987654 43333332222221 12468899999999988776554
Q ss_pred CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCCC------ccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFPS------IKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+... ..++|++||.++.++.+.
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~------- 152 (248)
T PRK06947 80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPN------- 152 (248)
T ss_pred CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCC-------
Confidence 58999999986321 11222345688999999888765443211 246999999776653210
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+++.++.+. +++++++|||.+.+|...... ........ .... +.
T Consensus 153 --------------~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~--~~~~~~~~-~~~~--~~ 213 (248)
T PRK06947 153 --------------EYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGG--QPGRAARL-GAQT--PL 213 (248)
T ss_pred --------------CCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccC--CHHHHHHH-hhcC--CC
Confidence 01349999999999999988764 799999999999988532111 11111111 1111 11
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCCcEE
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~ 254 (328)
..+..++|+++.++.++.++. ..|.+.
T Consensus 214 --~~~~~~e~va~~~~~l~~~~~~~~~G~~~ 242 (248)
T PRK06947 214 --GRAGEADEVAETIVWLLSDAASYVTGALL 242 (248)
T ss_pred --CCCcCHHHHHHHHHHHcCccccCcCCceE
Confidence 124689999999999988653 355443
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=159.68 Aligned_cols=202 Identities=20% Similarity=0.142 Sum_probs=140.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------- 80 (328)
+|+|+||||+|+||.++++.|+++|++|+++.|+.++.+.+.. .++..+.+|++|.+++.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 73 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS--------LGFTGILLDLDDPESVERAADEVIALTDN 73 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh--------CCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 3689999999999999999999999999999998655433211 246788999999877655443
Q ss_pred CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHH----HHHHhcCCCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNV----LNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l----~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|.+||+||.... ...+.+...+++|+.|+.++ ++++++. +.+++|++||.++..+.+
T Consensus 74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~~ss~~~~~~~~----------- 141 (256)
T PRK08017 74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPH-GEGRIVMTSSVMGLISTP----------- 141 (256)
T ss_pred CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCCEEEEEcCcccccCCC-----------
Confidence 46899999986321 12223446789999998876 4555555 567899999964433110
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHH---hcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC--CCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK---EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY--PNV 226 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 226 (328)
..+.|+.+|...|.+.+.++. ..+++++++|||.+.++...... ......+.. +..
T Consensus 142 -----------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~--------~~~~~~~~~~~~~~ 202 (256)
T PRK08017 142 -----------GRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVN--------QTQSDKPVENPGIA 202 (256)
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhccc--------chhhccchhhhHHH
Confidence 124599999999998876544 35899999999887655321100 000001111 122
Q ss_pred CccceeHHHHHHHHHHhhcCCCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVPSA 249 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~~ 249 (328)
.+.+++++|+++++..++.++..
T Consensus 203 ~~~~~~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 203 ARFTLGPEAVVPKLRHALESPKP 225 (256)
T ss_pred hhcCCCHHHHHHHHHHHHhCCCC
Confidence 34579999999999999987654
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-20 Score=161.20 Aligned_cols=217 Identities=18% Similarity=0.152 Sum_probs=149.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC---------CChhhhhhhhhccCCCCcEEEEEccCCCcCchH
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP---------NDPKKTRHLLALDGASERLQLFKANLLEEGSFD 76 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 76 (328)
.+++|+++||||++.||+++++.|++.|++|++++|+. +....+...+.. ...++.++.+|++|++++.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dv~~~~~v~ 80 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVA--AGGEAVANGDDIADWDGAA 80 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHh--cCCceEEEeCCCCCHHHHH
Confidence 45689999999999999999999999999999998765 222222222211 1346788999999998877
Q ss_pred HhhC-------CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---------CccEEEEecchhh
Q 020266 77 SIVD-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---------SIKRVVLTSSMAA 135 (328)
Q Consensus 77 ~~~~-------~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~ 135 (328)
++++ .+|++|||||... ....+.+...+++|+.++.++++++.+.. ..++||++||.+.
T Consensus 81 ~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~ 160 (286)
T PRK07791 81 NLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG 160 (286)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence 6654 5799999998733 22234456789999999999988775321 1258999999765
Q ss_pred hccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHH
Q 020266 136 VLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAA 212 (328)
Q Consensus 136 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~ 212 (328)
..+.+ ....|+.+|.+.+.+++.++.+ +|++++.|.|+ +..+.. ...
T Consensus 161 ~~~~~----------------------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~-------~~~ 210 (286)
T PRK07791 161 LQGSV----------------------GQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMT-------ETV 210 (286)
T ss_pred CcCCC----------------------CchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcc-------hhh
Confidence 55211 1245999999999999998886 48999999998 433321 111
Q ss_pred HHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 213 VLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
........ +.....+..++|+++++++++... ...|.+...+
T Consensus 211 ~~~~~~~~---~~~~~~~~~pedva~~~~~L~s~~~~~itG~~i~vd 254 (286)
T PRK07791 211 FAEMMAKP---EEGEFDAMAPENVSPLVVWLGSAESRDVTGKVFEVE 254 (286)
T ss_pred HHHHHhcC---cccccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEc
Confidence 11211111 111123568999999999998753 2366554443
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-20 Score=157.78 Aligned_cols=203 Identities=17% Similarity=0.132 Sum_probs=142.7
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCc--CchHHhh---
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE--GSFDSIV--- 79 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~--- 79 (328)
..|++|+++||||+|+||+++++.|+++|++|++++|+......+...+.... ...+.++.+|+++. +++.+++
T Consensus 2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~i 80 (239)
T PRK08703 2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG-HPEPFAIRFDLMSAEEKEFEQFAATI 80 (239)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC-CCCcceEEeeecccchHHHHHHHHHH
Confidence 34567899999999999999999999999999999998765544333322111 23567788999763 3343332
Q ss_pred -----CCccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCC
Q 020266 80 -----DGCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 80 -----~~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
..+|+|||+||.... ...+.+...+++|+.++.++++++.+. .+..++|++||.....+.
T Consensus 81 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~------ 154 (239)
T PRK08703 81 AEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPK------ 154 (239)
T ss_pred HHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCC------
Confidence 357999999986321 112233456889999999998887653 134689999995433210
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc----CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
+ ....|+.+|.+.+.+++.++.+. ++++++++||.+.+|...... .+
T Consensus 155 -----------~-----~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~-----------~~-- 205 (239)
T PRK08703 155 -----------A-----YWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSH-----------PG-- 205 (239)
T ss_pred -----------C-----CccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccC-----------CC--
Confidence 0 12349999999999999998874 599999999999998532110 01
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcC
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
.........+|++.++..++..
T Consensus 206 ---~~~~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 206 ---EAKSERKSYGDVLPAFVWWASA 227 (239)
T ss_pred ---CCccccCCHHHHHHHHHHHhCc
Confidence 1112356899999999999873
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=157.18 Aligned_cols=216 Identities=16% Similarity=0.176 Sum_probs=149.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhh-ccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
+|+++||||+|+||+++++.|+++|++|++++|+... ....... ......++.++.+|+++.+++.++++
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 79 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGND--CAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG 79 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHH--HHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999998542 1111111 11123468899999999988777664
Q ss_pred CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|+|||+||... ....+.+...+++|+.++.++++++ ++. +.++||++||.....+.+
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~~~~~~~~----------- 147 (245)
T PRK12824 80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSVNGLKGQF----------- 147 (245)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECChhhccCCC-----------
Confidence 4899999998632 1223345577889999999986654 444 457999999975443211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+++.++.+ .++++++++|+.+.++...... ........... ...
T Consensus 148 -----------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~---~~~~~~~~~~~-----~~~ 208 (245)
T PRK12824 148 -----------GQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMG---PEVLQSIVNQI-----PMK 208 (245)
T ss_pred -----------CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC---HHHHHHHHhcC-----CCC
Confidence 1234999999999999888764 4899999999999887533221 12222222221 123
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.+..++|+++++..++.... ..| .+++.+
T Consensus 209 ~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~ 240 (245)
T PRK12824 209 RLGTPEEIAAAVAFLVSEAAGFITGETISING 240 (245)
T ss_pred CCCCHHHHHHHHHHHcCccccCccCcEEEECC
Confidence 46688999999988886432 234 555544
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=157.59 Aligned_cols=214 Identities=18% Similarity=0.129 Sum_probs=151.7
Q ss_pred EEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---CccEEEEcc
Q 020266 13 CVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCDGVCHTA 89 (328)
Q Consensus 13 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~vih~a 89 (328)
+||||+|+||++++++|+++|++|++++|+.++...+....+ ...++.++.+|++|++++.++++ .+|++||++
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~a 77 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALG---GGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITA 77 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECC
Confidence 699999999999999999999999999998654433322221 12468889999999999988886 479999999
Q ss_pred CCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 90 SPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 90 ~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
+.... ...+.+...+++|+.++.+++++.... +.+++|++||.+++.+.+ +.
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~g~iv~~ss~~~~~~~~----------------------~~ 134 (230)
T PRK07041 78 ADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIA-PGGSLTFVSGFAAVRPSA----------------------SG 134 (230)
T ss_pred CCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhc-CCeEEEEECchhhcCCCC----------------------cc
Confidence 86332 122345578899999999999965544 567999999976544211 12
Q ss_pred chhhhhhHHHHHHHHHHHHhc-CccEEEEcCCcccCCCCCCCCc-chHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHH
Q 020266 165 LWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~ 242 (328)
+.|+.+|.+.+.+++.++.+. ++++++++|+.+-++....... .....+.......+ . ..+..++|+|+++..
T Consensus 135 ~~Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~dva~~~~~ 209 (230)
T PRK07041 135 VLQGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLP---A--RRVGQPEDVANAILF 209 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCC---C--CCCcCHHHHHHHHHH
Confidence 459999999999999998774 6899999999887664211000 01112222222211 1 124578999999999
Q ss_pred hhcCCCCCC-cEEEec
Q 020266 243 AFEVPSANG-RYCLVE 257 (328)
Q Consensus 243 ~~~~~~~~g-~~~~~~ 257 (328)
++..+...| .|++.+
T Consensus 210 l~~~~~~~G~~~~v~g 225 (230)
T PRK07041 210 LAANGFTTGSTVLVDG 225 (230)
T ss_pred HhcCCCcCCcEEEeCC
Confidence 998764555 666654
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=160.02 Aligned_cols=219 Identities=18% Similarity=0.147 Sum_probs=150.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Cc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 82 (328)
|+++||||+|+||.++++.|++.|++|+++.|+......+...... ...++.++.+|++|++++.++++ .+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQ--AGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999999985544333332221 13468899999999998877654 57
Q ss_pred cEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhc----CCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAK----FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|+|||+|+.... ...+.+...+++|+.++..+++++.+ ....+++|++||....++.+
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 145 (254)
T TIGR02415 79 DVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNP------------- 145 (254)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCC-------------
Confidence 999999986332 12233446788999999888776654 21236899999976665321
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc--------chHHHHHHHHhCCCC
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLIKGAQT 222 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--------~~~~~~~~~~~~~~~ 222 (328)
..+.|+.+|.+.+.+++.++.+. ++++++++||.+.++....... ............
T Consensus 146 ---------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 213 (254)
T TIGR02415 146 ---------ILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFSSE--- 213 (254)
T ss_pred ---------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHHHhh---
Confidence 12459999999999999887764 7999999999887664211000 000001111110
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCCC--CCcEEEec
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLVE 257 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~~~--~g~~~~~~ 257 (328)
.....+.+++|+++++.+++.+... .|.++..+
T Consensus 214 --~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d 248 (254)
T TIGR02415 214 --IALGRPSEPEDVAGLVSFLASEDSDYITGQSILVD 248 (254)
T ss_pred --CCCCCCCCHHHHHHHHHhhcccccCCccCcEEEec
Confidence 1112378999999999999987543 46555444
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-20 Score=157.10 Aligned_cols=225 Identities=14% Similarity=0.079 Sum_probs=154.8
Q ss_pred CcccccCCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 1 MSSVAAAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
|-+..++++|+++||||+ +.||++++++|+++|++|++.+|+.+..+.+....... ....++++|++|++++.++
T Consensus 2 ~~~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~ 78 (258)
T PRK07533 2 MQPLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAV 78 (258)
T ss_pred CCcccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHH
Confidence 445556778999999998 59999999999999999999999754333333322221 2345788999999988776
Q ss_pred hC-------CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCC
Q 020266 79 VD-------GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGK 141 (328)
Q Consensus 79 ~~-------~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~ 141 (328)
++ .+|++|||||.... ...+.+...+++|+.++.++++++.+.. ..+++|++||.+...+.
T Consensus 79 ~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~~-- 156 (258)
T PRK07533 79 FARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKVV-- 156 (258)
T ss_pred HHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccCC--
Confidence 64 57999999986421 1233456889999999999999877652 22579999986432210
Q ss_pred CCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHh
Q 020266 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK 218 (328)
Q Consensus 142 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~ 218 (328)
+ ....|+.+|.+.+.+.+.++.+ +|+++.+|.||.+-.+..... ............
T Consensus 157 ---------------~-----~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~ 215 (258)
T PRK07533 157 ---------------E-----NYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGI-DDFDALLEDAAE 215 (258)
T ss_pred ---------------c-----cchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhcc-CCcHHHHHHHHh
Confidence 0 1245999999999999998876 479999999999977642211 111122222222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEe
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLV 256 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~ 256 (328)
.. | ...+..++|++.++++++... ...|.....
T Consensus 216 ~~---p--~~r~~~p~dva~~~~~L~s~~~~~itG~~i~v 250 (258)
T PRK07533 216 RA---P--LRRLVDIDDVGAVAAFLASDAARRLTGNTLYI 250 (258)
T ss_pred cC---C--cCCCCCHHHHHHHHHHHhChhhccccCcEEee
Confidence 11 1 223678999999999998753 235544333
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=156.56 Aligned_cols=197 Identities=13% Similarity=0.131 Sum_probs=140.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+.|+|+||||+|+||++++++|+++| ++|++++|+++. .+.+...+.... ..++.++.+|++|++++.++++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHhc
Confidence 47899999999999999999999995 999999998775 444333332221 2368899999999987655443
Q ss_pred -CccEEEEccCCCCCCC---CCc--chhhhhHHHHHHHHH----HHHHhcCCCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYHDA---KDP--QVELLDPAVKGTLNV----LNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~~~---~~~--~~~~~~~N~~~~~~l----~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++||++|...... .+. ..+.+++|+.++..+ ++.+++. +.++||++||.....+.
T Consensus 86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~-~~~~iv~isS~~g~~~~----------- 153 (253)
T PRK07904 86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ-GFGQIIAMSSVAGERVR----------- 153 (253)
T ss_pred CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc-CCceEEEEechhhcCCC-----------
Confidence 6899999998743211 111 113589999988774 5555555 56799999997543210
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
+ ....|+.||.+...+.+.++.+ +++++++++||.+..+..... ...
T Consensus 154 ---~--------~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~~------------~~~------- 203 (253)
T PRK07904 154 ---R--------SNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAHA------------KEA------- 203 (253)
T ss_pred ---C--------CCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhccC------------CCC-------
Confidence 0 1234999999999887776554 589999999999987632110 000
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 020266 228 FGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+.++|+|+.++.++.++
T Consensus 204 ~~~~~~~~~A~~i~~~~~~~ 223 (253)
T PRK07904 204 PLTVDKEDVAKLAVTAVAKG 223 (253)
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 11468999999999999865
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-20 Score=156.87 Aligned_cols=218 Identities=16% Similarity=0.131 Sum_probs=151.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||++++++|++.|++|+++++... ......... ...++..+++|++|++++.++++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTA--LGRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56799999999999999999999999999998877542 121112211 12467889999999988877775
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC----CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|++|||||.... ...+.+.+.+++|+.++.++++++.+.. ..+++|++||..++.+.+
T Consensus 84 ~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 153 (253)
T PRK08993 84 GHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGI---------- 153 (253)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCC----------
Confidence 58999999986321 2234566889999999999998876531 235899999976544211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+.+.++.+ +|++++.++||.+..+....... ...........- |.
T Consensus 154 ------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~-~~~~~~~~~~~~---p~-- 215 (253)
T PRK08993 154 ------------RVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRA-DEQRSAEILDRI---PA-- 215 (253)
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhcc-chHHHHHHHhcC---CC--
Confidence 0124999999999999999886 48999999999998874321100 011111222211 21
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCCcEEEe
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~ 256 (328)
..+..++|+++++..++.... ..|.....
T Consensus 216 ~r~~~p~eva~~~~~l~s~~~~~~~G~~~~~ 246 (253)
T PRK08993 216 GRWGLPSDLMGPVVFLASSASDYINGYTIAV 246 (253)
T ss_pred CCCcCHHHHHHHHHHHhCccccCccCcEEEE
Confidence 237789999999999997542 24544333
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-20 Score=159.23 Aligned_cols=211 Identities=17% Similarity=0.193 Sum_probs=146.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh-------hhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-------TRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.+.... ...... ....++.++.+|+++++++.+++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIE--AAGGQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHH--hcCCceEEEEecCCCHHHHHHHH
Confidence 457899999999999999999999999999999997653211 111111 12346888999999999887766
Q ss_pred C-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCC
Q 020266 80 D-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 80 ~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
+ ++|+|||+||.... ...+.+...+++|+.++.++++++.+.. +..++|++||.....+.
T Consensus 82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~----- 156 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPK----- 156 (273)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcccc-----
Confidence 5 68999999986321 1123345678899999999999987531 23579999985322100
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCc-ccCCCCCCCCcchHHHHHHHHhCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAM-VIGPLLQPTLNTSAAAVLSLIKGA 220 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~-v~G~~~~~~~~~~~~~~~~~~~~~ 220 (328)
.+ .+.+.|+.+|.+.|.+++.++.+. +++++.+.|+. +-.+.. .....+.
T Consensus 157 --------~~-------~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~~-----------~~~~~~~ 210 (273)
T PRK08278 157 --------WF-------APHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAAV-----------RNLLGGD 210 (273)
T ss_pred --------cc-------CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHHH-----------Hhccccc
Confidence 00 023459999999999999998875 79999999984 333211 1111111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEE
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~ 254 (328)
.....+..++|++++++.++.... ..|.+.
T Consensus 211 ----~~~~~~~~p~~va~~~~~l~~~~~~~~~G~~~ 242 (273)
T PRK08278 211 ----EAMRRSRTPEIMADAAYEILSRPAREFTGNFL 242 (273)
T ss_pred ----ccccccCCHHHHHHHHHHHhcCccccceeEEE
Confidence 112236789999999999987643 345443
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=156.77 Aligned_cols=209 Identities=13% Similarity=0.108 Sum_probs=144.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
|++|+++||||+|+||+++++.|+++|++|++..+ +............ ....++..+.+|++|.+++.++++
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQK--ALGFDFIASEGNVGDWDSTKAAFDKVKAE 78 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999888654 3222222111111 113457788999999988777664
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.....+.+
T Consensus 79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 148 (246)
T PRK12938 79 VGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQF---------- 148 (246)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCCC----------
Confidence 58999999987432 123345577899999988877765442 1456899999965443211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.+ .++++++++||.+.+|..... ....+....... ..
T Consensus 149 ------------~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~---~~~~~~~~~~~~-----~~ 208 (246)
T PRK12938 149 ------------GQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI---RPDVLEKIVATI-----PV 208 (246)
T ss_pred ------------CChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhc---ChHHHHHHHhcC-----Cc
Confidence 1245999999999998888765 489999999999988754321 112222222221 12
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 020266 228 FGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~ 247 (328)
..+..++|++.++++++...
T Consensus 209 ~~~~~~~~v~~~~~~l~~~~ 228 (246)
T PRK12938 209 RRLGSPDEIGSIVAWLASEE 228 (246)
T ss_pred cCCcCHHHHHHHHHHHcCcc
Confidence 33668999999999988753
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=154.23 Aligned_cols=205 Identities=16% Similarity=0.150 Sum_probs=143.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+++||||+|+||+++++.|+++|++|++++|++++... .... .++.++.+|++|++++.++++ +
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~---~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 74 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAID---GLRQ----AGAQCIQADFSTNAGIMAFIDELKQHTDG 74 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHH---HHHH----cCCEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence 5789999999999999999999999999999997654321 1111 136788999999988776654 4
Q ss_pred ccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcCC---C--ccEEEEecchhhhccCCCCCCCCccccC
Q 020266 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP---S--IKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 82 ~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
+|++||+||..... ..+.+...+++|+.++..+.+++.+.. + .+++|++||.....+.+
T Consensus 75 id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~----------- 143 (236)
T PRK06483 75 LRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGSD----------- 143 (236)
T ss_pred ccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCCC-----------
Confidence 89999999863211 233456788999999988877665531 2 35899999964332110
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.+|.+.+.+++.++.++ ++++++|+||.+..+.... ...........+ ..-
T Consensus 144 -----------~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~-----~~~~~~~~~~~~-----~~~ 202 (236)
T PRK06483 144 -----------KHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDD-----AAYRQKALAKSL-----LKI 202 (236)
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCC-----HHHHHHHhccCc-----ccc
Confidence 12449999999999999999875 5999999999885432111 111112222111 112
Q ss_pred ceeHHHHHHHHHHhhcCCCCCCc
Q 020266 230 WVNVKDVANAHIQAFEVPSANGR 252 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~~~g~ 252 (328)
+..++|+++++.+++......|.
T Consensus 203 ~~~~~~va~~~~~l~~~~~~~G~ 225 (236)
T PRK06483 203 EPGEEEIIDLVDYLLTSCYVTGR 225 (236)
T ss_pred CCCHHHHHHHHHHHhcCCCcCCc
Confidence 45789999999999975555663
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=156.15 Aligned_cols=213 Identities=13% Similarity=0.066 Sum_probs=147.5
Q ss_pred cCCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|+++||||+ +.||+++++.|+++|++|++.+|+....+.+..+..... ..++.++++|++|++++.++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHH
Confidence 3568999999997 899999999999999999999886433333333332221 2467889999999998777664
Q ss_pred ----CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCC
Q 020266 81 ----GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ----~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
.+|++|||||.... ...+.+...+++|+.++..+++++.+.. ...++|++||.+...+.+
T Consensus 83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~------ 156 (257)
T PRK08594 83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERVVQ------ 156 (257)
T ss_pred HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccCCC------
Confidence 57999999986421 1122344678899999998888877652 236899999975432100
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.||.+.+.+++.++.++ |+++++|.||.+..+..... ............ . .
T Consensus 157 ----------------~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~-~--~ 216 (257)
T PRK08594 157 ----------------NYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGV-GGFNSILKEIEE-R--A 216 (257)
T ss_pred ----------------CCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhh-ccccHHHHHHhh-c--C
Confidence 12349999999999999998754 79999999999987632110 000111111111 1 1
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
| ...+..++|+++++++++...
T Consensus 217 p--~~r~~~p~~va~~~~~l~s~~ 238 (257)
T PRK08594 217 P--LRRTTTQEEVGDTAAFLFSDL 238 (257)
T ss_pred C--ccccCCHHHHHHHHHHHcCcc
Confidence 1 223678999999999998753
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=165.03 Aligned_cols=234 Identities=18% Similarity=0.108 Sum_probs=155.7
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
+..+++|+++||||||+||.++++.|+++|++|++++|+.++.......+.......++.++.+|++|.++++++++
T Consensus 9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999876654433333222223468899999999998877664
Q ss_pred ----CccEEEEccCCCCC----CCCCcchhhhhHHHHHHHHHHHHHhcC--CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 ----GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKF--PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 ----~~d~vih~a~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|++|||||.... ...+.++..+++|+.+...+++.+.+. .+..++|++||.+..++.. ....++
T Consensus 89 ~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~----~~~~~~ 164 (313)
T PRK05854 89 AEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAI----NWDDLN 164 (313)
T ss_pred HhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCc----Cccccc
Confidence 48999999997432 233556678999999988888877642 1235899999976554311 111222
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh-----cCccEEEEcCCcccCCCCCC--CC----cchHHHHHHHHhC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQP--TL----NTSAAAVLSLIKG 219 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~--~~----~~~~~~~~~~~~~ 219 (328)
++.... +...|+.||.+.+.+.+.++++ .|++++++.||.+..+.... .. ..+...+.+.+..
T Consensus 165 ~~~~~~------~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (313)
T PRK05854 165 WERSYA------GMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAARPEVGRDKDTLMVRLIRSLSA 238 (313)
T ss_pred ccccCc------chhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCccccccccccchhHHHHHHHHHHhh
Confidence 222211 2356999999999999998763 37999999999997764211 10 0111111111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCCC-CCcE
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPSA-NGRY 253 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~-~g~~ 253 (328)
.. .-+..+++-+...+.++..+.. .|.|
T Consensus 239 ~~------~~~~~~~~ga~~~l~~a~~~~~~~g~~ 267 (313)
T PRK05854 239 RG------FLVGTVESAILPALYAATSPDAEGGAF 267 (313)
T ss_pred cc------cccCCHHHHHHHhhheeeCCCCCCCcE
Confidence 10 0134677888888877765543 3544
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=156.06 Aligned_cols=213 Identities=21% Similarity=0.149 Sum_probs=150.8
Q ss_pred cCCCCeEEEECCcc-HHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASG-YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||+| .||+++++.|+++|++|++.+|+..+.+.....+.......++.++++|+++++++.++++
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 34578999999997 6999999999999999999998766544433222211112368889999999988777664
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---C-ccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|+||||||.... ...+.+...+++|+.++..+++++.+.. . .+++|++||.+...+.+
T Consensus 94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~-------- 165 (262)
T PRK07831 94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQH-------- 165 (262)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCC--------
Confidence 57999999986321 1223455678899999999888776521 2 45899999865433110
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+++.++.+ +|+++++++||.+..|...... .......+....+
T Consensus 166 --------------~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~--~~~~~~~~~~~~~---- 225 (262)
T PRK07831 166 --------------GQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT--SAELLDELAAREA---- 225 (262)
T ss_pred --------------CCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc--CHHHHHHHHhcCC----
Confidence 1244999999999999999876 5899999999999988533211 1223333333221
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+..++|+++++++++...
T Consensus 226 -~~r~~~p~~va~~~~~l~s~~ 246 (262)
T PRK07831 226 -FGRAAEPWEVANVIAFLASDY 246 (262)
T ss_pred -CCCCcCHHHHHHHHHHHcCch
Confidence 234678999999999988754
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=161.88 Aligned_cols=212 Identities=20% Similarity=0.192 Sum_probs=149.1
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|.....+++|+++||||+|+||+++++.|+++|++|++++|+..... ..++.++++|++|++++.++++
T Consensus 1 ~~~~~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~ 69 (266)
T PRK06171 1 MQDWLNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ-----------HENYQFVPTDVSSAEEVNHTVA 69 (266)
T ss_pred CcccccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc-----------cCceEEEEccCCCHHHHHHHHH
Confidence 55555667899999999999999999999999999999998765432 1367889999999988877665
Q ss_pred -------CccEEEEccCCCCC--------------CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhh
Q 020266 81 -------GCDGVCHTASPFYH--------------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAV 136 (328)
Q Consensus 81 -------~~d~vih~a~~~~~--------------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~ 136 (328)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||....
T Consensus 70 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 149 (266)
T PRK06171 70 EIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGL 149 (266)
T ss_pred HHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Confidence 57999999986321 1223345678999999999999887541 33589999997654
Q ss_pred ccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCccc-CCCCCCCC------
Q 020266 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVI-GPLLQPTL------ 206 (328)
Q Consensus 137 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~-G~~~~~~~------ 206 (328)
.+.+ ....|+.+|.+.+.+++.++.+ .|+++++++||.+. .+......
T Consensus 150 ~~~~----------------------~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~ 207 (266)
T PRK06171 150 EGSE----------------------GQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAY 207 (266)
T ss_pred CCCC----------------------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhcc
Confidence 4211 1245999999999999999876 48999999999885 22211100
Q ss_pred --cchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 207 --NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 207 --~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
......+..........| ...+..++|+|.++.+++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~p--~~r~~~~~eva~~~~fl~s~~ 248 (266)
T PRK06171 208 TRGITVEQLRAGYTKTSTIP--LGRSGKLSEVADLVCYLLSDR 248 (266)
T ss_pred ccCCCHHHHHhhhccccccc--CCCCCCHHHhhhheeeeeccc
Confidence 000011111111100112 234678999999999998753
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=157.05 Aligned_cols=219 Identities=15% Similarity=0.087 Sum_probs=150.3
Q ss_pred CCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 7 AAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
|++|+++||||++ .||+++++.|++.|++|++.+|+....+.+..+....+ ....+++|++|++++.++++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999997 99999999999999999999887533333333222111 23468899999998877664
Q ss_pred ---CccEEEEccCCCC---------CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ---GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ---~~d~vih~a~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
.+|++|||||... ....+.+...+++|+.++.++++++.+.. ..+++|++||.+...+.+
T Consensus 82 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~~~------- 154 (271)
T PRK06505 82 KWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRVMP------- 154 (271)
T ss_pred HhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccccCC-------
Confidence 5899999998642 12234466788999999999998877642 225899999975433110
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.+|.+.+.+++.++.+. |+++++|.||.+-.+....... . ........... |
T Consensus 155 ---------------~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~-~-~~~~~~~~~~~--p 215 (271)
T PRK06505 155 ---------------NYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGD-A-RAIFSYQQRNS--P 215 (271)
T ss_pred ---------------ccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcc-h-HHHHHHHhhcC--C
Confidence 12459999999999999998874 7999999999998764221100 0 11111111111 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCCcEEEe
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~ 256 (328)
...+..++|+|+++++++.... ..|.....
T Consensus 216 --~~r~~~peeva~~~~fL~s~~~~~itG~~i~v 247 (271)
T PRK06505 216 --LRRTVTIDEVGGSALYLLSDLSSGVTGEIHFV 247 (271)
T ss_pred --ccccCCHHHHHHHHHHHhCccccccCceEEee
Confidence 1235689999999999987532 35644333
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-20 Score=158.54 Aligned_cols=203 Identities=18% Similarity=0.154 Sum_probs=147.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++++++||||+|+||+++++.|+++|++|++++|+.++...+...+ ....++.++.+|++|++.+.++++
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL---PYPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999999999999866554433332 123578899999999988776654
Q ss_pred CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 ~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
.+|+|||+||.... ...+.+...+++|+.|+.++++++.+. .+.+++|++||.....+.+
T Consensus 80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------ 147 (263)
T PRK09072 80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYP------------ 147 (263)
T ss_pred CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCC------------
Confidence 57999999986432 112234467889999999999988652 1346799999965544211
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.+|.+.+.+++.++.+ .+++++++.||.+.++...... ... . ......
T Consensus 148 ----------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~~-------~~~-~-----~~~~~~ 204 (263)
T PRK09072 148 ----------GYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEAV-------QAL-N-----RALGNA 204 (263)
T ss_pred ----------CccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhhc-------ccc-c-----ccccCC
Confidence 1244999999999999888876 3799999999988765321100 000 0 001123
Q ss_pred ceeHHHHHHHHHHhhcCC
Q 020266 230 WVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~ 247 (328)
...++|+|++++.++++.
T Consensus 205 ~~~~~~va~~i~~~~~~~ 222 (263)
T PRK09072 205 MDDPEDVAAAVLQAIEKE 222 (263)
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 678999999999999975
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-20 Score=157.68 Aligned_cols=214 Identities=17% Similarity=0.111 Sum_probs=142.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC------ 82 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------ 82 (328)
||+++||||+|+||++++++|+++|++|++++|++.+ .+...... ...++.++++|+++++++.++++.+
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~--~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENK--ELTKLAEQ--YNSNLTFHSLDLQDVHELETNFNEILSSIQE 76 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchH--HHHHHHhc--cCCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence 4789999999999999999999999999999997632 12222211 1346889999999999888777521
Q ss_pred -----cEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCc
Q 020266 83 -----DGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 83 -----d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
+++||+||... ....+.+...+++|+.++..+++.+.+. ...+++|++||..+..+.
T Consensus 77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------- 148 (251)
T PRK06924 77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPY-------- 148 (251)
T ss_pred ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCC--------
Confidence 27899998632 1223334567888998877776655442 234589999996432210
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh-----cCccEEEEcCCcccCCCCCC---CCcchHHHHHHHHhC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQP---TLNTSAAAVLSLIKG 219 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~~~ 219 (328)
.+...|+.+|.+.+.+++.++.+ ++++++.|+||.+-.+.... ...............
T Consensus 149 --------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 214 (251)
T PRK06924 149 --------------FGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITL 214 (251)
T ss_pred --------------CCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHH
Confidence 01345999999999999988765 36999999999887653210 000000111111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcC-CCCCCcE
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEV-PSANGRY 253 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~-~~~~g~~ 253 (328)
. +. ..+..++|+|++++.++.. ....|.+
T Consensus 215 ~---~~--~~~~~~~dva~~~~~l~~~~~~~~G~~ 244 (251)
T PRK06924 215 K---EE--GKLLSPEYVAKALRNLLETEDFPNGEV 244 (251)
T ss_pred h---hc--CCcCCHHHHHHHHHHHHhcccCCCCCE
Confidence 0 11 1268999999999999886 3345644
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=155.79 Aligned_cols=214 Identities=14% Similarity=0.046 Sum_probs=147.1
Q ss_pred ccccCCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 3 SVAAAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 3 ~~~~~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
++..+++|+++||||++ .||+++++.|+++|++|++.+|+....+.+..+.... ....++++|++|++++.++++
T Consensus 2 ~~~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~---g~~~~~~~Dv~~~~~v~~~~~ 78 (260)
T PRK06603 2 TTGLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEI---GCNFVSELDVTNPKSISNLFD 78 (260)
T ss_pred CCcccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhc---CCceEEEccCCCHHHHHHHHH
Confidence 34456789999999997 8999999999999999999888632222222222111 122357899999998877664
Q ss_pred -------CccEEEEccCCCC---------CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCC
Q 020266 81 -------GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPR 143 (328)
Q Consensus 81 -------~~d~vih~a~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~ 143 (328)
.+|++||+|+... +...+.+...+++|+.++..+++++.+.. ..+++|++||.+...+.+
T Consensus 79 ~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~--- 155 (260)
T PRK06603 79 DIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKVIP--- 155 (260)
T ss_pred HHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccCCC---
Confidence 5899999998632 11233466789999999999999876542 235899999965432110
Q ss_pred CCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC
Q 020266 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (328)
Q Consensus 144 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~ 220 (328)
....|+.||.+.+.+.+.++.+ +|++++++.||.+-.+..... ..............
T Consensus 156 -------------------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~ 215 (260)
T PRK06603 156 -------------------NYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAI-GDFSTMLKSHAATA 215 (260)
T ss_pred -------------------cccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcC-CCcHHHHHHHHhcC
Confidence 1245999999999999999886 479999999999977632110 00111222222211
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
| ...+..++|+|+++++++...
T Consensus 216 ---p--~~r~~~pedva~~~~~L~s~~ 237 (260)
T PRK06603 216 ---P--LKRNTTQEDVGGAAVYLFSEL 237 (260)
T ss_pred ---C--cCCCCCHHHHHHHHHHHhCcc
Confidence 1 123678999999999999753
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-20 Score=157.20 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=148.4
Q ss_pred cCCCCeEEEECC--ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|+++|||| ++.||+++++.|+++|++|++..|.....+.+..+.... .....+++|++|++++.++++
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAEL---DSELVFRCDVASDDEINQVFADLG 79 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhcc---CCceEEECCCCCHHHHHHHHHHHH
Confidence 466899999997 679999999999999999999877533222232322111 234578999999998887764
Q ss_pred ----CccEEEEccCCCCCC----------CCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCC
Q 020266 81 ----GCDGVCHTASPFYHD----------AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 ----~~d~vih~a~~~~~~----------~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
++|++|||||..... ..+.+...+++|+.++..+.+++.+.. +.+++|++||.+...+.+
T Consensus 80 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~~---- 155 (261)
T PRK08690 80 KHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIP---- 155 (261)
T ss_pred HHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCCC----
Confidence 589999999974321 112344567889999988888765531 235799999965433110
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
....|+.+|.+.+.+++.++.+ +|+++++|.||.+-.+....... .......+....|
T Consensus 156 ------------------~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~-~~~~~~~~~~~~p 216 (261)
T PRK08690 156 ------------------NYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIAD-FGKLLGHVAAHNP 216 (261)
T ss_pred ------------------CcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCc-hHHHHHHHhhcCC
Confidence 1245999999999999988764 48999999999998763221110 1111122222111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
...+..++|+|+++.+++.... ..|.....+
T Consensus 217 -----~~r~~~peevA~~v~~l~s~~~~~~tG~~i~vd 249 (261)
T PRK08690 217 -----LRRNVTIEEVGNTAAFLLSDLSSGITGEITYVD 249 (261)
T ss_pred -----CCCCCCHHHHHHHHHHHhCcccCCcceeEEEEc
Confidence 2347789999999999998542 255433333
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-20 Score=156.65 Aligned_cols=211 Identities=13% Similarity=0.080 Sum_probs=145.8
Q ss_pred CCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCCh--hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 7 AAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 7 ~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
+++|+++||||+ +.||++++++|++.|++|++..|+.+.. .......... ...+.++++|++|++++.++++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP--LNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc--cCcceEeecCcCCHHHHHHHHHHH
Confidence 568999999986 8999999999999999998887754322 1111111111 1246688999999998877664
Q ss_pred -----CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCC
Q 020266 81 -----GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 -----~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
.+|++|||||.... ...+.+...+++|+.++..+++++.+.. ..+++|++||.+...+.
T Consensus 82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------ 155 (258)
T PRK07370 82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRAI------ 155 (258)
T ss_pred HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccCC------
Confidence 58999999986321 1233456788999999999999877642 23689999996543210
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
| ....|+.+|.+.+.+.+.++.+. |++++++.||.+-.+..... ..............
T Consensus 156 -----------~-----~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~-~~~~~~~~~~~~~~-- 216 (258)
T PRK07370 156 -----------P-----NYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAV-GGILDMIHHVEEKA-- 216 (258)
T ss_pred -----------c-----ccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhcc-ccchhhhhhhhhcC--
Confidence 0 12459999999999999998864 79999999999987632111 00111111111111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
| ...+..++|++.++.+++...
T Consensus 217 -p--~~r~~~~~dva~~~~fl~s~~ 238 (258)
T PRK07370 217 -P--LRRTVTQTEVGNTAAFLLSDL 238 (258)
T ss_pred -C--cCcCCCHHHHHHHHHHHhChh
Confidence 1 224678899999999998753
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-20 Score=173.80 Aligned_cols=219 Identities=18% Similarity=0.153 Sum_probs=156.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
.+|+++||||+|+||+++++.|+++|++|++++|+.++.+.+.... ..++..+.+|++|++++.++++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999865554433322 2356778999999998877765
Q ss_pred CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 81 GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 81 ~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
.+|++|||||.... ...+.+...+++|+.++.++++++.+.. +.++||++||.+...+.+
T Consensus 343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 409 (520)
T PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALP------------- 409 (520)
T ss_pred CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCC-------------
Confidence 47999999986421 1223456788999999999999887752 336899999976554211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
....|+.+|...+.+++.++.+. |+++++|.||.+.++.................+..+ ...+
T Consensus 410 ---------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 475 (520)
T PRK06484 410 ---------PRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIP-----LGRL 475 (520)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCC-----CCCC
Confidence 12459999999999999998764 799999999999887432111000111222222211 1235
Q ss_pred eeHHHHHHHHHHhhcCCC--CCCc-EEEecC
Q 020266 231 VNVKDVANAHIQAFEVPS--ANGR-YCLVER 258 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~--~~g~-~~~~~~ 258 (328)
..++|+|+++++++.... ..|. +.+.++
T Consensus 476 ~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg 506 (520)
T PRK06484 476 GDPEEVAEAIAFLASPAASYVNGATLTVDGG 506 (520)
T ss_pred cCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 789999999999987532 3563 344333
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=157.99 Aligned_cols=175 Identities=21% Similarity=0.182 Sum_probs=133.2
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|+.+.+|+|+|||||..||.+++.+|+++|..++.+.|...+.+.+.+.........++..+++|++|.+++...++
T Consensus 7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~ 86 (282)
T KOG1205|consen 7 MERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI 86 (282)
T ss_pred HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH
Confidence 45667999999999999999999999999999999999888887773333333222279999999999999886653
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|++|||||.... ........++++|+.|+..+++++.+++ +.+++|.+||++...+.+
T Consensus 87 ~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P-------- 158 (282)
T KOG1205|consen 87 RHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLP-------- 158 (282)
T ss_pred HhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCC--------
Confidence 79999999997331 1222344689999999999999887652 347999999987655321
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEE----EEcCCcccCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLV----TINPAMVIGP 200 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~----ilRp~~v~G~ 200 (328)
..+.|..||.+.+.+...++.|..-..+ ++-||.|-..
T Consensus 159 --------------~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~Te 200 (282)
T KOG1205|consen 159 --------------FRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIETE 200 (282)
T ss_pred --------------cccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceeec
Confidence 1235999999999999999998633222 4677776554
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-19 Score=153.25 Aligned_cols=221 Identities=13% Similarity=0.064 Sum_probs=148.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||+|+||.++++.|+++|+.|++..|+..+ ...+...+.. ...++.++.+|++|.+++.++++
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKK--AGGEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH--cCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999988885432 2222222211 13467789999999988777664
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|++||+|+.... ...+.+...+++|+.++.++++++ .+....+++|++||.....+.+
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~-------- 153 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWP-------- 153 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCCC--------
Confidence 57999999986322 112334567889998887666554 4332246899999964332100
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+.+.++.++ |+++++++||.+.+|....... ............+
T Consensus 154 --------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~~---- 214 (261)
T PRK08936 154 --------------LFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFA-DPKQRADVESMIP---- 214 (261)
T ss_pred --------------CCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccC-CHHHHHHHHhcCC----
Confidence 12459999999999888887654 8999999999998885322111 1112222222111
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCCcEEEe
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~ 256 (328)
...+..++|+++++.+++.... ..|.....
T Consensus 215 -~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~~ 246 (261)
T PRK08936 215 -MGYIGKPEEIAAVAAWLASSEASYVTGITLFA 246 (261)
T ss_pred -CCCCcCHHHHHHHHHHHcCcccCCccCcEEEE
Confidence 2247789999999999887542 35544333
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=154.80 Aligned_cols=203 Identities=16% Similarity=0.139 Sum_probs=143.9
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC--CcCchHHhh---
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL--EEGSFDSIV--- 79 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~~~~~~~~~--- 79 (328)
..+++|+|+||||+|+||.+++++|++.|++|++++|+.++...+...+... ...++.++.+|++ +++++.+++
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA-GGPQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEecccCCCHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999876554443333221 1235677888886 444444333
Q ss_pred ----CCccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhc----CCCccEEEEecchhhhccCCCCCCC
Q 020266 80 ----DGCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAK----FPSIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 80 ----~~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
..+|+|||+|+.... ...+.+...+++|+.++.++++++.+ . +.++||++||.....+.+
T Consensus 87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~-~~~~iv~~ss~~~~~~~~----- 160 (247)
T PRK08945 87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKS-PAASLVFTSSSVGRQGRA----- 160 (247)
T ss_pred HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEEccHhhcCCCC-----
Confidence 368999999986321 12234557788999999999887753 3 567899999975444211
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
....|+.+|.+.+.+++.++.++ ++++++++|+.+-++...... ..
T Consensus 161 -----------------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~-----------~~--- 209 (247)
T PRK08945 161 -----------------NWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAF-----------PG--- 209 (247)
T ss_pred -----------------CCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhc-----------Cc---
Confidence 12349999999999999987765 689999999988765321110 00
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.....+..++|+++++.+++...
T Consensus 210 --~~~~~~~~~~~~~~~~~~~~~~~ 232 (247)
T PRK08945 210 --EDPQKLKTPEDIMPLYLYLMGDD 232 (247)
T ss_pred --ccccCCCCHHHHHHHHHHHhCcc
Confidence 01123678899999999988654
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=152.77 Aligned_cols=205 Identities=18% Similarity=0.122 Sum_probs=142.0
Q ss_pred CCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCCC---------hhh--hhhhhhccCCCCcEEEEEccCCCcC
Q 020266 7 AAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPND---------PKK--TRHLLALDGASERLQLFKANLLEEG 73 (328)
Q Consensus 7 ~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~ 73 (328)
+++|+|+|||||| .||.+++++|+++|++|++++|++.+ ... +..... ....++.++.+|+++.+
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~ 80 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIE--SYGVRCEHMEIDLSQPY 80 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHH--hcCCeEEEEECCCCCHH
Confidence 4578999999996 79999999999999999999987321 111 111111 11346889999999998
Q ss_pred chHHhhC-------CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhcc
Q 020266 74 SFDSIVD-------GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLN 138 (328)
Q Consensus 74 ~~~~~~~-------~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~ 138 (328)
++.++++ .+|+|||+||..... ..+.+...+++|+.++.++++++.+.. ..+++|++||...+.+
T Consensus 81 ~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~ 160 (256)
T PRK12748 81 APNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGP 160 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCC
Confidence 8766554 579999999864221 112344668899999999999886531 3458999999654331
Q ss_pred CCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHH
Q 020266 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLS 215 (328)
Q Consensus 139 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~ 215 (328)
.+ ....|+.+|.+.+.+++.++.+ .+++++.++||.+..+.... .....
T Consensus 161 ~~----------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~------~~~~~ 212 (256)
T PRK12748 161 MP----------------------DELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE------ELKHH 212 (256)
T ss_pred CC----------------------CchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh------hHHHh
Confidence 00 1245999999999999998776 48999999999887764221 11111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
.... .+. ..+..++|+++++.+++..
T Consensus 213 ~~~~---~~~--~~~~~~~~~a~~~~~l~~~ 238 (256)
T PRK12748 213 LVPK---FPQ--GRVGEPVDAARLIAFLVSE 238 (256)
T ss_pred hhcc---CCC--CCCcCHHHHHHHHHHHhCc
Confidence 1111 111 1245689999999988875
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=156.05 Aligned_cols=209 Identities=16% Similarity=0.092 Sum_probs=142.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Cc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 82 (328)
|+++||||+|+||.++++.|+++|++|++++|+.+............. .....++.+|+++++++.++++ ++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALG-GTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 479999999999999999999999999999997654433322222111 1234567899999888766554 47
Q ss_pred cEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|+|||+||.... ...+.+...+++|+.++.++++++.+. ...+++|++||.....+.+
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~------------- 146 (272)
T PRK07832 80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALP------------- 146 (272)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCC-------------
Confidence 999999986321 222334577899999999999987542 1236899999965433211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC----cchHHHHHHHHhCCCCCCCC
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL----NTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|.+.+.+.+..+.+ +++++++++||.+.++...... ............. .
T Consensus 147 ---------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------~ 211 (272)
T PRK07832 147 ---------WHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDR------F 211 (272)
T ss_pred ---------CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHh------c
Confidence 1234999999888888877754 5899999999999987532210 0000111111110 0
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~ 247 (328)
....+.++|+|++++.++.++
T Consensus 212 ~~~~~~~~~vA~~~~~~~~~~ 232 (272)
T PRK07832 212 RGHAVTPEKAAEKILAGVEKN 232 (272)
T ss_pred ccCCCCHHHHHHHHHHHHhcC
Confidence 123579999999999999643
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=154.08 Aligned_cols=163 Identities=20% Similarity=0.151 Sum_probs=122.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------- 80 (328)
||+++||||||+||++++++|+++|++|++++|+..+.. .. ....++.++++|+++.+++.+++.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~-----~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 73 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSL-----AA--AAGERLAEVELDLSDAAAAAAWLAGDLLAAFV 73 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhh-----hh--ccCCeEEEEEeccCCHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999999999765321 00 112468889999999988777432
Q ss_pred ---CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|++||||+.... ...+.+...+++|+.++..+++.+.+. .+.+++|++||.+...+.+
T Consensus 74 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------- 145 (243)
T PRK07023 74 DGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAYA-------- 145 (243)
T ss_pred cCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCCC--------
Confidence 47899999986432 112334577889999977777666543 1456899999975433110
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh--cCccEEEEcCCcccCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE--KSIDLVTINPAMVIGP 200 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~~~~~~ilRp~~v~G~ 200 (328)
+...|+.+|...|.+++.++.+ .++++++++||.+-++
T Consensus 146 --------------~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 146 --------------GWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred --------------CchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 2345999999999999988865 5899999999988665
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=155.35 Aligned_cols=220 Identities=15% Similarity=0.126 Sum_probs=149.4
Q ss_pred CCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 7 AAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 7 ~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
+++|+++||||+ +.||+++++.|+++|++|++.+|+....+.+........ .. ..+++|++|++++.++++
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHH
Confidence 357899999997 799999999999999999999987432222222222222 23 578899999998777664
Q ss_pred ---CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ---GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ---~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
.+|++|||||.... ...+.+...+++|+.++.++++++.+.. ..+++|++||.+...+.
T Consensus 80 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~~-------- 151 (274)
T PRK08415 80 DLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKYV-------- 151 (274)
T ss_pred HcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccCC--------
Confidence 57999999996321 1233456789999999999999887642 23589999996543211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
| ....|+.||.+.+.+.+.++.+ +|+++++|.||.+..+....... . .......... .|
T Consensus 152 ---------~-----~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~-~-~~~~~~~~~~--~p 213 (274)
T PRK08415 152 ---------P-----HYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGD-F-RMILKWNEIN--AP 213 (274)
T ss_pred ---------C-----cchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccch-h-hHHhhhhhhh--Cc
Confidence 0 1245999999999999999876 47999999999998763211100 0 0011111111 01
Q ss_pred CCCccceeHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
...+..++|+|.++++++... ...|.....+
T Consensus 214 --l~r~~~pedva~~v~fL~s~~~~~itG~~i~vd 246 (274)
T PRK08415 214 --LKKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVD 246 (274)
T ss_pred --hhccCCHHHHHHHHHHHhhhhhhcccccEEEEc
Confidence 123678999999999998743 2356443343
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-19 Score=153.47 Aligned_cols=224 Identities=16% Similarity=0.075 Sum_probs=151.8
Q ss_pred cCCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.|++|+++||||+ +.||.++++.|+++|++|++..|+....+.+..+.... .....+++|++|+++++++++
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~ 83 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL---GAFVAGHCDVTDEASIDAVFETLE 83 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc---CCceEEecCCCCHHHHHHHHHHHH
Confidence 4567999999997 89999999999999999998887633223333332221 235578999999998887664
Q ss_pred ----CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCC
Q 020266 81 ----GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ----~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
.+|++|||||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||.+...+.
T Consensus 84 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~------- 156 (272)
T PRK08159 84 KKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKVM------- 156 (272)
T ss_pred HhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccCC-------
Confidence 57999999986421 1233466788999999999999887642 23689999986432210
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
| ....|+.+|.+.+.+++.++.+. |+++++|.||.+..+....... . .......... .
T Consensus 157 ----------p-----~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~-~-~~~~~~~~~~--~ 217 (272)
T PRK08159 157 ----------P-----HYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGD-F-RYILKWNEYN--A 217 (272)
T ss_pred ----------C-----cchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCc-c-hHHHHHHHhC--C
Confidence 0 12459999999999999998864 7999999999987753211100 0 1111111111 1
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEecCcc
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~ 260 (328)
| ...+..++|+|+++++++.... ..|.....+...
T Consensus 218 p--~~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 218 P--LRRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSGY 254 (272)
T ss_pred c--ccccCCHHHHHHHHHHHhCccccCccceEEEECCCc
Confidence 1 1236789999999999987532 356444444333
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=158.18 Aligned_cols=206 Identities=17% Similarity=0.105 Sum_probs=142.0
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
..+++|+++||||+|+||++++++|+++|++|++.++... ..+.....+.. ...++.++.+|++|++.+.++++
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~--~g~~~~~~~~Dv~d~~~~~~~~~~~~ 85 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRA--AGAKAVAVAGDISQRATADELVATAV 85 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999987543 22232222221 23468899999999988777664
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC----------CccEEEEecchhhhccCCCC
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----------SIKRVVLTSSMAAVLNTGKP 142 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----------~~~~~v~~SS~~~~~~~~~~ 142 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. ..+++|++||.+...+..
T Consensus 86 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 163 (306)
T PRK07792 86 GLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPV-- 163 (306)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCC--
Confidence 58999999997432 1233455788999999999998875321 125899999976544211
Q ss_pred CCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhC
Q 020266 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG 219 (328)
Q Consensus 143 ~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~ 219 (328)
....|+.+|.+.+.+++.++.+ +|++++++.|+. ..+.... .+ ..
T Consensus 164 --------------------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~-~t~~~~~-------~~----~~ 211 (306)
T PRK07792 164 --------------------GQANYGAAKAGITALTLSAARALGRYGVRANAICPRA-RTAMTAD-------VF----GD 211 (306)
T ss_pred --------------------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC-CCchhhh-------hc----cc
Confidence 1234999999999999998875 589999999973 2211000 00 00
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
.+.........++++|++.++.+++..
T Consensus 212 ~~~~~~~~~~~~~pe~va~~v~~L~s~ 238 (306)
T PRK07792 212 APDVEAGGIDPLSPEHVVPLVQFLASP 238 (306)
T ss_pred cchhhhhccCCCCHHHHHHHHHHHcCc
Confidence 000001112346899999999888764
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-19 Score=152.07 Aligned_cols=219 Identities=15% Similarity=0.112 Sum_probs=147.1
Q ss_pred CCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 7 AAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
+++|+++||||++ .||+++++.|+++|++|++.+|+.........+... .++...+.+|++|+++++++++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ---LGSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhc---cCCceEeecCCCCHHHHHHHHHHHHh
Confidence 5689999999985 999999999999999999888863211222222111 1345678899999998887764
Q ss_pred ---CccEEEEccCCCCC----------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCC
Q 020266 81 ---GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ---~~d~vih~a~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
.+|++|||||.... ...+.+...+++|+.++..+.+++.+.. ..+++|++||.+...+.
T Consensus 81 ~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~~------- 153 (262)
T PRK07984 81 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI------- 153 (262)
T ss_pred hcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCC-------
Confidence 47999999986321 1122344667899999988888775531 22589999986532210
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
| ....|+.||.+.+.+++.++.+ +|+++.+|.||.+..+..... ..............
T Consensus 154 ----------~-----~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~-~~~~~~~~~~~~~~--- 214 (262)
T PRK07984 154 ----------P-----NYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-KDFRKMLAHCEAVT--- 214 (262)
T ss_pred ----------C-----CcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcC-CchHHHHHHHHHcC---
Confidence 0 1245999999999999999886 489999999999877531110 00111111111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEe
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLV 256 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~ 256 (328)
| ...+..++|++.++++++... ...|.....
T Consensus 215 p--~~r~~~pedva~~~~~L~s~~~~~itG~~i~v 247 (262)
T PRK07984 215 P--IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHV 247 (262)
T ss_pred C--CcCCCCHHHHHHHHHHHcCcccccccCcEEEE
Confidence 1 223678999999999998753 235544333
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-20 Score=157.84 Aligned_cols=209 Identities=16% Similarity=0.137 Sum_probs=147.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.+..+.+... ...++.++.+|+++++++.++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA-----HGDAVVGVEGDVRSLDDHKEAVARCVAAF 77 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh-----cCCceEEEEeccCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999976554433221 12468889999999887766654
Q ss_pred -CccEEEEccCCCCC------CCC----CcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 -GCDGVCHTASPFYH------DAK----DPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 -~~d~vih~a~~~~~------~~~----~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
.+|++|||||.... ... +.+...+++|+.++.++++++.+.. ..+++|++||...+++.+
T Consensus 78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~~------- 150 (262)
T TIGR03325 78 GKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNG------- 150 (262)
T ss_pred CCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCCC-------
Confidence 57999999986321 111 1355789999999999999887641 225799999865544210
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCC-cchHH-----HHHHHHhC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTL-NTSAA-----AVLSLIKG 219 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~-~~~~~-----~~~~~~~~ 219 (328)
....|+.+|.+.+.+++.++.+. .++++.+.||.+..+...... ..... ........
T Consensus 151 ---------------~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
T TIGR03325 151 ---------------GGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKS 215 (262)
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhh
Confidence 12349999999999999999875 389999999999877432110 00000 01111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
. .| ...+..++|+|+++++++..
T Consensus 216 ~--~p--~~r~~~p~eva~~~~~l~s~ 238 (262)
T TIGR03325 216 V--LP--IGRMPDAEEYTGAYVFFATR 238 (262)
T ss_pred c--CC--CCCCCChHHhhhheeeeecC
Confidence 1 11 23467899999999998875
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-19 Score=151.47 Aligned_cols=211 Identities=15% Similarity=0.060 Sum_probs=145.3
Q ss_pred cCCCCeEEEECC--ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|+++|||| ++.||.++++.|++.|++|++.+|.....+.+..+.... .....+.+|++|++++.++++
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF---GSDLVFPCDVASDEQIDALFASLG 79 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhc---CCcceeeccCCCHHHHHHHHHHHH
Confidence 456899999996 689999999999999999998876432223332222211 123468899999998887775
Q ss_pred ----CccEEEEccCCCCC----------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCC
Q 020266 81 ----GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 ----~~d~vih~a~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
.+|++|||||.... ...+.+...+++|+.++..+++++.+.. +.+++|++||.+...+.+
T Consensus 80 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~~~----- 154 (260)
T PRK06997 80 QHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERVVP----- 154 (260)
T ss_pred HHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccCCC-----
Confidence 58999999986421 1223455678999999999999887752 236899999965432100
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
....|+.+|.+.+.+.+.++.+ +|++++.|.||.+-.+.... ..........+....
T Consensus 155 -----------------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-~~~~~~~~~~~~~~~-- 214 (260)
T PRK06997 155 -----------------NYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASG-IKDFGKILDFVESNA-- 214 (260)
T ss_pred -----------------CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhcc-ccchhhHHHHHHhcC--
Confidence 1245999999999999999886 47999999999987753211 100111111111111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
| ...+..++|+++++.+++...
T Consensus 215 -p--~~r~~~pedva~~~~~l~s~~ 236 (260)
T PRK06997 215 -P--LRRNVTIEEVGNVAAFLLSDL 236 (260)
T ss_pred -c--ccccCCHHHHHHHHHHHhCcc
Confidence 1 123678999999999998753
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-19 Score=153.07 Aligned_cols=227 Identities=17% Similarity=0.133 Sum_probs=146.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------Cc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------GC 82 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~ 82 (328)
+|+++|||| |+||+++++.|. +|++|++++|+.++...+...+.. ...++.++.+|++|++++.++++ .+
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLRE--AGFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 578999998 799999999996 899999999976554443332221 12468889999999988877664 58
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCC-----
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD----- 156 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~----- 156 (328)
|+||||||.... ...+...+++|+.++.++++++.+.. ..+++|++||.+..............+.......
T Consensus 78 d~li~nAG~~~~--~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (275)
T PRK06940 78 TGLVHTAGVSPS--QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLP 155 (275)
T ss_pred CEEEECCCcCCc--hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccccccc
Confidence 999999997432 24466889999999999999887642 1246788888654432100000000011110000
Q ss_pred ---ccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc-chHHHHHHHHhCCCCCCCCCcc
Q 020266 157 ---PEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 157 ---~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
+.........|+.||.+.+.+++.++.+. |+++++|.||.+.++....... .......++.... | ...
T Consensus 156 ~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~---p--~~r 230 (275)
T PRK06940 156 FLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKS---P--AGR 230 (275)
T ss_pred cccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhC---C--ccc
Confidence 00000123569999999999999887764 7999999999998874221110 0011122222211 1 123
Q ss_pred ceeHHHHHHHHHHhhcC
Q 020266 230 WVNVKDVANAHIQAFEV 246 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~ 246 (328)
+..++|+|+++++++..
T Consensus 231 ~~~peeia~~~~fL~s~ 247 (275)
T PRK06940 231 PGTPDEIAALAEFLMGP 247 (275)
T ss_pred CCCHHHHHHHHHHHcCc
Confidence 77999999999998864
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-19 Score=150.40 Aligned_cols=205 Identities=15% Similarity=0.130 Sum_probs=141.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecC-CCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
|++|||||+|+||+++++.|+++|++|+++.|+ ......+...... ...++.++.+|++|++++.++++ .
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGA--LGFDFRVVEGDVSSFESCKAAVAKVEAELGP 78 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--hCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999883 2222221111111 12468899999999988776654 5
Q ss_pred ccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 82 ~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
+|+|||+||.... ...+.+...+++|+.++..+++.+. +. +.+++|++||.....+..
T Consensus 79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~~~~~~~~------------ 145 (242)
T TIGR01829 79 IDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINISSVNGQKGQF------------ 145 (242)
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhcCCCC------------
Confidence 8999999986422 1222345667899999888766554 33 557899999965443211
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.+|...+.+++.++.+ .+++++.++|+.+.++..... ............+ ...
T Consensus 146 ----------~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~---~~~~~~~~~~~~~-----~~~ 207 (242)
T TIGR01829 146 ----------GQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAM---REDVLNSIVAQIP-----VGR 207 (242)
T ss_pred ----------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCcccccc---chHHHHHHHhcCC-----CCC
Confidence 1234999999999988888765 389999999999998754321 1122333332221 123
Q ss_pred ceeHHHHHHHHHHhhcCC
Q 020266 230 WVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~ 247 (328)
+..++|+++++.+++.++
T Consensus 208 ~~~~~~~a~~~~~l~~~~ 225 (242)
T TIGR01829 208 LGRPEEIAAAVAFLASEE 225 (242)
T ss_pred CcCHHHHHHHHHHHcCch
Confidence 567899999998887653
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=153.07 Aligned_cols=202 Identities=16% Similarity=0.194 Sum_probs=144.3
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Ccc
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GCD 83 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 83 (328)
|+||||+|+||.++++.|+++|++|+++.|+.++ ...+...... ...++.++++|++|++++.++++ .+|
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~ 78 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQA--QGGNARLLQFDVADRVACRTLLEADIAEHGAYY 78 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH--cCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 6899999999999999999999999999876432 2222222211 13468899999999988777654 469
Q ss_pred EEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh-----cCCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 84 GVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA-----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 84 ~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~-----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
++||+||.... ...+.+...+++|+.++.++++++. +. +.+++|++||.+..++.+
T Consensus 79 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~vsS~~~~~~~~------------- 144 (239)
T TIGR01831 79 GVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRAR-QGGRIITLASVSGVMGNR------------- 144 (239)
T ss_pred EEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc-CCeEEEEEcchhhccCCC-------------
Confidence 99999986332 2233455788999999999988763 22 446899999977666321
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
....|+.+|.+.+.+.+.++.+ .|++++.++||.+.++..... ........... | ...+
T Consensus 145 ---------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~---~--~~~~ 206 (239)
T TIGR01831 145 ---------GQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEV----EHDLDEALKTV---P--MNRM 206 (239)
T ss_pred ---------CCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhh----hHHHHHHHhcC---C--CCCC
Confidence 1234999999999999888776 389999999999988754321 12222222211 1 1235
Q ss_pred eeHHHHHHHHHHhhcCC
Q 020266 231 VNVKDVANAHIQAFEVP 247 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~ 247 (328)
...+|+++++.+++..+
T Consensus 207 ~~~~~va~~~~~l~~~~ 223 (239)
T TIGR01831 207 GQPAEVASLAGFLMSDG 223 (239)
T ss_pred CCHHHHHHHHHHHcCch
Confidence 68899999999998854
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-19 Score=151.92 Aligned_cols=214 Identities=14% Similarity=0.033 Sum_probs=143.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Cc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 82 (328)
|+++||||+|.||++++++|+++|++|++++|+++........+.. ..++.++++|++|++++.++++ ++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKE---YGEVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 4799999999999999999999999999999987654443332221 1357889999999998877664 58
Q ss_pred cEEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 83 DGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 83 d~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
|+|||+||.... ...+.+...+.+|+.++..+...+ .+..+.++||++||.+...+.+
T Consensus 78 d~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~----------- 146 (259)
T PRK08340 78 DALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMP----------- 146 (259)
T ss_pred CEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCC-----------
Confidence 999999986321 111223345667877766555443 2211446899999975432100
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc--------chHH-HHHHHHhC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN--------TSAA-AVLSLIKG 219 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--------~~~~-~~~~~~~~ 219 (328)
....|+.+|.+.+.+++.++.++ |+++..+.||.+-.|....... .... +......
T Consensus 147 -----------~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 214 (259)
T PRK08340 147 -----------PLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLE- 214 (259)
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhc-
Confidence 12459999999999999998875 7999999999987764211000 0000 1111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcE
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRY 253 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~ 253 (328)
. .| ...+..++|+|+++.+++... ...|..
T Consensus 215 ~--~p--~~r~~~p~dva~~~~fL~s~~~~~itG~~ 246 (259)
T PRK08340 215 R--TP--LKRTGRWEELGSLIAFLLSENAEYMLGST 246 (259)
T ss_pred c--CC--ccCCCCHHHHHHHHHHHcCcccccccCce
Confidence 1 12 233678999999999998753 235543
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=148.74 Aligned_cols=219 Identities=16% Similarity=0.052 Sum_probs=146.7
Q ss_pred ccCCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCC--------Chhhhhhhhh-ccCCCCcEEEEEccCCCcC
Q 020266 5 AAAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPN--------DPKKTRHLLA-LDGASERLQLFKANLLEEG 73 (328)
Q Consensus 5 ~~~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~--------~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~ 73 (328)
..+++|+|+||||+| .||++++++|+++|++|++..|+.. ....+..... ......++.++++|+++++
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~ 81 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQND 81 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 356689999999995 8999999999999999988764311 1111111111 1112346888999999999
Q ss_pred chHHhhC-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhcc
Q 020266 74 SFDSIVD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLN 138 (328)
Q Consensus 74 ~~~~~~~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~ 138 (328)
++.++++ .+|+|||+||.... ...+.+...+++|+.+...+.+++.+.. +.++||++||.....+
T Consensus 82 ~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 161 (256)
T PRK12859 82 APKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQGP 161 (256)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCCC
Confidence 8877764 47999999986322 2223455678899999988876554321 3458999999654321
Q ss_pred CCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHH
Q 020266 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLS 215 (328)
Q Consensus 139 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~ 215 (328)
.+ ....|+.+|.+.+.+++.++.+ ++++++.++||.+-++.... .+..
T Consensus 162 ~~----------------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~-------~~~~ 212 (256)
T PRK12859 162 MV----------------------GELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE-------EIKQ 212 (256)
T ss_pred CC----------------------CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH-------HHHH
Confidence 00 1245999999999999998876 48999999999887763221 1111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEe
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLV 256 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~ 256 (328)
..... .+ ...+..++|+++++.+++... ...|.+...
T Consensus 213 ~~~~~--~~--~~~~~~~~d~a~~~~~l~s~~~~~~~G~~i~~ 251 (256)
T PRK12859 213 GLLPM--FP--FGRIGEPKDAARLIKFLASEEAEWITGQIIHS 251 (256)
T ss_pred HHHhc--CC--CCCCcCHHHHHHHHHHHhCccccCccCcEEEe
Confidence 11111 12 123568999999999988653 235544433
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-19 Score=151.96 Aligned_cols=219 Identities=14% Similarity=0.075 Sum_probs=149.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Ccc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCD 83 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d 83 (328)
+++|+++||||+|.||+++++.|++.|++|++++|+.++...+...+... ...++.++.+|++|++++.++++ .+|
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA-HGVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh-cCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 45799999999999999999999999999999999876554433322211 12467889999999998877665 589
Q ss_pred EEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020266 84 GVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 84 ~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
++|||||.... ...+.+...+++|+.+..++++++.+.. +.+++|++||.....+.
T Consensus 84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~---------------- 147 (259)
T PRK06125 84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPD---------------- 147 (259)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCC----------------
Confidence 99999986322 2233455778899999999988765331 33589999996432210
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCc-------chHHHHHHHHhCCCCCCC
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN-------TSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 225 (328)
+ ....|+.+|.+.+.+++.++.+ .|++++.+.||.+.++....... ............. +
T Consensus 148 -~-----~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 217 (259)
T PRK06125 148 -A-----DYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGL---P- 217 (259)
T ss_pred -C-----CchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccC---C-
Confidence 0 1244899999999999998764 48999999999988763110000 0001111111111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCC--CCCCcE
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP--SANGRY 253 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~--~~~g~~ 253 (328)
...+..++|+|+++++++... ...|..
T Consensus 218 -~~~~~~~~~va~~~~~l~~~~~~~~~G~~ 246 (259)
T PRK06125 218 -LGRPATPEEVADLVAFLASPRSGYTSGTV 246 (259)
T ss_pred -cCCCcCHHHHHHHHHHHcCchhccccCce
Confidence 123678999999999998743 235543
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=172.15 Aligned_cols=214 Identities=20% Similarity=0.141 Sum_probs=150.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++++++||||+|+||+++++.|+++|++|++++|+.++.+.+...+... ..++.++.+|++|++.+.++++
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA--GAVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999999999876555444333222 2468899999999998877765
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|+||||||.... ...+.+...+++|+.|+.++++++... +..++||++||.+++.+.+
T Consensus 390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~--------- 460 (582)
T PRK05855 390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSR--------- 460 (582)
T ss_pred cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCC---------
Confidence 47999999997432 123345577889999999998876543 1235899999976544211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC-cc-hH---HHHHHHHhCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-NT-SA---AAVLSLIKGAQ 221 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~-~~---~~~~~~~~~~~ 221 (328)
....|+.||.+.+.+++.++.+ +|++++++.||.|-.+...... .. .. .........
T Consensus 461 -------------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-- 525 (582)
T PRK05855 461 -------------SLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAEDEARRRGRADK-- 525 (582)
T ss_pred -------------CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccchhhhHHhhhhh--
Confidence 1245999999999999988775 4899999999999776422110 00 00 000000000
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
.. ......++|+|++++.++.++.
T Consensus 526 ~~---~~~~~~p~~va~~~~~~~~~~~ 549 (582)
T PRK05855 526 LY---QRRGYGPEKVAKAIVDAVKRNK 549 (582)
T ss_pred hc---cccCCCHHHHHHHHHHHHHcCC
Confidence 00 0113478999999999998753
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-19 Score=150.63 Aligned_cols=204 Identities=20% Similarity=0.231 Sum_probs=144.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++++|+||||+|+||+++++.|++.|++|++++|++++...+...... ..++.++++|+++++.+.++++
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK---YGNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999986554433222211 2368889999999988776654
Q ss_pred -CccEEEEccCCCCCCC---CCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020266 81 -GCDGVCHTASPFYHDA---KDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 81 -~~d~vih~a~~~~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
.+|.+||+++...... .+.....+++|+.+..++++.+.+.. ..+++|++||....++.. +
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~-------------~- 145 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKAS-------------P- 145 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccCC-------------C-
Confidence 4699999998633211 12234567889999888888776641 235799999965433110 0
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcccee
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (328)
....|+.+|.+.+.+++.++.+. +++++++||+.++++..... .+.. .+ .....++.
T Consensus 146 -------~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~------~~~~----~~---~~~~~~~~ 205 (238)
T PRK05786 146 -------DQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPER------NWKK----LR---KLGDDMAP 205 (238)
T ss_pred -------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchh------hhhh----hc---cccCCCCC
Confidence 12349999999999988888764 89999999999999743210 0010 10 11123678
Q ss_pred HHHHHHHHHHhhcCC
Q 020266 233 VKDVANAHIQAFEVP 247 (328)
Q Consensus 233 v~D~a~~~~~~~~~~ 247 (328)
.+|+++++..++..+
T Consensus 206 ~~~va~~~~~~~~~~ 220 (238)
T PRK05786 206 PEDFAKVIIWLLTDE 220 (238)
T ss_pred HHHHHHHHHHHhccc
Confidence 899999999998753
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-19 Score=156.08 Aligned_cols=200 Identities=16% Similarity=0.155 Sum_probs=141.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCc--CchH---HhhC--
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE--GSFD---SIVD-- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~---~~~~-- 80 (328)
.+++++||||||+||++++++|+++|++|++++|++++.+.+...+.......++..+.+|+++. +.+. +.+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999998776655444332222224677888999852 2222 2333
Q ss_pred CccEEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 ~~d~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++|||||.... ...+.+...+++|+.|+.++++++.+. .+.+++|++||.++...++
T Consensus 132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~---------- 201 (320)
T PLN02780 132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPS---------- 201 (320)
T ss_pred CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCC----------
Confidence 35699999986421 112234467899999999999887642 1457899999976543110
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
.| ..+.|+.||.+.+.+.+.++.+. |++++++.||.+-.+.... ....
T Consensus 202 -----~p-----~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~-------------~~~~------ 252 (320)
T PLN02780 202 -----DP-----LYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASI-------------RRSS------ 252 (320)
T ss_pred -----Cc-----cchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCcccc-------------cCCC------
Confidence 00 12459999999999999998864 8999999999987763210 0000
Q ss_pred ccceeHHHHHHHHHHhhcC
Q 020266 228 FGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~ 246 (328)
.-...++++|+.++..+..
T Consensus 253 ~~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 253 FLVPSSDGYARAALRWVGY 271 (320)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 1135789999999999964
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=150.23 Aligned_cols=206 Identities=17% Similarity=0.162 Sum_probs=138.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecC-CCChhhhhhhhhccCCCCcEEEEEccCCCcCch----HHhh-----
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKANLLEEGSF----DSIV----- 79 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~----~~~~----- 79 (328)
++++||||+|+||+++++.|+++|++|+++.|+ .+....+...+... ...++.++.+|++|++.+ .+++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~ 80 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNAR-RPNSAVTCQADLSNSATLFSRCEAIIDACFR 80 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhc-cCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence 579999999999999999999999999998764 33333332222211 123566789999998754 3332
Q ss_pred --CCccEEEEccCCCCCC-----CCC-----------cchhhhhHHHHHHHHHHHHHhcCC---------CccEEEEecc
Q 020266 80 --DGCDGVCHTASPFYHD-----AKD-----------PQVELLDPAVKGTLNVLNSCAKFP---------SIKRVVLTSS 132 (328)
Q Consensus 80 --~~~d~vih~a~~~~~~-----~~~-----------~~~~~~~~N~~~~~~l~~~~~~~~---------~~~~~v~~SS 132 (328)
.++|+||||||..... ... .+...+++|+.++..+++++.+.. ...++|.+||
T Consensus 81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s 160 (267)
T TIGR02685 81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCD 160 (267)
T ss_pred ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehh
Confidence 2689999999863211 111 244678999999999988765431 1236788887
Q ss_pred hhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcch
Q 020266 133 MAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTS 209 (328)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~ 209 (328)
.....+. .....|+.||.+.+.+++.++.+ +|+++++|+||.+..|....
T Consensus 161 ~~~~~~~----------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~----- 213 (267)
T TIGR02685 161 AMTDQPL----------------------LGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP----- 213 (267)
T ss_pred hhccCCC----------------------cccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc-----
Confidence 5322100 02345999999999999999887 58999999999987663211
Q ss_pred HHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 210 AAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...........+ .. ..+..++|++++++.++.+.
T Consensus 214 ~~~~~~~~~~~~---~~-~~~~~~~~va~~~~~l~~~~ 247 (267)
T TIGR02685 214 FEVQEDYRRKVP---LG-QREASAEQIADVVIFLVSPK 247 (267)
T ss_pred hhHHHHHHHhCC---CC-cCCCCHHHHHHHHHHHhCcc
Confidence 111111111111 11 13568999999999998754
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=147.55 Aligned_cols=217 Identities=16% Similarity=0.100 Sum_probs=146.4
Q ss_pred CCCCeEEEECC--ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 7 AAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 7 ~~~~~vlVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
+++|+++|||| ++.||.++++.|+++|++|++.+|+... +.+....... ..++.++++|++|++++.++++
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~-~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRAL-RLTERIAKRL--PEPAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccch-hHHHHHHHhc--CCCCcEEeCCCCCHHHHHHHHHHHHH
Confidence 56899999999 8999999999999999999999886421 1111111111 1256789999999988777654
Q ss_pred ---CccEEEEccCCCCC------C---CCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ---GCDGVCHTASPFYH------D---AKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ---~~d~vih~a~~~~~------~---~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|++|||||.... . ..+.+.+.+++|+.++..+++++.+.. ..+++|++|+.+...
T Consensus 82 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~~---------- 151 (256)
T PRK07889 82 HVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATVA---------- 151 (256)
T ss_pred HcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeeccccc----------
Confidence 58999999987421 1 122344568999999999998877642 225788888642111
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
.| ....|+.||.+.+.+++.++.+ +|+++++|.||.+-.+..... ..............|
T Consensus 152 --------~~-----~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~p--- 214 (256)
T PRK07889 152 --------WP-----AYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAI-PGFELLEEGWDERAP--- 214 (256)
T ss_pred --------CC-----ccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcc-cCcHHHHHHHHhcCc---
Confidence 00 1245999999999999998886 489999999999987642211 001111111111111
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCCcEE
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~ 254 (328)
- .+.+..++|+|+++++++.... ..|.+.
T Consensus 215 ~-~~~~~~p~evA~~v~~l~s~~~~~~tG~~i 245 (256)
T PRK07889 215 L-GWDVKDPTPVARAVVALLSDWFPATTGEIV 245 (256)
T ss_pred c-ccccCCHHHHHHHHHHHhCcccccccceEE
Confidence 0 1136789999999999987542 356443
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-19 Score=170.40 Aligned_cols=201 Identities=19% Similarity=0.172 Sum_probs=149.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+++....+...... ...++.++.+|++|++++.++++
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRA--KGGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999999987654443333222 13468899999999998887765
Q ss_pred --CccEEEEccCCCCCC----C---CCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 --GCDGVCHTASPFYHD----A---KDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 --~~d~vih~a~~~~~~----~---~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||..... . .+.+...+++|+.++.++++++.+. .+.+++|++||.+++.+.+
T Consensus 446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 517 (657)
T PRK07201 446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAP-------- 517 (657)
T ss_pred cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC--------
Confidence 589999999963211 1 1234577899999999988776542 1457899999976543211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
..+.|+.+|.+.+.+++.++.+. ++++++++||.+.++...+.. . ++
T Consensus 518 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~------------~---~~- 567 (657)
T PRK07201 518 --------------RFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTK------------R---YN- 567 (657)
T ss_pred --------------CcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCccc------------c---cc-
Confidence 12459999999999999988764 899999999999887533210 0 00
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
....+.++++|+.++.++.+.
T Consensus 568 -~~~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 568 -NVPTISPEEAADMVVRAIVEK 588 (657)
T ss_pred -CCCCCCHHHHHHHHHHHHHhC
Confidence 112578999999999987653
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=145.08 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=139.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----Ccc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GCD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d 83 (328)
|++++||||+|+||+++++.|+++|++|++++|+.++...+.. .+++++.+|+++.+.+.++++ .+|
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA--------LGAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh--------ccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 5789999999999999999999999999999998654433221 245689999999988877542 489
Q ss_pred EEEEccCCCCCC-------CCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 84 GVCHTASPFYHD-------AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 84 ~vih~a~~~~~~-------~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
+|||+++..... ..+.+...+++|+.++.++++++.+.. ..+++|++||....++....
T Consensus 73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------------ 140 (222)
T PRK06953 73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATG------------ 140 (222)
T ss_pred EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccC------------
Confidence 999999875211 223355789999999999999987631 23579999997655531100
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhc-CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeH
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 233 (328)
. ....|+.+|...+.+++.++.++ +++++.++||.+..+.... ...+..
T Consensus 141 -~------~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~~-----------------------~~~~~~ 190 (222)
T PRK06953 141 -T------TGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGGA-----------------------QAALDP 190 (222)
T ss_pred -C------CccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCCC-----------------------CCCCCH
Confidence 0 01249999999999999988765 7899999999988874210 013567
Q ss_pred HHHHHHHHHhhcC
Q 020266 234 KDVANAHIQAFEV 246 (328)
Q Consensus 234 ~D~a~~~~~~~~~ 246 (328)
++.++.+..++..
T Consensus 191 ~~~~~~~~~~~~~ 203 (222)
T PRK06953 191 AQSVAGMRRVIAQ 203 (222)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888777654
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=153.58 Aligned_cols=218 Identities=26% Similarity=0.334 Sum_probs=148.1
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEccCC
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTASP 91 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a~~ 91 (328)
|+|+||||.+|+++++.|++.+++|+++.|+.++... .. +. ..+++.+.+|+.|++++.++++++|.||.+.+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~-~~-l~----~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRA-QQ-LQ----ALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHH-HH-HH----HTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhh-hh-hh----cccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 7999999999999999999999999999998743211 11 11 135788899999999999999999999988775
Q ss_pred CCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhh
Q 020266 92 FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK 171 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK 171 (328)
.. ..-.....+++++|++. ++++||+ ||....+. +.....| ....-..|
T Consensus 75 ~~-----------~~~~~~~~~li~Aa~~a-gVk~~v~-ss~~~~~~------------~~~~~~p------~~~~~~~k 123 (233)
T PF05368_consen 75 SH-----------PSELEQQKNLIDAAKAA-GVKHFVP-SSFGADYD------------ESSGSEP------EIPHFDQK 123 (233)
T ss_dssp SC-----------CCHHHHHHHHHHHHHHH-T-SEEEE-SEESSGTT------------TTTTSTT------HHHHHHHH
T ss_pred ch-----------hhhhhhhhhHHHhhhcc-ccceEEE-EEeccccc------------ccccccc------cchhhhhh
Confidence 33 12345568899999998 7999986 55332220 1100111 12244578
Q ss_pred HHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC---CCC--CCCCccce-eHHHHHHHHHHhhc
Q 020266 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA---QTY--PNVTFGWV-NVKDVANAHIQAFE 245 (328)
Q Consensus 172 ~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~v-~v~D~a~~~~~~~~ 245 (328)
...|+.+++ .+++++++||+..+....... .......... ... ++....++ +.+|+++++..++.
T Consensus 124 ~~ie~~l~~----~~i~~t~i~~g~f~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~ 194 (233)
T PF05368_consen 124 AEIEEYLRE----SGIPYTIIRPGFFMENLLPPF-----APVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILL 194 (233)
T ss_dssp HHHHHHHHH----CTSEBEEEEE-EEHHHHHTTT-----HHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHH
T ss_pred hhhhhhhhh----ccccceeccccchhhhhhhhh-----cccccccccceEEEEccCCCccccccccHHHHHHHHHHHHc
Confidence 888877755 489999999998765321110 0000011111 111 24445665 99999999999999
Q ss_pred CCCCC--C-cEEEecCccCHHHHHHHHHHhCCC
Q 020266 246 VPSAN--G-RYCLVERVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 246 ~~~~~--g-~~~~~~~~~~~~el~~~i~~~~~~ 275 (328)
++... + .+.++++.+|..|+++.+.+.+|+
T Consensus 195 ~p~~~~~~~~~~~~~~~~t~~eia~~~s~~~G~ 227 (233)
T PF05368_consen 195 DPEKHNNGKTIFLAGETLTYNEIAAILSKVLGK 227 (233)
T ss_dssp SGGGTTEEEEEEEGGGEEEHHHHHHHHHHHHTS
T ss_pred ChHHhcCCEEEEeCCCCCCHHHHHHHHHHHHCC
Confidence 87665 3 556667899999999999999885
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=144.01 Aligned_cols=186 Identities=19% Similarity=0.162 Sum_probs=137.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---CccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~vi 86 (328)
|+++||||+|+||++++++|.++ ++|++++|+.. .+++|++|+++++++++ ++|+||
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~~~id~lv 60 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-------------------DVQVDITDPASIRALFEKVGKVDAVV 60 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-------------------ceEecCCChHHHHHHHHhcCCCCEEE
Confidence 47999999999999999999999 99999998742 25789999998888776 689999
Q ss_pred EccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC-CCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020266 87 HTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (328)
Q Consensus 87 h~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 160 (328)
|+||.... ...+.+...+++|+.++.++++++.+. .+..++|++||..+..+.+
T Consensus 61 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~~-------------------- 120 (199)
T PRK07578 61 SAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPIP-------------------- 120 (199)
T ss_pred ECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCCC--------------------
Confidence 99986321 122345577889999999999988763 1335799999865433110
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHh--cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHH
Q 020266 161 KQSELWYPLSKTLAEDAAWKFAKE--KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238 (328)
Q Consensus 161 ~~~~~~Y~~sK~~~E~~~~~~~~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 238 (328)
....|+.+|.+.+.+++.++.+ .|++++.+.||.+-.+... ..+ .++ ...++.++|+|+
T Consensus 121 --~~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~~---------~~~------~~~--~~~~~~~~~~a~ 181 (199)
T PRK07578 121 --GGASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESLEK---------YGP------FFP--GFEPVPAARVAL 181 (199)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchhh---------hhh------cCC--CCCCCCHHHHHH
Confidence 1245999999999999998886 4899999999987544210 000 011 123689999999
Q ss_pred HHHHhhcCCCCCCcEE
Q 020266 239 AHIQAFEVPSANGRYC 254 (328)
Q Consensus 239 ~~~~~~~~~~~~g~~~ 254 (328)
++..++.....+..++
T Consensus 182 ~~~~~~~~~~~g~~~~ 197 (199)
T PRK07578 182 AYVRSVEGAQTGEVYK 197 (199)
T ss_pred HHHHHhccceeeEEec
Confidence 9999998643222444
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=152.23 Aligned_cols=238 Identities=18% Similarity=0.186 Sum_probs=148.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
++|+++||||++.||.++++.|+++| ++|++++|+.++...+...+.. ...++.++.+|++++++++++++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 79 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGM--PKDSYTIMHLDLGSLDSVRQFVQQFRESG 79 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 36799999999999999999999999 9999999987655443333221 13467889999999988776653
Q ss_pred -CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC----C-CccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF----P-SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 -~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~----~-~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|++|||||.... ...+.+...+++|+.++..+++++.+. . +.++||++||.+............ +
T Consensus 80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~-~ 158 (314)
T TIGR01289 80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPP-K 158 (314)
T ss_pred CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCC-c
Confidence 58999999996321 122345577899999998887766542 1 136999999976543210000000 0
Q ss_pred ccCCC-------CCC-----ccccccCCchhhhhhHHHHHHHHHHHHh----cCccEEEEcCCccc-CCCCCCCCcchHH
Q 020266 149 VDETW-------FSD-----PEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVI-GPLLQPTLNTSAA 211 (328)
Q Consensus 149 ~~E~~-------~~~-----~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~~v~-G~~~~~~~~~~~~ 211 (328)
.+.++ +.. ...+..+...|+.||++...+.+.++++ .++.++.++||.|. .+...........
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~ 238 (314)
T TIGR01289 159 ANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRT 238 (314)
T ss_pred ccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHH
Confidence 00000 000 0000112346999999988888888765 37999999999985 3322111111101
Q ss_pred HHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEE
Q 020266 212 AVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (328)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~ 254 (328)
.+....... ...+.++++.++.++.++..+. .+|.|.
T Consensus 239 ~~~~~~~~~------~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~ 277 (314)
T TIGR01289 239 LFPPFQKYI------TKGYVSEEEAGERLAQVVSDPKLKKSGVYW 277 (314)
T ss_pred HHHHHHHHH------hccccchhhhhhhhHHhhcCcccCCCceee
Confidence 111111100 1125789999999998877543 245554
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=149.70 Aligned_cols=209 Identities=15% Similarity=0.093 Sum_probs=142.6
Q ss_pred eEEEECCccHHHHHHHHHHHH----CCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC-----
Q 020266 11 VVCVTGASGYIASWLVKLLLS----RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG----- 81 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 81 (328)
.++||||+|+||.+++++|++ .|++|++++|+.+..+.+...+.......++.++.+|+++++++.++++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP 81 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence 589999999999999999997 79999999998766555443332211234688899999999887776641
Q ss_pred ------ccEEEEccCCCCCC--------CCCcchhhhhHHHHHHHHHHHHHhcCC-----CccEEEEecchhhhccCCCC
Q 020266 82 ------CDGVCHTASPFYHD--------AKDPQVELLDPAVKGTLNVLNSCAKFP-----SIKRVVLTSSMAAVLNTGKP 142 (328)
Q Consensus 82 ------~d~vih~a~~~~~~--------~~~~~~~~~~~N~~~~~~l~~~~~~~~-----~~~~~v~~SS~~~~~~~~~~ 142 (328)
.|+||||||..... ..+.+...+++|+.++..+++++.+.. ..+++|++||.+...+.+
T Consensus 82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~~-- 159 (256)
T TIGR01500 82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFK-- 159 (256)
T ss_pred ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCCC--
Confidence 26999999863211 113445789999999988887765531 135899999976543110
Q ss_pred CCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCc--chHHHHHHHH
Q 020266 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN--TSAAAVLSLI 217 (328)
Q Consensus 143 ~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~ 217 (328)
....|+.||.+.+.+++.++.+ .|++++++.||.+-.+....... .-... ....
T Consensus 160 --------------------~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~ 218 (256)
T TIGR01500 160 --------------------GWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDM-RKGL 218 (256)
T ss_pred --------------------CchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhH-HHHH
Confidence 1245999999999999998876 47999999999987653110000 00001 1111
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
.... + ...+..++|+|++++.++.+
T Consensus 219 ~~~~--~--~~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 219 QELK--A--KGKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred HHHH--h--cCCCCCHHHHHHHHHHHHhc
Confidence 1100 1 11367999999999999863
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=151.00 Aligned_cols=218 Identities=18% Similarity=0.134 Sum_probs=143.9
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC----------ChhhhhhhhhccCCCCcEEEEEccCCCcCc
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN----------DPKKTRHLLALDGASERLQLFKANLLEEGS 74 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 74 (328)
..+++|+++||||++.||.++++.|++.|++|++++|+.. ....+...+.. ...++.++++|++|+++
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dv~~~~~ 81 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTA--AGGRGIAVQVDHLVPEQ 81 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHh--cCCceEEEEcCCCCHHH
Confidence 4466899999999999999999999999999999999743 12222222221 12357789999999998
Q ss_pred hHHhhC-------CccEEEEcc-CCC------CC---CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchh
Q 020266 75 FDSIVD-------GCDGVCHTA-SPF------YH---DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMA 134 (328)
Q Consensus 75 ~~~~~~-------~~d~vih~a-~~~------~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~ 134 (328)
++++++ ++|++|||| +.. .. ...+.+.+.+++|+.++..+++++.+.. +.++||++||..
T Consensus 82 v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~ 161 (305)
T PRK08303 82 VRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGT 161 (305)
T ss_pred HHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcc
Confidence 877664 579999999 631 11 1123344678899999999888776542 236899999954
Q ss_pred hhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHH
Q 020266 135 AVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAA 211 (328)
Q Consensus 135 ~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~ 211 (328)
..++... .+ ....|+.+|.+...+++.++.+. |+++.+|.||.+-.+...........
T Consensus 162 ~~~~~~~--------------~~-----~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~ 222 (305)
T PRK08303 162 AEYNATH--------------YR-----LSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEE 222 (305)
T ss_pred ccccCcC--------------CC-----CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCcc
Confidence 3321100 00 12349999999999999988864 79999999998866531100000000
Q ss_pred HHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 212 AVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
......... |. ..-+..++|+|.++++++..+
T Consensus 223 ~~~~~~~~~---p~-~~~~~~peevA~~v~fL~s~~ 254 (305)
T PRK08303 223 NWRDALAKE---PH-FAISETPRYVGRAVAALAADP 254 (305)
T ss_pred chhhhhccc---cc-cccCCCHHHHHHHHHHHHcCc
Confidence 000111101 11 122457999999999998765
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=146.93 Aligned_cols=167 Identities=18% Similarity=0.200 Sum_probs=124.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----Ccc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GCD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d 83 (328)
||+|+||||+|+||+++++.|+++|++|++++|++.+...+... .++.++.+|++|++++.++++ ++|
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQAL-------PGVHIEKLDMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhc-------cccceEEcCCCCHHHHHHHHHHhhcCCCC
Confidence 47899999999999999999999999999999987665433221 356778899999988777665 589
Q ss_pred EEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 84 GVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 84 ~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
+|||+||.... ...+.+...+++|+.++..+++++.+.. +..+++++||.....+.. +
T Consensus 74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~-------------~ 140 (225)
T PRK08177 74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELP-------------D 140 (225)
T ss_pred EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccC-------------C
Confidence 99999987422 1123344677889999999999886542 235788888843221100 0
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCC
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPL 201 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~ 201 (328)
.. ....|+.+|.+.+.+++.++.+ .+++++.++||.+-.+.
T Consensus 141 ~~------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~ 184 (225)
T PRK08177 141 GG------EMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184 (225)
T ss_pred CC------CccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence 00 1234999999999999998876 36899999999987764
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-18 Score=144.58 Aligned_cols=187 Identities=17% Similarity=0.121 Sum_probs=129.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.+++|+++||||+|+||++++++|+++|++|++++|+..+... ... . .....+.+|++|.+++.+.+.++|++
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~--~~~---~--~~~~~~~~D~~~~~~~~~~~~~iDil 83 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSE--SND---E--SPNEWIKWECGKEESLDKQLASLDVL 83 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhh--hhc---c--CCCeEEEeeCCCHHHHHHhcCCCCEE
Confidence 3457899999999999999999999999999999997622111 110 1 11256789999999999888899999
Q ss_pred EEccCCCC--CCCCCcchhhhhHHHHHHHHHHHHHhcCC------CccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020266 86 CHTASPFY--HDAKDPQVELLDPAVKGTLNVLNSCAKFP------SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (328)
Q Consensus 86 ih~a~~~~--~~~~~~~~~~~~~N~~~~~~l~~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 157 (328)
|||||... ....+.+...+++|+.++.++++++.+.. +...++..||.+...+ +
T Consensus 84 VnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~-~----------------- 145 (245)
T PRK12367 84 ILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQP-A----------------- 145 (245)
T ss_pred EECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCC-C-----------------
Confidence 99998632 22234556889999999999999876531 1223444455332210 0
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHH-------hcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 158 EVCKQSELWYPLSKTLAEDAAWKFAK-------EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~E~~~~~~~~-------~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
....|+.||.+.+.+. .++. ..++.++.+.||.+..+.. + ...
T Consensus 146 -----~~~~Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~------------------~------~~~ 195 (245)
T PRK12367 146 -----LSPSYEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPFRSELN------------------P------IGI 195 (245)
T ss_pred -----CCchhHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCcccccC------------------c------cCC
Confidence 1134999999875543 3322 3478888888876543310 0 114
Q ss_pred eeHHHHHHHHHHhhcCC
Q 020266 231 VNVKDVANAHIQAFEVP 247 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~ 247 (328)
+.++|+|+.++.++.+.
T Consensus 196 ~~~~~vA~~i~~~~~~~ 212 (245)
T PRK12367 196 MSADFVAKQILDQANLG 212 (245)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 68999999999999765
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-18 Score=160.62 Aligned_cols=209 Identities=16% Similarity=0.123 Sum_probs=148.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
.++|+++||||+++||.++++.|+++|++|++++|+.+....+.... ..++.++.+|+++++++.++++
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL-----GPDHHALAMDVSDEAQIREGFEQLHREF 77 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEeccCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999876554433322 2356789999999998877664
Q ss_pred -CccEEEEccCCCC-------CCCCCcchhhhhHHHHHHHHHHHHHhcCC---Cc-cEEEEecchhhhccCCCCCCCCcc
Q 020266 81 -GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SI-KRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 -~~d~vih~a~~~~-------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~-~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|++|||||... ....+.+...+++|+.++..+++++.+.. +. .++|++||.....+.+
T Consensus 78 g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~-------- 149 (520)
T PRK06484 78 GRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALP-------- 149 (520)
T ss_pred CCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCC--------
Confidence 5899999998621 12233456789999999999998887642 22 3899999976554211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+++.++.+. +++++++.||.+..+........ ........... .+
T Consensus 150 --------------~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~-~~~~~~~~~~~--~~- 211 (520)
T PRK06484 150 --------------KRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERA-GKLDPSAVRSR--IP- 211 (520)
T ss_pred --------------CCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhccc-chhhhHHHHhc--CC-
Confidence 12459999999999999988863 79999999998877642211000 00000111111 11
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+..++|+++++.+++...
T Consensus 212 -~~~~~~~~~va~~v~~l~~~~ 232 (520)
T PRK06484 212 -LGRLGRPEEIAEAVFFLASDQ 232 (520)
T ss_pred -CCCCcCHHHHHHHHHHHhCcc
Confidence 123568999999999988753
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=141.62 Aligned_cols=203 Identities=17% Similarity=0.181 Sum_probs=141.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Cc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 82 (328)
|+++||||++.||++++++|. +|++|++++|+.++.+.+...+...+ ..++.++++|++|+++++++++ .+
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRG-ATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999998 59999999998766655444332221 2347889999999988777654 58
Q ss_pred cEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|++|||||..... ..+...+..++|+.+..+++.++ .+....+++|++||.+...+.+
T Consensus 79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~------------- 145 (246)
T PRK05599 79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARR------------- 145 (246)
T ss_pred CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCc-------------
Confidence 9999999974321 11223355678888877666554 3321236899999975433110
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
....|+.+|.+.+.+++.++.+ .|++++++.||.+.++..... . +.. -.
T Consensus 146 ---------~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~--------------~---~~~--~~ 197 (246)
T PRK05599 146 ---------ANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTGM--------------K---PAP--MS 197 (246)
T ss_pred ---------CCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcCC--------------C---CCC--CC
Confidence 1234999999999999998886 379999999999877632110 0 000 02
Q ss_pred eeHHHHHHHHHHhhcCCCCCCcEEE
Q 020266 231 VNVKDVANAHIQAFEVPSANGRYCL 255 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~~~g~~~~ 255 (328)
..++|+|++++.++.++.....+.+
T Consensus 198 ~~pe~~a~~~~~~~~~~~~~~~~~~ 222 (246)
T PRK05599 198 VYPRDVAAAVVSAITSSKRSTTLWI 222 (246)
T ss_pred CCHHHHHHHHHHHHhcCCCCceEEe
Confidence 5789999999999997644334433
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=144.98 Aligned_cols=184 Identities=11% Similarity=0.057 Sum_probs=137.3
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----CccEEE
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDGVC 86 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~vi 86 (328)
+++||||+|+||+++++.|+++|++|++++|+.++...+... .++.++++|++|++++.++++ .+|++|
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv 74 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE-------LDVDAIVCDNTDPASLEEARGLFPHHLDTIV 74 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-------ccCcEEecCCCCHHHHHHHHHHHhhcCcEEE
Confidence 699999999999999999999999999999976554332221 135678899999998887765 589999
Q ss_pred EccCCCCC--------C--CCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020266 87 HTASPFYH--------D--AKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 87 h~a~~~~~--------~--~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
|||+.... . ..+.+...+++|+.++.++++++.+.. ..+++|++||.+ . +
T Consensus 75 ~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~--~--~--------------- 135 (223)
T PRK05884 75 NVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN--P--P--------------- 135 (223)
T ss_pred ECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC--C--C---------------
Confidence 99974110 0 123466889999999999999887642 236899999953 1 0
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcccee
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (328)
....|+.+|.+.+.+++.++.+ +|++++.+.||.+..+... . .... | ...
T Consensus 136 -------~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~~-----------~-~~~~---p-----~~~ 188 (223)
T PRK05884 136 -------AGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGYD-----------G-LSRT---P-----PPV 188 (223)
T ss_pred -------CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhhh-----------h-ccCC---C-----CCC
Confidence 0134999999999999999886 4799999999988655210 0 0111 1 127
Q ss_pred HHHHHHHHHHhhcCC
Q 020266 233 VKDVANAHIQAFEVP 247 (328)
Q Consensus 233 v~D~a~~~~~~~~~~ 247 (328)
++|+++++.+++...
T Consensus 189 ~~~ia~~~~~l~s~~ 203 (223)
T PRK05884 189 AAEIARLALFLTTPA 203 (223)
T ss_pred HHHHHHHHHHHcCch
Confidence 899999999988753
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-18 Score=151.18 Aligned_cols=190 Identities=17% Similarity=0.095 Sum_probs=129.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
++++|+|+||||+|+||++++++|+++|++|++++|+.++... .... ....+..+.+|++|++++.+.+.++|++
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~---~~~~--~~~~v~~v~~Dvsd~~~v~~~l~~IDiL 249 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITL---EING--EDLPVKTLHWQVGQEAALAELLEKVDIL 249 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH---HHhh--cCCCeEEEEeeCCCHHHHHHHhCCCCEE
Confidence 3568999999999999999999999999999999987644322 1111 1124678889999999999999999999
Q ss_pred EEccCCCC--CCCCCcchhhhhHHHHHHHHHHHHHhcCC---C----ccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020266 86 CHTASPFY--HDAKDPQVELLDPAVKGTLNVLNSCAKFP---S----IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (328)
Q Consensus 86 ih~a~~~~--~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~----~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 156 (328)
|||||... ....+.+.+.+++|+.++.++++++.+.. + ...+|.+|+ +... ++
T Consensus 250 InnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss-a~~~-~~---------------- 311 (406)
T PRK07424 250 IINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE-AEVN-PA---------------- 311 (406)
T ss_pred EECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc-cccc-CC----------------
Confidence 99998632 22223445789999999999999876531 1 123445444 2221 00
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHH
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDV 236 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~ 236 (328)
....|+.||.+.+.+......+.++.+..+.|+.+..+ . + + ...+.++|+
T Consensus 312 ------~~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~-----~------------~----~---~~~~spe~v 361 (406)
T PRK07424 312 ------FSPLYELSKRALGDLVTLRRLDAPCVVRKLILGPFKSN-----L------------N----P---IGVMSADWV 361 (406)
T ss_pred ------CchHHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCcCC-----C------------C----c---CCCCCHHHH
Confidence 01349999999988764433334554555555432211 0 0 0 124689999
Q ss_pred HHHHHHhhcCCC
Q 020266 237 ANAHIQAFEVPS 248 (328)
Q Consensus 237 a~~~~~~~~~~~ 248 (328)
|+.++.++++++
T Consensus 362 A~~il~~i~~~~ 373 (406)
T PRK07424 362 AKQILKLAKRDF 373 (406)
T ss_pred HHHHHHHHHCCC
Confidence 999999998753
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=152.36 Aligned_cols=205 Identities=17% Similarity=0.077 Sum_probs=142.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++++++||||+|+||..+++.|.++|++|++++|+... +.+....... +...+.+|++|++++.++++
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~-~~l~~~~~~~----~~~~~~~Dv~~~~~~~~~~~~~~~~~ 282 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG-EALAAVANRV----GGTALALDITAPDAPARIAEHLAERH 282 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHc----CCeEEEEeCCCHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999885332 2222222111 34578899999988777664
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+|||+||.... ...+.+...+++|+.++.++.+++.+. ...++||++||.+.+.+..
T Consensus 283 g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~----------- 351 (450)
T PRK08261 283 GGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNR----------- 351 (450)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC-----------
Confidence 58999999996432 123445578899999999999998763 1236899999976655321
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|...+.+++.++.+ .+++++++.||.+-.+.... .. ........... ...
T Consensus 352 -----------~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~-~~---~~~~~~~~~~~----~l~ 412 (450)
T PRK08261 352 -----------GQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA-IP---FATREAGRRMN----SLQ 412 (450)
T ss_pred -----------CChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc-cc---hhHHHHHhhcC----CcC
Confidence 1245999999988888888765 48999999999876543211 11 11111111111 112
Q ss_pred cceeHHHHHHHHHHhhcC
Q 020266 229 GWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~ 246 (328)
.....+|+++++.+++..
T Consensus 413 ~~~~p~dva~~~~~l~s~ 430 (450)
T PRK08261 413 QGGLPVDVAETIAWLASP 430 (450)
T ss_pred CCCCHHHHHHHHHHHhCh
Confidence 234678999999998864
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-16 Score=139.25 Aligned_cols=215 Identities=21% Similarity=0.223 Sum_probs=162.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|+|||||||+|++++++|+++|++|++..|+++....+. .++++..+|+.++..+...++++|.++++.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~---------~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~ 71 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA---------GGVEVVLGDLRDPKSLVAGAKGVDGVLLIS 71 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc---------CCcEEEEeccCCHhHHHHHhccccEEEEEe
Confidence 47999999999999999999999999999999988776633 478999999999999999999999999998
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhh
Q 020266 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (328)
Q Consensus 90 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 169 (328)
+... ... ...........+..+++. . +.++++++|.....-. ..+.|..
T Consensus 72 ~~~~-~~~----~~~~~~~~~~~~~a~~a~-~-~~~~~~~~s~~~~~~~------------------------~~~~~~~ 120 (275)
T COG0702 72 GLLD-GSD----AFRAVQVTAVVRAAEAAG-A-GVKHGVSLSVLGADAA------------------------SPSALAR 120 (275)
T ss_pred cccc-ccc----chhHHHHHHHHHHHHHhc-C-CceEEEEeccCCCCCC------------------------CccHHHH
Confidence 7643 221 122334444555555554 2 5678888888542210 1245999
Q ss_pred hhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHH-hCCCCC--CCCCccceeHHHHHHHHHHhhcC
Q 020266 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI-KGAQTY--PNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 170 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
+|..+|..+.+ .+++.+++|+..+|...... ...... .+.+.. +....+++..+|++.++..++..
T Consensus 121 ~~~~~e~~l~~----sg~~~t~lr~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~d~a~~~~~~l~~ 189 (275)
T COG0702 121 AKAAVEAALRS----SGIPYTTLRRAAFYLGAGAA-------FIEAAEAAGLPVIPRGIGRLSPIAVDDVAEALAAALDA 189 (275)
T ss_pred HHHHHHHHHHh----cCCCeEEEecCeeeeccchh-------HHHHHHhhCCceecCCCCceeeeEHHHHHHHHHHHhcC
Confidence 99999999966 58999999977777654321 133333 333322 44567899999999999999987
Q ss_pred CCCCC-cEEEec-CccCHHHHHHHHHHhCCC
Q 020266 247 PSANG-RYCLVE-RVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 247 ~~~~g-~~~~~~-~~~~~~el~~~i~~~~~~ 275 (328)
+...+ .|.+.+ +..+..++.+.+....+.
T Consensus 190 ~~~~~~~~~l~g~~~~~~~~~~~~l~~~~gr 220 (275)
T COG0702 190 PATAGRTYELAGPEALTLAELASGLDYTIGR 220 (275)
T ss_pred CcccCcEEEccCCceecHHHHHHHHHHHhCC
Confidence 75544 888887 689999999999999875
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=138.03 Aligned_cols=212 Identities=11% Similarity=0.007 Sum_probs=142.5
Q ss_pred CCCCeEEEECC--ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhc--------cCC---CCcEEEEEccC--CC
Q 020266 7 AAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLAL--------DGA---SERLQLFKANL--LE 71 (328)
Q Consensus 7 ~~~~~vlVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--------~~~---~~~~~~~~~Dl--~~ 71 (328)
+++|+++|||| +..||.++++.|++.|++|++ .|..+..+.+...... ... ......+.+|+ ++
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 85 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDT 85 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecCc
Confidence 67999999999 899999999999999999988 6665544333221110 000 11245788898 44
Q ss_pred cC------------------chHHhhC-------CccEEEEccCCC-------CCCCCCcchhhhhHHHHHHHHHHHHHh
Q 020266 72 EG------------------SFDSIVD-------GCDGVCHTASPF-------YHDAKDPQVELLDPAVKGTLNVLNSCA 119 (328)
Q Consensus 72 ~~------------------~~~~~~~-------~~d~vih~a~~~-------~~~~~~~~~~~~~~N~~~~~~l~~~~~ 119 (328)
++ ++.++++ .+|++|||||.. .....+.+...+++|+.++..+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~~ 165 (303)
T PLN02730 86 PEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHFG 165 (303)
T ss_pred cccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44 4455443 589999999642 122334567889999999999999887
Q ss_pred cCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc----CccEEEEcC
Q 020266 120 KFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK----SIDLVTINP 194 (328)
Q Consensus 120 ~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp 194 (328)
+.+ ..+++|++||.++..+.+ . ....|+.||.+.+.+.+.++.+. |++++.|-|
T Consensus 166 p~m~~~G~II~isS~a~~~~~p-----------------~----~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~P 224 (303)
T PLN02730 166 PIMNPGGASISLTYIASERIIP-----------------G----YGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISA 224 (303)
T ss_pred HHHhcCCEEEEEechhhcCCCC-----------------C----CchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEee
Confidence 752 226899999975433110 0 01249999999999999998863 689999999
Q ss_pred CcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 195 AMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 195 ~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
|.+-.+.... ............... |. ..+..++|++.++++++..
T Consensus 225 G~v~T~~~~~-~~~~~~~~~~~~~~~---pl--~r~~~peevA~~~~fLaS~ 270 (303)
T PLN02730 225 GPLGSRAAKA-IGFIDDMIEYSYANA---PL--QKELTADEVGNAAAFLASP 270 (303)
T ss_pred CCccCchhhc-ccccHHHHHHHHhcC---CC--CCCcCHHHHHHHHHHHhCc
Confidence 9998774321 111112211111111 21 2356899999999999874
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=137.30 Aligned_cols=221 Identities=19% Similarity=0.158 Sum_probs=153.7
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccC-CCCcEEEEEccCCCcCchHHhhC--
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
+.++++|+++||||+..||+++|+.|++.|.+|++.+|+.+........+.... ...++..+.+|+++.++++++++
T Consensus 3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~ 82 (270)
T KOG0725|consen 3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFA 82 (270)
T ss_pred CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHH
Confidence 345679999999999999999999999999999999999887655444332222 24578899999998877666554
Q ss_pred ------CccEEEEccCCCC------CCCCCcchhhhhHHHHH-HHHHHHHHhcC---CCccEEEEecchhhhccCCCCCC
Q 020266 81 ------GCDGVCHTASPFY------HDAKDPQVELLDPAVKG-TLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 ------~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~-~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
++|++|||||... +...+.++..+++|+.| +..+..++..+ .+...++++||.+...... +
T Consensus 83 ~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~-~-- 159 (270)
T KOG0725|consen 83 VEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGP-G-- 159 (270)
T ss_pred HHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCC-C--
Confidence 5899999998632 22355677889999995 66666666543 2446788888865443111 0
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCC-CcchHHHHHHHHhCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPT-LNTSAAAVLSLIKGA 220 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~ 220 (328)
....|+.+|.+.+.+.+..+.+ +|+++.++-||.+..+..... .......+......+
T Consensus 160 ------------------~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~ 221 (270)
T KOG0725|consen 160 ------------------SGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSK 221 (270)
T ss_pred ------------------CcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccc
Confidence 0134999999999999999886 489999999999998861111 100111122211111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...| .-.+..++|++..+.+++...
T Consensus 222 ~~~p--~gr~g~~~eva~~~~fla~~~ 246 (270)
T KOG0725|consen 222 GAVP--LGRVGTPEEVAEAAAFLASDD 246 (270)
T ss_pred cccc--cCCccCHHHHHHhHHhhcCcc
Confidence 1112 223678999999999988764
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=133.36 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=122.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhh-hhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-LALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
++++||||+|+||.+++++|+++|+ .|+++.|++......... ........++.++.+|+++++.+.++++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999996 688888876543322110 1111123467889999999887777654
Q ss_pred CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020266 81 GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 81 ~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
.+|.|||+|+... ....+.+...+++|+.++.++++++.+. +.+++|++||.++.++..
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~ii~~ss~~~~~~~~--------------- 144 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDL-PLDFFVLFSSVAGVLGNP--------------- 144 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccC-CcceEEEEccHHHhcCCC---------------
Confidence 3699999998632 1223344577899999999999999776 668999999977665321
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCccc
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVI 198 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~ 198 (328)
....|+.+|...+.+++.. ...+++++++.|+.+-
T Consensus 145 -------~~~~y~~sk~~~~~~~~~~-~~~~~~~~~~~~g~~~ 179 (180)
T smart00822 145 -------GQANYAAANAFLDALAAHR-RARGLPATSINWGAWA 179 (180)
T ss_pred -------CchhhHHHHHHHHHHHHHH-HhcCCceEEEeecccc
Confidence 1234999999999999655 4568999999998764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=135.15 Aligned_cols=202 Identities=16% Similarity=0.137 Sum_probs=139.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---CccE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCDG 84 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~ 84 (328)
|+|+||||+|+||++++++|+++| +.|....|+..... ...++.++++|++++++++++.+ ++|+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~~Dls~~~~~~~~~~~~~~id~ 70 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPDF----------QHDNVQWHALDVTDEAEIKQLSEQFTQLDW 70 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcccc----------ccCceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence 589999999999999999999985 55655566443210 12478899999999988766544 7899
Q ss_pred EEEccCCCCCC-----------CCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 85 VCHTASPFYHD-----------AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 85 vih~a~~~~~~-----------~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
||||||..... ..+.+...+++|+.++..+++.+.+.. +.++++++||...... .
T Consensus 71 li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~-------~---- 139 (235)
T PRK09009 71 LINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSIS-------D---- 139 (235)
T ss_pred EEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccccc-------c----
Confidence 99999975321 112234678899999998888776642 3358999988422110 0
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh-----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
+. .+ ....|+.+|.+.+.+++.++.+ .++++..+.||.+.++..... .... +
T Consensus 140 ~~---~~-----~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~-----------~~~~---~- 196 (235)
T PRK09009 140 NR---LG-----GWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPF-----------QQNV---P- 196 (235)
T ss_pred CC---CC-----CcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcch-----------hhcc---c-
Confidence 00 00 1245999999999999998865 378899999999887753210 0111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCCcEEEe
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~ 256 (328)
...+..++|+|++++.++.... ..|.+...
T Consensus 197 -~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~ 228 (235)
T PRK09009 197 -KGKLFTPEYVAQCLLGIIANATPAQSGSFLAY 228 (235)
T ss_pred -cCCCCCHHHHHHHHHHHHHcCChhhCCcEEee
Confidence 1236789999999999998653 35544433
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=133.55 Aligned_cols=201 Identities=12% Similarity=0.075 Sum_probs=150.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
.+++.||||||++.+|+.++.+|+++|..+.+.+.+........+..+.. .++..+.+|+++++++.+..+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~---g~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI---GEAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc---CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 35889999999999999999999999999999999888776655554332 278899999999998776664
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|++|||||.+.. ..++..+..+++|+.+....+++..+. .+.+++|.++|+.+..|.+
T Consensus 113 G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~----------- 181 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPA----------- 181 (300)
T ss_pred CCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCc-----------
Confidence 68999999997432 334455678999999987777766543 1567999999987766432
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc------CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK------SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~------~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|..||.++..+.+++..+. |++++.+-|+.+-.... .. ... -.
T Consensus 182 -----------gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf-----------~~----~~~-~~ 234 (300)
T KOG1201|consen 182 -----------GLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMF-----------DG----ATP-FP 234 (300)
T ss_pred -----------cchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecccccc-----------CC----CCC-Cc
Confidence 12349999999999988887542 68888888886653221 11 100 02
Q ss_pred CCccceeHHHHHHHHHHhhcCCC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
.....+.++.+|+.++.++....
T Consensus 235 ~l~P~L~p~~va~~Iv~ai~~n~ 257 (300)
T KOG1201|consen 235 TLAPLLEPEYVAKRIVEAILTNQ 257 (300)
T ss_pred cccCCCCHHHHHHHHHHHHHcCC
Confidence 23457899999999999998653
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-17 Score=137.07 Aligned_cols=167 Identities=13% Similarity=0.065 Sum_probs=123.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||++.||+++++.|+++|++|++++|+.++.+.+....... ..++..+.+|+++++++.++++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL--TDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999877655543333222 2457788999999988776653
Q ss_pred --CccEEEEccCCCC---CC---CCCcchhhhhHHHHHHHHHHHHHhc----CCCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 --GCDGVCHTASPFY---HD---AKDPQVELLDPAVKGTLNVLNSCAK----FPSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 --~~d~vih~a~~~~---~~---~~~~~~~~~~~N~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|++|||||... .. ..+.+.+.+++|+.++..+++++.+ .++.+++|++||.....
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~----------- 149 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDHQ----------- 149 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC-----------
Confidence 5899999997421 11 1123335667788887777665443 21246899999853110
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGP 200 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~ 200 (328)
....|+.+|.+.+.+.+.++.+ +++++..|.||.+-.+
T Consensus 150 --------------~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 150 --------------DLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred --------------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 1134999999999999998885 4899999999988776
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-17 Score=141.61 Aligned_cols=232 Identities=17% Similarity=0.156 Sum_probs=142.7
Q ss_pred EEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------CccE
Q 020266 13 CVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GCDG 84 (328)
Q Consensus 13 lVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d~ 84 (328)
+||||++.||.+++++|+++| ++|++.+|+.++.......+.. ...++.++.+|++|.+++.++++ .+|+
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~ 78 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGM--PKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDV 78 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCE
Confidence 699999999999999999999 9999999976554433332211 12467889999999998777664 5799
Q ss_pred EEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC---C--ccEEEEecchhhhccCCCCC-CCC---c--
Q 020266 85 VCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---S--IKRVVLTSSMAAVLNTGKPR-TPD---V-- 147 (328)
Q Consensus 85 vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~~~~v~~SS~~~~~~~~~~~-~~~---~-- 147 (328)
+|||||.... ...+.+...+++|+.|+..+++.+.+.. + .+++|++||.....+..... .+. .
T Consensus 79 lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~ 158 (308)
T PLN00015 79 LVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 158 (308)
T ss_pred EEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhh
Confidence 9999986321 1233456789999999888877665431 2 46899999975432100000 000 0
Q ss_pred -----cccCCCC---CCccccccCCchhhhhhHHHHHHHHHHHHh----cCccEEEEcCCcccC-CCCCCCCcchHHHHH
Q 020266 148 -----VVDETWF---SDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVIG-PLLQPTLNTSAAAVL 214 (328)
Q Consensus 148 -----~~~E~~~---~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~~v~G-~~~~~~~~~~~~~~~ 214 (328)
...+... .... .......|+.||.+...+++.++++ .|++++++.||.|.. +...... .......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~-~~~~~~~ 236 (308)
T PLN00015 159 RGLAGGLNGLNSSAMIDGG-EFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHI-PLFRLLF 236 (308)
T ss_pred hhhhcccCCccchhhcccc-CCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCcccccccc-HHHHHHH
Confidence 0000000 0000 0012345999999977777777765 379999999999954 3221111 1111110
Q ss_pred HHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcE
Q 020266 215 SLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRY 253 (328)
Q Consensus 215 ~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~ 253 (328)
...... + ...+..+++.|+.++.++.... ..|.|
T Consensus 237 ~~~~~~---~--~~~~~~pe~~a~~~~~l~~~~~~~~~G~~ 272 (308)
T PLN00015 237 PPFQKY---I--TKGYVSEEEAGKRLAQVVSDPSLTKSGVY 272 (308)
T ss_pred HHHHHH---H--hcccccHHHhhhhhhhhccccccCCCccc
Confidence 001100 0 1125689999999998887532 24555
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=137.92 Aligned_cols=226 Identities=18% Similarity=0.107 Sum_probs=156.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+.+++++|||||..||..++++|+++|.+|+...|+.++.......+.......++.++++|+++..++++..+
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999999999987666655554444445688899999999998887665
Q ss_pred --CccEEEEccCCCCC---CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 --GCDGVCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
..|++|||||.+.. ...+-.+..+.+|..|...|.+.+.... ...|+|++||... +.. ..-.....|.
T Consensus 112 ~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~--~~~--~~~~~l~~~~ 187 (314)
T KOG1208|consen 112 EGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG--GGK--IDLKDLSGEK 187 (314)
T ss_pred CCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc--cCc--cchhhccchh
Confidence 56999999998432 2334566889999999888877655431 2269999999643 110 0011111122
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
..... ....|+.||.+-.....+++++. |+.+..+.||.+.++.... ...+...+...+... =+
T Consensus 188 ~~~~~-----~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~r-~~~~~~~l~~~l~~~--------~~ 253 (314)
T KOG1208|consen 188 AKLYS-----SDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLSR-VNLLLRLLAKKLSWP--------LT 253 (314)
T ss_pred ccCcc-----chhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccceec-chHHHHHHHHHHHHH--------hc
Confidence 11000 11249999999999999998875 6999999999999985443 222223233322211 01
Q ss_pred eeHHHHHHHHHHhhcCCCC
Q 020266 231 VNVKDVANAHIQAFEVPSA 249 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~~ 249 (328)
-..+.-|+.++.++.+|..
T Consensus 254 ks~~~ga~t~~~~a~~p~~ 272 (314)
T KOG1208|consen 254 KSPEQGAATTCYAALSPEL 272 (314)
T ss_pred cCHHHHhhheehhccCccc
Confidence 2677788888888877744
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-16 Score=122.98 Aligned_cols=208 Identities=15% Similarity=0.127 Sum_probs=151.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
.+.|.++||||+..||++++..|.+.|++|.+.+++....+.....+.. ..+-..+.+|+.++.++...++
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g---~~~h~aF~~DVS~a~~v~~~l~e~~k~~ 88 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG---YGDHSAFSCDVSKAHDVQNTLEEMEKSL 88 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC---CCccceeeeccCcHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999988776665554432 2356678899999988777554
Q ss_pred -CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC-----CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 -GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF-----PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 -~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+++++||||...+. ..+.|+.++.+|+.|+..+.+++.+. .+..++|.+||+-..-|..
T Consensus 89 g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~--------- 159 (256)
T KOG1200|consen 89 GTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNF--------- 159 (256)
T ss_pred CCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccc---------
Confidence 579999999985543 35678899999999999998877553 1233899999963222211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
..+.|+.+|.-.=.+.+.++++ .++++..+-||++-.|-... .....+.++...-|
T Consensus 160 -------------GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~---mp~~v~~ki~~~iP----- 218 (256)
T KOG1200|consen 160 -------------GQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEA---MPPKVLDKILGMIP----- 218 (256)
T ss_pred -------------cchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhh---cCHHHHHHHHccCC-----
Confidence 1234888776554454444443 48999999999998885322 13456666666543
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+-..+|+|..++++....
T Consensus 219 mgr~G~~EevA~~V~fLAS~~ 239 (256)
T KOG1200|consen 219 MGRLGEAEEVANLVLFLASDA 239 (256)
T ss_pred ccccCCHHHHHHHHHHHhccc
Confidence 234668899999999888543
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-17 Score=130.31 Aligned_cols=150 Identities=20% Similarity=0.228 Sum_probs=116.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC-CeEEEEecC--CCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRD--PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
|+++||||+|.||+.+++.|+++| ..|+++.|+ .+....+...... ...++.++++|++++++++++++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKA--PGAKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHH--TTSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence 689999999999999999999995 577888888 2223333222222 23689999999999988877775
Q ss_pred -CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 81 -GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 81 -~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
.+|++|||||..... ..+.+.+.+++|+.+...+.+++.+. +.+++|++||.+...+.+
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~g~iv~~sS~~~~~~~~-------------- 143 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQ-GGGKIVNISSIAGVRGSP-------------- 143 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHH-TTEEEEEEEEGGGTSSST--------------
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehheec-cccceEEecchhhccCCC--------------
Confidence 579999999975422 23445688999999999999999884 667999999987665321
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHh
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~ 184 (328)
....|+.+|.+.+.+++.++++
T Consensus 144 --------~~~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 144 --------GMSAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp --------TBHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CChhHHHHHHHHHHHHHHHHHh
Confidence 2245999999999999999876
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=125.73 Aligned_cols=217 Identities=18% Similarity=0.156 Sum_probs=152.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
.++|++++||+.|.||..++++|+++|..+.++.-+.+..+...++... ....++.|+++|+++..++++.++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai-~p~~~v~F~~~DVt~~~~~~~~f~ki~~~f 81 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAI-NPSVSVIFIKCDVTNRGDLEAAFDKILATF 81 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhcc-CCCceEEEEEeccccHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999888888777766555444433 335689999999999999888886
Q ss_pred -CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC------CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 81 -GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP------SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 81 -~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
.+|++||.||... +.+++..+.+|+.|..+=...+...+ ..+-+|.+||....+..+
T Consensus 82 g~iDIlINgAGi~~---dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p------------- 145 (261)
T KOG4169|consen 82 GTIDILINGAGILD---DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMP------------- 145 (261)
T ss_pred CceEEEEccccccc---chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccc-------------
Confidence 5799999999865 35577899999887666655554431 234699999975554111
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHH-----hcCccEEEEcCCcccCCCC-----CCCCcchHHHHHHHHhCCCCC
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAK-----EKSIDLVTINPAMVIGPLL-----QPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~~~~~~~ilRp~~v~G~~~-----~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.||+..-.+.|+++. +.|+++..+-||.+-..-. ...+......+...++..
T Consensus 146 ---------~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~l~~~--- 213 (261)
T KOG4169|consen 146 ---------VFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEALERA--- 213 (261)
T ss_pred ---------cchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHHHHHc---
Confidence 113399999998888888554 4599999999997643200 000100112223333221
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCCCCcEEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~ 257 (328)
.-....+++..++.+++.+..+-+|.+..
T Consensus 214 -----~~q~~~~~a~~~v~aiE~~~NGaiw~v~~ 242 (261)
T KOG4169|consen 214 -----PKQSPACCAINIVNAIEYPKNGAIWKVDS 242 (261)
T ss_pred -----ccCCHHHHHHHHHHHHhhccCCcEEEEec
Confidence 13477899999999999864444777764
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-15 Score=114.75 Aligned_cols=202 Identities=19% Similarity=0.177 Sum_probs=145.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|.|+||||-+|+.|+++...+||+|.++.|++++... .+.+..++.|+.|++.+.+.+.+.|+||..-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~----------~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~ 70 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA----------RQGVTILQKDIFDLTSLASDLAGHDAVISAF 70 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc----------cccceeecccccChhhhHhhhcCCceEEEec
Confidence 579999999999999999999999999999999887643 1467889999999999999999999999875
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhh
Q 020266 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (328)
Q Consensus 90 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 169 (328)
+... .++. ..-......|++..+.. ++.|++.++..++.+-.+ ...-.+.|.-|. -.|..
T Consensus 71 ~~~~---~~~~----~~~~k~~~~li~~l~~a-gv~RllVVGGAGSL~id~------g~rLvD~p~fP~------ey~~~ 130 (211)
T COG2910 71 GAGA---SDND----ELHSKSIEALIEALKGA-GVPRLLVVGGAGSLEIDE------GTRLVDTPDFPA------EYKPE 130 (211)
T ss_pred cCCC---CChh----HHHHHHHHHHHHHHhhc-CCeeEEEEcCccceEEcC------CceeecCCCCch------hHHHH
Confidence 5421 1111 11233467778888887 888999999988777432 122223332222 23677
Q ss_pred hhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCC-CCCCccceeHHHHHHHHHHhhcCC
Q 020266 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTY-PNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 170 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.+..+|. +..+..+.+++||.+-|+..|-|+..... ...|+ .+. ...--++|+..|.|-+++.-++++
T Consensus 131 A~~~ae~-L~~Lr~~~~l~WTfvSPaa~f~PGerTg~---------yrlggD~ll~n~~G~SrIS~aDYAiA~lDe~E~~ 200 (211)
T COG2910 131 ALAQAEF-LDSLRAEKSLDWTFVSPAAFFEPGERTGN---------YRLGGDQLLVNAKGESRISYADYAIAVLDELEKP 200 (211)
T ss_pred HHHHHHH-HHHHhhccCcceEEeCcHHhcCCccccCc---------eEeccceEEEcCCCceeeeHHHHHHHHHHHHhcc
Confidence 7777664 44555556799999999999999654321 11222 222 233457999999999999999988
Q ss_pred CCCC
Q 020266 248 SANG 251 (328)
Q Consensus 248 ~~~g 251 (328)
....
T Consensus 201 ~h~r 204 (211)
T COG2910 201 QHIR 204 (211)
T ss_pred cccc
Confidence 6544
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=126.55 Aligned_cols=186 Identities=19% Similarity=0.177 Sum_probs=137.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
...|-|||||+-...|+.+|++|.+.|+.|.+-...++..+.+....+ .++...++.|++++++++++.+
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~----s~rl~t~~LDVT~~esi~~a~~~V~~~l 102 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK----SPRLRTLQLDVTKPESVKEAAQWVKKHL 102 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc----CCcceeEeeccCCHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999977776666554432 4678889999999999888776
Q ss_pred ---CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC--CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF--PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
+.-.||||||... ....+.+...+++|+.|+.++.++..+. ...+|+|++||++.-- +
T Consensus 103 ~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~--~--------- 171 (322)
T KOG1610|consen 103 GEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRV--A--------- 171 (322)
T ss_pred ccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCc--c---------
Confidence 4569999999532 2234456688999999999998887654 1346999999965321 0
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~ 220 (328)
.| ...+|..||.+.|.+....+.| +|+++.+|-|| +|-..... ...+...+..+....
T Consensus 172 ------~p-----~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T~l~~-~~~~~~~~~~~w~~l 232 (322)
T KOG1610|consen 172 ------LP-----ALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKTNLAN-PEKLEKRMKEIWERL 232 (322)
T ss_pred ------Cc-----ccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-ccccccCC-hHHHHHHHHHHHhcC
Confidence 00 1245999999999999988776 59999999999 44433221 222334444444443
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-15 Score=129.39 Aligned_cols=216 Identities=13% Similarity=0.051 Sum_probs=134.0
Q ss_pred CcccccCCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCC---------CChhhhhhhhhccCCCC-----cEEE
Q 020266 1 MSSVAAAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDP---------NDPKKTRHLLALDGASE-----RLQL 64 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~-----~~~~ 64 (328)
||+. .+++|+++||||+ ..||+++++.|+++|++|++.+|.+ +..+. ...... .... ++..
T Consensus 1 ~~~~-~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~~~~~~~~~~ 77 (299)
T PRK06300 1 MLKI-DLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKF-DASRKL-SNGSLLTFAKIYP 77 (299)
T ss_pred CCCc-CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccc-cccccc-cccchhhhhhHHH
Confidence 4433 3578999999995 9999999999999999999976531 11000 000000 0000 0111
Q ss_pred EEccCCCcC------------------chHHhhC-------CccEEEEccCCCC-------CCCCCcchhhhhHHHHHHH
Q 020266 65 FKANLLEEG------------------SFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTL 112 (328)
Q Consensus 65 ~~~Dl~~~~------------------~~~~~~~-------~~d~vih~a~~~~-------~~~~~~~~~~~~~N~~~~~ 112 (328)
+..|+.+++ +++++++ ++|++|||||... ....+.+...+++|+.++.
T Consensus 78 ~~~d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~ 157 (299)
T PRK06300 78 MDASFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFV 157 (299)
T ss_pred hhhhcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHH
Confidence 223433332 2343332 5899999997521 1223456688899999999
Q ss_pred HHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh----cCc
Q 020266 113 NVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSI 187 (328)
Q Consensus 113 ~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~~ 187 (328)
++++++.+.+ ..+++|.+||+....+.+ . ....|+.+|.+.+.+++.++.+ +|+
T Consensus 158 ~l~~a~~p~m~~~G~ii~iss~~~~~~~p-----------------~----~~~~Y~asKaAl~~lt~~la~el~~~~gI 216 (299)
T PRK06300 158 SLLSHFGPIMNPGGSTISLTYLASMRAVP-----------------G----YGGGMSSAKAALESDTKVLAWEAGRRWGI 216 (299)
T ss_pred HHHHHHHHHhhcCCeEEEEeehhhcCcCC-----------------C----ccHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 9999888752 235799999865443211 0 0124999999999999999875 379
Q ss_pred cEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 188 ~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
+++.|.||.+-.+..... .............. + ...+..++|++.++.+++..
T Consensus 217 rVn~V~PG~v~T~~~~~~-~~~~~~~~~~~~~~---p--~~r~~~peevA~~v~~L~s~ 269 (299)
T PRK06300 217 RVNTISAGPLASRAGKAI-GFIERMVDYYQDWA---P--LPEPMEAEQVGAAAAFLVSP 269 (299)
T ss_pred EEEEEEeCCccChhhhcc-cccHHHHHHHHhcC---C--CCCCcCHHHHHHHHHHHhCc
Confidence 999999999877642110 00111111111111 1 12356899999999998875
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-16 Score=121.32 Aligned_cols=209 Identities=19% Similarity=0.149 Sum_probs=150.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Ccc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCD 83 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d 83 (328)
..++.|++||+.-.||+.++..|.+.|.+|+++.|.+.....+-+. . +.-++.+.+|+.+.+.+++.+- .+|
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e---~--p~~I~Pi~~Dls~wea~~~~l~~v~pid 79 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE---T--PSLIIPIVGDLSAWEALFKLLVPVFPID 79 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh---C--CcceeeeEecccHHHHHHHhhcccCchh
Confidence 4589999999999999999999999999999999998766554332 2 2348899999999887777765 369
Q ss_pred EEEEccCC-----CCCCCCCcchhhhhHHHHHHHHHHHHHhc----CCCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 84 GVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAK----FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 84 ~vih~a~~-----~~~~~~~~~~~~~~~N~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
.++|+||. +.......++..+++|+.+..++.+...+ ....+.+|.+||.++... +
T Consensus 80 gLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~----------~----- 144 (245)
T KOG1207|consen 80 GLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRP----------L----- 144 (245)
T ss_pred hhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccc----------c-----
Confidence 99999986 22334455567889999998888776332 223456999999765431 1
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccce
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (328)
..++.|..+|.+-+.+.+..+-+. .+++..+.|..|........+.- +.--+.++... ..-.|.
T Consensus 145 -------~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSD-P~K~k~mL~ri-----Pl~rFa 211 (245)
T KOG1207|consen 145 -------DNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSD-PDKKKKMLDRI-----PLKRFA 211 (245)
T ss_pred -------CCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCC-chhccchhhhC-----chhhhh
Confidence 134669999999999999998875 58999999999976522211110 01011122211 123488
Q ss_pred eHHHHHHHHHHhhcCCC
Q 020266 232 NVKDVANAHIQAFEVPS 248 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~~ 248 (328)
.+++++.++..++...+
T Consensus 212 EV~eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 212 EVDEVVNAVLFLLSDNS 228 (245)
T ss_pred HHHHHHhhheeeeecCc
Confidence 99999999999987643
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-16 Score=133.26 Aligned_cols=212 Identities=18% Similarity=0.147 Sum_probs=147.7
Q ss_pred CCc--cHHHHHHHHHHHHCCCeEEEEecCCCCh-hhhhhhhhccCCCCcEEEEEccCCCcCchHHhh--------CCccE
Q 020266 16 GAS--GYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIV--------DGCDG 84 (328)
Q Consensus 16 Gat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--------~~~d~ 84 (328)
|++ +.||+++++.|+++|++|++++|+.++. ..+..+....+ ..++.+|+++++++.+++ .++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~----~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG----AEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT----SEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC----CceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 666 9999999999999999999999988763 22333333222 335999999998877764 36899
Q ss_pred EEEccCCCCC----C-----CCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 85 VCHTASPFYH----D-----AKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 85 vih~a~~~~~----~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
+||+++.... . ..+.+...+++|+.++..+++++.+.. ..+++|++||.+.....+
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~~-------------- 142 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPMP-------------- 142 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBST--------------
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccCc--------------
Confidence 9999987443 1 123456778899999999999886541 236899999975433110
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHh----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
....|+.+|.+.+.+++.++.+ +|+++.+|.||.+..+.... ......+........| ...+
T Consensus 143 --------~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~-~~~~~~~~~~~~~~~p-----l~r~ 208 (241)
T PF13561_consen 143 --------GYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTER-IPGNEEFLEELKKRIP-----LGRL 208 (241)
T ss_dssp --------TTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHH-HHTHHHHHHHHHHHST-----TSSH
T ss_pred --------cchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhc-cccccchhhhhhhhhc-----cCCC
Confidence 1246999999999999998874 47999999999988763110 0011223333333222 2336
Q ss_pred eeHHHHHHHHHHhhcCC--CCCCcEEEecCc
Q 020266 231 VNVKDVANAHIQAFEVP--SANGRYCLVERV 259 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~--~~~g~~~~~~~~ 259 (328)
..++|+|.++++++... ...|.....++.
T Consensus 209 ~~~~evA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 209 GTPEEVANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp BEHHHHHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred cCHHHHHHHHHHHhCccccCccCCeEEECCC
Confidence 79999999999999864 346755555443
|
... |
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-15 Score=125.06 Aligned_cols=208 Identities=18% Similarity=0.203 Sum_probs=153.2
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Cc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 82 (328)
++|+||||+..||..++..+..+|++|.++.|+..+.....+.+........+.+..+|+.|++.+...++ .+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~ 113 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI 113 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence 58999999999999999999999999999999999887766666555444568899999999998887776 36
Q ss_pred cEEEEccCCC-----CCCCCCcchhhhhHHHHHHHHHHHHHhcCC----CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~-----~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|.+|||||.. .+.........+++|..|+.++++++.+.+ +.++++.+||..+.++-.
T Consensus 114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~------------- 180 (331)
T KOG1210|consen 114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIY------------- 180 (331)
T ss_pred ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCcc-------------
Confidence 9999999862 222233445778999999999998876542 234899999977666321
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
..+.|+.+|.+.-.+......| +++.++..-|+.+..|+.... +.......++..|. -+-
T Consensus 181 ---------GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~E-n~tkP~~t~ii~g~-------ss~ 243 (331)
T KOG1210|consen 181 ---------GYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERE-NKTKPEETKIIEGG-------SSV 243 (331)
T ss_pred ---------cccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccc-cccCchheeeecCC-------CCC
Confidence 2355888887766666665554 589999999999999864321 11112223333332 245
Q ss_pred eeHHHHHHHHHHhhcCC
Q 020266 231 VNVKDVANAHIQAFEVP 247 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~ 247 (328)
+..+++|.+++.=+.+.
T Consensus 244 ~~~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 244 IKCEEMAKAIVKGMKRG 260 (331)
T ss_pred cCHHHHHHHHHhHHhhc
Confidence 78999999998777654
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-15 Score=125.22 Aligned_cols=171 Identities=22% Similarity=0.258 Sum_probs=125.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC--hhhhhhhhhccCCC-CcEEEEEccCCC-cCchHHhhC--
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALDGAS-ERLQLFKANLLE-EGSFDSIVD-- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~-~~~~~~~~Dl~~-~~~~~~~~~-- 80 (328)
+++|+|+||||++.||.++++.|+++|+.|++..|.... ...+..... ... ..+.+...|+++ .+++..+++
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~~~ 80 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVAAA 80 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence 458899999999999999999999999999988887654 233222222 111 357788899998 777666554
Q ss_pred -----CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 -----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 -----~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|++|||||... ....+.+...+++|+.+...+.+++.+....+++|.+||.... ... ..
T Consensus 81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~-~~------ 152 (251)
T COG1028 81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGP-PG------ 152 (251)
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCC-CC------
Confidence 4899999999742 1223456688999999999988865554222289999997544 211 00
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPL 201 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~ 201 (328)
...|+.||.+.+.+.+.++.+ +|++++.+.||.+-.+.
T Consensus 153 --------------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~~ 193 (251)
T COG1028 153 --------------QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPM 193 (251)
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCcc
Confidence 144999999999999998865 58999999999665543
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.6e-16 Score=121.59 Aligned_cols=163 Identities=19% Similarity=0.163 Sum_probs=124.8
Q ss_pred CCeEEEECC-ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 9 GKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 9 ~~~vlVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
.|+|||||+ .|.||.+|+++|.++|+.|++..|+.+....|+... ++.....|+++++++.....
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~-------gl~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF-------GLKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh-------CCeeEEeccCChHHHHHHHHHHhhCCC
Confidence 678999876 599999999999999999999999999888876543 57889999999998777654
Q ss_pred -CccEEEEccCCC---C--CCCCCcchhhhhHHHHHHHHHHHHHhcC--CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 -GCDGVCHTASPF---Y--HDAKDPQVELLDPAVKGTLNVLNSCAKF--PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 -~~d~vih~a~~~---~--~~~~~~~~~~~~~N~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
..|+++||||.. + +..-...++.+++|+.|..++.++.... ...+.+|+++|..++-..
T Consensus 80 Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpf------------- 146 (289)
T KOG1209|consen 80 GKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPF------------- 146 (289)
T ss_pred CceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEecc-------------
Confidence 469999999861 1 2222334578899999988887766543 134579999997544311
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGP 200 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~ 200 (328)
...+.|.+||++...+.+.++-+ +|++++.+-+|.|-..
T Consensus 147 ---------pf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~ 188 (289)
T KOG1209|consen 147 ---------PFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATD 188 (289)
T ss_pred ---------chhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceecc
Confidence 13366999999999988887654 5889998888887654
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=123.19 Aligned_cols=199 Identities=15% Similarity=0.014 Sum_probs=129.6
Q ss_pred HHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----CccEEEEccCCCCCCCCCcc
Q 020266 25 LVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDGVCHTASPFYHDAKDPQ 100 (328)
Q Consensus 25 l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~vih~a~~~~~~~~~~~ 100 (328)
+++.|+++|++|++++|+.++.. ...++++|++|.+++.++++ ++|+||||||.... .++
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~-------------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~~---~~~ 64 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT-------------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPGT---APV 64 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh-------------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCCC---CCH
Confidence 47889999999999999865431 12457899999998888776 58999999997532 345
Q ss_pred hhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCc------cccccCCchhhhhhHH
Q 020266 101 VELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP------EVCKQSELWYPLSKTL 173 (328)
Q Consensus 101 ~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~------~~~~~~~~~Y~~sK~~ 173 (328)
...+++|+.++..+++++.+.. ..++||++||.+++.... ......++.|...... ..+....+.|+.||.+
T Consensus 65 ~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a 143 (241)
T PRK12428 65 ELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQ-RLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEA 143 (241)
T ss_pred HHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhcccc-chHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHH
Confidence 6889999999999999987642 236899999976543111 0000001101000000 0011134669999999
Q ss_pred HHHHHHHHH-H---hcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 174 AEDAAWKFA-K---EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 174 ~E~~~~~~~-~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
.+.+.+.++ . .+|+++++|+||.+.++........... ...... ..+ ...+..++|+|+++.+++..
T Consensus 144 ~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~---~~~~~~-~~~--~~~~~~pe~va~~~~~l~s~ 214 (241)
T PRK12428 144 LILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQ---ERVDSD-AKR--MGRPATADEQAAVLVFLCSD 214 (241)
T ss_pred HHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhh---Hhhhhc-ccc--cCCCCCHHHHHHHHHHHcCh
Confidence 999999888 4 3589999999999998853221100000 000000 011 22367899999999998864
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=116.61 Aligned_cols=203 Identities=20% Similarity=0.216 Sum_probs=137.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHC-CCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
|.+++|+||||+..||..|+++|++. |.++++. .|+++++.. .+....-.++++..++.|+++.+++.++++
T Consensus 1 Mspksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~--~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~ 78 (249)
T KOG1611|consen 1 MSPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAAT--ELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEK 78 (249)
T ss_pred CCCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhH--HHHHhhccCCceEEEEEecccHHHHHHHHHHHHh
Confidence 44677999999999999999999986 6776555 455666422 111111235789999999999888776654
Q ss_pred -----CccEEEEccCCCCCC------CCCcchhhhhHHHHHHHHHHHHHhcC---CC-----------ccEEEEecchhh
Q 020266 81 -----GCDGVCHTASPFYHD------AKDPQVELLDPAVKGTLNVLNSCAKF---PS-----------IKRVVLTSSMAA 135 (328)
Q Consensus 81 -----~~d~vih~a~~~~~~------~~~~~~~~~~~N~~~~~~l~~~~~~~---~~-----------~~~~v~~SS~~~ 135 (328)
+.+++++|||..... ....+.+.+++|+.|+..+.+++.+. .. ...+|++||.+.
T Consensus 79 iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~ 158 (249)
T KOG1611|consen 79 IVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAG 158 (249)
T ss_pred hcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeecccc
Confidence 679999999973221 12335577899999998888766432 01 126899999643
Q ss_pred hccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHH
Q 020266 136 VLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAA 212 (328)
Q Consensus 136 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~ 212 (328)
--+.. .+ .+...|..||.+...+.++.+-+. ++-++.+.||.|-.....
T Consensus 159 s~~~~-------------~~------~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg--------- 210 (249)
T KOG1611|consen 159 SIGGF-------------RP------GGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGG--------- 210 (249)
T ss_pred ccCCC-------------CC------cchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCC---------
Confidence 22100 00 124669999999999999987754 677888999988654211
Q ss_pred HHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC--CCCCCcE
Q 020266 213 VLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV--PSANGRY 253 (328)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~--~~~~g~~ 253 (328)
.-..+.+++-+..++..+.+ +..+|.|
T Consensus 211 --------------~~a~ltveeSts~l~~~i~kL~~~hnG~f 239 (249)
T KOG1611|consen 211 --------------KKAALTVEESTSKLLASINKLKNEHNGGF 239 (249)
T ss_pred --------------CCcccchhhhHHHHHHHHHhcCcccCcce
Confidence 11255677777777777654 3344533
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=117.24 Aligned_cols=163 Identities=19% Similarity=0.264 Sum_probs=113.1
Q ss_pred eEEEECCccHHHHHHHHHHHHCC-CeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 11 VVCVTGASGYIASWLVKLLLSRG-YTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+++||||+|.||..+++.|+++| .+|+++.|+. ..................+.++.+|++|++++.+++. .
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 68999999999999999999997 5799999983 2222211111111124589999999999999888875 4
Q ss_pred ccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020266 82 CDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (328)
Q Consensus 82 ~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 156 (328)
++.|||+|+...+. ..+.....+...+.|+.+|.++.... ..+.||.+||++.+.|.+
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~-~l~~~i~~SSis~~~G~~---------------- 144 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENR-PLDFFILFSSISSLLGGP---------------- 144 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTT-TTSEEEEEEEHHHHTT-T----------------
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcC-CCCeEEEECChhHhccCc----------------
Confidence 68999999874322 22334466777899999999999886 888999999998877532
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcc
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMV 197 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v 197 (328)
..+.|+..-...+.+.+.... .+.++++|..+..
T Consensus 145 ------gq~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~W 178 (181)
T PF08659_consen 145 ------GQSAYAAANAFLDALARQRRS-RGLPAVSINWGAW 178 (181)
T ss_dssp ------TBHHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-EB
T ss_pred ------chHhHHHHHHHHHHHHHHHHh-CCCCEEEEEcccc
Confidence 125599999888888876644 5899998886643
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=116.57 Aligned_cols=273 Identities=18% Similarity=0.165 Sum_probs=171.6
Q ss_pred CCCeEEEECCccHHHHHHHH-----HHHHCC----CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 8 AGKVVCVTGASGYIASWLVK-----LLLSRG----YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~-----~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
+.++.++-+++|+|+.+|.. .+-+-+ |+|.++.|++.+.+. ++...|..-..
T Consensus 11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~ri--------------tw~el~~~Gip----- 71 (315)
T KOG3019|consen 11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKARI--------------TWPELDFPGIP----- 71 (315)
T ss_pred ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCccc--------------ccchhcCCCCc-----
Confidence 45678889999999998877 333333 899999999876533 33222322111
Q ss_pred hCCccEEEEccCC-----CCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCc-cEEEEecchhhhccCCCCCCCCccccCC
Q 020266 79 VDGCDGVCHTASP-----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI-KRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 79 ~~~~d~vih~a~~-----~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
-.|+..+|+++. ...+......++...-+..+..|.++....+.. +.+|.+|.++ +|- ......++|+
T Consensus 72 -~sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva-~y~----pS~s~eY~e~ 145 (315)
T KOG3019|consen 72 -ISCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVA-VYV----PSESQEYSEK 145 (315)
T ss_pred -eehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeE-Eec----cccccccccc
Confidence 134444554442 333334444455555566788899998887543 4689999875 552 1234556777
Q ss_pred CCCCccccccCCchhhhhhH--HHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC-CCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKT--LAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT-YPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~--~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 229 (328)
.+...- + | .|++ .=|....... ...+++++|.|.|.|.+......++ ..-++..|+|+ .|+|.+.
T Consensus 146 ~~~qgf------d-~-~srL~l~WE~aA~~~~--~~~r~~~iR~GvVlG~gGGa~~~M~--lpF~~g~GGPlGsG~Q~fp 213 (315)
T KOG3019|consen 146 IVHQGF------D-I-LSRLCLEWEGAALKAN--KDVRVALIRIGVVLGKGGGALAMMI--LPFQMGAGGPLGSGQQWFP 213 (315)
T ss_pred cccCCh------H-H-HHHHHHHHHHHhhccC--cceeEEEEEEeEEEecCCcchhhhh--hhhhhccCCcCCCCCeeee
Confidence 654431 1 2 1221 1122222221 2489999999999998643221111 12244555664 3789999
Q ss_pred ceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCC---CCCCCCCCC--CCCCCce-----ecchHH
Q 020266 230 WVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF---QLPEKCADD--KPHVPTY-----QVLKEK 298 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~---~~~~~~~~~--~~~~~~~-----~~~~~k 298 (328)
|||++|++..+..+++++...|+.|.+. +..+..|+.+++..+++.. ++|.+.... -+..... -.-+.|
T Consensus 214 WIHv~DL~~li~~ale~~~v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA~~vLeGqKV~Pqr 293 (315)
T KOG3019|consen 214 WIHVDDLVNLIYEALENPSVKGVINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERATVVLEGQKVLPQR 293 (315)
T ss_pred eeehHHHHHHHHHHHhcCCCCceecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccceeEEeeCCcccchh
Confidence 9999999999999999998899999885 8999999999999998742 344322111 1111112 234667
Q ss_pred HHhcCCc--cccHHHHHHHHH
Q 020266 299 VKNLGIE--FIPVEVSLKETI 317 (328)
Q Consensus 299 ~~~lg~~--~~~~~~~l~~~~ 317 (328)
+.++||+ .+.+.++|+++.
T Consensus 294 al~~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 294 ALELGFEFKYPYVKDALRAIM 314 (315)
T ss_pred HhhcCceeechHHHHHHHHHh
Confidence 7788998 556888888764
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-14 Score=110.20 Aligned_cols=165 Identities=15% Similarity=0.173 Sum_probs=121.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
.+.+||||||+..||..|+++|++.|.+|++.+|+.+....... ..+.+....+|+.|.++++++++
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~------~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P 77 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKA------ENPEIHTEVCDVADRDSRRELVEWLKKEYP 77 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHh------cCcchheeeecccchhhHHHHHHHHHhhCC
Confidence 46789999999999999999999999999999999876544222 23578888999999988777665
Q ss_pred CccEEEEccCCCCCCC-------CCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 GCDGVCHTASPFYHDA-------KDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~-------~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
..+++|||||.....+ .+...+-+++|+.++.+|..+..++ ....-+|.+||.-++- +.
T Consensus 78 ~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafv-Pm---------- 146 (245)
T COG3967 78 NLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFV-PM---------- 146 (245)
T ss_pred chheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccC-cc----------
Confidence 5799999999743221 1122355778999999998877654 1234699999943222 10
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHH---hcCccEEEEcCCcccCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK---EKSIDLVTINPAMVIGP 200 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~~~~~~ilRp~~v~G~ 200 (328)
+ ..-.|..+|.+...+..+++. ..++++.=+-|+.|-.+
T Consensus 147 ~-----------~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 147 A-----------STPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred c-----------ccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 0 012399999988877766654 34788888889988875
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-14 Score=149.27 Aligned_cols=171 Identities=19% Similarity=0.171 Sum_probs=130.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCCh----------------------------------------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDP---------------------------------------- 46 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~---------------------------------------- 46 (328)
+++++|||||+|.||..++++|+++ |++|++++|+....
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 4789999999999999999999998 69999999983100
Q ss_pred ----hhhhhhhh-ccCCCCcEEEEEccCCCcCchHHhhC------CccEEEEccCCCC-----CCCCCcchhhhhHHHHH
Q 020266 47 ----KKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKG 110 (328)
Q Consensus 47 ----~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~ 110 (328)
........ ......++.++.+|++|.+.+.++++ ++|+|||+||... ....+.+..++++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 00000000 01123468899999999998877765 4899999999733 22344567889999999
Q ss_pred HHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc-CccE
Q 020266 111 TLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-SIDL 189 (328)
Q Consensus 111 ~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-~~~~ 189 (328)
+.++++++... ..++||++||+++.+|.. ....|+.+|...+.+.+.++.++ ++++
T Consensus 2156 ~~~Ll~al~~~-~~~~IV~~SSvag~~G~~----------------------gqs~YaaAkaaL~~la~~la~~~~~irV 2212 (2582)
T TIGR02813 2156 LLSLLAALNAE-NIKLLALFSSAAGFYGNT----------------------GQSDYAMSNDILNKAALQLKALNPSAKV 2212 (2582)
T ss_pred HHHHHHHHHHh-CCCeEEEEechhhcCCCC----------------------CcHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 99999999876 557899999987776422 12449999999998888888775 6899
Q ss_pred EEEcCCcccCCC
Q 020266 190 VTINPAMVIGPL 201 (328)
Q Consensus 190 ~ilRp~~v~G~~ 201 (328)
+++.||.+-|+.
T Consensus 2213 ~sI~wG~wdtgm 2224 (2582)
T TIGR02813 2213 MSFNWGPWDGGM 2224 (2582)
T ss_pred EEEECCeecCCc
Confidence 999999887653
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=109.94 Aligned_cols=215 Identities=17% Similarity=0.097 Sum_probs=153.9
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEccC
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTAS 90 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a~ 90 (328)
..++.|+.||.|+++|+.-.+.|++|-++.|+..+.-. .. -...++++++|....+-......++..++-+++
T Consensus 54 ~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~~l-~s------w~~~vswh~gnsfssn~~k~~l~g~t~v~e~~g 126 (283)
T KOG4288|consen 54 WTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQTL-SS------WPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMG 126 (283)
T ss_pred HHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcchh-hC------CCcccchhhccccccCcchhhhcCCcccHHHhc
Confidence 58999999999999999999999999999998653211 11 134688899999877767777778888888887
Q ss_pred CCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhh
Q 020266 91 PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLS 170 (328)
Q Consensus 91 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 170 (328)
.+... .....+|-+...+-.+++.+. ++++|+|+|-. .+|-+.. ..+.|-.+
T Consensus 127 gfgn~-----~~m~~ing~ani~a~kaa~~~-gv~~fvyISa~--d~~~~~~--------------------i~rGY~~g 178 (283)
T KOG4288|consen 127 GFGNI-----ILMDRINGTANINAVKAAAKA-GVPRFVYISAH--DFGLPPL--------------------IPRGYIEG 178 (283)
T ss_pred Cccch-----HHHHHhccHhhHHHHHHHHHc-CCceEEEEEhh--hcCCCCc--------------------cchhhhcc
Confidence 65432 255667888888889999998 99999999984 3321100 11349999
Q ss_pred hHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC----c---chHHHHHHHH----hCCCCCCCCCccceeHHHHHHH
Q 020266 171 KTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL----N---TSAAAVLSLI----KGAQTYPNVTFGWVNVKDVANA 239 (328)
Q Consensus 171 K~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~----~---~~~~~~~~~~----~~~~~~~~~~~~~v~v~D~a~~ 239 (328)
|+++|.-+.+- ++.+-++||||.+||...-... . ....+..+.+ ...+..+......+.++++|.+
T Consensus 179 KR~AE~Ell~~---~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~a 255 (283)
T KOG4288|consen 179 KREAEAELLKK---FRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALA 255 (283)
T ss_pred chHHHHHHHHh---cCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHH
Confidence 99999877653 5688999999999997321111 1 1122222222 1125567778889999999999
Q ss_pred HHHhhcCCCCCCcEEEecCccCHHHHHHHHH
Q 020266 240 HIQAFEVPSANGRYCLVERVSHYSEIVNIIR 270 (328)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~ 270 (328)
.+.++.+|.-.|++ ++.|+.+...
T Consensus 256 al~ai~dp~f~Gvv-------~i~eI~~~a~ 279 (283)
T KOG4288|consen 256 ALKAIEDPDFKGVV-------TIEEIKKAAH 279 (283)
T ss_pred HHHhccCCCcCcee-------eHHHHHHHHH
Confidence 99999998766643 4555555443
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.1e-14 Score=117.52 Aligned_cols=170 Identities=14% Similarity=0.115 Sum_probs=131.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc----hHHhhC--Cc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS----FDSIVD--GC 82 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----~~~~~~--~~ 82 (328)
++=.+|||||..||++.+++|+++|.+|..++|+.++.+.+.+.+..... -++.++..|.++++. +.+.+. .+
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK-VEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC-cEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 35589999999999999999999999999999999999888777665543 568899999998775 333333 46
Q ss_pred cEEEEccCCCCCC-------CCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 83 DGVCHTASPFYHD-------AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 83 d~vih~a~~~~~~-------~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
-++|||+|...+. ........+.+|+.++..+.+.....+ +.+-+|++||.+..-+.
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~------------- 194 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPT------------- 194 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccC-------------
Confidence 7999999974422 121334778889999888887766542 44679999997544311
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPL 201 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~ 201 (328)
...+.|+.+|...+.+..++.+|+ |+.+..+-|..|-++.
T Consensus 195 ---------p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 195 ---------PLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccc
Confidence 124669999999999998888875 8999999999998864
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=115.47 Aligned_cols=212 Identities=22% Similarity=0.186 Sum_probs=132.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCch-HHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSF-DSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~-~~~~~---- 80 (328)
++++++|||+||||.+|+-+++.|+++|+.|+++.|+..+...+.. ......+..-+..|.....+. ..+.+
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~---~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~ 152 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG---VFFVDLGLQNVEADVVTAIDILKKLVEAVPK 152 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc---ccccccccceeeeccccccchhhhhhhhccc
Confidence 4567899999999999999999999999999999999887766433 111223455555555544332 23333
Q ss_pred CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020266 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 160 (328)
...+++-+++-.+... +. ..-..+...|++|+++||+.. +++|||++||++.-- .. ...++...
T Consensus 153 ~~~~v~~~~ggrp~~e-d~-~~p~~VD~~g~knlvdA~~~a-Gvk~~vlv~si~~~~-~~----~~~~~~~~-------- 216 (411)
T KOG1203|consen 153 GVVIVIKGAGGRPEEE-DI-VTPEKVDYEGTKNLVDACKKA-GVKRVVLVGSIGGTK-FN----QPPNILLL-------- 216 (411)
T ss_pred cceeEEecccCCCCcc-cC-CCcceecHHHHHHHHHHHHHh-CCceEEEEEeecCcc-cC----CCchhhhh--------
Confidence 2346666665433321 11 122356789999999999998 999999999864221 00 00000000
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC-CC-CCCCccceeHHHHHH
Q 020266 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TY-PNVTFGWVNVKDVAN 238 (328)
Q Consensus 161 ~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~v~v~D~a~ 238 (328)
.-.+-.+|+.+|.++. +.|++.+||||+...-....... ......+ .+ ++..--.+.-.|+|+
T Consensus 217 ---~~~~~~~k~~~e~~~~----~Sgl~ytiIR~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~r~~vae 281 (411)
T KOG1203|consen 217 ---NGLVLKAKLKAEKFLQ----DSGLPYTIIRPGGLEQDTGGQRE--------VVVDDEKELLTVDGGAYSISRLDVAE 281 (411)
T ss_pred ---hhhhhHHHHhHHHHHH----hcCCCcEEEeccccccCCCCcce--------ecccCccccccccccceeeehhhHHH
Confidence 0114477777777774 57999999999987653211100 0001111 01 111113678889999
Q ss_pred HHHHhhcCCCCCC
Q 020266 239 AHIQAFEVPSANG 251 (328)
Q Consensus 239 ~~~~~~~~~~~~g 251 (328)
.++.++.+....+
T Consensus 282 l~~~all~~~~~~ 294 (411)
T KOG1203|consen 282 LVAKALLNEAATF 294 (411)
T ss_pred HHHHHHhhhhhcc
Confidence 9999998876655
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=107.77 Aligned_cols=209 Identities=18% Similarity=0.101 Sum_probs=140.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEe--cCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASV--RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+.+.+||||++..||..++..+.+.+.+..... |.....+. +.-.. ........+|++....+.++.+
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~~~~---L~v~~--gd~~v~~~g~~~e~~~l~al~e~~r~k 79 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAELEG---LKVAY--GDDFVHVVGDITEEQLLGALREAPRKK 79 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcccccccc---eEEEe--cCCcceechHHHHHHHHHHHHhhhhhc
Confidence 467799999999999999999999886654444 43333222 11111 1234445566666554444443
Q ss_pred --CccEEEEccCCCC--------CCCCCcchhhhhHHHHHHHHHHHHHhcC-CC---ccEEEEecchhhhccCCCCCCCC
Q 020266 81 --GCDGVCHTASPFY--------HDAKDPQVELLDPAVKGTLNVLNSCAKF-PS---IKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 --~~d~vih~a~~~~--------~~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~---~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
.-|+||||||... ..+.+.|..+++.|+.+..-|...+.+. .+ .+.+|++||.+++-...
T Consensus 80 ~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~------ 153 (253)
T KOG1204|consen 80 GGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFS------ 153 (253)
T ss_pred CCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhcccc------
Confidence 4699999999632 2345568899999999988888776553 12 36799999977665211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCC----C--CCcchHHHHHHHHh
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQ----P--TLNTSAAAVLSLIK 218 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~----~--~~~~~~~~~~~~~~ 218 (328)
.+..|+.+|++-+.+.+..+.+. ++++..++||.+-.+.+. . -.+-...+++....
T Consensus 154 ----------------~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~ 217 (253)
T KOG1204|consen 154 ----------------SWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKE 217 (253)
T ss_pred ----------------HHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHh
Confidence 35669999999999999998764 899999999998776321 1 11112344444444
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCC-CCCC
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVP-SANG 251 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~-~~~g 251 (328)
.. .+++..+.++.+..++++. ...|
T Consensus 218 ~~--------~ll~~~~~a~~l~~L~e~~~f~sG 243 (253)
T KOG1204|consen 218 SG--------QLLDPQVTAKVLAKLLEKGDFVSG 243 (253)
T ss_pred cC--------CcCChhhHHHHHHHHHHhcCcccc
Confidence 32 4778888999998888875 3444
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=104.34 Aligned_cols=217 Identities=21% Similarity=0.235 Sum_probs=153.7
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|+-..+.|+-..+||||...+|++.++.|...|..|+.++...++-....+.+ ..++.|.+.|++++++++.++.
T Consensus 1 ~sa~rs~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel-----g~~~vf~padvtsekdv~aala 75 (260)
T KOG1199|consen 1 MSALRSTKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL-----GGKVVFTPADVTSEKDVRAALA 75 (260)
T ss_pred CchhhhhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh-----CCceEEeccccCcHHHHHHHHH
Confidence 33444556778899999999999999999999999999999887766655543 4688999999999999888775
Q ss_pred -------CccEEEEccCCCCC-----------CCCCcchhhhhHHHHHHHHHHHHHhcC---------CCccEEEEecch
Q 020266 81 -------GCDGVCHTASPFYH-----------DAKDPQVELLDPAVKGTLNVLNSCAKF---------PSIKRVVLTSSM 133 (328)
Q Consensus 81 -------~~d~vih~a~~~~~-----------~~~~~~~~~~~~N~~~~~~l~~~~~~~---------~~~~~~v~~SS~ 133 (328)
+.|..+||||.... -.-+....++++|+.||.|+++.-... +..+-+|...|.
T Consensus 76 ~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasv 155 (260)
T KOG1199|consen 76 KAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASV 155 (260)
T ss_pred HHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeecee
Confidence 57999999986110 112234477889999999998754322 122357778887
Q ss_pred hhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchH
Q 020266 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSA 210 (328)
Q Consensus 134 ~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~ 210 (328)
+++-|+- ....|+.||.+.-.+..-.+++. |+++..+-||.+-.|-. ..++
T Consensus 156 aafdgq~----------------------gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpll----sslp 209 (260)
T KOG1199|consen 156 AAFDGQT----------------------GQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLL----SSLP 209 (260)
T ss_pred eeecCcc----------------------chhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhh----hhhh
Confidence 6655421 23559999987666655555543 89999999997666642 2234
Q ss_pred HHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCC
Q 020266 211 AAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251 (328)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g 251 (328)
.-++..+...-.+|. .+-|+.+-+..+...++++-.+|
T Consensus 210 ekv~~fla~~ipfps---rlg~p~eyahlvqaiienp~lng 247 (260)
T KOG1199|consen 210 EKVKSFLAQLIPFPS---RLGHPHEYAHLVQAIIENPYLNG 247 (260)
T ss_pred HHHHHHHHHhCCCch---hcCChHHHHHHHHHHHhCcccCC
Confidence 445555554422232 24577788888888899987777
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-12 Score=98.75 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=116.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
.|+||+.+|.||||-.|+.|++.+++.+ -.|+++.|.+..... -...+.....|....+++...++++|
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a---------t~k~v~q~~vDf~Kl~~~a~~~qg~d 85 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA---------TDKVVAQVEVDFSKLSQLATNEQGPD 85 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc---------ccceeeeEEechHHHHHHHhhhcCCc
Confidence 4678999999999999999999999987 479888886422211 12356667778877777777788999
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
+.|.+-|....-.. .+..+.+.-.-...+.+++++. ++++|+.+||.++.-. .
T Consensus 86 V~FcaLgTTRgkaG--adgfykvDhDyvl~~A~~AKe~-Gck~fvLvSS~GAd~s------------------------S 138 (238)
T KOG4039|consen 86 VLFCALGTTRGKAG--ADGFYKVDHDYVLQLAQAAKEK-GCKTFVLVSSAGADPS------------------------S 138 (238)
T ss_pred eEEEeecccccccc--cCceEeechHHHHHHHHHHHhC-CCeEEEEEeccCCCcc------------------------c
Confidence 99988775432221 1245566666777888999997 9999999999653210 1
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCC
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL 202 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~ 202 (328)
...|-..|...|.-+.++-- -+++|+|||.+.|...
T Consensus 139 rFlY~k~KGEvE~~v~eL~F---~~~~i~RPG~ll~~R~ 174 (238)
T KOG4039|consen 139 RFLYMKMKGEVERDVIELDF---KHIIILRPGPLLGERT 174 (238)
T ss_pred ceeeeeccchhhhhhhhccc---cEEEEecCcceecccc
Confidence 13499999999988866532 3789999999999754
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-11 Score=95.87 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=83.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+.+++.|.+.|++|++.+|+.+........... ...++.++.+|+++++++.++++
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITN--LGGEALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999976544332222221 12457788999999988776553
Q ss_pred -CccEEEEccCCCCC---CCCCcchhhhhHHHHHHHHHHH----HHhcC------CCccEEEEecchhhhc
Q 020266 81 -GCDGVCHTASPFYH---DAKDPQVELLDPAVKGTLNVLN----SCAKF------PSIKRVVLTSSMAAVL 137 (328)
Q Consensus 81 -~~d~vih~a~~~~~---~~~~~~~~~~~~N~~~~~~l~~----~~~~~------~~~~~~v~~SS~~~~~ 137 (328)
++|++|||||.... ............|+.++....+ ...+. ...+||-.+||.++.+
T Consensus 92 G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T PRK06720 92 SRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQSF 162 (169)
T ss_pred CCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccccc
Confidence 68999999986321 1110111111334444333333 32222 1346888888876544
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8e-11 Score=103.09 Aligned_cols=181 Identities=15% Similarity=0.037 Sum_probs=120.8
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
+..+|++|.|+|++|.||+.++..|+.++ .++..+++.......+. +. .. .. .....+.+|+.++.+.++++
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~D-l~-~~--~~--~~~v~~~td~~~~~~~l~ga 77 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAAD-LS-HI--DT--PAKVTGYADGELWEKALRGA 77 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccc-hh-hc--Cc--CceEEEecCCCchHHHhCCC
Confidence 44568899999999999999999998655 68999998432222211 10 00 11 23345667767767788999
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 162 (328)
|+||++||...... ....+.+..|+..+.+++++++++ +++++|.++|-.+..... .... .+.+.....+
T Consensus 78 DvVVitaG~~~~~~-~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~~--~~~~-~~~~~sg~p~----- 147 (321)
T PTZ00325 78 DLVLICAGVPRKPG-MTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTVP--IAAE-TLKKAGVYDP----- 147 (321)
T ss_pred CEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHH--HHHh-hhhhccCCCh-----
Confidence 99999999854332 234588999999999999999998 888999999943221000 0000 0112111121
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCC
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQ 203 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~ 203 (328)
...||.+-+..-++-...++..++....++ +.|+|...+
T Consensus 148 -~~viG~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 148 -RKLFGVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred -hheeechhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence 244777756666777777778888888888 778887544
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-10 Score=92.27 Aligned_cols=103 Identities=12% Similarity=0.147 Sum_probs=77.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC-------c
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG-------C 82 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~ 82 (328)
|+++|||||||+|. +++.|.+.|++|++.+|++++...+.... ....++.++.+|++|++++.+++++ +
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l---~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~i 76 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRES---TTPESITPLPLDYHDDDALKLAIKSTIEKNGPF 76 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHh---hcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 47999999998876 99999999999999999765544332222 1134788899999999998887763 4
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCcc----EEEEecchh
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK----RVVLTSSMA 134 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~----~~v~~SS~~ 134 (328)
|.+|+. +.+.++.++..+|++. +++ +|||+=.+.
T Consensus 77 d~lv~~-----------------vh~~~~~~~~~~~~~~-gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 77 DLAVAW-----------------IHSSAKDALSVVCREL-DGSSETYRLFHVLGSA 114 (177)
T ss_pred eEEEEe-----------------ccccchhhHHHHHHHH-ccCCCCceEEEEeCCc
Confidence 555543 3345678999999998 777 899987643
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=96.20 Aligned_cols=175 Identities=17% Similarity=0.108 Sum_probs=118.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.+||.|+|++|.||+.++..|+.++ .++..+++++.....+ .+... .......++++.+++.+.++++|+||
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~-Dl~~~-----~~~~~i~~~~~~~d~~~~l~~aDiVV 91 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAA-DVSHI-----NTPAQVRGFLGDDQLGDALKGADLVI 91 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEc-hhhhC-----CcCceEEEEeCCCCHHHHcCCCCEEE
Confidence 5689999999999999999998766 4899999877222111 11000 11112335555567888899999999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
|+||...... ....+.+..|+..++++.+.+.++ +...+|+++|=-+.. .. +. -...+.......| ...
T Consensus 92 itAG~~~~~g-~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD~-~~-~i-~t~~~~~~s~~p~------~~v 160 (323)
T PLN00106 92 IPAGVPRKPG-MTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVNS-TV-PI-AAEVLKKAGVYDP------KKL 160 (323)
T ss_pred EeCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCccc-cH-HH-HHHHHHHcCCCCc------ceE
Confidence 9999854432 334588999999999999999998 677888888832110 00 00 0001111111111 255
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~ 201 (328)
||.+++..+++-..++++.+++...++ +.|+|..
T Consensus 161 iG~~~LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeH 194 (323)
T PLN00106 161 FGVTTLDVVRANTFVAEKKGLDPADVD-VPVVGGH 194 (323)
T ss_pred EEEecchHHHHHHHHHHHhCCChhheE-EEEEEeC
Confidence 999999999999999999999888874 4466654
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=86.70 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=119.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-----eEEEEecCCCChhhhhhhhhccCC--CCcEEEEEccCCCcCchHHhh-
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-----TVKASVRDPNDPKKTRHLLALDGA--SERLQLFKANLLEEGSFDSIV- 79 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~- 79 (328)
+.|.++|||++..||-+||.+|++... ++....|+.++.+..-+.+..... ...++++..|+++-.++.++.
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~ 81 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK 81 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence 356789999999999999999998643 466678988887775555444433 346788999999877655544
Q ss_pred ------CCccEEEEccCCCCCC--------------------------------CCCcchhhhhHHHHHHHHHHHHHhcC
Q 020266 80 ------DGCDGVCHTASPFYHD--------------------------------AKDPQVELLDPAVKGTLNVLNSCAKF 121 (328)
Q Consensus 80 ------~~~d~vih~a~~~~~~--------------------------------~~~~~~~~~~~N~~~~~~l~~~~~~~ 121 (328)
+..|.|+-|||..... ..+....++++|+.|-..++....+.
T Consensus 82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl 161 (341)
T KOG1478|consen 82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL 161 (341)
T ss_pred HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence 4679999999742211 12334478899999988887765543
Q ss_pred ---CCccEEEEecchhhhccCCCCCCCCcccc-CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcC
Q 020266 122 ---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD-ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINP 194 (328)
Q Consensus 122 ---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp 194 (328)
....++|.+||..+-- ..+. ||-. ... ..-+|..||.+.+.+-...-+.. |+.-.++.|
T Consensus 162 l~~~~~~~lvwtSS~~a~k---------k~lsleD~q-~~k----g~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~p 227 (341)
T KOG1478|consen 162 LCHSDNPQLVWTSSRMARK---------KNLSLEDFQ-HSK----GKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQP 227 (341)
T ss_pred hhcCCCCeEEEEeeccccc---------ccCCHHHHh-hhc----CCCCcchhHHHHHHHHHHHhccccccchhhhcccC
Confidence 2334899999964321 1121 2211 100 11349999999988776665543 566667777
Q ss_pred CcccCC
Q 020266 195 AMVIGP 200 (328)
Q Consensus 195 ~~v~G~ 200 (328)
|.....
T Consensus 228 g~~tt~ 233 (341)
T KOG1478|consen 228 GIFTTN 233 (341)
T ss_pred ceeecc
Confidence 765544
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=90.12 Aligned_cols=174 Identities=15% Similarity=0.093 Sum_probs=102.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-------CeEEEEecCCCC--hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-------YTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
..+|+||||+|+||++++..|+..+ .+|+++++++.. .+.....+ . .......+|+....++.+.+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl--~---d~~~~~~~~~~~~~~~~~~l 76 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMEL--Q---DCAFPLLKSVVATTDPEEAF 76 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeeh--h---hccccccCCceecCCHHHHh
Confidence 4579999999999999999999854 589999996532 21100000 0 00001223555556777888
Q ss_pred CCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020266 80 DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (328)
Q Consensus 80 ~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 158 (328)
+++|+|||+||......... .+.++.|+.-.+.+.....++. ....+|.+|.-.-+. ....-+..+..|.
T Consensus 77 ~~aDiVI~tAG~~~~~~~~R-~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~--------t~~~~k~~~~~~~ 147 (325)
T cd01336 77 KDVDVAILVGAMPRKEGMER-KDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTN--------ALILLKYAPSIPK 147 (325)
T ss_pred CCCCEEEEeCCcCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHH--------HHHHHHHcCCCCH
Confidence 99999999999865433333 4889999999999998888873 233466666521110 0011111100110
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC
Q 020266 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (328)
Q Consensus 159 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~ 201 (328)
...-..+.+..-++-...++..+++...++-..|+|..
T Consensus 148 -----~~ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeH 185 (325)
T cd01336 148 -----ENFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNH 185 (325)
T ss_pred -----HHEEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcC
Confidence 00111223333444455556667777777777777864
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-09 Score=93.28 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=68.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
||+|+|.|| |+||+.++..|+++| .+|++.+|+.+++.+..... .++++..+.|+.|.+.+.+++++.|+|||
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHHHhcCCEEEE
Confidence 578999998 999999999999998 99999999988877644331 24799999999999999999999999999
Q ss_pred ccCC
Q 020266 88 TASP 91 (328)
Q Consensus 88 ~a~~ 91 (328)
++.+
T Consensus 75 ~~p~ 78 (389)
T COG1748 75 AAPP 78 (389)
T ss_pred eCCc
Confidence 9865
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-07 Score=80.94 Aligned_cols=81 Identities=11% Similarity=0.052 Sum_probs=60.3
Q ss_pred CCeEEEECCccHHHHH--HHHHHHHCCCeEEEEecCCCChh------------hhhhhhhccCCCCcEEEEEccCCCcCc
Q 020266 9 GKVVCVTGASGYIASW--LVKLLLSRGYTVKASVRDPNDPK------------KTRHLLALDGASERLQLFKANLLEEGS 74 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 74 (328)
+|++||||+++.+|.+ +++.| +.|.+|+++.+..+... ......... ...+..+.+|+++++.
T Consensus 41 gK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~--G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 41 PKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAA--GLYAKSINGDAFSDEI 117 (398)
T ss_pred CCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 6899999999999999 89999 99999999886432211 122222211 2346788999999988
Q ss_pred hHHhhC-------CccEEEEccCCC
Q 020266 75 FDSIVD-------GCDGVCHTASPF 92 (328)
Q Consensus 75 ~~~~~~-------~~d~vih~a~~~ 92 (328)
+.++++ ++|+|||++|..
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccC
Confidence 776665 589999999864
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.9e-07 Score=72.53 Aligned_cols=210 Identities=13% Similarity=0.094 Sum_probs=134.9
Q ss_pred cCCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|++||+|-. .-|+..+++.|.+.|.++......+.-.++.+.+....+ ....++||+++.+++.+++.
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~---s~~v~~cDV~~d~~i~~~f~~i~ 79 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELG---SDLVLPCDVTNDESIDALFATIK 79 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhcc---CCeEEecCCCCHHHHHHHHHHHH
Confidence 4579999999864 679999999999999999999887644444444433322 35578999999998888775
Q ss_pred ----CccEEEEccCCCC---------CCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCC
Q 020266 81 ----GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ----~~d~vih~a~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
..|.+||+.|..+ +...+.+...+++-.-+...|.+++++.+. ...+|.++= +|..
T Consensus 80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtY----lgs~------ 149 (259)
T COG0623 80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTY----LGSE------ 149 (259)
T ss_pred HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEe----ccce------
Confidence 5799999987533 222334445556666677777888877632 234444332 2110
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
.. .++.+.-+..|.+-|.-++-.+.+. |+++..+--|.+=.-.... ...+..++......-|
T Consensus 150 -----r~-------vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasg-I~~f~~~l~~~e~~aP-- 214 (259)
T COG0623 150 -----RV-------VPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASG-IGDFRKMLKENEANAP-- 214 (259)
T ss_pred -----ee-------cCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhc-cccHHHHHHHHHhhCC--
Confidence 00 0134678999999999999988865 6777777766553211111 1112233333222222
Q ss_pred CCCCccceeHHHHHHHHHHhhcC
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
.+.-+.++||...-..++..
T Consensus 215 ---l~r~vt~eeVG~tA~fLlSd 234 (259)
T COG0623 215 ---LRRNVTIEEVGNTAAFLLSD 234 (259)
T ss_pred ---ccCCCCHHHhhhhHHHHhcc
Confidence 33456789999988888775
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-08 Score=84.61 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=54.8
Q ss_pred CCCCeEEEECCc----------------cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC
Q 020266 7 AAGKVVCVTGAS----------------GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70 (328)
Q Consensus 7 ~~~~~vlVtGat----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (328)
+++|+||||+|. ||+|++|+++|+++|++|+++++....... .. .....+..+.+|..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~--~~----~~~~~~~~V~s~~d 74 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN--DI----NNQLELHPFEGIID 74 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc--cc----CCceeEEEEecHHH
Confidence 368999999885 999999999999999999998864221110 00 00123445566333
Q ss_pred CcCchHHhhC--CccEEEEccCC
Q 020266 71 EEGSFDSIVD--GCDGVCHTASP 91 (328)
Q Consensus 71 ~~~~~~~~~~--~~d~vih~a~~ 91 (328)
..+.+.++++ ++|+|||+||.
T Consensus 75 ~~~~l~~~~~~~~~D~VIH~AAv 97 (229)
T PRK09620 75 LQDKMKSIITHEKVDAVIMAAAG 97 (229)
T ss_pred HHHHHHHHhcccCCCEEEECccc
Confidence 2346777774 68999999997
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.5e-08 Score=84.20 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=113.9
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-------eEEEEecCCCC--hhhhhhhhhc-c-CCCCcEEEEEccCCCcCchH
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRDPND--PKKTRHLLAL-D-GASERLQLFKANLLEEGSFD 76 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~-~-~~~~~~~~~~~Dl~~~~~~~ 76 (328)
+.++|.|+|++|.+|..++..|+..|. ++..+++.+.. .......+.. . ....++.. + ....
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-----~--~~~~ 73 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI-----T--DDPN 73 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE-----e--cCcH
Confidence 356899999999999999999998773 78888884432 2222111111 0 00112222 1 1224
Q ss_pred HhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCCccccCCC-C
Q 020266 77 SIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETW-F 154 (328)
Q Consensus 77 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~-~ 154 (328)
+.++++|+||.+||........ ..+.++.|+.-.+.+.....++.. ...+|.+|--.-+. ......... +
T Consensus 74 ~~~~daDivvitaG~~~k~g~t-R~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~-------t~~~~k~sg~~ 145 (322)
T cd01338 74 VAFKDADWALLVGAKPRGPGME-RADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTN-------ALIAMKNAPDI 145 (322)
T ss_pred HHhCCCCEEEEeCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHH-------HHHHHHHcCCC
Confidence 5567899999999975443333 347889999999999999988742 44566666421110 000111110 1
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCC
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL 202 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~ 202 (328)
+ +...||.+++..+++...+++..+++...+|...|+|+..
T Consensus 146 p-------~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG 186 (322)
T cd01338 146 P-------PDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS 186 (322)
T ss_pred C-------hHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc
Confidence 1 1245999999999999999999999999999999999873
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-07 Score=79.79 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCC--cCchHHhhCCccEEEEccCCCC
Q 020266 16 GASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE--EGSFDSIVDGCDGVCHTASPFY 93 (328)
Q Consensus 16 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~d~vih~a~~~~ 93 (328)
.+|||+|++|+++|+++|++|+++.|....... ...++.++..+..+ .+.+.+.++++|+|||+||...
T Consensus 23 ~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~~---------~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd 93 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAGHEVTLVTTKTAVKPE---------PHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD 93 (229)
T ss_pred ccchHHHHHHHHHHHhCCCEEEEEECcccccCC---------CCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence 568999999999999999999999875421110 01346666544322 2345566678999999999753
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=77.98 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=63.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+++++++|+||+|.+|+.+++.|.+.|++|+++.|+.++...+...+... .+......|..+.+++.+.++++|+||
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRAR---FGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhh---cCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 45789999999999999999999999999999999866554443332211 134455678888888888899999999
Q ss_pred EccC
Q 020266 87 HTAS 90 (328)
Q Consensus 87 h~a~ 90 (328)
++.+
T Consensus 103 ~at~ 106 (194)
T cd01078 103 AAGA 106 (194)
T ss_pred ECCC
Confidence 9764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.7e-07 Score=77.94 Aligned_cols=174 Identities=17% Similarity=0.097 Sum_probs=101.7
Q ss_pred CeEEEECCccHHHHHHHHHHHH---CCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLS---RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|+|+|+||||.+|++++..|.. .++++.+++|++. .......+.. .+....+.+ ++.+++.+.++++|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~---~~~~~~i~~--~~~~d~~~~l~~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSH---IPTAVKIKG--FSGEDPTPALEGADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Ccceehhhhc---CCCCceEEE--eCCCCHHHHcCCCCEEE
Confidence 5899999999999999988854 2468888888643 2111100100 011122333 33455566778899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
.++|........ ..+.+..|...+..+++++.++ +.+++|.+.| .-+-- ...............+.. ..
T Consensus 75 itaG~~~~~~~~-R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvs-NP~D~-~t~~~~~~~~~~sg~p~~-------rv 143 (312)
T PRK05086 75 ISAGVARKPGMD-RSDLFNVNAGIVKNLVEKVAKT-CPKACIGIIT-NPVNT-TVAIAAEVLKKAGVYDKN-------KL 143 (312)
T ss_pred EcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcc-CchHH-HHHHHHHHHHHhcCCCHH-------HE
Confidence 999985443332 3488899999999999999998 7778888877 21100 000000000011111110 11
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~ 201 (328)
.|.+-+..-++....++..+++..-++ +.|+|..
T Consensus 144 ig~~~Lds~R~~~~ia~~l~~~~~~v~-~~v~GeH 177 (312)
T PRK05086 144 FGVTTLDVIRSETFVAELKGKQPGEVE-VPVIGGH 177 (312)
T ss_pred EeeecHHHHHHHHHHHHHhCCChhheE-EEEEEec
Confidence 333323334555555666677777776 7778875
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.9e-07 Score=78.82 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=97.6
Q ss_pred eEEEECCccHHHHHHHHHHHHCC-------CeEEEEecCC--CChhhhhhhhhccCCCCcEEEEEccCCCc---------
Q 020266 11 VVCVTGASGYIASWLVKLLLSRG-------YTVKASVRDP--NDPKKTRHLLALDGASERLQLFKANLLEE--------- 72 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--------- 72 (328)
+|.|+||+|.+|+.++..|+..| ++++.+++++ +..+ ....|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~----------------g~~~Dl~d~~~~~~~~~~ 65 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALE----------------GVVMELQDCAFPLLKGVV 65 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccc----------------eeeeehhhhcccccCCcE
Confidence 69999999999999999998765 2588888876 3222 222233222
Q ss_pred --CchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccc
Q 020266 73 --GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 73 --~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
....+.++++|+|||+||........ ..+.+..|+.-.+.+.....+.. ....+|.+|--.-+. .....
T Consensus 66 i~~~~~~~~~~aDiVVitAG~~~~~g~t-R~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~-------t~~~~ 137 (323)
T cd00704 66 ITTDPEEAFKDVDVAILVGAFPRKPGME-RADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTN-------ALIAL 137 (323)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCcCCc-HHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHH-------HHHHH
Confidence 24557788999999999975443333 34888999999999999998873 344566665421110 00011
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~ 201 (328)
.......+ ....+.+.+..-++-...++..+++..-+.-..|+|..
T Consensus 138 k~sg~~p~------~~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH 183 (323)
T cd00704 138 KNAPNLPP------KNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNH 183 (323)
T ss_pred HHcCCCCH------HHEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecc
Confidence 11110000 01123455555555555566666665555555577764
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-06 Score=75.36 Aligned_cols=164 Identities=15% Similarity=0.083 Sum_probs=98.5
Q ss_pred eEEEECCccHHHHHHHHHHHHCCC-------eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcC----------
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGY-------TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG---------- 73 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---------- 73 (328)
+|.|+|++|.+|+.++..|...|. +++.+++.+.... .+....|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~--------------a~g~~~Dl~d~~~~~~~~~~~~ 66 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKV--------------LEGVVMELMDCAFPLLDGVVPT 66 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccc--------------cceeEeehhcccchhcCceecc
Confidence 589999999999999999987552 5888888654311 122233333332
Q ss_pred -chHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 74 -SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 74 -~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
+..+.+.++|+|||+||...... ....+.++.|+.-.+.+.+...++. ....+|.+|--.-+.. ......
T Consensus 67 ~~~~~~~~~aDiVVitAG~~~~~~-~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t-------~v~~~~ 138 (324)
T TIGR01758 67 HDPAVAFTDVDVAILVGAFPRKEG-MERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNA-------LVLSNY 138 (324)
T ss_pred CChHHHhCCCCEEEEcCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHH-------HHHHHH
Confidence 33567788999999999754432 2345889999999999999998873 3445666664211100 000001
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL 202 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~ 202 (328)
...+.+ ...=..+.+..-++-...++..+++...++-..|+|...
T Consensus 139 sg~~~~------~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG 183 (324)
T TIGR01758 139 APSIPP------KNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHS 183 (324)
T ss_pred cCCCCc------ceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCC
Confidence 100000 011112233334555555666788877777777888643
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.3e-06 Score=66.23 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=77.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
|||.|+|++|.+|++++-.|...+ .++..+++++...+.....+... .......... .+ .+.++++|+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~----~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GD----YEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SS----GGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---cc----ccccccccEE
Confidence 579999999999999999999986 68999999866554433222111 1111222222 22 2345689999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|-+||........ ..+.++.|..-.+.+.+...+......+|.+|-
T Consensus 74 vitag~~~~~g~s-R~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN 119 (141)
T PF00056_consen 74 VITAGVPRKPGMS-RLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN 119 (141)
T ss_dssp EETTSTSSSTTSS-HHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred EEecccccccccc-HHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC
Confidence 9999975443333 348889999999999999888743345666654
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.4e-07 Score=75.38 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=68.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 87 (328)
|+|||+||||. |+.|++.|.+.|++|++..++......+.. .+...+..+..|.+++.+.++ ++|+||+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~--------~g~~~v~~g~l~~~~l~~~l~~~~i~~VID 71 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI--------HQALTVHTGALDPQELREFLKRHSIDILVD 71 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc--------cCCceEEECCCCHHHHHHHHHhcCCCEEEE
Confidence 57999999999 999999999999999999998765433221 122344556667777877776 5999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccE
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~ 126 (328)
++.++. ...+.++.++|++. +..-
T Consensus 72 AtHPfA--------------~~is~~a~~a~~~~-~ipy 95 (256)
T TIGR00715 72 ATHPFA--------------AQITTNATAVCKEL-GIPY 95 (256)
T ss_pred cCCHHH--------------HHHHHHHHHHHHHh-CCcE
Confidence 886522 23467888888887 6653
|
This enzyme was found to be a monomer by gel filtration. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.2e-07 Score=82.33 Aligned_cols=76 Identities=29% Similarity=0.579 Sum_probs=59.9
Q ss_pred EEEECCccHHHHHHHHHHHHCC-C-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 12 VCVTGASGYIASWLVKLLLSRG-Y-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|.|| |++|+.+++.|++++ + +|++.+|+.++.+.+.... ...++++++.|+.|++++.++++++|+||||+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 799999 999999999999986 4 8999999988766644322 24689999999999999999999999999999
Q ss_pred CCC
Q 020266 90 SPF 92 (328)
Q Consensus 90 ~~~ 92 (328)
++.
T Consensus 76 gp~ 78 (386)
T PF03435_consen 76 GPF 78 (386)
T ss_dssp SGG
T ss_pred ccc
Confidence 863
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.1e-07 Score=80.79 Aligned_cols=73 Identities=21% Similarity=0.114 Sum_probs=57.2
Q ss_pred CCCCeEEEECC----------------ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC
Q 020266 7 AAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70 (328)
Q Consensus 7 ~~~~~vlVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (328)
+++|+|+|||| +|.+|.+++++|.++|++|++++++... .. ... ....|++
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~-~~----------~~~--~~~~dv~ 252 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNL-PT----------PAG--VKRIDVE 252 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccc-cC----------CCC--cEEEccC
Confidence 57899999999 9999999999999999999999886521 10 012 2356888
Q ss_pred CcCchHHhhC----CccEEEEccCCC
Q 020266 71 EEGSFDSIVD----GCDGVCHTASPF 92 (328)
Q Consensus 71 ~~~~~~~~~~----~~d~vih~a~~~ 92 (328)
+.+++.+.++ .+|++||+||..
T Consensus 253 ~~~~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 253 SAQEMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred CHHHHHHHHHHhcCCCCEEEEccccc
Confidence 8777666653 689999999973
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.5e-07 Score=77.80 Aligned_cols=74 Identities=23% Similarity=0.215 Sum_probs=54.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHC-C-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSR-G-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
.+++|+|+||||+|+||+.+++.|+++ | .+++++.|+..+...+...+ ..+|+. ++.+.+.++|
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el-----------~~~~i~---~l~~~l~~aD 217 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAEL-----------GGGKIL---SLEEALPEAD 217 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHh-----------ccccHH---hHHHHHccCC
Confidence 356899999999999999999999865 5 68999998766544433221 123443 3567788999
Q ss_pred EEEEccCCCC
Q 020266 84 GVCHTASPFY 93 (328)
Q Consensus 84 ~vih~a~~~~ 93 (328)
+|||+++...
T Consensus 218 iVv~~ts~~~ 227 (340)
T PRK14982 218 IVVWVASMPK 227 (340)
T ss_pred EEEECCcCCc
Confidence 9999998644
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-06 Score=75.86 Aligned_cols=83 Identities=17% Similarity=0.299 Sum_probs=67.0
Q ss_pred eEEEECCccHHHHHHHHHHHH----CCCeEEEEecCCCChhhhhhhhhccCC--CCcEEEEEccCCCcCchHHhhCCccE
Q 020266 11 VVCVTGASGYIASWLVKLLLS----RGYTVKASVRDPNDPKKTRHLLALDGA--SERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
-++|.|||||.|..+++++.. .|....+.+|++++.....+....... -++..++.+|..|++++.+..+.+-+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~v 86 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARV 86 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEE
Confidence 389999999999999999999 678889999999887664443332221 12334888999999999999999999
Q ss_pred EEEccCCCC
Q 020266 85 VCHTASPFY 93 (328)
Q Consensus 85 vih~a~~~~ 93 (328)
|+||+|+..
T Consensus 87 ivN~vGPyR 95 (423)
T KOG2733|consen 87 IVNCVGPYR 95 (423)
T ss_pred EEeccccce
Confidence 999999854
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-06 Score=74.24 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=61.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCe-EEEEecCC---CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDP---NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
+++|+++|+|| |.+|++++..|++.|+. |.++.|+. ++...+...+... ..++.....|+.+.+++.+.++.+
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~--~~~~~~~~~d~~~~~~~~~~~~~~ 200 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE--VPECIVNVYDLNDTEKLKAEIASS 200 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc--CCCceeEEechhhhhHHHhhhccC
Confidence 45789999998 89999999999999986 99999986 3333333332211 134456678888877788888889
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+|||+...
T Consensus 201 DilINaTp~ 209 (289)
T PRK12548 201 DILVNATLV 209 (289)
T ss_pred CEEEEeCCC
Confidence 999998754
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.8e-05 Score=69.65 Aligned_cols=117 Identities=19% Similarity=0.149 Sum_probs=75.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCC--CChhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDP--NDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~--~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
|+|.|+|+||.+|..++..|+..|+ +|++++|.+ +........+... ..+... .++-..+.. .+.++|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-----~i~~~~d~~-~l~~aD 74 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-----EIKISSDLS-DVAGSD 74 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCc-----EEEECCCHH-HhCCCC
Confidence 5799999999999999999999985 599999954 3322211111100 000011 111112233 478899
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
+||-++|....... ...+.++.|+.-...+.+...+......+|.+++.
T Consensus 75 iViitag~p~~~~~-~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 75 IVIITAGVPRKEGM-SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred EEEEecCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 99999987543322 22377888999999999988776344467777773
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.1e-05 Score=66.45 Aligned_cols=116 Identities=12% Similarity=0.107 Sum_probs=79.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
.++||.|+|+ |.+|+.++-.|+..|. ++..++++.+..+.....+... ....++....+ +++ .++++|+
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~------~~~-~~~~adi 76 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAG------DYS-DCKDADL 76 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeC------CHH-HhCCCCE
Confidence 3678999998 9999999999998885 7999999877665543333211 11123333222 233 4688999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
||-+||......... .+.++.|+.-.+.+++.+.+......+|.+|-
T Consensus 77 vIitag~~~k~g~~R-~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 77 VVITAGAPQKPGETR-LDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred EEEecCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 999999754433333 48889999999999998888633345565554
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.12 E-value=6e-05 Score=66.03 Aligned_cols=174 Identities=15% Similarity=0.067 Sum_probs=99.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
|+|.|+|++|.+|++++-.|+..| .++..++.+ ........+.......++.... ..+++.+.++++|+||-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~----~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYL----GPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEec----CCCchHHhcCCCCEEEE
Confidence 479999999999999999998887 578888877 2222111111110001111110 11335567789999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
+||........ ..+.++.|..-.+.+.+...++.....+|.+|--.-+... -...........+. ....
T Consensus 75 taG~~~k~g~t-R~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~---i~t~~~~~~s~~p~-------~rvi 143 (310)
T cd01337 75 PAGVPRKPGMT-RDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVP---IAAEVLKKAGVYDP-------KRLF 143 (310)
T ss_pred eCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHH---HHHHHHHHhcCCCH-------HHEE
Confidence 99975443333 3488999999999999999887333456666653200000 00000001111110 0113
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~ 201 (328)
|.+-+..-++-...++..+++..-++ +.|+|..
T Consensus 144 G~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 144 GVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred eeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 33334444555666666777766666 7788876
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.3e-06 Score=70.79 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=44.6
Q ss_pred CCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-------CCccEEEEc
Q 020266 16 GASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-------DGCDGVCHT 88 (328)
Q Consensus 16 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~d~vih~ 88 (328)
.++|+||++++++|+++|++|+++++... ... .....+|+.+.+++.+++ .++|++||+
T Consensus 22 ~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~-l~~-------------~~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnn 87 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAGHEVTLVTTKRA-LKP-------------EPHPNLSIREIETTKDLLITLKELVQEHDILIHS 87 (227)
T ss_pred CcccHHHHHHHHHHHHCCCEEEEEcChhh-ccc-------------ccCCcceeecHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 45899999999999999999999876311 000 001346787776655443 368999999
Q ss_pred cCCC
Q 020266 89 ASPF 92 (328)
Q Consensus 89 a~~~ 92 (328)
||..
T Consensus 88 Agv~ 91 (227)
T TIGR02114 88 MAVS 91 (227)
T ss_pred CEec
Confidence 9963
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.1e-05 Score=65.98 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=79.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccC--CCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDG--ASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
++|.|+|+ |.+|+.++..|+..| ++|.+++|+++..+.+...+.... .........+ +.. .+.++|+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~------~~~-~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAG------DYS-DCKDADIV 72 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcC------CHH-HhCCCCEE
Confidence 47999996 999999999999998 689999998877665544332111 0112222222 123 35789999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|+++|......... .+.++.|+.-.+.+.+.++++.....+|.+|-
T Consensus 73 Iitag~~~~~g~~R-~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 73 VITAGAPQKPGETR-LDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred EEccCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 99998754433333 47888999999999999988744445666664
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-06 Score=71.70 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=64.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
...++|-|||||.|.-++++|..+|.+-....|+..+.+.+...+. .++-..++-+++.+++..++.++|+||
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG-------~~~~~~p~~~p~~~~~~~~~~~VVlnc 78 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLG-------PEAAVFPLGVPAALEAMASRTQVVLNC 78 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcC-------ccccccCCCCHHHHHHHHhcceEEEec
Confidence 4569999999999999999999999999888999888887766542 223334444588899999999999999
Q ss_pred cCCCCC
Q 020266 89 ASPFYH 94 (328)
Q Consensus 89 a~~~~~ 94 (328)
+|++..
T Consensus 79 vGPyt~ 84 (382)
T COG3268 79 VGPYTR 84 (382)
T ss_pred cccccc
Confidence 998554
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.4e-06 Score=62.37 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=57.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCe-EEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
..++++++|.|+ |..|+.++.+|.+.|.+ |.++.|+.++...+...+ ....+.++.. +++.+.+..+|+
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~~-----~~~~~~~~~~Di 78 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEF----GGVNIEAIPL-----EDLEEALQEADI 78 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH----TGCSEEEEEG-----GGHCHHHHTESE
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc----CccccceeeH-----HHHHHHHhhCCe
Confidence 567899999997 89999999999999976 999999988777766654 1224555443 344466778999
Q ss_pred EEEccCC
Q 020266 85 VCHTASP 91 (328)
Q Consensus 85 vih~a~~ 91 (328)
||++.+.
T Consensus 79 vI~aT~~ 85 (135)
T PF01488_consen 79 VINATPS 85 (135)
T ss_dssp EEE-SST
T ss_pred EEEecCC
Confidence 9999765
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00013 Score=64.48 Aligned_cols=173 Identities=12% Similarity=0.049 Sum_probs=101.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-------eEEEEecCC--CChhhhhhhhhcc--CCCCcEEEEEccCCCcCchH
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRDP--NDPKKTRHLLALD--GASERLQLFKANLLEEGSFD 76 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~ 76 (328)
+..+|.|+|++|++|++++-.|+..|. ++..+++.+ +........+... .....+.. + ....
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-----~--~~~~ 74 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVA-----T--TDPE 74 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEE-----e--cChH
Confidence 356899999999999999999998873 788888854 2233322211111 00011211 1 1234
Q ss_pred HhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCCccccCC-CC
Q 020266 77 SIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDET-WF 154 (328)
Q Consensus 77 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~-~~ 154 (328)
+.++++|+||.+||........ ..+.+..|+.-.+.+.+.+.++.. ...+|.+|--.-+. ........ .+
T Consensus 75 ~~~~daDvVVitAG~~~k~g~t-R~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~-------t~v~~k~s~g~ 146 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPRKPGME-RADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTN-------ALIASKNAPDI 146 (323)
T ss_pred HHhCCCCEEEEeCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHH-------HHHHHHHcCCC
Confidence 5667899999999975433333 348899999999999999998843 44555555311000 00000011 11
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCC
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL 202 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~ 202 (328)
+. ....|.+.+..-++-...++..+++...++-..|+|...
T Consensus 147 p~-------~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG 187 (323)
T TIGR01759 147 PP-------KNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHS 187 (323)
T ss_pred CH-------HHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCC
Confidence 11 112344555555555666666788777777677778643
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=64.14 Aligned_cols=173 Identities=14% Similarity=0.048 Sum_probs=99.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-------eEEEEecCCCC--hhhhhhhhh-cc-CCCCcEEEEEccCCCcCchH
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRDPND--PKKTRHLLA-LD-GASERLQLFKANLLEEGSFD 76 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~-~~-~~~~~~~~~~~Dl~~~~~~~ 76 (328)
++++|.|+|++|.+|+.++-.|+..|. ++..+++.+.. .+.....+. .. ....++.+ + ....
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i-----~--~~~y 75 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI-----T--DDPN 75 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE-----e--cChH
Confidence 367899999999999999999887662 78888885432 222111111 10 10112222 1 1223
Q ss_pred HhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020266 77 SIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 77 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
+.++++|+||-+||....... ...+.++.|+.-.+.+.+...++. ....+|.+|--.-+.. ....... +.
T Consensus 76 ~~~~daDiVVitaG~~~k~g~-tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t-------~v~~k~s-~g 146 (326)
T PRK05442 76 VAFKDADVALLVGARPRGPGM-ERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNA-------LIAMKNA-PD 146 (326)
T ss_pred HHhCCCCEEEEeCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHH-------HHHHHHc-CC
Confidence 456789999999997543333 334888999999999999998853 2445666664210100 0000000 00
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~ 201 (328)
-| .....|.+-+..-++-...++..+++...++.-.|+|..
T Consensus 147 ~p-----~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeH 187 (326)
T PRK05442 147 LP-----AENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNH 187 (326)
T ss_pred CC-----HHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECC
Confidence 00 001233344455555556666677777777666667764
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.2e-05 Score=70.98 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=66.9
Q ss_pred CCCCeEEEECC----------------ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC
Q 020266 7 AAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70 (328)
Q Consensus 7 ~~~~~vlVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (328)
+++|+|+|||| ||.+|.+++++|..+|++|+.+.+...... ...+ ...|++
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~-----------~~~~--~~~~v~ 249 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLT-----------PPGV--KSIKVS 249 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCC-----------CCCc--EEEEec
Confidence 67899999998 467999999999999999999887653211 1122 446888
Q ss_pred CcCch-HHhh----CCccEEEEccCCCCCCCCCc----c---hhhhhHHHHHHHHHHHHHhcC
Q 020266 71 EEGSF-DSIV----DGCDGVCHTASPFYHDAKDP----Q---VELLDPAVKGTLNVLNSCAKF 121 (328)
Q Consensus 71 ~~~~~-~~~~----~~~d~vih~a~~~~~~~~~~----~---~~~~~~N~~~~~~l~~~~~~~ 121 (328)
+.+++ .+++ .++|++||+||......... . ...+..|+.-+.-+++..++.
T Consensus 250 ~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~ 312 (390)
T TIGR00521 250 TAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKI 312 (390)
T ss_pred cHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhh
Confidence 77776 4444 36899999999733221110 0 012234555556666665553
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00022 Score=62.60 Aligned_cols=116 Identities=16% Similarity=0.075 Sum_probs=75.5
Q ss_pred eEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||.|+|++|.+|++++-.|+..+. ++..+++.+.....+. +. .. .......... +.+++.+.++++|+||-+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~D-L~-~~--~~~~~i~~~~--~~~~~~~~~~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAAD-LS-HI--PTAASVKGFS--GEEGLENALKGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEch-hh-cC--CcCceEEEec--CCCchHHHcCCCCEEEEe
Confidence 589999999999999999988874 7888888662222111 11 10 0111111100 112345678899999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
||......... .+.+..|+.-.+.+.+...+......+|.+|--
T Consensus 75 aG~~~~~g~~R-~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 75 AGVPRKPGMTR-DDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCCCCCCCccH-HHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 99754433333 478899999999999998887333456666653
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00035 Score=62.36 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=76.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
++|.|+|+ |.+|+.++-.|+..| .++..++.+++........+... .......+ .++ .+++ .++++|+||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i-~~~----~dy~-~~~daDiVV 110 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKI-LAS----TDYA-VTAGSDLCI 110 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEE-EeC----CCHH-HhCCCCEEE
Confidence 68999996 999999999998877 47889998776554433322111 11112222 211 1233 377899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
-+||......... .+.+..|+.-.+.+.+...+++....+|.+|-
T Consensus 111 itAG~~~k~g~tR-~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 111 VTAGARQIPGESR-LNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred ECCCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999754433333 47888999999999999888743445666664
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=64.50 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=71.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhh---------------------hhhhhhccCCCCcEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKK---------------------TRHLLALDGASERLQ 63 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---------------------~~~~~~~~~~~~~~~ 63 (328)
.++.++|+|+|+ |.+|+++++.|+..|. ++.+++++.-+... ..+.+......-+++
T Consensus 21 ~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 21 KIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred hhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 345788999996 7799999999999997 78888886532211 122222222334567
Q ss_pred EEEccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 64 ~~~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
.+..|++ ++.+.++++++|+||.+.-. ...-..+-++|.+. +. .+|+.+..+
T Consensus 100 ~~~~~~~-~~~~~~~~~~~DlVid~~D~----------------~~~r~~in~~~~~~-~i-p~i~~~~~g 151 (338)
T PRK12475 100 PVVTDVT-VEELEELVKEVDLIIDATDN----------------FDTRLLINDLSQKY-NI-PWIYGGCVG 151 (338)
T ss_pred EEeccCC-HHHHHHHhcCCCEEEEcCCC----------------HHHHHHHHHHHHHc-CC-CEEEEEecc
Confidence 7777876 35678888999999987521 11112345667776 55 478877643
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0005 Score=63.86 Aligned_cols=156 Identities=24% Similarity=0.184 Sum_probs=102.1
Q ss_pred CCCCeEEEECCc-cHHHHHHHHHHHHCCCeEEEEec--CCCChhhhhhhhhccC-CCCcEEEEEccCCCcCchHHhhC--
Q 020266 7 AAGKVVCVTGAS-GYIASWLVKLLLSRGYTVKASVR--DPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 7 ~~~~~vlVtGat-G~iG~~l~~~L~~~g~~V~~~~r--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
+..+..+||||+ |-||..++..|+.-|..|+++.. +++..+.++.++.... ....+..+..++.++.+++++++
T Consensus 394 y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewI 473 (866)
T COG4982 394 YGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWI 473 (866)
T ss_pred cccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHh
Confidence 457889999976 88999999999999999999865 4444555666654333 34567788899999988888775
Q ss_pred -------------------CccEEEEccCCC-CCCC--CCc-chhhhhHHHHHHHHHHHHHhcCC---Cc---cEEEEec
Q 020266 81 -------------------GCDGVCHTASPF-YHDA--KDP-QVELLDPAVKGTLNVLNSCAKFP---SI---KRVVLTS 131 (328)
Q Consensus 81 -------------------~~d~vih~a~~~-~~~~--~~~-~~~~~~~N~~~~~~l~~~~~~~~---~~---~~~v~~S 131 (328)
.+|.+|-.|++. +... ..+ .+-.+++-+....+++-..++.+ ++ -++|.-+
T Consensus 474 g~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPg 553 (866)
T COG4982 474 GDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPG 553 (866)
T ss_pred ccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecC
Confidence 247888888872 2111 111 11334455555666666555541 11 2455555
Q ss_pred chhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc
Q 020266 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185 (328)
Q Consensus 132 S~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~ 185 (328)
|-. -+..+ ..-.|+.+|.+-|.++.+|+.+.
T Consensus 554 SPN-rG~FG----------------------gDGaYgEsK~aldav~~RW~sEs 584 (866)
T COG4982 554 SPN-RGMFG----------------------GDGAYGESKLALDAVVNRWHSES 584 (866)
T ss_pred CCC-CCccC----------------------CCcchhhHHHHHHHHHHHhhccc
Confidence 531 11000 11349999999999999998875
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.7e-05 Score=61.92 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=60.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 88 (328)
|+++|.|+ |-+|..+++.|.+.||+|+++.++++........ ......+.+|-++++.++++ ++++|+++=+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 57888885 9999999999999999999999998775542110 13577899999999999988 7789999866
Q ss_pred cC
Q 020266 89 AS 90 (328)
Q Consensus 89 a~ 90 (328)
.+
T Consensus 74 t~ 75 (225)
T COG0569 74 TG 75 (225)
T ss_pred eC
Confidence 54
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00052 Score=60.76 Aligned_cols=120 Identities=18% Similarity=0.099 Sum_probs=76.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhh--hhhhhhccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKK--TRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
.+.+||.|+| +|.+|+.++..|+..|. +|..++++++.... +.............++... .++ +.++++|
T Consensus 4 ~~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~-----~d~-~~l~~aD 76 (321)
T PTZ00082 4 IKRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT-----NNY-EDIAGSD 76 (321)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC-----CCH-HHhCCCC
Confidence 3467899999 59999999999988895 88899988775432 2111111111112222211 123 3568899
Q ss_pred EEEEccCCCCCCCC----CcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 84 GVCHTASPFYHDAK----DPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 84 ~vih~a~~~~~~~~----~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
+||.+++....... ....+.+..|+.-.+.+++.+.+......+|.+|-.
T Consensus 77 iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP 130 (321)
T PTZ00082 77 VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNP 130 (321)
T ss_pred EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 99999987432222 023467778999888998888887333357776653
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=64.68 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=72.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhh---------------------hhhhccCCCCcEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTR---------------------HLLALDGASERLQ 63 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~---------------------~~~~~~~~~~~~~ 63 (328)
.++.++|+|.|+ |.+|++++..|+..|. ++.+++.+..+...+. +.+......-+++
T Consensus 21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 445788999997 9999999999999997 7999988653322221 1122222223466
Q ss_pred EEEccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 64 ~~~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
.+..+++. +.+.++++++|+||.+.- |...-..+-++|.+. +. .+|+.|+.+
T Consensus 100 ~~~~~~~~-~~~~~~~~~~DlVid~~D----------------n~~~r~~ln~~~~~~-~i-P~i~~~~~g 151 (339)
T PRK07688 100 AIVQDVTA-EELEELVTGVDLIIDATD----------------NFETRFIVNDAAQKY-GI-PWIYGACVG 151 (339)
T ss_pred EEeccCCH-HHHHHHHcCCCEEEEcCC----------------CHHHHHHHHHHHHHh-CC-CEEEEeeee
Confidence 66677753 556778889999998742 122223566777776 54 488887753
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00024 Score=62.76 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=73.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
|++|.|+|+ |.+|..++..|+..|. +|.+++++++........+.... ......+.++...++. .++++|+||-
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~~~~~~~~i~~~~d~~-~~~~aDiVii 76 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---PVEGFDTKITGTNDYE-DIAGSDVVVI 76 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---hhcCCCcEEEeCCCHH-HHCCCCEEEE
Confidence 468999998 9999999999998875 99999997765433221111100 0000001111112333 4688999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+++....... ...+.+..|+.-...+++...+......+|.++-
T Consensus 77 ~~~~p~~~~~-~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 77 TAGVPRKPGM-SRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9886443322 2236667899888888888877633344666654
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0001 Score=66.50 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=63.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHH-hhCCccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-IVDGCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~v 85 (328)
++|+|.|.||||++|..|++.|.++ +++|..+.+.....+.+.... .....+|+.+.++++. .++++|+|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~--------~~l~~~~~~~~~~~~~~~~~~~DvV 108 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVF--------PHLITQDLPNLVAVKDADFSDVDAV 108 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhC--------ccccCccccceecCCHHHhcCCCEE
Confidence 3568999999999999999999998 689999887544432222111 1122244443333332 24789999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhh
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAA 135 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~ 135 (328)
|-+.+. ..+..++..+. . + .++|-.|+...
T Consensus 109 f~Alp~-----------------~~s~~i~~~~~-~-g-~~VIDlSs~fR 138 (381)
T PLN02968 109 FCCLPH-----------------GTTQEIIKALP-K-D-LKIVDLSADFR 138 (381)
T ss_pred EEcCCH-----------------HHHHHHHHHHh-C-C-CEEEEcCchhc
Confidence 976542 13455555553 3 3 57999999653
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.1e-05 Score=60.83 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=46.1
Q ss_pred CCCCeEEEECC----------------ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC
Q 020266 7 AAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70 (328)
Q Consensus 7 ~~~~~vlVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (328)
+++|+||||+| ||-.|.+|++++..+|++|+.+..... ... +..++.+..+-.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~~----------p~~~~~i~v~sa 69 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LPP----------PPGVKVIRVESA 69 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS---------------TTEEEEE-SSH
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-ccc----------cccceEEEecch
Confidence 35788999864 799999999999999999999988732 111 235666654322
Q ss_pred C--cCchHHhhCCccEEEEccCCCC
Q 020266 71 E--EGSFDSIVDGCDGVCHTASPFY 93 (328)
Q Consensus 71 ~--~~~~~~~~~~~d~vih~a~~~~ 93 (328)
+ .+.+.+.++..|++||+||...
T Consensus 70 ~em~~~~~~~~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 70 EEMLEAVKELLPSADIIIMAAAVSD 94 (185)
T ss_dssp HHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred hhhhhhhccccCcceeEEEecchhh
Confidence 1 1224444557899999999743
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0003 Score=62.31 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=76.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccC--CCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDG--ASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+.++|.|+|| |.+|+.++..|+..| .++..++++++............. ....... ....+++ .++++|+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-----~~~~d~~-~l~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-----LGTNNYE-DIKDSDV 76 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEE-----EeCCCHH-HhCCCCE
Confidence 4678999997 999999999888888 788899987765433221111110 0011111 1113445 5689999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
||-+++........ ..+.+..|..-.+.+.+.+.+.+....+|.+|-.
T Consensus 77 VVitag~~~~~g~~-r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP 124 (319)
T PTZ00117 77 VVITAGVQRKEEMT-REDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124 (319)
T ss_pred EEECCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 99999874433223 3477888998888999988887333346666653
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00027 Score=60.87 Aligned_cols=116 Identities=16% Similarity=0.044 Sum_probs=78.1
Q ss_pred EEEECCccHHHHHHHHHHHHCC----CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 12 VCVTGASGYIASWLVKLLLSRG----YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
|.|+||+|.+|..++..|+..| .+|..++++++..+.....+....... ....+.--.++.+.++++|+||-
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~----~~~~i~~~~d~~~~~~~aDiVv~ 76 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL----ADIKVSITDDPYEAFKDADVVII 76 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc----cCcEEEECCchHHHhCCCCEEEE
Confidence 5799999999999999999988 789999998776655443332211110 11122222345667889999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+++......... ......|+.-.+.+++..++.+....+|.+|-
T Consensus 77 t~~~~~~~g~~r-~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN 120 (263)
T cd00650 77 TAGVGRKPGMGR-LDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120 (263)
T ss_pred CCCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 998744433333 36677899999999999988743344555543
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00022 Score=53.65 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=56.2
Q ss_pred eEEEECCccHHHHHHHHHHHHCC-CeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRG-YTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g-~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||.|+||||++|+.|++.|.++. .++..+ .++.+....+............+.+.. . +. +.+.++|+||.|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~---~~-~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED---A---DP-EELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE---T---SG-HHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee---c---ch-hHhhcCCEEEec
Confidence 69999999999999999999974 565554 455434444444433211111222221 1 22 234789999988
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
.+. .....+...+.+. +. ++|=.|+.
T Consensus 74 ~~~-----------------~~~~~~~~~~~~~-g~-~ViD~s~~ 99 (121)
T PF01118_consen 74 LPH-----------------GASKELAPKLLKA-GI-KVIDLSGD 99 (121)
T ss_dssp SCH-----------------HHHHHHHHHHHHT-TS-EEEESSST
T ss_pred Cch-----------------hHHHHHHHHHhhC-Cc-EEEeCCHH
Confidence 642 1123444555554 54 67777774
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00096 Score=58.62 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=76.7
Q ss_pred eEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhc-cC-C-CCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 11 VVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL-DG-A-SERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~-~-~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
||.|+|+ |.+|..++-.|+..| -++..++..++..+....-+.. .. . ..+++...+| .+.++++|+|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-------y~~~~~aDiv 72 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-------YDDCADADII 72 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-------HHHhCCCCEE
Confidence 5889998 999999999999887 3788999877655443332221 11 1 1234444333 3456789999
Q ss_pred EEccCCCCCCCCCc-chhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDP-QVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~-~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|-+||......... ..+.++.|+.-.+.+.+...+++....+|.+|-
T Consensus 73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 99999754332221 248889999999999999988843334555544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0004 Score=60.38 Aligned_cols=115 Identities=20% Similarity=0.149 Sum_probs=75.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccC-CCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+||.|+|+ |+||+.++-.|+.++ .++..+++.++........+.... ....-..+.+| .+ .+.++++|+|+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~----y~~~~~aDiVv 74 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD----YEDLKGADIVV 74 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC----hhhhcCCCEEE
Confidence 47999999 999999999997775 489999998555443322221111 00111222232 11 33567899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEec
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~S 131 (328)
-.||......... .+.++.|..-...+.+...+.+....|+.+|
T Consensus 75 itAG~prKpGmtR-~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 75 ITAGVPRKPGMTR-LDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred EeCCCCCCCCCCH-HHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 9998755444343 3889999999999999988873333444444
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00057 Score=60.22 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=77.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.+||.|+|+ |.+|..++-.|+..| .++..++.+++........+... ........... .++++ ++++|+|
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~-----~dy~~-~~~adiv 75 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD-----KDYSV-TANSKVV 75 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC-----CCHHH-hCCCCEE
Confidence 458999996 999999999998877 47888998776554433222111 11111122211 23343 6889999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|-+||........ ..+.++.|+.-.+.+.+...+......+|.+|-
T Consensus 76 vitaG~~~k~g~~-R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 76 IVTAGARQNEGES-RLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred EECCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 9999975443323 347889999999999999988744445666664
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=68.26 Aligned_cols=75 Identities=25% Similarity=0.232 Sum_probs=54.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
+++|+|+|+|+++ +|..+++.|++.|++|.+.+++... .......+. ..++.++.+|..+ +...++|+|
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~----~~~~~~~~~~~~~-----~~~~~~d~v 72 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELG----ELGIELVLGEYPE-----EFLEGVDLV 72 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH----hcCCEEEeCCcch-----hHhhcCCEE
Confidence 4678999999877 9999999999999999999986522 211111111 1246677788765 345679999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|++++.
T Consensus 73 v~~~g~ 78 (450)
T PRK14106 73 VVSPGV 78 (450)
T ss_pred EECCCC
Confidence 999886
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0011 Score=58.56 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=74.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhh-hhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRH-LLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|+|.|.|+ |.+|..++..|+..| .+|.+++++++....... +..............+ +. +.++++|+||
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~------d~-~~l~~aDiVi 72 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAG------DY-ADCKGADVVV 72 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeC------CH-HHhCCCCEEE
Confidence 46999997 999999999999999 689999998765543111 1111111112222222 23 3478899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
-+++....... ...+....|+...+.+.+.+.+......++.++.
T Consensus 73 ita~~~~~~~~-~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tN 117 (308)
T cd05292 73 ITAGANQKPGE-TRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTN 117 (308)
T ss_pred EccCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99987443333 3347788899999999998888733344555543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00019 Score=60.21 Aligned_cols=116 Identities=17% Similarity=0.088 Sum_probs=73.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEE---EEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVK---ASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
+-+|.|.||.|.||+.|.-.| +....|. ..+.... ......+....-..++ ...+-++.++++++++|+|
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLl-K~np~Vs~LaLYDi~~~--~GVaaDlSHI~T~s~V----~g~~g~~~L~~al~~advV 100 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLL-KLNPLVSELALYDIANT--PGVAADLSHINTNSSV----VGFTGADGLENALKGADVV 100 (345)
T ss_pred cceEEEEecCCccCccHHHHH-hcCcccceeeeeecccC--CcccccccccCCCCce----eccCChhHHHHHhcCCCEE
Confidence 568999999999999999655 4443333 3332211 1111111111101122 2333446899999999999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|--||......... ++.+.+|..-.+.|..++.+.+....+..||-
T Consensus 101 vIPAGVPRKPGMTR-DDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 101 VIPAGVPRKPGMTR-DDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred EecCCCCCCCCCcH-HHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 99999865444333 38899999999999999988744445555554
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00098 Score=61.07 Aligned_cols=174 Identities=11% Similarity=0.024 Sum_probs=104.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHC-------CC--eEEEEecCCCChhhhhhhhhcc--CCCCcEEEEEccCCCcCchH
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSR-------GY--TVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFD 76 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~-------g~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~ 76 (328)
+.-+|.|+|++|.+|.+++-.|+.. |. ++..++++++..+.....+... ....++.+..+| .
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~-------y 171 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDP-------Y 171 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCC-------H
Confidence 3568999999999999999999987 53 7888888887766543332211 111122222111 3
Q ss_pred HhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhc-CCCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020266 77 SIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK-FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 77 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~-~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
+.++++|+||-+||.......+ ..+.++.|+.-.+.+.+...+ ......+|.+|--.-+.. .........+
T Consensus 172 e~~kdaDiVVitAG~prkpG~t-R~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t-------~v~~k~sg~~ 243 (444)
T PLN00112 172 EVFQDAEWALLIGAKPRGPGME-RADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNA-------LICLKNAPNI 243 (444)
T ss_pred HHhCcCCEEEECCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHH-------HHHHHHcCCC
Confidence 4567899999999975443333 348899999999999999988 434446677665211110 0000111000
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCC
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL 202 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~ 202 (328)
.. ...=..+.+..-++-...+++.+++...++-..|+|...
T Consensus 244 ~~------rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHG 284 (444)
T PLN00112 244 PA------KNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS 284 (444)
T ss_pred Cc------ceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCC
Confidence 00 011122233334555555666788888887777888743
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00061 Score=56.14 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=69.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh-------------------hhhccCCCCcEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-------------------LLALDGASERLQLF 65 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 65 (328)
.++.++|+|.| .|.+|+.+++.|...|. ++.+++.+.-+...+.+ .+......-+++.+
T Consensus 18 kl~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 18 RLLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HhcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 45678899999 59999999999999995 78888887443333322 22222222344555
Q ss_pred EccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 66 ~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
...+.+ +.+.+.++++|+||.+... ...-..+-+.|++. +. .+|+.++.
T Consensus 97 ~~~i~~-~~~~~~~~~~D~Vi~~~d~----------------~~~r~~l~~~~~~~-~i-p~i~~~~~ 145 (202)
T TIGR02356 97 KERVTA-ENLELLINNVDLVLDCTDN----------------FATRYLINDACVAL-GT-PLISAAVV 145 (202)
T ss_pred hhcCCH-HHHHHHHhCCCEEEECCCC----------------HHHHHHHHHHHHHc-CC-CEEEEEec
Confidence 555543 4567788899999987532 11223455677776 54 47887764
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.6e-05 Score=48.83 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=31.3
Q ss_pred HHhCCCCCCCCCC-CCCCCCCCceecchHHH-HhcCCc-cccHHHHHHHHHHHHHHcC
Q 020266 270 RELYPAFQLPEKC-ADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 270 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
.+..|. +++... +....+......|++|+ +.|||+ .++++++++++.+|++.+.
T Consensus 3 e~vtG~-~i~~~~~~rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np 59 (62)
T PF13950_consen 3 EKVTGK-KIPVEYAPRRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNP 59 (62)
T ss_dssp HHHHTS----EEEE---TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHST
T ss_pred HHHHCC-CCCceECCCCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCc
Confidence 444442 334333 33355567788999999 999999 8899999999999998864
|
... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=67.57 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=58.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 88 (328)
|+|+|+|+ |.+|+++++.|.+.|++|++++++++..+.+.. ..++.++.||.+++..+.++ ++++|.||-+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD-------RLDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh-------hcCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 47999997 999999999999999999999998765444322 12578899999998888877 7789998876
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
.
T Consensus 73 ~ 73 (453)
T PRK09496 73 T 73 (453)
T ss_pred c
Confidence 5
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.007 Score=46.84 Aligned_cols=187 Identities=17% Similarity=0.152 Sum_probs=101.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC--Cc-Cch----HHhhC-
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL--EE-GSF----DSIVD- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~~-~~~----~~~~~- 80 (328)
-.+|+|-||-|-+|++.++.|.++++.|.-++.++.+... .-..+.+|-. +. +.+ ...+.
T Consensus 3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~Ad------------~sI~V~~~~swtEQe~~v~~~vg~sL~g 70 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQAD------------SSILVDGNKSWTEQEQSVLEQVGSSLQG 70 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccccc------------ceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence 4589999999999999999999999999998886544321 1223333321 11 111 11222
Q ss_pred -CccEEEEccCCCCCCCC------CcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 81 -GCDGVCHTASPFYHDAK------DPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 81 -~~d~vih~a~~~~~~~~------~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
.+|.||..||--..... .+.+..++..+.....-.+.+-++-+.+-+..+....+..+ + +
T Consensus 71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~-g------------T 137 (236)
T KOG4022|consen 71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALG-G------------T 137 (236)
T ss_pred cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccC-C------------C
Confidence 68999998875222111 11112233233222222222333323334555544332221 1 0
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh-cCcc----EEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC-CC
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-KSID----LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN-VT 227 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~~~~----~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 227 (328)
| ....|+..|.+..++.++++.+ .|++ +..+-|-..-.|.....+ |+ ..
T Consensus 138 P--------gMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwM-----------------P~ADf 192 (236)
T KOG4022|consen 138 P--------GMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWM-----------------PNADF 192 (236)
T ss_pred C--------cccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccccC-----------------CCCcc
Confidence 0 1234999999999999998765 3553 334444444444322111 22 22
Q ss_pred ccceeHHHHHHHHHHhhc
Q 020266 228 FGWVNVKDVANAHIQAFE 245 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~ 245 (328)
-+|.....+++.++.-..
T Consensus 193 ssWTPL~fi~e~flkWtt 210 (236)
T KOG4022|consen 193 SSWTPLSFISEHFLKWTT 210 (236)
T ss_pred cCcccHHHHHHHHHHHhc
Confidence 346777777777766654
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00022 Score=63.55 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=46.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC---eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY---TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
|++|+|.||||++|+.|++.|.++|| ++..+.+.....+.+. . .+......|+.+. .++++|+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~----~----~g~~i~v~d~~~~-----~~~~vDvV 67 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS----F----KGKELKVEDLTTF-----DFSGVDIA 67 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee----e----CCceeEEeeCCHH-----HHcCCCEE
Confidence 46899999999999999999999876 4577776654433321 0 1123333455431 23689999
Q ss_pred EEccC
Q 020266 86 CHTAS 90 (328)
Q Consensus 86 ih~a~ 90 (328)
|-+++
T Consensus 68 f~A~g 72 (334)
T PRK14874 68 LFSAG 72 (334)
T ss_pred EECCC
Confidence 97765
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=58.35 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=73.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh-hhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-LLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
|+|.|.|+ |.+|..++..|+..|+ +|+++++.++....... ...... .....+.++--.++.+ +.++|+||-
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~----~~~~~~~i~~t~d~~~-~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASP----VGGFDTKVTGTNNYAD-TANSDIVVI 75 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhh----ccCCCcEEEecCCHHH-hCCCCEEEE
Confidence 57999996 9999999999999886 89999986554332111 111000 0000111211123444 578999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+++....... ...+.+..|+.-...+++...+......+|.+|-
T Consensus 76 tag~p~~~~~-sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 76 TAGLPRKPGM-SREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred cCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9986443322 2336788899999999998887633345666665
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=54.30 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=70.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh---------------------hhhccCCCCcEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH---------------------LLALDGASERLQ 63 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~---------------------~~~~~~~~~~~~ 63 (328)
..+..+|+|.|+.| +|..+++.|+..|. ++.+++.+.-+...+.+ .+......-+++
T Consensus 16 ~L~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 16 KLRSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLS 94 (198)
T ss_pred HHhhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEE
Confidence 34567899999866 99999999999994 58888765433222221 122222233566
Q ss_pred EEEccCCC-cCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhcc
Q 020266 64 LFKANLLE-EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 64 ~~~~Dl~~-~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~ 138 (328)
.+..++++ .+...+.++.+|+||.+.. |......+-+.|++. +. .+|+.++. ..+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~dvVi~~~d----------------~~~~~~~ln~~c~~~-~i-p~i~~~~~-G~~G 151 (198)
T cd01485 95 IVEEDSLSNDSNIEEYLQKFTLVIATEE----------------NYERTAKVNDVCRKH-HI-PFISCATY-GLIG 151 (198)
T ss_pred EEecccccchhhHHHHHhCCCEEEECCC----------------CHHHHHHHHHHHHHc-CC-CEEEEEee-cCEE
Confidence 66666653 3456677888999996532 112223455778776 55 58888874 3553
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00031 Score=53.13 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=67.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++++|++.|. | -|.+++..|.+.|++|++++.++...+.... ..+.++.+|+.+++ -++-+++|.|+-
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~--------~~~~~v~dDlf~p~--~~~y~~a~liys 83 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAKK--------LGLNAFVDDLFNPN--LEIYKNAKLIYS 83 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------hCCeEEECcCCCCC--HHHHhcCCEEEE
Confidence 3578999995 6 8999999999999999999999875443222 25788999999876 334567888874
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
.= +..+. ...+++.+++. ++.-+|..=|
T Consensus 84 ir---------pp~el-------~~~~~~la~~~-~~~~~i~~l~ 111 (134)
T PRK04148 84 IR---------PPRDL-------QPFILELAKKI-NVPLIIKPLS 111 (134)
T ss_pred eC---------CCHHH-------HHHHHHHHHHc-CCCEEEEcCC
Confidence 32 11122 34677888887 6665554433
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00027 Score=62.39 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=33.2
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (328)
|+|.|+| +|.+|..++..|++.|++|++.+|+++...
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~~ 39 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAAA 39 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHHH
Confidence 5799999 799999999999999999999999876544
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0002 Score=71.92 Aligned_cols=77 Identities=19% Similarity=0.147 Sum_probs=60.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-Ce-------------EEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YT-------------VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 73 (328)
++|+|+|.|| |++|+..++.|.+.+ ++ |.+.+++.+....+.... ++++.++.|+.|.+
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------~~~~~v~lDv~D~e 640 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------ENAEAVQLDVSDSE 640 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc------CCCceEEeecCCHH
Confidence 4789999996 999999999998763 44 666777765554443321 35778999999999
Q ss_pred chHHhhCCccEEEEccCC
Q 020266 74 SFDSIVDGCDGVCHTASP 91 (328)
Q Consensus 74 ~~~~~~~~~d~vih~a~~ 91 (328)
++.++++++|+||.+...
T Consensus 641 ~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 641 SLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHhhcCCCEEEECCCc
Confidence 999998999999999854
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00033 Score=55.07 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=52.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++++|+|+|+ |.+|..+++.|.+.| ++|.+.+|+.+....+...... ..+..+.. +..+.++++|+|
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~Dvv 85 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LGIAIAYL---DLEELLAEADLI 85 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cccceeec---chhhccccCCEE
Confidence 45789999997 999999999999986 8899999987665543333211 00112222 334447789999
Q ss_pred EEccCCC
Q 020266 86 CHTASPF 92 (328)
Q Consensus 86 ih~a~~~ 92 (328)
|.+....
T Consensus 86 i~~~~~~ 92 (155)
T cd01065 86 INTTPVG 92 (155)
T ss_pred EeCcCCC
Confidence 9998763
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00038 Score=69.00 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=109.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCe-EEEEecCCCChhhhhhhh-hccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLL-ALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
.|..+|+||-|..|-.|+..|..+|.+ +....|+--+...-.... ......-++..-..|++..+....+++
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl~ 1847 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKLG 1847 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhcc
Confidence 578999999999999999999999976 455567654433211111 111122345555578877777666665
Q ss_pred CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 81 ~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
-+-.|||+|+...+ -...+++++-+.-+.||.||=..-++.+ ..+-||.+||.+. |.+.-
T Consensus 1848 ~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvsc--GRGN~------------ 1913 (2376)
T KOG1202|consen 1848 PVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSC--GRGNA------------ 1913 (2376)
T ss_pred cccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecc--cCCCC------------
Confidence 35899999986432 2233444555556778888877777763 3467999999643 32211
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcc
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMV 197 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v 197 (328)
..+.||.+-.++|+++..-. .+|++-+.+.-|.|
T Consensus 1914 --------GQtNYG~aNS~MERiceqRr-~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1914 --------GQTNYGLANSAMERICEQRR-HEGFPGTAIQWGAI 1947 (2376)
T ss_pred --------cccccchhhHHHHHHHHHhh-hcCCCcceeeeecc
Confidence 12459999999999997753 45888777765544
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0039 Score=54.74 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=75.9
Q ss_pred EEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCC-CCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 12 VCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGA-SERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
|.|.|+ |.+|..++-.|+..| .++.+++++++........+..... ........+ .+ .+.++++|+||.+
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~-----~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG-----GD-YADAADADIVVIT 73 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC-----CC-HHHhCCCCEEEEc
Confidence 468886 889999999999888 7899999987766554443322111 111222211 11 2467889999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
||......... .+.+..|+.-.+.+.+..+++.....+|.+|-
T Consensus 74 ag~p~~~~~~R-~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 74 AGAPRKPGETR-LDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 99754433333 47788899999999999988743345666654
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0019 Score=54.35 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=68.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhh-------------------hhhhccCCCCcEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTR-------------------HLLALDGASERLQLF 65 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 65 (328)
.++.++|+|.| .|.+|+++++.|+..|. ++++++.+.-+...+. +.+......-+++.+
T Consensus 18 ~L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 18 KLKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 44578999999 59999999999999995 6777765433222222 222222222356666
Q ss_pred EccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 66 ~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
..+++ .+.+.++++++|+||.+... ...-..+-++|.+. +. .+|+.+..
T Consensus 97 ~~~i~-~~~~~~~~~~~DvVi~~~d~----------------~~~r~~l~~~~~~~-~i-p~i~~g~~ 145 (228)
T cd00757 97 NERLD-AENAEELIAGYDLVLDCTDN----------------FATRYLINDACVKL-GK-PLVSGAVL 145 (228)
T ss_pred cceeC-HHHHHHHHhCCCEEEEcCCC----------------HHHHHHHHHHHHHc-CC-CEEEEEec
Confidence 66663 35667788899999987532 11123456677776 54 57887664
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.004 Score=56.22 Aligned_cols=171 Identities=12% Similarity=0.062 Sum_probs=96.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-----eEEE----EecCCCChhhhhhhhhc-c-CCCCcEEEEEccCCCcCchHH
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY-----TVKA----SVRDPNDPKKTRHLLAL-D-GASERLQLFKANLLEEGSFDS 77 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~-~-~~~~~~~~~~~Dl~~~~~~~~ 77 (328)
.-+|.|+|++|.+|.+++-.|+..|. +|.+ ++++.+..+.....+.. . ....++.+..+| .+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~-------y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDP-------YE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCC-------HH
Confidence 56899999999999999999988762 2333 35665555443322211 1 111122222111 34
Q ss_pred hhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCC-CCC
Q 020266 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDET-WFS 155 (328)
Q Consensus 78 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~-~~~ 155 (328)
.++++|+||-+||........ ..+.++.|+.-.+.+.....++. ...++|.+|--.-+.. ....... .++
T Consensus 117 ~~kdaDIVVitAG~prkpg~t-R~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t-------~v~~k~sg~~~ 188 (387)
T TIGR01757 117 VFEDADWALLIGAKPRGPGME-RADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNA-------LIAMKNAPNIP 188 (387)
T ss_pred HhCCCCEEEECCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHH-------HHHHHHcCCCc
Confidence 567899999999975443333 34888999999999999998852 3345666664211100 0000000 000
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~ 201 (328)
. ...=..+.+..-++-...+++.+++..-++-+.|.|..
T Consensus 189 ~-------rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeH 227 (387)
T TIGR01757 189 R-------KNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNH 227 (387)
T ss_pred c-------cEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecC
Confidence 0 01112233334455555566667777777666778864
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00055 Score=59.45 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=52.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++++++|+|+ |.+|++++..|...| .+|+++.|+.++...+...+... ..+.+ ++ +..+.+.++|+|
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~---~~~~~---~~----~~~~~~~~~Div 189 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL---GKAEL---DL----ELQEELADFDLI 189 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc---cceee---cc----cchhccccCCEE
Confidence 45789999996 999999999999999 78999999987766654443211 01221 11 223455679999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|++...
T Consensus 190 InaTp~ 195 (278)
T PRK00258 190 INATSA 195 (278)
T ss_pred EECCcC
Confidence 999754
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00089 Score=54.39 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=43.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
||++.|. |+|.||+.|++.|...||+|++-.|+.++ .......+. +. -......++.+.+|+||-
T Consensus 1 m~~~~i~-GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~-----~~--------i~~~~~~dA~~~aDVVvL 66 (211)
T COG2085 1 MMIIAII-GTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG-----PL--------ITGGSNEDAAALADVVVL 66 (211)
T ss_pred CcEEEEe-ccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc-----cc--------cccCChHHHHhcCCEEEE
Confidence 4555555 58999999999999999999998665444 333333221 11 122445667778899985
Q ss_pred c
Q 020266 88 T 88 (328)
Q Consensus 88 ~ 88 (328)
.
T Consensus 67 A 67 (211)
T COG2085 67 A 67 (211)
T ss_pred e
Confidence 4
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0023 Score=55.88 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG 33 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g 33 (328)
+++|.|.||||.+|+.+++.|.++.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~ 25 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH 25 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC
Confidence 4689999999999999999999964
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00077 Score=60.33 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~ 44 (328)
|++|+|+||||++|+.+++.|.+. ++++..+.++.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~ 38 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS 38 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc
Confidence 478999999999999999999987 678877766433
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00048 Score=61.19 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=54.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeE---EEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTV---KASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
|++|.|+||||++|+.|++.|.+++|.+ ..+ ++.+..... +. . .+ ...++.+.+.. + ++++|+|
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~---l~--~--~~---~~l~~~~~~~~-~-~~~vD~v 70 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHS---VP--F--AG---KNLRVREVDSF-D-FSQVQLA 70 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCe---ec--c--CC---cceEEeeCChH-H-hcCCCEE
Confidence 4689999999999999999999876643 333 333222110 00 0 01 12333333322 2 4689999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
|-+++. . ....++..+.+. ++ ++|=.|+..
T Consensus 71 Fla~p~----------~-------~s~~~v~~~~~~-G~-~VIDlS~~f 100 (336)
T PRK05671 71 FFAAGA----------A-------VSRSFAEKARAA-GC-SVIDLSGAL 100 (336)
T ss_pred EEcCCH----------H-------HHHHHHHHHHHC-CC-eEEECchhh
Confidence 876541 1 112355666555 54 577778754
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0026 Score=52.84 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=67.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhh------------------hhhhccCCCCcEEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTR------------------HLLALDGASERLQLFK 66 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 66 (328)
.++..+|+|.|+ |.+|+.+++.|...|. ++++++.+.-+...+. +.+.......+++.+.
T Consensus 25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~ 103 (212)
T PRK08644 25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN 103 (212)
T ss_pred HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 445788999995 9999999999999995 4888887633222221 1222222233555666
Q ss_pred ccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 67 ~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
..+++ +.+.+.++++|+||.+.- |...-..+.+.|.+..+ ..+|+.+..
T Consensus 104 ~~i~~-~~~~~~~~~~DvVI~a~D----------------~~~~r~~l~~~~~~~~~-~p~I~~~~~ 152 (212)
T PRK08644 104 EKIDE-DNIEELFKDCDIVVEAFD----------------NAETKAMLVETVLEHPG-KKLVAASGM 152 (212)
T ss_pred eecCH-HHHHHHHcCCCEEEECCC----------------CHHHHHHHHHHHHHhCC-CCEEEeehh
Confidence 56654 456677888999998731 11222345556655423 357777553
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0032 Score=51.61 Aligned_cols=111 Identities=11% Similarity=0.128 Sum_probs=68.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhh-------------------hhhhccCCCCcEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTR-------------------HLLALDGASERLQLF 65 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 65 (328)
.++.++|+|.|+.| +|.++++.|+..|. ++.+++.+.-+...+. +.+......-+++.+
T Consensus 18 ~L~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 18 RLRSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 34578899999755 99999999999995 5778776543322222 112222223355666
Q ss_pred EccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhcc
Q 020266 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 66 ~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~ 138 (328)
...++ +...+.++++|+||.+... ...-..+-+.|++. +. .+|+.++.+ .+|
T Consensus 97 ~~~~~--~~~~~~~~~~dvVi~~~~~----------------~~~~~~ln~~c~~~-~i-p~i~~~~~G-~~G 148 (197)
T cd01492 97 TDDIS--EKPEEFFSQFDVVVATELS----------------RAELVKINELCRKL-GV-KFYATGVHG-LFG 148 (197)
T ss_pred ecCcc--ccHHHHHhCCCEEEECCCC----------------HHHHHHHHHHHHHc-CC-CEEEEEecC-CEE
Confidence 65555 2345667889999976321 12223455677776 65 478888743 443
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0018 Score=58.09 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=58.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHC-CCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEE-EccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLF-KANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d~vi 86 (328)
++|.|+||||++|..+++.|.+. ++++..+ ++.+...+.+.... +.+... ..++.+ .+..++.+++|+||
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~------~~l~~~~~~~~~~-~~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVH------PHLRGLVDLNLEP-IDEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhC------ccccccCCceeec-CCHHHhhcCCCEEE
Confidence 47999999999999999999987 5787754 44432222222221 111111 111221 23344545799999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
-+...- ....++..+.+. + .++|=.|+..
T Consensus 74 ~alP~~-----------------~s~~~~~~~~~~-G-~~VIDlS~~f 102 (346)
T TIGR01850 74 LALPHG-----------------VSAELAPELLAA-G-VKVIDLSADF 102 (346)
T ss_pred ECCCch-----------------HHHHHHHHHHhC-C-CEEEeCChhh
Confidence 776421 234455555554 4 5788888864
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0023 Score=49.10 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=68.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh-------------------hhhccCCCCcEEEEEcc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-------------------LLALDGASERLQLFKAN 68 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~D 68 (328)
.++|+|.|+ |.+|+.+++.|+..|. ++.+++.+.-+...+.+ .+......-+++.+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 578999995 9999999999999996 68888865443333222 22222223456677777
Q ss_pred CCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 69 l~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
+ +.+...++++++|+||.+... ...-..+.+.|++. +. .+|+.++.
T Consensus 81 ~-~~~~~~~~~~~~d~vi~~~d~----------------~~~~~~l~~~~~~~-~~-p~i~~~~~ 126 (135)
T PF00899_consen 81 I-DEENIEELLKDYDIVIDCVDS----------------LAARLLLNEICREY-GI-PFIDAGVN 126 (135)
T ss_dssp C-SHHHHHHHHHTSSEEEEESSS----------------HHHHHHHHHHHHHT-T--EEEEEEEE
T ss_pred c-ccccccccccCCCEEEEecCC----------------HHHHHHHHHHHHHc-CC-CEEEEEee
Confidence 7 345577778899999987532 22234566678776 54 58887774
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0035 Score=54.05 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=69.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhh-------------------hhccCCCCcEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLF 65 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 65 (328)
.++..+|+|.|+ |.+|+.++.+|+..|. ++.+++.+.-+...+.++ +......-+++.+
T Consensus 24 kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 24 RLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 456788999995 8999999999999994 577777654433333221 2222223345556
Q ss_pred EccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 66 ~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
...++ ++...++++++|+||.+.-. . +...-..+-++|.+. ++ .+|+.|..
T Consensus 103 ~~~l~-~~n~~~ll~~~DlVvD~~D~--------~------~~~~r~~ln~~c~~~-~i-P~V~~~~~ 153 (287)
T PRK08223 103 PEGIG-KENADAFLDGVDVYVDGLDF--------F------EFDARRLVFAACQQR-GI-PALTAAPL 153 (287)
T ss_pred ecccC-ccCHHHHHhCCCEEEECCCC--------C------cHHHHHHHHHHHHHc-CC-CEEEEecc
Confidence 65665 45677888999999865311 0 112224456677777 54 47776553
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0027 Score=47.86 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=44.4
Q ss_pred CeEEEECCccHHHHHHHHHHHH-CCCeEEEE-ecCCCCh--hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLS-RGYTVKAS-VRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~-~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
+||.|.|++|-.|+.+++.+.+ .|+++.+. +|+++.. .......... ...+.-.++++++++.+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~---------~~~~~v~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG---------PLGVPVTDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS---------T-SSBEBS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC---------CcccccchhHHHhcccCCEE
Confidence 5899999999999999999999 57886554 5554221 1111111110 01112236788888889999
Q ss_pred EEcc
Q 020266 86 CHTA 89 (328)
Q Consensus 86 ih~a 89 (328)
|.+.
T Consensus 72 IDfT 75 (124)
T PF01113_consen 72 IDFT 75 (124)
T ss_dssp EEES
T ss_pred EEcC
Confidence 9875
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0036 Score=51.42 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=54.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh------------------hhhccCCCCcEEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH------------------LLALDGASERLQLFK 66 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 66 (328)
.++.++|+|.|+ |.+|+.++..|+..|. ++++++++.-+...+.+ .+.......+++.+.
T Consensus 18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 456788999997 8899999999999997 68888887222221111 111111223455666
Q ss_pred ccCCCcCchHHhhCCccEEEEc
Q 020266 67 ANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 67 ~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
.+++. +.+.++++++|+||-+
T Consensus 97 ~~i~~-~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 97 EKITE-ENIDKFFKDADIVCEA 117 (200)
T ss_pred eeCCH-hHHHHHhcCCCEEEEC
Confidence 66653 5677788899999976
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=55.55 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=35.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhh
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR 50 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 50 (328)
|+|.|+||+|.+|..++..|.+.|++|.+.+|++++...+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~ 41 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAA 41 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHH
Confidence 47999999999999999999999999999999876655443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0035 Score=56.94 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=68.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCC-------------------CChhhhhhhhhccCCCCcEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP-------------------NDPKKTRHLLALDGASERLQLF 65 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 65 (328)
.++.++|+|.|+ |.+|+.++..|+..|. ++.+++++. .+.+.+.+.+......-+++.+
T Consensus 132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~ 210 (376)
T PRK08762 132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV 210 (376)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 345788999985 8899999999999996 688888763 2222222333222222344455
Q ss_pred EccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 66 ~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
...+++ +.+.++++++|+||++... . ..-..+-++|.+. ++ .+|+.+..
T Consensus 211 ~~~~~~-~~~~~~~~~~D~Vv~~~d~--------~--------~~r~~ln~~~~~~-~i-p~i~~~~~ 259 (376)
T PRK08762 211 QERVTS-DNVEALLQDVDVVVDGADN--------F--------PTRYLLNDACVKL-GK-PLVYGAVF 259 (376)
T ss_pred eccCCh-HHHHHHHhCCCEEEECCCC--------H--------HHHHHHHHHHHHc-CC-CEEEEEec
Confidence 544443 4567778899999988632 1 1112355677776 54 48887764
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.003 Score=55.56 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=70.1
Q ss_pred EEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 12 VCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
|.|+|+ |.+|..++..|+..|. +|+.++++++............ .......+.. -.+.. .++++|+||.+
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~-----t~d~~-~l~dADiVIit 73 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG-----TNDYE-DIAGSDVVVIT 73 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEE-----cCCHH-HhCCCCEEEEe
Confidence 568998 9999999999988876 9999999876443222111111 0011112111 11233 46889999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
++......... .+.+..|+.-.+.+++.+.+......+|.+|-
T Consensus 74 ~g~p~~~~~~r-~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 74 AGIPRKPGMSR-DDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred cCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 98644332222 25666788888888888888743344555554
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0038 Score=57.49 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=35.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
++|+|.|+| .|++|..++..|++.||+|+++++++++.+.
T Consensus 2 ~~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~~v~~ 41 (415)
T PRK11064 2 SFETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQHAVDT 41 (415)
T ss_pred CccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 357899998 6999999999999999999999998776554
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0041 Score=52.90 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=67.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh-------------------hhhccCCCCcEEEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-------------------LLALDGASERLQLFK 66 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 66 (328)
.+.++|+|.|+ |.+|+.+++.|+..|. ++.+++.+.-+...+.+ .+......-+++.+.
T Consensus 30 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 30 LKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred hcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 35789999997 9999999999999994 67777765443333322 122222233455666
Q ss_pred ccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 67 ~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
..++ .+...++++++|+||.+.-. ...-..+-++|.+. +. .+|+.++
T Consensus 109 ~~i~-~~~~~~~~~~~DiVi~~~D~----------------~~~r~~ln~~~~~~-~i-p~v~~~~ 155 (245)
T PRK05690 109 ARLD-DDELAALIAGHDLVLDCTDN----------------VATRNQLNRACFAA-KK-PLVSGAA 155 (245)
T ss_pred ccCC-HHHHHHHHhcCCEEEecCCC----------------HHHHHHHHHHHHHh-CC-EEEEeee
Confidence 5554 34566778899999987521 11223455667776 54 4777555
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0036 Score=56.29 Aligned_cols=108 Identities=15% Similarity=0.069 Sum_probs=68.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh-------------------hhhccCCCCcEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-------------------LLALDGASERLQLF 65 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 65 (328)
.++..+|+|.|+ |.+|+.+++.|+..|. ++.+++.+.-+...+.+ .+......-+++.+
T Consensus 25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 445789999996 9999999999999995 67777765433322222 22222223345556
Q ss_pred EccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 66 ~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
...++. +...++++++|+||.+.-. ...-..+-++|.+. ++ .+|+.++.
T Consensus 104 ~~~i~~-~~~~~~~~~~DvVvd~~d~----------------~~~r~~~n~~c~~~-~i-p~v~~~~~ 152 (355)
T PRK05597 104 VRRLTW-SNALDELRDADVILDGSDN----------------FDTRHLASWAAARL-GI-PHVWASIL 152 (355)
T ss_pred EeecCH-HHHHHHHhCCCEEEECCCC----------------HHHHHHHHHHHHHc-CC-CEEEEEEe
Confidence 566653 4556678899999987631 11222345677776 54 47877663
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=51.75 Aligned_cols=57 Identities=28% Similarity=0.281 Sum_probs=47.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
...+++|+|+|+++.+|..+++.|.++|.+|.+..|+. +++.+.+.++|+|
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-----------------------------~~l~~~l~~aDiV 91 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-----------------------------KNLKEHTKQADIV 91 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-----------------------------hhHHHHHhhCCEE
Confidence 35689999999977899999999999999998888763 2345567789999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|.+.+.
T Consensus 92 Isat~~ 97 (168)
T cd01080 92 IVAVGK 97 (168)
T ss_pred EEcCCC
Confidence 988765
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0056 Score=49.14 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=52.0
Q ss_pred eEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhh------------------hhhhccCCCCcEEEEEccCCC
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTR------------------HLLALDGASERLQLFKANLLE 71 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~------------------~~~~~~~~~~~~~~~~~Dl~~ 71 (328)
+|+|.|+ |.+|+.+++.|+..|. ++++++.+.-+...+. +.+.......+++.+...++.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 5899995 9999999999999996 5888887652222221 222222223355566666544
Q ss_pred cCchHHhhCCccEEEEcc
Q 020266 72 EGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 72 ~~~~~~~~~~~d~vih~a 89 (328)
+.+.+.++++|+||.+.
T Consensus 80 -~~~~~~l~~~DlVi~~~ 96 (174)
T cd01487 80 -NNLEGLFGDCDIVVEAF 96 (174)
T ss_pred -hhHHHHhcCCCEEEECC
Confidence 55777888999999874
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0047 Score=52.29 Aligned_cols=108 Identities=14% Similarity=0.137 Sum_probs=67.4
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhh-------------------hhccCCCCcEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLF 65 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 65 (328)
..+..+|+|.|+ |.+|+.+++.|+..|. ++++++.+.-+...+.++ +......-+++.+
T Consensus 21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 345788999995 9999999999999994 677777765444333222 1111222344454
Q ss_pred EccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 66 ~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
...++ .+.+.++++++|+||.+.-. ...-..+-++|.+. ++ .+|+.++.
T Consensus 100 ~~~i~-~~~~~~~~~~~DlVvd~~D~----------------~~~r~~ln~~~~~~-~i-p~v~~~~~ 148 (240)
T TIGR02355 100 NAKLD-DAELAALIAEHDIVVDCTDN----------------VEVRNQLNRQCFAA-KV-PLVSGAAI 148 (240)
T ss_pred eccCC-HHHHHHHhhcCCEEEEcCCC----------------HHHHHHHHHHHHHc-CC-CEEEEEec
Confidence 44443 34567788889999987531 12223455677776 55 47776553
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.001 Score=52.82 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=48.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
|++|.++| .|-.|+.+++.|++.|++|.+.+|++++.+.+... .++. .++..++++++|+||-+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~--------g~~~-------~~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA--------GAEV-------ADSPAEAAEQADVVILC 64 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT--------TEEE-------ESSHHHHHHHBSEEEE-
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh--------hhhh-------hhhhhhHhhcccceEee
Confidence 67899999 59999999999999999999999998776654432 2222 25677778888999876
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
-
T Consensus 65 v 65 (163)
T PF03446_consen 65 V 65 (163)
T ss_dssp S
T ss_pred c
Confidence 4
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=55.76 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=47.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC-CCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+++|.|+|++|.+|+.+++.+.+. +.++.++ +++.+..... -..++...+++.++++++|+||
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~---------------~~~~i~~~~dl~~ll~~~DvVi 65 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ---------------GALGVAITDDLEAVLADADVLI 65 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc---------------CCCCccccCCHHHhccCCCEEE
Confidence 368999999999999999998875 6887765 4454332210 1124444566777777899999
Q ss_pred EccC
Q 020266 87 HTAS 90 (328)
Q Consensus 87 h~a~ 90 (328)
+++.
T Consensus 66 d~t~ 69 (257)
T PRK00048 66 DFTT 69 (257)
T ss_pred ECCC
Confidence 8874
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0082 Score=46.50 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=65.8
Q ss_pred eEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh-------------------hhhccCCCCcEEEEEccCC
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-------------------LLALDGASERLQLFKANLL 70 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~Dl~ 70 (328)
+|+|.|+ |.+|+.+++.|...|. ++.+++.+.-+...+.+ .+......-+++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 5899996 9999999999999996 68888765433322221 2222222234555555555
Q ss_pred CcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 71 EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 71 ~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
+.. ..+.++++|+||.+... ......+.+.|++. +. .+|..++.
T Consensus 80 ~~~-~~~~~~~~diVi~~~d~----------------~~~~~~l~~~~~~~-~i-~~i~~~~~ 123 (143)
T cd01483 80 EDN-LDDFLDGVDLVIDAIDN----------------IAVRRALNRACKEL-GI-PVIDAGGL 123 (143)
T ss_pred hhh-HHHHhcCCCEEEECCCC----------------HHHHHHHHHHHHHc-CC-CEEEEcCC
Confidence 432 35667889999987532 22344567788887 54 47777774
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0018 Score=56.07 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=50.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++|+++|+|+ |.+|++++..|++.|++|.+..|+.++...+....... ..+.....| + ....++|+||+
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~---~~~~~~~~~--~-----~~~~~~DivIn 184 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRY---GEIQAFSMD--E-----LPLHRVDLIIN 184 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc---CceEEechh--h-----hcccCccEEEE
Confidence 4788999998 89999999999999999999999876655544433211 112222111 1 12346899999
Q ss_pred ccCC
Q 020266 88 TASP 91 (328)
Q Consensus 88 ~a~~ 91 (328)
+.+.
T Consensus 185 atp~ 188 (270)
T TIGR00507 185 ATSA 188 (270)
T ss_pred CCCC
Confidence 9865
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0014 Score=61.24 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=58.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHH-hhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-IVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~vi 86 (328)
.+++|+|.|+ |.+|+.+++.|.+.|++|++++++++..+.+... ..++.++.||.++++.+.+ -++++|.||
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~------~~~~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE------LPNTLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH------CCCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence 3688999997 9999999999999999999999987765543332 1357789999999887754 345789888
Q ss_pred Ecc
Q 020266 87 HTA 89 (328)
Q Consensus 87 h~a 89 (328)
-+.
T Consensus 303 ~~~ 305 (453)
T PRK09496 303 ALT 305 (453)
T ss_pred ECC
Confidence 543
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0082 Score=55.16 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=98.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC---C--CeE--EEEecC--CCChhhhhhhhh-cc-CCCCcEEEEEccCCCcCchHH
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR---G--YTV--KASVRD--PNDPKKTRHLLA-LD-GASERLQLFKANLLEEGSFDS 77 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~---g--~~V--~~~~r~--~~~~~~~~~~~~-~~-~~~~~~~~~~~Dl~~~~~~~~ 77 (328)
.-+|+||||+|.||.+|+-.+++- | ..| ..++.. .+..+.....+. .. +....+... . +..+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~------~~~e 195 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-T------DLDV 195 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-E------CCHH
Confidence 567999999999999999888752 3 233 444442 233322222111 11 111123332 1 1245
Q ss_pred hhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecc-hhhhccCCCCCCCCccccCCCCC
Q 020266 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSS-MAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 78 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS-~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
.++++|+||-+||.......+ ..+.++.|+.-.+.+.++..+... ..+++.+.| -.-+. ........ |.
T Consensus 196 a~~daDvvIitag~prk~G~~-R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~-------t~i~~k~a-pg 266 (452)
T cd05295 196 AFKDAHVIVLLDDFLIKEGED-LEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLK-------TSILIKYA-PS 266 (452)
T ss_pred HhCCCCEEEECCCCCCCcCCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHH-------HHHHHHHc-CC
Confidence 678899999999975443333 348899999999999999888733 135555554 11000 00000000 00
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCC
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL 202 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~ 202 (328)
-| ..+..+.+....-++....+++.+++..-|+-..|.|...
T Consensus 267 iP-----~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG 308 (452)
T cd05295 267 IP-----RKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIG 308 (452)
T ss_pred CC-----HHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccC
Confidence 00 1123445555555666666777788888887778888643
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0017 Score=53.45 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=35.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
.+++|+|+|+|. |-+|+++++.|.+.|++|++.+++++....
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~ 66 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEAVAR 66 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 456899999997 799999999999999999998887654333
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0057 Score=51.55 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=69.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhh--------------------hhccCCCCcEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL--------------------LALDGASERLQL 64 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~--------------------~~~~~~~~~~~~ 64 (328)
..+..+|+|.|+ |.+|+++++.|+..|. ++++++.+..+...+.++ +......-+++.
T Consensus 24 ~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~ 102 (231)
T PRK08328 24 KLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIET 102 (231)
T ss_pred HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEE
Confidence 345778999995 8999999999999994 677877654433332211 111112234555
Q ss_pred EEccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhcc
Q 020266 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 65 ~~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~ 138 (328)
+...++ .+.+.++++++|+||.+.-. ...-..+-++|++. +. .+|+.++. ..+|
T Consensus 103 ~~~~~~-~~~~~~~l~~~D~Vid~~d~----------------~~~r~~l~~~~~~~-~i-p~i~g~~~-g~~G 156 (231)
T PRK08328 103 FVGRLS-EENIDEVLKGVDVIVDCLDN----------------FETRYLLDDYAHKK-GI-PLVHGAVE-GTYG 156 (231)
T ss_pred EeccCC-HHHHHHHHhcCCEEEECCCC----------------HHHHHHHHHHHHHc-CC-CEEEEeec-cCEE
Confidence 555553 34567788889999987532 11112344567776 54 47887774 3543
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0058 Score=51.30 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=66.5
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh-------------------hhhccCCCCcEEE
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-------------------LLALDGASERLQL 64 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~ 64 (328)
..++..+|+|.|+ |.+|+++++.|+..|. ++++++.+.-+...+.+ .+.......+++.
T Consensus 7 ~~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~ 85 (231)
T cd00755 7 EKLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDA 85 (231)
T ss_pred HHHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 3455788999995 9999999999999995 67777765433333222 1222222234555
Q ss_pred EEccCCCcCchHHhhC-CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 65 FKANLLEEGSFDSIVD-GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 65 ~~~Dl~~~~~~~~~~~-~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
+...++ ++...+++. ++|+||.+.-. ...-..|.+.|++. +. .+|...+.
T Consensus 86 ~~~~i~-~~~~~~l~~~~~D~VvdaiD~----------------~~~k~~L~~~c~~~-~i-p~I~s~g~ 136 (231)
T cd00755 86 VEEFLT-PDNSEDLLGGDPDFVVDAIDS----------------IRAKVALIAYCRKR-KI-PVISSMGA 136 (231)
T ss_pred eeeecC-HhHHHHHhcCCCCEEEEcCCC----------------HHHHHHHHHHHHHh-CC-CEEEEeCC
Confidence 555554 344555554 68999987421 22234567888886 54 46665553
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0049 Score=48.55 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=30.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEe
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV 40 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 40 (328)
.+++++|+|.|| |-+|...++.|++.|++|++++
T Consensus 10 ~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc
Confidence 446899999996 9999999999999999999884
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0087 Score=51.31 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=66.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhh-------------------hhhccCCCCcEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRH-------------------LLALDGASERLQLF 65 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 65 (328)
.++..+|+|.|+ |.+|+++++.|+..| .++++++.+......+.+ .+.......+++.+
T Consensus 27 kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i 105 (268)
T PRK15116 27 LFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV 105 (268)
T ss_pred HhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence 456788999995 999999999999999 678888765433222222 11111112234444
Q ss_pred EccCCCcCchHHhhC-CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 66 KANLLEEGSFDSIVD-GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 66 ~~Dl~~~~~~~~~~~-~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
. +..+++...+++. ++|+||.+... +..-..|.+.|++. +. .+|..+++
T Consensus 106 ~-~~i~~e~~~~ll~~~~D~VIdaiD~----------------~~~k~~L~~~c~~~-~i-p~I~~gGa 155 (268)
T PRK15116 106 D-DFITPDNVAEYMSAGFSYVIDAIDS----------------VRPKAALIAYCRRN-KI-PLVTTGGA 155 (268)
T ss_pred e-cccChhhHHHHhcCCCCEEEEcCCC----------------HHHHHHHHHHHHHc-CC-CEEEECCc
Confidence 2 3334556666664 68999987532 12233577788886 55 46666554
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0059 Score=55.14 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=69.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhh-------------------hhccCCCCcEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLF 65 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 65 (328)
..+..+|+|.|+ |.+|..++..|+..|. ++++++.+.-+...+.++ +......-+++.+
T Consensus 38 ~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 38 RLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 345778999995 8999999999999994 788888764333333221 2222222345666
Q ss_pred EccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 66 ~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
...++ .+...++++++|+||.|.-. ...-..+-++|.+. +. .+|+.+..
T Consensus 117 ~~~i~-~~~~~~~~~~~DlVid~~Dn----------------~~~r~~in~~~~~~-~i-P~v~~~~~ 165 (370)
T PRK05600 117 RERLT-AENAVELLNGVDLVLDGSDS----------------FATKFLVADAAEIT-GT-PLVWGTVL 165 (370)
T ss_pred eeecC-HHHHHHHHhCCCEEEECCCC----------------HHHHHHHHHHHHHc-CC-CEEEEEEe
Confidence 66665 34577788899999987532 22223445667776 54 36777663
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00052 Score=55.66 Aligned_cols=81 Identities=16% Similarity=0.087 Sum_probs=43.6
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEE-----EE-EccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ-----LF-KANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~-~~Dl~~~~~~~~~~~~~d 83 (328)
|+|.|.| .|++|..++..|++.||+|++++.+++..+.+.+-..... .+++. .+ .+.++-..+....++++|
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~-E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIY-EPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS--CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhcccccc-ccchhhhhccccccccchhhhhhhhhhhccc
Confidence 6899997 7999999999999999999999988765444332110000 00000 00 012222245666677789
Q ss_pred EEEEccCCC
Q 020266 84 GVCHTASPF 92 (328)
Q Consensus 84 ~vih~a~~~ 92 (328)
++|-|.+..
T Consensus 79 v~~I~VpTP 87 (185)
T PF03721_consen 79 VVFICVPTP 87 (185)
T ss_dssp EEEE----E
T ss_pred eEEEecCCC
Confidence 999887653
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0027 Score=54.99 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=45.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.++|+|+|.|++|.+|+.++..|++.|.+|++..|.. .++.+.++++|+||
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t-----------------------------~~L~~~~~~aDIvI 207 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT-----------------------------QNLPELVKQADIIV 207 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc-----------------------------hhHHHHhccCCEEE
Confidence 4689999999999999999999999999988887732 12334457899999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
++.|.
T Consensus 208 ~AtG~ 212 (283)
T PRK14192 208 GAVGK 212 (283)
T ss_pred EccCC
Confidence 99863
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.014 Score=51.18 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=73.0
Q ss_pred EECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 14 VTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 14 VtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|+ |.+|..++-.|+..+ .++..+++..+..+.....+... .....++...+| .+.++++|+||-+|
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-------~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD-------YSDCKDADLVVITA 72 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC-------HHHHCCCCEEEECC
Confidence 4564 999999999998877 47889998776555433322211 111223332111 34677899999999
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 90 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|.......+. .+.++.|+.-.+.+.+.+.++.....+|.+|-
T Consensus 73 g~~rk~g~~R-~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 73 GAPQKPGETR-LELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 9754433333 48889999999999999888744445666665
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0016 Score=58.12 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=44.3
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEE---EEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVK---ASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
+|+|.||||++|+.|++.|.+++|.+. .+.+.......+. . .+......|+. . ..++++|+||-
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~----~----~~~~~~~~~~~----~-~~~~~~D~v~~ 67 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT----F----KGKELEVNEAK----I-ESFEGIDIALF 67 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee----e----CCeeEEEEeCC----h-HHhcCCCEEEE
Confidence 589999999999999999999887654 3445543332221 0 12344445553 1 23468999998
Q ss_pred ccCC
Q 020266 88 TASP 91 (328)
Q Consensus 88 ~a~~ 91 (328)
+++.
T Consensus 68 a~g~ 71 (339)
T TIGR01296 68 SAGG 71 (339)
T ss_pred CCCH
Confidence 8763
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0047 Score=49.85 Aligned_cols=70 Identities=23% Similarity=0.241 Sum_probs=50.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
...+++|.|.| .|-||+.+++.|..-|.+|++.+|+.......... .+ ...+++++++.+|+|
T Consensus 33 ~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~--------~~--------~~~~l~ell~~aDiv 95 (178)
T PF02826_consen 33 ELRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF--------GV--------EYVSLDELLAQADIV 95 (178)
T ss_dssp -STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT--------TE--------EESSHHHHHHH-SEE
T ss_pred ccCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhhcccc--------cc--------eeeehhhhcchhhhh
Confidence 45689999999 59999999999999999999999987754411110 12 224677888889999
Q ss_pred EEccCCC
Q 020266 86 CHTASPF 92 (328)
Q Consensus 86 ih~a~~~ 92 (328)
+.+....
T Consensus 96 ~~~~plt 102 (178)
T PF02826_consen 96 SLHLPLT 102 (178)
T ss_dssp EE-SSSS
T ss_pred hhhhccc
Confidence 8877643
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0018 Score=56.33 Aligned_cols=69 Identities=22% Similarity=0.193 Sum_probs=50.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+++++|+|. |.+|+.+++.|...|.+|++..|++.+...... .+...+ +.+++.+.++++|+||
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~--------~g~~~~-----~~~~l~~~l~~aDiVi 214 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLARITE--------MGLIPF-----PLNKLEEKVAEIDIVI 214 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------CCCeee-----cHHHHHHHhccCCEEE
Confidence 45789999997 889999999999999999999998654322111 011211 2345667788999999
Q ss_pred Ecc
Q 020266 87 HTA 89 (328)
Q Consensus 87 h~a 89 (328)
++.
T Consensus 215 nt~ 217 (287)
T TIGR02853 215 NTI 217 (287)
T ss_pred ECC
Confidence 976
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0028 Score=59.11 Aligned_cols=76 Identities=18% Similarity=0.100 Sum_probs=50.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-CccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-GCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~v 85 (328)
+++|+|+|||++| +|...++.|++.|++|.+.+++..........+.. .++.+..++.. . .++. ++|.|
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~----~g~~~~~~~~~--~---~~~~~~~d~v 72 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLE----EGIKVICGSHP--L---ELLDEDFDLM 72 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHh----cCCEEEeCCCC--H---HHhcCcCCEE
Confidence 3578999999988 99999999999999999998765432221111111 13444443311 1 1233 48999
Q ss_pred EEccCCC
Q 020266 86 CHTASPF 92 (328)
Q Consensus 86 ih~a~~~ 92 (328)
|..+|..
T Consensus 73 V~s~gi~ 79 (447)
T PRK02472 73 VKNPGIP 79 (447)
T ss_pred EECCCCC
Confidence 9999864
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0024 Score=59.06 Aligned_cols=67 Identities=19% Similarity=0.380 Sum_probs=48.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|.|+||+|.+|..+++.|.+.|++|.+.+|+++......... ++.. ..+..+.+.++|+||-+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~-------gv~~-------~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL-------GVEY-------ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc-------CCee-------ccCHHHHhccCCEEEEec
Confidence 47999999999999999999999999999999865533322211 1211 123455677889998765
Q ss_pred C
Q 020266 90 S 90 (328)
Q Consensus 90 ~ 90 (328)
.
T Consensus 67 p 67 (437)
T PRK08655 67 P 67 (437)
T ss_pred C
Confidence 3
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0031 Score=54.86 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=53.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.+.++|+|.|+ |..|++++..|...|. +|.+++|+..+.+.+...+.... +...+.. .+++.+.+.++|+|
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~~-----~~~~~~~~~~aDiV 196 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF--PAARATA-----GSDLAAALAAADGL 196 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC--CCeEEEe-----ccchHhhhCCCCEE
Confidence 35689999996 8899999999999996 79999999877777655442221 1122221 12344456779999
Q ss_pred EEcc
Q 020266 86 CHTA 89 (328)
Q Consensus 86 ih~a 89 (328)
|++.
T Consensus 197 InaT 200 (284)
T PRK12549 197 VHAT 200 (284)
T ss_pred EECC
Confidence 9995
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0026 Score=57.49 Aligned_cols=76 Identities=12% Similarity=0.057 Sum_probs=55.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
...++|+|+|+ |-+|...++.|...|.+|.+++|++.+.+.+..... ..+..+..+++.+.+.+.++|+||
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g--------~~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFG--------GRIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcC--------ceeEeccCCHHHHHHHHccCCEEE
Confidence 34678999987 999999999999999999999998655444332211 112234455667788888999999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
+++..
T Consensus 236 ~a~~~ 240 (370)
T TIGR00518 236 GAVLI 240 (370)
T ss_pred Ecccc
Confidence 98754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.012 Score=51.70 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=69.6
Q ss_pred eEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhh-------------------hhccCCCCcEEEEEccCC
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLFKANLL 70 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~Dl~ 70 (328)
+|||.|+ |.+|..+++.|+..|. ++.+++.+.-+...+.++ +......-+++.+..++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 5899996 9999999999999994 577777655443333222 122222345677778887
Q ss_pred CcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhcc
Q 020266 71 EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 71 ~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~ 138 (328)
+.....+.++++|+||.+.- |...-..+-+.|... ++ .+|..++.+ ++|
T Consensus 80 ~~~~~~~f~~~~DvVv~a~D----------------n~~ar~~in~~c~~~-~i-p~I~~gt~G-~~G 128 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALD----------------NLAARRHVNKMCLAA-DV-PLIESGTTG-FLG 128 (312)
T ss_pred CccchHHHHhcCCEEEECCC----------------CHHHHHHHHHHHHHC-CC-CEEEEecCc-cee
Confidence 75445577889999997642 222234455666666 54 477777643 443
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.004 Score=55.36 Aligned_cols=83 Identities=19% Similarity=0.132 Sum_probs=56.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEE-EEE---cc--CCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ-LFK---AN--LLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~---~D--l~~~~~~~~~~~~~d 83 (328)
|+|.|.| ||++|--.+..|++.||+|++++.++++-+.+..-..... .++++ +++ .+ ++--.+.+++++..|
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~-EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIY-EPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCc-CccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 5799999 7999999999999999999999998877665543221111 11111 010 11 222245777888899
Q ss_pred EEEEccCCCCC
Q 020266 84 GVCHTASPFYH 94 (328)
Q Consensus 84 ~vih~a~~~~~ 94 (328)
++|-+.|-.+.
T Consensus 79 v~fIavgTP~~ 89 (414)
T COG1004 79 VVFIAVGTPPD 89 (414)
T ss_pred EEEEEcCCCCC
Confidence 99998875443
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0055 Score=59.78 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=70.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhh------------------hhhccCCCCcEEEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRH------------------LLALDGASERLQLFK 66 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 66 (328)
.+..+|+|.|+ | +|++++.+|+..|. ++++++.+.-+..++.+ .+......-+++.+.
T Consensus 105 L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 105 LGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 45788999999 8 99999999999984 78887765443333322 122222234567777
Q ss_pred ccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 67 ~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
..++ ++.+.++++++|+||.|.= |+..=..+-++|.+. +.. +|+-++.
T Consensus 183 ~~i~-~~n~~~~l~~~DlVvD~~D----------------~~~~R~~ln~~a~~~-~iP-~i~~~~~ 230 (722)
T PRK07877 183 DGLT-EDNVDAFLDGLDVVVEECD----------------SLDVKVLLREAARAR-RIP-VLMATSD 230 (722)
T ss_pred ccCC-HHHHHHHhcCCCEEEECCC----------------CHHHHHHHHHHHHHc-CCC-EEEEcCC
Confidence 7776 5678889999999998752 122222444677776 554 7776653
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0015 Score=51.56 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=49.9
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
||.|.|| |-.|.+++..|.++|++|....|+++..+.+..........+.+..- ..+.-..++.++++++|+||-+.
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~-~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLP-ENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEE-TTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccC-cccccccCHHHHhCcccEEEecc
Confidence 5899995 99999999999999999999999876555544332211111121111 11111256788889999998654
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0034 Score=56.04 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=23.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY 34 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~ 34 (328)
.++|+|.||||++|..|++.|.+++|
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~h 32 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDF 32 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCC
Confidence 46899999999999999999998776
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.015 Score=43.70 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=43.2
Q ss_pred eEEEECCccHHHHHHHHHHHHC-CCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 11 VVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
++.|+|++|.+|..+++.|.+. ++++.++ .|+.+..+..... .+++..+..+..+.+.+. ..++|+||-+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~DvV~~~ 72 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEA------GPHLKGEVVLELEPEDFE--ELAVDIVFLA 72 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHH------CcccccccccccccCChh--hcCCCEEEEc
Confidence 5899999999999999999995 7888887 4443222222221 112221111122223333 2478999887
Q ss_pred cCC
Q 020266 89 ASP 91 (328)
Q Consensus 89 a~~ 91 (328)
.+.
T Consensus 73 ~~~ 75 (122)
T smart00859 73 LPH 75 (122)
T ss_pred CCc
Confidence 653
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0026 Score=47.22 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=53.6
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEEccC
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHTAS 90 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~a~ 90 (328)
|+|.|. |-+|..+++.|.+.+.+|.++++++...+.+... .+.++.||.++++.++++ +++++.|+=+..
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence 578886 7899999999999777999999998765554332 478999999999887764 347888886653
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0016 Score=56.95 Aligned_cols=68 Identities=22% Similarity=0.205 Sum_probs=50.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
.+++|+|+|. |.+|+.++..|...|.+|.+.+|++........ . +.+++ ..+++.+.+.++|+||+
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~----G~~~~-----~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLARITE----M----GLSPF-----HLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----c----CCeee-----cHHHHHHHhCCCCEEEE
Confidence 4789999996 889999999999999999999998654322111 1 22222 22456677889999999
Q ss_pred cc
Q 020266 88 TA 89 (328)
Q Consensus 88 ~a 89 (328)
++
T Consensus 217 t~ 218 (296)
T PRK08306 217 TI 218 (296)
T ss_pred CC
Confidence 75
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0089 Score=52.81 Aligned_cols=80 Identities=23% Similarity=0.120 Sum_probs=51.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhh----ccC-CCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA----LDG-ASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
.++|.|+|+ |-+|+.++..|+..|++|++.+++++........+. ... ...........++-..++.+++.++|
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 578999995 999999999999999999999998765443222110 000 00000001112222245777888999
Q ss_pred EEEEcc
Q 020266 84 GVCHTA 89 (328)
Q Consensus 84 ~vih~a 89 (328)
+|+-+.
T Consensus 86 lViEav 91 (321)
T PRK07066 86 FIQESA 91 (321)
T ss_pred EEEECC
Confidence 999875
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0038 Score=56.69 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=53.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
||+|+|.|+ |.+|+.++..+.+.|++|++++.++..+.. .. .-.++.+|..|.+.+.++++.+|+|..
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~---~~-------ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAA---QV-------ADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchh---Hh-------CceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 578999997 899999999999999999999987654322 00 123566888999999999999998753
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0032 Score=55.05 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=29.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDP 43 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~ 43 (328)
+|+||.|.||+|+.|..|++.|..+. .++.....+.
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~ 37 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRE 37 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechh
Confidence 36789999999999999999999885 5666555444
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0031 Score=57.78 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=55.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
..++++|+|.|+ |..|+.++..|.+.| .++++..|+.++...+...++ ... ....+++.+.+..+|+
T Consensus 178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~------~~~-----~~~~~~l~~~l~~aDi 245 (414)
T PRK13940 178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR------NAS-----AHYLSELPQLIKKADI 245 (414)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc------CCe-----EecHHHHHHHhccCCE
Confidence 356789999996 999999999999999 478999998776665544321 111 2223456777888999
Q ss_pred EEEccCCC
Q 020266 85 VCHTASPF 92 (328)
Q Consensus 85 vih~a~~~ 92 (328)
||++.+..
T Consensus 246 VI~aT~a~ 253 (414)
T PRK13940 246 IIAAVNVL 253 (414)
T ss_pred EEECcCCC
Confidence 99998753
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0033 Score=57.03 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=32.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (328)
.+++|.|.||+|.+|..++..|.+.|++|.+.+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 35789999999999999999999999999999985
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0054 Score=53.01 Aligned_cols=73 Identities=23% Similarity=0.227 Sum_probs=47.7
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHC--CCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSR--GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG 81 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (328)
++|++++|.|.| .|.||+.+++.|.+. ++++.++ +|++++...+..... -..-..++++++.+
T Consensus 2 ~~m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g-------------~~~~~~~~eell~~ 67 (271)
T PRK13302 2 SSRPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLR-------------RPPPVVPLDQLATH 67 (271)
T ss_pred CCCCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcC-------------CCcccCCHHHHhcC
Confidence 335568899999 599999999999873 6887654 555544433322211 00112456666778
Q ss_pred ccEEEEccCC
Q 020266 82 CDGVCHTASP 91 (328)
Q Consensus 82 ~d~vih~a~~ 91 (328)
+|+|+-++..
T Consensus 68 ~D~Vvi~tp~ 77 (271)
T PRK13302 68 ADIVVEAAPA 77 (271)
T ss_pred CCEEEECCCc
Confidence 9999988753
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0024 Score=57.34 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=30.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPND 45 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~ 45 (328)
+++|+|+||||++|+.|++.|.+.. .++.++.++.+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~ 40 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERS 40 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhh
Confidence 5789999999999999999999875 488887565433
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0062 Score=52.52 Aligned_cols=57 Identities=21% Similarity=0.241 Sum_probs=47.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
...+|+|+|+|+++.+|+.++..|.++|.+|++..+.. .++.+.++++|+|
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-----------------------------~~l~~~~~~ADIV 205 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-----------------------------KDMASYLKDADVI 205 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-----------------------------hhHHHHHhhCCEE
Confidence 35689999999999999999999999999999887642 1355667789999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|.+.|.
T Consensus 206 IsAvg~ 211 (286)
T PRK14175 206 VSAVGK 211 (286)
T ss_pred EECCCC
Confidence 998875
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.02 Score=48.58 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=68.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 86 (328)
|++|+|.|||+ =|+.|++.|.+.|+.|++..-...... ....+..+.|-+.+.+.+.+.++ +++.||
T Consensus 2 ~~~IlvlgGT~-egr~la~~L~~~g~~v~~Svat~~g~~----------~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VI 70 (248)
T PRK08057 2 MPRILLLGGTS-EARALARALAAAGVDIVLSLAGRTGGP----------ADLPGPVRVGGFGGAEGLAAYLREEGIDLVI 70 (248)
T ss_pred CceEEEEechH-HHHHHHHHHHhCCCeEEEEEccCCCCc----------ccCCceEEECCCCCHHHHHHHHHHCCCCEEE
Confidence 67899999997 599999999999998887665543221 12356777888878888998886 799999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccE
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~ 126 (328)
...-++. ..-+.++.++|.+. +.+-
T Consensus 71 DATHPfA--------------~~is~~a~~ac~~~-~ipy 95 (248)
T PRK08057 71 DATHPYA--------------AQISANAAAACRAL-GIPY 95 (248)
T ss_pred ECCCccH--------------HHHHHHHHHHHHHh-CCcE
Confidence 9765432 22356788888887 6653
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0042 Score=54.06 Aligned_cols=77 Identities=21% Similarity=0.118 Sum_probs=52.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++++++|.|+ |..|++++..|.+.|. +|+++.|+.++.+.+...+... ..+.. +...+++...+..+|+|
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~---~~~~~----~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV---GVITR----LEGDSGGLAIEKAAEVL 194 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc---Cccee----ccchhhhhhcccCCCEE
Confidence 35789999996 9999999999999995 6999999987777665543211 11111 11112333455679999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
||+...
T Consensus 195 InaTp~ 200 (282)
T TIGR01809 195 VSTVPA 200 (282)
T ss_pred EECCCC
Confidence 999764
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0062 Score=52.57 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=53.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
++++++|.|| |.-+++++..|++.| .+|.++.|+.++.+.+...+..... .+.. .++.+.+... ..|+||
T Consensus 125 ~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~--~~~~--~~~~~~~~~~----~~dliI 195 (283)
T COG0169 125 TGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA--AVEA--AALADLEGLE----EADLLI 195 (283)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc--cccc--cccccccccc----ccCEEE
Confidence 4689999996 899999999999999 5899999999998887776643321 1111 1222212111 589999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
|+...
T Consensus 196 NaTp~ 200 (283)
T COG0169 196 NATPV 200 (283)
T ss_pred ECCCC
Confidence 99754
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0043 Score=55.19 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=49.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||+|.|.|+ |-+|..++..|++.|++|.+++|+++..+.+.............. ....+.-..+..+.++++|+||-+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIK-LPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCc-CCCCeEEeCCHHHHHhCCCEEEEe
Confidence 357999995 999999999999999999999998665544333210000000000 000111223455667789999877
Q ss_pred cC
Q 020266 89 AS 90 (328)
Q Consensus 89 a~ 90 (328)
..
T Consensus 79 v~ 80 (325)
T PRK00094 79 VP 80 (325)
T ss_pred CC
Confidence 53
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.012 Score=51.24 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=50.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCC---ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPN---DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
.++|+++|.|+ |..+++++..|...|. +|.++.|+.+ +.+.+...+.... ...+.+. ++.+.+.+.+.+.++
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~-~~~~~~~--~~~~~~~l~~~~~~a 197 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVT--DLADQQAFAEALASA 197 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhcc-CceEEEe--chhhhhhhhhhcccC
Confidence 35789999996 6679999999999985 7999999854 4444443332111 1112222 222222244455678
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+|||+...
T Consensus 198 DivINaTp~ 206 (288)
T PRK12749 198 DILTNGTKV 206 (288)
T ss_pred CEEEECCCC
Confidence 999998643
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0039 Score=59.14 Aligned_cols=44 Identities=27% Similarity=0.230 Sum_probs=37.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhh
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRH 51 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~ 51 (328)
+++|+++|+|+ |.+|++++..|.+.|++|.++.|+.++...+..
T Consensus 377 ~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~ 420 (529)
T PLN02520 377 LAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELAD 420 (529)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 56789999998 899999999999999999999998665555443
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.033 Score=51.15 Aligned_cols=129 Identities=13% Similarity=0.055 Sum_probs=72.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhh-------------------hhhhccCCCCcEEEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTR-------------------HLLALDGASERLQLFK 66 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 66 (328)
+...+|+|.|++| +|..+++.|...|. .+++++-+......+. ..+......-+++++.
T Consensus 18 L~~s~VlliG~gg-lGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~ 96 (425)
T cd01493 18 LESAHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVE 96 (425)
T ss_pred HhhCeEEEEcCcH-HHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3467899999755 99999999999995 5777775433322221 1122222223445555
Q ss_pred ccCCCc-CchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCC
Q 020266 67 ANLLEE-GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 67 ~Dl~~~-~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
.++.+. +...+.+++.|+||-+.. + ......|.+.|.+. ++ .+|+.+|.+ .+|.-.-...
T Consensus 97 e~~~~ll~~~~~f~~~fdiVI~t~~--------~--------~~~~~~L~~~c~~~-~i-PlI~~~s~G-~~G~v~v~~~ 157 (425)
T cd01493 97 ESPEALLDNDPSFFSQFTVVIATNL--------P--------ESTLLRLADVLWSA-NI-PLLYVRSYG-LYGYIRIQLK 157 (425)
T ss_pred cccchhhhhHHHHhcCCCEEEECCC--------C--------HHHHHHHHHHHHHc-CC-CEEEEeccc-CEEEEEEEEC
Confidence 554332 123456778898884321 1 11223466777776 65 489999964 6653322222
Q ss_pred CccccCCCCC
Q 020266 146 DVVVDETWFS 155 (328)
Q Consensus 146 ~~~~~E~~~~ 155 (328)
...+.|.+|.
T Consensus 158 ~h~i~et~p~ 167 (425)
T cd01493 158 EHTIVESHPD 167 (425)
T ss_pred CeEEEECCCC
Confidence 3445555443
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0098 Score=57.51 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=57.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 88 (328)
.+|+|.| .|-+|+.+++.|.++|+++++++++++..+...+ .+...+.||.++++.++++ ++++|.||-+
T Consensus 401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 401 PQVIIVG-FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK--------YGYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 5799999 5999999999999999999999998876554332 2577899999999887764 4578888765
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
.
T Consensus 472 ~ 472 (601)
T PRK03659 472 C 472 (601)
T ss_pred e
Confidence 4
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0082 Score=52.46 Aligned_cols=81 Identities=16% Similarity=0.072 Sum_probs=50.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhh----hccCCCCcEEE------EEccCCCcCchHHh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL----ALDGASERLQL------FKANLLEEGSFDSI 78 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~------~~~Dl~~~~~~~~~ 78 (328)
.++|.|.|+ |.+|..++..|+..|++|++.+++++..+...... .......++.. ....++-..++.++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 468999995 99999999999999999999999876544432211 00000000000 00111112456677
Q ss_pred hCCccEEEEccC
Q 020266 79 VDGCDGVCHTAS 90 (328)
Q Consensus 79 ~~~~d~vih~a~ 90 (328)
++++|+||-+..
T Consensus 82 ~~~aDlVieavp 93 (287)
T PRK08293 82 VKDADLVIEAVP 93 (287)
T ss_pred hcCCCEEEEecc
Confidence 889999998764
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.018 Score=51.19 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=34.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
.+.+|+|+||+|.+|..++..+...|.+|+++.++.++.+.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~ 178 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAY 178 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 46799999999999999998888889999999887665444
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.007 Score=56.43 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=51.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEE----Ec-cCCCcCchHHhhCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLF----KA-NLLEEGSFDSIVDG 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~-Dl~~~~~~~~~~~~ 81 (328)
||+|.|.| +|++|..++..|++.| ++|++++.++++.+.+..-..... .+++.-+ .+ .++--.++.+.+++
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~-e~gl~ell~~~~~~~l~~t~~~~~~i~~ 78 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIY-EPGLDEVVKQCRGKNLFFSTDVEKHVAE 78 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccC-CCCHHHHHHHhhcCCEEEEcCHHHHHhc
Confidence 46799997 6999999999999984 889999988776555432211000 0111100 01 12112334556778
Q ss_pred ccEEEEccCCC
Q 020266 82 CDGVCHTASPF 92 (328)
Q Consensus 82 ~d~vih~a~~~ 92 (328)
+|++|-|.+..
T Consensus 79 advi~I~V~TP 89 (473)
T PLN02353 79 ADIVFVSVNTP 89 (473)
T ss_pred CCEEEEEeCCC
Confidence 99999988743
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.014 Score=45.91 Aligned_cols=58 Identities=28% Similarity=0.308 Sum_probs=43.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+|+|.|.+..+|+.|+..|.++|..|........ ++.+..+.+|+||
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~-----------------------------~l~~~~~~ADIVV 84 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK-----------------------------NLQEITRRADIVV 84 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS-----------------------------SHHHHHTTSSEEE
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC-----------------------------cccceeeeccEEe
Confidence 56899999999999999999999999999888665532 3455667789999
Q ss_pred EccCCCC
Q 020266 87 HTASPFY 93 (328)
Q Consensus 87 h~a~~~~ 93 (328)
-.+|...
T Consensus 85 sa~G~~~ 91 (160)
T PF02882_consen 85 SAVGKPN 91 (160)
T ss_dssp E-SSSTT
T ss_pred eeecccc
Confidence 8887643
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.02 Score=47.13 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=48.6
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
-..++|+|+|+|| |-+|...++.|++.|++|+++.+...+ .+..+.. ...+.+..-++. ..-+.++|+
T Consensus 6 l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~~--~l~~l~~----~~~i~~~~~~~~-----~~~l~~adl 73 (202)
T PRK06718 6 IDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELTE--NLVKLVE----EGKIRWKQKEFE-----PSDIVDAFL 73 (202)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCCH--HHHHHHh----CCCEEEEecCCC-----hhhcCCceE
Confidence 3567999999997 999999999999999999999764322 2222211 124555443332 223567888
Q ss_pred EEEcc
Q 020266 85 VCHTA 89 (328)
Q Consensus 85 vih~a 89 (328)
||-+.
T Consensus 74 ViaaT 78 (202)
T PRK06718 74 VIAAT 78 (202)
T ss_pred EEEcC
Confidence 87554
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0052 Score=56.73 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=52.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
..+++|+|+|+ |-+|..+++.|...|. +|++..|+.+....+...+. . +..+.+++.+.+.++|+|
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g-------~-----~~~~~~~~~~~l~~aDvV 246 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG-------G-----EAIPLDELPEALAEADIV 246 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC-------C-----cEeeHHHHHHHhccCCEE
Confidence 45789999996 9999999999999997 78999998766554433321 1 112224456667789999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|.+.+.
T Consensus 247 I~aT~s 252 (423)
T PRK00045 247 ISSTGA 252 (423)
T ss_pred EECCCC
Confidence 998764
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.005 Score=56.72 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
..+++|+|+|+ |-+|..+++.|...| .+|++..|+.++...+...+. ...+. .+++.+.+.++|+|
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g-------~~~i~-----~~~l~~~l~~aDvV 244 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELG-------GEAVK-----FEDLEEYLAEADIV 244 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC-------CeEee-----HHHHHHHHhhCCEE
Confidence 45789999996 999999999999999 789999998765544433221 11221 23566777889999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|.+.+.
T Consensus 245 i~aT~s 250 (417)
T TIGR01035 245 ISSTGA 250 (417)
T ss_pred EECCCC
Confidence 998764
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0091 Score=53.40 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=50.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----Cc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~ 82 (328)
.++++|||.||+|.+|++.++-....|..+++..++.+..+....+ +.. ...|..+++..+.+.+ ++
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l--------GAd-~vvdy~~~~~~e~~kk~~~~~~ 226 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL--------GAD-EVVDYKDENVVELIKKYTGKGV 226 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHc--------CCc-EeecCCCHHHHHHHHhhcCCCc
Confidence 3578999999999999999987777785555555555554432222 111 2245555444444444 59
Q ss_pred cEEEEccCCC
Q 020266 83 DGVCHTASPF 92 (328)
Q Consensus 83 d~vih~a~~~ 92 (328)
|+|++|.+..
T Consensus 227 DvVlD~vg~~ 236 (347)
T KOG1198|consen 227 DVVLDCVGGS 236 (347)
T ss_pred cEEEECCCCC
Confidence 9999999863
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.023 Score=51.94 Aligned_cols=111 Identities=15% Similarity=0.035 Sum_probs=68.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhh-------------------hhccCCCCcEEEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLFK 66 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 66 (328)
++..+|+|.|+ |.+|+.++..|+..|. ++.+++.+.-+...+.++ +......-+++.+.
T Consensus 40 L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 118 (392)
T PRK07878 40 LKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHE 118 (392)
T ss_pred HhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEe
Confidence 45678999995 8999999999999995 577777554333332221 11112223455566
Q ss_pred ccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhcc
Q 020266 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 67 ~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~ 138 (328)
..++. +...++++++|+||.+... ...-..+-++|... ++ .+|+.+.. .++|
T Consensus 119 ~~i~~-~~~~~~~~~~D~Vvd~~d~----------------~~~r~~ln~~~~~~-~~-p~v~~~~~-g~~G 170 (392)
T PRK07878 119 FRLDP-SNAVELFSQYDLILDGTDN----------------FATRYLVNDAAVLA-GK-PYVWGSIY-RFEG 170 (392)
T ss_pred ccCCh-hHHHHHHhcCCEEEECCCC----------------HHHHHHHHHHHHHc-CC-CEEEEEec-cCEE
Confidence 66654 4566788899999976521 11222355677776 54 48887774 4554
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.037 Score=46.57 Aligned_cols=108 Identities=12% Similarity=0.111 Sum_probs=67.2
Q ss_pred eEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhh-------------------hhccCCCCcEEEEEccCC
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLFKANLL 70 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~Dl~ 70 (328)
+|+|.| .|.+|..+++.|+..|. ++.+++.+.-+...+.++ +......-+++.+..++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 589999 59999999999999984 577777654333333222 111122335667777776
Q ss_pred CcCc-hHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhcc
Q 020266 71 EEGS-FDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 71 ~~~~-~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~ 138 (328)
+..+ ....++++|+||.+.- |...-..+-+.|... +. .+|..++. ...|
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~D----------------n~~aR~~ln~~c~~~-~i-plI~~g~~-G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALD----------------NIIARRYVNGMLIFL-IV-PLIESGTE-GFKG 129 (234)
T ss_pred hhhhchHHHHhCCCEEEECCC----------------CHHHHHHHHHHHHHc-CC-CEEEEccc-CCce
Confidence 5433 3456788999997642 233334556667776 54 47877774 3443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0046 Score=49.93 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=31.2
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
+|.|.|| |.+|+.++..++..|++|+.++++++....
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~ 37 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALER 37 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHh
Confidence 5899997 999999999999999999999998775443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0054 Score=54.18 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=52.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
..+++|+|.|+ |-+|..+++.|...| .+|+++.|++++...+...+. ...+ +.+++.+.+..+|+|
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g-------~~~~-----~~~~~~~~l~~aDvV 242 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG-------GNAV-----PLDELLELLNEADVV 242 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC-------CeEE-----eHHHHHHHHhcCCEE
Confidence 35789999997 999999999999876 679999998766555444321 1222 223466677789999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|.+.+.
T Consensus 243 i~at~~ 248 (311)
T cd05213 243 ISATGA 248 (311)
T ss_pred EECCCC
Confidence 998764
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.005 Score=53.71 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=34.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
+++|.|+|+ |.+|..++..|+..|++|++.+++++..+.
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATA 43 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 458999996 999999999999999999999999877554
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0086 Score=55.18 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=50.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEE-----E-EccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQL-----F-KANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~Dl~~~~~~~~~~~~~d 83 (328)
|+|.|.| +|++|..++..|++.||+|++.++++++...+..-.... ..++++- + .+.++-..+..++++++|
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~-~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPI-YEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCC-CCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 3699998 699999999999999999999999877655433211000 0000000 0 011111234556678899
Q ss_pred EEEEccCC
Q 020266 84 GVCHTASP 91 (328)
Q Consensus 84 ~vih~a~~ 91 (328)
+||-+...
T Consensus 79 vvii~vpt 86 (411)
T TIGR03026 79 VIIICVPT 86 (411)
T ss_pred EEEEEeCC
Confidence 99988764
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0082 Score=52.99 Aligned_cols=69 Identities=23% Similarity=0.241 Sum_probs=47.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
+.++|.|+| +|.+|..++..|.+.|+ +|++.+|+++..+..... ++.. .. ..+..+.++++|+|
T Consensus 5 ~~~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~--------g~~~---~~--~~~~~~~~~~aDvV 70 (307)
T PRK07502 5 LFDRVALIG-IGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL--------GLGD---RV--TTSAAEAVKGADLV 70 (307)
T ss_pred CCcEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC--------CCCc---ee--cCCHHHHhcCCCEE
Confidence 356899998 79999999999999884 899999976544332111 1100 01 12345566789999
Q ss_pred EEccC
Q 020266 86 CHTAS 90 (328)
Q Consensus 86 ih~a~ 90 (328)
|.+..
T Consensus 71 iiavp 75 (307)
T PRK07502 71 ILCVP 75 (307)
T ss_pred EECCC
Confidence 98874
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.036 Score=48.91 Aligned_cols=67 Identities=12% Similarity=0.188 Sum_probs=51.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+|.|.| .|-||+.+++.|..-|++|++.+|..+... .+..+ ...+++.++++++|+|+
T Consensus 134 l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~~-------------~~~~~----~~~~~l~e~l~~aDvvv 195 (312)
T PRK15469 134 REDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSWP-------------GVQSF----AGREELSAFLSQTRVLI 195 (312)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCCC-------------Cceee----cccccHHHHHhcCCEEE
Confidence 4688999999 799999999999999999999998654321 11111 13457888999999999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
.+...
T Consensus 196 ~~lPl 200 (312)
T PRK15469 196 NLLPN 200 (312)
T ss_pred ECCCC
Confidence 87653
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.01 Score=51.51 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=47.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
...+|+|.|.|.+|.+|+.++..|+++|++|.+..|... ++.++.+.+|+|
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~-----------------------------~l~e~~~~ADIV 206 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST-----------------------------DAKALCRQADIV 206 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC-----------------------------CHHHHHhcCCEE
Confidence 346899999999999999999999999999999876532 345566778999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|-+.+.
T Consensus 207 Isavg~ 212 (301)
T PRK14194 207 VAAVGR 212 (301)
T ss_pred EEecCC
Confidence 988775
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0044 Score=59.46 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=55.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 88 (328)
.+|+|.|+ |-+|+++++.|.++|++|++++++++..+.+.+ .+...+.||.+|++.++++ ++++|.++=+
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 46899995 999999999999999999999998776555432 2678999999998877653 3578877644
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.051 Score=50.76 Aligned_cols=125 Identities=17% Similarity=0.137 Sum_probs=75.3
Q ss_pred CCeEE----EECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 9 GKVVC----VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 9 ~~~vl----VtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+..++ |+||+|.+|.++++.|...|.+|++..+...+... ....++.-+..|.+..++..+
T Consensus 34 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~------- 98 (450)
T PRK08261 34 GQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAA--------GWGDRFGALVFDATGITDPAD------- 98 (450)
T ss_pred CCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCcccccccc--------CcCCcccEEEEECCCCCCHHH-------
Confidence 34566 88999999999999999999999998765442111 001123323334333332221
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcC-CCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
+.+....++++.+. ....+||+++|.....+
T Consensus 99 -----------------------l~~~~~~~~~~l~~l~~~griv~i~s~~~~~~------------------------- 130 (450)
T PRK08261 99 -----------------------LKALYEFFHPVLRSLAPCGRVVVLGRPPEAAA------------------------- 130 (450)
T ss_pred -----------------------HHHHHHHHHHHHHhccCCCEEEEEccccccCC-------------------------
Confidence 11122223322221 23358999999643210
Q ss_pred CchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCc
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAM 196 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~ 196 (328)
...|+.+|.+.+.+++.++.+. ++.+..+.|+.
T Consensus 131 ~~~~~~akaal~gl~rsla~E~~~gi~v~~i~~~~ 165 (450)
T PRK08261 131 DPAAAAAQRALEGFTRSLGKELRRGATAQLVYVAP 165 (450)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCCEEEEEecCC
Confidence 0229999999999999998874 67777777653
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.022 Score=51.84 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=47.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEE----EEccCCCcCchHHhhCCccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQL----FKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~Dl~~~~~~~~~~~~~d~v 85 (328)
|+|.|.| +|++|..++..|+ .||+|+++++++++.+.+..-..... .+.+.- ..+.++...+..++++++|+|
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~-e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v 77 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIV-DKEIQQFLQSDKIHFNATLDKNEAYRDADYV 77 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCC-CcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence 3688997 7999999997665 59999999999877665443211000 001000 011122112234456788999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|=+...
T Consensus 78 ii~Vpt 83 (388)
T PRK15057 78 IIATPT 83 (388)
T ss_pred EEeCCC
Confidence 987653
|
|
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0039 Score=55.04 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=59.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcC-chHHhhCCccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG-SFDSIVDGCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~d~vi 86 (328)
+++||+.| +||+.+.++.+|.+++ .+|++..|...+.+.+.. ..+++.+..|+++++ .+++.++..|.++
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~-------~~~~~av~ldv~~~~~~L~~~v~~~D~vi 73 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTLKDAEALVK-------GINIKAVSLDVADEELALRKEVKPLDLVI 73 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEEehhhHHHHHHHhc-------CCCccceEEEccchHHHHHhhhcccceee
Confidence 67899999 5999999999999885 678888887776655433 235889999999998 8999999889988
Q ss_pred Ecc
Q 020266 87 HTA 89 (328)
Q Consensus 87 h~a 89 (328)
-+-
T Consensus 74 SLl 76 (445)
T KOG0172|consen 74 SLL 76 (445)
T ss_pred eec
Confidence 765
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0095 Score=52.09 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=50.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccC----CCCcEEE-----EEccCCCcCchHHhhC
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG----ASERLQL-----FKANLLEEGSFDSIVD 80 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~-----~~~Dl~~~~~~~~~~~ 80 (328)
++|.|.|+ |.+|..++..|++.|++|++.+++++............. ....+.- ....++-..++.+.++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 67999996 999999999999999999999998776555332111000 0000000 0001111235667788
Q ss_pred CccEEEEccC
Q 020266 81 GCDGVCHTAS 90 (328)
Q Consensus 81 ~~d~vih~a~ 90 (328)
++|+||-+..
T Consensus 81 ~aD~Vi~avp 90 (288)
T PRK09260 81 DADLVIEAVP 90 (288)
T ss_pred CCCEEEEecc
Confidence 8999998764
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.015 Score=48.24 Aligned_cols=108 Identities=20% Similarity=0.354 Sum_probs=67.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhh-----------------hccCCCCcEEEEE-
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLL-----------------ALDGASERLQLFK- 66 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-----------------~~~~~~~~~~~~~- 66 (328)
..+..+|+|.|. |.+|++.++.|.+.|. ++.+++-+.-....+.+++ .....+|..+...
T Consensus 27 kl~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~ 105 (263)
T COG1179 27 KLKQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAI 105 (263)
T ss_pred HHhhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeeh
Confidence 445678999995 8999999999999985 5666665433222211111 0111234444433
Q ss_pred ccCCCcCchHHhhC-CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 67 ANLLEEGSFDSIVD-GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 67 ~Dl~~~~~~~~~~~-~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
-|+-.++.+.+++. ++|+||.+. .|+..=..|+..|.++ +. -.+||++
T Consensus 106 ~~f~t~en~~~~~~~~~DyvIDai----------------D~v~~Kv~Li~~c~~~-ki---~vIss~G 154 (263)
T COG1179 106 NDFITEENLEDLLSKGFDYVIDAI----------------DSVRAKVALIAYCRRN-KI---PVISSMG 154 (263)
T ss_pred HhhhCHhHHHHHhcCCCCEEEEch----------------hhhHHHHHHHHHHHHc-CC---CEEeecc
Confidence 34556777777776 589999764 1344456788889887 43 4566754
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.019 Score=44.07 Aligned_cols=58 Identities=29% Similarity=0.231 Sum_probs=47.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
..++|+|+|.|.+.-+|..|+..|.++|.+|....++.. ++++.++.+|+|
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~-----------------------------~l~~~v~~ADIV 75 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI-----------------------------QLQSKVHDADVV 75 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc-----------------------------CHHHHHhhCCEE
Confidence 356899999999999999999999999999988875432 345567788999
Q ss_pred EEccCCC
Q 020266 86 CHTASPF 92 (328)
Q Consensus 86 ih~a~~~ 92 (328)
|-..+..
T Consensus 76 vsAtg~~ 82 (140)
T cd05212 76 VVGSPKP 82 (140)
T ss_pred EEecCCC
Confidence 9887753
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.009 Score=51.97 Aligned_cols=38 Identities=26% Similarity=0.199 Sum_probs=32.6
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
|+|.|.| .|.+|..++..|.+.|++|.+.+|+++..+.
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~ 38 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGHTVYGVSRRESTCER 38 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 3699998 7999999999999999999999997655433
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.014 Score=50.72 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=52.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++|+++|.|| |..|++++-.|.+.|. +|.++.|+.++.+.+...+........+ ...+. .++...+..+|+|
T Consensus 125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~--~~~~~---~~~~~~~~~~div 198 (283)
T PRK14027 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAV--VGVDA---RGIEDVIAAADGV 198 (283)
T ss_pred cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceE--EecCH---hHHHHHHhhcCEE
Confidence 34789999996 9999999999999995 7899999887777765543221110011 11221 2223344568999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
||+...
T Consensus 199 INaTp~ 204 (283)
T PRK14027 199 VNATPM 204 (283)
T ss_pred EEcCCC
Confidence 998753
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.012 Score=52.01 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=49.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhh----hccCCCCcEE-EEEccCCCcCchHHhhCCcc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL----ALDGASERLQ-LFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~-~~~~Dl~~~~~~~~~~~~~d 83 (328)
.++|.|+|+ |.+|..++..|++.|++|++++++.+......... .... ..... ...+.++-..+..++++++|
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~aD 81 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYA-PLGIASAGMGRIRMEAGLAAAVSGAD 81 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhh-hcccHHHHhhceEEeCCHHHHhccCC
Confidence 467999985 99999999999999999999999876655433211 1000 00000 00011111234556678899
Q ss_pred EEEEcc
Q 020266 84 GVCHTA 89 (328)
Q Consensus 84 ~vih~a 89 (328)
+||-+.
T Consensus 82 lVi~av 87 (311)
T PRK06130 82 LVIEAV 87 (311)
T ss_pred EEEEec
Confidence 999775
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0098 Score=55.74 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=48.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+++|+++|+|+ |.+|++++..|.+.|++|.+..|+..+...+..... ... .++.+ +.+ +.++|+||
T Consensus 330 ~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~-------~~~--~~~~~---~~~-l~~~DiVI 395 (477)
T PRK09310 330 LNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ-------GKA--FPLES---LPE-LHRIDIII 395 (477)
T ss_pred cCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-------cce--echhH---hcc-cCCCCEEE
Confidence 45789999995 899999999999999999999887655444333211 111 11111 111 35789999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
++...
T Consensus 396 natP~ 400 (477)
T PRK09310 396 NCLPP 400 (477)
T ss_pred EcCCC
Confidence 99754
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.016 Score=52.95 Aligned_cols=38 Identities=29% Similarity=0.187 Sum_probs=34.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (328)
++|+|||||+...+|-.+++.|.+.|++|++++..+..
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~ 40 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYP 40 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence 36899999999999999999999999999999887543
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.012 Score=51.66 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=47.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+|+|.|.| .|.+|..+++.|.+.|++|.+.+|++++...+... ++. -..+..++++++|+||-+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~--------g~~-------~~~~~~e~~~~~d~vi~~ 65 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAA--------GAE-------TASTAKAVAEQCDVIITM 65 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC--------CCe-------ecCCHHHHHhcCCEEEEe
Confidence 35799998 69999999999999999999999887654432211 111 123456677889999977
Q ss_pred cC
Q 020266 89 AS 90 (328)
Q Consensus 89 a~ 90 (328)
..
T Consensus 66 vp 67 (296)
T PRK11559 66 LP 67 (296)
T ss_pred CC
Confidence 53
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.012 Score=55.50 Aligned_cols=75 Identities=23% Similarity=0.219 Sum_probs=54.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
+.+++|+|+|+ |-+|..+++.|...|. +|+++.|+.++...+...+. ...+.+ ...+++.+.+.++|+|
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~----g~~i~~-----~~~~dl~~al~~aDVV 333 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP----DVEIIY-----KPLDEMLACAAEADVV 333 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC----CCceEe-----ecHhhHHHHHhcCCEE
Confidence 55789999997 9999999999999996 69999998877665544321 011222 1223456677889999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|.+.+.
T Consensus 334 IsAT~s 339 (519)
T PLN00203 334 FTSTSS 339 (519)
T ss_pred EEccCC
Confidence 988654
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0088 Score=52.37 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=33.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (328)
.++|.|.|+ |.+|..++..|+..|++|++.+++++..+
T Consensus 3 i~~I~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l~ 40 (291)
T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFARTGYDVTIVDVSEEILK 40 (291)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 478999995 99999999999999999999999876654
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.04 Score=47.14 Aligned_cols=97 Identities=21% Similarity=0.221 Sum_probs=60.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh----hCCcc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI----VDGCD 83 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~----~~~~d 83 (328)
.+.+|+|+|+++ +|..+++.+...|.+|+++.++++..+.+... + .. ...|..+.+....+ -.++|
T Consensus 134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----G----AD-HVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----C----Cc-eeccCCcCCHHHHHHHhcCCCCC
Confidence 467899999999 99999999988999999998876544332221 1 11 11233333333322 23689
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
+++++++.. .....+++.++.. .+++.+++.
T Consensus 204 ~vi~~~~~~----------------~~~~~~~~~l~~~---G~~v~~~~~ 234 (271)
T cd05188 204 VVIDAVGGP----------------ETLAQALRLLRPG---GRIVVVGGT 234 (271)
T ss_pred EEEECCCCH----------------HHHHHHHHhcccC---CEEEEEccC
Confidence 999987631 1123334444433 578888874
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.044 Score=49.68 Aligned_cols=69 Identities=23% Similarity=0.228 Sum_probs=50.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+.+|+|.|.| .|-||+.+++.|..-|.+|++.+|....... ... .++.-..+++++++.+|+|+
T Consensus 190 L~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~-~~~--------------~g~~~~~~l~ell~~aDvV~ 253 (385)
T PRK07574 190 LEGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEV-EQE--------------LGLTYHVSFDSLVSVCDVVT 253 (385)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCchhh-Hhh--------------cCceecCCHHHHhhcCCEEE
Confidence 5689999999 5999999999999999999999987633221 000 01222346888899999998
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
.+...
T Consensus 254 l~lPl 258 (385)
T PRK07574 254 IHCPL 258 (385)
T ss_pred EcCCC
Confidence 77653
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.018 Score=50.50 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=27.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRD 42 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~ 42 (328)
+.+|.|.||||++|..|++.|.++. .++..+..+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~ 36 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEA 36 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecC
Confidence 5689999999999999999998886 355555433
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=54.97 Aligned_cols=79 Identities=19% Similarity=0.153 Sum_probs=49.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhh----ccCCCCcEEE-EEccCCCcCchHHhhCCccE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA----LDGASERLQL-FKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~-~~~Dl~~~~~~~~~~~~~d~ 84 (328)
|+|.|+| +|.+|..++..|++.|++|++.+++++....+..... ....-..... ..+.++-.+++.++++++|+
T Consensus 5 ~kIavIG-~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 5 MKAACIG-GGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 4799997 6999999999999999999999998776554322110 0000000000 00112222456677889999
Q ss_pred EEEcc
Q 020266 85 VCHTA 89 (328)
Q Consensus 85 vih~a 89 (328)
|+-+.
T Consensus 84 Vieav 88 (495)
T PRK07531 84 IQESV 88 (495)
T ss_pred EEEcC
Confidence 99664
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.042 Score=48.78 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=49.9
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-----CCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DGC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 82 (328)
.+.+++|+|++|.+|..+++.+...|++|+++.++......+.. .. .. ...|..+.+....+. .++
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~----~~-~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LG----AD-YVIDYRKEDFVREVRELTGKRGV 236 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cC----CC-eEEecCChHHHHHHHHHhCCCCC
Confidence 46789999999999999999999999999998887654333211 11 11 112444433333222 258
Q ss_pred cEEEEccC
Q 020266 83 DGVCHTAS 90 (328)
Q Consensus 83 d~vih~a~ 90 (328)
|.++++++
T Consensus 237 d~~i~~~g 244 (342)
T cd08266 237 DVVVEHVG 244 (342)
T ss_pred cEEEECCc
Confidence 99999986
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.013 Score=50.57 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=45.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC---CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
||+|.|+|+ |-+|..++..|.+.| ++|.+.+|+++....+...+ ++.. ..+..++++.+|+|
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~advV 66 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-------GVRA-------ATDNQEAAQEADVV 66 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc-------CCee-------cCChHHHHhcCCEE
Confidence 567999995 999999999999998 78999999865544332211 1111 12344556778998
Q ss_pred EEcc
Q 020266 86 CHTA 89 (328)
Q Consensus 86 ih~a 89 (328)
|-+.
T Consensus 67 il~v 70 (267)
T PRK11880 67 VLAV 70 (267)
T ss_pred EEEc
Confidence 8654
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.048 Score=48.57 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=48.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+.+|+|.|.| .|-||+.+++.|...|++|++.+|++..... .. .-..++.++++++|+|+
T Consensus 144 l~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~------------~~-------~~~~~l~ell~~aDiVi 203 (330)
T PRK12480 144 VKNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPNKDLD------------FL-------TYKDSVKEAIKDADIIS 203 (330)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChhHhhh------------hh-------hccCCHHHHHhcCCEEE
Confidence 4678999999 5999999999999999999999987643211 00 11235778888999888
Q ss_pred EccC
Q 020266 87 HTAS 90 (328)
Q Consensus 87 h~a~ 90 (328)
-+..
T Consensus 204 l~lP 207 (330)
T PRK12480 204 LHVP 207 (330)
T ss_pred EeCC
Confidence 6653
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.019 Score=49.90 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=45.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEe-cCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++|+|+|.|.+|.+|+.++..|+++|++|.+.. |+. ++.++.+.+|+|
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------------------------~l~e~~~~ADIV 205 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------------------------DLPAVCRRADIL 205 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------------------------CHHHHHhcCCEE
Confidence 5699999999999999999999999999999884 442 135566678999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|-+.+.
T Consensus 206 Isavg~ 211 (296)
T PRK14188 206 VAAVGR 211 (296)
T ss_pred EEecCC
Confidence 888765
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.054 Score=49.42 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=68.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh-------------------hhhccCCCCcEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-------------------LLALDGASERLQLF 65 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 65 (328)
..+..+|+|.|+ |.+|..+++.|+..|. ++++++.+.-+...+.+ .+......-+++.+
T Consensus 35 ~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 35 RLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 345778999995 8999999999999995 57777665433332222 12222223356666
Q ss_pred EccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhcc
Q 020266 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 66 ~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~ 138 (328)
...++. +...+++.++|+||.+... ...-..+-++|.+. +. .+|+.+.. ..+|
T Consensus 114 ~~~~~~-~~~~~~~~~~D~Vvd~~d~----------------~~~r~~ln~~~~~~-~~-p~v~~~~~-g~~g 166 (390)
T PRK07411 114 ETRLSS-ENALDILAPYDVVVDGTDN----------------FPTRYLVNDACVLL-NK-PNVYGSIF-RFEG 166 (390)
T ss_pred ecccCH-HhHHHHHhCCCEEEECCCC----------------HHHHHHHHHHHHHc-CC-CEEEEEEc-cCEE
Confidence 666654 4566778899999987532 11122344666665 43 46766653 3444
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.017 Score=50.69 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=48.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
++|.|+| .|.+|..+++.|++.|++|.+.+|++++...+... +. ....+..++++++|+||-+.
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~--------g~-------~~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDK--------GA-------TPAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc--------CC-------cccCCHHHHHhcCCEEEEec
Confidence 4799998 79999999999999999999999987765543221 11 11234556777899988775
Q ss_pred C
Q 020266 90 S 90 (328)
Q Consensus 90 ~ 90 (328)
.
T Consensus 66 p 66 (296)
T PRK15461 66 P 66 (296)
T ss_pred C
Confidence 3
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.024 Score=45.71 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=51.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCC-cCchHHhhCCccE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE-EGSFDSIVDGCDG 84 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~d~ 84 (328)
.+.+|+|+|.|.+.-+|+.|+..|+++|.+|++.+.+.-.... ...+.........| ...+.+.++++|+
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~---------~~~~~~hs~t~~~~~~~~l~~~~~~ADI 129 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT---------RGESIRHEKHHVTDEEAMTLDCLSQSDV 129 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc---------cccccccccccccchhhHHHHHhhhCCE
Confidence 3679999999999999999999999999999988643211100 00000000111111 1236677889999
Q ss_pred EEEccCCCC
Q 020266 85 VCHTASPFY 93 (328)
Q Consensus 85 vih~a~~~~ 93 (328)
||-.+|...
T Consensus 130 VIsAvG~~~ 138 (197)
T cd01079 130 VITGVPSPN 138 (197)
T ss_pred EEEccCCCC
Confidence 998888643
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.02 Score=52.80 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=34.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR 50 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 50 (328)
.+|+|.|.| .|++|..++..|.+ ||+|+++++++.+.+.+.
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK 45 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH
Confidence 457899997 79999999999776 799999999988766654
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.024 Score=48.98 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=31.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP 46 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 46 (328)
+++|+|.| .|.+|+.+++.|.+.|+.|.+++++....
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~~v~i~g~d~~~~ 39 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGLVVRIIGRDRSAA 39 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCCeEEEEeecCcHH
Confidence 56777777 89999999999999999998888876654
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.012 Score=51.35 Aligned_cols=74 Identities=23% Similarity=0.248 Sum_probs=53.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEE-----ccCCCcCchHHhhCCcc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK-----ANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~~~~~~~~~~~~~d 83 (328)
+++|.|.|+ |--|.+|+..|.++||+|..-.|+++-...+... +.+..+++ -++.-..++.++++++|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~------~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAEINET------RENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc------CcCccccCCccCCcccccccCHHHHHhcCC
Confidence 467999996 8899999999999999999999987765553332 11223332 33344467888899999
Q ss_pred EEEEcc
Q 020266 84 GVCHTA 89 (328)
Q Consensus 84 ~vih~a 89 (328)
+|+-..
T Consensus 74 ~iv~av 79 (329)
T COG0240 74 IIVIAV 79 (329)
T ss_pred EEEEEC
Confidence 988543
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.022 Score=49.14 Aligned_cols=57 Identities=23% Similarity=0.155 Sum_probs=47.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+|+|+|.+..+|+.|+..|+++|.+|++..+.. .++.+..+++|+||
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T-----------------------------~~l~~~~~~ADIvi 207 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT-----------------------------KNLRHHVRNADLLV 207 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC-----------------------------CCHHHHHhhCCEEE
Confidence 4589999999999999999999999999998876542 13556677899999
Q ss_pred EccCCC
Q 020266 87 HTASPF 92 (328)
Q Consensus 87 h~a~~~ 92 (328)
..+|..
T Consensus 208 ~avG~p 213 (285)
T PRK10792 208 VAVGKP 213 (285)
T ss_pred EcCCCc
Confidence 998763
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.052 Score=47.07 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=66.9
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh-------------------hhhccCCCCcEEE
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-------------------LLALDGASERLQL 64 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~ 64 (328)
..++..+|||.|+ |.+|..+++.|+..|. +|.+++.+.-+...+.+ .+......-+++.
T Consensus 15 ~kL~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~ 93 (286)
T cd01491 15 KKLQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV 93 (286)
T ss_pred HHHhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence 3455778999995 8899999999999995 57777765433322221 1222222334555
Q ss_pred EEccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhcc
Q 020266 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 65 ~~~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~ 138 (328)
+..++ ..+.+.++|+||.+.. |......+-++|++. ++ .||+.++. .++|
T Consensus 94 ~~~~~-----~~~~l~~fdvVV~~~~----------------~~~~~~~in~~c~~~-~i-pfI~a~~~-G~~G 143 (286)
T cd01491 94 STGPL-----TTDELLKFQVVVLTDA----------------SLEDQLKINEFCHSP-GI-KFISADTR-GLFG 143 (286)
T ss_pred EeccC-----CHHHHhcCCEEEEecC----------------CHHHHHHHHHHHHHc-CC-EEEEEecc-ccEE
Confidence 55443 2345678899887642 122223455777776 54 58888774 4554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0091 Score=51.53 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=66.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC-CcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL-EEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~d~vi 86 (328)
.++++.|+|+.| ||.--+++-.+-|++|++++++..+.+..-+.+ +.+.+ .|.+ |++.+.++.+-.|.++
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L-------GAd~f-v~~~~d~d~~~~~~~~~dg~~ 251 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL-------GADVF-VDSTEDPDIMKAIMKTTDGGI 251 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc-------Cccee-EEecCCHHHHHHHHHhhcCcc
Confidence 488999999988 998888777777999999999875544422222 23333 3445 7777777777778888
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
|++..++. .+ ...++..++.. +++|.++=.
T Consensus 252 ~~v~~~a~---~~-----------~~~~~~~lk~~---Gt~V~vg~p 281 (360)
T KOG0023|consen 252 DTVSNLAE---HA-----------LEPLLGLLKVN---GTLVLVGLP 281 (360)
T ss_pred eeeeeccc---cc-----------hHHHHHHhhcC---CEEEEEeCc
Confidence 87754311 11 12344555544 578888764
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.017 Score=52.84 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=49.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+.+++|+|+|. |.||+.++..|...|.+|++.++++.+...... .++... .+.++++++|+||
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~--------~G~~v~--------~l~eal~~aDVVI 272 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAM--------DGFRVM--------TMEEAAELGDIFV 272 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh--------cCCEec--------CHHHHHhCCCEEE
Confidence 46899999995 999999999999999999999988765422111 122211 2456778899999
Q ss_pred EccC
Q 020266 87 HTAS 90 (328)
Q Consensus 87 h~a~ 90 (328)
.+++
T Consensus 273 ~aTG 276 (425)
T PRK05476 273 TATG 276 (425)
T ss_pred ECCC
Confidence 8764
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.017 Score=51.68 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=35.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT 49 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 49 (328)
.+.+|+|+||+|.+|..++..+...|.+|+++.++.++.+.+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~ 192 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLL 192 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 478999999999999999988888899999988876654443
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.02 Score=53.05 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=50.6
Q ss_pred CCCCeEEEECC----------------ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC
Q 020266 7 AAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70 (328)
Q Consensus 7 ~~~~~vlVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (328)
+++|+||||+| ||-.|.+|++++..+|++|+.+.-.-. .. .+.+++.+..+
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-~~----------~p~~v~~i~V~-- 320 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-LA----------DPQGVKVIHVE-- 320 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-CC----------CCCCceEEEec--
Confidence 67999999975 799999999999999999998873211 10 12345555433
Q ss_pred CcCchHHhhC---CccEEEEccCCC
Q 020266 71 EEGSFDSIVD---GCDGVCHTASPF 92 (328)
Q Consensus 71 ~~~~~~~~~~---~~d~vih~a~~~ 92 (328)
...++.+.++ ..|++|++||..
T Consensus 321 ta~eM~~av~~~~~~Di~I~aAAVa 345 (475)
T PRK13982 321 SARQMLAAVEAALPADIAIFAAAVA 345 (475)
T ss_pred CHHHHHHHHHhhCCCCEEEEecccc
Confidence 3333333332 379999999973
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.014 Score=51.82 Aligned_cols=41 Identities=34% Similarity=0.411 Sum_probs=35.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
.+.+++|+||+|.+|..+++.+...|.+|+++.++++....
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~ 202 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKI 202 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 36789999999999999999999999999999887654433
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.019 Score=50.69 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=53.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
|++|.|+|| |.+|+-++.+-..-|++|++++-+++.+... -.-..+..+.+|++.++++.+.+|+|-.
T Consensus 1 ~~tvgIlGG-GQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~----------va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGG-GQLGRMMALAAARLGIKVIVLDPDADAPAAQ----------VADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcC-cHHHHHHHHHHHhcCCEEEEecCCCCCchhh----------cccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 578999996 9999999999999999999999766654330 0123455677788999999999998854
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.018 Score=51.15 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=28.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC---CeEEEEecCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDP 43 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~ 43 (328)
+.++|.|.||||++|..|++.|.++. .++..+....
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~ 41 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEE 41 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccC
Confidence 35689999999999999999999853 4566665443
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.019 Score=52.59 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=53.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 85 (328)
+.|+|+|+|+ |.+|+.++..+.+.|++|++++.++...... . .-.++..|..|++.+.++++ ++|.|
T Consensus 11 ~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~---~-------ad~~~~~~~~d~~~l~~~~~~~~id~v 79 (395)
T PRK09288 11 SATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQ---V-------AHRSHVIDMLDGDALRAVIEREKPDYI 79 (395)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchHH---h-------hhheEECCCCCHHHHHHHHHHhCCCEE
Confidence 4568999985 7999999999999999999999876543220 0 00245678888888888777 78988
Q ss_pred EEcc
Q 020266 86 CHTA 89 (328)
Q Consensus 86 ih~a 89 (328)
+-..
T Consensus 80 i~~~ 83 (395)
T PRK09288 80 VPEI 83 (395)
T ss_pred EEee
Confidence 8643
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.012 Score=41.98 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=46.8
Q ss_pred eEEEECCccHHHHHHHHHHHHCC---CeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 11 VVCVTGASGYIASWLVKLLLSRG---YTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g---~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
||.|+| +|-+|.+|++.|++.| ++|.+. .|++++...+..... +.... .+..++++.+|+||
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-------~~~~~------~~~~~~~~~advvi 66 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-------VQATA------DDNEEAAQEADVVI 66 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-------TEEES------EEHHHHHHHTSEEE
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-------ccccc------CChHHhhccCCEEE
Confidence 577885 7999999999999999 999965 888877766555431 22211 24566777899999
Q ss_pred EccC
Q 020266 87 HTAS 90 (328)
Q Consensus 87 h~a~ 90 (328)
-+.-
T Consensus 67 lav~ 70 (96)
T PF03807_consen 67 LAVK 70 (96)
T ss_dssp E-S-
T ss_pred EEEC
Confidence 8753
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.013 Score=52.52 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=30.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
||+|.|.| +|.+|..++..|.+.||+|.+++|++
T Consensus 2 ~mkI~IiG-~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 2 MARICVLG-AGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 46799998 69999999999999999999999864
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.022 Score=50.34 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=30.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
.|+|.|.| +|-+|.+++..|.+.||+|.+.+|+.
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45799998 59999999999999999999999875
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.016 Score=51.74 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=49.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+|+|.|.| +|-+|..++..|++.|++|.+.+|+++..+.+..........++... ...+.-..+..++++.+|+||-+
T Consensus 4 ~m~I~iIG-~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~-~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 4 GMRVAVLG-AGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVAL-PAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcC-CCCeEEeCCHHHHHcCCCEEEEE
Confidence 45799998 59999999999999999999999986655544332100000001000 00011123455667789999876
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
.
T Consensus 82 v 82 (328)
T PRK14618 82 V 82 (328)
T ss_pred C
Confidence 5
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.024 Score=54.45 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=54.8
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
+..+++|+|+|.|+ |.+|+.++..+.+.|++|++++.++..... .. --..+.+|..|.+.+.++.+.+|
T Consensus 17 ~~~~~~k~IgIIGg-Gqlg~mla~aA~~lG~~Vi~ld~~~~apa~---~~-------AD~~~v~~~~D~~~l~~~a~~~d 85 (577)
T PLN02948 17 VHGVSETVVGVLGG-GQLGRMLCQAASQMGIKVKVLDPLEDCPAS---SV-------AARHVVGSFDDRAAVREFAKRCD 85 (577)
T ss_pred ccCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchh---hh-------CceeeeCCCCCHHHHHHHHHHCC
Confidence 34567889999996 799999999999999999999887653221 00 11245578888888888888888
Q ss_pred EEEE
Q 020266 84 GVCH 87 (328)
Q Consensus 84 ~vih 87 (328)
+|..
T Consensus 86 vIt~ 89 (577)
T PLN02948 86 VLTV 89 (577)
T ss_pred EEEE
Confidence 8743
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.026 Score=48.66 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+|+|.|.++.+|+.++..|.++|.+|++..... .++.+.++.+|+||
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t-----------------------------~~l~~~~~~ADIVV 206 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT-----------------------------RDLAAHTRQADIVV 206 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC-----------------------------CCHHHHhhhCCEEE
Confidence 4689999999999999999999999999998754321 23556677899999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
-.+|.
T Consensus 207 ~avG~ 211 (285)
T PRK14189 207 AAVGK 211 (285)
T ss_pred EcCCC
Confidence 88874
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.031 Score=50.40 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=30.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRD 42 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~ 42 (328)
.++|.|+|.+|.+|+.+++.|.+. |++|+++++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~ 38 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA 38 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 468999999999999999999975 8899998874
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.083 Score=49.67 Aligned_cols=40 Identities=25% Similarity=0.156 Sum_probs=34.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
.+.+|+|+|+ |-+|...+..+...|.+|++++++++..+.
T Consensus 164 pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ 203 (509)
T PRK09424 164 PPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQ 203 (509)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4789999996 999999999999999999999998766554
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.012 Score=57.17 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=57.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih 87 (328)
.++|+|.|. |-+|+.+++.|.++|+++++++.+++..+.+++ .+...+.||.++++.++++ ++++|.||-
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 357999995 999999999999999999999999877665433 2578899999999877743 457888876
Q ss_pred cc
Q 020266 88 TA 89 (328)
Q Consensus 88 ~a 89 (328)
+.
T Consensus 471 ~~ 472 (621)
T PRK03562 471 AI 472 (621)
T ss_pred Ee
Confidence 54
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.025 Score=48.79 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=46.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+|.|.|.+|.+|+.++..|+++|++|.+.. + ++ .++.+..+++|+||
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~-s--~t--------------------------~~l~~~~~~ADIVI 206 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH-S--RT--------------------------RNLAEVARKADILV 206 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC-C--CC--------------------------CCHHHHHhhCCEEE
Confidence 4689999999999999999999999999998861 1 11 13566677899999
Q ss_pred EccCCC
Q 020266 87 HTASPF 92 (328)
Q Consensus 87 h~a~~~ 92 (328)
-+.|..
T Consensus 207 ~avg~~ 212 (284)
T PRK14179 207 VAIGRG 212 (284)
T ss_pred EecCcc
Confidence 888753
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.021 Score=51.72 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=60.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+.+.+++||+|| |=.|.-++++|.+.| ..|++..|+.++...+...+. ++....+++...+..+|+
T Consensus 175 ~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~------------~~~~~l~el~~~l~~~Dv 241 (414)
T COG0373 175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG------------AEAVALEELLEALAEADV 241 (414)
T ss_pred ccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC------------CeeecHHHHHHhhhhCCE
Confidence 356899999996 999999999999999 679999999988887766542 455555677788889999
Q ss_pred EEEccCCC
Q 020266 85 VCHTASPF 92 (328)
Q Consensus 85 vih~a~~~ 92 (328)
||-+.+..
T Consensus 242 VissTsa~ 249 (414)
T COG0373 242 VISSTSAP 249 (414)
T ss_pred EEEecCCC
Confidence 99987653
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.038 Score=49.59 Aligned_cols=80 Identities=19% Similarity=0.101 Sum_probs=52.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|++.|.| .|-||+.+++.|..-|.+|++.+|+....... ..... .....-+........++.+++..+|+|+
T Consensus 157 l~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~L~ell~~aDiVv 231 (347)
T PLN02928 157 LFGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTSEPED--GLLIP--NGDVDDLVDEKGGHEDIYEFAGEADIVV 231 (347)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCChhhhh--hhccc--cccccccccccCcccCHHHHHhhCCEEE
Confidence 5689999999 59999999999999999999999874322110 00000 0001111111114567889999999999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
.+...
T Consensus 232 l~lPl 236 (347)
T PLN02928 232 LCCTL 236 (347)
T ss_pred ECCCC
Confidence 87754
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.047 Score=47.15 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=48.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
++|.++| .|-.|..++..|++.||+|.+.+|++++...+.... +.. -..+..++...+|+||-+-
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~-------Ga~-------~a~s~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAA-------GAT-------VAASPAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHc-------CCc-------ccCCHHHHHHhCCEEEEec
Confidence 3688888 899999999999999999999999988843322221 111 1244566777889998875
Q ss_pred C
Q 020266 90 S 90 (328)
Q Consensus 90 ~ 90 (328)
.
T Consensus 66 ~ 66 (286)
T COG2084 66 P 66 (286)
T ss_pred C
Confidence 4
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.027 Score=50.14 Aligned_cols=39 Identities=33% Similarity=0.387 Sum_probs=31.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (328)
+.+|||+||+|.+|...+.-+...|..++++..+.++.+
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~ 181 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE 181 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH
Confidence 789999999999999999888888977666666555444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 328 | ||||
| 2c29_D | 337 | Structure Of Dihydroflavonol Reductase From Vitis V | 4e-63 | ||
| 2rh8_A | 338 | Structure Of Apo Anthocyanidin Reductase From Vitis | 3e-53 | ||
| 2p4h_X | 322 | Crystal Structure Of Vestitone Reductase From Alfal | 5e-41 | ||
| 1y1p_A | 342 | X-Ray Structure Of Aldehyde Reductase With Nadph Le | 9e-25 | ||
| 1ujm_A | 342 | Crystal Structure Of Aldehyde Reductase 2 From Spor | 4e-23 | ||
| 3dhn_A | 227 | Crystal Structure Of The Putative Epimerase Q89z24_ | 2e-04 |
| >pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera At 1.8 A. Length = 337 | Back alignment and structure |
|
| >pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis Vinifera Length = 338 | Back alignment and structure |
|
| >pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa (Medicago Sativa L.) Length = 322 | Back alignment and structure |
|
| >pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph Length = 342 | Back alignment and structure |
|
| >pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From Sporobolomyces Salmonicolor Aku4429 Length = 342 | Back alignment and structure |
|
| >pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Consortium Target Btr310 Length = 227 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 488 bits (1258), Expect = e-175
Identities = 125/328 (38%), Positives = 189/328 (57%), Gaps = 9/328 (2%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
+ + VCVTGASG+I SWLV LL RGYTV+A+VRDP + KK +HLL L A L L+
Sbjct: 2 GSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLW 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
KA+L +EGSFD + GC GV H A+P ++KDP+ E++ P ++G L ++ SCA +++
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVR 121
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL---WYPLSKTLAEDAAWKFA 182
R+V TSS V V DE+ +SD E C+ ++ Y +SKTLAE AAWK+A
Sbjct: 122 RLVFTSSAGTVNIQEH---QLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYA 178
Query: 183 KEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY--PNVTFGWVNVKDVANAH 240
KE +ID +TI P +V+GP + ++ S LS I G + + +V++ D+ NAH
Sbjct: 179 KENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAH 238
Query: 241 IQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVK 300
I FE P A GRY ++ ++RE YP + +P + ++ + +K+
Sbjct: 239 IYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLT 298
Query: 301 NLGIEF-IPVEVSLKETIESLKEKGFVD 327
+LG EF +E +++ + KG +
Sbjct: 299 DLGFEFKYSLEDMFTGAVDTCRAKGLLP 326
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 485 bits (1251), Expect = e-174
Identities = 121/340 (35%), Positives = 188/340 (55%), Gaps = 16/340 (4%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
M++ K CV G +G++AS LVKLLL +GY V +VRDP++ KK HLL L +
Sbjct: 1 MATQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD 60
Query: 61 RLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
L++F+A+L +E SF++ + GCD V H A+P + ++DP+ +++ PA++G +NV+ +C +
Sbjct: 61 -LKIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTR 119
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL---WYPLSKTLAEDA 177
S+KRV+LTSS AAV +VVDE ++D E ++ YP SKTLAE A
Sbjct: 120 AKSVKRVILTSSAAAVTINQLDG-TGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKA 178
Query: 178 AWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT---------YPNVTF 228
AWKFA+E +IDL+T+ P ++ G L + +S +SLI G + + +
Sbjct: 179 AWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSV 238
Query: 229 GWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPH 288
+V+DV AHI E SA+GRY + E+ + + YP +++P D P
Sbjct: 239 SIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPK 298
Query: 289 VPTYQVLKEKVKNLGIEF-IPVEVSLKETIESLKEKGFVD 327
+ EK+ G F +E E++E K KG +
Sbjct: 299 SK-LIISSEKLVKEGFSFKYGIEEIYDESVEYFKAKGLLQ 337
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 474 bits (1221), Expect = e-170
Identities = 103/323 (31%), Positives = 163/323 (50%), Gaps = 10/323 (3%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKAN 68
VCVTG +G++ SW++K LL GY+V ++R DP + L L GASE+L F A+
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNAD 61
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
L SF + ++GC G+ HTASP +P+ + V G L +L +C ++KR +
Sbjct: 62 LSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFI 121
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW---YPLSKTLAEDAAWKFAKEK 185
TSS +AV GK V+DE+ +SD ++ + + + Y +SKTLAE A +F ++
Sbjct: 122 YTSSGSAVSFNGK---DKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQN 178
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYPNVTFGWVNVKDVANAHIQAF 244
ID+VT+ ++G + P L S L L+ G + F V+V DVA AHI
Sbjct: 179 GIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLL 238
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCAD-DKPHVPTYQVLKEKVKNLG 303
E GRY + E+ ++ YP +Q+ + + +K+ + G
Sbjct: 239 ENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAG 298
Query: 304 IEF-IPVEVSLKETIESLKEKGF 325
+F +E + I+ KEKG+
Sbjct: 299 FDFKYTIEDMFDDAIQCCKEKGY 321
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 408 bits (1050), Expect = e-143
Identities = 88/342 (25%), Positives = 150/342 (43%), Gaps = 24/342 (7%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
+ + G +V VTGA+G++AS +V+ LL GY V+ + R + +
Sbjct: 3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGR 62
Query: 61 RLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
++L++G++D ++ G GV H AS + E++ PA+ GTLN L + A
Sbjct: 63 FETAVVEDMLKQGAYDEVIKGAAGVAHIASVV--SFSNKYDEVVTPAIGGTLNALRAAAA 120
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC----------KQSELWYPLS 170
PS+KR VLTSS + L KP + +DE ++ + ++S Y S
Sbjct: 121 TPSVKRFVLTSSTVSALI-PKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAAS 179
Query: 171 KTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPT--LNTSAAAVLSLIKGAQT---Y 223
KT AE AAWKF E L + P IG + P +++ ++SL G +
Sbjct: 180 KTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239
Query: 224 PNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVERVSHYSEIVNIIRELYPAFQLPEKC 282
+V+ D+ H+ +P R ++ ++ R+LYP+ P
Sbjct: 240 LMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADF 299
Query: 283 ADDKPHVPTYQVLK--EKVKNLGIE-FIPVEVSLKETIESLK 321
D + + E +K+LG + +E S+K+ + S
Sbjct: 300 PDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 4e-73
Identities = 55/345 (15%), Positives = 114/345 (33%), Gaps = 48/345 (13%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V GA+G + + + + G+ + R + ++ +L + A +L+
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYL--------EPECRVAEMLD 67
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+ + G DGV +A + + Q E + A+ T +C + + R++
Sbjct: 68 HAGLERALRGLDGVIFSAGYYPSRPRRWQ-EEVASALGQTNPFYAACLQ-ARVPRILYVG 125
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S A+ + E F D +S Y L K ++ A + A+ + +V
Sbjct: 126 SAYAM----PRHPQGLPGHEGLFYDSLPSGKS--SYVLCKWALDEQAREQARNG-LPVVI 178
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
P MV+G L T+ + ++ G Y ++ + + A E
Sbjct: 179 GIPGMVLGEL--DIGPTTGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGRIG 236
Query: 251 GRYCLVERVSHYSEIVNIIRE--------------LYPAFQLPEKCADDKPHVP--TYQV 294
RY L +++ I E L +P
Sbjct: 237 ERYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETA 296
Query: 295 LK----------EKVKN-LG-IEFIPVEVSLKETIESLKEKGFVD 327
++ K + LG ++ +L I+ ++ G+ +
Sbjct: 297 IEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFRDNGYFN 341
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 6e-73
Identities = 54/259 (20%), Positives = 99/259 (38%), Gaps = 34/259 (13%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
K + + GASG++ S L+ L+RG+ V A VR P + +E L++ K
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK---------IKIENEHLKVKK 52
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
A++ + G D V +P +++ ++ D +K L +++ K + R
Sbjct: 53 ADVSSLDEVCEVCKGADAVISAFNPGWNNP-----DIYDETIKVYLTIIDGVKKAG-VNR 106
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
++ ++ P + + ++ + E P K L E KEK
Sbjct: 107 FLMVGGAGSL-----FIAPGLRLMDS-------GEVPENILPGVKALGEFYLNFLMKEKE 154
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246
ID V +PA + P ++ L K V ++V+D A A I E
Sbjct: 155 IDWVFFSPAADMRPGVRTGR-------YRLGKDDMIVDIVGNSHISVEDYAAAMIDELEH 207
Query: 247 PSANGRYCLVERVSHYSEI 265
P + + + H+
Sbjct: 208 PKHHQERFTIGYLEHHHHH 226
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 5e-21
Identities = 61/340 (17%), Positives = 120/340 (35%), Gaps = 59/340 (17%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD---GASERLQLFKA 67
++ VTG+SG I + LV L + +++A D + ++
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKK--------------NVIASDIVQRDTGGIKFITL 46
Query: 68 NLLEEGSFDSIVD--GCDGVCHTASPFYHDA-KDPQVELLDPAVKGTLNVLNSCAKFPSI 124
++ D V+ D + H A KDP + + GT N+L + + +
Sbjct: 47 DVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALA-YKVNMNGTYNILEAAKQH-RV 104
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
++VV+ S++ P TP V + P ++ + ++K AE + ++
Sbjct: 105 EKVVIPSTIGVF----GPETPKNKVPSITITRP----RT--MFGVTKIAAELLGQYYYEK 154
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------WVNVKDVA 237
+D+ ++ +I +PT T+ AV + + + + D
Sbjct: 155 FGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDAL 214
Query: 238 NAHIQAFEVPSANGRYCLVERVSHYS----EIVNIIRELYPAFQL------PEKCADDKP 287
A + +E V+ Y+ E+ + I+E P F++ +K A P
Sbjct: 215 KALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAATWP 274
Query: 288 HVPTYQVLKEKVKNLGIEFIPVEVSL----KETIESLKEK 323
G F E L + I+ + EK
Sbjct: 275 ESLDSSEAS---NEWG--FSI-EYDLDRTIDDMIDHISEK 308
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 4e-20
Identities = 29/254 (11%), Positives = 88/254 (34%), Gaps = 38/254 (14%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + GA+G S +++ +RG+ V A VR+ + + + + + ++ +
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG---------KITQTHKDINILQKDIFD 53
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
D + + V +A + V ++++ R+++
Sbjct: 54 LTLSD--LSDQNVVVDAYGISPDEA--------EKHVTSLDHLIS-VLNGTVSPRLLVVG 102
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
A++ + +++ + +YP ++ A+ + +
Sbjct: 103 GAASL---QIDEDGNTLLESKGLREAP-------YYPTARAQAKQLEHLKSHQAEFSWTY 152
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251
I+P+ + P + K + + +++++D A A + E P+
Sbjct: 153 ISPSAMFEPG-------ERTGDYQIGKDHLLFGSDGNSFISMEDYAIAVLDEIERPNHLN 205
Query: 252 -RYCLVERVSHYSE 264
+ + ++ H+
Sbjct: 206 EHFTVAGKLEHHHH 219
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 2e-19
Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 25/193 (12%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
A K + VTGA+G + + + L ++ + P LD A + +
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSP-----------LDPAGPNEECVQC 50
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+L + + +++V GCDG+ H + P ++L + G N+ + R+
Sbjct: 51 DLADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYNLYEAARAH-GQPRI 106
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
V SS + + + + P+ Y +SK E+ A + +
Sbjct: 107 VFASSNHTIGYYPQ----TERLGPDVPARPDGL------YGVSKCFGENLARMYFDKFGQ 156
Query: 188 DLVTINPAMVIGP 200
+ +
Sbjct: 157 ETALVRIGSCTPE 169
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 85.6 bits (211), Expect = 5e-19
Identities = 52/342 (15%), Positives = 95/342 (27%), Gaps = 45/342 (13%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGY-----TVKASVRDPNDPKKTRHLLALDGASERLQL 64
V + G +G I + L ++L V R +
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPA---------WHEDNPINY 52
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF-PS 123
+ ++ + + + V H + + Q E + K NVL++ P+
Sbjct: 53 VQCDISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQ-ENCEANSKMFRNVLDAVIPNCPN 111
Query: 124 IKRVVLTSSMAA----VLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAW 179
+K + L + + GK + D E Y ED
Sbjct: 112 LKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLK---------YMNFYYDLEDIML 162
Query: 180 K-FAKEKSIDLVTINPAMVIGPLLQPTLNTSA-----AAVLSLIKGAQTYPNVTFGWVNV 233
+ K++ + P + G +N AA+ + W
Sbjct: 163 EEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGY 222
Query: 234 KDV------ANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKP 287
D A HI A P A V + + + L F + ++
Sbjct: 223 SDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFK-WKHFWKVLAEQFGVECGEYEEGV 281
Query: 288 HVPTYQVLKEKVKNLGIEFIPVEVSLKET-IESLKEKGFVDF 328
+ ++K K E I E L T ++ + F D
Sbjct: 282 DLKLQDLMKGKEPVW--EEIVRENGLTPTKLKDVGIWWFGDV 321
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 6e-19
Identities = 49/227 (21%), Positives = 79/227 (34%), Gaps = 34/227 (14%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTGA+G + S + L + + V+ S + L A ++ +L +
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDI-----------VDLGAAEAHEEIVACDLAD 53
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+ +V CDG+ H + P ++L + G N+ + R+V S
Sbjct: 54 AQAVHDLVKDCDGIIHLGG---VSVERPWNDILQANIIGAYNLYEAARNL-GKPRIVFAS 109
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S + PRT +D P S Y LSK ED A + + I+ +
Sbjct: 110 SNHTIGYY--PRTT--RIDTEVPRRP----DSL--YGLSKCFGEDLASLYYHKFDIETLN 159
Query: 192 INPAMVIGPLLQPTLNTSAAAVLS------LIKGAQTYPNVTFGWVN 232
I P A LS L+K A P + V
Sbjct: 160 IRIGSCFPK---PKDARMMATWLSVDDFMRLMKRAFVAPKLGCTVVY 203
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-16
Identities = 31/242 (12%), Positives = 76/242 (31%), Gaps = 52/242 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL-L 70
+ + G++G + L+K L + Y + A R + + ++ ++
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV------EQVPQYNN----VKAVHFDVDW 52
Query: 71 EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
+ G D + + + K +D + G + ++ + K +KR +L
Sbjct: 53 TPEEMAKQLHGMDAIINVSGS---GGKSL--LKVD--LYGAVKLMQAAEK-AEVKRFILL 104
Query: 131 SSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLV 190
S++ + +P + Y ++K A+ KE ++D
Sbjct: 105 STIFS----LQPEKWIGAGFDALKD-----------YYIAKHFADLYL---TKETNLDYT 146
Query: 191 TINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
I P + ++ + + DVA+ + +
Sbjct: 147 IIQPGALTEEEATGLIDINDE---------------VSASNTIGDVADTIKELVMTDHSI 191
Query: 251 GR 252
G+
Sbjct: 192 GK 193
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 5e-16
Identities = 54/278 (19%), Positives = 87/278 (31%), Gaps = 57/278 (20%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD----------G 57
A V V G +G++ S LVK LL G V +D
Sbjct: 31 ANTNVMVVGGAGFVGSNLVKRLLELGV---NQVH------------VVDNLLSAEKINVP 75
Query: 58 ASERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA------VKGT 111
++ + ++ ++ S+ D D V H A+ Q + DP T
Sbjct: 76 DHPAVRFSETSITDDALLASLQDEYDYVFHLATYH-----GNQSSIHDPLADHENNTLTT 130
Query: 112 LNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK 171
L + F +K+VV +++ ++ + D E S Y +SK
Sbjct: 131 LKLYERLKHFKRLKKVVYSAAGCSI---AEKTFDDAKATEETDIVSLHNNDS--PYSMSK 185
Query: 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP-------TLNTSAAAVLSL-IKGAQTY 223
E + + K+ + V V GP T T V I A
Sbjct: 186 IFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKG 245
Query: 224 PNVT-FG-------WVNVKDVANAHIQAFEVPSANGRY 253
+ ++ V+DVAN I + G Y
Sbjct: 246 MPLPLENGGVATRDFIFVEDVANGLIACAADGTPGGVY 283
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 5e-16
Identities = 30/241 (12%), Positives = 60/241 (24%), Gaps = 49/241 (20%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + GA+G + + GY V VRD + + ++L+
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR--------LPSEGPRPAHVVVGDVLQ 57
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
D V G D V + +G N++ + + +VV +
Sbjct: 58 AADVDKTVAGQDAVIVLLGT------RNDLSPTTVMSEGARNIVAAMKAHG-VDKVVACT 110
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S + DP +E + V
Sbjct: 111 SAFLLW------------------DPTKVPPRLQAVTDDHIRMHKV----LRESGLKYVA 148
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251
+ P + T A V ++ D+ + ++ +G
Sbjct: 149 VMPPH-----IGDQPLTGAYTVT-------LDGRGPSRVISKHDLGHFMLRCLTTDEYDG 196
Query: 252 R 252
Sbjct: 197 H 197
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 7e-16
Identities = 35/245 (14%), Positives = 67/245 (27%), Gaps = 43/245 (17%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ V GA+G S +V RG+ V A VRDP E L L +A
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEA---- 58
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+D D V S + + + ++++ V +
Sbjct: 59 ------DLDSVDAVVDALSVPWGSGRGYL------HLDFATHLVSLLRN-SDTLAVFILG 105
Query: 132 SMAAVLNTGK----PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
S + + P+ + W+ ++
Sbjct: 106 SASLAMPGADHPMILDFPESAASQPWYDGALYQYY--------------EYQFLQMNANV 151
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247
+ + I+P+ + +L G + ++A A + E P
Sbjct: 152 NWIGISPSEAFPSGPATSYVAGKDTLLVGEDGQ--------SHITTGNMALAILDQLEHP 203
Query: 248 SANGR 252
+A
Sbjct: 204 TAIRD 208
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 9e-16
Identities = 43/259 (16%), Positives = 70/259 (27%), Gaps = 55/259 (21%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
V VTGASG + K L + K VR + + +F
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR---SAQGKEKIGG------EADVFIG 55
Query: 68 NLLEEGSFDSIVDGCDGV--CHTASPFYHDAKDPQVELLDPAVK------------GTLN 113
++ + S + G D + +A P DP + G N
Sbjct: 56 DITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKN 115
Query: 114 VLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTL 173
++ AK +K +V+ SM PD +++ + + K
Sbjct: 116 QID-AAKVAGVKHIVVVGSMGG-------TNPDHPLNKLGNGN----------ILVWKRK 157
Query: 174 AEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233
AE + I ++ L+ V
Sbjct: 158 AEQY----LADSGTPYTIIRAGGLLDKE--------GGVRELLVGKDDELLQTDTKTVPR 205
Query: 234 KDVANAHIQAFEVPSANGR 252
DVA IQA A +
Sbjct: 206 ADVAEVCIQALLFEEAKNK 224
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-15
Identities = 52/242 (21%), Positives = 85/242 (35%), Gaps = 50/242 (20%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V V GA+G +A +L+ L ++G+ A VR+ + R A D + ANL E
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASD-------IVVANLEE 76
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
F D V A H D L+D + G + + K IKR ++ S
Sbjct: 77 --DFSHAFASIDAVVFAAGSGPHTGADK-TILID--LWGAIKTIQEAEK-RGIKRFIMVS 130
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S+ DP+ + Y ++K LA+D K S+D T
Sbjct: 131 SVGT-------------------VDPDQGPMNMRHYLVAKRLADDE----LKRSSLD-YT 166
Query: 192 INPAMVIGPLLQP-TLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
I ++P L+ + + + + DVA + +
Sbjct: 167 I---------VRPGPLSNEESTGKVTVSPHFSEIT---RSITRHDVAKVIAELVDQQHTI 214
Query: 251 GR 252
G+
Sbjct: 215 GK 216
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 1e-14
Identities = 58/338 (17%), Positives = 101/338 (29%), Gaps = 68/338 (20%)
Query: 12 VCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
+ + GA G I + L + L G V + K ++ N L
Sbjct: 5 ILIIGACGQIGTELTQKLRKLYGTEN---VIASDIRKLNTDVV------NSGPFEVVNAL 55
Query: 71 EEGSFDSIVD--GCDGVCHTAS----------PFYHDAKDPQVELLDPAVKGTLNVLNSC 118
+ + +V+ + A+ F D + +VLN
Sbjct: 56 DFNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLN----------MNSLFHVLNLA 105
Query: 119 AKFPSIKRVVLTSSMAAV-LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA 177
IK++ SS+A T K TP + E P + Y +SK E
Sbjct: 106 KAK-KIKKIFWPSSIAVFGPTTPKENTPQYTIME-----P----ST--VYGISKQAGERW 153
Query: 178 AWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------W 230
+ +D+ +I +I P T+ AV K F
Sbjct: 154 CEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPM 213
Query: 231 VNVKDVANAHIQAFEVPSANGRYCLVERVSHYS----EIVNIIRELYPAFQ------LPE 280
+ + D +A I + P + ++ S EI N I++ P F +
Sbjct: 214 MYMDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQ 273
Query: 281 KCADDKPHVPTYQVLKEKVKNLGIEFIPVEVSLKETIE 318
K AD P + ++ + L+ +
Sbjct: 274 KIADSWPASIDDSQAR---EDWD--WKH-TFDLESMTK 305
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 5e-14
Identities = 45/334 (13%), Positives = 111/334 (33%), Gaps = 70/334 (20%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G++ ++V+ + + G T + + A + ++
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPI--ILT---------RSIGNKAINDYEYRVSDYTL 53
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDA--------KDPQVELLDPAVKGTLNVLNSCAKFPS 123
E + ++ D V H A A + T N+ ++C + +
Sbjct: 54 EDLIN-QLNDVDAVVHLA------ATRGSQGKISEFHDN-----EILTQNLYDACYEN-N 100
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
I +V S+ + + +E P++ Y +SK E +++
Sbjct: 101 ISNIVYAST-ISAY--SDE--TSLPWNEKELPLPDLM------YGVSKLACEHIGNIYSR 149
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLS-----LIKGAQTYPNVTFG-------WV 231
+K + + + A + G + +++ G Q + ++
Sbjct: 150 KKGLCIKNLRFAHLYGFNEKN------NYMINRFFRQAFHGEQ--LTL-HANSVAKREFL 200
Query: 232 NVKDVANAHIQAFEVPSANGRYCL--VERVSHYSEIVNIIRELYPAFQLPEKCADDKP-H 288
KD A + I A + +G + + + ++ E+ N I + +
Sbjct: 201 YAKDAAKSVIYALKQEKVSGTFNIGSGDALT-NYEVANTINNAFGNKDNLLVKNPNANEG 259
Query: 289 VPTYQVLKEKVKNLGIEFIPVEVSLKETIESLKE 322
+ + + K K L ++F + + +E +
Sbjct: 260 IHSSYMDSSKAKEL-LDFST-DYNFATAVEEIHL 291
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 6e-14
Identities = 64/364 (17%), Positives = 107/364 (29%), Gaps = 73/364 (20%)
Query: 2 SSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTV----KASVRDPNDPKKTRHLLALDG 57
S G V V G GY L + Y V R + L +
Sbjct: 4 SHHHHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIAS 63
Query: 58 ASERLQLFKANLLEEGSFDSIVDGCD--------------GVCHTA-------SPFYHDA 96
+R+ +KA + + D CD V H S D
Sbjct: 64 IHDRISRWKALTGKSIEL-YVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYS--MIDR 120
Query: 97 KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156
V V GTLNVL + +F +V +M TP++ ++E + +
Sbjct: 121 SRA-VYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEY------GTPNIDIEEGYITI 173
Query: 157 PEVCKQSEL--------WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL-- 206
+ L +Y LSK K I +N +V G T
Sbjct: 174 THNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMH 233
Query: 207 ---------NTSAAAVLSLI--KGAQTYPNVTFG-------WVNVKDVANAHIQAFEVPS 248
+ L+ + A +P +G +++++D A P+
Sbjct: 234 EELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPA 293
Query: 249 ANGRYCLV----ERVSHYSEIVNIIRELYPAFQLPEK----CADDKP-HVPTYQVLKEKV 299
G + + E+ S +E+ +++ + L K Y K+
Sbjct: 294 KAGEFRVFNQFTEQFS-VNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL 352
Query: 300 KNLG 303
LG
Sbjct: 353 MELG 356
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 3e-13
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 21/146 (14%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
M+ K + V GA+G + L+++ + G+ V+A V L A+
Sbjct: 1 MAQ----QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL-IAEELQAIPNV-- 53
Query: 61 RLQLFKANLL-EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
LF+ LL D++ +G + + + ++ ++
Sbjct: 54 --TLFQGPLLNNVPLMDTLFEGAHLA-FINTTSQAGDEIAIGK----------DLADAAK 100
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTP 145
+ +I+ + +S L P P
Sbjct: 101 RAGTIQHYIYSSMPDHSLYGPWPAVP 126
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 4e-13
Identities = 42/275 (15%), Positives = 82/275 (29%), Gaps = 46/275 (16%)
Query: 5 AAAAGKVVCVTGASGYIASWLVKLLLSR---GYTVKASVRDPNDPK-KTRHLLAL----- 55
+ + V +TGA+G++ +LV LL R + VR +D + R
Sbjct: 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDP 128
Query: 56 -------DGASERLQLFKANL------LEEGSFDSIVDGCDGVCHTASP--FYHDAKDPQ 100
+ A++RL++ + L++ + + + D + +A+ + P
Sbjct: 129 ELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAF-----PY 183
Query: 101 VELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160
EL P V GT ++ +K S+ + V
Sbjct: 184 HELFGPNVAGTAELIRIALTTK-LKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVD 242
Query: 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220
Y SK E + ++ + M++ + V ++
Sbjct: 243 GGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSL 302
Query: 221 QT---YPNV-------------TFGWVNVKDVANA 239
P F + V VA A
Sbjct: 303 MATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEA 337
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 47/270 (17%), Positives = 89/270 (32%), Gaps = 61/270 (22%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVK-----ASVRDPNDPKKTRHLLALDGASERLQL 64
KV +TG +G+I S L++ LL V A+ N L + +
Sbjct: 28 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRN--LDEVRSLVSEKQWSNFKF 85
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTA----------SPF-YHDAKDPQVELLDPAVKGTLN 113
+ ++ ++ G D V H A P + + G LN
Sbjct: 86 IQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATN----------IDGFLN 135
Query: 114 VLNSCAKFPSIKRVVLTSSMAAV--LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK 171
+L + ++ +S ++ + G P+ D + P S Y ++K
Sbjct: 136 MLIAARDAK-VQSFTYAAS-SSTYGDHPGLPKVEDTIG------KP----LSP--YAVTK 181
Query: 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLS-----LIKGAQTYPNV 226
+ E A F++ + + V G P N + AAV+ +I+G
Sbjct: 182 YVNELYADVFSRCYGFSTIGLRYFNVFGRRQDP--NGAYAAVIPKWTSSMIQGD---DVY 236
Query: 227 TFG-------WVNVKDVANAHIQAFEVPSA 249
G + +++ A++ A
Sbjct: 237 INGDGETSRDFCYIENTVQANLLAATAGLD 266
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 2e-12
Identities = 59/282 (20%), Positives = 99/282 (35%), Gaps = 55/282 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S LV L+ GY V V D N + ++ +L +L +
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEV--VVVD-N--LSSGRREFVN---PSAELHVRDLKD 54
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA------VKGTLNVLNSCAKFPSIK 125
I D V H A+ + ++ +P V T NVL + ++
Sbjct: 55 YSWGAGI--KGDVVFHFAAN-----PEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVR 106
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
VV SS + V G + E P Y +K E +A+
Sbjct: 107 TVVFASS-STVY--GDA--DVIPTPEEEPYKPISV------YGAAKAAGEVMCATYARLF 155
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT--FG-------WVNVKDV 236
+ + + A V+GP L+ + I + PNV G ++ V+D
Sbjct: 156 GVRCLAVRYANVVGPRLRH------GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDA 209
Query: 237 ANAHIQAFEVPSANGRYCLV------ERVSHYSEIVNIIREL 272
A + A++ L + V +I I+ E+
Sbjct: 210 VEATLAAWKKFEEMDAPFLALNVGNVDAVR-VLDIAQIVAEV 250
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 4e-12
Identities = 45/295 (15%), Positives = 85/295 (28%), Gaps = 52/295 (17%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLLALDGASERLQLFKANL 69
+ + GA+G + L + L+ G V D + G + A+L
Sbjct: 17 IAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSG---AVDARAADL 73
Query: 70 LEEGSFDSIVD-GCDGVCHTAS----------PFYHDAKDPQVELLDPAVKGTLNVLNSC 118
G + +V+ D + H A+ + + GT + ++
Sbjct: 74 SAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRIN----------LDGTRYLFDAI 123
Query: 119 ----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLA 174
K RVV TSS AV G P P + + + + P Y K +
Sbjct: 124 RIANGKDGYKPRVVFTSS-IAVF--GAP-LPY-PIPDEFHTTPLTS------YGTQKAIC 172
Query: 175 EDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG----- 229
E +++ D + I + +P S L + V
Sbjct: 173 ELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIR 232
Query: 230 --WVNVKDVANAHIQAFEVPSAN--GRYCLVERVSHYS--EIVNIIRELYPAFQL 278
+ + I + R L + E + +R++ +
Sbjct: 233 HWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAV 287
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 5e-12
Identities = 34/242 (14%), Positives = 62/242 (25%), Gaps = 52/242 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
V + GA G IA ++ L + R P Q+ ++L
Sbjct: 26 VLILGAGGQIARHVINQLADKQTIKQTLFARQPAK--------IHKPYPTNSQIIMGDVL 77
Query: 71 EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
+ + G D V + + +V+ + K +KR++
Sbjct: 78 NHAALKQAMQGQDIVYANLTG-------------EDLDIQANSVIAA-MKACDVKRLIFV 123
Query: 131 SSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLV 190
S+ + DE E A DA + ++
Sbjct: 124 LSLG-------------IYDEVPGKFVEWNNAVIGEPLKPFRRAADAI----EASGLEYT 166
Query: 191 TINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
+ PA L L + + V+ K VA + P +
Sbjct: 167 ILRPAW---------LTDEDIIDYELTSRNEPFKG---TIVSRKSVAALITDIIDKPEKH 214
Query: 251 GR 252
Sbjct: 215 IG 216
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 5e-12
Identities = 52/282 (18%), Positives = 94/282 (33%), Gaps = 55/282 (19%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
++ VTG +G+I S +V L + V D N + + ++ E +L KA+L
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLS-ESNEIV--VID-N--LSSGNEEFVN---EAARLVKADL 52
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVE--LLDPA------VKGTLNVLNSCAKF 121
+ + G + V H A+ +P V +P V T +L + K
Sbjct: 53 AAD-DIKDYLKGAEEVWHIAA-------NPDVRIGAENPDEIYRNNVLATYRLLEAMRKA 104
Query: 122 PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKF 181
+ R+V TS+ + V G+ + E + + P S Y SK E +
Sbjct: 105 -GVSRIVFTST-STVY--GEA--KVIPTPEDYPTHP----ISL--YGASKLACEALIESY 152
Query: 182 AKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT--FG-------WVN 232
+ A VIG ++ + I + P G ++
Sbjct: 153 CHTFDMQAWIYRFANVIGR------RSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIY 206
Query: 233 VKDVANAHIQAFEVPSANGRYCLVERVSHYS--EIVNIIREL 272
+ D +A + + + I I+ E
Sbjct: 207 ISDCVDAMLFGLRGDERVNIFNIGSEDQ-IKVKRIAEIVCEE 247
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 6e-12
Identities = 57/267 (21%), Positives = 100/267 (37%), Gaps = 62/267 (23%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKA----SVRDPNDPKKTRHLLALDGASERLQLFKA 67
V VTG +G+I S +V+ LL+RG V + T + + + F+
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLA---------TGKRENVP---KGVPFFRV 50
Query: 68 NLLEEGSFDSIVDGC--DGVCHTASPFYHDAKDPQVE--LLDPA------VKGTLNVLNS 117
+L ++ + V H A A+ V+ + DP + G LN+L +
Sbjct: 51 DLRDKEGVERAFREFRPTHVSHQA------AQ-ASVKVSVEDPVLDFEVNLLGGLNLLEA 103
Query: 118 CAKFPSIKRVVLTSSMAAVLNTGKPRTPDVV-VDETWFSDPEVCKQSELWYPLSKTLAED 176
C ++ ++++V S+ A+ G+ P+ +ETW P+ Y SK E
Sbjct: 104 CRQY-GVEKLVFASTGGAIY--GE--VPEGERAEETWPPRPKSP------YAASKAAFEH 152
Query: 177 AAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI--KGAQTYPNVTFGW---- 230
+ + + V++ V GP P A V+++ + + P +
Sbjct: 153 YLSVYGQSYGLKWVSLRYGNVYGPRQDP---HGEAGVVAIFAERVLKGLPVTLYARKTPG 209
Query: 231 --------VNVKDVANAHIQAFEVPSA 249
V V DVA AH A
Sbjct: 210 DEGCVRDYVYVGDVAEAHALALFSLEG 236
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 25/158 (15%), Positives = 59/158 (37%), Gaps = 32/158 (20%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVK-----ASVRDPNDPKKTRHLLALDGASERLQ 63
K +TG +G+I S L++ LL V ++ N + + L++ + R
Sbjct: 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYN-LDEVKTLVSTE-QWSRFC 82
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTA----------SPF-YHDAKDPQVELLDPAVKGTL 112
+ ++ + + + ++ G D V H A P + + G L
Sbjct: 83 FIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATN----------ITGFL 132
Query: 113 NVLNSCAKFPSIKRVVLTSSMAAV--LNTGKPRTPDVV 148
N+L++ ++ +S ++ + P+ + +
Sbjct: 133 NILHAAKNAQ-VQSFTYAAS-SSTYGDHPALPKVEENI 168
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 4e-11
Identities = 63/354 (17%), Positives = 110/354 (31%), Gaps = 78/354 (22%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
G+++ VTG +G+I S +VK L +G T V + D K +L+ L+ A + K
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADY---MDKE 101
Query: 68 NLLEEGSFDSIVDGCDGVCHTA---SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+ L + + + H S D ++D + + +L+ C +
Sbjct: 102 DFLIQIMAGEEFGDVEAIFHEGACSSTTEWD-GKY---MMDNNYQYSKELLHYCLERE-- 155
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
+ SS AA ++ + P + SK L ++ + E
Sbjct: 156 IPFLYASS-AATYGGR----TSDFIESREYEKPLNV------FGYSKFLFDEYVRQILPE 204
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLS-----LIKGAQTYPNVTFGW--------V 231
+ +V V GP S A+V L G F V
Sbjct: 205 ANSQIVGFRYFNVYGPREGH--KGSMASVAFHLNTQLNNGESP---KLFEGSENFKRDFV 259
Query: 232 NVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNI-------IRELYPAFQLPEKCAD 284
V DVA+ ++ E S I N+ + + A
Sbjct: 260 YVGDVADVNLWFLENG--------------VSGIFNLGTGRAESFQAVADA--TLAYHKK 303
Query: 285 DKP-HVPTYQVLK-----------EKVKNLG--IEFIPVEVSLKETIESLKEKG 324
+ ++P LK ++ G F V + E + L
Sbjct: 304 GQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA 357
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 41/266 (15%), Positives = 65/266 (24%), Gaps = 52/266 (19%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K V + GASG L+K +L +G V R R L + A + +
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGR--------RKLTFDEEAYKNVNQEVV 70
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ + + S G D A +D L K
Sbjct: 71 DFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVD--RDYVLKSAELAKAGG-CKHF 127
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
L SS A K S Y K E +E
Sbjct: 128 NLLSSKGA------------------------DKSSNFLYLQVKGEVEAK----VEELKF 159
Query: 188 DLVTI-NPAMVIGPLLQPTLNTSAAAVLS-LIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245
D ++ P +++ + + + V V V A +
Sbjct: 160 DRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPD----SWASGHSVPVVTVVRAMLNNVV 215
Query: 246 VPSANGRYCLVERVSHYSEIVNIIRE 271
P L I ++ +
Sbjct: 216 RPRDKQMELL-----ENKAIHDLGKA 236
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 1e-10
Identities = 44/267 (16%), Positives = 79/267 (29%), Gaps = 62/267 (23%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TGA G++ L L S V ++
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEE----------------------- 39
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+S + D + H A + + + E V +VL+ + ++L+S
Sbjct: 40 ---LESALLKADFIVHLAGV--NRPEHDK-EFSLGNVSYLDHVLDILTRNTKKPAILLSS 93
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
S+ A P Y SK E ++A+E +
Sbjct: 94 SIQA-----TQDNP---------------------YGESKLQGEQLLREYAEEYGNTVYI 127
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQT----YPNVTFGWVNVKDVANAHIQAFEV- 246
+ G +P N+ A I + NV V D+ +A E
Sbjct: 128 YRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGT 187
Query: 247 PSANGRYCLVERVSHYS--EIVNIIRE 271
P+ V V + EIV+++ +
Sbjct: 188 PTIENGVPTVPNVFKVTLGEIVDLLYK 214
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 37/327 (11%), Positives = 92/327 (28%), Gaps = 69/327 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + G G + L + L ++G+ V R +Q A++
Sbjct: 6 ILIAGC-GDLGLELARRLTAQGHEVTGLRRSA------------QPMPAGVQTLIADVTR 52
Query: 72 EGSFDSIVDG-CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
+ SIV + + + + + + ++ ++ G N L++ P ++ V
Sbjct: 53 PDTLASIVHLRPEILVYCVAASEYSDEHYRLSYVE----GLRNTLSALEGAP-LQHVFFV 107
Query: 131 SSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLV 190
SS V + + +DE + K + E A
Sbjct: 108 SS-TGVY----GQEVEEWLDEDTPPIAK--------DFSGKRMLE--AEALLAA--YSST 150
Query: 191 TINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY--PNVTFGWVNVKDVANAHIQAFEVPS 248
+ + + GP ++ + + + N ++ D A + S
Sbjct: 151 ILRFSGIYGP--------GRLRMIRQAQTPEQWPARNAWTNRIHRDDGAAFIAYLIQQRS 202
Query: 249 ANGRYCLVERVSHYSEIVNI-------IRELYP----AFQLPEKCADDKPHVPTYQVLKE 297
+ + + +L + P ++
Sbjct: 203 HAVP----------ERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATPPVQGNKKLSNA 252
Query: 298 KVKNLGIEFI-P-VEVSLKETIESLKE 322
++ G + I P + +++E
Sbjct: 253 RLLASGYQLIYPDYVSGYGALLAAMRE 279
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 2e-10
Identities = 46/299 (15%), Positives = 78/299 (26%), Gaps = 99/299 (33%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD----GASERLQLFKA 67
+ +TG +G+I L + L++ G V LD +
Sbjct: 10 ILITGGAGFIGGHLARALVASGEEV----------------TVLDDLRVPPMIPPE-GTG 52
Query: 68 NLLEEGSFDSI---VDGCDGVCHTASPFYHDAKDPQVELLDPA-----VKGTLNVLNSCA 119
LE+ + + V H AS K P V ++L C
Sbjct: 53 KFLEKPVLELEERDLSDVRLVYHLASH-----KSVPRSFKQPLDYLDNVDSGRHLLALCT 107
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAW 179
+ +VV+ S+ V G+ T + E P Y SK E A
Sbjct: 108 SV-GVPKVVVGST-CEVY--GQADT--LPTPEDSPLSPRSP------YAASKVGLEMVAG 155
Query: 180 KFAKEKSIDLVTI-----------NPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228
+ V I P ++ P L +L+
Sbjct: 156 AHQRASVAPEVGIVRFFNVYGPGERPDALV-----PRL------CANLLTRN---ELPVE 201
Query: 229 G-------WVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNI-------IRELY 273
G + + DV + + P +VN + ++
Sbjct: 202 GDGEQRRDFTYITDVVDKLVALANRP--------------LPSVVNFGSGQSLSVNDVI 246
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 21/128 (16%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TGA G+IAS + + L G+ V AS D KK H+ E +L
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTEDMFCDE---FHLVDLRV 83
Query: 72 EGSFDSIVDGCDGVCHTASP-------FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+ + +G D V + A+ + + ++ + N++ + I
Sbjct: 84 MENCLKVTEGVDHVFNLAADMGGMGFIQSNHS-----VIMYNNTMISFNMIEAARIN-GI 137
Query: 125 KRVVLTSS 132
KR SS
Sbjct: 138 KRFFYASS 145
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 5e-10
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 16/129 (12%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V +TG G I S + +LLL RG V D T L L + ++ +
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVGI-----DNFATGRREHLKD-HPNLTFVEGSIAD 77
Query: 72 EGSFDSIVDGC--DGVCHTASPFYHDAKDPQVELLDPA--VKGTLNVLNSCAKFPSIKRV 127
+ ++ D V HTA+ KDP D G NV+ + K ++ R
Sbjct: 78 HALVNQLIGDLQPDAVVHTAA----SYKDPDDWYNDTLTNCVGGSNVVQAAKKN-NVGRF 132
Query: 128 VLTSSMAAV 136
V + A
Sbjct: 133 VYFQT-ALC 140
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 5e-10
Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 47/218 (21%)
Query: 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQL 64
+ K V + G +G+I L K +L + L+ ER+
Sbjct: 20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWE--VFGMDMQTDRLGDLV----KHERMHF 73
Query: 65 FKANL-LEEGSFDSIVDGCDGVCHTASPF--YHDAKDPQVELLDPAVKGTLNVLNSCAKF 121
F+ ++ + + + V CD + + K P + + + + L ++ S K+
Sbjct: 74 FEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQP-LRVFELDFEANLPIVRSAVKY 132
Query: 122 PSIKRVVLTSSMAAVLNT----GKPRTPDVVVDETWFSDPEVCKQSE--LW--------- 166
K +V S T G +D + + +
Sbjct: 133 G--KHLVFPS-------TSEVYGMC------------ADEQFDPDASALTYGPINKPRWI 171
Query: 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP 204
Y SK L + W + E ++ P IGP L
Sbjct: 172 YACSKQLMDRVIWGYGMEG-LNFTLFRPFNWIGPGLDS 208
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 65/350 (18%), Positives = 109/350 (31%), Gaps = 78/350 (22%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S +VK L +G T V + D K +L+ L+ A + K + L
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADY---MDKEDFLI 58
Query: 72 EGSFDSIVDGCDGVCHTA---SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
+ + + H S D K ++D + + +L+ C + +
Sbjct: 59 QIMAGEEFGDVEAIFHEGACSSTTEWDGK----YMMDNNYQYSKELLHYCLERE--IPFL 112
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
SS AA G ++ + P Y SK L ++ + E +
Sbjct: 113 YASS-AATY--GGR--TSDFIESREYEKPLNV------YGYSKFLFDEYVRQILPEANSQ 161
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLS-----LIKGAQTYPNVTFGW--------VNVKD 235
+V V GP S A+V L G F V V D
Sbjct: 162 IVGFRYFNVYGPREGH--KGSMASVAFHLNTQLNNGESP---KLFEGSENFKRDFVYVGD 216
Query: 236 VANAHIQAFEVPSANGRYCLVERVSHYSEIVNI-------IRELYPAFQLPEKCADDKP- 287
VA+ ++ E S I N+ + + A +
Sbjct: 217 VADVNLWFLENG--------------VSGIFNLGTGRAESFQAVADA--TLAYHKKGQIE 260
Query: 288 HVPTYQVLK-----------EKVKNLG--IEFIPVEVSLKETIESLKEKG 324
++P LK ++ G F V + E + L
Sbjct: 261 YIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA 310
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 45/267 (16%), Positives = 92/267 (34%), Gaps = 69/267 (25%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTV----------KASVRDPNDPKKTRHLLALDGASER 61
+ +TG +G + S L++ L +G+ + + +
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPP----------------VAG 66
Query: 62 LQLFKANLLEEGSFDSIVDGC--DGVCHTASPFYHDAKDPQVELLDPA---VKGTLNVLN 116
L + + ++ + G + D V H+A+ Y D D + A V+G++NV
Sbjct: 67 LSVIEGSVTDAGLLERAFDSFKPTHVVHSAA-AYKDPDDW----AEDAATNVQGSINVAK 121
Query: 117 SCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAED 176
+ +K +KR++ + A G+P V + + P Y +SKT E
Sbjct: 122 AASKA-GVKRLLNFQT-ALCY--GRP--ATVPIPIDSPTAPFTS------YGISKTAGE- 168
Query: 177 AAWKFAKEKSIDLVTI---NPA---MVIGPLLQPTLNTSAAAVLSLIKGAQT--YPNVTF 228
F + +V++ N + IGP+ PT A +
Sbjct: 169 ---AFLMMSDVPVVSLRLANVTGPRLAIGPI--PTFYKRLKAGQKCFCSDTVRDF----- 218
Query: 229 GWVNVKDVANAHIQAFEVPSANGRYCL 255
+++ D + + G + +
Sbjct: 219 --LDMSDFLAIADLSLQEGRPTGVFNV 243
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 4e-09
Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 49/240 (20%)
Query: 12 VCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL 70
+ + GA+G IA L LL+ + R + ER+ + + +
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK-----TRIPPEIIDHERVTVIEGSFQ 62
Query: 71 EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
G + V + V A + +++ + ++ +I+RV+
Sbjct: 63 NPGXLEQAVTNAEVVFVGAM---------------ESGSDMASIVKALSR-XNIRRVIGV 106
Query: 131 SSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLV 190
S L+ P + + Y + A + +E +++
Sbjct: 107 SMAG--LSGEFPVALEKWTFDNLPIS----------YVQGERQARNV----LRESNLNYT 150
Query: 191 TINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSAN 250
+ + N LI + + V+ + V A
Sbjct: 151 ILRLTWLY--------NDPEXTDYELIPEGAQFND---AQVSREAVVKAIFDILHAADET 199
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 6e-09
Identities = 35/213 (16%), Positives = 66/213 (30%), Gaps = 50/213 (23%)
Query: 12 VCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL- 69
V + G +G+I + L + LL Y V D L + ++
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEV--YGLD-IGSDAISRFL----NHPHFHFVEGDIS 55
Query: 70 LEEGSFDSIVDGCDGVCHTASP----FYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
+ + V CD V + Y ++P + + + + L ++ C K+ K
Sbjct: 56 IHSEWIEYHVKKCDVVLPLVAIATPIEY--TRNP-LRVFELDFEENLRIIRYCVKYR--K 110
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL--------------SK 171
R++ S T +V + E L SK
Sbjct: 111 RIIFPS------------TSEV------YGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSK 152
Query: 172 TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP 204
L + W + +++ + P +GP L
Sbjct: 153 QLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDN 185
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 35/280 (12%), Positives = 88/280 (31%), Gaps = 59/280 (21%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGAS 59
M K+V V G +G + + LL G + V+ R+P L L GA
Sbjct: 2 MVDK-----KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKE--LRLQGA- 53
Query: 60 ERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
++ + + ++ + ++G + + +++ +V+ + +
Sbjct: 54 ---EVVQGDQDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQ-------GKLLADLAR 103
Query: 120 KFPSIKRVVLTSSM-AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAA 178
+ + VV + L G+ + K E+
Sbjct: 104 RLG-LHYVVYSGLENIKKLTAGRLAAA---------------------HFDGKGEVEE-- 139
Query: 179 WKFAKEKSIDLVTINPA----MVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVK 234
+ ++ + + ++ ++ L + +LSL +V ++V
Sbjct: 140 --YFRDIGVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPT-----GDVPMDGMSVS 192
Query: 235 DVANAHIQAFEVPS--ANGRYCLV-ERVSHYSEIVNIIRE 271
D+ + ++P L R + E ++ +
Sbjct: 193 DLGPVVLSLLKMPEKYVGQNIGLSTCRHT-AEEYAALLTK 231
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 3e-08
Identities = 54/322 (16%), Positives = 94/322 (29%), Gaps = 82/322 (25%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL----LALDGASERLQ 63
G ++ G GY A L + L +G+ + + R+P+ + R L G L
Sbjct: 5 TGTLLSF-GH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSL- 61
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
DG + + +P DP + L + A+
Sbjct: 62 ----------------DGVTHLLISTAP--DSGGDPVLAALGDQIA---------ARAAQ 94
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
+ V S+ AV VDET P + +
Sbjct: 95 FRWVGYLST-TAVY----GDHDGAWVDETTPLTPT--------AARGRWRVMAEQQ-WQA 140
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243
++ L A + GP P + +IK Q F ++V+D+A +
Sbjct: 141 VPNLPLHVFRLAGIYGPGRGPFSKLGKGGIRRIIKPGQ-----VFSRIHVEDIAQVLAAS 195
Query: 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLG 303
P + N+ DD+P VP V+ + G
Sbjct: 196 MARPDPG-------------AVYNV--------------CDDEP-VPPQDVIAYAAELQG 227
Query: 304 IEFIPVEVSLKETIESLKEKGF 325
+ +P V + + + F
Sbjct: 228 LP-LPPAVDFDKADLTPMARSF 248
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 8e-07
Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 53/201 (26%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKA-----SVRDPNDPKKTRHLLALDGASER 61
K + +TG +G++ S L L+ G+ V + R N H + E
Sbjct: 25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRN----VEHWI----GHEN 76
Query: 62 LQLFKANLLEEGSFDSIVDGCDGVCHTASPF--YHDAKDPQVELLDPAVKGTLNVLNSCA 119
+L +++E + D + H ASP + +P ++ L GTLN+L
Sbjct: 77 FELINHDVVEP-----LYIEVDQIYHLASPASPPNYMYNP-IKTLKTNTIGTLNMLGLAK 130
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW------------Y 167
+ R++L S T +V + DPEV QSE + Y
Sbjct: 131 RVG--ARLLLAS------------TSEV------YGDPEVHPQSEDYWGHVNPIGPRACY 170
Query: 168 PLSKTLAEDAAWKFAKEKSID 188
K +AE + + K++ ++
Sbjct: 171 DEGKRVAETMCYAYMKQEGVE 191
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 4e-06
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 1/99 (1%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V + G +GYI +V +S G+ R + + L +L +A+L +
Sbjct: 7 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD 66
Query: 72 EGSFDSIVDGCDGV-CHTASPFYHDAKDPQVELLDPAVK 109
+ D V A Q++L++ +
Sbjct: 67 HQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKE 105
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-06
Identities = 39/284 (13%), Positives = 89/284 (31%), Gaps = 62/284 (21%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN---DPKKTRHLLALDG 57
M S + + GA+GYI + K L G+ VR+ + +K + L +
Sbjct: 1 MGSR-----SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESF-- 53
Query: 58 ASERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNS 117
+ + ++ + S V D V T ++ +N++ +
Sbjct: 54 KASGANIVHGSIDDHASLVEAVKNVDVVISTVGS--------------LQIESQVNIIKA 99
Query: 118 CAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL--SKTLAE 175
+ ++KR + + +D + E + K
Sbjct: 100 IKEVGTVKRFFPSE---------------------FGNDVDNVHAVEPAKSVFEVKAKVR 138
Query: 176 DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP---NVTFGWVN 232
A + + I ++ G L+ + A + + + N +V
Sbjct: 139 RA----IEAEGIPYTYVSSNCFAGYFLRS---LAQAGLTAPPRDKVVILGDGNARVVFVK 191
Query: 233 VKDVANAHIQAFEVPSANGRYCLV----ERVSHYSEIVNIIREL 272
+D+ I+A + P + + +S +E+V + +
Sbjct: 192 EEDIGTFTIKAVDDPRTLNKTLYLRLPANTLS-LNELVALWEKK 234
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-06
Identities = 60/353 (16%), Positives = 105/353 (29%), Gaps = 78/353 (22%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKA 67
+ + +TG +G++ S L K V D + + +
Sbjct: 10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFK 69
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA------VKGTLNVLNSCAKF 121
+ ++ +D +H A +L+ + LN+L
Sbjct: 70 GEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARS- 128
Query: 122 PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKF 181
+V+ SS A V G + P PE Y SK + +F
Sbjct: 129 -KKAKVIYASS-AGVY--GNTKAP---NVVGKNESPENV------YGFSKLCMD----EF 171
Query: 182 AKEKSIDLVTI-----NPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT-FGW----- 230
S D V + N V GP +A+ VL L GA + V F +
Sbjct: 172 VLSHSNDNVQVGLRYFN---VYGPREFYK-EKTASMVLQLALGAMAFKEVKLFEFGEQLR 227
Query: 231 --VNVKDVANAHIQAFEVPS------ANGRYCLVERVSHYSEIVNIIRELY-----PAFQ 277
V ++DV A+++A + + S Y+EIV+I++E +
Sbjct: 228 DFVYIEDVIQANVKAMKAQKSGVYNVGYSQ-----ARS-YNEIVSILKEHLGDFKVTYIK 281
Query: 278 LPEK------CADDKPHVPTYQVLKEKVKNLG--IEFIPVEVSLKETIESLKE 322
P A E +E +K+ + +
Sbjct: 282 NPYAFFQKHTQAHI-----------EPTILDLDYTPLYDLESGIKDYLPHIHA 323
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 36/271 (13%), Positives = 74/271 (27%), Gaps = 57/271 (21%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ + G +GYI + +VK L G+ R + GA + K L E
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGA----IIVKGELDE 69
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
++ D V + P + +L + +IKR + +
Sbjct: 70 HEKLVELMKKVDVVISALAF--------------PQILDQFKILEAIKVAGNIKRFLPSD 115
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
+ + + + L + + + +E +I
Sbjct: 116 ---------------------FGVEEDRINALPPFEALIE--RKRMIRRAIEEANIPYTY 152
Query: 192 INPAM----VIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247
++ I LL+P V F +D+ I+ P
Sbjct: 153 VSANCFASYFINYLLRPYDPKDEITVY-------GTGEAKFAMNYEQDIGLYTIKVATDP 205
Query: 248 SA-NGRYCLV---ERVSHYSEIVNIIRELYP 274
A N ++ E+++ +
Sbjct: 206 RALNRVVIYRPSTNIIT-QLELISRWEKKIG 235
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-05
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGAS 59
+S V + G+V+ + GA+G+I ++ L R P P K + AL
Sbjct: 3 VSPVPSPKGRVL-IAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKAL--ED 59
Query: 60 ERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVK 109
+ + + E+ + + I+ + S ++ Q+ L+
Sbjct: 60 KGAIIVYGLINEQEAMEKILKEHEIDI-VVSTVGGESILDQIALVKAMKA 108
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 43/266 (16%), Positives = 77/266 (28%), Gaps = 61/266 (22%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFK 66
K V + GA+G L+ +LS V A R RL
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL------------AEHPRLDNPV 52
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQV-ELLDPAVKGTLNVLNSCAKFPSIK 125
L E + D +A + +D L V + +
Sbjct: 53 GPLAE--LLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVD--FDLPLAVGKRALEMG-AR 107
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
++ S++ A D +S ++Y K E A +E+
Sbjct: 108 HYLVVSALGA--------------------DA----KSSIFYNRVKGELEQA----LQEQ 139
Query: 186 SIDLVTI-NPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF 244
+TI P+++ GP + L AA ++ I + + + D+A A +
Sbjct: 140 GWPQLTIARPSLLFGPREEFRLAEILAAPIARILPGKYHG------IEACDLARALWRLA 193
Query: 245 EVPSANGRYCLVERVSHYSEIVNIIR 270
R E+ + +
Sbjct: 194 LEEGKGV------RFVESDELRKLGK 213
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 10/135 (7%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKA 67
GK V VTG +G+ WL L + G TVK S L ++ +Q
Sbjct: 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYS----LTAPTVPSLFETARVADGMQSEIG 64
Query: 68 NLLEEGSFDSIVDGC--DGVCHTAS-PFYHDA-KDPQVELLDPAVKGTLNVLNSCAKFPS 123
++ ++ + + V H A+ P + +P VE V GT+ +L +
Sbjct: 65 DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEP-VETYSTNVMGTVYLLEAIRHVGG 123
Query: 124 IKRVVLTSSMAAVLN 138
+K VV +S N
Sbjct: 124 VKAVVNITSDKCYDN 138
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 19/134 (14%)
Query: 14 VTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE 72
+TGA+G++ + + ++ VR+ K S R + + +
Sbjct: 5 LTGATGHLGTHITNQAIANHIDHFHIGVRNVE---KVPDDWR-GKVSVR----QLDYFNQ 56
Query: 73 GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132
S G D V H + + N++ + AK + ++
Sbjct: 57 ESMVEAFKGMDTV-VFIPSIIHPSFK--------RIPEVENLVYA-AKQSGVAHIIFIGY 106
Query: 133 MAAVLNTGKPRTPD 146
A N +P
Sbjct: 107 YADQHNNPFHMSPY 120
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 14 VTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+TGA+G + ++++ L+ + A VR+P + LA G + R +A+ +
Sbjct: 4 ITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ----ALAAQGITVR----QADYGD 55
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVK-GTLNVLNSCAKFPSIKRVVLT 130
E + S + G + + +S +++ A G +K + T
Sbjct: 56 EAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAG-------------VKFIAYT 102
Query: 131 SSMAA 135
S + A
Sbjct: 103 SLLHA 107
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 20/124 (16%)
Query: 14 VTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
VTGA+G + +++ LL + + A VR+ LA G ++ + +
Sbjct: 5 VTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST----LADQGV----EVRHGDYNQ 56
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
S G + + P Y + + NV+ + A+ +K + T
Sbjct: 57 PESLQKAFAGVSKLLFISGPHYDNTL---------LIVQHANVVKA-ARDAGVKHIAYTG 106
Query: 132 SMAA 135
A
Sbjct: 107 YAFA 110
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 8 AGKVVCVTGAS-GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRH---LLALDGASE-RL 62
K V +TGA G I + +++ LL G V + + T + + A GA L
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRF-SKQVTDYYQSIYAKYGAKGSTL 533
Query: 63 QLFKANLLEEGSF---DSIVD 80
+ N GS +++++
Sbjct: 534 IVVPFNQ---GSKQDVEALIE 551
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASER-LQL 64
+ + + + G +GYI ++V+ LS + R + + + +
Sbjct: 1 GSHMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTI 60
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVK 109
+ + E S++ D V Q+ +++
Sbjct: 61 IEGEMEEHEKMVSVLKQVDIVISALPF---PMISSQIHIINAIKA 102
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK--TRHLLALDGASERLQLFKANL 69
+ + G +G I +V + G A VR T+ L + S + L + ++
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDI 64
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVK 109
+ + + D V A + QV+++ +
Sbjct: 65 NDHETLVKAIKQVDIVICAAGR---LLIEDQVKIIKAIKE 101
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 18/76 (23%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
+TG+ G + L L + G+ V VR P K D + L
Sbjct: 152 ITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF----WDPLNPASDLL-------- 199
Query: 74 SFDSIVDGCDGVCHTA 89
DG D + H A
Sbjct: 200 ------DGADVLVHLA 209
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 328 | |||
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.98 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.97 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.97 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.97 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.97 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.97 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.97 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.96 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.96 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.96 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.96 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.96 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.96 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.96 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.96 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.96 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.95 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.95 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.95 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.95 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.95 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.95 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.95 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.95 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.95 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.95 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.95 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.95 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.95 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.95 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.95 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.95 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.95 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.95 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.95 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.95 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.95 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.95 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.95 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.95 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.95 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.94 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.94 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.94 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.94 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.94 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.94 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.94 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.94 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.94 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.94 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.94 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.94 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.94 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.94 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.94 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.94 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.94 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.94 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.94 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.94 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.94 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.94 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.94 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.94 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.94 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.94 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.94 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.94 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.94 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.94 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.94 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.94 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.94 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.94 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.94 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.94 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.94 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.94 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.94 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.94 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.94 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.94 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.94 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.94 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.94 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.94 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.94 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.94 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.94 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.94 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.94 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.94 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.94 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.94 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.94 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.94 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.94 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.94 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.94 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.94 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.94 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.94 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.94 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.94 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.94 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.94 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.94 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.94 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.94 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.94 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.94 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.93 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.93 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.93 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.93 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.93 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.93 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.93 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.93 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.93 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.93 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.93 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.93 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.93 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.93 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.93 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.93 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.93 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.93 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.93 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.93 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.93 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.93 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.93 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.93 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.93 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.93 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.93 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.93 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.93 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.93 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.93 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.93 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.93 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.93 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.93 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.93 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.93 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.93 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.93 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.93 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.93 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.93 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.93 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.93 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.93 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.93 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.93 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.93 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.93 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.93 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.93 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.93 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.92 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.92 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.92 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.92 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.92 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.92 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.92 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.92 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.92 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.92 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.92 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.92 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.92 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.92 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.92 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.92 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.92 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.92 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.92 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.92 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.92 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.92 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.92 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.92 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.92 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.92 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.92 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.92 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.92 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.91 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.91 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.91 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.91 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.91 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.91 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.91 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.91 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.91 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.91 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.9 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.9 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.9 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.9 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.9 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.89 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.89 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.88 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.88 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.86 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.86 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.86 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.85 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.84 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.84 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.84 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.81 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.81 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.8 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.73 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.72 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.71 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.71 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.69 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.68 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.66 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.65 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.64 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.48 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.48 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.33 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.3 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 99.22 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 99.09 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 99.07 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.04 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.98 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.95 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.89 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.84 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.82 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.75 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.71 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.69 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.62 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.61 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.6 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.56 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.56 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.54 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.54 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.44 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.36 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.34 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.31 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.3 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.28 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.26 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.19 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 98.18 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.17 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.17 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.14 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.13 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.12 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.1 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.09 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.07 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.06 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.04 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.03 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.01 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 98.01 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.01 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.99 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.97 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.96 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.96 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.95 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.94 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.94 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.9 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.89 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.87 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.85 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.83 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.8 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.79 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.78 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.77 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.76 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.73 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.71 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.7 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.69 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.69 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.68 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.68 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.66 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.63 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.63 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.63 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.63 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.62 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.62 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.61 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 97.6 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.59 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.57 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.56 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.55 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.51 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.5 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.5 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.49 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.48 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.46 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.45 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.43 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.43 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.42 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.42 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.42 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.42 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 97.41 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.4 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.38 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.38 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.38 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.37 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.37 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.35 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 97.35 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.34 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.34 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.33 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.33 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.32 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.31 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.31 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.28 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.28 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.27 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.27 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.27 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.27 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 97.26 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.26 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 97.25 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 97.24 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.23 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.23 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.23 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.2 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 97.2 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 97.18 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.16 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 97.14 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.1 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.09 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.09 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.09 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.08 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.08 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.06 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.05 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.05 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.03 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 97.0 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 96.99 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 96.98 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.98 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.98 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 96.97 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 96.96 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.95 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.93 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.92 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.92 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.92 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.9 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.9 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.89 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.89 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.87 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.85 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.85 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 96.85 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.83 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.82 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.82 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 96.82 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.81 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.8 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 96.79 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.78 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.78 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 96.78 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.78 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 96.76 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.76 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.76 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.76 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.76 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.75 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 96.75 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 96.75 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.74 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.73 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.73 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.71 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.7 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.69 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 96.68 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 96.67 |
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=341.66 Aligned_cols=325 Identities=37% Similarity=0.610 Sum_probs=227.9
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|++....++|+|||||||||||++|+++|+++|++|+++.|+.+.......+.... ...+++++.+|++|++++.++++
T Consensus 1 ~~~~~~~~~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~ 79 (338)
T 2rh8_A 1 MATQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTDELSFEAPIA 79 (338)
T ss_dssp --------CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTTSSSSHHHHT
T ss_pred CCcCcCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCChHHHHHHHc
Confidence 66665555789999999999999999999999999999999765433221111111 12468899999999999999999
Q ss_pred CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccc-
Q 020266 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV- 159 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~- 159 (328)
++|+|||+|+.......++..+.+++|+.|+.+++++|.+.+++++|||+||.+++++.+.. ....+++|+++..+..
T Consensus 80 ~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~-~~~~~~~E~~~~~~~~~ 158 (338)
T 2rh8_A 80 GCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLD-GTGLVVDEKNWTDIEFL 158 (338)
T ss_dssp TCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHT-CSCCCCCTTTTTCC---
T ss_pred CCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcC-CCCcccChhhccchhhc
Confidence 99999999997543223333358899999999999999987348899999998766542211 0113667775433221
Q ss_pred -cccC-CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC-CCC--------CCCc
Q 020266 160 -CKQS-ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYP--------NVTF 228 (328)
Q Consensus 160 -~~~~-~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~ 228 (328)
+..+ ...|+.||.++|.+++.+++++|++++++||++||||............+.....+.+ .++ ...+
T Consensus 159 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 238 (338)
T 2rh8_A 159 TSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSV 238 (338)
T ss_dssp ----CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSE
T ss_pred cccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCcc
Confidence 0011 1259999999999999988778999999999999999865433222222323344432 111 1234
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCc-cc
Q 020266 229 GWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE-FI 307 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~-~~ 307 (328)
+|+|++|+|++++.+++++...|.||++++.+|+.|+++.+.+.++...+|...... .......+|++|+++|||+ .+
T Consensus 239 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~d~~k~~~lG~~p~~ 317 (338)
T 2rh8_A 239 SIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDF-PPKSKLIISSEKLVKEGFSFKY 317 (338)
T ss_dssp EEEEHHHHHHHHHHHHHCTTCCEEEEECSEEECHHHHHHHHHHHCTTSCCCCCCTTS-CSSCSCCCCCHHHHHHTCCCSC
T ss_pred cEEEHHHHHHHHHHHHcCCCcCCcEEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCC-CcCcceeechHHHHHhCCCCCC
Confidence 899999999999999987656678998887799999999999988754444332221 1122377899999779999 67
Q ss_pred cHHHHHHHHHHHHHHcCCCCC
Q 020266 308 PVEVSLKETIESLKEKGFVDF 328 (328)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~~~~ 328 (328)
+++++|+++++|+++++.+++
T Consensus 318 ~l~~gl~~~~~~~~~~~~~~~ 338 (338)
T 2rh8_A 318 GIEEIYDESVEYFKAKGLLQN 338 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999988764
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-47 Score=334.59 Aligned_cols=290 Identities=15% Similarity=0.156 Sum_probs=234.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+|+|||||||||||++|+++|+++|++|++++|++.... + .+++++.+|++ ++++.++++++|+|||+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~----------~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~ 69 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-I----------NDYEYRVSDYT-LEDLINQLNDVDAVVHL 69 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------------CCEEEECCCC-HHHHHHHTTTCSEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-C----------CceEEEEcccc-HHHHHHhhcCCCEEEEc
Confidence 478999999999999999999999999999999833322 1 26889999999 99999999999999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhh
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 168 (328)
|+..... .....+++|+.++.+++++|++. ++++|||+||.+ +|+.. ...+++|+++..|. +.|+
T Consensus 70 a~~~~~~---~~~~~~~~n~~~~~~ll~a~~~~-~~~r~v~~SS~~-vyg~~----~~~~~~E~~~~~p~------~~Y~ 134 (311)
T 3m2p_A 70 AATRGSQ---GKISEFHDNEILTQNLYDACYEN-NISNIVYASTIS-AYSDE----TSLPWNEKELPLPD------LMYG 134 (311)
T ss_dssp CCCCCSS---SCGGGTHHHHHHHHHHHHHHHHT-TCCEEEEEEEGG-GCCCG----GGCSBCTTSCCCCS------SHHH
T ss_pred cccCCCC---ChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccHH-HhCCC----CCCCCCCCCCCCCC------chhH
Confidence 9986543 33478899999999999999998 888999999965 55422 34678898877764 6799
Q ss_pred hhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CCCCccceeHHHHHHHHHHhh
Q 020266 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 169 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~~~~~~~ 244 (328)
.+|.++|.+++.++.+++++++++||+.+|||..... ..+..++..+..+.+ .+ +++.++|+|++|+|++++.++
T Consensus 135 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~ 213 (311)
T 3m2p_A 135 VSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN-YMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYAL 213 (311)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--C-CHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCC-CHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHH
Confidence 9999999999999998999999999999999986543 446667777777774 22 578899999999999999999
Q ss_pred cCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCC-CCCCCCceecchHHH-HhcCCc-cccHHHHHHHHHHHH
Q 020266 245 EVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCAD-DKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKETIESL 320 (328)
Q Consensus 245 ~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~ 320 (328)
+++..+++||+++ +.+|+.|+++.+++.+|........+. .........+|++|+ +.|||+ .++++++++++++|+
T Consensus 214 ~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~ 293 (311)
T 3m2p_A 214 KQEKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLLM 293 (311)
T ss_dssp TCTTCCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHHHH
T ss_pred hcCCCCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence 9876566999985 889999999999999985422222122 233445678999999 779999 669999999999999
Q ss_pred HHcCCC
Q 020266 321 KEKGFV 326 (328)
Q Consensus 321 ~~~~~~ 326 (328)
++++..
T Consensus 294 ~~~~~~ 299 (311)
T 3m2p_A 294 RGLDDV 299 (311)
T ss_dssp CC----
T ss_pred HhcccC
Confidence 887764
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=340.92 Aligned_cols=305 Identities=18% Similarity=0.187 Sum_probs=236.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG-- 81 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 81 (328)
.+++|+|||||||||||++|+++|+++| ++|++++|....... . .+......++++++.+|++|++.+.+++++
T Consensus 21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~-~-~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 98 (346)
T 4egb_A 21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNL-N-NVKSIQDHPNYYFVKGEIQNGELLEHVIKERD 98 (346)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCG-G-GGTTTTTCTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccch-h-hhhhhccCCCeEEEEcCCCCHHHHHHHHhhcC
Confidence 3457899999999999999999999999 677777775422111 1 111112235899999999999999999986
Q ss_pred ccEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020266 82 CDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (328)
Q Consensus 82 ~d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 160 (328)
+|+|||+|+..... ........+++|+.++.+++++|++. ++++|||+||.+ +|+.. ....+++|+++..|.
T Consensus 99 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~-vy~~~---~~~~~~~E~~~~~p~-- 171 (346)
T 4egb_A 99 VQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PHIKLVQVSTDE-VYGSL---GKTGRFTEETPLAPN-- 171 (346)
T ss_dssp CCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHS-TTSEEEEEEEGG-GGCCC---CSSCCBCTTSCCCCC--
T ss_pred CCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeCchH-HhCCC---CcCCCcCCCCCCCCC--
Confidence 99999999975432 23344588999999999999999998 889999999976 55432 134678898877664
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CCCCccceeHHHH
Q 020266 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDV 236 (328)
Q Consensus 161 ~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~ 236 (328)
+.|+.+|.++|.+++.++.+++++++++||+.+|||+.... ..+..++..+..+.+ .+ +++.++|+|++|+
T Consensus 172 ----~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 246 (346)
T 4egb_A 172 ----SPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE-KLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDH 246 (346)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-SHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHH
T ss_pred ----ChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCcc-chHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHH
Confidence 67999999999999999998899999999999999986543 445667777777774 22 4678899999999
Q ss_pred HHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCC-CCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHH
Q 020266 237 ANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQL-PEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVS 312 (328)
Q Consensus 237 a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~ 312 (328)
|++++.++.++..+++||+++ +.+++.|+++.+.+.+|.... .............+.+|++|+ +.|||+ .++++++
T Consensus 247 a~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~ 326 (346)
T 4egb_A 247 CSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQG 326 (346)
T ss_dssp HHHHHHHHHHCCTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCCCCHHHH
T ss_pred HHHHHHHHhcCCCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCCCCHHHH
Confidence 999999999876555999986 679999999999999985321 111122223345677999999 789999 6799999
Q ss_pred HHHHHHHHHHcC
Q 020266 313 LKETIESLKEKG 324 (328)
Q Consensus 313 l~~~~~~~~~~~ 324 (328)
|+++++||+++.
T Consensus 327 l~~~~~~~~~~~ 338 (346)
T 4egb_A 327 LQETVQWYEKNE 338 (346)
T ss_dssp HHHHHHHHHHCH
T ss_pred HHHHHHHHHhhh
Confidence 999999998864
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=342.08 Aligned_cols=305 Identities=16% Similarity=0.151 Sum_probs=239.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh-hhhhhhccC--CCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-TRHLLALDG--ASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
+++|+|||||||||||++|+++|+++|++|++++|+...... +........ ...+++++.+|++|++++.++++++|
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 102 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD 102 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence 457899999999999999999999999999999997664332 222211100 00479999999999999999999999
Q ss_pred EEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020266 84 GVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (328)
Q Consensus 84 ~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 162 (328)
+|||+|+..... ........+++|+.++.+++++|++. ++++|||+||++ +|+.. ...+++|+++..|.
T Consensus 103 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~-vyg~~----~~~~~~E~~~~~p~---- 172 (351)
T 3ruf_A 103 HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA-QVQSFTYAASSS-TYGDH----PALPKVEENIGNPL---- 172 (351)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGG-GGTTC----CCSSBCTTCCCCCC----
T ss_pred EEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEecHH-hcCCC----CCCCCccCCCCCCC----
Confidence 999999974321 11223477899999999999999998 788999999976 45432 34678898887654
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCCCC--C--CCCCccceeHHH
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQT--Y--PNVTFGWVNVKD 235 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~v~v~D 235 (328)
+.|+.+|.++|.+++.++.+++++++++||+.+|||+..... ..+..++..+..+.+. + +++.++|+|++|
T Consensus 173 --~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D 250 (351)
T 3ruf_A 173 --SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDN 250 (351)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHH
T ss_pred --ChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHH
Confidence 679999999999999999988999999999999999865431 3456677778887742 2 467899999999
Q ss_pred HHHHHHHhhcC-CCC-CCcEEEec-CccCHHHHHHHHHHhCCCCCCCCC-----CCCCCCCCCceecchHHH-HhcCCc-
Q 020266 236 VANAHIQAFEV-PSA-NGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEK-----CADDKPHVPTYQVLKEKV-KNLGIE- 305 (328)
Q Consensus 236 ~a~~~~~~~~~-~~~-~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~k~-~~lg~~- 305 (328)
+|++++.++.+ +.. +++||+++ +.+|+.|+++.+.+.+|....... ............+|++|+ +.|||+
T Consensus 251 va~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 330 (351)
T 3ruf_A 251 VIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRP 330 (351)
T ss_dssp HHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHHCCCC
T ss_pred HHHHHHHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHhCCCC
Confidence 99999999987 233 45999975 889999999999999875322111 111222335678999999 779999
Q ss_pred cccHHHHHHHHHHHHHHc
Q 020266 306 FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~ 323 (328)
.++++++|+++++||+++
T Consensus 331 ~~~~~~~l~~~~~~~~~~ 348 (351)
T 3ruf_A 331 NIKIREGLRLSMPWYVRF 348 (351)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 679999999999999875
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=332.57 Aligned_cols=317 Identities=39% Similarity=0.682 Sum_probs=233.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++|+|||||||||||++|+++|+++|++|+++.|+.+.......+........+++++.+|++|++++.++++++|+|||
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 83 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFH 83 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence 46899999999999999999999999999999998765433222211110013688999999999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccc--c-ccCC
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV--C-KQSE 164 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~--~-~~~~ 164 (328)
+|+.......++....+++|+.|+.+++++|++.+.+++|||+||.+++|+.. ....+++|+.+..... + ..+.
T Consensus 84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~---~~~~~~~E~~~~~~~~~~~~~~~~ 160 (337)
T 2c29_D 84 VATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQE---HQLPVYDESCWSDMEFCRAKKMTA 160 (337)
T ss_dssp CCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSS---SCCSEECTTCCCCHHHHHHHCCTT
T ss_pred eccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCC---CCCcccCcccCCchhhhcccCCcc
Confidence 99976433233434588999999999999999873378999999987777532 1234567776543221 0 0123
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC-CCC-CCCccceeHHHHHHHHHH
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYP-NVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~v~v~D~a~~~~~ 242 (328)
+.|+.||.++|.+++.++++++++++++||++||||..................|.+ .++ .....|+|++|+|++++.
T Consensus 161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~ 240 (337)
T 2c29_D 161 WMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHH
Confidence 469999999999999988778999999999999999765432221111111234432 111 122349999999999999
Q ss_pred hhcCCCCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCc-cccHHHHHHHHHHHHH
Q 020266 243 AFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE-FIPVEVSLKETIESLK 321 (328)
Q Consensus 243 ~~~~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~-~~~~~~~l~~~~~~~~ 321 (328)
+++++...|.|+++++.+|++|+++.+.+.++...+|............+.+|++|+++|||+ .++++++|+++++|++
T Consensus 241 ~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~e~l~~~~~~~~ 320 (337)
T 2c29_D 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCR 320 (337)
T ss_dssp HHHCTTCCEEEEECCEEEEHHHHHHHHHHHCTTSCCCSCCTTCCTTCCCCEECCHHHHHHTCCCCCCHHHHHHHHHHHHH
T ss_pred HhcCcccCceEEEeCCCCCHHHHHHHHHHHCCCccCCCCCCcccCCCccccccHHHHHHcCCCcCCCHHHHHHHHHHHHH
Confidence 998765667888888779999999999998865444443322222334577899999889999 7899999999999999
Q ss_pred HcCCCC
Q 020266 322 EKGFVD 327 (328)
Q Consensus 322 ~~~~~~ 327 (328)
+++.++
T Consensus 321 ~~~~~~ 326 (337)
T 2c29_D 321 AKGLLP 326 (337)
T ss_dssp HTTSSC
T ss_pred HcCCCC
Confidence 988754
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-46 Score=328.69 Aligned_cols=313 Identities=33% Similarity=0.544 Sum_probs=226.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
+|+|||||||||||++++++|+++|++|+++.| ++........+........+++++.+|++|++++.++++++|+|||
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 80 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH 80 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence 478999999999999999999999999999998 5432111111111100013588899999999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc--ccCCc
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC--KQSEL 165 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~--~~~~~ 165 (328)
+|+.......++....+++|+.|+.+++++|.+.+++++|||+||.+++++.+ ....+++|+++..+.+. ..+..
T Consensus 81 ~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~---~~~~~~~e~~~~~~~~~~~~~p~~ 157 (322)
T 2p4h_X 81 TASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNG---KDKDVLDESDWSDVDLLRSVKPFG 157 (322)
T ss_dssp CCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSS---SCCSEECTTCCCCHHHHHHHCCTT
T ss_pred cCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCC---CCCeecCCccccchhhhcccCccc
Confidence 99865322233334588999999999999998864578999999987676432 12346778765433210 01122
Q ss_pred -hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC-CCCCCCccceeHHHHHHHHHHh
Q 020266 166 -WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYPNVTFGWVNVKDVANAHIQA 243 (328)
Q Consensus 166 -~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~D~a~~~~~~ 243 (328)
.|+.||.++|.+++.++++++++++++||+.+|||............+.+...+.+ .++...++|+|++|+|++++.+
T Consensus 158 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~~ 237 (322)
T 2p4h_X 158 WNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYL 237 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCCEEEEEEEEHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCcCCCcCEEEHHHHHHHHHHH
Confidence 59999999999999998888999999999999999765432222222333345542 2333334899999999999999
Q ss_pred hcCCCCCCcEEEecCccCHHHHHHHHHHhCCCCCCCCC--CCCCCCCCCceecchHHHHhcCCc-cccHHHHHHHHHHHH
Q 020266 244 FEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK--CADDKPHVPTYQVLKEKVKNLGIE-FIPVEVSLKETIESL 320 (328)
Q Consensus 244 ~~~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~lg~~-~~~~~~~l~~~~~~~ 320 (328)
+.++...|.||++++.+|+.|+++.+.+.++..++|.. ...... ...+.+|++|+++|||+ .++++++|+++++|+
T Consensus 238 ~~~~~~~g~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~k~~~lG~~p~~~~~~~l~~~~~~~ 316 (322)
T 2p4h_X 238 LENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKG-ARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCC 316 (322)
T ss_dssp HHSCCCCEEEECCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTCCC-EECCEECCHHHHHTTCCCCCCHHHHHHHHHHHH
T ss_pred hhCcCCCCCEEEcCCCCCHHHHHHHHHHhCCCCCCCCCccccCCCC-CcceecccHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 98765567899667889999999999998865444432 111111 14577899999779999 679999999999999
Q ss_pred HHcCC
Q 020266 321 KEKGF 325 (328)
Q Consensus 321 ~~~~~ 325 (328)
++++.
T Consensus 317 ~~~~~ 321 (322)
T 2p4h_X 317 KEKGY 321 (322)
T ss_dssp HHHTC
T ss_pred HhcCC
Confidence 98875
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=323.86 Aligned_cols=293 Identities=19% Similarity=0.185 Sum_probs=227.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||+|||||||||||++|+++|+++|+.|.+..|+......+ ...++++.+|+++ +++.++++++|+|||+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~~---------~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~ 70 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFV---------NEAARLVKADLAA-DDIKDYLKGAEEVWHI 70 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGGS---------CTTEEEECCCTTT-SCCHHHHTTCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhhc---------CCCcEEEECcCCh-HHHHHHhcCCCEEEEC
Confidence 46899999999999999999999994444444444333221 3468999999999 9999999999999999
Q ss_pred cCCCC-CCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 89 ASPFY-HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 89 a~~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
|+... ....+.+...+++|+.++.+++++|++. ++++|||+||.+ +||.. ...+++|+.+..|. +.|
T Consensus 71 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~-vyg~~----~~~~~~E~~~~~~~------~~Y 138 (313)
T 3ehe_A 71 AANPDVRIGAENPDEIYRNNVLATYRLLEAMRKA-GVSRIVFTSTST-VYGEA----KVIPTPEDYPTHPI------SLY 138 (313)
T ss_dssp CCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEECCGG-GGCSC----SSSSBCTTSCCCCC------SHH
T ss_pred CCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCchH-HhCcC----CCCCCCCCCCCCCC------CHH
Confidence 99643 2334455688999999999999999987 788999999976 55432 34577888776653 679
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-C--CC--CCCCccceeHHHHHHHHHH
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-Q--TY--PNVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~--~~--~~~~~~~v~v~D~a~~~~~ 242 (328)
+.+|.++|.+++.++.+++++++++||+.+|||+... ..+..++.++..+. + .+ +++.++|+|++|+|++++.
T Consensus 139 ~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~ 216 (313)
T 3ehe_A 139 GASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTH--GVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLF 216 (313)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCC--SHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCc--ChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHH
Confidence 9999999999999999999999999999999998653 44666777777774 2 23 4678999999999999999
Q ss_pred hhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCC---CCCCCCceecchHHHHhcCCc-cccHHHHHHHHH
Q 020266 243 AFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCAD---DKPHVPTYQVLKEKVKNLGIE-FIPVEVSLKETI 317 (328)
Q Consensus 243 ~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~~~lg~~-~~~~~~~l~~~~ 317 (328)
++.....+++||+++ +.+|+.|+++.+++.+|.......... .........+|++|+++|||+ .++++++|++++
T Consensus 217 ~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~e~l~~~~ 296 (313)
T 3ehe_A 217 GLRGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKRLGWKPRYNSEEAVRMAV 296 (313)
T ss_dssp HTTCCSSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHHHHTCCCSCCHHHHHHHHH
T ss_pred HhccCCCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999554556999986 789999999999999985321111111 112233467899999779999 779999999999
Q ss_pred HHHHHcCC
Q 020266 318 ESLKEKGF 325 (328)
Q Consensus 318 ~~~~~~~~ 325 (328)
+||+++..
T Consensus 297 ~~~~~~~~ 304 (313)
T 3ehe_A 297 RDLVEDLD 304 (313)
T ss_dssp HHHHHHHH
T ss_pred HHHHhCcc
Confidence 99988654
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=329.23 Aligned_cols=305 Identities=18% Similarity=0.150 Sum_probs=236.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 85 (328)
++|+|||||||||||++++++|+++|++|++++|+.............. ...++.++.+|++|++++.++++ ++|+|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKI-TGKTPAFHETDVSDERALARIFDAHPITAA 82 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHH-HSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhh-cCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence 3679999999999999999999999999999999776654432222111 12478999999999999999998 89999
Q ss_pred EEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 86 CHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 86 ih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
||+||..... ..+.....+++|+.++.++++++++. ++++|||+||.+ +||.. ...+++|+.+..| .
T Consensus 83 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~-~~g~~----~~~~~~e~~~~~~------~ 150 (341)
T 3enk_A 83 IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER-AVKRIVFSSSAT-VYGVP----ERSPIDETFPLSA------T 150 (341)
T ss_dssp EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGG-GBCSC----SSSSBCTTSCCBC------S
T ss_pred EECccccccCccccChHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEecce-EecCC----CCCCCCCCCCCCC------C
Confidence 9999975321 11223477889999999999999998 788999999975 55432 3467888877665 3
Q ss_pred chhhhhhHHHHHHHHHHHHhcC-ccEEEEcCCcccCCCCCCC--------CcchHHHHHHHHhCC--C--C--------C
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKS-IDLVTINPAMVIGPLLQPT--------LNTSAAAVLSLIKGA--Q--T--------Y 223 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~-~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~--~--~--------~ 223 (328)
+.|+.+|.++|.+++.++.+++ ++++++||+++|||..... ...+..++.+...+. + . -
T Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (341)
T 3enk_A 151 NPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPD 230 (341)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTT
T ss_pred ChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCC
Confidence 6799999999999999998876 9999999999999964211 123444556655553 1 1 2
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC---CCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP---SANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV 299 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~---~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 299 (328)
+++.++|+|++|+|++++.++.++ ..+++||+++ +.+|+.|+++.+.+.+|........+........+.+|++|+
T Consensus 231 g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~ 310 (341)
T 3enk_A 231 GTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAA 310 (341)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHH
T ss_pred CCeeEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCCCCCccccccCHHHH
Confidence 467889999999999999999862 3455999975 889999999999999885321111222233345678999999
Q ss_pred -HhcCCc-cccHHHHHHHHHHHHHHcCC
Q 020266 300 -KNLGIE-FIPVEVSLKETIESLKEKGF 325 (328)
Q Consensus 300 -~~lg~~-~~~~~~~l~~~~~~~~~~~~ 325 (328)
+.|||+ .++++++|+++++||+++..
T Consensus 311 ~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 311 AETIGWKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence 889999 79999999999999998754
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=331.52 Aligned_cols=302 Identities=17% Similarity=0.157 Sum_probs=234.2
Q ss_pred Ccccc-cCCCCeEEEECCccHHHHHHHHHHHH--CCCeEEEEecCCCChh-------hhhhhhhccCCCCcEEEEEccCC
Q 020266 1 MSSVA-AAAGKVVCVTGASGYIASWLVKLLLS--RGYTVKASVRDPNDPK-------KTRHLLALDGASERLQLFKANLL 70 (328)
Q Consensus 1 ~~~~~-~~~~~~vlVtGatG~iG~~l~~~L~~--~g~~V~~~~r~~~~~~-------~~~~~~~~~~~~~~~~~~~~Dl~ 70 (328)
|+.|. .+++|+|||||||||||++|+++|++ .|++|++++|+..... .+...... ...++.++.+|++
T Consensus 1 M~~~~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~ 78 (362)
T 3sxp_A 1 MRYIDDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL--IGFKGEVIAADIN 78 (362)
T ss_dssp CCSSSCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG--TTCCSEEEECCTT
T ss_pred CcccchhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc--cccCceEEECCCC
Confidence 55444 45689999999999999999999999 9999999999665211 00111111 1346799999999
Q ss_pred CcCchHHh-hCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccc
Q 020266 71 EEGSFDSI-VDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 71 ~~~~~~~~-~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
|++++.++ ..++|+|||+||..... ...+...+++|+.++.+++++|++. +++ |||+||.+ +||.. ..++
T Consensus 79 d~~~~~~~~~~~~D~vih~A~~~~~~-~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~-~V~~SS~~-vyg~~-----~~~~ 149 (362)
T 3sxp_A 79 NPLDLRRLEKLHFDYLFHQAAVSDTT-MLNQELVMKTNYQAFLNLLEIARSK-KAK-VIYASSAG-VYGNT-----KAPN 149 (362)
T ss_dssp CHHHHHHHTTSCCSEEEECCCCCGGG-CCCHHHHHHHHTHHHHHHHHHHHHT-TCE-EEEEEEGG-GGCSC-----CSSB
T ss_pred CHHHHHHhhccCCCEEEECCccCCcc-ccCHHHHHHHHHHHHHHHHHHHHHc-CCc-EEEeCcHH-HhCCC-----CCCC
Confidence 99999998 78999999999975543 3445588999999999999999997 665 99999965 55432 2278
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCCC--CC-
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQ--TY- 223 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~--~~- 223 (328)
+|+++..|. +.|+.+|.++|.+++.++.+ ++++++||+++|||+..... ..+..++..+..+.+ .+
T Consensus 150 ~E~~~~~p~------~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (362)
T 3sxp_A 150 VVGKNESPE------NVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFE 221 (362)
T ss_dssp CTTSCCCCS------SHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSG
T ss_pred CCCCCCCCC------ChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEEC
Confidence 898877664 77999999999999998766 89999999999999865421 345566777777763 33
Q ss_pred -CCCCccceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCceecchHHH-
Q 020266 224 -PNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADD-KPHVPTYQVLKEKV- 299 (328)
Q Consensus 224 -~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~- 299 (328)
+++.++|+|++|+|++++.+++++. .|+||+++ +.+|+.|+++.+.+.+|...+ ...+.. ........+|++|+
T Consensus 222 ~g~~~~~~i~v~Dva~ai~~~~~~~~-~g~~~i~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~ 299 (362)
T 3sxp_A 222 FGEQLRDFVYIEDVIQANVKAMKAQK-SGVYNVGYSQARSYNEIVSILKEHLGDFKV-TYIKNPYAFFQKHTQAHIEPTI 299 (362)
T ss_dssp GGCCEEECEEHHHHHHHHHHHTTCSS-CEEEEESCSCEEEHHHHHHHHHHHHCCCEE-ECCC-------CCCCBCCHHHH
T ss_pred CCCeEEccEEHHHHHHHHHHHHhcCC-CCEEEeCCCCCccHHHHHHHHHHHcCCCce-EECCCCCcCcccceecCHHHHH
Confidence 4678999999999999999999875 45999975 889999999999999982211 111111 23345678999999
Q ss_pred HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 300 KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 300 ~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
+.|||+ .++++++|+++++||+++
T Consensus 300 ~~lG~~p~~~l~e~l~~~~~~~~~~ 324 (362)
T 3sxp_A 300 LDLDYTPLYDLESGIKDYLPHIHAI 324 (362)
T ss_dssp HHHCCCCCCCHHHHHHHHHHHHTCC
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999 679999999999999764
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=322.38 Aligned_cols=291 Identities=19% Similarity=0.192 Sum_probs=231.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|||||||||||++|+++|+++|++|++++|+........ ..+++++.+|++|++ +.+++++ |+|||+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A 70 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV--------NPSAELHVRDLKDYS-WGAGIKG-DVVFHFA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS--------CTTSEEECCCTTSTT-TTTTCCC-SEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc--------CCCceEEECccccHH-HHhhcCC-CEEEECC
Confidence 57999999999999999999999999999999766543211 357899999999998 8888887 9999999
Q ss_pred CCCC-CCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhh
Q 020266 90 SPFY-HDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (328)
Q Consensus 90 ~~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 168 (328)
+... ......+...+++|+.++.+++++|++. ++++|||+||.+ +|+.. ...+++|+.+..|. +.|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~-vyg~~----~~~~~~e~~~~~p~------~~Y~ 138 (312)
T 3ko8_A 71 ANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVRTVVFASSST-VYGDA----DVIPTPEEEPYKPI------SVYG 138 (312)
T ss_dssp SSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGG-GGCSC----SSSSBCTTSCCCCC------SHHH
T ss_pred CCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeCcHH-HhCCC----CCCCCCCCCCCCCC------ChHH
Confidence 9633 2223344578899999999999999987 788999999976 45432 34678888776653 6799
Q ss_pred hhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-C--CC--CCCCccceeHHHHHHHHHHh
Q 020266 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-Q--TY--PNVTFGWVNVKDVANAHIQA 243 (328)
Q Consensus 169 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~--~~--~~~~~~~v~v~D~a~~~~~~ 243 (328)
.+|.++|.+++.++.+++++++++||+++|||+... ..+..++.++..+. + .+ +++.++|+|++|+|++++.+
T Consensus 139 ~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~ 216 (312)
T 3ko8_A 139 AAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH--GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAA 216 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCS--SHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCC--ChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHH
Confidence 999999999999999899999999999999998653 34556777777774 2 23 45789999999999999999
Q ss_pred hcC---CC-CCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCC------CCCCCCCceecchHHH-HhcCCc-cccHH
Q 020266 244 FEV---PS-ANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCA------DDKPHVPTYQVLKEKV-KNLGIE-FIPVE 310 (328)
Q Consensus 244 ~~~---~~-~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~k~-~~lg~~-~~~~~ 310 (328)
+++ +. .+++||+++ +.+|+.|+++.+.+.++........+ ..........+|++|+ +.|||+ .++++
T Consensus 217 ~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~ 296 (312)
T 3ko8_A 217 WKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSA 296 (312)
T ss_dssp HHHHHHSCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCSSCHH
T ss_pred HHhccccCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCHH
Confidence 987 33 344999986 78999999999999987432111100 0122334578999999 999999 77999
Q ss_pred HHHHHHHHHHHHcC
Q 020266 311 VSLKETIESLKEKG 324 (328)
Q Consensus 311 ~~l~~~~~~~~~~~ 324 (328)
++|+++++|+++++
T Consensus 297 ~~l~~~~~~~~~~~ 310 (312)
T 3ko8_A 297 EAVKKTAEDLAKEL 310 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998875
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=330.13 Aligned_cols=293 Identities=18% Similarity=0.222 Sum_probs=231.8
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
...++|+|||||||||||++|+++|+++|++|++++|+... .+++++.+|++|++.+.++++++|+
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--------------~~~~~~~~Dl~d~~~~~~~~~~~d~ 80 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG--------------TGGEEVVGSLEDGQALSDAIMGVSA 80 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS--------------SCCSEEESCTTCHHHHHHHHTTCSE
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC--------------CCccEEecCcCCHHHHHHHHhCCCE
Confidence 34568899999999999999999999999999999998654 2578899999999999999999999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
|||+|+........ +...+++|+.++.+++++|++. ++++|||+||.+ +|+.. .....+++|+++..|.
T Consensus 81 vih~A~~~~~~~~~-~~~~~~~nv~~~~~ll~a~~~~-~~~~~V~~SS~~-vyg~~--~~~~~~~~E~~~~~~~------ 149 (347)
T 4id9_A 81 VLHLGAFMSWAPAD-RDRMFAVNVEGTRRLLDAASAA-GVRRFVFASSGE-VYPEN--RPEFLPVTEDHPLCPN------ 149 (347)
T ss_dssp EEECCCCCCSSGGG-HHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGG-GTTTT--SCSSSSBCTTSCCCCC------
T ss_pred EEECCcccCcchhh-HHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCHH-HhCCC--CCCCCCcCCCCCCCCC------
Confidence 99999975543322 2588999999999999999997 889999999976 55432 1245678898876654
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCccc-------------CCCCCCC----------CcchHHHHHHHHhCCC
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVI-------------GPLLQPT----------LNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~-------------G~~~~~~----------~~~~~~~~~~~~~~~~ 221 (328)
+.|+.+|.++|.+++.++++++++++++||+.+| ||+.... ...+..++.....+.+
T Consensus 150 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (347)
T 4id9_A 150 SPYGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEP 229 (347)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSC
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCC
Confidence 6799999999999999999999999999999999 7753321 2334455556666654
Q ss_pred C--C--CCCCccc----eeHHHHHHHHHHhhcCCC-CCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 020266 222 T--Y--PNVTFGW----VNVKDVANAHIQAFEVPS-ANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPT 291 (328)
Q Consensus 222 ~--~--~~~~~~~----v~v~D~a~~~~~~~~~~~-~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~ 291 (328)
. + +++.++| +|++|+|++++.++.++. .+++||+++ +.+|+.|+++.+.+.+|.. .+....+ .....
T Consensus 230 ~~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~p--~~~~~ 306 (347)
T 4id9_A 230 SHILARNENGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGLP-IVTVDFP--GDGVY 306 (347)
T ss_dssp CEEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCC-EEEEECS--SCCCB
T ss_pred eEEeCCCCcccCCccCcEeHHHHHHHHHHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCCC-CceeeCC--Ccccc
Confidence 2 2 4678899 999999999999999873 355999985 7899999999999998853 1111111 11126
Q ss_pred eecchHHH-HhcCCc-cccHHHHHHHHHHHHHHcCC
Q 020266 292 YQVLKEKV-KNLGIE-FIPVEVSLKETIESLKEKGF 325 (328)
Q Consensus 292 ~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~~ 325 (328)
..+|++|+ +.|||+ .++++++|+++++||+++..
T Consensus 307 ~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 342 (347)
T 4id9_A 307 YHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRLA 342 (347)
T ss_dssp CCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_pred cccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhh
Confidence 77899999 789999 67999999999999987643
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=324.97 Aligned_cols=306 Identities=16% Similarity=0.131 Sum_probs=235.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh-hhhhhhhhccC--CCCcEEEEEccCCCcCchHHhhCCc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDG--ASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
.++||+|||||||||||++|+++|+++|++|++++|+.... ..+..+..... ...+++++.+|++|++++.++++++
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence 35678999999999999999999999999999999976432 22222211110 0247899999999999999999999
Q ss_pred cEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 83 DGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 83 d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
|+|||+|+..... ....+...+++|+.++.+++++|++. ++++|||+||.++ |+.. ...+++|+++..|.
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~-~~~~----~~~~~~E~~~~~~~--- 174 (352)
T 1sb8_A 104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSST-YGDH----PGLPKVEDTIGKPL--- 174 (352)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGG-GTTC----CCSSBCTTCCCCCC---
T ss_pred CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHh-cCCC----CCCCCCCCCCCCCC---
Confidence 9999999974321 11233478899999999999999997 8889999999765 4322 23567888876553
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCCCC--C--CCCCccceeHH
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQT--Y--PNVTFGWVNVK 234 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~v~v~ 234 (328)
+.|+.+|.++|.+++.++.+++++++++||+.+|||...... ..+..++..+..+.+. . +++.++|+|++
T Consensus 175 ---~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~ 251 (352)
T 1sb8_A 175 ---SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIE 251 (352)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHH
T ss_pred ---ChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHH
Confidence 679999999999999998888999999999999999865431 3345566777777743 2 45778999999
Q ss_pred HHHHHHHHhhcCC-C-CCCcEEEec-CccCHHHHHHHHHHhC---CCCCC--CCCCCCCCCCCCceecchHHH-HhcCCc
Q 020266 235 DVANAHIQAFEVP-S-ANGRYCLVE-RVSHYSEIVNIIRELY---PAFQL--PEKCADDKPHVPTYQVLKEKV-KNLGIE 305 (328)
Q Consensus 235 D~a~~~~~~~~~~-~-~~g~~~~~~-~~~~~~el~~~i~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~k~-~~lg~~ 305 (328)
|+|++++.++.+. . .+++||+++ +.+|+.|+++.+.+.+ |.... +.+............+|++|+ +.|||+
T Consensus 252 Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 331 (352)
T 1sb8_A 252 NTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYA 331 (352)
T ss_dssp HHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCC
T ss_pred HHHHHHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhccCCHHHHHHHhCCC
Confidence 9999999998762 2 345999975 7899999999999998 64211 111111112234567899999 889999
Q ss_pred -cccHHHHHHHHHHHHHHc
Q 020266 306 -FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 306 -~~~~~~~l~~~~~~~~~~ 323 (328)
.++++++|+++++||+++
T Consensus 332 p~~~~~e~l~~~~~~~~~~ 350 (352)
T 1sb8_A 332 PKYDVSAGVALAMPWYIMF 350 (352)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 689999999999999864
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-46 Score=335.53 Aligned_cols=305 Identities=17% Similarity=0.239 Sum_probs=233.2
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC-CcCchHHhhCC
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL-EEGSFDSIVDG 81 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~ 81 (328)
|..|+||+|||||||||||++|+++|+++ |++|++++|+..+...+.. .++++++.+|++ |++.+.+++++
T Consensus 19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-------~~~v~~~~~Dl~~d~~~~~~~~~~ 91 (372)
T 3slg_A 19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK-------HERMHFFEGDITINKEWVEYHVKK 91 (372)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG-------STTEEEEECCTTTCHHHHHHHHHH
T ss_pred CcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc-------CCCeEEEeCccCCCHHHHHHHhcc
Confidence 45567899999999999999999999998 9999999998766544221 257999999999 99999999999
Q ss_pred ccEEEEccCCCCCCC-CCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020266 82 CDGVCHTASPFYHDA-KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (328)
Q Consensus 82 ~d~vih~a~~~~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 160 (328)
+|+|||+|+...... .......+++|+.++.+++++|++. + ++|||+||.+ +|+.. ...+++|++++.+..+
T Consensus 92 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~-~~~v~~SS~~-vyg~~----~~~~~~e~~~~~~~~p 164 (372)
T 3slg_A 92 CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSE-VYGMC----ADEQFDPDASALTYGP 164 (372)
T ss_dssp CSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH-T-CEEEEECCGG-GGBSC----CCSSBCTTTCCEEECC
T ss_pred CCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-C-CcEEEeCcHH-HhCCC----CCCCCCccccccccCC
Confidence 999999999754311 1223477899999999999999998 6 8999999965 55432 3456777765422111
Q ss_pred -ccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC-------CcchHHHHHHHHhCCC--CC--CCCCc
Q 020266 161 -KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT-------LNTSAAAVLSLIKGAQ--TY--PNVTF 228 (328)
Q Consensus 161 -~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~--~~--~~~~~ 228 (328)
..+.+.|+.+|.++|.+++.++.+ +++++++||+++|||+.... ...+..++..+..+.+ .. +++.+
T Consensus 165 ~~~p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 243 (372)
T 3slg_A 165 INKPRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKR 243 (372)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEE
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEE
Confidence 123467999999999999999888 99999999999999986532 2245667777888774 22 47889
Q ss_pred cceeHHHHHHHHHHhhcCCC---CCCcEEEec--CccCHHHHHHHHHHhCCCCCCCC----CC-----------CCCCCC
Q 020266 229 GWVNVKDVANAHIQAFEVPS---ANGRYCLVE--RVSHYSEIVNIIRELYPAFQLPE----KC-----------ADDKPH 288 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~---~~g~~~~~~--~~~~~~el~~~i~~~~~~~~~~~----~~-----------~~~~~~ 288 (328)
+|+|++|+|++++.+++++. .+++||+++ +.+|+.|+++.+.+.+|...... .. ......
T Consensus 244 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (372)
T 3slg_A 244 AFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQD 323 (372)
T ss_dssp ECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC------------
T ss_pred EEEEHHHHHHHHHHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccCCccc
Confidence 99999999999999999864 345999987 48999999999999886421100 00 000112
Q ss_pred CCceecchHHH-HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 289 VPTYQVLKEKV-KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 289 ~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
.....+|++|+ +.|||+ .++++++|+++++||+++
T Consensus 324 ~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 360 (372)
T 3slg_A 324 VQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGH 360 (372)
T ss_dssp -CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTC
T ss_pred cceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 34567899999 889999 779999999999999764
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=319.68 Aligned_cols=300 Identities=18% Similarity=0.211 Sum_probs=228.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++|+|||||||||||++++++|+++|++|++++|+..+...+. ..+++++.+|++|++++.++++++|+|||
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~--------~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 83 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA--------YLEPECRVAEMLDHAGLERALRGLDGVIF 83 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGG--------GGCCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhc--------cCCeEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 3568999999999999999999999999999999876654321 13688999999999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
+|+..... .......+++|+.++.+++++|.+. ++++|||+||.+++. .... ...+ +|+++..|... ..+.|
T Consensus 84 ~a~~~~~~-~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~-~~~~--~~~~-~E~~~~~p~~~--~~~~Y 155 (342)
T 2x4g_A 84 SAGYYPSR-PRRWQEEVASALGQTNPFYAACLQA-RVPRILYVGSAYAMP-RHPQ--GLPG-HEGLFYDSLPS--GKSSY 155 (342)
T ss_dssp C-------------CHHHHHHHHHHHHHHHHHHH-TCSCEEEECCGGGSC-CCTT--SSCB-CTTCCCSSCCT--TSCHH
T ss_pred CCccCcCC-CCCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCHHhhC-cCCC--CCCC-CCCCCCCcccc--ccChH
Confidence 99975432 2334578899999999999999997 788999999976543 2211 1134 88877665210 13679
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCC-CCCCcchHHHHHHHHhCCCC-CCCCCccceeHHHHHHHHHHhhc
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL-QPTLNTSAAAVLSLIKGAQT-YPNVTFGWVNVKDVANAHIQAFE 245 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~D~a~~~~~~~~ 245 (328)
+.+|.++|.+++.++.. +++++++||+.+|||.. .+ . +..++..+..+.+. .+++.++|+|++|+|++++.++.
T Consensus 156 ~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~ 231 (342)
T 2x4g_A 156 VLCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGP--T-TGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALE 231 (342)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSC--S-TTHHHHHHHTTCCCEEECCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCccc--c-HHHHHHHHHcCCCccccCCCcceeeHHHHHHHHHHHHh
Confidence 99999999999999877 99999999999999976 32 1 34566666666532 26788899999999999999998
Q ss_pred CCCCCCcEEEecCccCHHHHHHHHHHhCCCCC---CCCCC---------------C-------C-CCCCCCceecchHHH
Q 020266 246 VPSANGRYCLVERVSHYSEIVNIIRELYPAFQ---LPEKC---------------A-------D-DKPHVPTYQVLKEKV 299 (328)
Q Consensus 246 ~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~---~~~~~---------------~-------~-~~~~~~~~~~~~~k~ 299 (328)
++..+++||++++.+|+.|+++.+.+.+|... +|.+. . . .........+|++|+
T Consensus 232 ~~~~g~~~~v~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 311 (342)
T 2x4g_A 232 RGRIGERYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKA 311 (342)
T ss_dssp HSCTTCEEEECCEEEEHHHHHHHHHHHHTCCCCEEECHHHHHHHHHHHHC----------------CCTTCCCCBCCHHH
T ss_pred CCCCCceEEEcCCcccHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHhcCcccChHHH
Confidence 76555599998733999999999999987431 12110 0 0 011124567899999
Q ss_pred -HhcCC-ccccHHHHHHHHHHHHHHcCCCC
Q 020266 300 -KNLGI-EFIPVEVSLKETIESLKEKGFVD 327 (328)
Q Consensus 300 -~~lg~-~~~~~~~~l~~~~~~~~~~~~~~ 327 (328)
+.||| ++++++++|+++++||++++.++
T Consensus 312 ~~~lG~~~p~~~~~~l~~~~~~~~~~g~~~ 341 (342)
T 2x4g_A 312 REELGFFSTTALDDTLLRAIDWFRDNGYFN 341 (342)
T ss_dssp HHHHCCCCCSCHHHHHHHHHHHHHHTTCCC
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 77999 88899999999999999998764
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=325.68 Aligned_cols=300 Identities=20% Similarity=0.208 Sum_probs=227.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
.++||+|||||||||||++|+++|+++| ++|++++|+...... .+ . ...+++++.+|++|++++.++++++|+
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~l-~---~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 102 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI--NV-P---DHPAVRFSETSITDDALLASLQDEYDY 102 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG--GS-C---CCTTEEEECSCTTCHHHHHHCCSCCSE
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh--hc-c---CCCceEEEECCCCCHHHHHHHhhCCCE
Confidence 4568899999999999999999999999 999999997654321 01 0 135799999999999999999999999
Q ss_pred EEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCcccc--CCC---CC-Cc
Q 020266 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD--ETW---FS-DP 157 (328)
Q Consensus 85 vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~--E~~---~~-~~ 157 (328)
|||+|+..... ........+++|+.++.+|+++|++..++++|||+||.+ +|+.. ...+++ |++ +. .|
T Consensus 103 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~-vyg~~----~~~~~~~~E~~~~~~~~~~ 177 (377)
T 2q1s_A 103 VFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGC-SIAEK----TFDDAKATEETDIVSLHNN 177 (377)
T ss_dssp EEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC-------------------CCCCCCCSSCC
T ss_pred EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHH-HcCCC----CCCCcCcccccccccccCC
Confidence 99999975321 112234788999999999999998853578999999975 55432 234566 776 33 33
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCC---------CCC---CcchHHHHHHHHhCCC--CC
Q 020266 158 EVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLL---------QPT---LNTSAAAVLSLIKGAQ--TY 223 (328)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~---------~~~---~~~~~~~~~~~~~~~~--~~ 223 (328)
.+.|+.+|.++|.+++.++.+++++++++||+.+|||.. .+. ...+..++..+..+.+ .+
T Consensus 178 ------~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 251 (377)
T 2q1s_A 178 ------DSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLE 251 (377)
T ss_dssp ------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCS
T ss_pred ------CCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEe
Confidence 367999999999999999888899999999999999976 210 2335566677777764 23
Q ss_pred --CCCCccceeHHHHHHH-HHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCC-ceecchHH
Q 020266 224 --PNVTFGWVNVKDVANA-HIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVP-TYQVLKEK 298 (328)
Q Consensus 224 --~~~~~~~v~v~D~a~~-~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k 298 (328)
+++.++|+|++|+|++ ++.++.++. .|+||+++ +.+|+.|+++.+.+.+|........+....... .+.+|++|
T Consensus 252 g~g~~~~~~i~v~Dva~a~i~~~~~~~~-~g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d~~k 330 (377)
T 2q1s_A 252 NGGVATRDFIFVEDVANGLIACAADGTP-GGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEK 330 (377)
T ss_dssp GGGCCEECCEEHHHHHHHHHHHHHHCCT-TEEEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCCCHH
T ss_pred CCCCeEEeeEEHHHHHHHHHHHHHhcCC-CCeEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccCHHH
Confidence 3678999999999999 999998765 45999986 789999999999999875311111111111223 57789999
Q ss_pred H-HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 299 V-KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 299 ~-~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
+ +.|||+ .++++++|+++++|++++
T Consensus 331 ~~~~lG~~p~~~l~e~l~~~~~~~~~~ 357 (377)
T 2q1s_A 331 ARRELGFSADVSIDDGLRKTIEWTKAN 357 (377)
T ss_dssp HHHHHCCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHh
Confidence 9 889999 679999999999999764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=325.67 Aligned_cols=309 Identities=16% Similarity=0.080 Sum_probs=235.0
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|.....+++|+|||||||||||++|+++|+++|++|++++|+..+...+..... ...++.++.+|++|++++.++++
T Consensus 1 mi~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~ 77 (357)
T 1rkx_A 1 MINNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR---VADGMQSEIGDIRDQNKLLESIR 77 (357)
T ss_dssp -CCHHHHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT---TTTTSEEEECCTTCHHHHHHHHH
T ss_pred CCCchhhCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc---cCCceEEEEccccCHHHHHHHHH
Confidence 444455678899999999999999999999999999999998766544332221 13478999999999999999888
Q ss_pred C--ccEEEEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020266 81 G--CDGVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (328)
Q Consensus 81 ~--~d~vih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 157 (328)
+ +|+|||+||.... .....+...+++|+.++.+++++|.+.+.+++|||+||.+ +||.. ....+++|+++..+
T Consensus 78 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~-vyg~~---~~~~~~~E~~~~~~ 153 (357)
T 1rkx_A 78 EFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDK-CYDNK---EWIWGYRENEAMGG 153 (357)
T ss_dssp HHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGG-GBCCC---CSSSCBCTTSCBCC
T ss_pred hcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHH-HhCCC---CcCCCCCCCCCCCC
Confidence 5 8999999996321 1122334788999999999999999873378999999976 45432 11245677766544
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHHhc---------CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC--C-CC
Q 020266 158 EVCKQSELWYPLSKTLAEDAAWKFAKEK---------SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT--Y-PN 225 (328)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---------~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~--~-~~ 225 (328)
.+.|+.+|.++|.+++.++.++ +++++++||+.+|||+.......+..++..+..+.+. . ++
T Consensus 154 ------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 227 (357)
T 1rkx_A 154 ------YDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPH 227 (357)
T ss_dssp ------SSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTT
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEECCCC
Confidence 3679999999999999998765 8999999999999998643334456667777777642 2 46
Q ss_pred CCccceeHHHHHHHHHHhhcC----C-CCCCcEEEec---CccCHHHHHHHHHHhCCCCCCCCCCCC--CCCCCCceecc
Q 020266 226 VTFGWVNVKDVANAHIQAFEV----P-SANGRYCLVE---RVSHYSEIVNIIRELYPAFQLPEKCAD--DKPHVPTYQVL 295 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~----~-~~~g~~~~~~---~~~~~~el~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~ 295 (328)
+.++|+|++|+|++++.++.+ + ..+++||+++ +.+|+.|+++.+.+.+|... +..... .......+.+|
T Consensus 228 ~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~~d 306 (357)
T 1rkx_A 228 AIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGA-SWQLDGNAHPHEAHYLKLD 306 (357)
T ss_dssp CEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTC-CEEC-------CCCCCCBC
T ss_pred CeeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCC-ccccCCCCCCcCcccccCC
Confidence 778999999999999998874 2 3456999984 57999999999999987421 111111 11223456799
Q ss_pred hHHH-HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 296 KEKV-KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 296 ~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
++|+ +.|||+ .++++++|+++++||+++
T Consensus 307 ~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 336 (357)
T 1rkx_A 307 CSKAKMQLGWHPRWNLNTTLEYIVGWHKNW 336 (357)
T ss_dssp CHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCCcHHHHHHHHHHHHHHH
Confidence 9999 789999 679999999999999764
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=320.87 Aligned_cols=301 Identities=16% Similarity=0.117 Sum_probs=232.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
+||+|||||||||||++|+++|+++|++|++++|+........ ..+++++.+|++|++++.++++++|+|||
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih 99 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED--------MFCDEFHLVDLRVMENCLKVTEGVDHVFN 99 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG--------GTCSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhc--------cCCceEEECCCCCHHHHHHHhCCCCEEEE
Confidence 5789999999999999999999999999999999866533211 23688999999999999999999999999
Q ss_pred ccCCCCCC--CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 88 TASPFYHD--AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 88 ~a~~~~~~--~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
+|+..... ....+...+++|+.++.+++++|++. ++++|||+||.++++..........+++|+++... .+.+
T Consensus 100 ~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~----~~~~ 174 (379)
T 2c5a_A 100 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQLETTNVSLKESDAWPA----EPQD 174 (379)
T ss_dssp CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSB----CCSS
T ss_pred CceecCcccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeehheeCCCCCCCccCCCcCcccCCCC----CCCC
Confidence 99975421 12345588999999999999999987 78899999997644321111112245677652111 1346
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCCC---CC--CCCCccceeHHHHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQ---TY--PNVTFGWVNVKDVA 237 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~---~~--~~~~~~~v~v~D~a 237 (328)
.|+.+|.++|.+++.++.+++++++++||+.+|||...... ..+..++.++..+.+ .+ +++.++|+|++|+|
T Consensus 175 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva 254 (379)
T 2c5a_A 175 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECV 254 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHH
Confidence 79999999999999998888999999999999999765322 235566777767764 22 45788999999999
Q ss_pred HHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHHHH
Q 020266 238 NAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLK 314 (328)
Q Consensus 238 ~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~ 314 (328)
++++.+++++ .+++||+++ +.+|+.|+++.+.+.+|.. .+....+.........+|++|+ +.|||+ .++++++|+
T Consensus 255 ~ai~~~l~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~p~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~ 332 (379)
T 2c5a_A 255 EGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEKK-LPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLR 332 (379)
T ss_dssp HHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTCC-CCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHHHH
T ss_pred HHHHHHhhcc-CCCeEEeCCCCccCHHHHHHHHHHHhCCC-CceeeCCCCCCcccccCCHHHHHHHhCCCCCCCHHHHHH
Confidence 9999999876 466999986 8899999999999998843 1111111111233567899999 889999 679999999
Q ss_pred HHHHHHHHc
Q 020266 315 ETIESLKEK 323 (328)
Q Consensus 315 ~~~~~~~~~ 323 (328)
++++||+++
T Consensus 333 ~~~~~~~~~ 341 (379)
T 2c5a_A 333 ITYFWIKEQ 341 (379)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999764
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-44 Score=317.62 Aligned_cols=299 Identities=19% Similarity=0.207 Sum_probs=229.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCC--ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+|+|||||||||||++++++|+++| ++|++++|... ....+... ....+++++.+|++|++.+.+++.++|+
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 78 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDL----EDDPRYTFVKGDVADYELVKELVRKVDG 78 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTT----TTCTTEEEEECCTTCHHHHHHHHHTCSE
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhh----ccCCceEEEEcCCCCHHHHHHHhhCCCE
Confidence 4679999999999999999999986 89999999652 22222111 1135789999999999999999999999
Q ss_pred EEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 85 vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
|||+||..... ....+...+++|+.++.+++++|.+.+..++|||+||.+ +||.. ...+++|+++..+.
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~-vyg~~----~~~~~~E~~~~~~~----- 148 (336)
T 2hun_A 79 VVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDE-VYGDI----LKGSFTENDRLMPS----- 148 (336)
T ss_dssp EEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGG-GGCCC----SSSCBCTTBCCCCC-----
T ss_pred EEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHH-HHCCC----CCCCcCCCCCCCCC-----
Confidence 99999975321 112334788999999999999999872237999999976 45432 23577888766543
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CCCCccceeHHHHHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANA 239 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~~ 239 (328)
+.|+.+|.++|.+++.++.+++++++++||+.+|||...+ ...+..++.++..+.+ .+ +++.++|+|++|+|++
T Consensus 149 -~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~ 226 (336)
T 2hun_A 149 -SPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFP-EKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRA 226 (336)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCT-TSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCc-CchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHH
Confidence 6799999999999999998899999999999999998643 2334556666777663 22 4577899999999999
Q ss_pred HHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC-CCCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHHHHH
Q 020266 240 HIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ-LPEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKE 315 (328)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~ 315 (328)
++.+++++..+++||+++ ..+|+.|+++.+.+.+|... ..............+.+|++|+ +.|||+ .++++++|++
T Consensus 227 ~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~ 306 (336)
T 2hun_A 227 IELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYTFDEGIKK 306 (336)
T ss_dssp HHHHHHHCCTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSSCHHHHHHH
T ss_pred HHHHHhCCCCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCCCCCHHHHHHH
Confidence 999998654455999986 67999999999999998532 1111111122223567899999 779999 7899999999
Q ss_pred HHHHHHHc
Q 020266 316 TIESLKEK 323 (328)
Q Consensus 316 ~~~~~~~~ 323 (328)
+++||+++
T Consensus 307 ~~~~~~~~ 314 (336)
T 2hun_A 307 TIDWYLKN 314 (336)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99999765
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-44 Score=316.53 Aligned_cols=293 Identities=16% Similarity=0.192 Sum_probs=227.9
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--ccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~v 85 (328)
++|+|||||||||||++++++|+++|++|++++|+... .. + ++.++.+|++|++++.+++++ +|+|
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~---l--------~~~~~~~Dl~d~~~~~~~~~~~~~d~v 78 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL---P--------NVEMISLDIMDSQRVKKVISDIKPDYI 78 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC---T--------TEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc---c--------eeeEEECCCCCHHHHHHHHHhcCCCEE
Confidence 57899999999999999999999999999999998654 21 0 588999999999999999885 9999
Q ss_pred EEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 86 CHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 86 ih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
||+||.... ...+.+...+++|+.++.+++++|.+..++++|||+||.++ |+... ....+++|+++..| .
T Consensus 79 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v-~g~~~--~~~~~~~E~~~~~~------~ 149 (321)
T 2pk3_A 79 FHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEE-YGMIL--PEESPVSEENQLRP------M 149 (321)
T ss_dssp EECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGG-TBSCC--GGGCSBCTTSCCBC------C
T ss_pred EEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHh-cCCCC--CCCCCCCCCCCCCC------C
Confidence 999997542 11233458899999999999999976435789999999864 43210 13457788876654 3
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHh---C--CC--CC--CCCCccceeHHH
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK---G--AQ--TY--PNVTFGWVNVKD 235 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~---~--~~--~~--~~~~~~~v~v~D 235 (328)
+.|+.+|.++|.+++.++.+++++++++||+++|||+.... ..+..++..+.. | .+ .+ +++.++|+|++|
T Consensus 150 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~D 228 (321)
T 2pk3_A 150 SPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG-FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRD 228 (321)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT-SHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHH
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC-chHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHH
Confidence 67999999999999999988899999999999999986542 234445555555 5 32 22 356789999999
Q ss_pred HHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCC-CCC--CCCCCCCceecchHHH-HhcCCc-cccH
Q 020266 236 VANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPE-KCA--DDKPHVPTYQVLKEKV-KNLGIE-FIPV 309 (328)
Q Consensus 236 ~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~k~-~~lg~~-~~~~ 309 (328)
+|++++.++.++..+++||+++ ..+|+.|+++.+.+.+|.. .+. ..+ ........+.+|++|+ +.|||+ .+++
T Consensus 229 va~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~ 307 (321)
T 2pk3_A 229 IVQAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVK-IDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPL 307 (321)
T ss_dssp HHHHHHHHHHHCCTTCEEEESCSCEEEHHHHHHHHHHHSSSC-CEEEECGGGCCSSCCSBCCBCCHHHHHHHCCCCCSCH
T ss_pred HHHHHHHHHhCCCCCCeEEeCCCCCeeHHHHHHHHHHHhCCC-CceeeccccCCCcccchhccCHHHHHHHcCCCcCCCH
Confidence 9999999998764456999986 7899999999999999853 111 111 1112234578899999 779999 6699
Q ss_pred HHHHHHHHHHHHHc
Q 020266 310 EVSLKETIESLKEK 323 (328)
Q Consensus 310 ~~~l~~~~~~~~~~ 323 (328)
+++|+++++||+++
T Consensus 308 ~e~l~~~~~~~~~~ 321 (321)
T 2pk3_A 308 EKSLFEILQSYRQA 321 (321)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999753
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=314.96 Aligned_cols=295 Identities=16% Similarity=0.227 Sum_probs=227.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 86 (328)
||+|||||||||||++++++|+++|++|++++|+...... .+ ..+++++.+|++|++.+.++++ ++|+||
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~d~vi 72 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED---AI-----TEGAKFYNGDLRDKAFLRDVFTQENIEAVM 72 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG---GS-----CTTSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh---hc-----CCCcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence 4689999999999999999999999999999997544221 10 1268899999999999999998 899999
Q ss_pred EccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
|+|+..... ....+...+++|+.++.+++++|++. ++++|||+||.+ +|+.. ...+++|+++..|. +
T Consensus 73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~~-~~~~~----~~~~~~E~~~~~~~------~ 140 (330)
T 2c20_A 73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEF-KVDKFIFSSTAA-TYGEV----DVDLITEETMTNPT------N 140 (330)
T ss_dssp ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGG-GGCSC----SSSSBCTTSCCCCS------S
T ss_pred ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHc-CCCEEEEeCCce-eeCCC----CCCCCCcCCCCCCC------C
Confidence 999975321 11233478899999999999999997 788999999975 55432 34578888876553 6
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC-------CcchHHHHHHHHhCC-C---C--------CCCC
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT-------LNTSAAAVLSLIKGA-Q---T--------YPNV 226 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~-~---~--------~~~~ 226 (328)
.|+.+|.++|.+++.++.+++++++++||+++|||+.... ...+...+.+...+. + + -+++
T Consensus 141 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 220 (330)
T 2c20_A 141 TYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTC 220 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSC
T ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCce
Confidence 7999999999999999988899999999999999963211 122334444444432 2 1 2356
Q ss_pred CccceeHHHHHHHHHHhhcCCC---CCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCceecchHHH-H
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS---ANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC-ADDKPHVPTYQVLKEKV-K 300 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~---~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~-~ 300 (328)
.++|+|++|+|++++.+++++. .+++||+++ +.+|+.|+++.+.+.+|.. .+... +..........+|++|+ +
T Consensus 221 ~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~ 299 (330)
T 2c20_A 221 IRDYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHE-IPAEVAPRRAGDPARLVASSQKAKE 299 (330)
T ss_dssp EECEEEHHHHHHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSC-CCEEEECCCSSCCSEECBCCHHHHH
T ss_pred eEeeEeHHHHHHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCC-CceeeCCCCCCcccccccCHHHHHH
Confidence 7899999999999999997642 245999975 7899999999999998843 22211 11112234678899999 8
Q ss_pred hcCCc-cc-cHHHHHHHHHHHHHHcC
Q 020266 301 NLGIE-FI-PVEVSLKETIESLKEKG 324 (328)
Q Consensus 301 ~lg~~-~~-~~~~~l~~~~~~~~~~~ 324 (328)
.|||+ .+ +++++|+++++|++++.
T Consensus 300 ~lG~~p~~~~l~~~l~~~~~~~~~~~ 325 (330)
T 2c20_A 300 KLGWDPRYVNVKTIIEHAWNWHQKQP 325 (330)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHCS
T ss_pred HhCCCCccCCHHHHHHHHHHHHHHhh
Confidence 89999 55 99999999999998864
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=315.65 Aligned_cols=301 Identities=16% Similarity=0.208 Sum_probs=231.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC--CCeEEEEecCCCC--hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
||+|||||||||||++++++|+++ |++|++++|+... ...+... ...+++++.+|++|++++.++++++|+
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 78 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-----LGDRVELVVGDIADAELVDKLAAKADA 78 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-----CSSSEEEEECCTTCHHHHHHHHTTCSE
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhh-----ccCCeEEEECCCCCHHHHHHHhhcCCE
Confidence 578999999999999999999998 8999999996532 2221111 125789999999999999999999999
Q ss_pred EEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCC-------CCCCCccccCCCCCC
Q 020266 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGK-------PRTPDVVVDETWFSD 156 (328)
Q Consensus 85 vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~-------~~~~~~~~~E~~~~~ 156 (328)
|||+|+..... ....+...+++|+.++.+++++|.+. ++ +|||+||.++++.... ......+++|+++..
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~ 156 (348)
T 1oc2_A 79 IVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-DI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN 156 (348)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCC
T ss_pred EEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHh-CC-eEEEecccceeCCCcccccccccccccCCCcCCCCCCC
Confidence 99999975321 11223478899999999999999997 66 9999999764432110 001125678877655
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC--C--CCCCcccee
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT--Y--PNVTFGWVN 232 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~v~ 232 (328)
+ .+.|+.+|.++|.+++.++.+++++++++||+.+|||.... ...+..++.++..+.+. + +++.++|+|
T Consensus 157 ~------~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 229 (348)
T 1oc2_A 157 P------SSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI-EKFIPRQITNILAGIKPKLYGEGKNVRDWIH 229 (348)
T ss_dssp C------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCT-TSHHHHHHHHHHHTCCCEEETTSCCEEECEE
T ss_pred C------CCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCc-cchHHHHHHHHHcCCCceEecCCCceEeeEE
Confidence 4 36799999999999999998889999999999999998643 23455566777777642 2 457789999
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCC-CCCCCCCCCCCCceecchHHH-HhcCCc-ccc
Q 020266 233 VKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQL-PEKCADDKPHVPTYQVLKEKV-KNLGIE-FIP 308 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~ 308 (328)
++|+|++++.++.++..+++||+++ ..+|+.|+++.+.+.+|.... .............+.+|++|+ +.|||+ .++
T Consensus 230 v~Dva~~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~ 309 (348)
T 1oc2_A 230 TNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFT 309 (348)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCC
T ss_pred HHHHHHHHHHHhhCCCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccCHHHHHHHcCCCCCCC
Confidence 9999999999998654445999986 789999999999999985321 111111122234567899999 789999 667
Q ss_pred -HHHHHHHHHHHHHHc
Q 020266 309 -VEVSLKETIESLKEK 323 (328)
Q Consensus 309 -~~~~l~~~~~~~~~~ 323 (328)
++++|+++++|++++
T Consensus 310 ~~~~~l~~~~~~~~~~ 325 (348)
T 1oc2_A 310 DFSEGLEETIQWYTDN 325 (348)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHh
Confidence 999999999999865
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-44 Score=314.55 Aligned_cols=294 Identities=20% Similarity=0.272 Sum_probs=226.6
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 87 (328)
|+|||||||||||++++++|+++|++|++++|....... .. ..+++++.+|++|++++.++++ ++|+|||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~ 72 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE--NV------PKGVPFFRVDLRDKEGVERAFREFRPTHVSH 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG--GS------CTTCCEECCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh--hc------ccCeEEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999999999999985432211 00 1357789999999999999888 8999999
Q ss_pred ccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
+|+..... ....+...+++|+.++.+++++|++. ++++||++||.+.+|+.. ....+++|+++..|. +.
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~~g~~---~~~~~~~E~~~~~~~------~~ 142 (311)
T 2p5y_A 73 QAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-GVEKLVFASTGGAIYGEV---PEGERAEETWPPRPK------SP 142 (311)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEHHHHHCCC---CTTCCBCTTSCCCCC------SH
T ss_pred CccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCChhhcCCC---CCCCCcCCCCCCCCC------Ch
Confidence 99874321 11223478899999999999999987 788999999974566431 123467788765543 67
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCCC--CC-------CCCCccceeHHH
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQ--TY-------PNVTFGWVNVKD 235 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~--~~-------~~~~~~~v~v~D 235 (328)
|+.+|.++|.+++.++.+++++++++||+++|||+..... ..+..++.++..+.+ .+ +.+.++|+|++|
T Consensus 143 Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D 222 (311)
T 2p5y_A 143 YAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGD 222 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHH
Confidence 9999999999999998888999999999999999865432 234455666666663 22 356789999999
Q ss_pred HHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCc-cccHHHHH
Q 020266 236 VANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE-FIPVEVSL 313 (328)
Q Consensus 236 ~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~-~~~~~~~l 313 (328)
+|++++.++.++ +++||+++ +.+|++|+++.+.+.+|........+..........+|++|+++|||+ .++++++|
T Consensus 223 va~a~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~~l 300 (311)
T 2p5y_A 223 VAEAHALALFSL--EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLMAHGWRPKVGFQEGI 300 (311)
T ss_dssp HHHHHHHHHHHC--CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCTTCCSBCCBCCHHHHTTTCCCSSCHHHHH
T ss_pred HHHHHHHHHhCC--CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCccchhhccCCHHHHHHCCCCCCCCHHHHH
Confidence 999999999864 56999985 789999999999999874311111111112234677899999339999 78999999
Q ss_pred HHHHHHHHHc
Q 020266 314 KETIESLKEK 323 (328)
Q Consensus 314 ~~~~~~~~~~ 323 (328)
+++++|++++
T Consensus 301 ~~~~~~~~~~ 310 (311)
T 2p5y_A 301 RLTVDHFRGA 310 (311)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999764
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=317.76 Aligned_cols=289 Identities=16% Similarity=0.176 Sum_probs=223.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC----hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND----PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
+++|+|||||||||||++|+++|+++|++|++++|+... ...+... ....+++++.+|++ ++
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~----------~~ 70 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKF----LEKPVLELEERDLS----------DV 70 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEE----ECSCGGGCCHHHHT----------TE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhh----ccCCCeeEEeCccc----------cC
Confidence 447899999999999999999999999999999997652 2211111 11234566666665 68
Q ss_pred cEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 83 DGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 83 d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
|+|||+|+..... ........++ |+.++.+++++|++. ++++|||+||.+ +|+.. ...+++|+++..|.
T Consensus 71 d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~-~v~~~v~~SS~~-v~~~~----~~~~~~E~~~~~p~--- 140 (321)
T 3vps_A 71 RLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSV-GVPKVVVGSTCE-VYGQA----DTLPTPEDSPLSPR--- 140 (321)
T ss_dssp EEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHH-TCCEEEEEEEGG-GGCSC----SSSSBCTTSCCCCC---
T ss_pred CEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHc-CCCeEEEecCHH-HhCCC----CCCCCCCCCCCCCC---
Confidence 9999999975421 1122235667 999999999999998 788999999976 45422 34578888877654
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcCc-cEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CCCCccceeHHHH
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKSI-DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDV 236 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~ 236 (328)
+.|+.+|.++|.+++.++.++++ +++++||+.+|||+... ...+..++..+..+.+ .+ +++.++|+|++|+
T Consensus 141 ---~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 216 (321)
T 3vps_A 141 ---SPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERP-DALVPRLCANLLTRNELPVEGDGEQRRDFTYITDV 216 (321)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCT-TSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHH
T ss_pred ---ChhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCC-CChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHH
Confidence 67999999999999999998999 99999999999998654 2345566777777763 22 4678999999999
Q ss_pred HHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-HhcCCcc--ccHHHH
Q 020266 237 ANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNLGIEF--IPVEVS 312 (328)
Q Consensus 237 a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~--~~~~~~ 312 (328)
|++++.++.++.. |+||+++ +.+|+.|+++.+. .+|........+........+.+|++|+ +.|||++ ++++++
T Consensus 217 a~~~~~~~~~~~~-g~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~ 294 (321)
T 3vps_A 217 VDKLVALANRPLP-SVVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEG 294 (321)
T ss_dssp HHHHHHGGGSCCC-SEEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCSCCCCHHHH
T ss_pred HHHHHHHHhcCCC-CeEEecCCCcccHHHHHHHHH-HhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCCCcCCHHHH
Confidence 9999999998766 5999985 7899999999999 8875321111222233445678999999 7799997 999999
Q ss_pred HHHHHHHHHHcCC
Q 020266 313 LKETIESLKEKGF 325 (328)
Q Consensus 313 l~~~~~~~~~~~~ 325 (328)
|+++++||++++.
T Consensus 295 l~~~~~~~~~~~~ 307 (321)
T 3vps_A 295 IRLTLEWWQSRDL 307 (321)
T ss_dssp HHHHHHHHHTSCT
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998765
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=318.21 Aligned_cols=292 Identities=18% Similarity=0.177 Sum_probs=225.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC--CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 84 (328)
+|+|||||||||||++|+++|+++ |++|++++|+..+... . .+++++.+|++|++++.++++ ++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-~---------~~~~~~~~D~~d~~~~~~~~~~~~~d~ 71 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDV-V---------NSGPFEVVNALDFNQIEHLVEVHKITD 71 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHH-H---------HSSCEEECCTTCHHHHHHHHHHTTCCE
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccc-c---------CCCceEEecCCCHHHHHHHHhhcCCCE
Confidence 468999999999999999999998 8999999997665321 0 246789999999999999998 8999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
|||+|+.............+++|+.++.+++++|++. ++++|||+||.++ |+.. ....+.+|+.+..| .
T Consensus 72 vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~-~~~~---~~~~~~~e~~~~~~------~ 140 (312)
T 2yy7_A 72 IYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAK-KIKKIFWPSSIAV-FGPT---TPKENTPQYTIMEP------S 140 (312)
T ss_dssp EEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-SCSEEECCEEGGG-CCTT---SCSSSBCSSCBCCC------C
T ss_pred EEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHH-hCCC---CCCCCccccCcCCC------C
Confidence 9999997543212234578899999999999999997 7889999999764 4322 12346677766554 3
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCCC--CC--CCCCccceeHHHHH
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVA 237 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a 237 (328)
+.|+.+|.++|.+++.++.+++++++++||+.+|||...+.. ..+...+.+.+.+++ .+ +++.++|+|++|+|
T Consensus 141 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 220 (312)
T 2yy7_A 141 TVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAI 220 (312)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHH
Confidence 679999999999999998888999999999999998654322 224444455454442 22 56789999999999
Q ss_pred HHHHHhhcCCCC----CCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCC--CCCCceecchHHH-HhcCCc-cccH
Q 020266 238 NAHIQAFEVPSA----NGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDK--PHVPTYQVLKEKV-KNLGIE-FIPV 309 (328)
Q Consensus 238 ~~~~~~~~~~~~----~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~-~~lg~~-~~~~ 309 (328)
++++.+++++.. +++||++++.+|+.|+++.+.+.+|...++....... .......+|++|+ +.|||+ .+++
T Consensus 221 ~a~~~~~~~~~~~~~~~~~~ni~~~~~s~~e~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l 300 (312)
T 2yy7_A 221 DATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDL 300 (312)
T ss_dssp HHHHHHHHSCGGGCCCSSCEECCSEEECHHHHHHHHHTTCTTCEEEECCCTHHHHHTTSCSSBCCHHHHHHHCCCCCCCH
T ss_pred HHHHHHHhCcccccccCceEEeCCCccCHHHHHHHHHHHCCCCceEeccCccccccccccccCCHHHHHHHcCCCCCCCH
Confidence 999999987643 2699998888999999999999988432221111000 0112346899999 789999 6799
Q ss_pred HHHHHHHHHHHH
Q 020266 310 EVSLKETIESLK 321 (328)
Q Consensus 310 ~~~l~~~~~~~~ 321 (328)
+++|+++++||+
T Consensus 301 ~~~l~~~~~~~k 312 (312)
T 2yy7_A 301 ESMTKDMIEHLS 312 (312)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999984
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=313.03 Aligned_cols=297 Identities=21% Similarity=0.231 Sum_probs=231.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHC---C---CeEEEEecCCC--ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC
Q 020266 10 KVVCVTGASGYIASWLVKLLLSR---G---YTVKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG 81 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~---g---~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (328)
|+|||||||||||++++++|+++ | ++|++++|... ....+..+ ....+++++.+|++|++++.+++.+
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPV----DADPRLRFVHGDIRDAGLLARELRG 76 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGG----TTCTTEEEEECCTTCHHHHHHHTTT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhc----ccCCCeEEEEcCCCCHHHHHHHhcC
Confidence 47999999999999999999997 8 99999999653 22222211 1135789999999999999999999
Q ss_pred ccEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020266 82 CDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (328)
Q Consensus 82 ~d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 160 (328)
+|+|||+|+..... ....+...+++|+.++.+++++|.+. ++++|||+||.+ +||.. ...+++|+++..|.
T Consensus 77 ~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~-~~~~~v~~SS~~-vyg~~----~~~~~~E~~~~~~~-- 148 (337)
T 1r6d_A 77 VDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQ-VYGSI----DSGSWTESSPLEPN-- 148 (337)
T ss_dssp CCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGG-GGCCC----SSSCBCTTSCCCCC--
T ss_pred CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecchH-HhCCC----CCCCCCCCCCCCCC--
Confidence 99999999975321 11223478899999999999999998 788999999976 45422 23567888766553
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CCCCccceeHHHH
Q 020266 161 KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDV 236 (328)
Q Consensus 161 ~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~ 236 (328)
+.|+.+|.++|.+++.++.+++++++++||+.+|||.... ...+..++..+..+.+ .+ +++.++|+|++|+
T Consensus 149 ----~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 223 (337)
T 1r6d_A 149 ----SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP-EKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDH 223 (337)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT-TSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHH
T ss_pred ----CchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCC-CChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHH
Confidence 6799999999999999998889999999999999998643 2344556667777663 22 4567899999999
Q ss_pred HHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC-CCCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHH
Q 020266 237 ANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ-LPEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVS 312 (328)
Q Consensus 237 a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~ 312 (328)
|++++.++.++..+++||+++ ..+|+.|+++.+.+.+|... ..............+.+|++|+ +.|||+ .++++++
T Consensus 224 a~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~ 303 (337)
T 1r6d_A 224 CRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADG 303 (337)
T ss_dssp HHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHH
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcCCCCCCCHHHH
Confidence 999999998765455999986 68999999999999987531 1111111112223567899999 789999 7899999
Q ss_pred HHHHHHHHHHc
Q 020266 313 LKETIESLKEK 323 (328)
Q Consensus 313 l~~~~~~~~~~ 323 (328)
|+++++||+++
T Consensus 304 l~~~~~~~~~~ 314 (337)
T 1r6d_A 304 LARTVRWYREN 314 (337)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999999865
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-44 Score=315.17 Aligned_cols=290 Identities=15% Similarity=0.097 Sum_probs=222.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--cc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CD 83 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d 83 (328)
.|+||+|||||||||||++|+++|+++|+ +.... ...++++.+|++|++.+.+++++ +|
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~~-------------~~~~~~~~~D~~d~~~~~~~~~~~~~d 63 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGED-------------WVFVSSKDADLTDTAQTRALFEKVQPT 63 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTCE-------------EEECCTTTCCTTSHHHHHHHHHHSCCS
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC------ccccc-------------ccccCceecccCCHHHHHHHHhhcCCC
Confidence 35688999999999999999999999998 11110 12344567999999999999986 99
Q ss_pred EEEEccCCCCC--CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCC----CCCc
Q 020266 84 GVCHTASPFYH--DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW----FSDP 157 (328)
Q Consensus 84 ~vih~a~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~----~~~~ 157 (328)
+|||+|+.... .........+++|+.++.+|+++|++. ++++|||+||.+ +|+.. ...+++|++ ++.|
T Consensus 64 ~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~~~v~~SS~~-vyg~~----~~~~~~E~~~~~~~~~p 137 (319)
T 4b8w_A 64 HVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV-GARKVVSCLSTC-IFPDK----TTYPIDETMIHNGPPHN 137 (319)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGG-GSCSS----CCSSBCGGGGGBSCCCS
T ss_pred EEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEEcchh-hcCCC----CCCCccccccccCCCCC
Confidence 99999998541 122334578999999999999999998 788999999975 55432 345778876 3333
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC---CcchHHHHHH----HHhCCC--CC--CCC
Q 020266 158 EVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---LNTSAAAVLS----LIKGAQ--TY--PNV 226 (328)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~----~~~~~~--~~--~~~ 226 (328)
. ...|+.+|.++|.+++.++++++++++++||+++|||+.... ...+..++.+ +..+.+ .+ +++
T Consensus 138 ~-----~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 212 (319)
T 4b8w_A 138 S-----NFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNP 212 (319)
T ss_dssp S-----SHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCC
T ss_pred C-----cchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCe
Confidence 1 225999999999999999998999999999999999986532 1234445555 566664 22 467
Q ss_pred CccceeHHHHHHHHHHhhcCCCC--CCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-Hhc
Q 020266 227 TFGWVNVKDVANAHIQAFEVPSA--NGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNL 302 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~~--~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l 302 (328)
.++|+|++|+|++++.++.++.. +++||+++ +.+|+.|+++.+.+.+|........+..........+|++|+ +.|
T Consensus 213 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 292 (319)
T 4b8w_A 213 RRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYL 292 (319)
T ss_dssp EECEEEHHHHHHHHHHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTSCCCCSCCCBCCHHHHHHC
T ss_pred eEEEEeHHHHHHHHHHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCCCcCcccccCCHHHHHHhc
Confidence 88999999999999999987433 33899875 899999999999999985321111122222334567999999 779
Q ss_pred CCc-cccHHHHHHHHHHHHHHcCC
Q 020266 303 GIE-FIPVEVSLKETIESLKEKGF 325 (328)
Q Consensus 303 g~~-~~~~~~~l~~~~~~~~~~~~ 325 (328)
||. .++++++|+++++||+++..
T Consensus 293 g~~p~~~~~~~l~~~~~~~~~~~~ 316 (319)
T 4b8w_A 293 PDFRFTPFKQAVKETCAWFTDNYE 316 (319)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHh
Confidence 999 88999999999999988653
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=308.50 Aligned_cols=301 Identities=19% Similarity=0.237 Sum_probs=224.4
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh-hhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
..+++|+|||||||||||++|+++|+++|++|++++|...... .+... ....+++++.+|++++. +.++|
T Consensus 23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~-----~~~~d 93 (343)
T 2b69_A 23 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW----IGHENFELINHDVVEPL-----YIEVD 93 (343)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG----TTCTTEEEEECCTTSCC-----CCCCS
T ss_pred cccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhh----ccCCceEEEeCccCChh-----hcCCC
Confidence 4456889999999999999999999999999999999754322 11111 11357899999998864 56799
Q ss_pred EEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020266 84 GVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (328)
Q Consensus 84 ~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 162 (328)
+|||+|+..... ........+++|+.++.+++++|++. ++ +|||+||.+ +|+.. ...+++|+.+.... +..
T Consensus 94 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~-v~g~~----~~~~~~E~~~~~~~-~~~ 165 (343)
T 2b69_A 94 QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSE-VYGDP----EVHPQSEDYWGHVN-PIG 165 (343)
T ss_dssp EEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGG-GGBSC----SSSSBCTTCCCBCC-SSS
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CC-cEEEECcHH-HhCCC----CCCCCcccccccCC-CCC
Confidence 999999975421 12233477899999999999999987 55 899999975 45432 23466776432111 111
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC-CcchHHHHHHHHhCCCC--C--CCCCccceeHHHHH
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT-LNTSAAAVLSLIKGAQT--Y--PNVTFGWVNVKDVA 237 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~--~--~~~~~~~v~v~D~a 237 (328)
+.+.|+.+|.++|.+++.++.+++++++++||+.+|||+.... ...+..++.+...+.+. + +++.++|+|++|+|
T Consensus 166 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva 245 (343)
T 2b69_A 166 PRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 245 (343)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHH
Confidence 3467999999999999999888899999999999999976432 23455667777777742 3 45788999999999
Q ss_pred HHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHHHH
Q 020266 238 NAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLK 314 (328)
Q Consensus 238 ~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~ 314 (328)
++++.++..+ .+++||+++ +.+|+.|+++.+.+.+|........+..........+|++|+ +.|||+ .++++++|+
T Consensus 246 ~a~~~~~~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~ 324 (343)
T 2b69_A 246 NGLVALMNSN-VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLN 324 (343)
T ss_dssp HHHHHHHTSS-CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred HHHHHHHhcC-CCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCCCCCceecCCHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999865 366999986 789999999999999875321111111112234567899999 889999 689999999
Q ss_pred HHHHHHHHc
Q 020266 315 ETIESLKEK 323 (328)
Q Consensus 315 ~~~~~~~~~ 323 (328)
++++|++++
T Consensus 325 ~~~~~~~~~ 333 (343)
T 2b69_A 325 KAIHYFRKE 333 (343)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999764
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-43 Score=310.57 Aligned_cols=299 Identities=17% Similarity=0.135 Sum_probs=230.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh--hhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK--KTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CD 83 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d 83 (328)
.+|+|||||||||||++++++|+++|++|++++|+..... .+..+ ....+++++.+|++|++++.+++++ +|
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 88 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL----GIEGDIQYEDGDMADACSVQRAVIKAQPQ 88 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHT----TCGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhc----cccCceEEEECCCCCHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999765421 11111 1134789999999999999998884 69
Q ss_pred EEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCc-cEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 84 GVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSI-KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 84 ~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
+|||+|+..... ....+...+++|+.++.+++++|++. ++ ++|||+||.+ +|+.. ...+++|+++..|.
T Consensus 89 ~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS~~-v~g~~----~~~~~~E~~~~~p~--- 159 (335)
T 1rpn_A 89 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQASTSE-MFGLI----QAERQDENTPFYPR--- 159 (335)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEEGG-GGCSC----SSSSBCTTSCCCCC---
T ss_pred EEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeCHH-HhCCC----CCCCCCcccCCCCC---
Confidence 999999974421 12334578899999999999999987 64 8999999976 45422 23577888776653
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCCC-C--C--CCCCccceeHH
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQ-T--Y--PNVTFGWVNVK 234 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~-~--~--~~~~~~~v~v~ 234 (328)
+.|+.+|.++|.+++.++.+++++++++||+++|||+..... ..+..++.++..+.+ . + +++.++|+|++
T Consensus 160 ---~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~ 236 (335)
T 1rpn_A 160 ---SPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAG 236 (335)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHH
T ss_pred ---ChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHH
Confidence 679999999999999999888999999999999999764322 123445566666752 2 2 36789999999
Q ss_pred HHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC---CCCCCC-CCCCCCCceecchHHH-HhcCCc-cc
Q 020266 235 DVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ---LPEKCA-DDKPHVPTYQVLKEKV-KNLGIE-FI 307 (328)
Q Consensus 235 D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~k~-~~lg~~-~~ 307 (328)
|+|++++.+++++. .++||+++ +.+|+.|+++.+.+.+|... ++.... ........+.+|++|+ +.|||+ .+
T Consensus 237 Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 315 (335)
T 1rpn_A 237 DYVEAMWLMLQQDK-ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRT 315 (335)
T ss_dssp HHHHHHHHHHHSSS-CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHhcCC-CCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCCCcCC
Confidence 99999999998764 47999986 78999999999999998531 111100 1111223567899999 789999 67
Q ss_pred cHHHHHHHHHHHHHHc
Q 020266 308 PVEVSLKETIESLKEK 323 (328)
Q Consensus 308 ~~~~~l~~~~~~~~~~ 323 (328)
+++++|+++++|++++
T Consensus 316 ~l~e~l~~~~~~~~~~ 331 (335)
T 1rpn_A 316 SLDELIRMMVEADLRR 331 (335)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999999765
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=309.53 Aligned_cols=310 Identities=27% Similarity=0.424 Sum_probs=232.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEE-EccCCCcCchHHhhCCccE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF-KANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d~ 84 (328)
.+++|+|||||||||||++++++|+++|++|++++|+..+...+...+.... ..+++++ .+|++|++.+.++++++|+
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~ 86 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCCE
Confidence 4568899999999999999999999999999999997655443333221111 1468888 8999999999999999999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc------
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE------ 158 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~------ 158 (328)
|||+|+..... ..+...+++|+.++.+++++|.+..++++|||+||.+++++.. +.....+++|+++....
T Consensus 87 vih~A~~~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~-~~~~~~~~~E~~~~~~~~~~~~~ 163 (342)
T 1y1p_A 87 VAHIASVVSFS--NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPK-PNVEGIYLDEKSWNLESIDKAKT 163 (342)
T ss_dssp EEECCCCCSCC--SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCC-TTCCCCEECTTCCCHHHHHHHHH
T ss_pred EEEeCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCC-CCCCCcccCccccCchhhhhhcc
Confidence 99999975432 2345789999999999999998533678999999987654321 11123577887642100
Q ss_pred ----ccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCCCC--CC-CCC
Q 020266 159 ----VCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQT--YP-NVT 227 (328)
Q Consensus 159 ----~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~--~~-~~~ 227 (328)
.+..+.+.|+.+|.++|.+++.++.++ +++++++||+.+|||...... ..+..++.++..+.+. ++ .+.
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T 1y1p_A 164 LPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPP 243 (342)
T ss_dssp SCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCS
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccccCCc
Confidence 001123679999999999999998875 789999999999999765432 2456677777777642 22 267
Q ss_pred ccceeHHHHHHHHHHhhcCCCCCC-cEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-HhcCC-
Q 020266 228 FGWVNVKDVANAHIQAFEVPSANG-RYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNLGI- 304 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~- 304 (328)
++|+|++|+|++++.++.++...| .+.++++.+|+.|+++.+.+.+|...++..... .......+|++|+ +.|||
T Consensus 244 ~~~v~v~Dva~a~~~~~~~~~~~g~~~~~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~--~~~~~~~~d~~k~~~~lg~~ 321 (342)
T 1y1p_A 244 QYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPD--QGQDLSKFDTAPSLEILKSL 321 (342)
T ss_dssp EEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCC--CCCCCCEECCHHHHHHHHHT
T ss_pred CCEeEHHHHHHHHHHHHcCcccCCceEEEeCCCCCHHHHHHHHHHHCCCccCCCCCCc--cccccccCChHHHHHHHhhc
Confidence 899999999999999998765556 455556789999999999999986433322211 1122367899999 77887
Q ss_pred --c-cccHHHHHHHHHHHHH
Q 020266 305 --E-FIPVEVSLKETIESLK 321 (328)
Q Consensus 305 --~-~~~~~~~l~~~~~~~~ 321 (328)
. +++++++|+++++||+
T Consensus 322 ~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 322 GRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp TCCSCCCHHHHHHHHHCCSC
T ss_pred ccCCcCCHHHHHHHHHHHhh
Confidence 4 7899999999999874
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=310.99 Aligned_cols=302 Identities=19% Similarity=0.208 Sum_probs=226.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-------hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-------PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
+|+|||||||||||++++++|+++|++|++++|.... ...+..+.... ..+++++.+|++|++++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT--GRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc--CCceEEEECCCCCHHHHHHHHHh
Confidence 5789999999999999999999999999999986543 12222211111 2468899999999999999988
Q ss_pred -CccEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020266 81 -GCDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (328)
Q Consensus 81 -~~d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 158 (328)
++|+|||+|+..... ..+.+...+++|+.++.+++++|++. ++++|||+||.+ +|+.. ...+++|+++..|
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~-~~g~~----~~~~~~E~~~~~p- 152 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSAT-VYGNP----QYLPLDEAHPTGG- 152 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGG-GGCSC----SSSSBCTTSCCCC-
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh-CCCEEEEECcHH-HhCCC----CCCCcCCCCCCCC-
Confidence 899999999975321 11233478899999999999999987 788999999976 45432 3467888877655
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHh-cCccEEEEcCCcccCCCCC------CC--CcchHHHHHHHHh--CCC--C---
Q 020266 159 VCKQSELWYPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQ------PT--LNTSAAAVLSLIK--GAQ--T--- 222 (328)
Q Consensus 159 ~~~~~~~~Y~~sK~~~E~~~~~~~~~-~~~~~~ilRp~~v~G~~~~------~~--~~~~~~~~~~~~~--~~~--~--- 222 (328)
..+.|+.+|.++|.+++.++.+ .+++++++||+++|||... .. ...+...+.+... +.+ .
T Consensus 153 ----~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 228 (348)
T 1ek6_A 153 ----CTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGN 228 (348)
T ss_dssp ----CSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECS
T ss_pred ----CCCchHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCC
Confidence 1367999999999999999877 2399999999999999531 10 1223344444444 222 1
Q ss_pred -----CCCCCccceeHHHHHHHHHHhhcCC--CCC-CcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCce
Q 020266 223 -----YPNVTFGWVNVKDVANAHIQAFEVP--SAN-GRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC-ADDKPHVPTY 292 (328)
Q Consensus 223 -----~~~~~~~~v~v~D~a~~~~~~~~~~--~~~-g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~ 292 (328)
-+++.++|+|++|+|++++.+++++ ..+ ++||+++ +.+|+.|+++.+.+.+|.. ++... +........+
T Consensus 229 ~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~ 307 (348)
T 1ek6_A 229 DYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKK-IPYKVVARREGDVAAC 307 (348)
T ss_dssp CSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSC-CCEEEECCCTTCCSEE
T ss_pred cccCCCCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCC-CceeeCCCCCccchhh
Confidence 1356789999999999999999764 233 4999975 7899999999999998742 22211 1112223467
Q ss_pred ecchHHH-HhcCCc-cccHHHHHHHHHHHHHHcC
Q 020266 293 QVLKEKV-KNLGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 293 ~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
.+|++|+ +.|||+ .++++++|+++++|++++.
T Consensus 308 ~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~ 341 (348)
T 1ek6_A 308 YANPSLAQEELGWTAALGLDRMCEDLWRWQKQNP 341 (348)
T ss_dssp CBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred ccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 7999999 889999 7899999999999998763
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=310.75 Aligned_cols=303 Identities=15% Similarity=0.230 Sum_probs=228.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcC-chHHhhCCccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG-SFDSIVDGCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~d~vih 87 (328)
|+|||||||||||++++++|+++ |++|++++|+..+...+. ...+++++.+|++|+. .+.++++++|+|||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih 73 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHSEWIEYHVKKCDVVLP 73 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------TCTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh-------cCCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence 57999999999999999999998 899999999865533211 1347899999999854 57888889999999
Q ss_pred ccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc-ccCCc
Q 020266 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC-KQSEL 165 (328)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~-~~~~~ 165 (328)
+||..... ........+++|+.++.+++++|++. + ++|||+||.+ +|+.. ...+++|+++..+..+ ..+.+
T Consensus 74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~v~~SS~~-v~g~~----~~~~~~e~~~~~~~~~~~~~~~ 146 (345)
T 2bll_A 74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSE-VYGMC----SDKYFDEDHSNLIVGPVNKPRW 146 (345)
T ss_dssp CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGG-GGBTC----CCSSBCTTTCCCBCCCTTCGGG
T ss_pred cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecHH-HcCCC----CCCCcCCcccccccCcccCccc
Confidence 99974321 11223477899999999999999997 6 8999999976 45432 2345777765422111 11345
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC-------CcchHHHHHHHHhCCCC--C--CCCCccceeHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT-------LNTSAAAVLSLIKGAQT--Y--PNVTFGWVNVK 234 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~--~--~~~~~~~v~v~ 234 (328)
.|+.+|.++|.+++.++.+++++++++||+.+|||+.... ...+..++.++..+.+. + +++.++|+|++
T Consensus 147 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~ 226 (345)
T 2bll_A 147 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 226 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHH
Confidence 7999999999999999888899999999999999986431 12345667777777742 2 46788999999
Q ss_pred HHHHHHHHhhcCCC--C-CCcEEEec-C-ccCHHHHHHHHHHhCCCCC----CCCCCC----C-------CCCCCCceec
Q 020266 235 DVANAHIQAFEVPS--A-NGRYCLVE-R-VSHYSEIVNIIRELYPAFQ----LPEKCA----D-------DKPHVPTYQV 294 (328)
Q Consensus 235 D~a~~~~~~~~~~~--~-~g~~~~~~-~-~~~~~el~~~i~~~~~~~~----~~~~~~----~-------~~~~~~~~~~ 294 (328)
|+|++++.+++++. . +++||+++ + .+|+.|+++.+.+.+|... .|.+.. . .........+
T Consensus 227 Dva~a~~~~~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (345)
T 2bll_A 227 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKP 306 (345)
T ss_dssp HHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCB
T ss_pred HHHHHHHHHHhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccchhhhcc
Confidence 99999999998763 3 34899987 4 7999999999999876432 121110 0 0011235678
Q ss_pred chHHH-HhcCCc-cccHHHHHHHHHHHHHHcCCC
Q 020266 295 LKEKV-KNLGIE-FIPVEVSLKETIESLKEKGFV 326 (328)
Q Consensus 295 ~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~~~ 326 (328)
|++|+ +.|||+ .++++++|+++++|++++..+
T Consensus 307 d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~ 340 (345)
T 2bll_A 307 SIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (345)
T ss_dssp CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred cHHHHHHhcCCCccccHHHHHHHHHHHHHHcCCC
Confidence 99999 889999 679999999999999887553
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=307.58 Aligned_cols=271 Identities=13% Similarity=0.074 Sum_probs=214.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC-ccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG-CDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~d~v 85 (328)
|+||+||||| +||||++|+++|+++|++|++++|+.++. ..+++++.+|++|++++.+++++ +|+|
T Consensus 1 M~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~~d~v 67 (286)
T 3gpi_A 1 MSLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM------------PAGVQTLIADVTRPDTLASIVHLRPEIL 67 (286)
T ss_dssp -CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC------------CTTCCEEECCTTCGGGCTTGGGGCCSEE
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCCceEEccCCChHHHHHhhcCCCCEE
Confidence 3467899999 59999999999999999999999986652 24788999999999999999987 9999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
||+|+.... .....+++|+.++.+++++|++. ++++|||+||.+ +|+.. ...+++|+++..|. +
T Consensus 68 ih~a~~~~~----~~~~~~~~n~~~~~~ll~a~~~~-~~~~~v~~SS~~-vyg~~----~~~~~~E~~~~~p~------~ 131 (286)
T 3gpi_A 68 VYCVAASEY----SDEHYRLSYVEGLRNTLSALEGA-PLQHVFFVSSTG-VYGQE----VEEWLDEDTPPIAK------D 131 (286)
T ss_dssp EECHHHHHH----C-----CCSHHHHHHHHHHTTTS-CCCEEEEEEEGG-GCCCC----CSSEECTTSCCCCC------S
T ss_pred EEeCCCCCC----CHHHHHHHHHHHHHHHHHHHhhC-CCCEEEEEcccE-EEcCC----CCCCCCCCCCCCCC------C
Confidence 999986322 12367789999999999999987 888999999975 55432 45678999887764 6
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHh
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQA 243 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~v~D~a~~~~~~ 243 (328)
.|+.+|.++|.+ +.+ ++++++||+.+|||+.. .++..+.. .. ..+++.++|+|++|+|++++.+
T Consensus 132 ~Y~~sK~~~E~~-~~~-----~~~~ilR~~~v~G~~~~-------~~~~~~~~-~~~~~~~~~~~~~i~v~Dva~~~~~~ 197 (286)
T 3gpi_A 132 FSGKRMLEAEAL-LAA-----YSSTILRFSGIYGPGRL-------RMIRQAQT-PEQWPARNAWTNRIHRDDGAAFIAYL 197 (286)
T ss_dssp HHHHHHHHHHHH-GGG-----SSEEEEEECEEEBTTBC-------HHHHHTTC-GGGSCSSBCEECEEEHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH-Hhc-----CCeEEEecccccCCCch-------hHHHHHHh-cccCCCcCceeEEEEHHHHHHHHHHH
Confidence 799999999998 543 89999999999999754 23344444 32 2256788999999999999999
Q ss_pred hcCC---CCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCc-cc-cHHHHHHHHH
Q 020266 244 FEVP---SANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE-FI-PVEVSLKETI 317 (328)
Q Consensus 244 ~~~~---~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~-~~-~~~~~l~~~~ 317 (328)
+.++ ..+++||+++ +.+|+.|+++.+++.+|... +....+ .......+|++|++.|||+ .. +++++|++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~--~~~~~~~~d~~k~~~lG~~p~~~~l~e~l~~~~ 274 (286)
T 3gpi_A 198 IQQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAY-PAGATP--PVQGNKKLSNARLLASGYQLIYPDYVSGYGALL 274 (286)
T ss_dssp HHHHTTSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCC-CCSCCC--CBCSSCEECCHHHHHTTCCCSSCSHHHHHHHHH
T ss_pred HhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCC-CCCCCc--ccCCCeEeeHHHHHHcCCCCcCCcHHHHHHHHH
Confidence 9873 4566999986 78999999999999998532 222111 3345677999999999999 65 7999999999
Q ss_pred HHHHHc
Q 020266 318 ESLKEK 323 (328)
Q Consensus 318 ~~~~~~ 323 (328)
+|+..+
T Consensus 275 ~~~~~~ 280 (286)
T 3gpi_A 275 AAMREG 280 (286)
T ss_dssp HHHTC-
T ss_pred HHHhcc
Confidence 998643
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=315.96 Aligned_cols=306 Identities=18% Similarity=0.190 Sum_probs=226.4
Q ss_pred CCeEEEECCccHHHHHHHHHHH-HCCCeEEEEecCCCC---------hhhhhhhhhccCC---CCc---EEEEEccCCCc
Q 020266 9 GKVVCVTGASGYIASWLVKLLL-SRGYTVKASVRDPND---------PKKTRHLLALDGA---SER---LQLFKANLLEE 72 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~---------~~~~~~~~~~~~~---~~~---~~~~~~Dl~~~ 72 (328)
+|+|||||||||||++++++|+ ++|++|++++|+... ...+...+..... ..+ ++++.+|++|+
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 4589999999999999999999 999999999997654 2222221111111 124 88999999999
Q ss_pred CchHHhhC--C-ccEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCC---CCC
Q 020266 73 GSFDSIVD--G-CDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKP---RTP 145 (328)
Q Consensus 73 ~~~~~~~~--~-~d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~---~~~ 145 (328)
+.+.++++ + +|+|||+|+..... ....+...+++|+.++.+++++|++. ++++|||+||.+ +|+.... ...
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~iv~~SS~~-v~g~~~~~~~~~~ 159 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFSSSAA-IFGNPTMGSVSTN 159 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGG-GTBSCCC-----C
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh-CCCEEEEECCHH-HhCCCCccccccc
Confidence 99999887 6 99999999975421 11234578999999999999999987 788999999975 5543210 011
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC-------CcchHHHHH----
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT-------LNTSAAAVL---- 214 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~---- 214 (328)
..+++|+++..| .+.|+.+|.++|.+++.++.+++++++++||+++|||+.... ...+...+.
T Consensus 160 ~~~~~E~~~~~p------~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~ 233 (397)
T 1gy8_A 160 AEPIDINAKKSP------ESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVM 233 (397)
T ss_dssp CCCBCTTSCCBC------SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHH
T ss_pred ccCcCccCCCCC------CCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHH
Confidence 357788877654 367999999999999999988899999999999999964211 122333333
Q ss_pred -HHHhCCC--------------C--------CCCCCccceeHHHHHHHHHHhhcCCC-C-----C---CcEEEec-CccC
Q 020266 215 -SLIKGAQ--------------T--------YPNVTFGWVNVKDVANAHIQAFEVPS-A-----N---GRYCLVE-RVSH 261 (328)
Q Consensus 215 -~~~~~~~--------------~--------~~~~~~~~v~v~D~a~~~~~~~~~~~-~-----~---g~~~~~~-~~~~ 261 (328)
++..+.. + -+++.++|+|++|+|++++.+++++. . . ++||+++ +.+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s 313 (397)
T 1gy8_A 234 SDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYS 313 (397)
T ss_dssp HHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEE
T ss_pred HHHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCccc
Confidence 4334321 1 23567899999999999999987532 1 2 6899975 7899
Q ss_pred HHHHHHHHHHhCCCCCCCCCC-CCCCCCCCceecchHHH-HhcCCc-cc-cHHHHHHHHHHHHHHc
Q 020266 262 YSEIVNIIRELYPAFQLPEKC-ADDKPHVPTYQVLKEKV-KNLGIE-FI-PVEVSLKETIESLKEK 323 (328)
Q Consensus 262 ~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~-~~lg~~-~~-~~~~~l~~~~~~~~~~ 323 (328)
+.|+++.+.+.+|.. .+... +..........+|++|+ +.|||+ .+ +++++|+++++|++++
T Consensus 314 ~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~ 378 (397)
T 1gy8_A 314 VREVIEVARKTTGHP-IPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH 378 (397)
T ss_dssp HHHHHHHHHHHHCCC-CCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-CCeeeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999998742 22211 11122234678899999 889999 55 9999999999999876
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=312.99 Aligned_cols=305 Identities=12% Similarity=0.112 Sum_probs=224.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--ccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~v 85 (328)
||+|||||||||||++++++|+++|++|++++|.. .........+. ...+++++.+|++|++++.+++++ +|+|
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS---SLGNFEFVHGDIRNKNDVTRLITKYMPDSC 77 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhc---cCCceEEEEcCCCCHHHHHHHHhccCCCEE
Confidence 46899999999999999999999999999999854 22221111111 123688999999999999999987 9999
Q ss_pred EEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCcc-EEEEecchhhhccCCCCCC------------CCccccC
Q 020266 86 CHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTSSMAAVLNTGKPRT------------PDVVVDE 151 (328)
Q Consensus 86 ih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~------------~~~~~~E 151 (328)
||+|+..... ..+.+...+++|+.++.+++++|++. +++ +|||+||.+ +|+...... ...+++|
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~iv~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~~e 155 (347)
T 1orr_A 78 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNK-VYGDLEQYKYNETETRYTCVDKPNGYDE 155 (347)
T ss_dssp EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGG-GGTTCTTSCEEECSSCEEETTCTTCBCT
T ss_pred EECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEeccHH-HhCCCCcCCcccccccccccccccCccc
Confidence 9999974321 11234478899999999999999987 554 999999976 454221100 0122555
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCC-----CC--
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGA-----QT-- 222 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~-----~~-- 222 (328)
+.+..+ .+.|+.+|.++|.+++.++.+++++++++||+.+|||...... ..+..++.+...+. +.
T Consensus 156 ~~~~~~------~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (347)
T 1orr_A 156 STQLDF------HSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTI 229 (347)
T ss_dssp TSCCCC------CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred cCCCCC------CCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEE
Confidence 555443 3679999999999999999888999999999999999764321 23445555555443 32
Q ss_pred C--CCCCccceeHHHHHHHHHHhhcC-CCCCC-cEEEecC---ccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecc
Q 020266 223 Y--PNVTFGWVNVKDVANAHIQAFEV-PSANG-RYCLVER---VSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVL 295 (328)
Q Consensus 223 ~--~~~~~~~v~v~D~a~~~~~~~~~-~~~~g-~~~~~~~---~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (328)
+ +++.++|+|++|+|++++.++.+ ....| +||++++ .+|+.|+++.+.+.+|........+........+.+|
T Consensus 230 ~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d 309 (347)
T 1orr_A 230 SGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVAD 309 (347)
T ss_dssp ESSSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBC
T ss_pred ecCCcceEeeEEHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCCCCCcceeecC
Confidence 2 46788999999999999999985 22345 8999864 4999999999999987431111111112223456789
Q ss_pred hHHH-HhcCCc-cccHHHHHHHHHHHHHHcC
Q 020266 296 KEKV-KNLGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 296 ~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
++|+ +.|||+ .++++++|+++++|++++-
T Consensus 310 ~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~ 340 (347)
T 1orr_A 310 IKKITNAIDWSPKVSAKDGVQKMYDWTSSIL 340 (347)
T ss_dssp CHHHHHHHCCCCCSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999 889999 6899999999999998764
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=308.80 Aligned_cols=284 Identities=15% Similarity=0.143 Sum_probs=219.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 85 (328)
++|+|||||||||||++|+++|+++|++|+++.|+. .+|++|++++.++++ ++|+|
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~----------------------~~D~~d~~~~~~~~~~~~~d~v 59 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASERIDQV 59 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc----------------------cCCccCHHHHHHHHHhcCCCEE
Confidence 357899999999999999999999999999988752 179999999999998 89999
Q ss_pred EEccCCCCCC--CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCC----CCccc
Q 020266 86 CHTASPFYHD--AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF----SDPEV 159 (328)
Q Consensus 86 ih~a~~~~~~--~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~----~~~~~ 159 (328)
||+|+..... ........+++|+.++.+++++|++. ++++|||+||.+ +|+.. ...+++|+++ ..|.
T Consensus 60 ih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~-vyg~~----~~~~~~E~~~~~~~~~p~- 132 (321)
T 1e6u_A 60 YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSC-IYPKL----AKQPMAESELLQGTLEPT- 132 (321)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGG-GSCTT----CCSSBCGGGTTSSCCCGG-
T ss_pred EEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccHH-HcCCC----CCCCcCccccccCCCCCC-
Confidence 9999975310 11223478899999999999999997 788999999976 45422 2356777763 2221
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC---CcchHHHHHHHHh----C-CC--CC--CCCC
Q 020266 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIK----G-AQ--TY--PNVT 227 (328)
Q Consensus 160 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~----~-~~--~~--~~~~ 227 (328)
.+.|+.+|..+|.+++.++.+++++++++||+.+|||+.... ...+..++..+.. | .+ .+ +++.
T Consensus 133 ----~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ 208 (321)
T 1e6u_A 133 ----NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPM 208 (321)
T ss_dssp ----GHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCE
T ss_pred ----CCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEE
Confidence 247999999999999999888899999999999999986532 1334455555543 3 32 22 4678
Q ss_pred ccceeHHHHHHHHHHhhcCCCC---------CCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchH
Q 020266 228 FGWVNVKDVANAHIQAFEVPSA---------NGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKE 297 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~~---------~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (328)
++|+|++|+|++++.+++++.. +++||+++ +.+|+.|+++.+.+.+|........+..........+|++
T Consensus 209 ~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~ 288 (321)
T 1e6u_A 209 REFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288 (321)
T ss_dssp ECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCH
T ss_pred EEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCCCCCcccccCCHH
Confidence 8999999999999999987644 36999975 7899999999999998743111111111223346789999
Q ss_pred HHHhcCCc-cccHHHHHHHHHHHHHHcC
Q 020266 298 KVKNLGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 298 k~~~lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
|+++|||+ .++++++|+++++|++++.
T Consensus 289 k~~~lG~~p~~~~~~~l~~~~~~~~~~~ 316 (321)
T 1e6u_A 289 RLHQLGWYHEISLEAGLASTYQWFLENQ 316 (321)
T ss_dssp HHHHTTCCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHhcCCccCCcHHHHHHHHHHHHHHHH
Confidence 99339999 6799999999999998764
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=313.95 Aligned_cols=306 Identities=18% Similarity=0.191 Sum_probs=224.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh-----------------hhhhhhhccCCCCcEEEEEccCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-----------------KTRHLLALDGASERLQLFKANLL 70 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~Dl~ 70 (328)
++++|||||||||||++++++|+++|++|++++|...... .+...... ...+++++.+|++
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~~~Dl~ 87 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL--TGKSIELYVGDIC 87 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH--HCCCCEEEESCTT
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhc--cCCceEEEECCCC
Confidence 5789999999999999999999999999999988532211 11111111 1246899999999
Q ss_pred CcCchHHhhCC--ccEEEEccCCCCCC--CCCc--chhhhhHHHHHHHHHHHHHhcCCCc-cEEEEecchhhhccCCCCC
Q 020266 71 EEGSFDSIVDG--CDGVCHTASPFYHD--AKDP--QVELLDPAVKGTLNVLNSCAKFPSI-KRVVLTSSMAAVLNTGKPR 143 (328)
Q Consensus 71 ~~~~~~~~~~~--~d~vih~a~~~~~~--~~~~--~~~~~~~N~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~ 143 (328)
|++++.+++++ +|+|||+||..... ..++ +...+++|+.|+.+++++|++. +. ++|||+||.+ +|+..
T Consensus 88 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~~~V~~SS~~-vyg~~--- 162 (404)
T 1i24_A 88 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVKLGTMG-EYGTP--- 162 (404)
T ss_dssp SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEECCGG-GGCCC---
T ss_pred CHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh-CCCcEEEEeCcHH-HhCCC---
Confidence 99999998887 99999999974321 1122 1247789999999999999987 55 5999999975 55432
Q ss_pred CCCccccCCCCCCc--------cccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC----------
Q 020266 144 TPDVVVDETWFSDP--------EVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---------- 205 (328)
Q Consensus 144 ~~~~~~~E~~~~~~--------~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~---------- 205 (328)
..+++|+.+... ..+..+.+.|+.||.++|.+++.++.+++++++++||+.||||+....
T Consensus 163 --~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~ 240 (404)
T 1i24_A 163 --NIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRL 240 (404)
T ss_dssp --SSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCC
T ss_pred --CCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCcccccccccccc
Confidence 134555411000 001123467999999999999999888899999999999999976421
Q ss_pred ------CcchHHHHHHHHhCCCC--C--CCCCccceeHHHHHHHHHHhhcCCCCCC---cEEEecCccCHHHHHHHHHHh
Q 020266 206 ------LNTSAAAVLSLIKGAQT--Y--PNVTFGWVNVKDVANAHIQAFEVPSANG---RYCLVERVSHYSEIVNIIREL 272 (328)
Q Consensus 206 ------~~~~~~~~~~~~~~~~~--~--~~~~~~~v~v~D~a~~~~~~~~~~~~~g---~~~~~~~~~~~~el~~~i~~~ 272 (328)
...+..++.++..+.+. + +++.++|+|++|+|++++.+++++...| +||++++.+|+.|+++.+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~~~~s~~e~~~~i~~~ 320 (404)
T 1i24_A 241 DYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKA 320 (404)
T ss_dssp CCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 23456677778887742 3 3577999999999999999998765434 899988889999999999997
Q ss_pred ---CCCCCCCC-CCCCCC--CCCCceecchHHHHhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 273 ---YPAFQLPE-KCADDK--PHVPTYQVLKEKVKNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 273 ---~~~~~~~~-~~~~~~--~~~~~~~~~~~k~~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
+|.. .+. ..+... .....+.+|++|+++|||+ .++++++++++++|++..
T Consensus 321 ~~~~g~~-~~~~~~p~~~~~~~~~~~~~d~~k~~~LG~~p~~~~~~~l~~~~~~~~~~ 377 (404)
T 1i24_A 321 GSKLGLD-VKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQF 377 (404)
T ss_dssp HHTTTCC-CCEEEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHT
T ss_pred HHhhCCC-ccccccCcccCccccceEecCHHHHHHcCCCcCcCHHHHHHHHHHHHHhh
Confidence 5532 211 111111 1223466899999779999 779999999999998654
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=310.24 Aligned_cols=294 Identities=18% Similarity=0.187 Sum_probs=222.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+|||||||||||++|+++|+++| ++|++++|+..... ...+ .++. +.+|++|++.+.++++
T Consensus 43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~-------~~~~-~~~d~~~~~~~~~~~~~~~~ 113 (357)
T 2x6t_A 43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVNL-------VDLN-IADYMDKEDFLIQIMAGEEF 113 (357)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG-GGGT-------TTSC-CSEEEEHHHHHHHHHTTCCC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch-hhcc-------cCce-EeeecCcHHHHHHHHhhccc
Confidence 3456889999999999999999999999 99999999765421 1111 1223 6789999988988887
Q ss_pred -CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020266 81 -GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (328)
Q Consensus 81 -~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 159 (328)
++|+|||+|+..... ...+...+++|+.++.+++++|++. ++ +|||+||.+ +|+.. ...+++|+++..|
T Consensus 114 ~~~d~Vih~A~~~~~~-~~~~~~~~~~n~~~~~~ll~a~~~~-~~-r~V~~SS~~-v~g~~----~~~~~~E~~~~~p-- 183 (357)
T 2x6t_A 114 GDVEAIFHEGACSSTT-EWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAA-TYGGR----TSDFIESREYEKP-- 183 (357)
T ss_dssp SSCCEEEECCSCCCTT-CCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGG-GGCSC----SSCCCSSGGGCCC--
T ss_pred CCCCEEEECCcccCCc-cCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcchH-HhCCC----CCCCcCCcCCCCC--
Confidence 599999999975543 3344588999999999999999987 67 999999976 45432 2346778776555
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC---CcchHHHHHHHHhCCCC--CC--CC-Cccce
Q 020266 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKGAQT--YP--NV-TFGWV 231 (328)
Q Consensus 160 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~--~~--~~-~~~~v 231 (328)
.+.|+.+|.++|.+++.++.+++++++++||+.+|||+.... ...+..++..+..+.+. ++ ++ .++|+
T Consensus 184 ----~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 259 (357)
T 2x6t_A 184 ----LNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFV 259 (357)
T ss_dssp ----SSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEE
T ss_pred ----CChhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccE
Confidence 367999999999999999988899999999999999976432 13345566666776642 33 45 78999
Q ss_pred eHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCC---CCCCCceecchHHHHhcCC-c-
Q 020266 232 NVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADD---KPHVPTYQVLKEKVKNLGI-E- 305 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~~~lg~-~- 305 (328)
|++|+|++++.+++++. +++||+++ +.+|+.|+++.+.+.+|...++....+. ........+|++|++++|| .
T Consensus 260 ~v~Dva~ai~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lG~~~~ 338 (357)
T 2x6t_A 260 YVGDVADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKP 338 (357)
T ss_dssp EHHHHHHHHHHHHHHCC-CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGGTTSCCSBCCCCCHHHHHTTCCCC
T ss_pred EHHHHHHHHHHHHhcCC-CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCcccccccccccccCHHHHHHcCCCCC
Confidence 99999999999998766 66999975 7899999999999998854111111110 1112345678999966999 5
Q ss_pred cccHHHHHHHHHHHHHHc
Q 020266 306 FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~ 323 (328)
.++++++|+++++||+++
T Consensus 339 ~~~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 339 FKTVAEGVTEYMAWLNRD 356 (357)
T ss_dssp CCCHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 889999999999999754
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=310.17 Aligned_cols=302 Identities=19% Similarity=0.233 Sum_probs=227.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCC--ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 84 (328)
|+|||||||||||++++++|++. |++|++++|+.. ....+..+ ....+++++.+|++|++++.++++ ++|+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDI----SESNRYNFEHADICDSAEITRIFEQYQPDA 76 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTT----TTCTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhh----hcCCCeEEEECCCCCHHHHHHHHhhcCCCE
Confidence 36999999999999999999998 799999999652 22222111 113578999999999999999998 8999
Q ss_pred EEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCC-Ccc-------EEEEecchhhhccCCCC------CCCCccc
Q 020266 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFP-SIK-------RVVLTSSMAAVLNTGKP------RTPDVVV 149 (328)
Q Consensus 85 vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~-------~~v~~SS~~~~~~~~~~------~~~~~~~ 149 (328)
|||+||..... ....+...+++|+.++.+++++|.+.. +++ +|||+||.+ +||.... .....++
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~-v~g~~~~~~~~~~~~~~~~~ 155 (361)
T 1kew_A 77 VMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE-VYGDLPHPDEVENSVTLPLF 155 (361)
T ss_dssp EEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG-GGCCCCCGGGSCTTSCCCCB
T ss_pred EEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHH-HhCCCcccccccccccCCCC
Confidence 99999975421 112334789999999999999998751 344 999999976 4432210 0001167
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PN 225 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~ 225 (328)
+|+++..+ .+.|+.+|.++|.+++.++.+++++++++||+.+|||.... ...+..++.++..+.+ .+ +.
T Consensus 156 ~E~~~~~~------~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 228 (361)
T 1kew_A 156 TETTAYAP------SSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP-EKLIPLVILNALEGKPLPIYGKGD 228 (361)
T ss_dssp CTTSCCCC------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT-TSHHHHHHHHHHHTCCEEEETTSC
T ss_pred CCCCCCCC------CCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCc-ccHHHHHHHHHHcCCCceEcCCCc
Confidence 78776554 36799999999999999998889999999999999998643 2334556677777763 22 45
Q ss_pred CCccceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCC-CC--CC-----CCCCCCCCCCceecch
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF-QL--PE-----KCADDKPHVPTYQVLK 296 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~-~~--~~-----~~~~~~~~~~~~~~~~ 296 (328)
+.++|+|++|+|++++.++.++..+++||+++ ..+|+.|+++.+.+.++.. +. |. ...........+.+|+
T Consensus 229 ~~~~~i~v~Dva~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~ 308 (361)
T 1kew_A 229 QIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDA 308 (361)
T ss_dssp CEEEEEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCC
T ss_pred eeEeeEEHHHHHHHHHHHHhCCCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecCCCCcccceeecCH
Confidence 77899999999999999998654445999986 6799999999999887632 10 10 0111111224567899
Q ss_pred HHH-HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 297 EKV-KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 297 ~k~-~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
+|+ +.|||+ .++++++|+++++|++++
T Consensus 309 ~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 309 GKISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp HHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 999 779999 789999999999999765
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=302.57 Aligned_cols=292 Identities=15% Similarity=0.177 Sum_probs=223.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--Ccc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCD 83 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 83 (328)
.+++|+|||||||||||++|+++|+++|++|++++|+......... . ..+++++.+|++|++++.++++ ++|
T Consensus 17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~---l~~v~~~~~Dl~d~~~~~~~~~~~~~D 90 (330)
T 2pzm_A 17 RGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP---P---VAGLSVIEGSVTDAGLLERAFDSFKPT 90 (330)
T ss_dssp TTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSC---S---CTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhh---c---cCCceEEEeeCCCHHHHHHHHhhcCCC
Confidence 4457899999999999999999999999999999996554321101 0 1478999999999999999998 999
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
+|||+||.........+ . +++|+.++.+++++|.+. ++++|||+||.++ |+... ....+++|++ . +
T Consensus 91 ~vih~A~~~~~~~~~~~-~-~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~~-~~~~~--~~~~~~~E~~--~------~ 156 (330)
T 2pzm_A 91 HVVHSAAAYKDPDDWAE-D-AATNVQGSINVAKAASKA-GVKRLLNFQTALC-YGRPA--TVPIPIDSPT--A------P 156 (330)
T ss_dssp EEEECCCCCSCTTCHHH-H-HHHHTHHHHHHHHHHHHH-TCSEEEEEEEGGG-GCSCS--SSSBCTTCCC--C------C
T ss_pred EEEECCccCCCccccCh-h-HHHHHHHHHHHHHHHHHc-CCCEEEEecCHHH-hCCCc--cCCCCcCCCC--C------C
Confidence 99999997543222233 3 899999999999999987 7889999999864 54221 0112677775 2 2
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC-CccceeHHHHHH-HHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV-TFGWVNVKDVAN-AHI 241 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~D~a~-~~~ 241 (328)
.+.|+.+|.++|.+++.+ +++++++||+++|||+.. ...+..++..+..+...+++. .++|+|++|+|+ +++
T Consensus 157 ~~~Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~a~~ 230 (330)
T 2pzm_A 157 FTSYGISKTAGEAFLMMS----DVPVVSLRLANVTGPRLA--IGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADL 230 (330)
T ss_dssp CSHHHHHHHHHHHHHHTC----SSCEEEEEECEEECTTCC--SSHHHHHHHHHHTTCCCCEESCEECEEEHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCCC--CCHHHHHHHHHHcCCEEeCCCCEecceeHHHHHHHHHH
Confidence 356999999999999775 799999999999999852 234445566666655333322 689999999999 999
Q ss_pred HhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-----HhcCCc-cccHHHHHH
Q 020266 242 QAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-----KNLGIE-FIPVEVSLK 314 (328)
Q Consensus 242 ~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~lg~~-~~~~~~~l~ 314 (328)
.++.++. +++||+++ ..+|+.|+++.+.+.+|.. +....+.........+|++|+ ++|||+ .++++++|+
T Consensus 231 ~~~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~--~~~~~~~~~~~~~~~~d~~k~~~~~l~~lG~~p~~~~~~~l~ 307 (330)
T 2pzm_A 231 SLQEGRP-TGVFNVSTGEGHSIKEVFDVVLDYVGAT--LAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKVDFKDTIT 307 (330)
T ss_dssp HTSTTCC-CEEEEESCSCCEEHHHHHHHHHHHHTCC--CSSCCCEECCCTTSCSEECBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred HHhhcCC-CCEEEeCCCCCCCHHHHHHHHHHHhCCC--CceeCCCCcchhhccCCHHHHhhchHHHcCCcccCCHHHHHH
Confidence 9998765 55999986 7899999999999998854 211111111233456676666 779999 789999999
Q ss_pred HHHHHHHHcCCC
Q 020266 315 ETIESLKEKGFV 326 (328)
Q Consensus 315 ~~~~~~~~~~~~ 326 (328)
++++||++++.+
T Consensus 308 ~~~~~~~~~~~~ 319 (330)
T 2pzm_A 308 GQLAWYDKYGVT 319 (330)
T ss_dssp HHHHHHHHHCSC
T ss_pred HHHHHHHhhCcc
Confidence 999999998875
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=302.66 Aligned_cols=302 Identities=17% Similarity=0.169 Sum_probs=228.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--ccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~ 84 (328)
|++|+|||||||||||++++++|+++|++|++++|+...... ..+ .......+++++.+|++|++++.+++++ +|+
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 78 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS-WRL-KELGIENDVKIIHMDLLEFSNIIRTIEKVQPDE 78 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT-HHH-HHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc-ccH-hhccccCceeEEECCCCCHHHHHHHHHhcCCCE
Confidence 346899999999999999999999999999999998765321 111 1111234789999999999999988884 699
Q ss_pred EEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCc-cEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020266 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSI-KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (328)
Q Consensus 85 vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 162 (328)
|||+||..... ..+.+...+++|+.++.+++++|.+. ++ ++|||+||.+ +||.. ...+++|+.+..+
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~~-vyg~~----~~~~~~e~~~~~~----- 147 (345)
T 2z1m_A 79 VYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQASTSE-MFGKV----QEIPQTEKTPFYP----- 147 (345)
T ss_dssp EEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEEEGG-GGCSC----SSSSBCTTSCCCC-----
T ss_pred EEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEechh-hcCCC----CCCCCCccCCCCC-----
Confidence 99999975321 13345578999999999999999986 65 7999999976 45432 2346788776554
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCCC---CC--CCCCccceeHHH
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQ---TY--PNVTFGWVNVKD 235 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~---~~--~~~~~~~v~v~D 235 (328)
.+.|+.+|.++|.+++.++.+++++++++|+.++|||+..... ..+..++.++..+.. .. +++.++|+|++|
T Consensus 148 -~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D 226 (345)
T 2z1m_A 148 -RSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPE 226 (345)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHH
T ss_pred -CChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHH
Confidence 3679999999999999999888999999999999999754321 112333445555642 12 356789999999
Q ss_pred HHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC------CCCC------------CC---CCCCCCCcee
Q 020266 236 VANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ------LPEK------------CA---DDKPHVPTYQ 293 (328)
Q Consensus 236 ~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~------~~~~------------~~---~~~~~~~~~~ 293 (328)
+|++++.++.++. .++||+++ +.+|+.|+++.+.+.+|... +|.+ .. ..........
T Consensus 227 va~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (345)
T 2z1m_A 227 YVEAMWLMMQQPE-PDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILV 305 (345)
T ss_dssp HHHHHHHHHTSSS-CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCC
T ss_pred HHHHHHHHHhCCC-CceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCcceee
Confidence 9999999998764 47999975 78999999999999998531 1110 00 0111223456
Q ss_pred cchHHH-HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 294 VLKEKV-KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 294 ~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
+|++|+ +.|||+ .++++++|+++++|++++
T Consensus 306 ~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~ 337 (345)
T 2z1m_A 306 GNPEKAMKKLGWKPRTTFDELVEIMMEADLKR 337 (345)
T ss_dssp BCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHcCCcccCCHHHHHHHHHHHHHHH
Confidence 799999 889999 689999999999999764
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=307.29 Aligned_cols=302 Identities=17% Similarity=0.127 Sum_probs=227.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh--hhhhhhhhccC--CCCcEEEEEccCCCcCchHHhhCC--c
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALDG--ASERLQLFKANLLEEGSFDSIVDG--C 82 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~--~ 82 (328)
||+|||||||||||++++++|+++|++|++++|+.... ..+..+..... ...+++++.+|++|++++.+++++ +
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 103 (375)
T 1t2a_A 24 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 103 (375)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCC
Confidence 37899999999999999999999999999999976541 11211111000 124688999999999999988875 6
Q ss_pred cEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCc---cEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020266 83 DGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSI---KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (328)
Q Consensus 83 d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 158 (328)
|+|||+||..... ..+.+...+++|+.++.+++++|.+. ++ ++|||+||.++ |+.. ...+++|+++..|.
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~~~~iv~~SS~~~-~~~~----~~~~~~E~~~~~~~ 177 (375)
T 1t2a_A 104 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC-GLINSVKFYQASTSEL-YGKV----QEIPQKETTPFYPR 177 (375)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGGG-TCSC----SSSSBCTTSCCCCC
T ss_pred CEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEecchhh-hCCC----CCCCCCccCCCCCC
Confidence 9999999974321 11233478899999999999999987 55 79999999764 4322 23578888776553
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCC-CC--C--CCCCccce
Q 020266 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGA-QT--Y--PNVTFGWV 231 (328)
Q Consensus 159 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~-~~--~--~~~~~~~v 231 (328)
+.|+.+|.++|.+++.++.+++++++++||+++|||+..... ..+..++.++..+. +. + +++.++|+
T Consensus 178 ------~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i 251 (375)
T 1t2a_A 178 ------SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWG 251 (375)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCE
T ss_pred ------ChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeE
Confidence 679999999999999999888999999999999999754322 12334555666665 21 2 46789999
Q ss_pred eHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC------CCCC------------CCC---CCCCC
Q 020266 232 NVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ------LPEK------------CAD---DKPHV 289 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~------~~~~------------~~~---~~~~~ 289 (328)
|++|+|++++.+++++. .++||+++ +.+|+.|+++.+.+.+|... +|.+ ... .....
T Consensus 252 ~v~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (375)
T 1t2a_A 252 HAKDYVEAMWLMLQNDE-PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEV 330 (375)
T ss_dssp EHHHHHHHHHHHHHSSS-CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCC
T ss_pred EHHHHHHHHHHHHhcCC-CceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCcccc
Confidence 99999999999998764 47999975 78999999999999998531 1111 000 11122
Q ss_pred CceecchHHH-HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 290 PTYQVLKEKV-KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 290 ~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
..+.+|++|+ +.|||+ .++++++|+++++|+++.
T Consensus 331 ~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 366 (375)
T 1t2a_A 331 DFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVEL 366 (375)
T ss_dssp CBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHh
Confidence 3456899999 789999 679999999999999764
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=300.59 Aligned_cols=296 Identities=20% Similarity=0.251 Sum_probs=221.2
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--c
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--C 82 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~ 82 (328)
..++||+|||||||||||++++++|+++|++|++++|+...... .... ..+++++.+|++|++++.+++++ +
T Consensus 17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~ 90 (333)
T 2q1w_A 17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRRE---HLKD---HPNLTFVEGSIADHALVNQLIGDLQP 90 (333)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG---GSCC---CTTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchh---hHhh---cCCceEEEEeCCCHHHHHHHHhccCC
Confidence 34568899999999999999999999999999999997543221 0000 14789999999999999999987 9
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 162 (328)
|+|||+|+.........+ . +++|+.++.+++++|.+. ++++|||+||.+ +|+........ +++|++ .
T Consensus 91 D~vih~A~~~~~~~~~~~-~-~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~-~~g~~~~~~~~-~~~E~~--~------ 157 (333)
T 2q1w_A 91 DAVVHTAASYKDPDDWYN-D-TLTNCVGGSNVVQAAKKN-NVGRFVYFQTAL-CYGVKPIQQPV-RLDHPR--N------ 157 (333)
T ss_dssp SEEEECCCCCSCTTCHHH-H-HHHHTHHHHHHHHHHHHT-TCSEEEEEEEGG-GGCSCCCSSSB-CTTSCC--C------
T ss_pred cEEEECceecCCCccCCh-H-HHHHHHHHHHHHHHHHHh-CCCEEEEECcHH-HhCCCcccCCC-CcCCCC--C------
Confidence 999999997543212222 3 889999999999999997 788999999976 45411001122 677775 2
Q ss_pred CC-chhhhhhHHHHHHHHH-HHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC-CCCCccceeHHHHHHH
Q 020266 163 SE-LWYPLSKTLAEDAAWK-FAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY-PNVTFGWVNVKDVANA 239 (328)
Q Consensus 163 ~~-~~Y~~sK~~~E~~~~~-~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~D~a~~ 239 (328)
+. +.|+.+|.++|.+++. ++ +++++||+++|||+.. ...+..++.....+.+.+ +++.++|+|++|+|++
T Consensus 158 p~~~~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 230 (333)
T 2q1w_A 158 PANSSYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRNV--SGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARA 230 (333)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCC--SSHHHHHHHHHHTTCCCEEEECEECEEEHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCc--CcHHHHHHHHHHcCCeeeCCCceEeeEEHHHHHHH
Confidence 23 5699999999999987 64 7999999999999832 233455666666665333 4667899999999999
Q ss_pred HHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCC---CCCCCCCCCCceecchHHHHhcCCc-cccHHHHHH
Q 020266 240 HIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPE---KCADDKPHVPTYQVLKEKVKNLGIE-FIPVEVSLK 314 (328)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~lg~~-~~~~~~~l~ 314 (328)
++.++.++. +++||+++ ..+|+.|+++.+.+.+|...+.. .............+|++|++++||+ .++++++|+
T Consensus 231 i~~~~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~G~~p~~~~~~~l~ 309 (333)
T 2q1w_A 231 TVRAVDGVG-HGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEFTPLKETVA 309 (333)
T ss_dssp HHHHHTTCC-CEEEECSCSCCEEHHHHHHHHHHHTTCSSCCCCEEEECCTTSCCCCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred HHHHHhcCC-CCEEEeCCCCCccHHHHHHHHHHHhCCCCceeCCCCCcccccccccccCCHHHHHhcCCCcCCCHHHHHH
Confidence 999998876 56999976 78999999999999998541111 0001111224677899999333999 789999999
Q ss_pred HHHHHHHHcCCCC
Q 020266 315 ETIESLKEKGFVD 327 (328)
Q Consensus 315 ~~~~~~~~~~~~~ 327 (328)
++++||++++.++
T Consensus 310 ~~~~~~~~~~~~~ 322 (333)
T 2q1w_A 310 AAVAYFREYGVSG 322 (333)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHHCCCC
Confidence 9999999998765
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=301.99 Aligned_cols=301 Identities=19% Similarity=0.200 Sum_probs=221.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 86 (328)
|+|||||||||||++++++|+++|++|++++|.... ...+..+.... ..++.++.+|++|++++.++++ ++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc--CCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 479999999999999999999999999999875332 22221111111 2367889999999999988886 599999
Q ss_pred EccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
|+||..... ..+.....+++|+.++.++++++++. ++++|||+||.+ +|+.. ...+++|+.+..+ +.+
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~-~~g~~----~~~~~~e~~~~~~-----~~~ 147 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSAT-VYGDN----PKIPYVESFPTGT-----PQS 147 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGG-GGCSC----CSSSBCTTSCCCC-----CSS
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEccHH-HhCCC----CCCCcCcccCCCC-----CCC
Confidence 999974321 11123467899999999999999887 778999999975 55432 2456778766543 136
Q ss_pred hhhhhhHHHHHHHHHHHHhc-CccEEEEcCCcccCCCCC------CC--CcchHHHHHHHHhCC--C--C--------CC
Q 020266 166 WYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQ------PT--LNTSAAAVLSLIKGA--Q--T--------YP 224 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~------~~--~~~~~~~~~~~~~~~--~--~--------~~ 224 (328)
.|+.||.++|.+++.++.++ +++++++||+++|||... +. ...+...+.+...+. + . -+
T Consensus 148 ~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 227 (338)
T 1udb_A 148 PYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDG 227 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSS
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCC
Confidence 79999999999999998876 899999999999998421 11 122334444444432 1 1 13
Q ss_pred CCCccceeHHHHHHHHHHhhcCC--CCC-CcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCceecchHHH
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVP--SAN-GRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC-ADDKPHVPTYQVLKEKV 299 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~--~~~-g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~ 299 (328)
.+.++|+|++|+|++++.+++++ ..+ ++||+++ +.+|+.|+++.+.+.++.. ++... +........+.+|++|+
T Consensus 228 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~ 306 (338)
T 1udb_A 228 TGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKP-VNYHFAPRREGDLPAYWADASKA 306 (338)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSC-CCEEEECCCTTCCSBCCBCCHHH
T ss_pred ceeeeeEEHHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCC-CcceeCCCCCCchhhhhcCHHHH
Confidence 56789999999999999998753 222 4899975 7899999999999998742 22211 11112234567899999
Q ss_pred -HhcCCc-cccHHHHHHHHHHHHHHcC
Q 020266 300 -KNLGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 300 -~~lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
+.|||+ .++++++|+++++|++.+.
T Consensus 307 ~~~lG~~p~~~l~~~l~~~~~w~~~~~ 333 (338)
T 1udb_A 307 DRELNWRVTRTLDEMAQDTWHWQSRHP 333 (338)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHhcc
Confidence 889999 7799999999999998764
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=303.50 Aligned_cols=291 Identities=19% Similarity=0.260 Sum_probs=223.3
Q ss_pred eEEEECCccHHHHHHHHHHHHC--CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEE
Q 020266 11 VVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 86 (328)
+|||||||||||++++++|+++ |++|++++|+..... ++.++.+|++|++++.++++ ++|+||
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-------------~~~~~~~D~~d~~~~~~~~~~~~~d~vi 67 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-------------GIKFITLDVSNRDEIDRAVEKYSIDAIF 67 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-------------TCCEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-------------CceEEEecCCCHHHHHHHHhhcCCcEEE
Confidence 5999999999999999999998 899999998754421 35688999999999999987 899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
|+|+.............+++|+.++.+++++|++. ++++|||+||.++ |+.. ....+.+|+.+..| .+.
T Consensus 68 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~-~~~~---~~~~~~~e~~~~~p------~~~ 136 (317)
T 3ajr_A 68 HLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQH-RVEKVVIPSTIGV-FGPE---TPKNKVPSITITRP------RTM 136 (317)
T ss_dssp ECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGG-CCTT---SCSSSBCSSSCCCC------CSH
T ss_pred ECCcccCCccccChHHHhhhhhHHHHHHHHHHHHc-CCCEEEEecCHHH-hCCC---CCCCCccccccCCC------Cch
Confidence 99997532212234478899999999999999997 7889999999764 4322 12345667766554 367
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCCC--CC--CCCCccceeHHHHHHH
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANA 239 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~~ 239 (328)
|+.+|.++|.+++.++.+++++++++||+.+||+...+.. ......+.+.+.+.+ .+ +++.++|+|++|+|++
T Consensus 137 Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 216 (317)
T 3ajr_A 137 FGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKA 216 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHH
Confidence 9999999999999998888999999999999998643321 223444555555442 22 4678999999999999
Q ss_pred HHHhhcCCCC----CCcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCC--CCCCceecchHHH-HhcCCc-cccHHH
Q 020266 240 HIQAFEVPSA----NGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDK--PHVPTYQVLKEKV-KNLGIE-FIPVEV 311 (328)
Q Consensus 240 ~~~~~~~~~~----~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~-~~lg~~-~~~~~~ 311 (328)
++.+++++.. +++||++++.+|+.|+++.+.+.+|...++....... .......+|++|+ +.|||+ .+++++
T Consensus 217 ~~~~l~~~~~~~~~g~~~~i~~~~~s~~e~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~ 296 (317)
T 3ajr_A 217 LVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAATWPESLDSSEASNEWGFSIEYDLDR 296 (317)
T ss_dssp HHHHHHCCGGGCSSCSCEECCSEEECHHHHHHHHHTTCCSCCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCCCCCCHHH
T ss_pred HHHHHhCCccccccCceEecCCccccHHHHHHHHHHHCCccccccccccchhhccccccccCHHHHHHHcCCCCCCCHHH
Confidence 9999987542 3599998888999999999999988433222110000 0111346799999 889999 679999
Q ss_pred HHHHHHHHHHHcCC
Q 020266 312 SLKETIESLKEKGF 325 (328)
Q Consensus 312 ~l~~~~~~~~~~~~ 325 (328)
+++++++|++++-.
T Consensus 297 ~l~~~~~~~~~~~~ 310 (317)
T 3ajr_A 297 TIDDMIDHISEKLG 310 (317)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999987643
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=303.23 Aligned_cols=302 Identities=17% Similarity=0.167 Sum_probs=224.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh--hhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhCC--cc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDG--CD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~--~d 83 (328)
||+|||||||||||++++++|+++|++|++++|+.... ..+..+.... ....+++++.+|++|++++.+++++ +|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 57899999999999999999999999999999976532 1121111000 0124788999999999999988875 79
Q ss_pred EEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCc---cEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020266 84 GVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSI---KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (328)
Q Consensus 84 ~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 159 (328)
+|||+||..... ..+.+...+++|+.++.+++++|.+. ++ ++||++||.+ +|+.. ...+++|+++..|.
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~~iv~~SS~~-v~g~~----~~~~~~E~~~~~~~- 153 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL-GLEKKTRFYQASTSE-LYGLV----QEIPQKETTPFYPR- 153 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGG-GGTTC----CSSSBCTTSCCCCC-
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCCCcEEEEeCChh-hhCCC----CCCCCCccCCCCCC-
Confidence 999999974422 22334577899999999999999997 65 7999999976 45422 23577888776653
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCCC-C--C--CCCCcccee
Q 020266 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQ-T--Y--PNVTFGWVN 232 (328)
Q Consensus 160 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~-~--~--~~~~~~~v~ 232 (328)
+.|+.+|.++|.+++.++.+++++++++|++++|||+..... ..+..++..+..|.+ . + +++.++|+|
T Consensus 154 -----~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~ 228 (372)
T 1db3_A 154 -----SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGH 228 (372)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEE
T ss_pred -----ChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeE
Confidence 679999999999999999888999999999999999754322 123345555666652 1 2 467899999
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC------CCCC----------------------CC
Q 020266 233 VKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ------LPEK----------------------CA 283 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~------~~~~----------------------~~ 283 (328)
++|+|++++.+++++. .++||+++ +.+|+.|+++.+.+.+|... +|.+ ..
T Consensus 229 v~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (372)
T 1db3_A 229 AKDYVKMQWMMLQQEQ-PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVD 307 (372)
T ss_dssp HHHHHHHHHHTTSSSS-CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEEC
T ss_pred HHHHHHHHHHHHhcCC-CceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccceeecc
Confidence 9999999999998764 47999875 78999999999999987421 1110 00
Q ss_pred C---CCCCCCceecchHHH-HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 284 D---DKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 284 ~---~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
+ .......+.+|++|+ +.|||+ .++++++|+++++||+++
T Consensus 308 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 352 (372)
T 1db3_A 308 PRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEA 352 (372)
T ss_dssp GGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred ccccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHh
Confidence 0 111223456899999 889999 789999999999999764
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=301.08 Aligned_cols=270 Identities=14% Similarity=0.041 Sum_probs=215.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 87 (328)
|+|||||||||||++++++|+++|++|++++|. .+|++|++.+.++++ ++|+|||
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~D~~d~~~~~~~~~~~~~d~vi~ 62 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDITNISQVQQVVQEIRPHIIIH 62 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT-----------------------TSCTTCHHHHHHHHHHHCCSEEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc-----------------------ccCCCCHHHHHHHHHhcCCCEEEE
Confidence 389999999999999999999999999999992 179999999999988 7999999
Q ss_pred ccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
+|+..... ....+...+++|+.++.+++++|++. ++ +|||+||.++ |+. ....+++|+++..|. +.
T Consensus 63 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~SS~~v-y~~----~~~~~~~E~~~~~p~------~~ 129 (287)
T 3sc6_A 63 CAAYTKVDQAEKERDLAYVINAIGARNVAVASQLV-GA-KLVYISTDYV-FQG----DRPEGYDEFHNPAPI------NI 129 (287)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGG-SCC----CCSSCBCTTSCCCCC------SH
T ss_pred CCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchhhh-cCC----CCCCCCCCCCCCCCC------CH
Confidence 99975422 12344588999999999999999997 65 7999999764 532 234678998887764 67
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHhh
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~v~D~a~~~~~~~ 244 (328)
|+.+|.++|.+++.++ .+++++||+.+|||+.. ..+..++.....+.+ ..+++.++|+|++|+|++++.++
T Consensus 130 Y~~sK~~~E~~~~~~~----~~~~ilR~~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~ 202 (287)
T 3sc6_A 130 YGASKYAGEQFVKELH----NKYFIVRTSWLYGKYGN---NFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLI 202 (287)
T ss_dssp HHHHHHHHHHHHHHHC----SSEEEEEECSEECSSSC---CHHHHHHHHHTTCSEEEEECSCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC----CCcEEEeeeeecCCCCC---cHHHHHHHHHHcCCCeEeecCcccCceEHHHHHHHHHHHH
Confidence 9999999999998875 37899999999999753 234455555555553 44778899999999999999999
Q ss_pred cCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC-----CCCCCCCCceecchHHHHhcCCc-cccHHHHHHHHH
Q 020266 245 EVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC-----ADDKPHVPTYQVLKEKVKNLGIE-FIPVEVSLKETI 317 (328)
Q Consensus 245 ~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~k~~~lg~~-~~~~~~~l~~~~ 317 (328)
.++. +|+||+++ +.+|+.|+++.+.+.+|........ ...........+|++|++.+||. .++++++|++++
T Consensus 203 ~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~~l~~~~ 281 (287)
T 3sc6_A 203 HTSL-YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFF 281 (287)
T ss_dssp TSCC-CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHHH
T ss_pred hCCC-CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHHhhCCCCCccHHHHHHHHH
Confidence 9876 77999986 7899999999999999853111100 11122234567899999999999 899999999999
Q ss_pred HHHHHc
Q 020266 318 ESLKEK 323 (328)
Q Consensus 318 ~~~~~~ 323 (328)
+|++.+
T Consensus 282 ~~~~~~ 287 (287)
T 3sc6_A 282 IETKSH 287 (287)
T ss_dssp HHTC--
T ss_pred HHHhcC
Confidence 998653
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=300.69 Aligned_cols=289 Identities=18% Similarity=0.194 Sum_probs=211.6
Q ss_pred eEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC-----ccE
Q 020266 11 VVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG-----CDG 84 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~d~ 84 (328)
+|||||||||||++|+++|+++| ++|++++|+..... ..... ++. +.+|++|++.+.+++++ +|+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~-------~~~-~~~d~~~~~~~~~~~~~~~~~~~d~ 71 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVNLV-------DLN-IADYMDKEDFLIQIMAGEEFGDVEA 71 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG-GHHHH-------TSC-CSEEEEHHHHHHHHHTTCCCSSCCE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch-hhhcC-------cce-eccccccHHHHHHHHhccccCCCcE
Confidence 58999999999999999999999 99999999765431 11111 122 67899999889988875 999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
|||+|+..... .......+++|+.++.+++++|++. ++ +|||+||.+ +|+.. ...+++|+++..| .
T Consensus 72 vi~~a~~~~~~-~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~-v~g~~----~~~~~~E~~~~~p------~ 137 (310)
T 1eq2_A 72 IFHEGACSSTT-EWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAA-TYGGR----TSDFIESREYEKP------L 137 (310)
T ss_dssp EEECCSCCCTT-CCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGG-GGTTC----CSCBCSSGGGCCC------S
T ss_pred EEECcccccCc-ccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeHH-HhCCC----CCCCCCCCCCCCC------C
Confidence 99999976543 3344578999999999999999997 67 999999976 45432 2346788776555 3
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCC---CcchHHHHHHHHhCCC--CC--CCC-CccceeHHHH
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKGAQ--TY--PNV-TFGWVNVKDV 236 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~~~--~~--~~~-~~~~v~v~D~ 236 (328)
+.|+.+|.++|.+++.++.+++++++++||+.+|||+.... ...+..++..+..+.+ .+ +++ .++|+|++|+
T Consensus 138 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dv 217 (310)
T 1eq2_A 138 NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDV 217 (310)
T ss_dssp SHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHH
Confidence 67999999999999999988899999999999999975421 1334556666666663 23 356 8899999999
Q ss_pred HHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCC---CCCCCceecchHHHHhcCC-c-cccHH
Q 020266 237 ANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADD---KPHVPTYQVLKEKVKNLGI-E-FIPVE 310 (328)
Q Consensus 237 a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~~~lg~-~-~~~~~ 310 (328)
|++++.++.++. +++||+++ +.+|+.|+++.+.+.+|...+.....+. ........+|++|++++|| . .++++
T Consensus 218 a~~~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~l~ 296 (310)
T 1eq2_A 218 ADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVA 296 (310)
T ss_dssp HHHHHHHHHHCC-CEEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHHTTCCCCCCCHH
T ss_pred HHHHHHHHhcCC-CCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChhhhcccccccccchHHHHhcCCCCCCCCHH
Confidence 999999998776 66999975 7899999999999998753111111010 1112345678999966999 5 88999
Q ss_pred HHHHHHHHHHHHc
Q 020266 311 VSLKETIESLKEK 323 (328)
Q Consensus 311 ~~l~~~~~~~~~~ 323 (328)
++|+++++||+++
T Consensus 297 ~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 297 EGVTEYMAWLNRD 309 (310)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999764
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-41 Score=302.29 Aligned_cols=301 Identities=17% Similarity=0.144 Sum_probs=226.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh--hhhhhhhhccC-CCC-cEEEEEccCCCcCchHHhhCC--c
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALDG-ASE-RLQLFKANLLEEGSFDSIVDG--C 82 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~-~~~-~~~~~~~Dl~~~~~~~~~~~~--~ 82 (328)
+|+|||||||||||++|+++|+++|++|++++|+.... ..+..+..... ..+ +++++.+|++|++++.+++++ +
T Consensus 28 ~k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 107 (381)
T 1n7h_A 28 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 107 (381)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCC
Confidence 37899999999999999999999999999999976541 11111110000 012 688999999999999988885 6
Q ss_pred cEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCcc-----EEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020266 83 DGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIK-----RVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (328)
Q Consensus 83 d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-----~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 156 (328)
|+|||+|+..... ..+.+...+++|+.++.+++++|.+. +++ +|||+||.++ ||.. .. +++|+++..
T Consensus 108 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~~~~~~v~~SS~~v-yg~~----~~-~~~E~~~~~ 180 (381)
T 1n7h_A 108 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH-TIDSGRTVKYYQAGSSEM-FGST----PP-PQSETTPFH 180 (381)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHH-HHHHCCCCEEEEEEEGGG-GTTS----CS-SBCTTSCCC
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCccCCccEEEEeCcHHH-hCCC----CC-CCCCCCCCC
Confidence 9999999975421 11234478899999999999999986 554 9999999764 5322 22 788887766
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCCC-C--C--CCCCcc
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQ-T--Y--PNVTFG 229 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~-~--~--~~~~~~ 229 (328)
|. +.|+.+|.++|.+++.++.+++++++++|++++|||+..... ..+..++.++..+.+ . + +++.++
T Consensus 181 ~~------~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~ 254 (381)
T 1n7h_A 181 PR------SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRD 254 (381)
T ss_dssp CC------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEE
T ss_pred CC------CchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceee
Confidence 53 679999999999999999888999999999999999864322 112344555666652 1 2 367789
Q ss_pred ceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC---CCCCCC-CCCCCCCceecchHHH-HhcC
Q 020266 230 WVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ---LPEKCA-DDKPHVPTYQVLKEKV-KNLG 303 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~k~-~~lg 303 (328)
|+|++|+|++++.+++++. .++||+++ +.+|+.|+++.+.+.+|... ++.... ........+.+|++|+ +.||
T Consensus 255 ~v~v~Dva~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 333 (381)
T 1n7h_A 255 WGFAGDYVEAMWLMLQQEK-PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLG 333 (381)
T ss_dssp CEEHHHHHHHHHHHHTSSS-CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHC
T ss_pred eEEHHHHHHHHHHHHhCCC-CCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHHhcC
Confidence 9999999999999998764 47999986 78999999999999998531 111000 0111223466899999 7899
Q ss_pred Cc-cccHHHHHHHHHHHHHHc
Q 020266 304 IE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 304 ~~-~~~~~~~l~~~~~~~~~~ 323 (328)
|+ .++++++|+++++||.++
T Consensus 334 ~~p~~~l~e~l~~~~~~~~~~ 354 (381)
T 1n7h_A 334 WKPQVGFEKLVKMMVDEDLEL 354 (381)
T ss_dssp CCCCSCHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhh
Confidence 99 689999999999999764
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=319.84 Aligned_cols=306 Identities=15% Similarity=0.227 Sum_probs=232.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc-hHHhhCCccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIVDGCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~ 84 (328)
+++|+|||||||||||++++++|+++ |++|++++|+......+. ...+++++.+|++|+++ +.++++++|+
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~-------~~~~v~~v~~Dl~d~~~~~~~~~~~~D~ 385 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHSEWIEYHVKKCDV 385 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGT-------TCTTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhc-------cCCceEEEECCCCCcHHHHHHhhcCCCE
Confidence 46789999999999999999999998 899999999876543211 13578999999999865 7778889999
Q ss_pred EEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc-cc
Q 020266 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC-KQ 162 (328)
Q Consensus 85 vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~-~~ 162 (328)
|||+||..... ........+++|+.++.+++++|.+. + ++|||+||.++ |+.. ...+++|+++..+..+ ..
T Consensus 386 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~-~r~V~~SS~~v-yg~~----~~~~~~E~~~~~~~~p~~~ 458 (660)
T 1z7e_A 386 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSEV-YGMC----SDKYFDEDHSNLIVGPVNK 458 (660)
T ss_dssp EEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGGG-GBTC----CSSSBCTTTCCEEECCTTC
T ss_pred EEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHh-C-CEEEEEecHHH-cCCC----CCcccCCCccccccCcccC
Confidence 99999974421 11233478899999999999999998 6 89999999764 4322 2346778765321111 12
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCC-------CCcchHHHHHHHHhCCCC--C--CCCCccce
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP-------TLNTSAAAVLSLIKGAQT--Y--PNVTFGWV 231 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~-------~~~~~~~~~~~~~~~~~~--~--~~~~~~~v 231 (328)
+.+.|+.+|.++|.+++.++.+++++++++||+++|||+... ....+..++.++..+.+. . +++.++|+
T Consensus 459 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 538 (660)
T 1z7e_A 459 PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFT 538 (660)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECE
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEE
Confidence 345799999999999999988889999999999999998642 123355667777777742 2 46789999
Q ss_pred eHHHHHHHHHHhhcCCC---CCCcEEEec-C-ccCHHHHHHHHHHhCCCCC----CCCCCC-----------CCCCCCCc
Q 020266 232 NVKDVANAHIQAFEVPS---ANGRYCLVE-R-VSHYSEIVNIIRELYPAFQ----LPEKCA-----------DDKPHVPT 291 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~~---~~g~~~~~~-~-~~~~~el~~~i~~~~~~~~----~~~~~~-----------~~~~~~~~ 291 (328)
|++|+|++++.++.++. .+++||+++ + .+|+.|+++.+.+.+|... +|.+.. ........
T Consensus 539 ~v~Dva~ai~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 618 (660)
T 1z7e_A 539 DIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEH 618 (660)
T ss_dssp EHHHHHHHHHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCCCCSC
T ss_pred EHHHHHHHHHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccccccccchhh
Confidence 99999999999998764 234899986 4 7999999999998876321 222110 00012245
Q ss_pred eecchHHH-HhcCCc-cccHHHHHHHHHHHHHHcCCC
Q 020266 292 YQVLKEKV-KNLGIE-FIPVEVSLKETIESLKEKGFV 326 (328)
Q Consensus 292 ~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~~~ 326 (328)
..+|++|+ +.|||+ .++++++|+++++||+++..+
T Consensus 619 ~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~~ 655 (660)
T 1z7e_A 619 RKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_dssp CCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSCC
T ss_pred cccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhccc
Confidence 67899999 889999 689999999999999887653
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=295.55 Aligned_cols=275 Identities=14% Similarity=0.062 Sum_probs=216.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--ccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vih 87 (328)
|+|||||||||||++++++|+ +|++|++++|+.. ++.+|++|++++.+++++ +|+|||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-------------------~~~~D~~d~~~~~~~~~~~~~d~vih 60 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-------------------EFCGDFSNPKGVAETVRKLRPDVIVN 60 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-------------------SSCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-------------------cccccCCCHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999 8999999999752 246899999999998885 999999
Q ss_pred ccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
+|+..... ....+...+++|+.++.+++++|++. ++ +|||+||.+ +|+.. ...+++|+++..|. +.
T Consensus 61 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~-vy~~~----~~~~~~E~~~~~p~------~~ 127 (299)
T 1n2s_A 61 AAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-GA-WVVHYSTDY-VFPGT----GDIPWQETDATSPL------NV 127 (299)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-TC-EEEEEEEGG-GSCCC----TTCCBCTTSCCCCS------SH
T ss_pred CcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEeccc-EEeCC----CCCCCCCCCCCCCc------cH
Confidence 99975421 12334578999999999999999987 66 799999976 45322 23578888776653 67
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHhh
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~v~D~a~~~~~~~ 244 (328)
|+.+|.++|.+++.++ .+++++||+.+|||+.. ..+..++..+..+.+ ..+++.++|+|++|+|++++.++
T Consensus 128 Y~~sK~~~E~~~~~~~----~~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~ 200 (299)
T 1n2s_A 128 YGKTKLAGEKALQDNC----PKHLIFRTSWVYAGKGN---NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAI 200 (299)
T ss_dssp HHHHHHHHHHHHHHHC----SSEEEEEECSEECSSSC---CHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC----CCeEEEeeeeecCCCcC---cHHHHHHHHHhcCCCEEeecCcccCCeeHHHHHHHHHHHH
Confidence 9999999999998874 38999999999999754 334556666667763 34678899999999999999999
Q ss_pred cCC--C--CCCcEEEec-CccCHHHHHHHHHHhCCCCC----CCC--CCC-----CCCCCCCceecchHHH-HhcCCccc
Q 020266 245 EVP--S--ANGRYCLVE-RVSHYSEIVNIIRELYPAFQ----LPE--KCA-----DDKPHVPTYQVLKEKV-KNLGIEFI 307 (328)
Q Consensus 245 ~~~--~--~~g~~~~~~-~~~~~~el~~~i~~~~~~~~----~~~--~~~-----~~~~~~~~~~~~~~k~-~~lg~~~~ 307 (328)
+++ . .+++||+++ +.+|++|+++.+.+.+|... .+. ... ........+.+|++|+ +.|||++.
T Consensus 201 ~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 280 (299)
T 1n2s_A 201 RVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP 280 (299)
T ss_dssp HHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC
T ss_pred HHhccccccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcCCCCC
Confidence 875 2 256999986 78999999999998876321 010 000 1111234578899999 78999955
Q ss_pred cHHHHHHHHHHHHHHcC
Q 020266 308 PVEVSLKETIESLKEKG 324 (328)
Q Consensus 308 ~~~~~l~~~~~~~~~~~ 324 (328)
+++++|+++++||+++.
T Consensus 281 ~~~~~l~~~~~~~~~~~ 297 (299)
T 1n2s_A 281 QWELGVKRMLTEMFTTT 297 (299)
T ss_dssp BHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 89999999999998765
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-41 Score=298.19 Aligned_cols=296 Identities=15% Similarity=0.119 Sum_probs=225.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC-------CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG-------YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
+++|+|||||||||||++++++|+++| ++|++++|+...... ....+++++.+|++|++++.+++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~~ 83 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA--------GFSGAVDARAADLSAPGEAEKLV 83 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT--------TCCSEEEEEECCTTSTTHHHHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc--------ccCCceeEEEcCCCCHHHHHHHH
Confidence 567899999999999999999999999 899999997654321 01347889999999999999988
Q ss_pred C-CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC----CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 80 D-GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 80 ~-~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
+ ++|+|||+||.......+.+...+++|+.++.+++++|++.+ ++++||++||.+ +|+.. ...+++|+++
T Consensus 84 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~-~~~~~----~~~~~~E~~~ 158 (342)
T 2hrz_A 84 EARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIA-VFGAP----LPYPIPDEFH 158 (342)
T ss_dssp HTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGG-GCCSS----CCSSBCTTCC
T ss_pred hcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchH-hhCCC----CCCCcCCCCC
Confidence 4 899999999975422122345788999999999999998862 268999999975 55432 2356888887
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccC-CCCCCC--CcchHHHHHHHHhCCCC----CCCCC
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIG-PLLQPT--LNTSAAAVLSLIKGAQT----YPNVT 227 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G-~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~ 227 (328)
..|. +.|+.+|.++|.+++.++.+++++.+++|++.+|| |+.... ...+..++.....+.+. .++..
T Consensus 159 ~~~~------~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (342)
T 2hrz_A 159 TTPL------TSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIR 232 (342)
T ss_dssp CCCS------SHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCE
T ss_pred CCCc------chHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccc
Confidence 6653 67999999999999999988889999999999998 654221 12344556666666631 13455
Q ss_pred ccceeHHHHHHHHHHhhcCCC----CCCcEEEecCccCHHHHHHHHHHhCCCCC--CCCCCCCCC----CCCCceecchH
Q 020266 228 FGWVNVKDVANAHIQAFEVPS----ANGRYCLVERVSHYSEIVNIIRELYPAFQ--LPEKCADDK----PHVPTYQVLKE 297 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~----~~g~~~~~~~~~~~~el~~~i~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~ 297 (328)
++++|++|+|++++.++..+. .+++||++++.+|+.|+++.+.+.+|... .....+... .......+|++
T Consensus 233 ~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 312 (342)
T 2hrz_A 233 HWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAPGFEAK 312 (342)
T ss_dssp EEEECHHHHHHHHHHHHHSCHHHHCSCCEEECCCEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSCCCBCCH
T ss_pred eeeEehHHHHHHHHHHHhccccccCCccEEEcCCCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccccccChH
Confidence 678999999999999998753 34589998778999999999999887431 111111100 00112357999
Q ss_pred HHHhcCCc-cccHHHHHHHHHHHHH
Q 020266 298 KVKNLGIE-FIPVEVSLKETIESLK 321 (328)
Q Consensus 298 k~~~lg~~-~~~~~~~l~~~~~~~~ 321 (328)
|+++|||+ .++++++|+++++||+
T Consensus 313 k~~~lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 313 RARELGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp HHHHTTCCCCSSHHHHHHHHHHHHS
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHhc
Confidence 99449999 6899999999999997
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=319.19 Aligned_cols=310 Identities=19% Similarity=0.223 Sum_probs=225.9
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh-hhhhhhccCCCCcEEEEEccCCCcCchHHhhC--C
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-TRHLLALDGASERLQLFKANLLEEGSFDSIVD--G 81 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~ 81 (328)
+.+++|+|||||||||||++|+++|+++|++|++++|+...... ...+... ...+++++.+|++|++++.++++ +
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~~ 84 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL--TKHHIPFYEVDLCDRKGLEKVFKEYK 84 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHH--HTSCCCEEECCTTCHHHHHHHHHHSC
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhc--cCCceEEEEcCCCCHHHHHHHHHhCC
Confidence 34567899999999999999999999999999999997654321 1111111 12468899999999999999888 8
Q ss_pred ccEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020266 82 CDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (328)
Q Consensus 82 ~d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 160 (328)
+|+|||+||..... ........+++|+.++.+++++|++. ++++||++||.+ +|+.........+++|+.+..|
T Consensus 85 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~iV~~SS~~-vyg~~~~~~~~~~~~E~~~~~p--- 159 (699)
T 1z45_A 85 IDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSAT-VYGDATRFPNMIPIPEECPLGP--- 159 (699)
T ss_dssp CCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGG-GGCCGGGSTTCCSBCTTSCCCC---
T ss_pred CCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECcHH-HhCCCccccccCCccccCCCCC---
Confidence 99999999975321 11122367899999999999999987 788999999976 4542211112246677766554
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHh--cCccEEEEcCCcccCCCCCCC--------CcchHHHHHHHHhCC--C--CC---
Q 020266 161 KQSELWYPLSKTLAEDAAWKFAKE--KSIDLVTINPAMVIGPLLQPT--------LNTSAAAVLSLIKGA--Q--TY--- 223 (328)
Q Consensus 161 ~~~~~~Y~~sK~~~E~~~~~~~~~--~~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~--~--~~--- 223 (328)
.+.|+.+|.++|.+++.++.+ .+++++++||+++|||..... ...+..++.+...+. + ++
T Consensus 160 ---~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 236 (699)
T 1z45_A 160 ---TNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDD 236 (699)
T ss_dssp ---CSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC---
T ss_pred ---CChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCc
Confidence 367999999999999999877 699999999999999853211 122344555555442 2 22
Q ss_pred -----CCCCccceeHHHHHHHHHHhhcCC------CC-CCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCC-CCCCC
Q 020266 224 -----PNVTFGWVNVKDVANAHIQAFEVP------SA-NGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCAD-DKPHV 289 (328)
Q Consensus 224 -----~~~~~~~v~v~D~a~~~~~~~~~~------~~-~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~-~~~~~ 289 (328)
+++.++|+|++|+|++++.++++. .. +++||+++ +.+|+.|+++.+++.++.. .+..... .....
T Consensus 237 ~~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~~~~~ 315 (699)
T 1z45_A 237 YDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGID-LPYKVTGRRAGDV 315 (699)
T ss_dssp ---CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCC-CCC---------C
T ss_pred ccCCCCCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCC-CCceecCCCCCcc
Confidence 356789999999999999998642 11 34899975 7899999999999998743 2222111 11223
Q ss_pred CceecchHHH-HhcCCc-cccHHHHHHHHHHHHHHcCC
Q 020266 290 PTYQVLKEKV-KNLGIE-FIPVEVSLKETIESLKEKGF 325 (328)
Q Consensus 290 ~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~~ 325 (328)
..+.+|++|+ +.|||+ .++++++|+++++|++++..
T Consensus 316 ~~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~ 353 (699)
T 1z45_A 316 LNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPF 353 (699)
T ss_dssp CCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred ccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 4577899999 889999 78999999999999988754
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-41 Score=295.03 Aligned_cols=281 Identities=16% Similarity=0.112 Sum_probs=191.6
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--ccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vi 86 (328)
+|+|||||||||||++++++|+++|++|++++|+... ++ ++.+|++|++++.+++++ +|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--------------~~--~~~~Dl~d~~~~~~~~~~~~~d~vi 65 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR--------------PK--FEQVNLLDSNAVHHIIHDFQPHVIV 65 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----------------------------------CHHHHHHHCCSEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC--------------CC--eEEecCCCHHHHHHHHHhhCCCEEE
Confidence 5789999999999999999999999999999986543 12 678999999999998874 89999
Q ss_pred EccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
|+||..... ....+...+++|+.++.+++++|.+. +. +|||+||.+++. . ...+++|+++..|. +
T Consensus 66 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~~-~-----~~~~~~E~~~~~~~------~ 131 (315)
T 2ydy_A 66 HCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV-GA-FLIYISSDYVFD-G-----TNPPYREEDIPAPL------N 131 (315)
T ss_dssp ECC-------------------CHHHHHHHHHHHHH-TC-EEEEEEEGGGSC-S-----SSCSBCTTSCCCCC------S
T ss_pred ECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchHHHcC-C-----CCCCCCCCCCCCCc------C
Confidence 999974322 23344578999999999999999987 55 899999976543 2 24568888776653 6
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHH-hCCC--CCCCCCccceeHHHHHHHHHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI-KGAQ--TYPNVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~v~v~D~a~~~~~ 242 (328)
.|+.+|.++|.+++.+ +++++++||+.||||........+..++.... .+.+ ..+++.++|+|++|+|++++.
T Consensus 132 ~Y~~sK~~~e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 207 (315)
T 2ydy_A 132 LYGKTKLDGEKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQ 207 (315)
T ss_dssp HHHHHHHHHHHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEECSSBBCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeeccCceECcEEHHHHHHHHHH
Confidence 7999999999999876 46789999999999976521122333444454 4543 236778899999999999999
Q ss_pred hhcCC----CCCCcEEEec-CccCHHHHHHHHHHhCCCCCC---CCCC-CC-CCCCCCceecchHHHHhcCCc-cccHHH
Q 020266 243 AFEVP----SANGRYCLVE-RVSHYSEIVNIIRELYPAFQL---PEKC-AD-DKPHVPTYQVLKEKVKNLGIE-FIPVEV 311 (328)
Q Consensus 243 ~~~~~----~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~---~~~~-~~-~~~~~~~~~~~~~k~~~lg~~-~~~~~~ 311 (328)
++.++ ..+++||+++ +.+|+.|+++.+.+.+|.... +... .. .........+|++|++++||+ .+++++
T Consensus 208 ~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~G~~p~~~~~~ 287 (315)
T 2ydy_A 208 LAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIGQRTPFRI 287 (315)
T ss_dssp HHHHHHTCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHTTCCCCCCHHH
T ss_pred HHHhhccccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhcCCCCCCCHHH
Confidence 98753 3456999986 789999999999999985321 1110 10 111224567899999444998 889999
Q ss_pred HHHHHHHHHHHc
Q 020266 312 SLKETIESLKEK 323 (328)
Q Consensus 312 ~l~~~~~~~~~~ 323 (328)
+|+++++||+++
T Consensus 288 ~l~~~~~~~~~~ 299 (315)
T 2ydy_A 288 GIKESLWPFLID 299 (315)
T ss_dssp HHHHHHGGGCC-
T ss_pred HHHHHHHHHccc
Confidence 999999999765
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=285.06 Aligned_cols=263 Identities=20% Similarity=0.195 Sum_probs=203.6
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||+|||||| ||||++|+++|+++|++|++++|++.+...+.. .+++++.+|++|.+ ++++|+|||+
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~-----~~~~d~vi~~ 70 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS-----LDGVTHLLIS 70 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC-----CTTCCEEEEC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc-----cCCCCEEEEC
Confidence 578999998 999999999999999999999998766544322 46899999999855 6789999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcC-CCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
|+..... + ..+.++++++++. .++++|||+||.+ +|+.. ...+++|+++..|. +.|
T Consensus 71 a~~~~~~--~----------~~~~~l~~a~~~~~~~~~~~v~~Ss~~-vyg~~----~~~~~~E~~~~~p~------~~Y 127 (286)
T 3ius_A 71 TAPDSGG--D----------PVLAALGDQIAARAAQFRWVGYLSTTA-VYGDH----DGAWVDETTPLTPT------AAR 127 (286)
T ss_dssp CCCBTTB--C----------HHHHHHHHHHHHTGGGCSEEEEEEEGG-GGCCC----TTCEECTTSCCCCC------SHH
T ss_pred CCccccc--c----------HHHHHHHHHHHhhcCCceEEEEeecce-ecCCC----CCCCcCCCCCCCCC------CHH
Confidence 9874331 1 1257888988883 2778999999975 55432 34678999887764 679
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC-CCCCccceeHHHHHHHHHHhh
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY-PNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~v~v~D~a~~~~~~~ 244 (328)
+.+|.++|.+++.+ .+++++++||+.+|||+.... .++..+.+ .. +++.++|+|++|+|++++.++
T Consensus 128 ~~sK~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 196 (286)
T 3ius_A 128 GRWRVMAEQQWQAV---PNLPLHVFRLAGIYGPGRGPF--------SKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAASM 196 (286)
T ss_dssp HHHHHHHHHHHHHS---TTCCEEEEEECEEEBTTBSSS--------TTSSSSCCCEEECTTCCBCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---cCCCEEEEeccceECCCchHH--------HHHhcCCccccCCCCcccceEEHHHHHHHHHHHH
Confidence 99999999999887 589999999999999975432 22334442 12 357889999999999999999
Q ss_pred cCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCC---CCCCCCC-----CCCCceecchHHH-HhcCCc-cc-cHHHH
Q 020266 245 EVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLP---EKCADDK-----PHVPTYQVLKEKV-KNLGIE-FI-PVEVS 312 (328)
Q Consensus 245 ~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~k~-~~lg~~-~~-~~~~~ 312 (328)
+++..+++||+++ +.+|+.|+++.+.+.+|....+ ....... .......+|++|+ +.|||+ .+ +++++
T Consensus 197 ~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~~e~ 276 (286)
T 3ius_A 197 ARPDPGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYRVG 276 (286)
T ss_dssp HSCCTTCEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSSHHHH
T ss_pred hCCCCCCEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCCHHHH
Confidence 9887556999986 7899999999999998853211 1111100 1124667899999 779999 65 79999
Q ss_pred HHHHHHH
Q 020266 313 LKETIES 319 (328)
Q Consensus 313 l~~~~~~ 319 (328)
|+++++.
T Consensus 277 l~~~~~~ 283 (286)
T 3ius_A 277 LEALQAD 283 (286)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999874
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=288.40 Aligned_cols=268 Identities=13% Similarity=0.033 Sum_probs=212.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 86 (328)
.|+|||||||||||++++++|+++|++|++++|+ .+|++|++++.++++ ++|+||
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~Dl~d~~~~~~~~~~~~~d~vi 68 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITNVLAVNKFFNEKKPNVVI 68 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-----------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred cceEEEECCCChHHHHHHHHHHhCCCeEEeccCc-----------------------cCCCCCHHHHHHHHHhcCCCEEE
Confidence 6899999999999999999999999999999986 179999999999888 799999
Q ss_pred EccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
|+|+..... ....+...+++|+.++.+++++|++. ++ +|||+||.++ |+.. ...+++|+++..|. +
T Consensus 69 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~-~iv~~SS~~v-~~~~----~~~~~~E~~~~~~~------~ 135 (292)
T 1vl0_A 69 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-GA-EIVQISTDYV-FDGE----AKEPITEFDEVNPQ------S 135 (292)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGG-SCSC----CSSCBCTTSCCCCC------S
T ss_pred ECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEechHHe-ECCC----CCCCCCCCCCCCCc------c
Confidence 999974321 11234578999999999999999997 66 9999999764 4322 24578888876653 6
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHh
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQA 243 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~v~D~a~~~~~~ 243 (328)
.|+.+|.++|.+++.++ .+++++||+.+||| .. ..+..++.....+.+ ..+++.++|+|++|+|++++.+
T Consensus 136 ~Y~~sK~~~E~~~~~~~----~~~~~lR~~~v~G~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~ 207 (292)
T 1vl0_A 136 AYGKTKLEGENFVKALN----PKYYIVRTAWLYGD-GN---NFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKV 207 (292)
T ss_dssp HHHHHHHHHHHHHHHHC----SSEEEEEECSEESS-SS---CHHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhC----CCeEEEeeeeeeCC-Cc---ChHHHHHHHHhcCCcEEeecCeeeCCccHHHHHHHHHHH
Confidence 79999999999998864 47999999999999 22 334455555666653 3467788999999999999999
Q ss_pred hcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC----CCCCCCC-CCCCCCceecchHHH-HhcCCccccHHHHHHHH
Q 020266 244 FEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ----LPEKCAD-DKPHVPTYQVLKEKV-KNLGIEFIPVEVSLKET 316 (328)
Q Consensus 244 ~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~k~-~~lg~~~~~~~~~l~~~ 316 (328)
+.++ .+++||+++ +.+|+.|+++.+.+.+|... ++..... .......+.+|++|+ +.|||++.+++++|+++
T Consensus 208 ~~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~l~~~ 286 (292)
T 1vl0_A 208 IDEK-NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITREWKESLKEY 286 (292)
T ss_dssp HHHT-CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHH
T ss_pred HhcC-CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCCCHHHHHHHH
Confidence 9876 556999876 78999999999999987431 1211111 112234577999999 77999955999999999
Q ss_pred HHHHH
Q 020266 317 IESLK 321 (328)
Q Consensus 317 ~~~~~ 321 (328)
++||+
T Consensus 287 ~~~~~ 291 (292)
T 1vl0_A 287 IDLLQ 291 (292)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99985
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=282.62 Aligned_cols=294 Identities=15% Similarity=0.117 Sum_probs=222.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-----CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-----YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG-- 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 81 (328)
+|+|||||||||||++++++|+++| ++|++++|+...... ...+++++.+|++|++++.+++++
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~---------~~~~~~~~~~Dl~d~~~~~~~~~~~~ 71 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWH---------EDNPINYVQCDISDPDDSQAKLSPLT 71 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCC---------CSSCCEEEECCTTSHHHHHHHHTTCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCcccc---------ccCceEEEEeecCCHHHHHHHHhcCC
Confidence 3689999999999999999999999 999999998665320 134789999999999999999997
Q ss_pred -ccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEE-------EecchhhhccCCCCCCCCccccCC
Q 020266 82 -CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVV-------LTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 82 -~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v-------~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
+|+|||+|+... ......+++|+.++.+++++|++.+ ++++|| |+||.+ +||... ....+++|+
T Consensus 72 ~~d~vih~a~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~-vyg~~~--~~~~~~~E~ 144 (364)
T 2v6g_A 72 DVTHVFYVTWANR----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFE-SYGKIE--SHDPPYTED 144 (364)
T ss_dssp TCCEEEECCCCCC----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGG-GTTTSC--CCCSSBCTT
T ss_pred CCCEEEECCCCCc----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechh-hccccc--cCCCCCCcc
Confidence 999999999753 2345788999999999999999862 578897 799975 454321 123577888
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhcC-ccEEEEcCCcccCCCCCCCCcchH-HHHHHHH---hCCC--CCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS-IDLVTINPAMVIGPLLQPTLNTSA-AAVLSLI---KGAQ--TYPN 225 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~---~~~~--~~~~ 225 (328)
++..+. .+.| ..+|.+++.++++++ ++++++||+.+|||+.......+. .++.+.+ .+.+ ..++
T Consensus 145 ~~~~~~-----~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 215 (364)
T 2v6g_A 145 LPRLKY-----MNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGC 215 (364)
T ss_dssp SCCCSS-----CCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSC
T ss_pred ccCCcc-----chhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCC
Confidence 776542 2457 458999999887777 999999999999998654333222 2233333 5553 2332
Q ss_pred -----CCccceeHHHHHHHHHHhhcCCCCCC-cEEEec-CccCHHHHHHHHHHhCCCC------CCCCCC----------
Q 020266 226 -----VTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE-RVSHYSEIVNIIRELYPAF------QLPEKC---------- 282 (328)
Q Consensus 226 -----~~~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~-~~~~~~el~~~i~~~~~~~------~~~~~~---------- 282 (328)
...+++|++|+|++++.+++++...| +||+++ +.+|+.|+++.+++.+|.. .+|.+.
T Consensus 216 ~~~~~~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~ 295 (364)
T 2v6g_A 216 KAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPV 295 (364)
T ss_dssp HHHHHSCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHH
Confidence 34788999999999999998875445 999986 6799999999999998743 122110
Q ss_pred -------CCCCCC---C------------Cc-eecchHHHHhcCCc-cccHHHHHHHHHHHHHHcCCCC
Q 020266 283 -------ADDKPH---V------------PT-YQVLKEKVKNLGIE-FIPVEVSLKETIESLKEKGFVD 327 (328)
Q Consensus 283 -------~~~~~~---~------------~~-~~~~~~k~~~lg~~-~~~~~~~l~~~~~~~~~~~~~~ 327 (328)
....+. . .. +.+|++|+++|||+ .++++++++++++||++++.+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~e~l~~~~~~~~~~g~lp 364 (364)
T 2v6g_A 296 WEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP 364 (364)
T ss_dssp HHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 000010 0 33 57899999449999 8999999999999999998875
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=274.80 Aligned_cols=272 Identities=21% Similarity=0.210 Sum_probs=196.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|||||||||||||++|+++|+++||+|+++.|++.+.. +.+| +...+.++++|+|||+|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~-----------------~~~~----~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR-----------------ITWD----ELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE-----------------EEHH----HHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe-----------------eecc----hhhHhhccCCCEEEEec
Confidence 57999999999999999999999999999999764321 1122 12234567899999999
Q ss_pred CCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 90 SPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 90 ~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
+.... +........++.|+.+|.+|++++.... +..+||+.||++ +||.. ...+.+|+++..+.
T Consensus 60 ~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~-vyg~~----~~~~~~E~~p~~~~----- 129 (298)
T 4b4o_A 60 GENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVA-YYQPS----LTAEYDEDSPGGDF----- 129 (298)
T ss_dssp CCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGG-GSCCC----SSCCBCTTCCCSCS-----
T ss_pred cCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeee-eecCC----CCCcccccCCcccc-----
Confidence 85211 1122334678899999999999998762 344688889965 56432 45677888776653
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC-C--CCCCCccceeHHHHHHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-T--YPNVTFGWVNVKDVANAH 240 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~v~v~D~a~~~ 240 (328)
+.|+..|...|... .....+++++++||+.||||+. ..+..++.....+.. . .+++.++|||++|+|+++
T Consensus 130 -~~~~~~~~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~----~~~~~~~~~~~~~~~~~~g~g~~~~~~ihv~Dva~a~ 202 (298)
T 4b4o_A 130 -DFFSNLVTKWEAAA--RLPGDSTRQVVVRSGVVLGRGG----GAMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGIL 202 (298)
T ss_dssp -SHHHHHHHHHHHHH--CCSSSSSEEEEEEECEEECTTS----HHHHHHHHHHHTTCCCCBTTSCSBCCEEEHHHHHHHH
T ss_pred -chhHHHHHHHHHHH--HhhccCCceeeeeeeeEEcCCC----CchhHHHHHHhcCCcceecccCceeecCcHHHHHHHH
Confidence 55777777766543 2345689999999999999973 223344444445542 2 257899999999999999
Q ss_pred HHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC---CCCCCCCC-------CCCCCceecchHHHHhcCCc--cc
Q 020266 241 IQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ---LPEKCADD-------KPHVPTYQVLKEKVKNLGIE--FI 307 (328)
Q Consensus 241 ~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~k~~~lg~~--~~ 307 (328)
..+++++...|+||+++ +++|++|+++.+++.++... +|.+.... ........++++|++++||+ .+
T Consensus 203 ~~~~~~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~pvP~~~~~~~~g~~~~~~~l~~~rv~~~kl~~~Gf~f~yp 282 (298)
T 4b4o_A 203 THALEANHVHGVLNGVAPSSATNAEFAQTFGAALGRRAFIPLPSAVVQAVFGRQRAIMLLEGQKVIPRRTLATGYQYSFP 282 (298)
T ss_dssp HHHHHCTTCCEEEEESCSCCCBHHHHHHHHHHHHTCCCCCCBCHHHHHHHHCHHHHHHHHCCCCBCCHHHHHTTCCCSCC
T ss_pred HHHHhCCCCCCeEEEECCCccCHHHHHHHHHHHhCcCCcccCCHHHHHHHhcchhHHHhhCCCEEcHHHHHHCCCCCCCC
Confidence 99999988888999986 88999999999999998532 22111000 00012345788999889998 45
Q ss_pred cHHHHHHHHHHH
Q 020266 308 PVEVSLKETIES 319 (328)
Q Consensus 308 ~~~~~l~~~~~~ 319 (328)
+++++|+++++.
T Consensus 283 ~l~~al~~l~~~ 294 (298)
T 4b4o_A 283 ELGAALKEIAEN 294 (298)
T ss_dssp SHHHHHHHHHHC
T ss_pred CHHHHHHHHHHh
Confidence 799999998874
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=283.82 Aligned_cols=309 Identities=12% Similarity=0.077 Sum_probs=219.7
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhh---cc-------CCCCcEEEEEccCCCcC
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA---LD-------GASERLQLFKANLLEEG 73 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~-------~~~~~~~~~~~Dl~~~~ 73 (328)
+..+++|+|||||||||||++|+++|++.|++|++++|+......+.++.. .. ....++.++.+|++|++
T Consensus 64 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 143 (427)
T 4f6c_A 64 LSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD 143 (427)
T ss_dssp SCCCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred CCCCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence 344568899999999999999999999999999999998874333222211 10 01257999999999988
Q ss_pred chHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 74 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
.+. .+.++|+|||+||..... .++...+++|+.++.+++++|.+ +.++|||+||.++ +..........+++|++
T Consensus 144 ~l~-~~~~~d~Vih~A~~~~~~--~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~ 217 (427)
T 4f6c_A 144 DVV-LPENMDTIIHAGARTDHF--GDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDTEDVTFSEAD 217 (427)
T ss_dssp CCC-CSSCCSEEEECCCCC---------CHHHHHHHHHHHHHHHHHH--TTCEEEEEEEGGG-GSEECSSCSCCEECTTC
T ss_pred cCC-CcCCCCEEEECCcccCCC--CCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEECchHh-CCCccCCCCCccccccc
Confidence 888 777999999999986432 33458899999999999999998 4689999999876 32122223457888987
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC------cchHHHHHHHHhCCCCC---C
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL------NTSAAAVLSLIKGAQTY---P 224 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------~~~~~~~~~~~~~~~~~---~ 224 (328)
+..+. .+.+.|+.+|+++|.+++.+++ .|++++++||++||||...... ..+..++.....+.+.. +
T Consensus 218 ~~~~~---~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (427)
T 4f6c_A 218 VYKGQ---LLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMA 293 (427)
T ss_dssp SCSSC---CCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHH
T ss_pred cccCC---CCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCccc
Confidence 74432 1357799999999999999864 6999999999999999765432 22556666666666322 4
Q ss_pred CCCccceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCC--CCC-----CCC---------C
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPE--KCA-----DDK---------P 287 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~--~~~-----~~~---------~ 287 (328)
++.++|++++|+|++++.++.++..+++||+++ +.+++.|+++.+.+ ++...++. |.. ... .
T Consensus 294 ~~~~~~v~v~DvA~ai~~~~~~~~~g~~~~l~~~~~~s~~el~~~i~~-~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (427)
T 4f6c_A 294 EMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKR-KEIELVSDESFNEILQKQDMYETIGLTSVDR 372 (427)
T ss_dssp TCEECCEEHHHHHHHHHHHTTSCCCCSEEEESCSCCEEHHHHHHHHHS-SCCEEECHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cceEEEeeHHHHHHHHHHHHcCCCCCCEEEecCCCCCcHHHHHHHHHH-cCCcccCHHHHHHHHHhcCchhhhhhhhccc
Confidence 788999999999999999999876555999975 88999999999998 44111110 000 000 0
Q ss_pred CCCceecchHHH----HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 288 HVPTYQVLKEKV----KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 288 ~~~~~~~~~~k~----~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
......+|+++. +++||. +..-++.+++++++++..
T Consensus 373 ~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~ 413 (427)
T 4f6c_A 373 EQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTI 413 (427)
T ss_dssp TSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHH
T ss_pred cCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 111344555443 567998 444456899999888663
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=255.90 Aligned_cols=220 Identities=25% Similarity=0.297 Sum_probs=173.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||+|||||||||||++++++|+++|++|++++|++++...+ ..+++++.+|++|++++.++++++|+|||+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ 74 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE---------NEHLKVKKADVSSLDEVCEVCKGADAVISA 74 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC---------CTTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc---------cCceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence 57899999999999999999999999999999986654321 257999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhh
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 168 (328)
|+.... . ...+++|+.++.++++++++. ++++|||+||.+++++.+ ....|+.+..| .+.|+
T Consensus 75 a~~~~~----~-~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~~~------~~~~~~~~~~p------~~~Y~ 136 (227)
T 3dhn_A 75 FNPGWN----N-PDIYDETIKVYLTIIDGVKKA-GVNRFLMVGGAGSLFIAP------GLRLMDSGEVP------ENILP 136 (227)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHHHT-TCSEEEEECCSTTSEEET------TEEGGGTTCSC------GGGHH
T ss_pred CcCCCC----C-hhHHHHHHHHHHHHHHHHHHh-CCCEEEEeCChhhccCCC------CCccccCCcch------HHHHH
Confidence 986422 1 147889999999999999998 788999999987676432 22344444444 36699
Q ss_pred hhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 169 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.+|..+|.+++.++++++++++++||+.+|||+....... ..+. +......++|+|++|+|++++.+++++
T Consensus 137 ~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~Dva~ai~~~l~~~ 208 (227)
T 3dhn_A 137 GVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRYR--------LGKDDMIVDIVGNSHISVEDYAAAMIDELEHP 208 (227)
T ss_dssp HHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCCCCCE--------EESSBCCCCTTSCCEEEHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCccEEEEeCCcccCCCcccccee--------ecCCCcccCCCCCcEEeHHHHHHHHHHHHhCc
Confidence 9999999999999878899999999999999976432211 1122 233333489999999999999999998
Q ss_pred CCCC-cEEEec-CccCHH
Q 020266 248 SANG-RYCLVE-RVSHYS 263 (328)
Q Consensus 248 ~~~g-~~~~~~-~~~~~~ 263 (328)
...| +|++++ ++.++.
T Consensus 209 ~~~g~~~~~~~~~~~~~~ 226 (227)
T 3dhn_A 209 KHHQERFTIGYLEHHHHH 226 (227)
T ss_dssp CCCSEEEEEECCSCCC--
T ss_pred cccCcEEEEEeehhcccC
Confidence 7766 999886 666654
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=283.61 Aligned_cols=276 Identities=14% Similarity=0.125 Sum_probs=199.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+|+|||||||||||++|++.|+++|++|++++|+..+.. .+.+|+.+. +.++++++|+|||+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~----------------~v~~d~~~~--~~~~l~~~D~Vih~ 208 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG----------------KRFWDPLNP--ASDLLDGADVLVHL 208 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT----------------CEECCTTSC--CTTTTTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc----------------ceeecccch--hHHhcCCCCEEEEC
Confidence 789999999999999999999999999999999876531 156788743 45677899999999
Q ss_pred cCCCCC--CCCCcchhhhhHHHHHHHHHHHH-HhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 89 ASPFYH--DAKDPQVELLDPAVKGTLNVLNS-CAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 89 a~~~~~--~~~~~~~~~~~~N~~~~~~l~~~-~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
|+.... .........+++|+.++.+|+++ ++.. ++++|||+||++ +||.. ....+++|+.+. + .+
T Consensus 209 A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~-~~~r~V~~SS~~-vyg~~---~~~~~~~E~~~~-~------~~ 276 (516)
T 3oh8_A 209 AGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAEST-QCTTMISASAVG-FYGHD---RGDEILTEESES-G------DD 276 (516)
T ss_dssp CCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCS-SCCEEEEEEEGG-GGCSE---EEEEEECTTSCC-C------SS
T ss_pred CCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEeCcce-EecCC---CCCCccCCCCCC-C------cC
Confidence 997432 22334457889999999999999 5554 888999999976 55411 134578888765 2 25
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC-CC--CCCCccceeHHHHHHHHHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TY--PNVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~v~v~D~a~~~~~ 242 (328)
.|+.+|...|.++..+ ...|++++++||+.+|||+. +.+..++..+..+.. .+ +++.++|+|++|+|++++.
T Consensus 277 ~y~~~~~~~E~~~~~~-~~~gi~~~ilRp~~v~Gp~~----~~~~~~~~~~~~g~~~~~g~g~~~~~~i~v~Dva~ai~~ 351 (516)
T 3oh8_A 277 FLAEVCRDWEHATAPA-SDAGKRVAFIRTGVALSGRG----GMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYR 351 (516)
T ss_dssp HHHHHHHHHHHTTHHH-HHTTCEEEEEEECEEEBTTB----SHHHHHHHTTC---CCCCTTSCCEECEEEHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HhCCCCEEEEEeeEEECCCC----ChHHHHHHHHHhCCCcccCCCCceEceEeHHHHHHHHHH
Confidence 6999999999886544 55799999999999999973 223333333333332 22 4678899999999999999
Q ss_pred hhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCC---CCCCCCCCC---CC-----CCCceecchHHHHhcCCc-cc-c
Q 020266 243 AFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF---QLPEKCADD---KP-----HVPTYQVLKEKVKNLGIE-FI-P 308 (328)
Q Consensus 243 ~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~---~~~~~~~~~---~~-----~~~~~~~~~~k~~~lg~~-~~-~ 308 (328)
++.++...|+||+++ +.+|+.|+++.+++.+|.. ++|.+.... .. ......++++|++++||+ .+ +
T Consensus 352 ~l~~~~~~g~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~~lG~~~~~~~ 431 (516)
T 3oh8_A 352 AIVDAQISGPINAVAPNPVSNADMTKILATSMHRPAFIQIPSLGPKILLGSQGAEELALASQRTAPAALENLSHTFRYTD 431 (516)
T ss_dssp HHHCTTCCEEEEESCSCCEEHHHHHHHTTC---------------------CCGGGGGGCEEEECCHHHHHTTCCCSCSS
T ss_pred HHhCcccCCcEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhCCchhHHHhhcCCeechHHHHHCCCCCCCCC
Confidence 999877778999986 8899999999999988743 222222111 11 123456789999889999 55 5
Q ss_pred HHHHHHHHHHH
Q 020266 309 VEVSLKETIES 319 (328)
Q Consensus 309 ~~~~l~~~~~~ 319 (328)
++++|++++++
T Consensus 432 l~e~l~~~l~~ 442 (516)
T 3oh8_A 432 IGAAIAHELGY 442 (516)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCc
Confidence 99999999864
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=276.00 Aligned_cols=257 Identities=20% Similarity=0.153 Sum_probs=194.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHC---CCeEEEEecCCCChhhhhhhhhccCC-------------CCcEEEEEccCC
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSR---GYTVKASVRDPNDPKKTRHLLALDGA-------------SERLQLFKANLL 70 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~ 70 (328)
.++|+|||||||||||++|+++|+++ |++|++++|+........++...... ..+++++.+|++
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 150 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS 150 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence 45899999999999999999999998 89999999987765443333222211 258999999998
Q ss_pred C------cCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCC
Q 020266 71 E------EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 71 ~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
+ .+.+.++++++|+|||+||.... .++...+++|+.++.+++++|.+. ++++|||+||.+ +|+..
T Consensus 151 ~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~---~~~~~~~~~Nv~gt~~ll~aa~~~-~~~~~V~iSS~~-v~~~~---- 221 (478)
T 4dqv_A 151 EPDLGLDQPMWRRLAETVDLIVDSAAMVNA---FPYHELFGPNVAGTAELIRIALTT-KLKPFTYVSTAD-VGAAI---- 221 (478)
T ss_dssp SGGGGCCHHHHHHHHHHCCEEEECCSSCSB---SSCCEEHHHHHHHHHHHHHHHTSS-SCCCEEEEEEGG-GGTTS----
T ss_pred CcccCCCHHHHHHHHcCCCEEEECccccCC---cCHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeehh-hcCcc----
Confidence 4 45688888899999999998655 344578999999999999999997 888999999976 45322
Q ss_pred CCccccCCCCCCcccc-----ccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCC----CCcchHHHHHH
Q 020266 145 PDVVVDETWFSDPEVC-----KQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQP----TLNTSAAAVLS 215 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~-----~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~----~~~~~~~~~~~ 215 (328)
...+++|+.+..|..+ ....+.|+.||+++|.+++.++++.+++++++||++|||+.... ....+..++..
T Consensus 222 ~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~ 301 (478)
T 4dqv_A 222 EPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLS 301 (478)
T ss_dssp CTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHH
T ss_pred CCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHH
Confidence 3356677765443211 11225599999999999999998889999999999999985421 12234444444
Q ss_pred HHh-CC-CCC----------CCCCccceeHHHHHHHHHHhhcC----CCC-CCcEEEec-Cc--cCHHHHHHHHHHh
Q 020266 216 LIK-GA-QTY----------PNVTFGWVNVKDVANAHIQAFEV----PSA-NGRYCLVE-RV--SHYSEIVNIIREL 272 (328)
Q Consensus 216 ~~~-~~-~~~----------~~~~~~~v~v~D~a~~~~~~~~~----~~~-~g~~~~~~-~~--~~~~el~~~i~~~ 272 (328)
... |. |.. +++.++++|++|+|++++.++.+ +.. +++||+++ +. +|+.|+++.+.+.
T Consensus 302 ~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~ 378 (478)
T 4dqv_A 302 LMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA 378 (478)
T ss_dssp HHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT
T ss_pred HHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc
Confidence 333 32 211 15678999999999999999875 333 34999986 55 9999999999996
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=283.74 Aligned_cols=304 Identities=12% Similarity=0.082 Sum_probs=218.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhc----------cCCCCcEEEEEccCCCcCchHH
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLAL----------DGASERLQLFKANLLEEGSFDS 77 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~~~Dl~~~~~~~~ 77 (328)
.+|+|||||||||||++|+++|.+.|++|++++|+..+.....++... .....+++++.+|+++++.+.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~- 227 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV- 227 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence 468999999999999999999988999999999988743332221110 011358999999999988888
Q ss_pred hhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020266 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (328)
Q Consensus 78 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 157 (328)
...++|+|||+|+..... .++...+++|+.++.+++++|.+ +.++|||+||.++ +..........+++|+++..+
T Consensus 228 ~~~~~D~Vih~Aa~~~~~--~~~~~~~~~Nv~gt~~ll~~a~~--~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~~ 302 (508)
T 4f6l_B 228 LPENMDTIIHAGARTDHF--GDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKG 302 (508)
T ss_dssp CSSCCSEEEECCCC----------CCHHHHHHHHHHHHHHHHT--TTCEEEEEEESCT-TSEECTTCSCCEECTTCSCSS
T ss_pred CccCCCEEEECCceecCC--CCHHHHhhhHHHHHHHHHHHHHh--CCCcEEEeCChhh-ccCCccCCcCccccccccccc
Confidence 777999999999986532 23457889999999999999998 4579999999876 211112234568888877443
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC------cchHHHHHHHHhCCC--CC-CCCCc
Q 020266 158 EVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL------NTSAAAVLSLIKGAQ--TY-PNVTF 228 (328)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------~~~~~~~~~~~~~~~--~~-~~~~~ 228 (328)
. .+.+.|+.+|+.+|.+++.++. .|++++++||+.||||...... ..+..++.....+.. .. +++.+
T Consensus 303 ~---~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~ 378 (508)
T 4f6l_B 303 Q---LLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPV 378 (508)
T ss_dssp B---CCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGSEE
T ss_pred c---cCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCceE
Confidence 2 1457799999999999999864 6999999999999999765431 224556666665552 21 47889
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCC--CCCC---C-----------CCCCCCc
Q 020266 229 GWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLP--EKCA---D-----------DKPHVPT 291 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~--~~~~---~-----------~~~~~~~ 291 (328)
+|+|++|+|++++.++.++..+++||+++ +.+++.|+++.+.+.. ...++ .|.. . .......
T Consensus 379 ~~v~v~DvA~ai~~~~~~~~~~~~~nl~~~~~~s~~el~~~i~~~~-~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~ 457 (508)
T 4f6l_B 379 DFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKE-IELVSDESFNEILQKQDMYETIGLTSVDREQQL 457 (508)
T ss_dssp ECEEHHHHHHHHHHHTTBCCSCSEEEESCSCEEEHHHHHHHHHSSC-CEEECHHHHHHHHHTTCCHHHHHHHHTGGGSEE
T ss_pred EEEcHHHHHHHHHHHHhCCCCCCEEEeCCCCCCCHHHHHHHHHHcC-CcccCHHHHHHHHHhcCCccchhcccccccCcc
Confidence 99999999999999999876566999986 7899999999999765 11111 1100 0 0001123
Q ss_pred eecchHHH----HhcCCc-cccHHHHHHHHHHHHHH
Q 020266 292 YQVLKEKV----KNLGIE-FIPVEVSLKETIESLKE 322 (328)
Q Consensus 292 ~~~~~~k~----~~lg~~-~~~~~~~l~~~~~~~~~ 322 (328)
..+|+++. +++||. +...++.+++++++++.
T Consensus 458 ~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~ 493 (508)
T 4f6l_B 458 AMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKT 493 (508)
T ss_dssp CEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHH
T ss_pred eecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 44555443 667999 55557788888888765
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-36 Score=265.98 Aligned_cols=234 Identities=14% Similarity=0.174 Sum_probs=188.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHC-CC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSR-GY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+++|+|||||||||||++++++|+++ |+ +|++++|++.+...+...+. ..++.++.+|++|++.+.++++++|+
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~~~D~ 94 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYALEGVDI 94 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHHHhcCCE
Confidence 46789999999999999999999999 97 99999998665444333221 25799999999999999999999999
Q ss_pred EEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 85 vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
|||+||..... ........+++|+.|+.+++++|.+. ++++||++||..++. +
T Consensus 95 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~-~v~~~V~~SS~~~~~-------------------------p 148 (344)
T 2gn4_A 95 CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKN-AISQVIALSTDKAAN-------------------------P 148 (344)
T ss_dssp EEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGGGSS-------------------------C
T ss_pred EEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCCccCC-------------------------C
Confidence 99999974311 11223478999999999999999998 889999999975432 1
Q ss_pred CchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CC---CCCCCccceeHHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QT---YPNVTFGWVNVKDV 236 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~v~v~D~ 236 (328)
.+.|+.||.++|.+++.++.+ .+++++++||++||||.. ..+..++.++..|. ++ -++..++|+|++|+
T Consensus 149 ~~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~----~~i~~~~~~~~~g~~~~~i~~~~~~r~~i~v~D~ 224 (344)
T 2gn4_A 149 INLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG----SVVPFFKKLVQNKASEIPITDIRMTRFWITLDEG 224 (344)
T ss_dssp CSHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT----SHHHHHHHHHHHTCCCEEESCTTCEEEEECHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC----CHHHHHHHHHHcCCCceEEeCCCeEEeeEEHHHH
Confidence 255999999999999998764 579999999999999863 23445566666666 32 14667889999999
Q ss_pred HHHHHHhhcCCCCCCcEEEecCccCHHHHHHHHHHhCC
Q 020266 237 ANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYP 274 (328)
Q Consensus 237 a~~~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~~~~~ 274 (328)
|++++.+++++..+.+|++.+..+++.|+++.+.+.++
T Consensus 225 a~~v~~~l~~~~~g~~~~~~~~~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 225 VSFVLKSLKRMHGGEIFVPKIPSMKMTDLAKALAPNTP 262 (344)
T ss_dssp HHHHHHHHHHCCSSCEEEECCCEEEHHHHHHHHCTTCC
T ss_pred HHHHHHHHhhccCCCEEecCCCcEEHHHHHHHHHHhCC
Confidence 99999999876444489988778999999999987654
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=255.01 Aligned_cols=260 Identities=15% Similarity=0.116 Sum_probs=197.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--ccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vih 87 (328)
|+|||||||||||++++++|+ +|++|++++|++... .+ +.+|++|++++.+++++ +|+|||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~-------------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~ 63 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ-------------GG---YKLDLTDFPRLEDFIIKKRPDVIIN 63 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT-------------TC---EECCTTSHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC-------------CC---ceeccCCHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999 589999999986421 12 78999999999998885 999999
Q ss_pred ccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
+||..... ..+.+...+++|+.++.+++++|++. +. +||++||.+++.+. ..+++|+++..|. +.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~iv~~SS~~~~~~~------~~~~~e~~~~~~~------~~ 129 (273)
T 2ggs_A 64 AAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI-DS-YIVHISTDYVFDGE------KGNYKEEDIPNPI------NY 129 (273)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEEEEGGGSCSS------SCSBCTTSCCCCS------SH
T ss_pred CCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEecceeEcCC------CCCcCCCCCCCCC------CH
Confidence 99975421 11234578899999999999999987 55 89999998654421 2367888776553 67
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHhh
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~v~D~a~~~~~~~ 244 (328)
|+.+|.++|.+++. ++++++||+.+||+ ......++.....+.+ ..++ .++++|++|+|++++.++
T Consensus 130 Y~~sK~~~e~~~~~------~~~~~iR~~~v~G~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dva~~i~~~~ 197 (273)
T 2ggs_A 130 YGLSKLLGETFALQ------DDSLIIRTSGIFRN-----KGFPIYVYKTLKEGKTVFAFKG-YYSPISARKLASAILELL 197 (273)
T ss_dssp HHHHHHHHHHHHCC------TTCEEEEECCCBSS-----SSHHHHHHHHHHTTCCEEEESC-EECCCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC------CCeEEEeccccccc-----cHHHHHHHHHHHcCCCEEeecC-CCCceEHHHHHHHHHHHH
Confidence 99999999999865 67899999999983 1223333445555553 2345 789999999999999999
Q ss_pred cCCCCCCcEEEecCccCHHHHHHHHHHhCCCCCC---CCCCC-CCCCCCCceecchHHH-HhcCCcc--ccHHHHH
Q 020266 245 EVPSANGRYCLVERVSHYSEIVNIIRELYPAFQL---PEKCA-DDKPHVPTYQVLKEKV-KNLGIEF--IPVEVSL 313 (328)
Q Consensus 245 ~~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~k~-~~lg~~~--~~~~~~l 313 (328)
.++. .|+||++++.+|++|+++.+.+.+|.... +.+.. ..........+|++|+ +.|||++ .++++++
T Consensus 198 ~~~~-~g~~~i~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 198 ELRK-TGIIHVAGERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp HHTC-CEEEECCCCCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred hcCc-CCeEEECCCcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence 8754 66999888889999999999999985321 11111 1112234577999999 7799983 6888764
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=252.76 Aligned_cols=253 Identities=16% Similarity=0.222 Sum_probs=194.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHC--CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
|+|||||||||||++++++|+++ |++|++++|+..+...+.. .+++++.+|++|++++.++++++|+|||
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~--------~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 72 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD--------QGVEVRHGDYNQPESLQKAFAGVSKLLF 72 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH--------TTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh--------cCCeEEEeccCCHHHHHHHHhcCCEEEE
Confidence 47999999999999999999998 9999999998765443221 3688999999999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
+|+... . . ++|+.++.+++++|++. ++++|||+||.++ +.. ...|
T Consensus 73 ~a~~~~----~---~--~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~~~-~~~------------------------~~~y 117 (287)
T 2jl1_A 73 ISGPHY----D---N--TLLIVQHANVVKAARDA-GVKHIAYTGYAFA-EES------------------------IIPL 117 (287)
T ss_dssp CCCCCS----C---H--HHHHHHHHHHHHHHHHT-TCSEEEEEEETTG-GGC------------------------CSTH
T ss_pred cCCCCc----C---c--hHHHHHHHHHHHHHHHc-CCCEEEEECCCCC-CCC------------------------CCch
Confidence 998521 1 1 57999999999999997 8889999999754 310 0239
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHH-hCCC--CCCCCCccceeHHHHHHHHHHhh
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI-KGAQ--TYPNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~v~v~D~a~~~~~~~ 244 (328)
+.+|..+|.+++. ++++++++||+.++|+... . ++.+.. .+.. ..+++.++|+|++|+|++++.++
T Consensus 118 ~~~K~~~E~~~~~----~~~~~~ilrp~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~ 186 (287)
T 2jl1_A 118 AHVHLATEYAIRT----TNIPYTFLRNALYTDFFVN---E----GLRASTESGAIVTNAGSGIVNSVTRNELALAAATVL 186 (287)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEEEECCBHHHHSS---G----GGHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCCeEEEECCEeccccch---h----hHHHHhhCCceeccCCCCccCccCHHHHHHHHHHHh
Confidence 9999999999853 6899999999998886421 1 122222 3332 23577889999999999999999
Q ss_pred cCCCCCC-cEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCC-----------CCCC--------------CCceecchH
Q 020266 245 EVPSANG-RYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCAD-----------DKPH--------------VPTYQVLKE 297 (328)
Q Consensus 245 ~~~~~~g-~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~-----------~~~~--------------~~~~~~~~~ 297 (328)
.++...| +||+++ +.+|+.|+++.+.+.+|.. .+....+ ..+. ...+..|++
T Consensus 187 ~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (287)
T 2jl1_A 187 TEEGHENKTYNLVSNQPWTFDELAQILSEVSGKK-VVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSD 265 (287)
T ss_dssp TSSSCTTEEEEECCSSCBCHHHHHHHHHHHHSSC-CEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred cCCCCCCcEEEecCCCcCCHHHHHHHHHHHHCCc-ceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCch
Confidence 8765445 899987 6899999999999998743 1111000 0000 013456788
Q ss_pred HH-HhcCCccccHHHHHHHHHH
Q 020266 298 KV-KNLGIEFIPVEVSLKETIE 318 (328)
Q Consensus 298 k~-~~lg~~~~~~~~~l~~~~~ 318 (328)
|+ +.+| .+++++++|+++++
T Consensus 266 ~~~~~lG-~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 266 DLQKLIG-SLTPLKETVKQALK 286 (287)
T ss_dssp HHHHHHS-SCCCHHHHHHHHHT
T ss_pred HHHHHhC-CCCCHHHHHHHHhc
Confidence 99 7799 98899999999875
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=251.18 Aligned_cols=235 Identities=19% Similarity=0.199 Sum_probs=185.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||+|||||||||||++++++|+++|++|++++|+..+.. ..+++++.+|++|++.+.++++++|+|||+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ 70 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA-----------EAHEEIVACDLADAQAVHDLVKDCDGIIHL 70 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC-----------CTTEEECCCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc-----------CCCccEEEccCCCHHHHHHHHcCCCEEEEC
Confidence 468999999999999999999999999999999765421 135788999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhh
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 168 (328)
|+... ...+...+++|+.++.++++++++. ++++|||+||.+++. .. ....+++|+++..|. +.|+
T Consensus 71 a~~~~---~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~-~~---~~~~~~~E~~~~~~~------~~Y~ 136 (267)
T 3ay3_A 71 GGVSV---ERPWNDILQANIIGAYNLYEAARNL-GKPRIVFASSNHTIG-YY---PRTTRIDTEVPRRPD------SLYG 136 (267)
T ss_dssp CSCCS---CCCHHHHHHHTHHHHHHHHHHHHHT-TCCEEEEEEEGGGST-TS---BTTSCBCTTSCCCCC------SHHH
T ss_pred CcCCC---CCCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCHHHhC-CC---CCCCCCCCCCCCCCC------ChHH
Confidence 99752 2344578899999999999999987 788999999976543 21 123578888776653 6799
Q ss_pred hhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC
Q 020266 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 169 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
.+|..+|.+++.++.+++++++++||+.+|+.... +...++|+|++|+|++++.+++++.
T Consensus 137 ~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~~~~--------------------~~~~~~~~~~~dva~~~~~~~~~~~ 196 (267)
T 3ay3_A 137 LSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPKD--------------------ARMMATWLSVDDFMRLMKRAFVAPK 196 (267)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEECBCSSSCCS--------------------HHHHHHBCCHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeceeecCCCCC--------------------CCeeeccccHHHHHHHHHHHHhCCC
Confidence 99999999999998888999999999999842110 1124579999999999999998765
Q ss_pred CC-CcEEEecCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhcCCc-cccHHHHHHHHHH
Q 020266 249 AN-GRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNLGIE-FIPVEVSLKETIE 318 (328)
Q Consensus 249 ~~-g~~~~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~-~~~~~~~l~~~~~ 318 (328)
.. ++|++.++. .....|..+++.+||+ ..+++++++++.+
T Consensus 197 ~~~~~~~~~~~~------------------------------~~~~~d~~~~~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 197 LGCTVVYGASAN------------------------------TESWWDNDKSAFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp CCEEEEEECCSC------------------------------SSCCBCCGGGGGGCCCCCCCGGGGHHHHHH
T ss_pred CCceeEecCCCc------------------------------cccccCHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 43 366664321 0112344555778998 7789999888765
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=247.17 Aligned_cols=214 Identities=17% Similarity=0.214 Sum_probs=176.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|+||+|||||||||||+++++.|+++|++|++++|++.+.. ..+++++.+|++|++++.++++++|+||
T Consensus 1 m~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi 69 (267)
T 3rft_A 1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-----------GPNEECVQCDLADANAVNAMVAGCDGIV 69 (267)
T ss_dssp CCEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-----------CTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-----------CCCCEEEEcCCCCHHHHHHHHcCCCEEE
Confidence 34689999999999999999999999999999999876543 2478999999999999999999999999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
||||.. ..+++...+++|+.|+.++++++++. +.++||++||.+++++.+ ...+++|+.+..+. +.
T Consensus 70 ~~Ag~~---~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~g~~~----~~~~~~e~~~~~~~------~~ 135 (267)
T 3rft_A 70 HLGGIS---VEKPFEQILQGNIIGLYNLYEAARAH-GQPRIVFASSNHTIGYYP----QTERLGPDVPARPD------GL 135 (267)
T ss_dssp ECCSCC---SCCCHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGTTSB----TTSCBCTTSCCCCC------SH
T ss_pred ECCCCc---CcCCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcchHHhCCCC----CCCCCCCCCCCCCC------Ch
Confidence 999984 23456688999999999999999998 788999999987654222 34577888776653 67
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
|+.||.++|.+++.++.++++++++|||+.++|+... +...++|++++|+++++..++..
T Consensus 136 Y~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~~~--------------------~~~~~~~~~~~d~a~~~~~~~~~ 195 (267)
T 3rft_A 136 YGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNN--------------------YRMLSTWFSHDDFVSLIEAVFRA 195 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSCCS--------------------TTHHHHBCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEEeecccCCCCC--------------------CCceeeEEcHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999997422 23345689999999999999998
Q ss_pred CCCCC-cEEEe-cCccCHHHH
Q 020266 247 PSANG-RYCLV-ERVSHYSEI 265 (328)
Q Consensus 247 ~~~~g-~~~~~-~~~~~~~el 265 (328)
+...+ ++++. ++..++.++
T Consensus 196 ~~~~~~~~~~~s~~~~~~~~~ 216 (267)
T 3rft_A 196 PVLGCPVVWGASANDAGWWDN 216 (267)
T ss_dssp SCCCSCEEEECCCCTTCCBCC
T ss_pred CCCCceEEEEeCCCCCCcccC
Confidence 76554 56655 465555554
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=243.38 Aligned_cols=208 Identities=15% Similarity=0.167 Sum_probs=170.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCC-cCchHHhhCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE-EGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~d~vih~ 88 (328)
|+|||||||||||++++++|+++|++|++++|++++...+ .+++++.+|++| ++++.++++++|+|||+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ 70 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY----------NNVKAVHFDVDWTPEEMAKQLHGMDAIINV 70 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC----------TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc----------CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence 4799999999999999999999999999999987554321 479999999999 99999999999999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhh
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 168 (328)
|+.... ..+++|+.++.+++++|++. ++++||++||.+++. ..+..| .++. +.+.|+
T Consensus 71 ag~~~~-------~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~--------~~~~~e-~~~~------~~~~Y~ 127 (219)
T 3dqp_A 71 SGSGGK-------SLLKVDLYGAVKLMQAAEKA-EVKRFILLSTIFSLQ--------PEKWIG-AGFD------ALKDYY 127 (219)
T ss_dssp CCCTTS-------SCCCCCCHHHHHHHHHHHHT-TCCEEEEECCTTTTC--------GGGCCS-HHHH------HTHHHH
T ss_pred CcCCCC-------CcEeEeHHHHHHHHHHHHHh-CCCEEEEECcccccC--------CCcccc-cccc------cccHHH
Confidence 997542 46788999999999999998 788999999975433 123333 1111 246799
Q ss_pred hhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC
Q 020266 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 169 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
.+|.++|.+++ +..+++++++||+.+||+....... .++..+++++++|+|++++.++.++.
T Consensus 128 ~sK~~~e~~~~---~~~~i~~~ilrp~~v~g~~~~~~~~---------------~~~~~~~~i~~~Dva~~i~~~l~~~~ 189 (219)
T 3dqp_A 128 IAKHFADLYLT---KETNLDYTIIQPGALTEEEATGLID---------------INDEVSASNTIGDVADTIKELVMTDH 189 (219)
T ss_dssp HHHHHHHHHHH---HSCCCEEEEEEECSEECSCCCSEEE---------------ESSSCCCCEEHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHH---hccCCcEEEEeCceEecCCCCCccc---------------cCCCcCCcccHHHHHHHHHHHHhCcc
Confidence 99999999987 4579999999999999986432211 23677899999999999999999876
Q ss_pred CCC-cEEEecCccCHHHHHHH
Q 020266 249 ANG-RYCLVERVSHYSEIVNI 268 (328)
Q Consensus 249 ~~g-~~~~~~~~~~~~el~~~ 268 (328)
..| +||++++..+++|+.+.
T Consensus 190 ~~g~~~~i~~g~~~~~e~~~~ 210 (219)
T 3dqp_A 190 SIGKVISMHNGKTAIKEALES 210 (219)
T ss_dssp GTTEEEEEEECSEEHHHHHHT
T ss_pred ccCcEEEeCCCCccHHHHHHH
Confidence 545 89998877999998873
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=242.11 Aligned_cols=217 Identities=20% Similarity=0.216 Sum_probs=170.4
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcE-EEEEccCCCcCchHHhhCCcc
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERL-QLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~d 83 (328)
..+++|+|||||||||||++++++|+++|++|++++|++++...+.. .++ +++.+|++ +.+.+.+.++|
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~--~~~~~~~~~~D 86 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLE--EDFSHAFASID 86 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTT--SCCGGGGTTCS
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccH--HHHHHHHcCCC
Confidence 45678999999999999999999999999999999998776544322 267 89999999 78888999999
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
+|||+||.... ..+...+++|+.++.+++++|++. ++++||++||.+...+ |..+ . +
T Consensus 87 ~vi~~ag~~~~---~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~------------~~~~-~------~ 143 (236)
T 3e8x_A 87 AVVFAAGSGPH---TGADKTILIDLWGAIKTIQEAEKR-GIKRFIMVSSVGTVDP------------DQGP-M------N 143 (236)
T ss_dssp EEEECCCCCTT---SCHHHHHHTTTHHHHHHHHHHHHH-TCCEEEEECCTTCSCG------------GGSC-G------G
T ss_pred EEEECCCCCCC---CCccccchhhHHHHHHHHHHHHHc-CCCEEEEEecCCCCCC------------CCCh-h------h
Confidence 99999997543 345688999999999999999987 7889999999543221 1111 1 2
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHh
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQA 243 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~ 243 (328)
.+.|+.+|.++|.+++ ..+++++++||+.++|+........ ...+...+++++++|+|++++.+
T Consensus 144 ~~~Y~~sK~~~e~~~~----~~gi~~~~lrpg~v~~~~~~~~~~~------------~~~~~~~~~~i~~~Dva~~~~~~ 207 (236)
T 3e8x_A 144 MRHYLVAKRLADDELK----RSSLDYTIVRPGPLSNEESTGKVTV------------SPHFSEITRSITRHDVAKVIAEL 207 (236)
T ss_dssp GHHHHHHHHHHHHHHH----HSSSEEEEEEECSEECSCCCSEEEE------------ESSCSCCCCCEEHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH----HCCCCEEEEeCCcccCCCCCCeEEe------------ccCCCcccCcEeHHHHHHHHHHH
Confidence 3569999999999886 5799999999999999864321110 01134468899999999999999
Q ss_pred hcCCCCCC-cEEEecCccCHHHHHHHHH
Q 020266 244 FEVPSANG-RYCLVERVSHYSEIVNIIR 270 (328)
Q Consensus 244 ~~~~~~~g-~~~~~~~~~~~~el~~~i~ 270 (328)
+.++...| .|++.++..+++|+++.++
T Consensus 208 ~~~~~~~g~~~~v~~~~~~~~e~~~~i~ 235 (236)
T 3e8x_A 208 VDQQHTIGKTFEVLNGDTPIAKVVEQLG 235 (236)
T ss_dssp TTCGGGTTEEEEEEECSEEHHHHHHTC-
T ss_pred hcCccccCCeEEEeCCCcCHHHHHHHhc
Confidence 99875555 8999877899999998764
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=250.71 Aligned_cols=254 Identities=15% Similarity=0.145 Sum_probs=187.6
Q ss_pred eEEEECCccHHHHHHHHHHHHC--CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 11 VVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+|||||||||||++++++|+++ |++|++++|++++...+.. .+++++.+|++|++++.++++++|+|||+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 72 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA--------QGITVRQADYGDEAALTSALQGVEKLLLI 72 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHH--------TTCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhc--------CCCeEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence 4899999999999999999998 9999999998765443221 36789999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhh
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 168 (328)
|+... +.|+.++.+++++|++. ++++||++||.++ +.. ...|+
T Consensus 73 a~~~~-----------~~~~~~~~~l~~a~~~~-~~~~~v~~Ss~~~-~~~------------------------~~~y~ 115 (286)
T 2zcu_A 73 SSSEV-----------GQRAPQHRNVINAAKAA-GVKFIAYTSLLHA-DTS------------------------PLGLA 115 (286)
T ss_dssp C-------------------CHHHHHHHHHHHH-TCCEEEEEEETTT-TTC------------------------CSTTH
T ss_pred CCCCc-----------hHHHHHHHHHHHHHHHc-CCCEEEEECCCCC-CCC------------------------cchhH
Confidence 98521 14788999999999987 7889999999754 310 12499
Q ss_pred hhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-C--CCCCCCccceeHHHHHHHHHHhhc
Q 020266 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-Q--TYPNVTFGWVNVKDVANAHIQAFE 245 (328)
Q Consensus 169 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~v~v~D~a~~~~~~~~ 245 (328)
.+|..+|.+++. .+++++++||+.++++.. .++.+...++ . ..+++.++++|++|+|++++.++.
T Consensus 116 ~sK~~~e~~~~~----~~~~~~ilrp~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~ 183 (286)
T 2zcu_A 116 DEHIETEKMLAD----SGIVYTLLRNGWYSENYL--------ASAPAALEHGVFIGAAGDGKIASATRADYAAAAARVIS 183 (286)
T ss_dssp HHHHHHHHHHHH----HCSEEEEEEECCBHHHHH--------TTHHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCCeEEEeChHHhhhhH--------HHhHHhhcCCceeccCCCCccccccHHHHHHHHHHHhc
Confidence 999999999864 589999999987666531 1122333222 1 124678899999999999999998
Q ss_pred CCCCCC-cEEEec-CccCHHHHHHHHHHhCCCC----CCCCCCC------CCCCC--------------CCceecchHHH
Q 020266 246 VPSANG-RYCLVE-RVSHYSEIVNIIRELYPAF----QLPEKCA------DDKPH--------------VPTYQVLKEKV 299 (328)
Q Consensus 246 ~~~~~g-~~~~~~-~~~~~~el~~~i~~~~~~~----~~~~~~~------~~~~~--------------~~~~~~~~~k~ 299 (328)
++...| +||+++ +.+|+.|+++.+.+.+|.. .+|.+.. ...+. ...+..|++|+
T Consensus 184 ~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (286)
T 2zcu_A 184 EAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTL 263 (286)
T ss_dssp SSSCTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCCHH
T ss_pred CCCCCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCchHH
Confidence 764444 899987 5899999999999998743 1111100 00000 01245678899
Q ss_pred -HhcCCccccHHHHHHHHHHHHH
Q 020266 300 -KNLGIEFIPVEVSLKETIESLK 321 (328)
Q Consensus 300 -~~lg~~~~~~~~~l~~~~~~~~ 321 (328)
+.+||.+++++++|+++++||.
T Consensus 264 ~~~lg~~~~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 264 SKLIGHPTTTLAESVSHLFNVNN 286 (286)
T ss_dssp HHHHTSCCCCHHHHHHGGGC---
T ss_pred HHHhCcCCCCHHHHHHHHHhhcC
Confidence 7799888999999999998873
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-33 Score=231.59 Aligned_cols=217 Identities=16% Similarity=0.129 Sum_probs=162.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|||||||||||++++++|+++|++|++++|++++...+ ...+++++.+|++|+++ +.++++|+|||+|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~a 70 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR--------LGATVATLVKEPLVLTE--ADLDSVDAVVDAL 70 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--------TCTTSEEEECCGGGCCH--HHHTTCSEEEECC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc--------cCCCceEEecccccccH--hhcccCCEEEECC
Confidence 4699999999999999999999999999999986544321 12478999999999988 7788999999999
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhh
Q 020266 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (328)
Q Consensus 90 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 169 (328)
|.... . ...++|+.++.+++++|++. + ++||++||++++++.+. ....+.+|+.++.| .+.|+.
T Consensus 71 g~~~~--~----~~~~~n~~~~~~l~~a~~~~-~-~~~v~~SS~~~~~~~~~--~~~~~~~~~~~~~~------~~~y~~ 134 (224)
T 3h2s_A 71 SVPWG--S----GRGYLHLDFATHLVSLLRNS-D-TLAVFILGSASLAMPGA--DHPMILDFPESAAS------QPWYDG 134 (224)
T ss_dssp CCCTT--S----SCTHHHHHHHHHHHHTCTTC-C-CEEEEECCGGGSBCTTC--SSCGGGGCCGGGGG------STTHHH
T ss_pred ccCCC--c----chhhHHHHHHHHHHHHHHHc-C-CcEEEEecceeeccCCC--CccccccCCCCCcc------chhhHH
Confidence 97511 1 23568999999999999998 6 89999999877774331 11234455444333 366999
Q ss_pred hhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC-CCCCCCccceeHHHHHHHHHHhhcCCC
Q 020266 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYPNVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 170 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
+|..+|. +..+.++.+++++++||+.+|||+..... . ..... ..+...+++++++|+|++++.++.++.
T Consensus 135 sK~~~e~-~~~~~~~~~i~~~ivrp~~v~g~~~~~~~--~-------~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~ 204 (224)
T 3h2s_A 135 ALYQYYE-YQFLQMNANVNWIGISPSEAFPSGPATSY--V-------AGKDTLLVGEDGQSHITTGNMALAILDQLEHPT 204 (224)
T ss_dssp HHHHHHH-HHHHTTCTTSCEEEEEECSBCCCCCCCCE--E-------EESSBCCCCTTSCCBCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHH-HHHHHhcCCCcEEEEcCccccCCCcccCc--e-------ecccccccCCCCCceEeHHHHHHHHHHHhcCcc
Confidence 9999994 45555567999999999999999543211 0 01111 224566789999999999999999887
Q ss_pred CCC-cEEEec-CccCH
Q 020266 249 ANG-RYCLVE-RVSHY 262 (328)
Q Consensus 249 ~~g-~~~~~~-~~~~~ 262 (328)
..| +|++.+ +..+.
T Consensus 205 ~~g~~~~~~~~~~~~~ 220 (224)
T 3h2s_A 205 AIRDRIVVRDADLEHH 220 (224)
T ss_dssp CTTSEEEEEECC----
T ss_pred ccCCEEEEecCcchhc
Confidence 655 899886 44443
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=251.18 Aligned_cols=209 Identities=20% Similarity=0.187 Sum_probs=173.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
|+|||||||||||++|+++|+++|+ +|++++|+ +|++++.++++++|+|||+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~---------------------------~d~~~l~~~~~~~d~Vih~ 53 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ---------------------------TKEEELESALLKADFIVHL 53 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT---------------------------CCHHHHHHHHHHCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC---------------------------CCHHHHHHHhccCCEEEEC
Confidence 5799999999999999999999998 77776664 4556778888889999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCcc-EEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
|+..... .....+++|+.++.+++++|++. +++ +|||+||.+ .++ .+.|
T Consensus 54 a~~~~~~---~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~Ss~~-~~~-------------------------~~~Y 103 (369)
T 3st7_A 54 AGVNRPE---HDKEFSLGNVSYLDHVLDILTRN-TKKPAILLSSSIQ-ATQ-------------------------DNPY 103 (369)
T ss_dssp CCSBCTT---CSTTCSSSCCBHHHHHHHHHTTC-SSCCEEEEEEEGG-GGS-------------------------CSHH
T ss_pred CcCCCCC---CHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeCchh-hcC-------------------------CCCc
Confidence 9975432 23477889999999999999998 666 999999976 441 1459
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCc-chHHHHHHHHhCCCCC---CCCCccceeHHHHHHHHHHh
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN-TSAAAVLSLIKGAQTY---PNVTFGWVNVKDVANAHIQA 243 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~v~v~D~a~~~~~~ 243 (328)
+.+|.++|.+++.++++.+++++++||+++|||+..+..+ .+..++..+..+.+.. +++.++++|++|+|++++.+
T Consensus 104 ~~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~ 183 (369)
T 3st7_A 104 GESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRA 183 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHH
Confidence 9999999999999999899999999999999998765443 4455666677776432 57788999999999999999
Q ss_pred hcCCCC--CCcEEEec-CccCHHHHHHHHHHhCCC
Q 020266 244 FEVPSA--NGRYCLVE-RVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 244 ~~~~~~--~g~~~~~~-~~~~~~el~~~i~~~~~~ 275 (328)
+.++.. +++||+++ +.+|+.|+++.+++.+|.
T Consensus 184 l~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~ 218 (369)
T 3st7_A 184 IEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQS 218 (369)
T ss_dssp HHTCCCEETTEECCSCCEEEEHHHHHHHHHHHHHH
T ss_pred HhCCcccCCceEEeCCCCceeHHHHHHHHHHHhCC
Confidence 998766 56999885 789999999999998763
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.6e-32 Score=226.24 Aligned_cols=213 Identities=14% Similarity=0.176 Sum_probs=145.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|||||||||||++++++|+++|++|++++|++++...+. ++++++.+|++|+++ +.+.++|+|||+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~--~~~~~~d~vi~~a 69 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTL--SDLSDQNVVVDAY 69 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCH--HHHTTCSEEEECC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhh--hhhcCCCEEEECC
Confidence 47999999999999999999999999999999875543311 478999999999987 7788999999999
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhh
Q 020266 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (328)
Q Consensus 90 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 169 (328)
+.... ..+.|+.++.++++++++. +.+++|++||.+++++.+ ...+..|+.+..| .+.|+.
T Consensus 70 g~~~~--------~~~~~~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~----~~~~~~~~~~~~~------~~~y~~ 130 (221)
T 3ew7_A 70 GISPD--------EAEKHVTSLDHLISVLNGT-VSPRLLVVGGAASLQIDE----DGNTLLESKGLRE------APYYPT 130 (221)
T ss_dssp CSSTT--------TTTSHHHHHHHHHHHHCSC-CSSEEEEECCCC-----------------------------CCCSCC
T ss_pred cCCcc--------ccchHHHHHHHHHHHHHhc-CCceEEEEecceEEEcCC----CCccccccCCCCC------HHHHHH
Confidence 97321 2456999999999999998 788999999988777533 2224455554444 356999
Q ss_pred hhHHHHHHHHHHHH-hcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC-CCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 170 SKTLAEDAAWKFAK-EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-TYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 170 sK~~~E~~~~~~~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
+|..+|.+. .+.. ..+++++++||+.+|||+.... . +. ..+.+ .......++++++|+|++++.+++++
T Consensus 131 ~k~~~e~~~-~~~~~~~gi~~~ivrp~~v~g~~~~~~--~----~~--~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~ 201 (221)
T 3ew7_A 131 ARAQAKQLE-HLKSHQAEFSWTYISPSAMFEPGERTG--D----YQ--IGKDHLLFGSDGNSFISMEDYAIAVLDEIERP 201 (221)
T ss_dssp HHHHHHHHH-HHHTTTTTSCEEEEECSSCCCCC-----------------------------CCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH-HHHhhccCccEEEEeCcceecCCCccC--c----eE--eccccceecCCCCceEeHHHHHHHHHHHHhCc
Confidence 999999873 3333 6799999999999999843211 0 10 11111 11222346999999999999999988
Q ss_pred CCCC-cEEEec-CccC
Q 020266 248 SANG-RYCLVE-RVSH 261 (328)
Q Consensus 248 ~~~g-~~~~~~-~~~~ 261 (328)
...| +||+.+ ...+
T Consensus 202 ~~~g~~~~~~~~~~~~ 217 (221)
T 3ew7_A 202 NHLNEHFTVAGKLEHH 217 (221)
T ss_dssp SCTTSEEECCC-----
T ss_pred cccCCEEEECCCCccc
Confidence 7655 899887 4444
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-32 Score=244.94 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=167.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--Cc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~ 82 (328)
.|++|+|||||||||||++|++.|+++|++|++++|+... ......+... ...+++++.+|++|++++.++++ ++
T Consensus 7 ~M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l--~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 84 (346)
T 3i6i_A 7 PSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKAL--EDKGAIIVYGLINEQEAMEKILKEHEI 84 (346)
T ss_dssp ----CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHH--HHTTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHH--HhCCcEEEEeecCCHHHHHHHHhhCCC
Confidence 3556799999999999999999999999999999997633 2222211111 12478999999999999999999 99
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
|+|||+|+. .|+.++.+++++|++. + +++||+ |+ +| ...+|+++..|.
T Consensus 85 d~Vi~~a~~--------------~n~~~~~~l~~aa~~~-g~v~~~v~-S~----~g--------~~~~e~~~~~p~--- 133 (346)
T 3i6i_A 85 DIVVSTVGG--------------ESILDQIALVKAMKAV-GTIKRFLP-SE----FG--------HDVNRADPVEPG--- 133 (346)
T ss_dssp CEEEECCCG--------------GGGGGHHHHHHHHHHH-CCCSEEEC-SC----CS--------SCTTTCCCCTTH---
T ss_pred CEEEECCch--------------hhHHHHHHHHHHHHHc-CCceEEee-cc----cC--------CCCCccCcCCCc---
Confidence 999999985 2778889999999998 6 888885 43 21 123444444432
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC--CCC--CCCCccceeHHHHH
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTFGWVNVKDVA 237 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~v~v~D~a 237 (328)
+.|+.+|..+|.+++. .+++++++||+.++|....... ........+. ..+ +++.++|+|++|+|
T Consensus 134 ---~~y~~sK~~~e~~l~~----~g~~~tivrpg~~~g~~~~~~~----~~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva 202 (346)
T 3i6i_A 134 ---LNMYREKRRVRQLVEE----SGIPFTYICCNSIASWPYYNNI----HPSEVLPPTDFFQIYGDGNVKAYFVAGTDIG 202 (346)
T ss_dssp ---HHHHHHHHHHHHHHHH----TTCCBEEEECCEESSCCCSCC---------CCCCSSCEEEETTSCCCEEEECHHHHH
T ss_pred ---chHHHHHHHHHHHHHH----cCCCEEEEEecccccccCcccc----ccccccCCCceEEEccCCCceEEecCHHHHH
Confidence 5699999999998865 6899999999999996533211 1111111222 122 56789999999999
Q ss_pred HHHHHhhcCCCC-CCcEEEe--cCccCHHHHHHHHHHhCCC
Q 020266 238 NAHIQAFEVPSA-NGRYCLV--ERVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 238 ~~~~~~~~~~~~-~g~~~~~--~~~~~~~el~~~i~~~~~~ 275 (328)
++++.++.++.. ++.|++. ++.+|+.|+++.+.+.+|.
T Consensus 203 ~~~~~~l~~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~ 243 (346)
T 3i6i_A 203 KFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGR 243 (346)
T ss_dssp HHHHHHTTCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCccccCeEEEEeCCCCCCCHHHHHHHHHHHHCC
Confidence 999999998755 3477776 4799999999999999874
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=227.75 Aligned_cols=230 Identities=17% Similarity=0.122 Sum_probs=170.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHC--CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+++|+|+|||||||||++++++|+++ |++|++++|++.+...+ ..++.++.+|++|++++.++++++|+
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~d~ 72 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI---------GGEADVFIGDITDADSINPAFQGIDA 72 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT---------TCCTTEEECCTTSHHHHHHHHTTCSE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc---------CCCeeEEEecCCCHHHHHHHHcCCCE
Confidence 45789999999999999999999999 89999999975433221 23577899999999999999999999
Q ss_pred EEEccCCCCCC-----------C---CCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 85 VCHTASPFYHD-----------A---KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 85 vih~a~~~~~~-----------~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
|||+|+..... . .+.+...+++|+.++.++++++++. ++++||++||.++..
T Consensus 73 vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~~------------- 138 (253)
T 1xq6_A 73 LVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSMGGTN------------- 138 (253)
T ss_dssp EEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEEETTTTC-------------
T ss_pred EEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-CCCEEEEEcCccCCC-------------
Confidence 99999864321 0 0111245789999999999999987 778999999975321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
|..+..+ ...+.|+.+|.++|.+++. .+++++++||+.+||+..... ..... ...+.+ ....++
T Consensus 139 ~~~~~~~----~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~-~~~~~------~~~~~~-~~~~~~ 202 (253)
T 1xq6_A 139 PDHPLNK----LGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR-ELLVG------KDDELL-QTDTKT 202 (253)
T ss_dssp TTCGGGG----GGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSS-CEEEE------STTGGG-GSSCCE
T ss_pred CCCcccc----ccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchh-hhhcc------CCcCCc-CCCCcE
Confidence 1111011 0113488899999998854 689999999999999864321 11100 001111 123569
Q ss_pred eeHHHHHHHHHHhhcCCCCCC-cEEEecC----ccCHHHHHHHHHHhCCC
Q 020266 231 VNVKDVANAHIQAFEVPSANG-RYCLVER----VSHYSEIVNIIRELYPA 275 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~~~g-~~~~~~~----~~~~~el~~~i~~~~~~ 275 (328)
++++|+|++++.++.++...| +||++++ .+|+.|+++.+.+.+|.
T Consensus 203 ~~~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 203 VPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp EEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred EcHHHHHHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 999999999999999865545 8998763 58999999999998874
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=231.66 Aligned_cols=252 Identities=15% Similarity=0.175 Sum_probs=181.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
|+|||||||||||++++++|++. |++|+++.|++++...+ ...+++++.+|++|++++.++++++|+|||+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~--------~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~ 72 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD--------WRGKVSVRQLDYFNQESMVEAFKGMDTVVFI 72 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG--------GBTTBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh--------hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence 46999999999999999999998 99999999987654332 1247999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhh
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 168 (328)
|+.... ...|+.++.+++++|++. ++++|||+||.+... . ++|.
T Consensus 73 a~~~~~---------~~~~~~~~~~l~~aa~~~-gv~~iv~~Ss~~~~~--------------~------------~~~~ 116 (289)
T 3e48_A 73 PSIIHP---------SFKRIPEVENLVYAAKQS-GVAHIIFIGYYADQH--------------N------------NPFH 116 (289)
T ss_dssp CCCCCS---------HHHHHHHHHHHHHHHHHT-TCCEEEEEEESCCST--------------T------------CCST
T ss_pred CCCCcc---------chhhHHHHHHHHHHHHHc-CCCEEEEEcccCCCC--------------C------------CCCc
Confidence 986321 235899999999999998 889999999943110 0 1122
Q ss_pred hhh--HHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCC--CCCCccceeHHHHHHHHHHh
Q 020266 169 LSK--TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTY--PNVTFGWVNVKDVANAHIQA 243 (328)
Q Consensus 169 ~sK--~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~v~v~D~a~~~~~~ 243 (328)
.++ ..+|..+ .+.+++++++||+.++|+. ..++.....+. ..+ +++.++|++++|+|++++.+
T Consensus 117 ~~~~~~~~e~~~----~~~g~~~~ilrp~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~ 184 (289)
T 3e48_A 117 MSPYFGYASRLL----STSGIDYTYVRMAMYMDPL--------KPYLPELMNMHKLIYPAGDGRINYITRNDIARGVIAI 184 (289)
T ss_dssp THHHHHHHHHHH----HHHCCEEEEEEECEESTTH--------HHHHHHHHHHTEECCCCTTCEEEEECHHHHHHHHHHH
T ss_pred cchhHHHHHHHH----HHcCCCEEEEecccccccc--------HHHHHHHHHCCCEecCCCCceeeeEEHHHHHHHHHHH
Confidence 222 2334333 3568999999999999973 12344444333 222 57788999999999999999
Q ss_pred hcCCCCCC-cEEEecCccCHHHHHHHHHHhCCCC----CCCCCC--C-CCC-CCC-------------CceecchHHH-H
Q 020266 244 FEVPSANG-RYCLVERVSHYSEIVNIIRELYPAF----QLPEKC--A-DDK-PHV-------------PTYQVLKEKV-K 300 (328)
Q Consensus 244 ~~~~~~~g-~~~~~~~~~~~~el~~~i~~~~~~~----~~~~~~--~-~~~-~~~-------------~~~~~~~~k~-~ 300 (328)
+.++...| +||++++.+|+.|+++.+.+.+|.. +++... . ... ... ......++.+ +
T Consensus 185 l~~~~~~g~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 264 (289)
T 3e48_A 185 IKNPDTWGKRYLLSGYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLDQESNDFKQ 264 (289)
T ss_dssp HHCGGGTTCEEEECCEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTCCCCSHHHH
T ss_pred HcCCCcCCceEEeCCCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCccccCchHHH
Confidence 99876534 8998888899999999999998852 111100 0 000 000 0112344556 7
Q ss_pred hcCCccccHHHHHHHHH
Q 020266 301 NLGIEFIPVEVSLKETI 317 (328)
Q Consensus 301 ~lg~~~~~~~~~l~~~~ 317 (328)
.+|++++++++.+++.-
T Consensus 265 ~~G~~p~~~~~~~~~~~ 281 (289)
T 3e48_A 265 LVNDQPQTLQSFLQENI 281 (289)
T ss_dssp HHSSCCCCHHHHHHC--
T ss_pred HhCCCCCCHHHHHHHHH
Confidence 78999888888877654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-31 Score=222.42 Aligned_cols=208 Identities=15% Similarity=0.072 Sum_probs=159.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
|++|+|+|||||||||++++++|+++|+ +|++++|++++..... ..++.++.+|++|++++.++++++|+
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc--------cCCceEEecCcCCHHHHHHHhcCCCE
Confidence 4678999999999999999999999999 9999999876543311 13578899999999999999999999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
||||||..... ..+...+++|+.++.++++++++. +.++||++||.++ ++. +.
T Consensus 88 vi~~ag~~~~~--~~~~~~~~~n~~~~~~~~~~~~~~-~~~~iv~~SS~~~-~~~-----------------------~~ 140 (242)
T 2bka_A 88 GFCCLGTTRGK--AGAEGFVRVDRDYVLKSAELAKAG-GCKHFNLLSSKGA-DKS-----------------------SN 140 (242)
T ss_dssp EEECCCCCHHH--HHHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTC-CTT-----------------------CS
T ss_pred EEECCCccccc--CCcccceeeeHHHHHHHHHHHHHC-CCCEEEEEccCcC-CCC-----------------------Cc
Confidence 99999974321 123477889999999999999987 7789999999754 321 12
Q ss_pred chhhhhhHHHHHHHHHHHHhcCc-cEEEEcCCcccCCCCCCCCcchHHHHHH-HHhCCCCCCCCCccceeHHHHHHHHHH
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSI-DLVTINPAMVIGPLLQPTLNTSAAAVLS-LIKGAQTYPNVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~D~a~~~~~ 242 (328)
+.|+.+|.++|.+++. .++ +++++||+.++||..... ....+.. .....+.. .....+++++|+|++++.
T Consensus 141 ~~Y~~sK~~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~dva~~~~~ 212 (242)
T 2bka_A 141 FLYLQVKGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR---PGEWLVRKFFGSLPDS-WASGHSVPVVTVVRAMLN 212 (242)
T ss_dssp SHHHHHHHHHHHHHHT----TCCSEEEEEECCEEECTTGGGS---HHHHHHHHHHCSCCTT-GGGGTEEEHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh----cCCCCeEEEcCceecCCCCCCc---HHHHHHHHhhcccCcc-ccCCcccCHHHHHHHHHH
Confidence 4599999999999865 467 699999999999964321 2222222 22222211 112359999999999999
Q ss_pred hhcCCCCCCcEEEec
Q 020266 243 AFEVPSANGRYCLVE 257 (328)
Q Consensus 243 ~~~~~~~~g~~~~~~ 257 (328)
++.++...+.|++.+
T Consensus 213 ~~~~~~~~~~~~~~~ 227 (242)
T 2bka_A 213 NVVRPRDKQMELLEN 227 (242)
T ss_dssp HHTSCCCSSEEEEEH
T ss_pred HHhCccccCeeEeeH
Confidence 999877667776654
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-32 Score=224.95 Aligned_cols=203 Identities=17% Similarity=0.110 Sum_probs=157.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+|+|+|||||||||++++++|+++|+ +|++++|++.+. .++++++.+|++|++++.+++ +|+||
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~------------~~~~~~~~~D~~~~~~~~~~~--~d~vi 70 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------------HPRLDNPVGPLAELLPQLDGS--IDTAF 70 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------------CTTEECCBSCHHHHGGGCCSC--CSEEE
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCccc------------CCCceEEeccccCHHHHHHhh--hcEEE
Confidence 57899999999999999999999998 999999987651 246888999999998888877 99999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
|+|+..... ...+...+++|+.++.++++++++. ++++||++||.+++. . +.+.
T Consensus 71 ~~a~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~-~-----------------------~~~~ 124 (215)
T 2a35_A 71 CCLGTTIKE-AGSEEAFRAVDFDLPLAVGKRALEM-GARHYLVVSALGADA-K-----------------------SSIF 124 (215)
T ss_dssp ECCCCCHHH-HSSHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCT-T-----------------------CSSH
T ss_pred ECeeecccc-CCCHHHHHHhhHHHHHHHHHHHHHc-CCCEEEEECCcccCC-C-----------------------CccH
Confidence 999975422 2234578899999999999999998 788999999975432 1 1245
Q ss_pred hhhhhHHHHHHHHHHHHhcCcc-EEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhc
Q 020266 167 YPLSKTLAEDAAWKFAKEKSID-LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~-~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~ 245 (328)
|+.+|.++|.+++. .+++ ++++||+.+|||..... + +..........++..++++|++|+|++++.++.
T Consensus 125 y~~sK~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~---~---~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~ 194 (215)
T 2a35_A 125 YNRVKGELEQALQE----QGWPQLTIARPSLLFGPREEFR---L---AEILAAPIARILPGKYHGIEACDLARALWRLAL 194 (215)
T ss_dssp HHHHHHHHHHHHTT----SCCSEEEEEECCSEESTTSCEE---G---GGGTTCCCC----CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----cCCCeEEEEeCceeeCCCCcch---H---HHHHHHhhhhccCCCcCcEeHHHHHHHHHHHHh
Confidence 99999999999865 4899 99999999999975421 1 111111111122336789999999999999999
Q ss_pred CCCCCCcEEEec-CccCH
Q 020266 246 VPSANGRYCLVE-RVSHY 262 (328)
Q Consensus 246 ~~~~~g~~~~~~-~~~~~ 262 (328)
++. ++.||+++ +..++
T Consensus 195 ~~~-~~~~~i~~~~~~~~ 211 (215)
T 2a35_A 195 EEG-KGVRFVESDELRKL 211 (215)
T ss_dssp CCC-SEEEEEEHHHHHHH
T ss_pred cCC-CCceEEcHHHHHHh
Confidence 875 67999986 44444
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=222.11 Aligned_cols=233 Identities=18% Similarity=0.147 Sum_probs=169.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++.+|++|++++.++++
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 77 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERIDVVAADVLARY 77 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999999999999876655443321 3578999999999998888776
Q ss_pred -CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||... ....+.+...+++|+.|+.++++++ ++. +.++||++||.++..+.+
T Consensus 78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~---------- 146 (281)
T 3m1a_A 78 GRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRER-GSGSVVNISSFGGQLSFA---------- 146 (281)
T ss_dssp SCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTCCCT----------
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEcCccccCCCC----------
Confidence 7899999999732 2223345578899999955555554 444 567999999987655211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC-------cchHHH---HHHHH
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-------NTSAAA---VLSLI 217 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-------~~~~~~---~~~~~ 217 (328)
+.+.|+.||.+.|.+++.++.+ +|+++++++||.+.+|...... ...... .....
T Consensus 147 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (281)
T 3m1a_A 147 ------------GFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLV 214 (281)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHH
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHH
Confidence 2356999999999999999888 6999999999999887533211 111111 11222
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHh
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIREL 272 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~ 272 (328)
.. .....+.+++|+|++++.++.++..+++|++++ ....+.+....+.+.
T Consensus 215 ~~-----~~~~~~~~~~dva~a~~~~~~~~~~~~~~~l~s~~~~~i~g~~~~i~~~ 265 (281)
T 3m1a_A 215 QG-----SDGSQPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRAE 265 (281)
T ss_dssp HC----------CBCHHHHHHHHHHHHHSSSCCSEEEESHHHHHHHHHHHHHHHHH
T ss_pred hh-----ccCCCCCCHHHHHHHHHHHHhCCCCCeEEecCchHHHHHHHHHHHHHHH
Confidence 21 234568899999999999999887667888876 445556666555554
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-29 Score=204.49 Aligned_cols=200 Identities=15% Similarity=0.167 Sum_probs=151.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+|+|+|||||||||++++++|+++|++|++++|++.+...+ ...+++++.+|++|++++.++++++|+|||+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~ 74 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVAGQDAVIVL 74 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc--------cCCceEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence 36899999999999999999999999999999986543221 1347899999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhh
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 168 (328)
|+..... ...++|+.++.++++++++. ++++||++||.+ .++... .. + . +.+.|+
T Consensus 75 a~~~~~~------~~~~~n~~~~~~~~~~~~~~-~~~~~v~~Ss~~-~~~~~~----~~------~-~------~~~~y~ 129 (206)
T 1hdo_A 75 LGTRNDL------SPTTVMSEGARNIVAAMKAH-GVDKVVACTSAF-LLWDPT----KV------P-P------RLQAVT 129 (206)
T ss_dssp CCCTTCC------SCCCHHHHHHHHHHHHHHHH-TCCEEEEECCGG-GTSCTT----CS------C-G------GGHHHH
T ss_pred ccCCCCC------CccchHHHHHHHHHHHHHHh-CCCeEEEEeeee-eccCcc----cc------c-c------cchhHH
Confidence 9875431 22358999999999999987 788999999975 443210 00 0 0 135699
Q ss_pred hhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCC-CCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQ-PTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 169 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.+|..+|.+++ +.+++++++||+.+ ++... ...... ..+. +. .++++++|+|++++.+++++
T Consensus 130 ~~K~~~e~~~~----~~~i~~~~lrp~~~-~~~~~~~~~~~~-------~~~~---~~--~~~i~~~Dva~~~~~~~~~~ 192 (206)
T 1hdo_A 130 DDHIRMHKVLR----ESGLKYVAVMPPHI-GDQPLTGAYTVT-------LDGR---GP--SRVISKHDLGHFMLRCLTTD 192 (206)
T ss_dssp HHHHHHHHHHH----HTCSEEEEECCSEE-ECCCCCSCCEEE-------SSSC---SS--CSEEEHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHH----hCCCCEEEEeCCcc-cCCCCCcceEec-------ccCC---CC--CCccCHHHHHHHHHHHhcCc
Confidence 99999999884 36899999999997 43321 111000 0111 11 58999999999999999987
Q ss_pred CCCC-cEEEecC
Q 020266 248 SANG-RYCLVER 258 (328)
Q Consensus 248 ~~~g-~~~~~~~ 258 (328)
...| .|+++++
T Consensus 193 ~~~g~~~~i~~g 204 (206)
T 1hdo_A 193 EYDGHSTYPSHQ 204 (206)
T ss_dssp TTTTCEEEEECC
T ss_pred cccccceeeecc
Confidence 6555 8888763
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=216.59 Aligned_cols=240 Identities=17% Similarity=0.211 Sum_probs=177.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||++++++|+++|++|++++|+......+...+ ....++.++.+|++|++++.++++
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI---GSPDVISFVHCDVTKDEDVRNLVDTTIAKH 90 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHh---CCCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999765443332222 112378999999999998888776
Q ss_pred -CccEEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 -GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 -~~d~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------- 161 (278)
T 2bgk_A 91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE--------- 161 (278)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT---------
T ss_pred CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCC---------
Confidence 78999999996432 112345578899999999999988763 1457999999976554210
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
. ....|+.+|.+.|.+++.++.+ +|++++++|||.++|+.................... +..
T Consensus 162 ------~------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~---~~~ 226 (278)
T 2bgk_A 162 ------G------VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQA---ANL 226 (278)
T ss_dssp ------T------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHT---CSS
T ss_pred ------C------CCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcc---ccc
Confidence 0 1245999999999999999876 589999999999999965432221222333333222 222
Q ss_pred CccceeHHHHHHHHHHhhcCC--CCCC-cEEEec-CccCHHHHHHHHHHhC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE-RVSHYSEIVNIIRELY 273 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~-~~~~~~el~~~i~~~~ 273 (328)
...+++++|+|++++.++... ...| .|++.+ ...++.|+++.+.+.+
T Consensus 227 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 227 KGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp CSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred ccccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhhc
Confidence 346899999999999998753 2346 677765 6789999999886643
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-30 Score=228.35 Aligned_cols=220 Identities=15% Similarity=0.178 Sum_probs=167.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEcc-CCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN-LLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~d~vih 87 (328)
+|+|+|||||||||++++++|+++|++|++++|+.++... ..+. ...+++++.+| ++|++++.++++++|+|||
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-~~l~----~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~ 79 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA-EELQ----AIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 79 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH-HHHH----TSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhH-HHHh----hcCCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence 5789999999999999999999999999999998776421 1111 12368899999 9999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchh-hhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMA-AVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~-~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
+++... .+.|..+ ++++++|++. + +++|||+||.+ ..++. . +.+
T Consensus 80 ~a~~~~----------~~~~~~~-~~l~~aa~~~-g~v~~~V~~SS~~~~~~~~----------------~------~~~ 125 (352)
T 1xgk_A 80 NTTSQA----------GDEIAIG-KDLADAAKRA-GTIQHYIYSSMPDHSLYGP----------------W------PAV 125 (352)
T ss_dssp CCCSTT----------SCHHHHH-HHHHHHHHHH-SCCSEEEEEECCCGGGTSS----------------C------CCC
T ss_pred cCCCCC----------cHHHHHH-HHHHHHHHHc-CCccEEEEeCCccccccCC----------------C------CCc
Confidence 987531 1347777 9999999997 6 88999999975 23311 0 124
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHH-H-HHhCCC-----CCCCCCccceeH-HHHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVL-S-LIKGAQ-----TYPNVTFGWVNV-KDVA 237 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~-~~~~~~-----~~~~~~~~~v~v-~D~a 237 (328)
.|+.+|..+|.+++. .+++++++||+ +||++....... ++. . ...+.. ..+++.++++|+ +|+|
T Consensus 126 ~y~~sK~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva 197 (352)
T 1xgk_A 126 PMWAPKFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPYP---LFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVG 197 (352)
T ss_dssp TTTHHHHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSCS---SCBEEECTTSCEEEEESSCTTSCEEEECHHHHHH
T ss_pred cHHHHHHHHHHHHHH----cCCCEEEEecc-eecCCchhcccc---cccccccCCCceEEeeccCCCCceeeEecHHHHH
Confidence 599999999999865 48999999987 788865322100 010 0 112321 115778899999 8999
Q ss_pred HHHHHhhcCCC---CCCcEEEecCccCHHHHHHHHHHhCCC
Q 020266 238 NAHIQAFEVPS---ANGRYCLVERVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 238 ~~~~~~~~~~~---~~g~~~~~~~~~~~~el~~~i~~~~~~ 275 (328)
++++.++.++. .+++||++++.+|+.|+++.+.+.+|.
T Consensus 198 ~ai~~~l~~~~~~~~g~~~~l~~~~~s~~e~~~~i~~~~G~ 238 (352)
T 1xgk_A 198 PALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNR 238 (352)
T ss_dssp HHHHHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCchhhCCeEEEEecCCCCHHHHHHHHHHHHCC
Confidence 99999998652 345999998889999999999999875
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-30 Score=224.15 Aligned_cols=223 Identities=13% Similarity=0.142 Sum_probs=170.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
+|+|+||||||+||++++++|+++| ++|++++|++.+... ..+. ..+++++.+|++|++++.++++++|+|||
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~-~~l~-----~~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 78 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA-KELR-----LQGAEVVQGDQDDQVIMELALNGAYATFI 78 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH-HHHH-----HTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH-HHHH-----HCCCEEEEecCCCHHHHHHHHhcCCEEEE
Confidence 5789999999999999999999998 999999998766421 1111 13688999999999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
+|+.... ...+.|+.++.+++++|++. ++++||++||.+ +++.. ++. +.+.|
T Consensus 79 ~a~~~~~-------~~~~~~~~~~~~~~~aa~~~-gv~~iv~~S~~~-~~~~~----------~~~---------~~~~y 130 (299)
T 2wm3_A 79 VTNYWES-------CSQEQEVKQGKLLADLARRL-GLHYVVYSGLEN-IKKLT----------AGR---------LAAAH 130 (299)
T ss_dssp CCCHHHH-------TCHHHHHHHHHHHHHHHHHH-TCSEEEECCCCC-HHHHT----------TTS---------CCCHH
T ss_pred eCCCCcc-------ccchHHHHHHHHHHHHHHHc-CCCEEEEEcCcc-ccccC----------CCc---------ccCch
Confidence 9974221 12456889999999999987 889999977754 44211 111 12459
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC-----CCCCCCccceeHHHHHHHHHH
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ-----TYPNVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~v~D~a~~~~~ 242 (328)
+.+|..+|.+++. .+++++++||+.+||+......... ...+.. ..++..++|+|++|+|++++.
T Consensus 131 ~~sK~~~e~~~~~----~gi~~~ilrp~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~ 200 (299)
T 2wm3_A 131 FDGKGEVEEYFRD----IGVPMTSVRLPCYFENLLSHFLPQK------APDGKSYLLSLPTGDVPMDGMSVSDLGPVVLS 200 (299)
T ss_dssp HHHHHHHHHHHHH----HTCCEEEEECCEEGGGGGTTTCCEE------CTTSSSEEECCCCTTSCEEEECGGGHHHHHHH
T ss_pred hhHHHHHHHHHHH----CCCCEEEEeecHHhhhchhhcCCcc------cCCCCEEEEEecCCCCccceecHHHHHHHHHH
Confidence 9999999999865 4899999999999997532111100 112211 125778899999999999999
Q ss_pred hhcCCC--CCCcEEEecCccCHHHHHHHHHHhCCC
Q 020266 243 AFEVPS--ANGRYCLVERVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 243 ~~~~~~--~~g~~~~~~~~~~~~el~~~i~~~~~~ 275 (328)
++.++. .+..|+++++.+|+.|+++.+.+.+|.
T Consensus 201 ~l~~~~~~~g~~~~~~g~~~s~~e~~~~~~~~~g~ 235 (299)
T 2wm3_A 201 LLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRK 235 (299)
T ss_dssp HHHSHHHHTTCEEECCSEEECHHHHHHHHHHHHSS
T ss_pred HHcChhhhCCeEEEeeeccCCHHHHHHHHHHHHCC
Confidence 998752 234899888889999999999999874
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=215.31 Aligned_cols=240 Identities=15% Similarity=0.135 Sum_probs=161.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhc-cCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+.. .....++.++.+|++|++++.++++
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999986554443322210 1123468999999999998888876
Q ss_pred ---CccEEEEccCCCCC-----C----CCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhh-hccCCCCCC
Q 020266 81 ---GCDGVCHTASPFYH-----D----AKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAA-VLNTGKPRT 144 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~----~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~-~~~~~~~~~ 144 (328)
++|+||||||.... . ..+.+...+++|+.++.++++++.+.. + +++|++||.++ +.+.+
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~---- 157 (278)
T 1spx_A 83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHATP---- 157 (278)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCCT----
T ss_pred HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCCC----
Confidence 79999999986422 1 233455789999999999999887641 3 79999999765 33110
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC---cch---HHHHHH
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL---NTS---AAAVLS 215 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~---~~~---~~~~~~ 215 (328)
....|+.||.+.+.+++.++.+ +|+++++|+||.+.++...... ... ......
T Consensus 158 ------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~ 219 (278)
T 1spx_A 158 ------------------DFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMAT 219 (278)
T ss_dssp ------------------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHH
T ss_pred ------------------CccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHH
Confidence 1245999999999999998876 5899999999999998533210 000 011222
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC---CCC-cEEEec-CccCHHHHHHHHHHhC
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS---ANG-RYCLVE-RVSHYSEIVNIIRELY 273 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~---~~g-~~~~~~-~~~~~~el~~~i~~~~ 273 (328)
.....| ...+++++|+|+++++++..+. ..| .+++.+ ...++.++++.+.+.+
T Consensus 220 ~~~~~p-----~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 220 MKECVP-----AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp HHHHCT-----TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC------------
T ss_pred HHhcCC-----CcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 222111 2358899999999999987532 446 667765 6789999999887653
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=211.06 Aligned_cols=231 Identities=15% Similarity=0.104 Sum_probs=169.0
Q ss_pred Ccccc--cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 1 MSSVA--AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 1 ~~~~~--~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
|+..+ .+++|+|+||||+|+||++++++|+++|++|++++|+.+....+...+... ..++.++.+|++|++++.++
T Consensus 1 m~~~~~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~ 78 (255)
T 1fmc_A 1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSAL 78 (255)
T ss_dssp CCCGGGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHH
T ss_pred CCCccCCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHH
Confidence 55433 346789999999999999999999999999999999865544433322221 34788999999999988887
Q ss_pred hC-------CccEEEEccCCCCC----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCC
Q 020266 79 VD-------GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 79 ~~-------~~d~vih~a~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
++ ++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 79 ~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---- 154 (255)
T 1fmc_A 79 ADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI---- 154 (255)
T ss_dssp HHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT----
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCC----
Confidence 76 79999999997432 122334578899999999999988532 1457999999976543110
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
+.+.|+.+|.+.|.+++.++.+. +++++++|||.++++...... ..........+.+
T Consensus 155 ------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~~ 214 (255)
T 1fmc_A 155 ------------------NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQHTP 214 (255)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC--CHHHHHHHHHTCS
T ss_pred ------------------CCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhcc--ChHHHHHHHhcCC
Confidence 13559999999999999998764 899999999999998532211 1233344444432
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec-CccCH
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE-RVSHY 262 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~-~~~~~ 262 (328)
...+++++|+|++++.++.... ..| .|++.+ ...|+
T Consensus 215 -----~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 215 -----IRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp -----SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred -----cccCCCHHHHHHHHHHHhCCccccCCCcEEEECCceeccC
Confidence 2458899999999999987542 245 788875 45553
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-29 Score=218.01 Aligned_cols=243 Identities=16% Similarity=0.087 Sum_probs=172.9
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
...+++|+|+||||+|+||++++++|+++|++|++++|+.++...+...+... ...++.++.+|++|++++.++++
T Consensus 21 ~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (302)
T 1w6u_A 21 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ-TGNKVHAIQCDVRDPDMVQNTVSELI 99 (302)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999865544333222111 02478999999999998887765
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 100 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~------- 172 (302)
T 1w6u_A 100 KVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSG------- 172 (302)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCT-------
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCC-------
Confidence 46999999996322 223345678999999999998887542 2457999999987655211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
+...|+.||.+.|.+++.++.+ +|++++++|||.++++..................+.+
T Consensus 173 ---------------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p--- 234 (302)
T 1w6u_A 173 ---------------FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP--- 234 (302)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT---
T ss_pred ---------------CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCC---
Confidence 1245999999999999999887 6899999999999998432111100011123333222
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec-CccCHHHHHHHHHHhCC
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE-RVSHYSEIVNIIRELYP 274 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~-~~~~~~el~~~i~~~~~ 274 (328)
...+++++|+|++++.++.... ..| .|++.+ ..++++++++.+.+..+
T Consensus 235 --~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g 286 (302)
T 1w6u_A 235 --CGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVTK 286 (302)
T ss_dssp --TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCCH
T ss_pred --cCCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhcc
Confidence 2358899999999999987542 245 677765 56777888777766544
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=208.27 Aligned_cols=222 Identities=16% Similarity=0.137 Sum_probs=165.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecC-CCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+|+||||+|+||++++++|+++|++|++++|+ .++...+...+... ..++.++.+|++|++++.++++
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVA 81 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999998 66655443333221 3478999999999999888876
Q ss_pred ---CccEEEEccCC-CCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---C--c---cEEEEecchhhhc-cCCCC
Q 020266 81 ---GCDGVCHTASP-FYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S--I---KRVVLTSSMAAVL-NTGKP 142 (328)
Q Consensus 81 ---~~d~vih~a~~-~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~---~~~v~~SS~~~~~-~~~~~ 142 (328)
++|+||||||. ... ...+.+...+++|+.++.++++++.+.. + . +++|++||.++.. +.+
T Consensus 82 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-- 159 (258)
T 3afn_B 82 KFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGP-- 159 (258)
T ss_dssp HHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCT--
T ss_pred HcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCC--
Confidence 79999999996 221 1222345678999999999998775431 1 2 6899999976544 110
Q ss_pred CCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhC
Q 020266 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG 219 (328)
Q Consensus 143 ~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~ 219 (328)
+.+.|+.+|.+.|.+++.++.+. |++++++|||.++++..... ..........+
T Consensus 160 --------------------~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~ 216 (258)
T 3afn_B 160 --------------------GAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK---TQDVRDRISNG 216 (258)
T ss_dssp --------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC---CHHHHHHHHTT
T ss_pred --------------------CchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc---CHHHHHHHhcc
Confidence 13559999999999999988765 89999999999999864332 12333334443
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCC---CCCC-cEEEecCc
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVP---SANG-RYCLVERV 259 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~---~~~g-~~~~~~~~ 259 (328)
.+ ...+++++|+|++++.++.++ ...| .|++.++.
T Consensus 217 ~~-----~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 217 IP-----MGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ 255 (258)
T ss_dssp CT-----TCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred CC-----CCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence 22 346899999999999998754 2346 67776643
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=207.68 Aligned_cols=223 Identities=16% Similarity=0.125 Sum_probs=164.4
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|..+++|++|||||+|+||+++++.|+++|++|++++|+.+....+.... ..++.++++|++|++++.++++
T Consensus 3 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 3 MKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQMDVTRQDSIDAAIAATV 77 (259)
T ss_dssp -CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCCceEEEeeCCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999866554433332 2468899999999998888776
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC----CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. ..+++|++||.+++.+.+
T Consensus 78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 150 (259)
T 4e6p_A 78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEA------- 150 (259)
T ss_dssp HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCC-------
Confidence 79999999997432 2234556788899999999999886541 146899999987665311
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC---
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--- 221 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--- 221 (328)
....|+.||.+.+.+++.++.++ |+++++++||.+++|.... ....+........
T Consensus 151 ---------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~~~~ 211 (259)
T 4e6p_A 151 ---------------LVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDG----VDALFARYENRPRGEK 211 (259)
T ss_dssp ---------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHH----HHHHHHHHHTCCTTHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhh----hhhhhhhhccCChHHH
Confidence 12559999999999999998875 8999999999999985321 1111111111100
Q ss_pred --CC--CCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 222 --TY--PNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 222 --~~--~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.+ ......+.+++|+|+++++++.... ..| .|++.+
T Consensus 212 ~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdg 254 (259)
T 4e6p_A 212 KRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDG 254 (259)
T ss_dssp HHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEEST
T ss_pred HHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECc
Confidence 00 1345679999999999999886432 345 677765
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=205.04 Aligned_cols=224 Identities=15% Similarity=0.103 Sum_probs=163.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||++++++|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.++++
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME--GHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999865544333322221 3478999999999998888775
Q ss_pred -CccEEEEccCCCC-C-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFY-H-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~-~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||... . ...+.+...+++|+.++.++++++.+. .+.+++|++||.++..+.+
T Consensus 89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 158 (260)
T 3awd_A 89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNR---------- 158 (260)
T ss_dssp SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCS----------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCC----------
Confidence 6899999999643 1 112234577899999999999987652 1457899999976544211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
.. +.+.|+.+|.+.|.+++.++.+ +|++++++|||.+++|...... ...........+.+ .
T Consensus 159 ----~~------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~-~~~~~~~~~~~~~~-----~ 222 (260)
T 3awd_A 159 ----PQ------QQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGM-EKPELYDAWIAGTP-----M 222 (260)
T ss_dssp ----SS------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHH-TCHHHHHHHHHTCT-----T
T ss_pred ----CC------CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhccc-CChHHHHHHHhcCC-----c
Confidence 00 1245999999999999999887 6999999999999998643100 01233334444332 2
Q ss_pred ccceeHHHHHHHHHHhhcCC--CCCC-cEEEecC
Q 020266 228 FGWVNVKDVANAHIQAFEVP--SANG-RYCLVER 258 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~~ 258 (328)
..+++++|+|++++.++... ...| .|++.++
T Consensus 223 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 256 (260)
T 3awd_A 223 GRVGQPDEVASVVQFLASDAASLMTGAIVNVDAG 256 (260)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHhCchhccCCCcEEEECCc
Confidence 45889999999999998753 2356 6677654
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=205.37 Aligned_cols=211 Identities=18% Similarity=0.170 Sum_probs=161.4
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|..+++|+||||||+|+||+++++.|+++|++|++++|+...... .++.++.+|++|++++.++++
T Consensus 23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-----------~~~~~~~~Dv~d~~~v~~~~~~~~ 91 (260)
T 3un1_A 23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD-----------PDIHTVAGDISKPETADRIVREGI 91 (260)
T ss_dssp HHHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSS-----------TTEEEEESCTTSHHHHHHHHHHHH
T ss_pred hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc-----------CceEEEEccCCCHHHHHHHHHHHH
Confidence 445678999999999999999999999999999999998765322 368899999999999888776
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++. +. +.+++|++||..+....+
T Consensus 92 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~------- 163 (260)
T 3un1_A 92 ERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITTSLVDQPMV------- 163 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCTTTTSCBT-------
T ss_pred HHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEechhhccCCC-------
Confidence 79999999997432 2234456788999999999999874 44 567999999965432111
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
. .+...|+.||.+.+.+++.++.++ |+++++++||.+.+|..... ........
T Consensus 164 -------~------~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~------~~~~~~~~----- 219 (260)
T 3un1_A 164 -------G------MPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE------THSTLAGL----- 219 (260)
T ss_dssp -------T------CCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG------GHHHHHTT-----
T ss_pred -------C------CccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH------HHHHHhcc-----
Confidence 0 012559999999999999999987 89999999999999864321 11122222
Q ss_pred CCCccceeHHHHHHHHHHhhcCCCCCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~ 257 (328)
.....+.+++|+|++++++.......| .+++.+
T Consensus 220 ~p~~r~~~~~dva~av~~L~~~~~itG~~i~vdG 253 (260)
T 3un1_A 220 HPVGRMGEIRDVVDAVLYLEHAGFITGEILHVDG 253 (260)
T ss_dssp STTSSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred CCCCCCcCHHHHHHHHHHhcccCCCCCcEEEECC
Confidence 123458899999999999966555567 667654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=205.69 Aligned_cols=218 Identities=18% Similarity=0.126 Sum_probs=160.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Cc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 82 (328)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++...+... ..+++++.+|++|++++.++++ .+
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE------CPGIEPVCVDLGDWDATEKALGGIGPV 77 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH------STTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh------ccCCCcEEecCCCHHHHHHHHHHcCCC
Confidence 35688999999999999999999999999999999986544332221 1356778999999999998886 47
Q ss_pred cEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---C-ccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|+||||||.... ...+.+...+++|+.++.++++++.+.. + .++||++||.+++.+.+
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 144 (244)
T 1cyd_A 78 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP------------- 144 (244)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT-------------
T ss_pred CEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCC-------------
Confidence 999999996432 1223455788999999999999876641 3 57899999976544210
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
....|+.+|.+.|.+++.++.+ .+++++++||+.++|+...... ....++..+..+. ..+++
T Consensus 145 ---------~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~-~~~~~~~~~~~~~-----~~~~~ 209 (244)
T 1cyd_A 145 ---------NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS-ADPEFARKLKERH-----PLRKF 209 (244)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT-CCHHHHHHHHHHS-----TTSSC
T ss_pred ---------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccc-cCHHHHHHHHhcC-----CccCC
Confidence 1245999999999999999887 5899999999999997432100 0122334444433 23679
Q ss_pred eeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 231 VNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
++++|+|++++.++.++. ..| .+++.+
T Consensus 210 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 239 (244)
T 1cyd_A 210 AEVEDVVNSILFLLSDRSASTSGGGILVDA 239 (244)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSSEEEEST
T ss_pred CCHHHHHHHHHHHhCchhhcccCCEEEECC
Confidence 999999999999997642 345 555544
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=201.02 Aligned_cols=218 Identities=17% Similarity=0.081 Sum_probs=165.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||++++++|+++|++|++++|+.++........ ..++.++.+|++|++++.++++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHHVVDLTNEVSVRALIDFTIDT 82 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 466899999999999999999999999999999999987766544433 3468899999999998888776
Q ss_pred --CccEEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 --GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 --~~d~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|++|||||.... ...+.+...+++|+.++.++++++ ++. +.++||++||.+++.+.+
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~------- 154 (271)
T 3tzq_B 83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISSATAHAAYD------- 154 (271)
T ss_dssp HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTSBCS-------
T ss_pred cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCHHHcCCCC-------
Confidence 78999999997521 123345678999999999999988 444 567999999986654211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.+++|...... ............
T Consensus 155 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~--~~~~~~~~~~~~---- 213 (271)
T 3tzq_B 155 ---------------MSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGL--PQPIVDIFATHH---- 213 (271)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC-----CHHHHHHHHTTS----
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccC--CHHHHHHHHhcC----
Confidence 2356999999999999999987 6899999999999998654221 122233333322
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
....+.+++|+|+++++++.... ..| .+++.++
T Consensus 214 -~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 214 -LAGRIGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp -TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CCCCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 12347899999999999987542 356 5566554
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-29 Score=211.81 Aligned_cols=227 Identities=19% Similarity=0.116 Sum_probs=157.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----CccE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----GCDG 84 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~ 84 (328)
||+||||||+||||++++++|+++|++|++++|+.++... .+.+|+++++++.++++ ++|+
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------------~~~~D~~~~~~~~~~~~~~~~~~d~ 65 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA---------------DLSTPGGRETAVAAVLDRCGGVLDG 65 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHHHHHHHHHHHHTTCCSE
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc---------------cccCCcccHHHHHHHHHHcCCCccE
Confidence 4689999999999999999999999999999998654321 15689999888888876 7999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC-------CCC
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE-------TWF 154 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E-------~~~ 154 (328)
||||||.... ...+...+++|+.++.++++++.+. .+.+++|++||.+++++.. ...+..| +.+
T Consensus 66 vi~~Ag~~~~--~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----~~~~~~~~~~~~~~~~~ 139 (255)
T 2dkn_A 66 LVCCAGVGVT--AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGA----AELPMVEAMLAGDEARA 139 (255)
T ss_dssp EEECCCCCTT--SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTG----GGCHHHHHHHHTCHHHH
T ss_pred EEECCCCCCc--chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccc----cccchhhhhcccchhhh
Confidence 9999997542 2345688999999999999987653 2457999999987655321 0111111 000
Q ss_pred CC-ccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHH-HHHHHHhCCCCCCCCCcc
Q 020266 155 SD-PEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAA-AVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 155 ~~-~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 229 (328)
.. ......+.+.|+.+|.+.|.+++.++.+ ++++++++||+.++||..... ... ........ ..+ ...+
T Consensus 140 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~---~~~~~~~~~~~~--~~~-~~~~ 213 (255)
T 2dkn_A 140 IELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQAS---KADPRYGESTRR--FVA-PLGR 213 (255)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHH---HHCTTTHHHHHS--CCC-TTSS
T ss_pred hhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhc---ccchhhHHHHHH--HHH-HhcC
Confidence 00 0000012356999999999999998876 699999999999999842110 000 00011111 112 4567
Q ss_pred ceeHHHHHHHHHHhhcCC--CCCC-cEEEec-CccCH
Q 020266 230 WVNVKDVANAHIQAFEVP--SANG-RYCLVE-RVSHY 262 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~-~~~~~ 262 (328)
+++++|+|++++.++.++ ...| .|++.+ ...++
T Consensus 214 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~ 250 (255)
T 2dkn_A 214 GSEPREVAEAIAFLLGPQASFIHGSVLFVDGGMDALM 250 (255)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccceeeEEEecCCeEeee
Confidence 999999999999999865 3345 778875 44444
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=210.91 Aligned_cols=242 Identities=19% Similarity=0.142 Sum_probs=176.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccC-CCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++.......+.... ...++.++.+|++|++++.++++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999998766555444433322 12378999999999998887775
Q ss_pred ---CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||... ....+.+...+++|+.|+.++++++.+. .+.++||++||.+++.+.+
T Consensus 88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 159 (281)
T 3svt_A 88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHR-------- 159 (281)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCT--------
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCC--------
Confidence 6799999999622 1223345678999999999999987664 1345899999987665311
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.||.+.+.+++.++.++ |+++++++||.+.++...... .............
T Consensus 160 --------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~----- 219 (281)
T 3svt_A 160 --------------WFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAIT-ESAELSSDYAMCT----- 219 (281)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-TCHHHHHHHHHHC-----
T ss_pred --------------CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcc-cCHHHHHHHHhcC-----
Confidence 12459999999999999998875 699999999999988532100 0112223333322
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec-CccC-HHHHHHHHHHhCCC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE-RVSH-YSEIVNIIRELYPA 275 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~-~~~~-~~el~~~i~~~~~~ 275 (328)
....+.+++|+|+++++++.... ..| .+++.+ ...+ ..++.+.+.+.++.
T Consensus 220 p~~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~ 274 (281)
T 3svt_A 220 PLPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGR 274 (281)
T ss_dssp SSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCT
T ss_pred CCCCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCC
Confidence 23457899999999999987543 256 667754 4444 66788888777764
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=200.47 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=163.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|.. +..+.+...+... ..++.++++|++|++++.++++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK--GVDSFAIQANVADADEVKAMIKEVVSQ 79 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999988754 3333333333222 3578899999999998888776
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++.++.+
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 149 (246)
T 3osu_A 80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNP---------- 149 (246)
T ss_dssp HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCC----------
Confidence 78999999997432 223345578999999999999988432 1457999999987776321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.+.++..... ..........+. ..
T Consensus 150 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~-----p~ 209 (246)
T 3osu_A 150 ------------GQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL---SDELKEQMLTQI-----PL 209 (246)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCS---CHHHHHHHHTTC-----TT
T ss_pred ------------CChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCccccc---CHHHHHHHHhcC-----CC
Confidence 1255999999999999999884 489999999999999865432 223334444432 23
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
..+.+++|+|+++++++.... ..| .+++.++
T Consensus 210 ~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG 243 (246)
T 3osu_A 210 ARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243 (246)
T ss_dssp CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 457899999999999987543 246 6666543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=200.15 Aligned_cols=222 Identities=15% Similarity=0.176 Sum_probs=167.6
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|+.|..+++|+++||||+|+||+++++.|+++|++|++++|+.+....+.... ..+..++.+|++|++++.++++
T Consensus 1 M~~~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~ 75 (248)
T 3op4_A 1 MSQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL-----GDNGKGMALNVTNPESIEAVLK 75 (248)
T ss_dssp -CCTTCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHH
T ss_pred CccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cccceEEEEeCCCHHHHHHHHH
Confidence 67777778999999999999999999999999999999999876555443332 2357889999999998888776
Q ss_pred -------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCC
Q 020266 81 -------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 -------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
++|++|||||.... ...+.+...+++|+.|+.++++++.+. .+.+++|++||.++..+.+
T Consensus 76 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~----- 150 (248)
T 3op4_A 76 AITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNA----- 150 (248)
T ss_dssp HHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCC-----
Confidence 78999999997432 233456678999999999999987652 1457899999987766321
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
....|+.||.+.+.+.+.++.+. |+++++++||.+.++...... ...........
T Consensus 151 -----------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---~~~~~~~~~~~-- 208 (248)
T 3op4_A 151 -----------------GQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALN---DEQRTATLAQV-- 208 (248)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSC---HHHHHHHHHTC--
T ss_pred -----------------CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcC---HHHHHHHHhcC--
Confidence 23559999999999999998864 899999999999988643321 22223333332
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....+.+++|+|+++++++.... ..| .+++.+
T Consensus 209 ---p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdg 243 (248)
T 3op4_A 209 ---PAGRLGDPREIASAVAFLASPEAAYITGETLHVNG 243 (248)
T ss_dssp ---TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---CCCCCcCHHHHHHHHHHHcCCccCCccCcEEEECC
Confidence 23458899999999999987532 356 455544
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=200.52 Aligned_cols=217 Identities=20% Similarity=0.167 Sum_probs=155.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+..+...... ..++.++.+|++|++++.++++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFRNADVTNEADATAALAFAKQE 78 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999887655433322 2468899999999998888776
Q ss_pred --CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCC---------CccEEEEecchhhhccCC
Q 020266 81 --GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP---------SIKRVVLTSSMAAVLNTG 140 (328)
Q Consensus 81 --~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~~~~~ 140 (328)
++|++|||||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||.+++.+.+
T Consensus 79 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~ 158 (257)
T 3tpc_A 79 FGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQI 158 (257)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT
T ss_pred cCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCC
Confidence 79999999997532 1224456788999999999999887631 346899999987766321
Q ss_pred CCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHH
Q 020266 141 KPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI 217 (328)
Q Consensus 141 ~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~ 217 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.|.++...... .......
T Consensus 159 ----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~----~~~~~~~ 212 (257)
T 3tpc_A 159 ----------------------GQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMP----QDVQDAL 212 (257)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC-----------------
T ss_pred ----------------------CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCC----HHHHHHH
Confidence 1355999999999999999887 6899999999999998543211 1111111
Q ss_pred hCCCCCCCCC-ccceeHHHHHHHHHHhhcCCCCCC-cEEEec
Q 020266 218 KGAQTYPNVT-FGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (328)
Q Consensus 218 ~~~~~~~~~~-~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~ 257 (328)
... ... ..+.+++|+|+++++++......| .+++.+
T Consensus 213 ~~~----~p~~~r~~~~~dva~~v~~l~s~~~itG~~i~vdG 250 (257)
T 3tpc_A 213 AAS----VPFPPRLGRAEEYAALVKHICENTMLNGEVIRLDG 250 (257)
T ss_dssp -CC----SSSSCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred Hhc----CCCCCCCCCHHHHHHHHHHHcccCCcCCcEEEECC
Confidence 111 111 358899999999999998765677 445544
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-28 Score=199.16 Aligned_cols=194 Identities=17% Similarity=0.135 Sum_probs=150.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---CccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~vi 86 (328)
|+|+||||+|+||++++++|+++ +|++++|++.+...+.... . . .++.+|++|++++.++++ ++|+||
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~---~---~-~~~~~D~~~~~~~~~~~~~~~~id~vi 71 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREV---G---A-RALPADLADELEAKALLEEAGPLDLLV 71 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHH---T---C-EECCCCTTSHHHHHHHHHHHCSEEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhc---c---C-cEEEeeCCCHHHHHHHHHhcCCCCEEE
Confidence 57999999999999999999998 9999999765444332221 1 1 788999999999999888 899999
Q ss_pred EccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 87 HTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 87 h~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
|+||.... ...+.+...+++|+.++.++++++++. +.++||++||.+++.+.+
T Consensus 72 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~~~~~~~~--------------------- 129 (207)
T 2yut_A 72 HAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAYPRYVQVP--------------------- 129 (207)
T ss_dssp ECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCCHHHHSST---------------------
T ss_pred ECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcChhhccCCC---------------------
Confidence 99996432 234456678999999999999999765 678999999987654211
Q ss_pred cCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHH
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 238 (328)
+.+.|+.+|.+.|.+++.++.+ +|++++++||+.++++.... . +...+.+++++|+|+
T Consensus 130 -~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~~-------------~-----~~~~~~~~~~~dva~ 190 (207)
T 2yut_A 130 -GFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAP-------------L-----GGPPKGALSPEEAAR 190 (207)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGGG-------------G-----TSCCTTCBCHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCccc-------------c-----CCCCCCCCCHHHHHH
Confidence 2356999999999999999887 59999999999999875110 1 123467999999999
Q ss_pred HHHHhhcCCCCCCcE
Q 020266 239 AHIQAFEVPSANGRY 253 (328)
Q Consensus 239 ~~~~~~~~~~~~g~~ 253 (328)
+++.++.++....++
T Consensus 191 ~~~~~~~~~~~~~~~ 205 (207)
T 2yut_A 191 KVLEGLFREPVPALL 205 (207)
T ss_dssp HHHHHHC--CCCSCC
T ss_pred HHHHHHhCCCCcccc
Confidence 999999877554443
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-27 Score=203.36 Aligned_cols=229 Identities=17% Similarity=0.082 Sum_probs=163.1
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---C
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---G 81 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~ 81 (328)
..+++|+++||||+|+||++++++|+++|++|++++|+.++.......+ ..++.++.+|++|++++.++++ +
T Consensus 12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~~ 86 (291)
T 3rd5_A 12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVSG 86 (291)
T ss_dssp CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCCC
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcCC
Confidence 3556899999999999999999999999999999999876554433221 3578999999999999998887 5
Q ss_pred ccEEEEccCCCCC---CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020266 82 CDGVCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (328)
Q Consensus 82 ~d~vih~a~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 158 (328)
+|+||||||.... ...+.++..+++|+.|+.++++++.+. ..++||++||.+.+.+... ......+..+..
T Consensus 87 iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-~~~riv~isS~~~~~~~~~---~~~~~~~~~~~~-- 160 (291)
T 3rd5_A 87 ADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPR-LTDRVVTVSSMAHWPGRIN---LEDLNWRSRRYS-- 160 (291)
T ss_dssp EEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGG-EEEEEEEECCGGGTTCCCC---SSCTTCSSSCCC--
T ss_pred CCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhheeEeechhhccCCCC---cccccccccCCC--
Confidence 7999999997432 234556688999999999999999997 5679999999876653221 111111212222
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHhc---C--ccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeH
Q 020266 159 VCKQSELWYPLSKTLAEDAAWKFAKEK---S--IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233 (328)
Q Consensus 159 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 233 (328)
+...|+.||.+.+.+++.++.++ + +++++++||.|.++......... ....... ...+-..++
T Consensus 161 ----~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~----~~~~~~~----~~~~~~~~~ 228 (291)
T 3rd5_A 161 ----PWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKL----GDALMSA----ATRVVATDA 228 (291)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC----------------------------CHHH
T ss_pred ----CcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHH----HHHHHHH----HHHHHhCCH
Confidence 23569999999999999998875 4 99999999999887543211111 1111100 011223469
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEe
Q 020266 234 KDVANAHIQAFEVPSANGRYCLV 256 (328)
Q Consensus 234 ~D~a~~~~~~~~~~~~~g~~~~~ 256 (328)
+|+|+++++++..+...|.|...
T Consensus 229 ~~~A~~~~~l~~~~~~~G~~~~v 251 (291)
T 3rd5_A 229 DFGARQTLYAASQDLPGDSFVGP 251 (291)
T ss_dssp HHHHHHHHHHHHSCCCTTCEEEE
T ss_pred HHHHHHHHHHHcCCCCCCceeCC
Confidence 99999999999887667766544
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=204.18 Aligned_cols=224 Identities=17% Similarity=0.151 Sum_probs=161.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+... ...++.++.+|++|++++.++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEK-FGVRVLEVAVDVATPEGVDAVVESVRSSF 83 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HCCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56889999999999999999999999999999999865544433222111 02468899999999998888776
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 152 (263)
T 3ai3_A 84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLW----------- 152 (263)
T ss_dssp SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCC-----------
Confidence 78999999997432 123345678899999999999887542 1457999999976554211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCc--------chHHHHHHHHhCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLIKGA 220 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~--------~~~~~~~~~~~~~ 220 (328)
....|+.||.+.+.+++.++.+ +|++++++|||.+++|....... .............
T Consensus 153 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (263)
T 3ai3_A 153 -----------YEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH 221 (263)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH
T ss_pred -----------CcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC
Confidence 1245999999999999999887 58999999999999984221000 0111122222210
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.....+++++|+|+++++++..+. ..| .|++.+
T Consensus 222 ----~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdg 257 (263)
T 3ai3_A 222 ----APIKRFASPEELANFFVFLCSERATYSVGSAYFVDG 257 (263)
T ss_dssp ----CTTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEEST
T ss_pred ----CCCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECC
Confidence 123468999999999999987643 246 666655
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=199.86 Aligned_cols=218 Identities=18% Similarity=0.117 Sum_probs=159.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Cc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 82 (328)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++.+.+... . .+++++.+|++|++++.++++ ++
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~---~---~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE---C---PGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---S---TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---c---CCCCEEEEeCCCHHHHHHHHHHcCCC
Confidence 35689999999999999999999999999999999986544332221 1 246778999999999998886 58
Q ss_pred cEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---C-ccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|+|||+||.... ...+.+...+++|+.++.++++++.+.. + .++||++||.+++.+.+
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 144 (244)
T 3d3w_A 78 DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT------------- 144 (244)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT-------------
T ss_pred CEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCC-------------
Confidence 999999996432 1223455789999999999998876531 3 57899999976543110
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
+.+.|+.||.+.|.+++.++.+ .+++++++|||.++++....... ..........+. ....+
T Consensus 145 ---------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~-----~~~~~ 209 (244)
T 3d3w_A 145 ---------NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS-DPHKAKTMLNRI-----PLGKF 209 (244)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSC-STTHHHHHHHTC-----TTCSC
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhcc-ChHHHHHHHhhC-----CCCCC
Confidence 1256999999999999999876 48999999999999985321000 001222333322 23468
Q ss_pred eeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 231 VNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
++++|+|++++.++.+. ...| .|++.+
T Consensus 210 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 239 (244)
T 3d3w_A 210 AEVEHVVNAILFLLSDRSGMTTGSTLPVEG 239 (244)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence 99999999999999754 2346 667765
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=201.40 Aligned_cols=223 Identities=19% Similarity=0.192 Sum_probs=166.4
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|..+++|+++||||+|+||+++++.|+++|++|++++|+.++.+.....+.... ..++.++.+|++|++++.++++
T Consensus 5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (262)
T 3pk0_A 5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAV 83 (262)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 445678999999999999999999999999999999998766555444333221 2578999999999998887775
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhh-ccCCCCCCCCc
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAV-LNTGKPRTPDV 147 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~-~~~~~~~~~~~ 147 (328)
++|++|||||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||.++. .+.+
T Consensus 84 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------- 156 (262)
T 3pk0_A 84 EEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYP------- 156 (262)
T ss_dssp HHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCCT-------
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCC-------
Confidence 79999999997432 2233455778999999999999877641 45799999997653 3111
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.+.+|..... ............+
T Consensus 157 ---------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~p--- 215 (262)
T 3pk0_A 157 ---------------GWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLEN---GEEYIASMARSIP--- 215 (262)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTT---CHHHHHHHHTTST---
T ss_pred ---------------CChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccccc---CHHHHHHHHhcCC---
Confidence 2356999999999999999987 589999999999999843221 1233333333322
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++.... ..| .+++.+
T Consensus 216 --~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdG 249 (262)
T 3pk0_A 216 --AGALGTPEDIGHLAAFLATKEAGYITGQAIAVDG 249 (262)
T ss_dssp --TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCcCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence 2347899999999999987542 356 556654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=199.09 Aligned_cols=228 Identities=15% Similarity=0.095 Sum_probs=163.2
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV- 79 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~- 79 (328)
|+....+++|+++||||+|+||++++++|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.+++
T Consensus 1 m~~~~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~ 78 (260)
T 2ae2_A 1 MAGRWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMN 78 (260)
T ss_dssp -CCTTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHH
Confidence 55544567899999999999999999999999999999999866544433322221 346889999999999888777
Q ss_pred -------CCccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCC
Q 020266 80 -------DGCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 80 -------~~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
.++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 79 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---- 154 (260)
T 2ae2_A 79 TVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVP---- 154 (260)
T ss_dssp HHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCT----
T ss_pred HHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCC----
Confidence 469999999996432 223345578899999999999988532 1567999999976544211
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC--CcchHHHHHHHHhC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT--LNTSAAAVLSLIKG 219 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~ 219 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++..... .......+......
T Consensus 155 ------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~ 216 (260)
T 2ae2_A 155 ------------------YEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDR 216 (260)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHT
T ss_pred ------------------CcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhc
Confidence 12459999999999999998875 89999999999988732110 00011111123332
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
. ....+++++|+|+++++++.... ..| .+++.+
T Consensus 217 ~-----~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdg 252 (260)
T 2ae2_A 217 C-----ALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDG 252 (260)
T ss_dssp S-----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred C-----CCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence 2 23458899999999999987532 356 556554
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=203.11 Aligned_cols=220 Identities=13% Similarity=0.101 Sum_probs=146.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh------
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV------ 79 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~------ 79 (328)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.+++
T Consensus 11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (266)
T 1xq1_A 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTVSSM 88 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999865544433322221 346889999999998888776
Q ss_pred --CCccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCcc
Q 020266 80 --DGCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 80 --~~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.++|+||||||.... ...+.+...+++|+.++.++++++. +. +.++||++||.+++.+.+
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~~~~-------- 159 (266)
T 1xq1_A 89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFMSSIAGVVSAS-------- 159 (266)
T ss_dssp HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEEC-----------------
T ss_pred hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEccchhccCCC--------
Confidence 468999999996432 1233455778999999999999884 33 567999999976554211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
..+.|+.+|.+.+.+++.++.+. |++++++|||.+++|...... ...+........
T Consensus 160 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~----- 218 (266)
T 1xq1_A 160 --------------VGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY--DDEFKKVVISRK----- 218 (266)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC---------------------------
T ss_pred --------------CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc--CHHHHHHHHhcC-----
Confidence 12459999999999999998874 899999999999998643211 001111111111
Q ss_pred CCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
....+++++|+|++++.++... ...| .+++.+
T Consensus 219 ~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 253 (266)
T 1xq1_A 219 PLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDG 253 (266)
T ss_dssp -----CCGGGGHHHHHHHTSGGGTTCCSCEEECCC
T ss_pred CCCCCcCHHHHHHHHHHHcCccccCccCcEEEEcC
Confidence 1234789999999999998753 2345 566654
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=204.63 Aligned_cols=222 Identities=19% Similarity=0.135 Sum_probs=157.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccC-----CCCcEEEEEccCCCcCchHHhhC
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-----ASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++...+...+.... ...++.++.+|++|++++.++++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 83 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE 83 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence 3568899999999999999999999999999999998655444332221111 01468899999999998887776
Q ss_pred C-------c-cEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---C-ccEEEEecchhhhccCCCCC
Q 020266 81 G-------C-DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPR 143 (328)
Q Consensus 81 ~-------~-d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~ 143 (328)
. + |+||||||.... ...+.+...+++|+.++.++++++.+.. + .++||++||.++.++.+
T Consensus 84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--- 160 (264)
T 2pd6_A 84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNV--- 160 (264)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCT---
T ss_pred HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCC---
Confidence 3 4 999999997432 1233456789999999999999887641 2 46899999987665321
Q ss_pred CCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC
Q 020266 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (328)
Q Consensus 144 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~ 220 (328)
+...|+.+|.+.+.+++.++.+ +|++++++|||.+++|...... .........+
T Consensus 161 -------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~- 217 (264)
T 2pd6_A 161 -------------------GQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVP---QKVVDKITEM- 217 (264)
T ss_dssp -------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-------------CTGGG-
T ss_pred -------------------CChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcC---HHHHHHHHHh-
Confidence 1255999999999999999887 6899999999999998643210 1111111111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.....+++++|+|++++.++.... ..| .+++.+
T Consensus 218 ----~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 253 (264)
T 2pd6_A 218 ----IPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTG 253 (264)
T ss_dssp ----CTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ----CCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECC
Confidence 112357899999999999987532 345 556655
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=201.38 Aligned_cols=230 Identities=18% Similarity=0.141 Sum_probs=163.3
Q ss_pred ccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC---------hhhhhhhhhcc-CCCCcEEEEEccCCCc
Q 020266 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND---------PKKTRHLLALD-GASERLQLFKANLLEE 72 (328)
Q Consensus 3 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~~~-~~~~~~~~~~~Dl~~~ 72 (328)
.|..+++|+++||||+|+||+++++.|+++|++|++++|++.. .+.+....... ....++.++.+|++|+
T Consensus 4 ~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 83 (281)
T 3s55_A 4 SMADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDR 83 (281)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence 3556778999999999999999999999999999999997432 22222221111 1235789999999999
Q ss_pred CchHHhhC-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhc
Q 020266 73 GSFDSIVD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVL 137 (328)
Q Consensus 73 ~~~~~~~~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~ 137 (328)
+++.++++ ++|++|||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 163 (281)
T 3s55_A 84 AALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS 163 (281)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC
Confidence 98888776 78999999997432 233445678899999999999986542 1457899999976554
Q ss_pred cCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC--------
Q 020266 138 NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-------- 206 (328)
Q Consensus 138 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-------- 206 (328)
+.+ ....|+.||.+.+.+++.++.+ +|+++++++||.|++|......
T Consensus 164 ~~~----------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~ 221 (281)
T 3s55_A 164 ANF----------------------AQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPD 221 (281)
T ss_dssp CCT----------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC----
T ss_pred CCC----------------------CCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhcccccc
Confidence 211 1245999999999999999986 4899999999999998643210
Q ss_pred --cchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 207 --NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 207 --~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.............. ......+.+++|+|+++++++.... ..| .+++.+
T Consensus 222 ~~~~~~~~~~~~~~~~---~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdg 274 (281)
T 3s55_A 222 LEKPTLKDVESVFASL---HLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDA 274 (281)
T ss_dssp ---CCHHHHHHHHHHH---CSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ccccchhHHHHHHHhh---hccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECC
Confidence 00001111111110 1223678999999999999998643 346 666654
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=202.43 Aligned_cols=222 Identities=17% Similarity=0.097 Sum_probs=160.2
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|+++||||+|+||++++++|+++|++|++++|+.++...+...+ ..++.++.+|++|++++.++++
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~d~~~v~~~~~~~~~ 82 (263)
T 3ak4_A 8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL-----ENGGFAVEVDVTKRASVDAAMQKAID 82 (263)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----TTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hcCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999999865443322221 1267889999999999888776
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---C-ccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. + .++||++||.++..+.+
T Consensus 83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 154 (263)
T 3ak4_A 83 ALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAP-------- 154 (263)
T ss_dssp HHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCT--------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCC--------
Confidence 79999999996432 1223456788999999999998876531 3 57999999976544211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc----c----hHHHHHHHH
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN----T----SAAAVLSLI 217 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~----~----~~~~~~~~~ 217 (328)
....|+.||.+.+.+++.++.+. |++++++|||.+++|....... . .........
T Consensus 155 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (263)
T 3ak4_A 155 --------------LLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYV 220 (263)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred --------------CchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHH
Confidence 12459999999999999998874 8999999999999874211000 0 011112222
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEecC
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVER 258 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~~ 258 (328)
... ....+++++|+|+++++++..+ ...| .+++.++
T Consensus 221 ~~~-----p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 259 (263)
T 3ak4_A 221 SLT-----PLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGG 259 (263)
T ss_dssp HTC-----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred hcC-----CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcC
Confidence 221 2345899999999999998754 2356 6666543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=201.43 Aligned_cols=231 Identities=17% Similarity=0.156 Sum_probs=162.5
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC----------Chhhhhhhhhc-cCCCCcEEEEEccCCCc
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN----------DPKKTRHLLAL-DGASERLQLFKANLLEE 72 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~ 72 (328)
|..+++|+++||||+|+||+++++.|+++|++|++++|+.. ..+.+...... .....++.++.+|++|+
T Consensus 10 ~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 89 (280)
T 3pgx_A 10 AGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDD 89 (280)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 45567899999999999999999999999999999998422 22222222111 12245789999999999
Q ss_pred CchHHhhC-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhh
Q 020266 73 GSFDSIVD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAV 136 (328)
Q Consensus 73 ~~~~~~~~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~ 136 (328)
+++.++++ ++|+||||||.... ...+.+...+++|+.++.++++++.+. +..++||++||.++.
T Consensus 90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 169 (280)
T 3pgx_A 90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGL 169 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhc
Confidence 98888775 78999999997432 233455678899999999999987553 124689999998765
Q ss_pred ccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHH
Q 020266 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAV 213 (328)
Q Consensus 137 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~ 213 (328)
.+.+ ....|+.||.+.+.+++.++.+ +|+++++++||.+.+|..... .....+
T Consensus 170 ~~~~----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~ 225 (280)
T 3pgx_A 170 KATP----------------------GNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPE--AMMEIF 225 (280)
T ss_dssp SCCT----------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHH--HHHHHH
T ss_pred cCCC----------------------CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchh--hhhhhh
Confidence 5211 1255999999999999999887 589999999999999864321 011111
Q ss_pred HHH---HhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 214 LSL---IKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 214 ~~~---~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
... ....+..+.....+.+++|+|+++++++.... ..| .+++.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 276 (280)
T 3pgx_A 226 ARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKG 276 (280)
T ss_dssp HHCGGGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTT
T ss_pred hcCchhhhhhhhcccCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 110 00001112222248999999999999987543 356 5565544
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=198.72 Aligned_cols=224 Identities=13% Similarity=0.070 Sum_probs=162.6
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|++|||||+|+||+++++.|+++|++|++++|+.++...+...+.. ...++.++.+|++|++++.++++
T Consensus 2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (257)
T 3imf_A 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ--FPGQILTVQMDVRNTDDIQKMIEQIDE 79 (257)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--STTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999987765554443322 23578999999999998887775
Q ss_pred ---CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||... ....+.+...+++|+.++.++++++.+. .+.+++|++||..+..+.+
T Consensus 80 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 151 (257)
T 3imf_A 80 KFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGP-------- 151 (257)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCT--------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCC--------
Confidence 6899999999632 2233456678999999999999988432 2457899999976554211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+++.++.+ +|+++++|+||.+.++....................
T Consensus 152 --------------~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~---- 213 (257)
T 3imf_A 152 --------------GVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSV---- 213 (257)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTS----
T ss_pred --------------CcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcC----
Confidence 1245999999999999988864 389999999999998854321100001111122211
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....+.+++|+|+++++++.... ..| .+++.+
T Consensus 214 -p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 248 (257)
T 3imf_A 214 -PLGRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDG 248 (257)
T ss_dssp -TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -CCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence 22358899999999999987543 356 555554
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=200.37 Aligned_cols=222 Identities=17% Similarity=0.071 Sum_probs=159.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.++++
T Consensus 11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (260)
T 2zat_A 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE--GLSVTGTVCHVGKAEDRERLVAMAVNL 88 (260)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999875544433222211 3468899999999998887775
Q ss_pred --CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||... ....+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 159 (260)
T 2zat_A 89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFP--------- 159 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT---------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCCC---------
Confidence 7999999999632 1223345678899999999999887532 1567999999976554211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|.+.+.+++.++.+. |+++++++||.+.++....... ........... ..
T Consensus 160 -------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~-----~~ 220 (260)
T 2zat_A 160 -------------NLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWM-DKARKEYMKES-----LR 220 (260)
T ss_dssp -------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHS-SHHHHHHHHHH-----HT
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhccc-ChHHHHHHHhc-----CC
Confidence 12569999999999999998874 8999999999999875321000 00111111111 11
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++..+. ..| .+++.+
T Consensus 221 ~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdg 254 (260)
T 2zat_A 221 IRRLGNPEDCAGIVSFLCSEDASYITGETVVVGG 254 (260)
T ss_dssp CSSCBCGGGGHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred CCCCCCHHHHHHHHHHHcCcccCCccCCEEEECC
Confidence 2458899999999999987543 255 677765
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=203.06 Aligned_cols=226 Identities=16% Similarity=0.084 Sum_probs=165.4
Q ss_pred ccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 3 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
+|..+++|++|||||+|+||+++++.|+++|++|++++|+.+....+...+.. ...++.++.+|++|++++.++++
T Consensus 2 ~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 79 (280)
T 3tox_A 2 VMSRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG--GGGEAAALAGDVGDEALHEALVELA 79 (280)
T ss_dssp --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTT--TTCCEEECCCCTTCHHHHHHHHHHH
T ss_pred CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHH
Confidence 35557789999999999999999999999999999999987665554443322 23578999999999998887775
Q ss_pred -----CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhh-ccCCCCCCC
Q 020266 81 -----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAV-LNTGKPRTP 145 (328)
Q Consensus 81 -----~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~-~~~~~~~~~ 145 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+. .+.+++|++||..++ .+.+
T Consensus 80 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 154 (280)
T 3tox_A 80 VRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFA----- 154 (280)
T ss_dssp HHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCCT-----
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCCC-----
Confidence 78999999996421 233446688999999999999987653 144699999997654 2110
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC-cchHHHHHHHHhCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL-NTSAAAVLSLIKGAQ 221 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~ 221 (328)
....|+.||.+.+.+++.++.++ |+++++|+||.+.+|...... ..............
T Consensus 155 -----------------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~- 216 (280)
T 3tox_A 155 -----------------GVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLH- 216 (280)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTS-
T ss_pred -----------------CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccC-
Confidence 13559999999999999998875 899999999999998543211 01112222222221
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....+.+++|+|+++++++.... ..| .+++.+
T Consensus 217 ----p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdG 251 (280)
T 3tox_A 217 ----ALKRIARPEEIAEAALYLASDGASFVTGAALLADG 251 (280)
T ss_dssp ----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ----ccCCCcCHHHHHHHHHHHhCccccCCcCcEEEECC
Confidence 23458899999999999997642 356 556654
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=211.45 Aligned_cols=217 Identities=15% Similarity=0.108 Sum_probs=157.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
+++|+||||||+||++++++|+++|++|++++|+.. ....+..+. ..+++++.+|++|++++.++++++|+|||
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~-----~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQ-----SLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHH-----HTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhh-----cCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 468999999999999999999999999999999875 322222111 13689999999999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
+|+... +.++.+++++|++. + +++||+ |+ +|.. .+|..+..|. .+.
T Consensus 86 ~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~----~g~~--------~~~~~~~~p~-----~~~ 132 (318)
T 2r6j_A 86 ALAFPQ--------------ILDQFKILEAIKVA-GNIKRFLP-SD----FGVE--------EDRINALPPF-----EAL 132 (318)
T ss_dssp CCCGGG--------------STTHHHHHHHHHHH-CCCCEEEC-SC----CSSC--------TTTCCCCHHH-----HHH
T ss_pred CCchhh--------------hHHHHHHHHHHHhc-CCCCEEEe-ec----cccC--------cccccCCCCc-----chh
Confidence 998521 34568999999987 5 889884 43 2211 1222222221 245
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CCCCccceeHHHHHHHHHH
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~~~~~ 242 (328)
| .+|..+|.+++. .+++++++||+.+++.. ...++.....+.+ .+ ++..++|++++|++++++.
T Consensus 133 y-~sK~~~e~~~~~----~~~~~~~lr~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~ 200 (318)
T 2r6j_A 133 I-ERKRMIRRAIEE----ANIPYTYVSANCFASYF-------INYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIK 200 (318)
T ss_dssp H-HHHHHHHHHHHH----TTCCBEEEECCEEHHHH-------HHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHh----cCCCeEEEEcceehhhh-------hhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHH
Confidence 8 999999998854 58999999999877641 1111111112221 22 4667899999999999999
Q ss_pred hhcCCCCCC-cEEEe--cCccCHHHHHHHHHHhCCC
Q 020266 243 AFEVPSANG-RYCLV--ERVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 243 ~~~~~~~~g-~~~~~--~~~~~~~el~~~i~~~~~~ 275 (328)
++.++...+ .|++. ++.+|+.|+++.+.+.+|.
T Consensus 201 ~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 236 (318)
T 2r6j_A 201 VATDPRALNRVVIYRPSTNIITQLELISRWEKKIGK 236 (318)
T ss_dssp HTTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred HhcCccccCeEEEecCCCCccCHHHHHHHHHHHhCC
Confidence 998865434 66664 3789999999999999874
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=200.68 Aligned_cols=221 Identities=12% Similarity=0.083 Sum_probs=158.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcE-EEEEccCCCcCchHHhh------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERL-QLFKANLLEEGSFDSIV------ 79 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~------ 79 (328)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+...+ ..++ .++.+|++|++++.+++
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL-----GAAVAARIVADVTDAEAMTAAAAEAEAV 83 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cccceeEEEEecCCHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999865544332222 2356 88999999999888776
Q ss_pred CCccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 80 DGCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 80 ~~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.++|+||||||..... ..+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 84 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------- 152 (254)
T 2wsb_A 84 APVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNR----------- 152 (254)
T ss_dssp SCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCS-----------
T ss_pred CCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCC-----------
Confidence 4789999999974321 12234577889999988887766432 1467999999976554211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
.. +.+.|+.+|.+.|.+++.++.+. |++++++|||.++++..... ..............+ ..
T Consensus 153 ---~~------~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~-----~~ 217 (254)
T 2wsb_A 153 ---PQ------FASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKM-RERPELFETWLDMTP-----MG 217 (254)
T ss_dssp ---SS------CBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHH-HTCHHHHHHHHHTST-----TS
T ss_pred ---CC------cchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcc-ccChHHHHHHHhcCC-----CC
Confidence 01 12559999999999999998875 89999999999999742210 001122333333322 24
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCC-cEEEecC
Q 020266 229 GWVNVKDVANAHIQAFEVP--SANG-RYCLVER 258 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~~ 258 (328)
.+++++|+|++++.++... ...| .+++.++
T Consensus 218 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 250 (254)
T 2wsb_A 218 RCGEPSEIAAAALFLASPAASYVTGAILAVDGG 250 (254)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 5899999999999998753 2356 5566544
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=196.68 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=152.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|+|+||||+|+||++++++|+++|++|+++ .|++.....+...+... ..++.++.+|++|++++.++++
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPEDVENMVKTAMDA 80 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999 55655444433332221 3578999999999998887776
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++.++.+
T Consensus 81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 150 (247)
T 2hq1_A 81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNA---------- 150 (247)
T ss_dssp HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCC----------
Confidence 78999999987432 233455688999999999998887652 1457999999976666321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.|.+++.++.+. ++++++++||.+.++..... ..........+. ..
T Consensus 151 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~-----~~ 210 (247)
T 2hq1_A 151 ------------GQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVL---PDKVKEMYLNNI-----PL 210 (247)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHTTS-----TT
T ss_pred ------------CCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhc---chHHHHHHHhhC-----CC
Confidence 12559999999999999998764 89999999999987632211 112222233322 23
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
..+++++|+|+++..++..+. ..| .|++.++
T Consensus 211 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 244 (247)
T 2hq1_A 211 KRFGTPEEVANVVGFLASDDSNYITGQVINIDGG 244 (247)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHcCcccccccCcEEEeCCC
Confidence 458899999999999887532 345 7777653
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=199.04 Aligned_cols=224 Identities=16% Similarity=0.096 Sum_probs=163.8
Q ss_pred ccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 3 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
.|..+++|+++||||+|+||+++++.|+++|++|++++|+.+....+.... ..++.++.+|++|++++.++++
T Consensus 2 ~m~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (255)
T 4eso_A 2 VMGNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAA 76 (255)
T ss_dssp --CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999876554443332 2478999999999998877664
Q ss_pred -----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 -----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 -----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|++|||||.... ...+.+...+++|+.++.++++++.+.. ..+++|++||.++..+.+
T Consensus 77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 147 (255)
T 4eso_A 77 GQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHP--------- 147 (255)
T ss_dssp HHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBCT---------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCCC---------
Confidence 68999999997432 2334456789999999999999998752 235899999986554211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC-c-chHHHHHHHHhCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL-N-TSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~-~~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+.+.++.+. |+++++++||.+.+|...... . .....+.......
T Consensus 148 -------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~---- 210 (255)
T 4eso_A 148 -------------GMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNI---- 210 (255)
T ss_dssp -------------TBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHH----
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhcc----
Confidence 23569999999999999998875 899999999999998543211 1 1111111111111
Q ss_pred CCCccceeHHHHHHHHHHhhcC-CCCCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEV-PSANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~-~~~~g-~~~~~~ 257 (328)
.....+.+++|+|+++++++.. ....| .+++.+
T Consensus 211 ~p~~r~~~pedvA~~v~~L~s~~~~itG~~i~vdG 245 (255)
T 4eso_A 211 TPMKRNGTADEVARAVLFLAFEATFTTGAKLAVDG 245 (255)
T ss_dssp STTSSCBCHHHHHHHHHHHHHTCTTCCSCEEEEST
T ss_pred CCCCCCcCHHHHHHHHHHHcCcCcCccCCEEEECC
Confidence 1234577999999999998875 22356 556654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=198.38 Aligned_cols=223 Identities=13% Similarity=0.066 Sum_probs=161.4
Q ss_pred cccCCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-
Q 020266 4 VAAAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
|..+++|+++||||+ |+||+++++.|+++|++|++++|+......+..+.... ....++.+|++|++++.++++
T Consensus 4 m~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T 1qsg_A 4 MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAE 80 (265)
T ss_dssp -CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhc---CCcEEEEccCCCHHHHHHHHHH
Confidence 334668999999999 99999999999999999999999873222222222211 234788999999998887775
Q ss_pred ------CccEEEEccCCCCC----------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCC
Q 020266 81 ------GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPR 143 (328)
Q Consensus 81 ------~~d~vih~a~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~ 143 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. ..++||++||.+++.+.+
T Consensus 81 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~--- 157 (265)
T 1qsg_A 81 LGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIP--- 157 (265)
T ss_dssp HHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT---
T ss_pred HHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCCC---
Confidence 68999999997542 2334456789999999999999998762 125899999976554211
Q ss_pred CCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC
Q 020266 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (328)
Q Consensus 144 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~ 220 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.+|..... ............+.
T Consensus 158 -------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~ 217 (265)
T 1qsg_A 158 -------------------NYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-KDFRKMLAHCEAVT 217 (265)
T ss_dssp -------------------TTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-TTHHHHHHHHHHHS
T ss_pred -------------------CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcc-cccHHHHHHHHhcC
Confidence 12459999999999999998875 89999999999999854321 11223333333322
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
+ ...+.+++|+|+++++++.... ..| .+++.+
T Consensus 218 p-----~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdg 252 (265)
T 1qsg_A 218 P-----IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDG 252 (265)
T ss_dssp T-----TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred C-----CCCCCCHHHHHHHHHHHhCchhcCccCCEEEECC
Confidence 2 2347899999999999987532 246 566654
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=197.14 Aligned_cols=221 Identities=17% Similarity=0.139 Sum_probs=160.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+++||||+|+||++++++|+++|++|++++|+.++...+..... .....++.++.+|++|++++.++++ +
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHW-HAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHS-TTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999999998655443322220 1113478999999999998888776 7
Q ss_pred ccEEEEccCCCCCC--------CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 82 CDGVCHTASPFYHD--------AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 82 ~d~vih~a~~~~~~--------~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
+|+||||||..... ..+.+...+++|+.++.++++++.+. .+.+++|++||.+++++.+
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 150 (250)
T 2cfc_A 81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFP---------- 150 (250)
T ss_dssp CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCC----------
Confidence 99999999974321 12345578899999998887766542 1457999999986655211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
..+.|+.+|.+.+.+++.++.+. |++++++|||.+++|....... ...+......+.+ .
T Consensus 151 ------------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~-----~ 212 (250)
T 2cfc_A 151 ------------GRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLD-QPELRDQVLARIP-----Q 212 (250)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHT-SHHHHHHHHTTCT-----T
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccC-CHHHHHHHHhcCC-----C
Confidence 12559999999999999998775 8999999999999986431000 1122233333222 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
..+.+++|+|++++.++..+. ..| .+++.++
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 246 (250)
T 2cfc_A 213 KEIGTAAQVADAVMFLAGEDATYVNGAALVMDGA 246 (250)
T ss_dssp CSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHcCchhhcccCCEEEECCc
Confidence 358899999999999998643 246 5555543
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=208.77 Aligned_cols=229 Identities=19% Similarity=0.232 Sum_probs=162.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh--hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+|+|+|||||||||++++++|+++|++|++++|+.... .....+... ...+++++.+|++|++++.++++++|+||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~l~~~~~~~d~vi 81 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYF--KQLGAKLIEASLDDHQRLVDALKQVDVVI 81 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHH--HTTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHH--HhCCeEEEeCCCCCHHHHHHHHhCCCEEE
Confidence 56899999999999999999999999999999986532 121111111 12468999999999999999999999999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
|+++.... ..|+.++.+++++|++. + +++||+ |+ +|.. .... +.+..| ..+
T Consensus 82 ~~a~~~~~----------~~~~~~~~~l~~aa~~~-g~v~~~v~-S~----~g~~----~~~~---~~~~~p-----~~~ 133 (313)
T 1qyd_A 82 SALAGGVL----------SHHILEQLKLVEAIKEA-GNIKRFLP-SE----FGMD----PDIM---EHALQP-----GSI 133 (313)
T ss_dssp ECCCCSSS----------STTTTTHHHHHHHHHHS-CCCSEEEC-SC----CSSC----TTSC---CCCCSS-----TTH
T ss_pred ECCccccc----------hhhHHHHHHHHHHHHhc-CCCceEEe-cC----CcCC----cccc---ccCCCC-----Ccc
Confidence 99986432 12567789999999998 6 899985 43 2211 0000 111111 124
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC--CCC--CCCCccceeHHHHHHHHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTFGWVNVKDVANAHI 241 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~v~v~D~a~~~~ 241 (328)
.| .+|..+|.+++ +.+++++++||+.++|+......... . .....++ ..+ ++..+++++++|+|++++
T Consensus 134 ~y-~sK~~~e~~~~----~~g~~~~ilrp~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~ 205 (313)
T 1qyd_A 134 TF-IDKRKVRRAIE----AASIPYTYVSSNMFAGYFAGSLAQLD-G--HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTI 205 (313)
T ss_dssp HH-HHHHHHHHHHH----HTTCCBCEEECCEEHHHHTTTSSCTT-C--CSSCCSSEECCBTTSCSEEEEECHHHHHHHHH
T ss_pred hH-HHHHHHHHHHH----hcCCCeEEEEeceecccccccccccc-c--cccCCCCeEEEeCCCCceEEEEEHHHHHHHHH
Confidence 58 99999999885 35899999999998885322111000 0 0001122 222 467789999999999999
Q ss_pred HhhcCCCCCC-cEEEe-c-CccCHHHHHHHHHHhCCC
Q 020266 242 QAFEVPSANG-RYCLV-E-RVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 242 ~~~~~~~~~g-~~~~~-~-~~~~~~el~~~i~~~~~~ 275 (328)
.++.++...| .|++. + +.+|+.|+++.+.+.+|.
T Consensus 206 ~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 242 (313)
T 1qyd_A 206 KSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQ 242 (313)
T ss_dssp HHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred HHHhCcccCCceEEEeCCCCccCHHHHHHHHHHhcCC
Confidence 9998875434 66665 3 689999999999999874
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=198.72 Aligned_cols=221 Identities=19% Similarity=0.117 Sum_probs=161.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||++++++|+++|++|++++|+.++...+...+... ...++.++.+|++|++++.++++
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANK-YGVKAHGVEMNLLSEESINKAFEEIYNLV 83 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-HCCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhh-cCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999865544433222110 12468899999999998888776
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++++.+
T Consensus 84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 152 (248)
T 2pnf_A 84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNV----------- 152 (248)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCCT-----------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCCC-----------
Confidence 79999999997432 122345578999999998887766432 1457999999987666321
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+++.++.+. +++++++|||.++++...... ...........+ ..
T Consensus 153 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~-----~~ 213 (248)
T 2pnf_A 153 -----------GQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLS---EEIKQKYKEQIP-----LG 213 (248)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC---HHHHHHHHHTCT-----TS
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhcc---HHHHHHHHhcCC-----CC
Confidence 12459999999999999988763 899999999999998543211 112222222222 24
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCC-cEEEecC
Q 020266 229 GWVNVKDVANAHIQAFEVP--SANG-RYCLVER 258 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~~ 258 (328)
.+++++|+|++++.++... ...| .|++.++
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 214 RFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 5889999999999998753 2345 6777653
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=197.01 Aligned_cols=213 Identities=16% Similarity=0.165 Sum_probs=157.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||++++++|+++|++|++++|+.++...+...+ ..++.++.+|++|++++.++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVTA 78 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----hcCceEEEecCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999865544332222 1247889999999999888876
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 148 (260)
T 1nff_A 79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTV---------- 148 (260)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCCC----------
Confidence 79999999997432 223345678999999998777665432 1457999999986654211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+.+.+++.++.+ +|++++++|||.++++... ... ........
T Consensus 149 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-~~~------------~~~~~~~~ 203 (260)
T 1nff_A 149 ------------ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD-WVP------------EDIFQTAL 203 (260)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT-TSC------------TTCSCCSS
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc-cch------------hhHHhCcc
Confidence 1245999999999999998876 5899999999999998532 100 00001122
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
..+.+++|+|+++++++.... ..| .|++.++
T Consensus 204 ~~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG 237 (260)
T 1nff_A 204 GRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG 237 (260)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 357899999999999987532 246 6666553
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=199.55 Aligned_cols=231 Identities=13% Similarity=0.135 Sum_probs=158.4
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
|..+++|++|||||+|+||+++++.|+++|++|++++|+. +....+...+... ...++.++.+|++|++++.++++
T Consensus 20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGL-SSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp --CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTT-CSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhc-cCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 3456689999999999999999999999999999999953 3333333332221 13578999999999998887775
Q ss_pred -----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 -----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 -----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.++..+.+
T Consensus 99 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 171 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASP------- 171 (281)
T ss_dssp HHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-------
T ss_pred HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCC-------
Confidence 78999999997432 123445678999999999999987432 1457899999987655211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHH----HHHHHhCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAA----VLSLIKGA 220 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~----~~~~~~~~ 220 (328)
....|+.||.+.+.+++.++.++ |+++++++||.+.+|............ ........
T Consensus 172 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (281)
T 3v2h_A 172 ---------------FKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEV 236 (281)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-------------------------
T ss_pred ---------------CchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHH
Confidence 12459999999999999998874 899999999999998543211100000 00000000
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.........+++++|+|+++++++.... ..| .+++.+
T Consensus 237 ~~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdG 276 (281)
T 3v2h_A 237 MLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDG 276 (281)
T ss_dssp ---CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEEST
T ss_pred HHhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECC
Confidence 0002345679999999999999997643 356 555544
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-27 Score=200.92 Aligned_cols=224 Identities=20% Similarity=0.127 Sum_probs=161.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|+|+||||+|+||++++++|+++|++|++++| +.+..+.+...+.. ...++.++.+|++|++++.++++
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 96 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK--LGAQGVAIQADISKPSEVVALFDKAVSH 96 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999 44333332222221 13468899999999998888776
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+... .++||++||.++++...
T Consensus 97 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~------------ 164 (274)
T 1ja9_A 97 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI------------ 164 (274)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC------------
T ss_pred cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCCC------------
Confidence 78999999997432 12233457889999999999998876421 26899999986652110
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCC----CC-----cch-HHHHHHHHhC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQP----TL-----NTS-AAAVLSLIKG 219 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~----~~-----~~~-~~~~~~~~~~ 219 (328)
+ ....|+.+|.+.|.+++.++.++ +++++++|||.++++.... .. ... .........+
T Consensus 165 -~--------~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
T 1ja9_A 165 -P--------NHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM 235 (274)
T ss_dssp -C--------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT
T ss_pred -C--------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhc
Confidence 0 12459999999999999998875 8999999999998863210 00 001 2222233332
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
. ....+++++|+|++++.++..+. ..| .|++.++
T Consensus 236 ~-----~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 236 N-----PLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp S-----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred C-----CCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 2 23568999999999999997643 245 7777654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=198.35 Aligned_cols=221 Identities=14% Similarity=0.066 Sum_probs=164.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+..+.+...+... ..++.++.+|++|++++.++++
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA--GGKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999876655544443322 3578999999999998887775
Q ss_pred --CccEEEEccCCCCC----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 --GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 --~~d~vih~a~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|++|||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 155 (256)
T 3gaf_A 87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNV----------- 155 (256)
T ss_dssp HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCT-----------
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCC-----------
Confidence 78999999997432 223445678999999999999987542 1457999999976554211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.||.+.+.+++.++.++ |+++++++||.+.++...... ............ ...
T Consensus 156 -----------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~-----p~~ 217 (256)
T 3gaf_A 156 -----------RMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVL--TPEIERAMLKHT-----PLG 217 (256)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHC--CHHHHHHHHTTC-----TTS
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhcc--CHHHHHHHHhcC-----CCC
Confidence 13559999999999999998874 899999999999887421100 112223333322 234
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
.+.+++|+|+++++++... ...| .+++.+
T Consensus 218 r~~~~~dva~~~~~L~s~~~~~itG~~i~vdg 249 (256)
T 3gaf_A 218 RLGEAQDIANAALFLCSPAAAWISGQVLTVSG 249 (256)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCHHHHHHHHHHHcCCcccCccCCEEEECC
Confidence 5889999999999998753 2356 666665
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=199.67 Aligned_cols=221 Identities=19% Similarity=0.179 Sum_probs=164.5
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|++|||||+|+||+++++.|+++|++|++++|+.++...+...+.... ..++.++.+|++|++++.++++
T Consensus 37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~ 115 (293)
T 3rih_A 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVD 115 (293)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999998877665544443221 2578999999999988777665
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhh-ccCCCCCCCCc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAV-LNTGKPRTPDV 147 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~-~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++. +. +.++||++||.++. .+.+
T Consensus 116 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iV~isS~~~~~~~~~------- 187 (293)
T 3rih_A 116 AFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS-GRGRVILTSSITGPVTGYP------- 187 (293)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH-SSCEEEEECCSBTTTBBCT-------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEeChhhccCCCC-------
Confidence 67999999997432 2234456789999999999999884 33 45799999997653 3211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.|++|..... ............+
T Consensus 188 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~p--- 246 (293)
T 3rih_A 188 ---------------GWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDM---GEEYISGMARSIP--- 246 (293)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHT---CHHHHHHHHTTST---
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhc---cHHHHHHHHhcCC---
Confidence 1356999999999999999887 489999999999999843211 1223333333322
Q ss_pred CCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
...+..++|+|+++++++... ...| .+++.+
T Consensus 247 --~~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdG 280 (293)
T 3rih_A 247 --MGMLGSPVDIGHLAAFLATDEAGYITGQAIVVDG 280 (293)
T ss_dssp --TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 234678999999999998753 2356 555554
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=197.65 Aligned_cols=225 Identities=14% Similarity=0.082 Sum_probs=163.0
Q ss_pred CcccccCCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 1 MSSVAAAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
|+++. +++|+++||||+ |+||+++++.|+++|++|++++|+.+....+..+.... ..+.++.+|++|++++.++
T Consensus 1 M~~~~-l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~ 76 (261)
T 2wyu_A 1 MLTVD-LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL---GGALLFRADVTQDEELDAL 76 (261)
T ss_dssp CEEEC-CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHT---TCCEEEECCTTCHHHHHHH
T ss_pred CCccC-CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCcEEEECCCCCHHHHHHH
Confidence 54443 568999999999 99999999999999999999999864222222222211 2378899999999988877
Q ss_pred hC-------CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCC
Q 020266 79 VD-------GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGK 141 (328)
Q Consensus 79 ~~-------~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~ 141 (328)
++ ++|+||||||.... ...+.+...+++|+.++.++++++.+... .++||++||.++..+.+
T Consensus 77 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~- 155 (261)
T 2wyu_A 77 FAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVP- 155 (261)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCT-
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCCC-
Confidence 76 68999999997431 22344567899999999999999988621 25899999976544211
Q ss_pred CCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHh
Q 020266 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK 218 (328)
Q Consensus 142 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~ 218 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+++|..... ............
T Consensus 156 ---------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~ 213 (261)
T 2wyu_A 156 ---------------------KYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI-PGFTKMYDRVAQ 213 (261)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGC-TTHHHHHHHHHH
T ss_pred ---------------------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhc-cccHHHHHHHHh
Confidence 12459999999999999998875 89999999999999853321 112223333333
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
..| ...+.+++|+|+++++++.... ..| .+++.+
T Consensus 214 ~~p-----~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdg 250 (261)
T 2wyu_A 214 TAP-----LRRNITQEEVGNLGLFLLSPLASGITGEVVYVDA 250 (261)
T ss_dssp HST-----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCC-----CCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECC
Confidence 222 2347799999999999986432 346 566655
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=195.64 Aligned_cols=221 Identities=16% Similarity=0.161 Sum_probs=158.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCc----CchHHhhC
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEE----GSFDSIVD 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~----~~~~~~~~ 80 (328)
.|++|+++||||+|+||+++++.|+++|++|++++| +.++...+...+... ...++.++.+|++|+ +++.++++
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA-RAGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHh-cCCceEEEeccCCCccccHHHHHHHHH
Confidence 456789999999999999999999999999999999 655444433332211 024688999999999 77777665
Q ss_pred -------CccEEEEccCCCCCC-----CC-----------CcchhhhhHHHHHHHHHHHHHhcCC--Cc------cEEEE
Q 020266 81 -------GCDGVCHTASPFYHD-----AK-----------DPQVELLDPAVKGTLNVLNSCAKFP--SI------KRVVL 129 (328)
Q Consensus 81 -------~~d~vih~a~~~~~~-----~~-----------~~~~~~~~~N~~~~~~l~~~~~~~~--~~------~~~v~ 129 (328)
++|+||||||..... .. +.+...+++|+.++.++++++.+.. +. ++||+
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~ 166 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN 166 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence 789999999964221 12 4455789999999999999998852 23 78999
Q ss_pred ecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC
Q 020266 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL 206 (328)
Q Consensus 130 ~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~ 206 (328)
+||.+++.+.+ ....|+.||.+.+.+++.++.+. |+++++|+||.+.+| .. .
T Consensus 167 isS~~~~~~~~----------------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~--~ 221 (276)
T 1mxh_A 167 LCDAMTDLPLP----------------------GFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PA--M 221 (276)
T ss_dssp ECCGGGGSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SS--S
T ss_pred ECchhhcCCCC----------------------CCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-cc--C
Confidence 99986654211 12459999999999999998875 899999999999998 21 1
Q ss_pred cchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 207 NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
............+ . .+++.+++|+|+++++++.... ..| .+++.++
T Consensus 222 --~~~~~~~~~~~~p---~-~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 270 (276)
T 1mxh_A 222 --PQETQEEYRRKVP---L-GQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG 270 (276)
T ss_dssp --CHHHHHHHHTTCT---T-TSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CHHHHHHHHhcCC---C-CCCCCCHHHHHHHHHHHhCccccCccCcEEEECCc
Confidence 1222333333222 1 1238899999999999987532 256 5555543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=199.66 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=164.6
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
+..+++|+++||||+|+||+++++.|+++|++|++++|+.++.+.+...+... ..++.++++|++|++++.++++
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (264)
T 3ucx_A 6 GGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT--GRRALSVGTDITDDAQVAHLVDETM 83 (264)
T ss_dssp -CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999999876655544443322 3578999999999998887775
Q ss_pred ----CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ----~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|++|||||... ....+.+...+++|+.++.++++++.+.. ..+++|++||.++..+.+
T Consensus 84 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 155 (264)
T 3ucx_A 84 KAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQA-------- 155 (264)
T ss_dssp HHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGCCCT--------
T ss_pred HHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhccCCC--------
Confidence 6899999998642 12234456789999999999999876541 126899999986654211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCc--------chHHHHHHHH
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLI 217 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~--------~~~~~~~~~~ 217 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.|++|....... ..........
T Consensus 156 --------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (264)
T 3ucx_A 156 --------------KYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAA 221 (264)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred --------------ccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHh
Confidence 1245999999999999999887 58999999999999874221000 0111222222
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
.+ .....+.+++|+|+++++++.... ..| .+++.++
T Consensus 222 ~~-----~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 260 (264)
T 3ucx_A 222 AG-----SDLKRLPTEDEVASAILFMASDLASGITGQALDVNCG 260 (264)
T ss_dssp TT-----SSSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cc-----CCcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 22 223468899999999999987532 356 5566543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=199.73 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=162.5
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|..+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.++++
T Consensus 17 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 94 (277)
T 2rhc_B 17 MATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEALVAAVV 94 (277)
T ss_dssp TCCTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHH
Confidence 33466789999999999999999999999999999999875544433332221 2468899999999998887775
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC--C---CccEEEEecchhhhccCCCCCCCC
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF--P---SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~--~---~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. . +.++||++||.++.++.+
T Consensus 95 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~------ 168 (277)
T 2rhc_B 95 ERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVV------ 168 (277)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCT------
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCCC------
Confidence 68999999996432 122345678899999999999998764 1 457999999986654211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcc--h------HHHHHH
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--S------AAAVLS 215 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~--~------~~~~~~ 215 (328)
....|+.+|.+.+.+++.++.+. |+++++|+||.+.++........ . ......
T Consensus 169 ----------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 232 (277)
T 2rhc_B 169 ----------------HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDR 232 (277)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ----------------CCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHH
Confidence 12459999999999999998764 79999999999998742110000 0 011111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
..... ....+++++|+|+++++++..+. ..| .+++.++
T Consensus 233 ~~~~~-----p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG 273 (277)
T 2rhc_B 233 ITARV-----PIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 273 (277)
T ss_dssp HHHHS-----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHhcC-----CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 11111 23458999999999999987542 356 5666553
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=195.47 Aligned_cols=218 Identities=18% Similarity=0.132 Sum_probs=160.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++...+...+ ..++.++.+|++|++++.++++
T Consensus 9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (265)
T 2o23_A 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAKGK 83 (265)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999887765543332 2468999999999998888776
Q ss_pred --CccEEEEccCCCCC-----------CCCCcchhhhhHHHHHHHHHHHHHhcCC---------CccEEEEecchhhhcc
Q 020266 81 --GCDGVCHTASPFYH-----------DAKDPQVELLDPAVKGTLNVLNSCAKFP---------SIKRVVLTSSMAAVLN 138 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~~~ 138 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. +.++||++||.+++.+
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~ 163 (265)
T 2o23_A 84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG 163 (265)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC
T ss_pred CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCC
Confidence 79999999997432 1223455788999999999999887541 3568999999876552
Q ss_pred CCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHH
Q 020266 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLS 215 (328)
Q Consensus 139 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~ 215 (328)
.+ ....|+.+|.+.+.+++.++.+ .++++++++||.+.++...... ......
T Consensus 164 ~~----------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~ 218 (265)
T 2o23_A 164 QV----------------------GQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLP---EKVCNF 218 (265)
T ss_dssp CT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------CH
T ss_pred CC----------------------CCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccC---HHHHHH
Confidence 11 1245999999999999998876 4899999999999887532210 011111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCC-cEEEec
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~ 257 (328)
.....+. ...+++++|+|++++.++.++...| .+++.+
T Consensus 219 ~~~~~~~----~~~~~~~~dva~~~~~l~~~~~~~G~~i~vdg 257 (265)
T 2o23_A 219 LASQVPF----PSRLGDPAEYAHLVQAIIENPFLNGEVIRLDG 257 (265)
T ss_dssp HHHTCSS----SCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred HHHcCCC----cCCCCCHHHHHHHHHHHhhcCccCceEEEECC
Confidence 1121111 1347899999999999998765667 555544
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=199.36 Aligned_cols=226 Identities=15% Similarity=0.131 Sum_probs=161.8
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|+.+..+++|+++||||+|+||+++++.|+++|++|++++|+.. .......+.. ...++.++.+|++|++++.++.+
T Consensus 23 m~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~-~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~ 99 (273)
T 3uf0_A 23 MTGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-VKEVADEIAD--GGGSAEAVVADLADLEGAANVAE 99 (273)
T ss_dssp --CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTH-HHHHHHHHHT--TTCEEEEEECCTTCHHHHHHHHH
T ss_pred cccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHH-HHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHH
Confidence 34444567899999999999999999999999999999997532 2222222211 23578999999999988777654
Q ss_pred ------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCC
Q 020266 81 ------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.+++.+.+
T Consensus 100 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~------ 173 (273)
T 3uf0_A 100 ELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGR------ 173 (273)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCS------
T ss_pred HHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCC------
Confidence 78999999997432 123445678999999999999987442 1457899999987654211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.|.+|..... ..............|
T Consensus 174 ----------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~p-- 234 (273)
T 3uf0_A 174 ----------------NVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAAL-RADDERAAEITARIP-- 234 (273)
T ss_dssp ----------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-HTSHHHHHHHHHHST--
T ss_pred ----------------CChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhc-ccCHHHHHHHHhcCC--
Confidence 1355999999999999999887 589999999999998753210 001122223333222
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++... ...| .+++.+
T Consensus 235 ---~~r~~~pedva~~v~~L~s~~a~~itG~~i~vdG 268 (273)
T 3uf0_A 235 ---AGRWATPEDMVGPAVFLASDAASYVHGQVLAVDG 268 (273)
T ss_dssp ---TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---CCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECc
Confidence 245789999999999998753 2356 556554
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-27 Score=200.58 Aligned_cols=213 Identities=15% Similarity=0.106 Sum_probs=148.6
Q ss_pred ccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 3 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
+|+.+++|+++||||+|+||++++++|+++|++|++++|+.+....+.... ..++.++.+|++|++++.++++
T Consensus 22 ~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~ 96 (272)
T 4dyv_A 22 SMSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-----GDDALCVPTDVTDPDSVRALFTAT 96 (272)
T ss_dssp ------CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----TSCCEEEECCTTSHHHHHHHHHHH
T ss_pred hhcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEecCCCHHHHHHHHHHH
Confidence 455567899999999999999999999999999999999876554433332 2478899999999998888776
Q ss_pred -----CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC---C--ccEEEEecchhhhccCCCCCC
Q 020266 81 -----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---S--IKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 -----~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~~~~v~~SS~~~~~~~~~~~~ 144 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+.. + .++||++||.++..+.+
T Consensus 97 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~---- 172 (272)
T 4dyv_A 97 VEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRP---- 172 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCT----
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCC----
Confidence 79999999997422 2234456889999999999988776541 2 46899999976654211
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++...... ........
T Consensus 173 ------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~----~~~~~~~~--- 227 (272)
T 4dyv_A 173 ------------------YSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMK----AGVPQADL--- 227 (272)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC-----------------------
T ss_pred ------------------CchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhc----ccchhhhh---
Confidence 2355999999999999999887 4899999999999887532211 00000000
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCCCC
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPSANG 251 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g 251 (328)
......+.+++|+|+++++++..+....
T Consensus 228 --~~~~~~~~~pedvA~~v~fL~s~~~~~~ 255 (272)
T 4dyv_A 228 --SIKVEPVMDVAHVASAVVYMASLPLDAN 255 (272)
T ss_dssp ----------CHHHHHHHHHHHHHSCTTSC
T ss_pred --cccccCCCCHHHHHHHHHHHhCCCCcCc
Confidence 1122347899999999999999765533
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-26 Score=194.24 Aligned_cols=220 Identities=15% Similarity=0.077 Sum_probs=162.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
++|++|||||+|+||+++++.|+++|++|+++ .|+.+....+...+.. ...++.++.+|++|++++.++++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEK--LGVKVLVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999987 7776555444433322 23578999999999998887775
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~----------- 149 (258)
T 3oid_A 81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLE----------- 149 (258)
T ss_dssp SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCT-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCC-----------
Confidence 57999999986322 223345578999999999999988542 1457999999976554211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
..+.|+.||.+.+.+++.++.++ |+++++++||.+.++...... .............| ..
T Consensus 150 -----------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~p-----~~ 212 (258)
T 3oid_A 150 -----------NYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFP-NREDLLEDARQNTP-----AG 212 (258)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCT-THHHHHHHHHHHCT-----TS
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcc-cCHHHHHHHHhcCC-----CC
Confidence 23569999999999999999875 899999999999988543221 11223333333222 34
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.+.+++|+|+++++++.... ..| .+++.+
T Consensus 213 r~~~~~dva~~v~~L~s~~~~~itG~~i~vdG 244 (258)
T 3oid_A 213 RMVEIKDMVDTVEFLVSSKADMIRGQTIIVDG 244 (258)
T ss_dssp SCBCHHHHHHHHHHHTSSTTTTCCSCEEEEST
T ss_pred CCcCHHHHHHHHHHHhCcccCCccCCEEEECC
Confidence 58899999999999998643 356 556654
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-26 Score=194.01 Aligned_cols=216 Identities=15% Similarity=0.111 Sum_probs=155.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||++++++|+++|++|++++|+.++ ..+.... . + .++.+|++|++++.++++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~---~---~-~~~~~D~~~~~~~~~~~~~~~~~~ 75 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI---G---G-AFFQVDLEDERERVRFVEEAAYAL 75 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH---T---C-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHh---h---C-CEEEeeCCCHHHHHHHHHHHHHHc
Confidence 557899999999999999999999999999999998765 3332221 1 3 788999999988877765
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 76 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~----------- 144 (256)
T 2d1y_A 76 GRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQ----------- 144 (256)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCT-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCC-----------
Confidence 68999999997432 122345578999999999999887542 2567999999986655211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.||.+.+.+++.++.+. ++++++++||.+.++...... ............ ..
T Consensus 145 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-----~~ 208 (256)
T 2d1y_A 145 -----------ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWED-----LH 208 (256)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHT-----TS
T ss_pred -----------CChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHHHHHHh-----cC
Confidence 12459999999999999998764 899999999999876311000 000000011111 12
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....+++++|+|+++++++..+. ..| .+++.+
T Consensus 209 ~~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~g 243 (256)
T 2d1y_A 209 ALRRLGKPEEVAEAVLFLASEKASFITGAILPVDG 243 (256)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCcCHHHHHHHHHHHhCchhcCCCCCEEEECC
Confidence 23568999999999999987642 356 667665
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=197.43 Aligned_cols=223 Identities=16% Similarity=0.142 Sum_probs=151.4
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecC-CCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
|..+++|+++||||+|+||+++++.|+++|++|++++|+ .+....+...+.. ...++.++++|++|++++.++++
T Consensus 24 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~ 101 (280)
T 4da9_A 24 MTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSG--LGARVIFLRADLADLSSHQATVDAV 101 (280)
T ss_dssp CSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH--TTCCEEEEECCTTSGGGHHHHHHHH
T ss_pred hhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 344568899999999999999999999999999999964 3333333332222 23579999999999999888776
Q ss_pred -----CccEEEEccCCC--CC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---C---ccEEEEecchhhhccCCCC
Q 020266 81 -----GCDGVCHTASPF--YH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S---IKRVVLTSSMAAVLNTGKP 142 (328)
Q Consensus 81 -----~~d~vih~a~~~--~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~---~~~~v~~SS~~~~~~~~~~ 142 (328)
++|+||||||.. .. ...+.+...+++|+.++.++++++.+.. + .++||++||.++..+.+
T Consensus 102 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~-- 179 (280)
T 4da9_A 102 VAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSP-- 179 (280)
T ss_dssp HHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC---------
T ss_pred HHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCC--
Confidence 789999999972 11 2334566889999999999999876541 1 45899999987655311
Q ss_pred CCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhC
Q 020266 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG 219 (328)
Q Consensus 143 ~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~ 219 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++....... ........+
T Consensus 180 --------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~---~~~~~~~~~ 236 (280)
T 4da9_A 180 --------------------ERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSG---KYDGLIESG 236 (280)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC--------------------
T ss_pred --------------------CccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcch---hHHHHHhhc
Confidence 1245999999999999999887 58999999999999885432110 111111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
. .....+.+++|+|+++++++.... ..| .+++.+
T Consensus 237 ~----~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 273 (280)
T 4da9_A 237 L----VPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADG 273 (280)
T ss_dssp ---------CCBCHHHHHHHHHHHHTSTTGGGTTCEEEEST
T ss_pred C----CCcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 1 123457899999999999997654 356 455543
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=193.97 Aligned_cols=206 Identities=23% Similarity=0.163 Sum_probs=156.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------Cc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------GC 82 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~ 82 (328)
+|+|+||||+|+||++++++|+++|++|++++|+.+ . ..+.++.+|++|++++.++++ ++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 67 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-------------EDLIYVEGDVTREEDVRRAVARAQEEAPL 67 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-------------SSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-------------cceEEEeCCCCCHHHHHHHHHHHHhhCCc
Confidence 679999999999999999999999999999999865 2 135789999999999888886 78
Q ss_pred cEEEEccCCCCCC-----CCC----cchhhhhHHHHHHHHHHHHHhcCC---C------ccEEEEecchhhhccCCCCCC
Q 020266 83 DGVCHTASPFYHD-----AKD----PQVELLDPAVKGTLNVLNSCAKFP---S------IKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 83 d~vih~a~~~~~~-----~~~----~~~~~~~~N~~~~~~l~~~~~~~~---~------~~~~v~~SS~~~~~~~~~~~~ 144 (328)
|+|||+||..... ..+ .+...+++|+.++.++++++.+.. + .++||++||.+++.+.+
T Consensus 68 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---- 143 (242)
T 1uay_A 68 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQI---- 143 (242)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCT----
T ss_pred eEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCC----
Confidence 9999999864321 111 456788999999999999887531 1 23899999987665211
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
+...|+.+|.+.+.+++.++.+. |++++++|||.++++..... ............+
T Consensus 144 ------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~ 202 (242)
T 1uay_A 144 ------------------GQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL---PEKAKASLAAQVP 202 (242)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS---CHHHHHHHHTTCC
T ss_pred ------------------CCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc---chhHHHHHHhhCC
Confidence 12559999999999999988764 89999999999999853321 1122233333222
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCCCC-cEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~ 257 (328)
. ...+++++|+|++++.++.+....| .|++.+
T Consensus 203 ~----~~~~~~~~dva~~~~~l~~~~~~~G~~~~v~g 235 (242)
T 1uay_A 203 F----PPRLGRPEEYAALVLHILENPMLNGEVVRLDG 235 (242)
T ss_dssp S----SCSCCCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred C----cccCCCHHHHHHHHHHHhcCCCCCCcEEEEcC
Confidence 1 1348899999999999998755566 666654
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-27 Score=205.25 Aligned_cols=221 Identities=19% Similarity=0.179 Sum_probs=153.2
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|..+++|+||||||+|+||++++++|+++|++|++++|+.++.+.+...+.......++.++.+|++|++++.++++
T Consensus 3 m~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 3 LKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999887666554444333333479999999999998887775
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---------CccEEEEecchhhhccCCCC
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---------SIKRVVLTSSMAAVLNTGKP 142 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~~~~~~~ 142 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+.. +.++||++||.+++.+.+
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~-- 160 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAG-- 160 (319)
T ss_dssp HHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCS--
T ss_pred HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCC--
Confidence 57999999996322 2234456789999999999999887641 245799999987665311
Q ss_pred CCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhC
Q 020266 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG 219 (328)
Q Consensus 143 ~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~ 219 (328)
....|+.||.+.+.+.+.++.+ .|+++++|+||.|.++....... ....+......
T Consensus 161 --------------------~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~~~~~~~~~ 219 (319)
T 3ioy_A 161 --------------------SPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDI-RPDALKGEVKP 219 (319)
T ss_dssp --------------------SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC---------------------
T ss_pred --------------------CCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCccccccc-Cchhhcccccc
Confidence 1245999999888888777665 38999999999999875332110 00111110000
Q ss_pred C-----CCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 220 A-----QTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 220 ~-----~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
. ..........++++|+|+.++.+++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~ 252 (319)
T 3ioy_A 220 VDKTAVERLAGVHEFGMEPDVIGARVIEAMKAN 252 (319)
T ss_dssp ---------CCGGGSSBCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHcC
Confidence 0 000111112389999999999999875
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=196.02 Aligned_cols=222 Identities=14% Similarity=0.063 Sum_probs=158.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+|+||||+|+||++++++|+++|++|++++| +.+....+...+... ..++.++.+|++|++++.++++
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999 544333332222211 2468899999999998887776
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---C-ccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. + .++||++||.++..+.+
T Consensus 82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------- 153 (261)
T 1gee_A 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWP-------- 153 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCT--------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCC--------
Confidence 78999999997432 1223455788999999999988766531 3 57999999976543110
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
+.+.|+.+|.+.+.+++.++.+. +++++++|||.+++|...... .............+
T Consensus 154 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~---- 214 (261)
T 1gee_A 154 --------------LFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKF-ADPEQRADVESMIP---- 214 (261)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHH-HSHHHHHHHHTTCT----
T ss_pred --------------CccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcc-cChhHHHHHHhcCC----
Confidence 23569999999999999988764 899999999999998532100 00112222222211
Q ss_pred CCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
...+++++|+|++++.++... ...| .+++.+
T Consensus 215 -~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 248 (261)
T 1gee_A 215 -MGYIGEPEEIAAVAAWLASSEASYVTGITLFADG 248 (261)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -CCCCcCHHHHHHHHHHHhCccccCCCCcEEEEcC
Confidence 245889999999999998753 2356 556654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=189.29 Aligned_cols=200 Identities=13% Similarity=0.109 Sum_probs=143.9
Q ss_pred CCeEEEECCccHHHHHHHHHHH-HCCCeEEEEecCCC-ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLL-SRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
||+|+||||||+||++++++|+ +.|++|++++|+++ +...+.. ...++.++.+|++|++++.++++++|+||
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~~d~vv 78 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII------DHERVTVIEGSFQNPGXLEQAVTNAEVVF 78 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH------TSTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc------CCCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence 5679999999999999999999 89999999999865 4333210 13578999999999999999999999999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
|+||.. |+. ++++++++++. +.++||++||.+++.+.+ ....+.. .+ ...+.
T Consensus 79 ~~ag~~--------------n~~-~~~~~~~~~~~-~~~~iv~iSs~~~~~~~~------~~~~~~~--~~----~~~~~ 130 (221)
T 3r6d_A 79 VGAMES--------------GSD-MASIVKALSRX-NIRRVIGVSMAGLSGEFP------VALEKWT--FD----NLPIS 130 (221)
T ss_dssp ESCCCC--------------HHH-HHHHHHHHHHT-TCCEEEEEEETTTTSCSC------HHHHHHH--HH----TSCHH
T ss_pred EcCCCC--------------Chh-HHHHHHHHHhc-CCCeEEEEeeceecCCCC------ccccccc--cc----ccccH
Confidence 999852 445 89999999987 788999999976543211 1111100 00 01125
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhh--
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF-- 244 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~-- 244 (328)
|+.+|..+|.+++. .++++++|||+.++++......... ... ......+++.+|+|++++.++
T Consensus 131 y~~~K~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~~~~~--------~~~---~~~~~~~~~~~dvA~~~~~l~~~ 195 (221)
T 3r6d_A 131 YVQGERQARNVLRE----SNLNYTILRLTWLYNDPEXTDYELI--------PEG---AQFNDAQVSREAVVKAIFDILHA 195 (221)
T ss_dssp HHHHHHHHHHHHHH----SCSEEEEEEECEEECCTTCCCCEEE--------CTT---SCCCCCEEEHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh----CCCCEEEEechhhcCCCCCcceeec--------cCC---ccCCCceeeHHHHHHHHHHHHHh
Confidence 99999999998854 6899999999999997322111000 000 011224899999999999999
Q ss_pred cCCCC-CC-cEEEec
Q 020266 245 EVPSA-NG-RYCLVE 257 (328)
Q Consensus 245 ~~~~~-~g-~~~~~~ 257 (328)
.++.. .+ .+.+.+
T Consensus 196 ~~~~~~~~~~~~i~~ 210 (221)
T 3r6d_A 196 ADETPFHRTSIGVGE 210 (221)
T ss_dssp SCCGGGTTEEEEEEC
T ss_pred cChhhhhcceeeecC
Confidence 76643 22 455543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=195.60 Aligned_cols=226 Identities=12% Similarity=-0.004 Sum_probs=167.6
Q ss_pred CcccccCCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 1 MSSVAAAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
|+++..+++|+++||||+| +||+++++.|+++|++|++++|+.+..+.+....... ..+.++++|++|++++.++
T Consensus 22 m~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~ 98 (296)
T 3k31_A 22 MRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL---GVKLTVPCDVSDAESVDNM 98 (296)
T ss_dssp CCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH---TCCEEEECCTTCHHHHHHH
T ss_pred ccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHH
Confidence 5556667789999999997 9999999999999999999999865544444433322 2468899999999988887
Q ss_pred hC-------CccEEEEccCCCC---------CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCC
Q 020266 79 VD-------GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGK 141 (328)
Q Consensus 79 ~~-------~~d~vih~a~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~ 141 (328)
++ ++|+||||||... ....+.+...+++|+.++.++++++.+.. ..++||++||.++..+.+
T Consensus 99 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~~- 177 (296)
T 3k31_A 99 FKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVVP- 177 (296)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCT-
T ss_pred HHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCCC-
Confidence 75 6899999999753 22334566889999999999999998752 235899999977654211
Q ss_pred CCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHh
Q 020266 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK 218 (328)
Q Consensus 142 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~ 218 (328)
....|+.||.+.+.+++.++.++ |+++++|+||.|.++..... ............
T Consensus 178 ---------------------~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~ 235 (296)
T 3k31_A 178 ---------------------HYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI-SDFHYILTWNKY 235 (296)
T ss_dssp ---------------------TTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC-HHHHHHHHHHHH
T ss_pred ---------------------CchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc-cchHHHHHHHHh
Confidence 13559999999999999998874 89999999999999864332 111222222322
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
..+ ...+..++|+|+++++++... ...| .+++.+
T Consensus 236 ~~p-----~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG 272 (296)
T 3k31_A 236 NSP-----LRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDC 272 (296)
T ss_dssp HST-----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCC-----CCCCCCHHHHHHHHHHHcCCccCCccCCEEEECC
Confidence 222 234778999999999999753 3456 455544
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=197.85 Aligned_cols=218 Identities=18% Similarity=0.154 Sum_probs=140.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|++|||||+|+||++++++|+++|++|++++|+.+....+...+... ..++.++.+|++|++++.++++
T Consensus 6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999876665544443322 3578899999999998888776
Q ss_pred --CccEEEEccCCCC--------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 --GCDGVCHTASPFY--------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 --~~d~vih~a~~~~--------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||... ....+.+...+++|+.++.++++++.+. .+.++||++||.+++.
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 153 (253)
T 3qiv_A 84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL---------- 153 (253)
T ss_dssp HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---------------
T ss_pred cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC----------
Confidence 7899999998731 1223345678999999977777766432 1457899999976432
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
..+.|+.||.+.+.+++.++.++ |+++++++||.+.+|...... .......+..+.
T Consensus 154 ---------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~~---- 212 (253)
T 3qiv_A 154 ---------------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTT--PKEMVDDIVKGL---- 212 (253)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC------------------------------
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcC--cHHHHHHHhccC----
Confidence 11349999999999999999885 799999999999998543211 111222222221
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....+.+++|+|+++++++.... ..| .|++.+
T Consensus 213 -~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdg 247 (253)
T 3qiv_A 213 -PLSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDG 247 (253)
T ss_dssp --------CCHHHHHHHHHHSGGGTTCCSCEEEC--
T ss_pred -CCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence 22346789999999999987543 246 666654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=196.75 Aligned_cols=216 Identities=19% Similarity=0.148 Sum_probs=158.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+....+...+ ..++.++.+|++|++++.++++
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAACRVDVSDEQQIIAMVDACVAA 100 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCcceEEEecCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999876555433332 3578899999999998877765
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~---------- 170 (277)
T 3gvc_A 101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVG---------- 170 (277)
T ss_dssp HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCC----------
Confidence 68999999997432 233446678999999999999987653 1456899999986655211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCC--------CcchHHHHHHHHhC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPT--------LNTSAAAVLSLIKG 219 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~ 219 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.+.+|..... ............
T Consensus 171 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-- 236 (277)
T 3gvc_A 171 ------------GTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARL-- 236 (277)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC------CCHHHHHHHH--
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcchhhHHHHhhhhhhhcc--
Confidence 1356999999999999998886 589999999999998731100 000000000111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++... ...| .+++.+
T Consensus 237 -------~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdG 270 (277)
T 3gvc_A 237 -------QGRMAAPEEMAGIVVFLLSDDASMITGTTQIADG 270 (277)
T ss_dssp -------HSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -------ccCCCCHHHHHHHHHHHcCCccCCccCcEEEECC
Confidence 124789999999999998753 2356 556654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=199.78 Aligned_cols=228 Identities=16% Similarity=0.128 Sum_probs=157.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.++.......+.......++.++.+|++|++++.++++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 84 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999865543332222211113468899999999998887775
Q ss_pred -CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHH----hcCC--CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 81 -GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSC----AKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 81 -~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~----~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
++|+||||||... .+.+...+++|+.++.++.+++ ++.. +.++||++||.+++.+.+
T Consensus 85 g~id~lv~~Ag~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 148 (267)
T 2gdz_A 85 GRLDILVNNAGVNN---EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVA------------- 148 (267)
T ss_dssp SCCCEEEECCCCCC---SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT-------------
T ss_pred CCCCEEEECCCCCC---hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCC-------------
Confidence 4799999999753 3446688999999776665544 3321 157899999976554211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHH--H---hcCccEEEEcCCcccCCCCCCCCcch-H----HHHHHHHhCCCCC
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFA--K---EKSIDLVTINPAMVIGPLLQPTLNTS-A----AAVLSLIKGAQTY 223 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~--~---~~~~~~~ilRp~~v~G~~~~~~~~~~-~----~~~~~~~~~~~~~ 223 (328)
....|+.||.+.+.+++.++ . ..|+++++|+||.+.++......... . ........
T Consensus 149 ---------~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----- 214 (267)
T 2gdz_A 149 ---------QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKD----- 214 (267)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHH-----
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHHH-----
Confidence 12459999999999998752 2 35899999999999887321100000 0 00000000
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCCCC-cEEEec-CccCHHH
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE-RVSHYSE 264 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~-~~~~~~e 264 (328)
+.....+++++|+|++++.++......| .+++.+ ...++.|
T Consensus 215 ~~~~~~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 215 MIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp HHHHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECC
T ss_pred HhccccCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcccccC
Confidence 0011247899999999999998765666 777775 5555544
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=194.72 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=152.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|++|||||+|+||+++++.|+++|++|++++|+.++....... .++.++.+|++|++++.++++
T Consensus 24 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~~~ 96 (260)
T 3gem_A 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQ-------AGAVALYGDFSCETGIMAFIDLLKTQ 96 (260)
T ss_dssp ---CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHH-------HTCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHh-------cCCeEEECCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999987654321111 147889999999998887775
Q ss_pred --CccEEEEccCCCCCCC----CCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 --GCDGVCHTASPFYHDA----KDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 --~~d~vih~a~~~~~~~----~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||...... .+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 97 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~----------- 165 (260)
T 3gem_A 97 TSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSS----------- 165 (260)
T ss_dssp CSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCS-----------
T ss_pred cCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCC-----------
Confidence 6899999999743221 2234468899999999999987653 2457899999987655311
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.||.+.+.+++.++.++ ++++++++||.+.++.... ........... ....
T Consensus 166 -----------~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~-----~~~~~~~~~~~-----p~~r 224 (260)
T 3gem_A 166 -----------KHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDD-----AAYRANALAKS-----ALGI 224 (260)
T ss_dssp -----------SCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC--------------------C-----CSCC
T ss_pred -----------CcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCC-----HHHHHHHHhcC-----CCCC
Confidence 13559999999999999999875 5999999999998874321 11112222211 1234
Q ss_pred ceeHHHHHHHHHHhhcCCCCCC-cEEEec
Q 020266 230 WVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~~~g-~~~~~~ 257 (328)
+..++|+|+++++++......| .+++.+
T Consensus 225 ~~~~edva~~v~~L~~~~~itG~~i~vdG 253 (260)
T 3gem_A 225 EPGAEVIYQSLRYLLDSTYVTGTTLTVNG 253 (260)
T ss_dssp CCCTHHHHHHHHHHHHCSSCCSCEEEEST
T ss_pred CCCHHHHHHHHHHHhhCCCCCCCEEEECC
Confidence 6689999999999997666677 556654
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=196.17 Aligned_cols=217 Identities=17% Similarity=0.179 Sum_probs=156.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEE-ecCCCChhhhhhhhhccCCCCcEEE-EEccCCCcCchHHhhC------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQL-FKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~~~~~~~~~~~------ 80 (328)
||+|+||||+|+||++++++|+++|++|+++ +|+.++...+...+... ..++.. +.+|++|++++.++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR--GSPLVAVLGANLLEAEAATALVHQAAEVL 78 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEeccCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999998 77765544433322221 235666 8999999998887754
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++. +. +.++||++||.+++++.+
T Consensus 79 ~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~---------- 147 (245)
T 2ph3_A 79 GGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKA-RFGRIVNITSVVGILGNP---------- 147 (245)
T ss_dssp TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHHCCS----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc-CCCEEEEEeChhhccCCC----------
Confidence 79999999997432 2233455788999999766666554 33 567999999987666321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.+. +++++++|||.++++..... ............+ .
T Consensus 148 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~-----~ 207 (245)
T 2ph3_A 148 ------------GQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERL---PQEVKEAYLKQIP-----A 207 (245)
T ss_dssp ------------SBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHHTCT-----T
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhc---CHHHHHHHHhcCC-----C
Confidence 12459999999999999998775 89999999999998753221 1122233333322 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
..+++++|+|++++.++..+. ..| .|++.++
T Consensus 208 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 241 (245)
T 2ph3_A 208 GRFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGG 241 (245)
T ss_dssp CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 458899999999999987542 245 6677654
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=196.91 Aligned_cols=206 Identities=19% Similarity=0.183 Sum_probs=153.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|++|||||+|+||+++++.|+++|++|++++|+.++.+.+ ...++.++.+|++|++++.++++
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~--------~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL--------NLPNTLCAQVDVTDKYTFDTAITRAEKIY 85 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT--------CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh--------hcCCceEEEecCCCHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999999999975543321 12368899999999998887776
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.+++.+.+
T Consensus 86 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~----------- 154 (266)
T 3p19_A 86 GPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFP----------- 154 (266)
T ss_dssp CSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCCC-----------
Confidence 78999999997432 223345577999999999988876532 1457999999987654211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcc-hHHHHHHHHhCCCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNT-SAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+.+.+.+.++.+ +|+++++++||.|.++........ ....+..... ..
T Consensus 155 -----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------~~ 216 (266)
T 3p19_A 155 -----------DHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRV-------DM 216 (266)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHHH-------HT
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhcc-------cc
Confidence 1245999999999999999887 489999999999999854322111 1111111110 12
Q ss_pred ccceeHHHHHHHHHHhhcCCCC
Q 020266 228 FGWVNVKDVANAHIQAFEVPSA 249 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~~ 249 (328)
..+++++|+|+++++++.++..
T Consensus 217 ~r~~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 217 GGVLAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp TCCBCHHHHHHHHHHHHHSCTT
T ss_pred cCCCCHHHHHHHHHHHHcCCCC
Confidence 3488999999999999998654
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=194.41 Aligned_cols=222 Identities=15% Similarity=0.124 Sum_probs=156.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV------- 79 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~------- 79 (328)
+++|+++||||+|+||++++++|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.+++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999865544433322221 347889999999999887776
Q ss_pred -CCccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 80 -DGCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 80 -~~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~---------- 166 (273)
T 1ae1_A 97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALP---------- 166 (273)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCT----------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCCC----------
Confidence 468999999997432 123345677889999999999988532 1457999999976554211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcc---hHHHHHHHHhCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT---SAAAVLSLIKGAQTYP 224 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~---~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+++|........ ............|
T Consensus 167 ------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p--- 231 (273)
T 1ae1_A 167 ------------SVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP--- 231 (273)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST---
T ss_pred ------------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCC---
Confidence 12559999999999999998764 89999999999999854321110 1112222222221
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++.... ..| .+++.+
T Consensus 232 --~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 265 (273)
T 1ae1_A 232 --MGRAGKPQEVSALIAFLCFPAASYITGQIIWADG 265 (273)
T ss_dssp --TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCcCHHHHHHHHHHHhCccccCcCCCEEEECC
Confidence 2347899999999999987532 356 455544
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-26 Score=191.71 Aligned_cols=219 Identities=16% Similarity=0.125 Sum_probs=164.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+....... ..++.++.+|++|++++.++++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK--GFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 45889999999999999999999999999999999876665544443322 3578999999999998887765
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.++..+.+
T Consensus 81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 149 (247)
T 3lyl_A 81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNP----------- 149 (247)
T ss_dssp CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT-----------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCC-----------
Confidence 57999999997432 223445678999999999999987653 1446899999987665321
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.+.++...... ... ....... ....
T Consensus 150 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~-~~~~~~~----~~~~ 210 (247)
T 3lyl_A 150 -----------GQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLT---DEQ-KSFIATK----IPSG 210 (247)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSC---HHH-HHHHHTT----STTC
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhcc---HHH-HHHHhhc----CCCC
Confidence 1255999999999999999886 4899999999999988644321 122 2222222 2234
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.+.+++|+|+++++++.... ..| .+++.+
T Consensus 211 ~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdg 242 (247)
T 3lyl_A 211 QIGEPKDIAAAVAFLASEEAKYITGQTLHVNG 242 (247)
T ss_dssp CCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCcCHHHHHHHHHHHhCCCcCCccCCEEEECC
Confidence 68899999999999987532 356 566654
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=195.34 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=162.8
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
||+...+++|+++||||+|+||+++++.|+++|++|++++++.. ..+.+...+... ..++.++.+|++|++++.+++
T Consensus 23 mm~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~ 100 (271)
T 3v2g_A 23 MMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA--GGRAVAIRADNRDAEAIEQAI 100 (271)
T ss_dssp HHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHH
T ss_pred hccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHH
Confidence 33444567899999999999999999999999999999977543 333333332222 357889999999999888877
Q ss_pred C-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCC
Q 020266 80 D-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 80 ~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
+ ++|+||||||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||..+..+..
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~~------ 174 (271)
T 3v2g_A 101 RETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVPW------ 174 (271)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCCS------
T ss_pred HHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCCC------
Confidence 6 78999999997432 2334566889999999999999987752 346899999965443110
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
+ ....|+.||.+.+.+++.++.++ |+++++++||.|.++........ ........+
T Consensus 175 ----------~-----~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~----~~~~~~~~~-- 233 (271)
T 3v2g_A 175 ----------P-----GISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGDH----AEAQRERIA-- 233 (271)
T ss_dssp ----------T-----TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCSS----HHHHHHTCT--
T ss_pred ----------C-----CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccchh----HHHHHhcCC--
Confidence 0 13569999999999999998875 89999999999999864332211 122222221
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++... ...| .+++.+
T Consensus 234 ---~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdG 267 (271)
T 3v2g_A 234 ---TGSYGEPQDIAGLVAWLAGPQGKFVTGASLTIDG 267 (271)
T ss_dssp ---TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---CCCCCCHHHHHHHHHHHhCcccCCccCCEEEeCc
Confidence 234789999999999998643 2356 445544
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-26 Score=191.69 Aligned_cols=202 Identities=16% Similarity=0.133 Sum_probs=138.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
.|+||+||||||||+||++++++|+++| ++|++++|++++...+ ...+++++.+|++|++++.++++++|+
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--------~~~~~~~~~~Dl~d~~~~~~~~~~~D~ 91 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--------YPTNSQIIMGDVLNHAALKQAMQGQDI 91 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--------CCTTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--------ccCCcEEEEecCCCHHHHHHHhcCCCE
Confidence 4557899999999999999999999999 8999999987654321 124789999999999999999999999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
|||+|+... ....+.++++++++. ++++||++||.+++.+.+ .......|..+..
T Consensus 92 vv~~a~~~~-------------~~~~~~~~~~~~~~~-~~~~iV~iSS~~~~~~~~---~~~~~~~~~~~~~-------- 146 (236)
T 3qvo_A 92 VYANLTGED-------------LDIQANSVIAAMKAC-DVKRLIFVLSLGIYDEVP---GKFVEWNNAVIGE-------- 146 (236)
T ss_dssp EEEECCSTT-------------HHHHHHHHHHHHHHT-TCCEEEEECCCCC-------------------CG--------
T ss_pred EEEcCCCCc-------------hhHHHHHHHHHHHHc-CCCEEEEEecceecCCCC---cccccchhhcccc--------
Confidence 999997511 113467899999998 788999999976544211 0111222322211
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhh
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~ 244 (328)
+...|..+|..+ .+.++++++|||+.++++...... . ...+. .....+++++|+|++++.++
T Consensus 147 --~~~~~~~~~~~l----~~~gi~~~~vrPg~i~~~~~~~~~-~-------~~~~~----~~~~~~i~~~DvA~~i~~ll 208 (236)
T 3qvo_A 147 --PLKPFRRAADAI----EASGLEYTILRPAWLTDEDIIDYE-L-------TSRNE----PFKGTIVSRKSVAALITDII 208 (236)
T ss_dssp --GGHHHHHHHHHH----HTSCSEEEEEEECEEECCSCCCCE-E-------ECTTS----CCSCSEEEHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHH----HHCCCCEEEEeCCcccCCCCcceE-E-------eccCC----CCCCcEECHHHHHHHHHHHH
Confidence 233344445444 357999999999999987532210 0 00011 11235899999999999999
Q ss_pred cCCC-CCC-cEEEecC
Q 020266 245 EVPS-ANG-RYCLVER 258 (328)
Q Consensus 245 ~~~~-~~g-~~~~~~~ 258 (328)
.++. ..| .|++++.
T Consensus 209 ~~~~~~~g~~~~i~~~ 224 (236)
T 3qvo_A 209 DKPEKHIGENIGINQP 224 (236)
T ss_dssp HSTTTTTTEEEEEECS
T ss_pred cCcccccCeeEEecCC
Confidence 9876 234 8888763
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=198.03 Aligned_cols=220 Identities=15% Similarity=0.102 Sum_probs=163.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|++|||||+|+||+++++.|+++|++|++++|+.+..+.+...+... ..++.++.+|++|++++.++++
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA--GLEGRGAVLNVNDATAVDALVESTLKE 102 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999876655544433322 2468889999999998887776
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.++..+.+
T Consensus 103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 172 (270)
T 3ftp_A 103 FGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNP---------- 172 (270)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCC----------
Confidence 78999999996432 223445678999999999999987642 1346899999987766321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++..... ............ ..
T Consensus 173 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~-----p~ 232 (270)
T 3ftp_A 173 ------------GQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGL---PQEQQTALKTQI-----PL 232 (270)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHS---CHHHHHHHHTTC-----TT
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhc---CHHHHHHHHhcC-----CC
Confidence 1355999999999999999887 489999999999988742211 112222222221 23
Q ss_pred ccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
..+.+++|+|+++++++... ...| .+++.+
T Consensus 233 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 265 (270)
T 3ftp_A 233 GRLGSPEDIAHAVAFLASPQAGYITGTTLHVNG 265 (270)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCHHHHHHHHHHHhCCCcCCccCcEEEECC
Confidence 45889999999999998643 2356 556654
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=196.23 Aligned_cols=224 Identities=18% Similarity=0.165 Sum_probs=159.7
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|..+..+++|+++||||+|+||++++++|+++|++|++++|+.++...+...+.. ..++.++.+|++|++++.++++
T Consensus 21 ~~~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~ 97 (276)
T 2b4q_A 21 MHPYFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA---YGDCQAIPADLSSEAGARRLAQ 97 (276)
T ss_dssp CCTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTT---SSCEEECCCCTTSHHHHHHHHH
T ss_pred cccccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCceEEEEeeCCCHHHHHHHHH
Confidence 3344446689999999999999999999999999999999986554443332221 1268889999999998887775
Q ss_pred -------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---Cc----cEEEEecchhhhccCCC
Q 020266 81 -------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SI----KRVVLTSSMAAVLNTGK 141 (328)
Q Consensus 81 -------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~----~~~v~~SS~~~~~~~~~ 141 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. +. ++||++||.+++.+.+
T Consensus 98 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~- 176 (276)
T 2b4q_A 98 ALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMG- 176 (276)
T ss_dssp HHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCC-
T ss_pred HHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCC-
Confidence 68999999996332 2334456789999999998888775421 22 7999999976554211
Q ss_pred CCCCCccccCCCCCCccccccCCc-hhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHH
Q 020266 142 PRTPDVVVDETWFSDPEVCKQSEL-WYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI 217 (328)
Q Consensus 142 ~~~~~~~~~E~~~~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~ 217 (328)
... .|+.||.+.+.+++.++.+. |+++++++||.+.++..... .........
T Consensus 177 ---------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~ 232 (276)
T 2b4q_A 177 ---------------------EQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHI---ANDPQALEA 232 (276)
T ss_dssp ---------------------CSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHH---HHCHHHHHH
T ss_pred ---------------------CCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhc---chhHHHHHH
Confidence 112 59999999999999998763 89999999999988752210 001111121
Q ss_pred h--CCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 218 K--GAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 218 ~--~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
. ..+ ...+.+++|+|+++++++..+ ...| .+++.+
T Consensus 233 ~~~~~p-----~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 272 (276)
T 2b4q_A 233 DSASIP-----MGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDG 272 (276)
T ss_dssp HHHTST-----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred hhcCCC-----CCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence 2 211 234789999999999998754 2356 445443
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=195.04 Aligned_cols=227 Identities=15% Similarity=0.093 Sum_probs=156.3
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
|..+++|+++||||+|+||+++++.|+++|++|+++.+ +.+........+.. ...++.++.+|++|++++.++++
T Consensus 3 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (259)
T 3edm_A 3 LQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEK--LGRSALAIKADLTNAAEVEAAISAA 80 (259)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHT--TTSCCEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 44567899999999999999999999999999999855 44333333232222 23578899999999998888776
Q ss_pred -----CccEEEEccCCC-C-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 -----GCDGVCHTASPF-Y-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 -----~~d~vih~a~~~-~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.. . ....+.+...+++|+.|+.++++++.+.. ..+++|++||.++.....
T Consensus 81 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 152 (259)
T 3edm_A 81 ADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGG-------- 152 (259)
T ss_dssp HHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCS--------
T ss_pred HHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCC--------
Confidence 689999999864 2 12233456789999999999999998862 134899999987652110
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcC--ccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS--IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
.....|+.||.+.+.+++.++.+.+ ++++++.||.+.++....... ......... ...
T Consensus 153 -------------~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~-----~~p 212 (259)
T 3edm_A 153 -------------PGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTK--PEVRERVAG-----ATS 212 (259)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC---------------------------
T ss_pred -------------CCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccC--hHHHHHHHh-----cCC
Confidence 0124599999999999999988753 899999999998875332110 011111111 122
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCC-cEEEecCcc
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVERVS 260 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~~~ 260 (328)
...+.+++|+|+++++++.... ..| .+++.|+..
T Consensus 213 ~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~ 249 (259)
T 3edm_A 213 LKREGSSEDVAGLVAFLASDDAAYVTGACYDINGGVL 249 (259)
T ss_dssp --CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSS
T ss_pred CCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcC
Confidence 3457899999999999987542 356 667765443
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=198.32 Aligned_cols=223 Identities=14% Similarity=0.073 Sum_probs=160.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
++++|++|||||+|+||+++++.|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.++++
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA--GHDVDGSSCDVTSTDEVHAAVAAAVER 98 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999876655544433222 3578999999999998887765
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhc--C---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAK--F---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~--~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+ . .+.++||++||.++..+.+
T Consensus 99 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~-------- 170 (279)
T 3sju_A 99 FGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVM-------- 170 (279)
T ss_dssp HCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCT--------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCC--------
Confidence 68999999997432 22334567888999999999998765 1 1446899999987654211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCC-------CCc-chHHHHHHHH
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQP-------TLN-TSAAAVLSLI 217 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~-------~~~-~~~~~~~~~~ 217 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.|.+|.... ... ..........
T Consensus 171 --------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (279)
T 3sju_A 171 --------------YAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFN 236 (279)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHH
T ss_pred --------------CChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHH
Confidence 1245999999999999999887 48999999999998863210 000 1112222232
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
... ....+.+++|+|+++++++.... ..| .+++.+
T Consensus 237 ~~~-----p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdG 274 (279)
T 3sju_A 237 AKI-----PLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCG 274 (279)
T ss_dssp TTC-----TTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEEST
T ss_pred hcC-----CCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECC
Confidence 222 23457899999999999987643 356 555544
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=209.91 Aligned_cols=223 Identities=17% Similarity=0.244 Sum_probs=159.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh---hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP---KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
||+|+|||||||||+++++.|+++|++|++++|+.... .....+... ...+++++.+|++|++++.++++++|+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l--~~~~v~~v~~D~~d~~~l~~~~~~~d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESF--KASGANIVHGSIDDHASLVEAVKNVDVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHH--HTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHH--HhCCCEEEEeccCCHHHHHHHHcCCCEE
Confidence 57899999999999999999999999999999976532 111111111 1247899999999999999999999999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
||+|+... +.++.+++++|++. + +++||+ |+ +|.. .+|..+..|. .
T Consensus 82 i~~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~----~g~~--------~~~~~~~~p~-----~ 128 (308)
T 1qyc_A 82 ISTVGSLQ--------------IESQVNIIKAIKEV-GTVKRFFP-SE----FGND--------VDNVHAVEPA-----K 128 (308)
T ss_dssp EECCCGGG--------------SGGGHHHHHHHHHH-CCCSEEEC-SC----CSSC--------TTSCCCCTTH-----H
T ss_pred EECCcchh--------------hhhHHHHHHHHHhc-CCCceEee-cc----cccC--------ccccccCCcc-----h
Confidence 99998521 33567899999987 5 889884 43 2111 1122222221 2
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC--CCC--CCCCccceeHHHHHHHH
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTFGWVNVKDVANAH 240 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~v~v~D~a~~~ 240 (328)
+.| .+|..+|.+++. .+++++++||+.++|+......... .....+. ..+ ++..++|++++|+|+++
T Consensus 129 ~~y-~sK~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~ 199 (308)
T 1qyc_A 129 SVF-EVKAKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQAG----LTAPPRDKVVILGDGNARVVFVKEEDIGTFT 199 (308)
T ss_dssp HHH-HHHHHHHHHHHH----HTCCBEEEECCEEHHHHTTTTTCTT----CSSCCSSEEEEETTSCCEEEEECHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHh----cCCCeEEEEeceecccccccccccc----ccCCCCCceEEecCCCceEEEecHHHHHHHH
Confidence 458 999999998864 4799999999998885322111000 0000111 112 46778999999999999
Q ss_pred HHhhcCCCCCC-cEEEe--cCccCHHHHHHHHHHhCCC
Q 020266 241 IQAFEVPSANG-RYCLV--ERVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 241 ~~~~~~~~~~g-~~~~~--~~~~~~~el~~~i~~~~~~ 275 (328)
+.++.++...+ .|++. ++.+|+.|+++.+.+.+|.
T Consensus 200 ~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 237 (308)
T 1qyc_A 200 IKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDK 237 (308)
T ss_dssp HTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTS
T ss_pred HHHHhCccccCeEEEEeCCCCccCHHHHHHHHHHHhCC
Confidence 99998865444 66665 3689999999999999984
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-26 Score=194.17 Aligned_cols=224 Identities=12% Similarity=0.040 Sum_probs=157.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+.......++.++.+|++|++++.++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG 84 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999865544433332211112268899999999999888876
Q ss_pred CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 ~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 152 (260)
T 2z1n_A 85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQ------------ 152 (260)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCCC------------
Confidence 59999999996322 223345678999999998887776532 1457999999976554211
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc------chH-HH-HHHHHhCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN------TSA-AA-VLSLIKGAQ 221 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~------~~~-~~-~~~~~~~~~ 221 (328)
....|+.+|.+.+.+.+.++.+. |+++++|+||.+++|....... ... .. .......
T Consensus 153 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 220 (260)
T 2z1n_A 153 ----------DLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASR-- 220 (260)
T ss_dssp ----------TBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------C--
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhc--
Confidence 12459999999999999998875 8999999999999986431100 000 00 1111111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
.....+.+++|+|+++++++... ...| .+++.+
T Consensus 221 ---~p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdG 256 (260)
T 2z1n_A 221 ---IPMGRVGKPEELASVVAFLASEKASFITGAVIPVDG 256 (260)
T ss_dssp ---CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ---CCCCCccCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence 11234789999999999998753 2356 445544
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=196.58 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=158.3
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|..+++|+++||||+|+||+++++.|+++|++|++++|+.++...+.... ..++.++.+|++|++++.++++
T Consensus 22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (266)
T 3grp_A 22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFSANLSDRKSIKQLAEVAE 96 (266)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEeecCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999866554433222 3478999999999998888775
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 97 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~-------- 168 (266)
T 3grp_A 97 REMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNP-------- 168 (266)
T ss_dssp HHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC---------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCCC--------
Confidence 78999999997432 223345678899999988887766542 1457999999977665311
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++..... ............
T Consensus 169 --------------~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~----- 226 (266)
T 3grp_A 169 --------------GQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL---NEKQKEAIMAMI----- 226 (266)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC---CHHHHHHHHTTC-----
T ss_pred --------------CchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc---CHHHHHHHHhcC-----
Confidence 12559999999999999998864 89999999999988743221 112233333322
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....+.+++|+|+++++++.... ..| .+++.+
T Consensus 227 p~~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdG 261 (266)
T 3grp_A 227 PMKRMGIGEEIAFATVYLASDEAAYLTGQTLHING 261 (266)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCcCHHHHHHHHHHHhCccccCccCCEEEECC
Confidence 23457899999999999987542 356 555544
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-26 Score=194.96 Aligned_cols=220 Identities=15% Similarity=0.107 Sum_probs=160.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+....+.... ..++.++++|++|++++.++++
T Consensus 24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (277)
T 4dqx_A 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFGVRVDVSSAKDAESMVEKTTAK 98 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999876554433322 3478899999999998887776
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.+++.+.+
T Consensus 99 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 168 (277)
T 4dqx_A 99 WGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIA---------- 168 (277)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCT----------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCC----------
Confidence 78999999996322 223445678889999999999887543 1456999999976554211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC---CcchHHHHHHHHhCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+++.++.++ |+++++++||.+.+|..... ..............
T Consensus 169 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~----- 231 (277)
T 4dqx_A 169 ------------DRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNAR----- 231 (277)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTT-----
T ss_pred ------------CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhc-----
Confidence 13569999999999999998875 89999999999988631000 00011111112222
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.....+.+++|+|+++++++.... ..| .+++.+
T Consensus 232 ~~~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 267 (277)
T 4dqx_A 232 AVMDRMGTAEEIAEAMLFLASDRSRFATGSILTVDG 267 (277)
T ss_dssp STTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred CcccCCcCHHHHHHHHHHHhCCccCCCcCCEEEECC
Confidence 123457899999999999987543 356 556654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-26 Score=192.12 Aligned_cols=218 Identities=17% Similarity=0.128 Sum_probs=156.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Cc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 82 (328)
..++|+||||||+|+||+++++.|+++|++|++++|+.++...+.... ..++.++.+|+++++++.++++ ++
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~i 85 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLISKTSNL 85 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHHhcCCC
Confidence 456899999999999999999999999999999999876555443332 2478899999999999888886 68
Q ss_pred cEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 83 DGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 83 d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
|+||||||... ....+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 86 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------- 151 (249)
T 3f9i_A 86 DILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNP-------------- 151 (249)
T ss_dssp SEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCS--------------
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCC--------------
Confidence 99999999643 2234556788999999999999887543 1446899999976655211
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccce
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.+.++...... .........+. ....+.
T Consensus 152 --------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~~-----~~~~~~ 215 (249)
T 3f9i_A 152 --------GQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLN---EKQREAIVQKI-----PLGTYG 215 (249)
T ss_dssp --------CSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CC---HHHHHHHHHHC-----TTCSCB
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccC---HHHHHHHHhcC-----CCCCCc
Confidence 2355999999999999999886 4899999999999988643321 22223333322 234688
Q ss_pred eHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 232 NVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
+++|+|+++++++.+.. ..| .+++.++
T Consensus 216 ~~~dva~~~~~l~s~~~~~~tG~~~~vdgG 245 (249)
T 3f9i_A 216 IPEDVAYAVAFLASNNASYITGQTLHVNGG 245 (249)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence 99999999999997543 246 5666553
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=196.06 Aligned_cols=220 Identities=16% Similarity=0.152 Sum_probs=154.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
++|+|+||||+|+||++++++|+++|++|+++ .|+.+..+.+....... ..++.++.+|++|++++.++++
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES--GGEAVAIPGDVGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999887 55554444433333222 3578999999999998887775
Q ss_pred -CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC------CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF------PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 -~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~------~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++.++.+.
T Consensus 103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 176 (272)
T 4e3z_A 103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSAT------ 176 (272)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTT------
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCC------
Confidence 68999999997432 123345678999999999999887653 13468999999877763210
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+++.++.+. |+++++++||.|.++..... ............
T Consensus 177 ---------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~----- 234 (272)
T 4e3z_A 177 ---------------QYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASG--GLPDRAREMAPS----- 234 (272)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC--------------------C-----
T ss_pred ---------------CcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCccccc--CChHHHHHHhhc-----
Confidence 12459999999999999998875 89999999999999853321 011112222221
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.....+.+++|+|+++++++.... ..| .+++.+
T Consensus 235 ~~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdg 270 (272)
T 4e3z_A 235 VPMQRAGMPEEVADAILYLLSPSASYVTGSILNVSG 270 (272)
T ss_dssp CTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCcCCCcCHHHHHHHHHHHhCCccccccCCEEeecC
Confidence 223447789999999999987532 346 666654
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=198.64 Aligned_cols=221 Identities=15% Similarity=0.107 Sum_probs=163.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|++|||||+|+||+++++.|+++|++|++++|+.+..+.+...+... ..++.++++|++|++++.++++
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 106 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV--GGKALPIRCDVTQPDQVRGMLDQMTGE 106 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999877666554444322 3578899999999999888776
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC----CccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||.... ...+.++..+++|+.++.++++++.+.. ..+++|++||.+...+...
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~-------- 178 (276)
T 3r1i_A 107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIP-------- 178 (276)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCS--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCC--------
Confidence 78999999997432 2234456778899999999999876541 2368999999765542110
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
. ..+.|+.||.+.+.+++.++.+ .|+++++++||.|.++..... ........... .
T Consensus 179 ------~------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~----~~~~~~~~~~~-----p 237 (276)
T 3r1i_A 179 ------Q------QVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL----ADYHALWEPKI-----P 237 (276)
T ss_dssp ------S------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG----GGGHHHHGGGS-----T
T ss_pred ------C------CcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc----hHHHHHHHhcC-----C
Confidence 0 1245999999999999999887 589999999999998854321 11112222211 1
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++.... ..| .+++.+
T Consensus 238 ~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdG 271 (276)
T 3r1i_A 238 LGRMGRPEELTGLYLYLASAASSYMTGSDIVIDG 271 (276)
T ss_dssp TSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCcCHHHHHHHHHHHcCccccCccCcEEEECc
Confidence 2347899999999999987532 356 455544
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=196.63 Aligned_cols=233 Identities=18% Similarity=0.164 Sum_probs=163.9
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC---------Chhhhhhhhhcc-CCCCcEEEEEccCCCcCc
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN---------DPKKTRHLLALD-GASERLQLFKANLLEEGS 74 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~ 74 (328)
..+++|++|||||+|+||+++++.|+++|++|++++|+.. ..+.+....... ....++.++.+|++|+++
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES 88 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 3457899999999999999999999999999999998732 122222211111 113579999999999999
Q ss_pred hHHhhC-------CccEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCC
Q 020266 75 FDSIVD-------GCDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKP 142 (328)
Q Consensus 75 ~~~~~~-------~~d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~ 142 (328)
+.++++ ++|+||||||..... ..+.+...+++|+.++.++++++.+. ...++||++||.++..+...
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~- 167 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGS- 167 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCC-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCcc-
Confidence 888776 789999999974322 23456688999999999999987653 12468999999876653210
Q ss_pred CCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHh-
Q 020266 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK- 218 (328)
Q Consensus 143 ~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~- 218 (328)
+.+ ....|+.||.+.+.+++.++.++ |+++++++||.|.+|..... .....+.....
T Consensus 168 ------------~~~-----~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~ 228 (278)
T 3sx2_A 168 ------------ADP-----GSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNE--FTREWLAKMAAA 228 (278)
T ss_dssp ------------SSH-----HHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSH--HHHHHHHHHHHH
T ss_pred ------------CCC-----CchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhh--hHHHHHhhccch
Confidence 001 12459999999999999998764 69999999999999864421 11122222211
Q ss_pred CC--CCCC-CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 219 GA--QTYP-NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 219 ~~--~~~~-~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.. ..+. .....+++++|+|+++++++.... ..| .+++.+
T Consensus 229 ~~~~~~~~~~~p~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 273 (278)
T 3sx2_A 229 TDTPGAMGNAMPVEVLAPEDVANAVAWLVSDQARYITGVTLPVDA 273 (278)
T ss_dssp CC--CTTSCSSSCSSBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred hhhhhhhhhhcCcCcCCHHHHHHHHHHHhCcccccccCCEEeECC
Confidence 11 1111 112678999999999999987532 356 555544
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=193.83 Aligned_cols=217 Identities=17% Similarity=0.155 Sum_probs=161.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+. ...+.+...+... ..++.++.+|++|++++.++++
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA--GGEAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999998843 3333333333222 3578999999999998887776
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.++..+.+
T Consensus 103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 173 (269)
T 4dmm_A 103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNP--------- 173 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCCT---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCC---------
Confidence 78999999997432 223456678999999999999987542 1456899999987766321
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++.... .. ........ .
T Consensus 174 -------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----~~--~~~~~~~~-----p 229 (269)
T 4dmm_A 174 -------------GQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE----LA--AEKLLEVI-----P 229 (269)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH----HH--HHHHGGGC-----T
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc----cc--HHHHHhcC-----C
Confidence 1255999999999999999886 48999999999999885431 11 11222211 2
Q ss_pred CccceeHHHHHHHHHHhhcCCC---CCC-cEEEec
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS---ANG-RYCLVE 257 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~---~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++.++. ..| .+++.+
T Consensus 230 ~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdG 264 (269)
T 4dmm_A 230 LGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDG 264 (269)
T ss_dssp TSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEEST
T ss_pred CCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECC
Confidence 3457899999999999998632 346 556654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=193.45 Aligned_cols=225 Identities=14% Similarity=0.118 Sum_probs=159.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+.......++.++.+|++|++++.++++
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999876554433332222113578899999999998887775
Q ss_pred --CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 160 (267)
T 1iy8_A 90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIG--------- 160 (267)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCS---------
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCCC---------
Confidence 68999999997432 123345678899999988877765432 1457999999976554211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCC-----CCcchHHHHHHHHhCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQP-----TLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~-----~~~~~~~~~~~~~~~~~ 221 (328)
....|+.||.+.+.+++.++.+ +|+++++|+||.+.++.... ................|
T Consensus 161 -------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p 227 (267)
T 1iy8_A 161 -------------NQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNP 227 (267)
T ss_dssp -------------SBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCT
T ss_pred -------------CCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccCC
Confidence 1356999999999999998876 48999999999998874211 00001111112222111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++..+ ...| .+++.+
T Consensus 228 -----~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdG 261 (267)
T 1iy8_A 228 -----SKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDG 261 (267)
T ss_dssp -----TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred -----CCCCcCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence 235789999999999998754 2356 445544
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-27 Score=207.22 Aligned_cols=223 Identities=14% Similarity=0.148 Sum_probs=157.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-C--h-hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-D--P-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~--~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
||+|+|||||||||++++++|+++|++|++++|+.. . . .....+... ...+++++.+|++|++++.++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l--~~~~v~~v~~D~~d~~~l~~~~~~~d~ 79 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNY--QSLGVILLEGDINDHETLVKAIKQVDI 79 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHH--HHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHH--HhCCCEEEEeCCCCHHHHHHHHhCCCE
Confidence 578999999999999999999999999999999862 1 1 111111000 123688999999999999999999999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
|||+|+... +.++.+++++|++. + +++||+ |+ +|.. .+|..+..|.
T Consensus 80 vi~~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~----~g~~--------~~~~~~~~p~----- 126 (307)
T 2gas_A 80 VICAAGRLL--------------IEDQVKIIKAIKEA-GNVKKFFP-SE----FGLD--------VDRHDAVEPV----- 126 (307)
T ss_dssp EEECSSSSC--------------GGGHHHHHHHHHHH-CCCSEEEC-SC----CSSC--------TTSCCCCTTH-----
T ss_pred EEECCcccc--------------cccHHHHHHHHHhc-CCceEEee-cc----cccC--------cccccCCCcc-----
Confidence 999998632 34568899999987 5 889883 33 2211 1122222221
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC--CCC--CCCCccceeHHHHHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTFGWVNVKDVANA 239 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~v~v~D~a~~ 239 (328)
.+.| .+|..+|.+++. .+++++++||+.++++........ ......+. ..+ ++..+++++++|+|++
T Consensus 127 ~~~y-~sK~~~e~~~~~----~~i~~~~lrp~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~ 197 (307)
T 2gas_A 127 RQVF-EEKASIRRVIEA----EGVPYTYLCCHAFTGYFLRNLAQL----DATDPPRDKVVILGDGNVKGAYVTEADVGTF 197 (307)
T ss_dssp HHHH-HHHHHHHHHHHH----HTCCBEEEECCEETTTTGGGTTCT----TCSSCCSSEEEEETTSCSEEEEECHHHHHHH
T ss_pred hhHH-HHHHHHHHHHHH----cCCCeEEEEcceeecccccccccc----ccccCCCCeEEEecCCCcceEEeeHHHHHHH
Confidence 2459 999999998854 489999999999888542111000 00000111 112 3567899999999999
Q ss_pred HHHhhcCCCCCC-cEEEe--cCccCHHHHHHHHHHhCCC
Q 020266 240 HIQAFEVPSANG-RYCLV--ERVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 240 ~~~~~~~~~~~g-~~~~~--~~~~~~~el~~~i~~~~~~ 275 (328)
++.++.++...| .|++. ++.+|+.|+++.+.+.+|.
T Consensus 198 ~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~ 236 (307)
T 2gas_A 198 TIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGK 236 (307)
T ss_dssp HHHHHTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTS
T ss_pred HHHHHcCccccCceEEEeCCCCcCCHHHHHHHHHHHhCC
Confidence 999998765444 56654 3689999999999999874
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=192.39 Aligned_cols=222 Identities=16% Similarity=0.165 Sum_probs=161.2
Q ss_pred ccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-
Q 020266 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 3 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
.++.+++|+|+||||+|+||++++++|+++|++|+++.+ +..........+.. ...++.++.+|++|++++.++++
T Consensus 20 ~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~ 97 (267)
T 4iiu_A 20 FQSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVA--NGGNGRLLSFDVANREQCREVLEH 97 (267)
T ss_dssp -----CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHH
Confidence 344566889999999999999999999999999977664 43333332222222 23578999999999998887776
Q ss_pred ------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh-----cCCCccEEEEecchhhhccCCCCCC
Q 020266 81 ------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA-----KFPSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 ------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~-----~~~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
.+|+||||||.... ...+.+...+++|+.++.++++++. +. +.++||++||.++..+.+
T Consensus 98 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~---- 172 (267)
T 4iiu_A 98 EIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGAR-QGGRIITLSSVSGVMGNR---- 172 (267)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCHHHHHCCT----
T ss_pred HHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEEcchHhccCCC----
Confidence 78999999997432 2234456789999999999999874 33 557999999987776321
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
....|+.+|.+.+.+.+.++.+. |+++++++||.+.++..... ...........+
T Consensus 173 ------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~p 230 (267)
T 4iiu_A 173 ------------------GQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME----ESALKEAMSMIP 230 (267)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC----HHHHHHHHHTCT
T ss_pred ------------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc----HHHHHHHHhcCC
Confidence 13559999999999999988875 89999999999999865432 334444444332
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEecC
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVER 258 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~~ 258 (328)
...+.+++|+|+++++++... ...| .+++.++
T Consensus 231 -----~~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 231 -----MKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp -----TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -----CCCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 235789999999999998753 2356 5555543
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=198.05 Aligned_cols=242 Identities=14% Similarity=0.108 Sum_probs=165.4
Q ss_pred ccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC---------hhhhhhhhh-ccCCCCcEEEEEccCCCc
Q 020266 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND---------PKKTRHLLA-LDGASERLQLFKANLLEE 72 (328)
Q Consensus 3 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~-~~~~~~~~~~~~~Dl~~~ 72 (328)
+|..+++|++|||||+|+||+++++.|+++|++|++++|+... ...+..... ......++.++.+|++|+
T Consensus 4 ~m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 83 (287)
T 3pxx_A 4 SMGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDR 83 (287)
T ss_dssp SCCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCH
T ss_pred cccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCH
Confidence 3556678999999999999999999999999999999987321 112211111 111245789999999999
Q ss_pred CchHHhhC-------CccEEEEccCCCCC---CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCC
Q 020266 73 GSFDSIVD-------GCDGVCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGK 141 (328)
Q Consensus 73 ~~~~~~~~-------~~d~vih~a~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~ 141 (328)
+++.++++ ++|+||||||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||.+++.+...
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~ 163 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQ 163 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccc
Confidence 98887776 78999999997432 2344566889999999999999998763 3458999999876653211
Q ss_pred CCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHH-----
Q 020266 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAV----- 213 (328)
Q Consensus 142 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~----- 213 (328)
.+..|..+. + ....|+.||.+.+.+++.++.++ |+++++++||.|.++...... ....+
T Consensus 164 -----~~~~~~~~~-~-----~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~ 230 (287)
T 3pxx_A 164 -----PPGAGGPQG-P-----GGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAP--MYRQFRPDLE 230 (287)
T ss_dssp -----CC-----CH-H-----HHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHH--HHHHHCTTSS
T ss_pred -----cccccccCC-C-----ccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccc--hhhhhccccc
Confidence 111122111 1 23569999999999999998875 899999999999998643210 00000
Q ss_pred ----HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 214 ----LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 214 ----~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
.......+........+.+++|+|+++++++... ...| .+++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdG 281 (287)
T 3pxx_A 231 APSRADALLAFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDA 281 (287)
T ss_dssp SCCHHHHHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cchhHHHHhhhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECc
Confidence 0000000001111256899999999999998653 2356 555544
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=199.17 Aligned_cols=226 Identities=14% Similarity=0.074 Sum_probs=164.5
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
+..+++|+++||||+|+||+++++.|+++|++|++++|+.++.......+... ...++.++.+|++|++++.++++
T Consensus 22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~ 100 (277)
T 4fc7_A 22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGA-TGRRCLPLSMDVRAPPAVMAAVDQAL 100 (277)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH-HSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999876554433332111 13578999999999998887775
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. +.++||++||.++..+.+
T Consensus 101 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 172 (277)
T 4fc7_A 101 KEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQA-------- 172 (277)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCT--------
T ss_pred HHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCC--------
Confidence 68999999996322 2334566789999999999999885431 346899999987666321
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.||.+.+.+++.++.++ |+++++++||.|.++....................
T Consensus 173 --------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~----- 233 (277)
T 4fc7_A 173 --------------LQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTAS----- 233 (277)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTS-----
T ss_pred --------------CcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccC-----
Confidence 12459999999999999998874 89999999999998731100000112233333322
Q ss_pred CCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
....+.+++|+|+++++++... ...| .+++.+
T Consensus 234 p~~r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdG 268 (277)
T 4fc7_A 234 PLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADG 268 (277)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCcCHHHHHHHHHHHcCCccCCcCCCEEEECC
Confidence 2335789999999999999753 2456 555544
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=193.44 Aligned_cols=217 Identities=16% Similarity=0.149 Sum_probs=158.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
+|+|+||||+|+||++++++|+++|++|+++ .|+.+....+...+... ..++.++.+|++|++++.++++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999995 67755444433322221 2468899999999998888776
Q ss_pred CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 ~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++.++.+
T Consensus 79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------ 146 (244)
T 1edo_A 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNI------------ 146 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT------------
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCC------------
Confidence 68999999997432 122345578899999999999988663 1457999999987666321
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.+|.+.+.+++.++.+ .|++++++|||.++++...... ...........+ ...
T Consensus 147 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~-----~~~ 208 (244)
T 1edo_A 147 ----------GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLG---EDMEKKILGTIP-----LGR 208 (244)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC---HHHHHHHHTSCT-----TCS
T ss_pred ----------CCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcC---hHHHHHHhhcCC-----CCC
Confidence 1245999999999999998876 4899999999999987432211 122222222222 235
Q ss_pred ceeHHHHHHHHHHhhcCCC---CCC-cEEEec
Q 020266 230 WVNVKDVANAHIQAFEVPS---ANG-RYCLVE 257 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~---~~g-~~~~~~ 257 (328)
+++++|+|+++++++..+. ..| .|++.+
T Consensus 209 ~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~g 240 (244)
T 1edo_A 209 TGQPENVAGLVEFLALSPAASYITGQAFTIDG 240 (244)
T ss_dssp CBCHHHHHHHHHHHHHCSGGGGCCSCEEEEST
T ss_pred CCCHHHHHHHHHHHhCCCccCCcCCCEEEeCC
Confidence 8899999999999984332 245 566654
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=194.63 Aligned_cols=220 Identities=14% Similarity=0.140 Sum_probs=157.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||++++++|+++|++|++++|+.+ ......+.. ...++.++.+|++|++++.++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIAR--HGVKAVHHPADLSDVAQIEALFALAEREF 77 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHT--TSCCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHh--cCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999876 222222211 13468889999999999888886
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++ ++. +.++||++||.+++.+.+
T Consensus 78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~---------- 146 (255)
T 2q2v_A 78 GGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR-NWGRIINIASVHGLVGST---------- 146 (255)
T ss_dssp SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTSCCT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcCchhccCCC----------
Confidence 79999999996432 223345678999999888877765 344 567999999986654211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHH---H----HHHHhCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAA---V----LSLIKGA 220 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~---~----~~~~~~~ 220 (328)
....|+.+|.+.+.+.+.++.+. |+++++++||.+++|............ . ......
T Consensus 147 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~- 213 (255)
T 2q2v_A 147 ------------GKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAE- 213 (255)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHHTT-
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccccccccchHHHHHHHHhc-
Confidence 12459999999999999998874 799999999999987422100000000 0 111011
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
......+++++|+|+++++++..+. ..| .|++.+
T Consensus 214 ---~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdg 250 (255)
T 2q2v_A 214 ---KQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDG 250 (255)
T ss_dssp ---TCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ---cCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECC
Confidence 1223468999999999999987542 346 566654
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=193.83 Aligned_cols=222 Identities=13% Similarity=0.026 Sum_probs=159.9
Q ss_pred cCCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|+++||||+ |+||+++++.|+++|++|++++|+.+....+..+.... +++.++.+|++|++++.++++
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~ 94 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGF---GSDLVVKCDVSLDEDIKNLKKFLE 94 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHH
Confidence 3567899999999 99999999999999999999999864222222222211 236789999999998887775
Q ss_pred ----CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCC
Q 020266 81 ----GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 ----~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+.. ..++||++||.++..+.+
T Consensus 95 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 169 (285)
T 2p91_A 95 ENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVP----- 169 (285)
T ss_dssp HHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBCT-----
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCCC-----
Confidence 68999999997432 2233456789999999999999998752 236999999976554211
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.+|..... ..............+
T Consensus 170 -----------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~p- 230 (285)
T 2p91_A 170 -----------------HYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSI-TGFHLLMEHTTKVNP- 230 (285)
T ss_dssp -----------------TTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--C-TTHHHHHHHHHHHST-
T ss_pred -----------------CccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcc-cchHHHHHHHHhcCC-
Confidence 12459999999999999998774 89999999999999864321 112223333322222
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
...+.+++|+|+++++++.... ..| .|++.++
T Consensus 231 ----~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg 265 (285)
T 2p91_A 231 ----FGKPITIEDVGDTAVFLCSDWARAITGEVVHVDNG 265 (285)
T ss_dssp ----TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ----CCCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence 1247799999999999987432 256 5566543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=194.85 Aligned_cols=224 Identities=17% Similarity=0.189 Sum_probs=160.4
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|+++..+++|+++||||+|+||+++++.|+++|++|++++|+.+....+.... .++.++.+|++|++++.++++
T Consensus 1 M~~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~ 74 (270)
T 1yde_A 1 MATGTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVS 74 (270)
T ss_dssp ---CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------cCCeEEEcCCCCHHHHHHHHH
Confidence 77777778999999999999999999999999999999999865544332221 247889999999998887775
Q ss_pred -------CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCC
Q 020266 81 -------GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 -------~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||.++.++.+
T Consensus 75 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 149 (270)
T 1yde_A 75 ETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQA----- 149 (270)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCT-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCCC-----
Confidence 68999999996432 1223356788999999999999886531 236899999987666321
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCC---CCcchHHHHHHHHhC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQP---TLNTSAAAVLSLIKG 219 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~~~ 219 (328)
....|+.+|.+.+.+++.++.+ +|+++++++||.+++|.... ........+......
T Consensus 150 -----------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 212 (270)
T 1yde_A 150 -----------------QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLA 212 (270)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHT
T ss_pred -----------------CCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhc
Confidence 1245999999999999999876 58999999999999973210 000011111211221
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCC-CCCC-cEEEec
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVP-SANG-RYCLVE 257 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~-~~~g-~~~~~~ 257 (328)
.| ...+.+++|+|+++++++... ...| .+++.+
T Consensus 213 ~p-----~~r~~~p~dva~~v~~L~s~~~~itG~~i~vdG 247 (270)
T 1yde_A 213 QP-----LGRMGQPAEVGAAAVFLASEANFCTGIELLVTG 247 (270)
T ss_dssp ST-----TSSCBCHHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred CC-----CCCCcCHHHHHHHHHHHcccCCCcCCCEEEECC
Confidence 11 224789999999999888642 2356 555554
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=202.25 Aligned_cols=235 Identities=15% Similarity=0.136 Sum_probs=170.2
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecC----------CCChhhhhhhhhccCCCCcEEEEEccCCCcC
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD----------PNDPKKTRHLLALDGASERLQLFKANLLEEG 73 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 73 (328)
|..+++|++|||||+|+||+++++.|+++|++|++++|+ .+....+...+.. ...++.++.+|++|++
T Consensus 22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~ 99 (322)
T 3qlj_A 22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITA--AGGEAVADGSNVADWD 99 (322)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHH--TTCEEEEECCCTTSHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHh--cCCcEEEEECCCCCHH
Confidence 445678999999999999999999999999999999987 3333333222222 2357889999999999
Q ss_pred chHHhhC-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCCC---------ccEEEEecc
Q 020266 74 SFDSIVD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPS---------IKRVVLTSS 132 (328)
Q Consensus 74 ~~~~~~~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~---------~~~~v~~SS 132 (328)
++.++++ ++|+||||||.... ...+.+...+++|+.++.++++++.+... .++||++||
T Consensus 100 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS 179 (322)
T 3qlj_A 100 QAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSS 179 (322)
T ss_dssp HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcC
Confidence 8887776 78999999997432 23345667899999999999998765311 158999999
Q ss_pred hhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcch
Q 020266 133 MAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTS 209 (328)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~ 209 (328)
.++..+.+ ....|+.||.+.+.+++.++.+ +|+++++|+|| +..+.........
T Consensus 180 ~~~~~~~~----------------------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~ 236 (322)
T 3qlj_A 180 GAGLQGSV----------------------GQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEM 236 (322)
T ss_dssp HHHHHCBT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC-
T ss_pred HHHccCCC----------------------CCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhh
Confidence 87766321 1245999999999999999887 58999999999 7665433221110
Q ss_pred HHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC------------------ccCHHHHHHH
Q 020266 210 AAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER------------------VSHYSEIVNI 268 (328)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~------------------~~~~~el~~~ 268 (328)
.. .+.....+++++|+|.++++++.... ..| .+++.++ .+++.|+++.
T Consensus 237 ---~~--------~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~ 305 (322)
T 3qlj_A 237 ---MA--------TQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPV 305 (322)
T ss_dssp ------------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHH
T ss_pred ---hh--------ccccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHH
Confidence 00 01223456789999999999987542 245 5566542 2377999999
Q ss_pred HHHhCC
Q 020266 269 IRELYP 274 (328)
Q Consensus 269 i~~~~~ 274 (328)
+.+.++
T Consensus 306 ~~~~~~ 311 (322)
T 3qlj_A 306 VADLLG 311 (322)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988876
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=193.06 Aligned_cols=207 Identities=19% Similarity=0.184 Sum_probs=150.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
|++|+|+||||+|+||+++++.|+++| ++|++++|+.++.+.+... ...++.++.+|++|++++.++++
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-----KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC-----CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhc-----cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999 9999999987665443222 24579999999999998888776
Q ss_pred -----CccEEEEccCCCC-C-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---------C-----ccEEEEecchhh
Q 020266 81 -----GCDGVCHTASPFY-H-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---------S-----IKRVVLTSSMAA 135 (328)
Q Consensus 81 -----~~d~vih~a~~~~-~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~-----~~~~v~~SS~~~ 135 (328)
++|+||||||... . ...+.+...+++|+.++.++++++.+.. + .++||++||..+
T Consensus 76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 155 (250)
T 1yo6_A 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcc
Confidence 7999999999754 1 1223345788999999999999876531 2 578999999766
Q ss_pred hccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHH
Q 020266 136 VLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAA 212 (328)
Q Consensus 136 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~ 212 (328)
+.+.. .+..+.. +...|+.+|.+.+.+++.++.++ |+++++++||.+.++....
T Consensus 156 ~~~~~---------~~~~~~~------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------- 212 (250)
T 1yo6_A 156 SITDN---------TSGSAQF------PVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK-------- 212 (250)
T ss_dssp CSTTC---------CSTTSSS------CBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC---------------
T ss_pred ccCCc---------ccccccC------CccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC--------
Confidence 55321 0111111 23569999999999999998875 8999999999998874211
Q ss_pred HHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEe
Q 020266 213 VLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLV 256 (328)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~ 256 (328)
..+++++|+|+.++.++.... ..|.|...
T Consensus 213 ---------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~ 243 (250)
T 1yo6_A 213 ---------------NAALTVEQSTAELISSFNKLDNSHNGRFFMR 243 (250)
T ss_dssp ---------------------HHHHHHHHHHHTTCCGGGTTCEEET
T ss_pred ---------------CCCCCHHHHHHHHHHHHhcccccCCCeEEEE
Confidence 136799999999999998754 35666544
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-26 Score=196.23 Aligned_cols=221 Identities=14% Similarity=0.119 Sum_probs=162.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh-hhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|++|||||+|+||+++++.|+++|++|++++|+..... ........ ...++.++.+|++|++++.++++
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEK--EGVKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT--TTCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999865422 22222222 23578999999999998887775
Q ss_pred ---CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 ---GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 ---~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+.. ..++||++||.+++.+.+
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 191 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNE---------- 191 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCT----------
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCC----------
Confidence 68999999986422 1334566889999999999999998862 345899999987665321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+.+.+++.++.++ |+++++++||.|.+|...... .......... ....
T Consensus 192 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~-----~~p~ 252 (291)
T 3ijr_A 192 ------------TLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSF--DEKKVSQFGS-----NVPM 252 (291)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHS--CHHHHHHTTT-----TSTT
T ss_pred ------------CChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccC--CHHHHHHHHc-----cCCC
Confidence 12459999999999999998875 899999999999987421100 0111111111 1233
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
..+.+++|+|+++++++.... ..| .+++.+
T Consensus 253 ~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG 285 (291)
T 3ijr_A 253 QRPGQPYELAPAYVYLASSDSSYVTGQMIHVNG 285 (291)
T ss_dssp SSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred CCCcCHHHHHHHHHHHhCCccCCCcCCEEEECC
Confidence 458899999999999987542 356 455544
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=189.36 Aligned_cols=228 Identities=17% Similarity=0.093 Sum_probs=168.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
++++|+++||||++.||+++++.|+++|++|++.+|+.+..+.+...+... ..++.++++|++|+++++++++
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM--GKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999887766655554433 3578999999999999887775
Q ss_pred --CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|++|||||... +...+.|+..+++|+.|+.++.+++.+.+ +.+++|++||+++..+.+
T Consensus 82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~--------- 152 (254)
T 4fn4_A 82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGF--------- 152 (254)
T ss_dssp HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSS---------
T ss_pred cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCC---------
Confidence 6899999998532 22345677899999999999988876642 457899999987655321
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.||.+...+.+.++.+. |+++++|-||.|-.|....................+.
T Consensus 153 -------------~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~---- 215 (254)
T 4fn4_A 153 -------------AGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSL---- 215 (254)
T ss_dssp -------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTT----
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCC----
Confidence 12459999999999999998874 8999999999998875332222112222222221111
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCCcEEEecCccC
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~~ 261 (328)
...+..++|+|.++++++.... ..|....+++.+|
T Consensus 216 ~~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG~t 252 (254)
T 4fn4_A 216 SSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLT 252 (254)
T ss_dssp CCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCCcc
Confidence 1236789999999999987532 3675555554444
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=199.54 Aligned_cols=223 Identities=14% Similarity=0.118 Sum_probs=164.1
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|++|||||+|+||+++++.|+++|++|++++|+.+........+... ..++.++.+|++|++++.++++
T Consensus 22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNV--GHDAEAVAFDVTSESEIIEAFARLDE 99 (271)
T ss_dssp GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999876655544433222 3578999999999999888776
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. +.++||++||.++..+.+
T Consensus 100 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~--------- 170 (271)
T 4ibo_A 100 QGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARA--------- 170 (271)
T ss_dssp HTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCT---------
T ss_pred HCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCC---------
Confidence 68999999997432 2334556789999999999988776531 446899999977655321
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.+.++...... .............|
T Consensus 171 -------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~p----- 231 (271)
T 4ibo_A 171 -------------TVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALI-DNPEFDAWVKARTP----- 231 (271)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-HCHHHHHHHHHHST-----
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcc-cCHHHHHHHHhcCC-----
Confidence 1355999999999999999887 4899999999999987432100 00122222222222
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++.... ..| .+++.+
T Consensus 232 ~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdG 265 (271)
T 4ibo_A 232 AKRWGKPQELVGTAVFLSASASDYVNGQIIYVDG 265 (271)
T ss_dssp TCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCCCcEEEECC
Confidence 2357889999999999887532 356 556654
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=192.73 Aligned_cols=214 Identities=15% Similarity=0.086 Sum_probs=156.7
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
+..+++|+||||||+|+||+++++.|+++|++|++++|+.++ ..++.++.+|++|++++.++++
T Consensus 3 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~ 69 (264)
T 2dtx_A 3 FSDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-------------EAKYDHIECDVTNPDQVKASIDHIF 69 (264)
T ss_dssp CGGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-------------SCSSEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-------------CCceEEEEecCCCHHHHHHHHHHHH
Confidence 445678999999999999999999999999999999997654 1357889999999998887776
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 70 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 141 (264)
T 2dtx_A 70 KEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITK-------- 141 (264)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCCT--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCCC--------
Confidence 68999999996432 123345678999999999998887653 1457999999976554211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcC--ccEEEEcCCcccCCCCCCCCc----chH----HHHHHHHh
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS--IDLVTINPAMVIGPLLQPTLN----TSA----AAVLSLIK 218 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~----~~~----~~~~~~~~ 218 (328)
....|+.||.+.+.+++.++.+++ +++++++||.+.++....... ... ........
T Consensus 142 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (264)
T 2dtx_A 142 --------------NASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGH 207 (264)
T ss_dssp --------------TBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred --------------CchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHh
Confidence 135699999999999999988765 899999999998763211000 000 11111222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.. ....+++++|+|+++++++.... ..| .+++.+
T Consensus 208 ~~-----p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 244 (264)
T 2dtx_A 208 EH-----PMQRIGKPQEVASAVAFLASREASFITGTCLYVDG 244 (264)
T ss_dssp HS-----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cC-----CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECC
Confidence 11 12458999999999999987542 356 455544
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=194.77 Aligned_cols=220 Identities=16% Similarity=0.132 Sum_probs=158.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+|+||||+|+||+++++.|+++|++|++++|+.++...+...+.. ...++.++.+|++|++++.++++
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 118 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS--FGYESSGYAGDVSKKEEISEVINKILTE 118 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh--cCCceeEEECCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999999999999999999988876554443332222 13478899999999998888774
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++++.+
T Consensus 119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 188 (285)
T 2c07_A 119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNV---------- 188 (285)
T ss_dssp CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCC----------
Confidence 68999999997432 123345578899999988888877642 1457999999987666321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.+. |+++++++||.+.++..... ............+ .
T Consensus 189 ------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~-----~ 248 (285)
T 2c07_A 189 ------------GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI---SEQIKKNIISNIP-----A 248 (285)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C---CHHHHHHHHTTCT-----T
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhc---CHHHHHHHHhhCC-----C
Confidence 12459999999999999988764 89999999999998854321 1122222322222 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
..+++++|+|++++.++..+. ..| .+++.+
T Consensus 249 ~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~g 281 (285)
T 2c07_A 249 GRMGTPEEVANLACFLSSDKSGYINGRVFVIDG 281 (285)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCC
Confidence 348999999999999987542 356 556654
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=191.64 Aligned_cols=218 Identities=12% Similarity=0.122 Sum_probs=151.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+. ++... .+.. ...++.++.+|++|++++.++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRN--LGRRVLTVKCDVSQPGDVEAFGKQVIS 78 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHH--TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHh--cCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999986 33222 1111 13478899999999998887754
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.... ...+.+...+++|+.++.++++++. +. +.++||++||.+++.+.+
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~-------- 149 (249)
T 2ew8_A 79 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN-GWGRIINLTSTTYWLKIE-------- 149 (249)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGGSCCS--------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhhccCCC--------
Confidence 78999999997432 2233455789999999988888754 33 457999999976554211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++....... .. ....... .. .
T Consensus 150 --------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~-~~~~~~~--~~-~ 209 (249)
T 2ew8_A 150 --------------AYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASAL--SA-MFDVLPN--ML-Q 209 (249)
T ss_dssp --------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC---------------------C--TT-S
T ss_pred --------------CchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccc--cc-hhhHHHH--hh-C
Confidence 12559999999999999998864 8999999999999875321100 00 0000110 10 1
Q ss_pred CCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
....+.+++|+|+++++++... ...| .+++.+
T Consensus 210 ~~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdG 244 (249)
T 2ew8_A 210 AIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDG 244 (249)
T ss_dssp SSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESS
T ss_pred ccCCCCCHHHHHHHHHHHcCcccCCCCCcEEEECC
Confidence 2235889999999999998753 2356 445544
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-26 Score=194.25 Aligned_cols=232 Identities=14% Similarity=0.033 Sum_probs=162.9
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|+++ .+++|+++||||+|+||+++++.|+++|++|++++|+.++.......+.......++.++.+|++|++++.++++
T Consensus 1 M~~~-~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 79 (265)
T 3lf2_A 1 MKPY-DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAE 79 (265)
T ss_dssp --CC-CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCcc-CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHH
Confidence 4444 467899999999999999999999999999999999876655544443322223458999999999998877765
Q ss_pred -------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCC
Q 020266 81 -------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 -------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
++|++|||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 80 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 154 (265)
T 3lf2_A 80 ACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEP----- 154 (265)
T ss_dssp HHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCT-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCC-----
Confidence 68999999997322 223445678999999999999988653 1456899999976654211
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC------CcchHHHHHHH
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT------LNTSAAAVLSL 216 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~------~~~~~~~~~~~ 216 (328)
....|+.||.+.+.+++.++.++ |+++++++||.+.+|..... .......+...
T Consensus 155 -----------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 217 (265)
T 3lf2_A 155 -----------------HMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQ 217 (265)
T ss_dssp -----------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHH
T ss_pred -----------------CchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHH
Confidence 13569999999999999998875 89999999999988631100 00001111111
Q ss_pred HhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 217 IKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 217 ~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
..... ......+.+++|+|+++++++... ...| .+++.+
T Consensus 218 ~~~~~--~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdG 259 (265)
T 3lf2_A 218 LARNK--QIPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSG 259 (265)
T ss_dssp HHHHT--TCTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESS
T ss_pred Hhhcc--CCCcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECC
Confidence 11100 012235789999999999998753 2366 445543
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=194.40 Aligned_cols=224 Identities=17% Similarity=0.109 Sum_probs=163.2
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|++|||||+|+||+++++.|+++|++|++++|+.++.......+... ...++.++++|++|++++.++++
T Consensus 16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQ-FGTDVHTVAIDLAEPDAPAELARRAAE 94 (266)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HCCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999876655543333221 13578999999999999887775
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC----CccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. ..+++|++||.+++.+.+
T Consensus 95 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 166 (266)
T 4egf_A 95 AFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLP-------- 166 (266)
T ss_dssp HHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT--------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCC--------
Confidence 78999999997432 2233456788999999999999876531 245899999986554211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+++.++.+ +|+++++|+||.|.++....... ............
T Consensus 167 --------------~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~----- 226 (266)
T 4egf_A 167 --------------DHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG-DEAKSAPMIARI----- 226 (266)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC-SHHHHHHHHTTC-----
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc-ChHHHHHHHhcC-----
Confidence 1255999999999999999887 48999999999998874211000 112222333322
Q ss_pred CCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
....+.+++|+|+++++++... ...| .+++.+
T Consensus 227 p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdG 261 (266)
T 4egf_A 227 PLGRFAVPHEVSDAVVWLASDAASMINGVDIPVDG 261 (266)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECC
Confidence 2345789999999999998753 2356 555544
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=194.41 Aligned_cols=228 Identities=15% Similarity=0.153 Sum_probs=161.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+|+||||+|+||++++++|+++|++|++++|+..+.......+... ...++.++.+|++|++++.++++
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE-FGVKTKAYQCDVSNTDIVTKTIQQIDADL 90 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH-HTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHh-cCCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999766543322211111 12468999999999998877765
Q ss_pred -CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+||||||..... ..+.+...+++|+.++.++++++.+. ...++||++||.+++.+... .
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------~-- 162 (265)
T 1h5q_A 91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS------S-- 162 (265)
T ss_dssp CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE------E--
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc------c--
Confidence 489999999974321 22345567899999999999988653 12478999999766552110 0
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
..+. .+...|+.+|.+.+.+++.++.+. |++++++|||.++++..... ............+ .
T Consensus 163 -~~~~------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~-----~ 227 (265)
T 1h5q_A 163 -LNGS------LTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM---DKKIRDHQASNIP-----L 227 (265)
T ss_dssp -TTEE------CSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS---CHHHHHHHHHTCT-----T
T ss_pred -cccc------ccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc---chhHHHHHHhcCc-----c
Confidence 0000 123569999999999999998764 89999999999999854321 1122222222222 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
..+++++|+|+++++++..+. ..| .|++.++
T Consensus 228 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 261 (265)
T 1h5q_A 228 NRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 261 (265)
T ss_dssp SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred cCCCCHHHHHHHHHhhccCchhcCcCcEEEecCC
Confidence 348899999999999987542 345 6676653
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-26 Score=193.15 Aligned_cols=219 Identities=16% Similarity=0.152 Sum_probs=156.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+|+||||+|+||++++++|+++|++|++++|+.+....+..... ...++.++.+|++|++++.++++
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh---ccCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999998654443322221 12478999999999998887775
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCc-cEEEEecchhhhccCCCCCCCCcc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSI-KRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
.+|+||||||.... ...+.+...+++|+.++.++++++. +. +. ++||++||.+++.+.+
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~~iv~isS~~~~~~~~-------- 150 (251)
T 1zk4_A 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNK-GLGASIINMSSIEGFVGDP-------- 150 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEEECCGGGTSCCT--------
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCCEEEEeCCchhccCCC--------
Confidence 48999999996432 1223345788999998887776654 33 44 7999999976554211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHH-----hcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK-----EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.+|.+.+.+++.++. ..+++++++|||.+++|....... .........
T Consensus 151 --------------~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~---- 209 (251)
T 1zk4_A 151 --------------SLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG---AEEAMSQRT---- 209 (251)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT---HHHHHTSTT----
T ss_pred --------------CCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCc---hhhhHHHhh----
Confidence 125599999999999998876 358999999999999984322110 111110111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
......+++++|+|+++++++.+.. ..| .+++.+
T Consensus 210 ~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 246 (251)
T 1zk4_A 210 KTPMGHIGEPNDIAYICVYLASNESKFATGSEFVVDG 246 (251)
T ss_dssp TCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCCCCCCcCHHHHHHHHHHHcCcccccccCcEEEECC
Confidence 1123458999999999999987542 346 556654
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=191.92 Aligned_cols=216 Identities=16% Similarity=0.104 Sum_probs=156.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCe-EEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCc-CchHHhhC----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVD---- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~---- 80 (328)
+++|+|+||||+|+||++++++|+++|++ |++++|+... ..+..+.... ...++.++.+|++|+ +++.++++
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~-~~~~~l~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-TALAELKAIN-PKVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHHHHHHHC-TTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH-HHHHHHHHhC-CCceEEEEEEecCCChHHHHHHHHHHHH
Confidence 56889999999999999999999999997 9999998642 2222222221 134788999999998 77776665
Q ss_pred ---CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC---C---ccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 ---GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP---S---IKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ---~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~---~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||... .+.+...+++|+.++.++++++.+.. + .++||++||.+++.+.+
T Consensus 81 ~~g~id~lv~~Ag~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 146 (254)
T 1sby_A 81 QLKTVDILINGAGILD---DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIH----------- 146 (254)
T ss_dssp HHSCCCEEEECCCCCC---TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT-----------
T ss_pred hcCCCCEEEECCccCC---HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCC-----------
Confidence 7899999999753 34466889999999999999887531 1 35799999976554211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcch--HHHHHHHHhCCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTS--AAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 226 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.+.++......... ...+......
T Consensus 147 -----------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------- 208 (254)
T 1sby_A 147 -----------QVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS------- 208 (254)
T ss_dssp -----------TSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT-------
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHhc-------
Confidence 1245999999999999998876 5899999999999987422110000 0111222221
Q ss_pred CccceeHHHHHHHHHHhhcCCCCCC-cEEEecC
Q 020266 227 TFGWVNVKDVANAHIQAFEVPSANG-RYCLVER 258 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~~ 258 (328)
..+.+++|+|++++.++... ..| .|++.++
T Consensus 209 -~~~~~~~dvA~~i~~~~~~~-~~G~~~~v~gG 239 (254)
T 1sby_A 209 -HPTQTSEQCGQNFVKAIEAN-KNGAIWKLDLG 239 (254)
T ss_dssp -SCCEEHHHHHHHHHHHHHHC-CTTCEEEEETT
T ss_pred -CCCCCHHHHHHHHHHHHHcC-CCCCEEEEeCC
Confidence 13459999999999998743 445 6777653
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-26 Score=195.56 Aligned_cols=232 Identities=16% Similarity=0.078 Sum_probs=160.3
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|..+++|+++||||+|+||+++++.|+++|++|++++|+.+....+...+.. ...++.++.+|++|++++.++++
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG--AGGQAIALEADVSDELQMRNAVRDLV 100 (283)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 3345678999999999999999999999999999999987665554443322 23578999999999998887775
Q ss_pred ----CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ----~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|++|||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.++....+.
T Consensus 101 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~------ 174 (283)
T 3v8b_A 101 LKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTT------ 174 (283)
T ss_dssp HHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCS------
T ss_pred HHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCCCC------
Confidence 68999999996421 223345678999999999999988432 14579999999765431110
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTY 223 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~ 223 (328)
+ ....|+.||.+.+.+++.++.+ +|+++++++||.+.++.................... ...
T Consensus 175 ---------~-----~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (283)
T 3v8b_A 175 ---------P-----GATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQV 240 (283)
T ss_dssp ---------T-----TCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSC
T ss_pred ---------C-----CchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcC
Confidence 0 2355999999999999999987 479999999999998864332111100000000000 000
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCCc-EEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~-~~~~~ 257 (328)
|-....+..++|+|+++++++.... ..|. +++.+
T Consensus 241 p~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG 277 (283)
T 3v8b_A 241 PITDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDG 277 (283)
T ss_dssp GGGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ccccCCCCCHHHHHHHHHHHcCccccCCcCCEEEECc
Confidence 1111357899999999999987532 3564 44443
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=190.35 Aligned_cols=219 Identities=17% Similarity=0.156 Sum_probs=158.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|+++||||+|+||++++++|+++|++|++++| +.++...+...+... ..++.++.+|++|++++.++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL--GSDAIAVRADVANAEDVTNMVKQTVDV 79 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998 544433333322221 3468899999999998888776
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++.++.+
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 149 (246)
T 2uvd_A 80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNP---------- 149 (246)
T ss_dssp HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCC----------
Confidence 79999999997432 223345678999999988887776542 1457999999987666311
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+.+.+.+.++.+ +|+++++++||.+.++....... ..........+ .
T Consensus 150 ------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~~p-----~ 209 (246)
T 2uvd_A 150 ------------GQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDE---NIKAEMLKLIP-----A 209 (246)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCT---THHHHHHHTCT-----T
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCH---HHHHHHHhcCC-----C
Confidence 1245999999999999988875 48999999999999885332111 11222222222 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
..+++++|+|+++++++.... ..| .+++.+
T Consensus 210 ~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdg 242 (246)
T 2uvd_A 210 AQFGEAQDIANAVTFFASDQSKYITGQTLNVDG 242 (246)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHcCchhcCCCCCEEEECc
Confidence 348899999999999987532 356 455544
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=206.93 Aligned_cols=221 Identities=14% Similarity=0.135 Sum_probs=158.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CC--hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-ND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+||+|+|||||||||++++++|+++|++|++++|+. .. ......+... ...+++++.+|++|++++.++++++|+
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~--~~~~v~~v~~D~~d~~~l~~a~~~~d~ 80 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEF--RSMGVTIIEGEMEEHEKMVSVLKQVDI 80 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHH--HHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHh--hcCCcEEEEecCCCHHHHHHHHcCCCE
Confidence 357899999999999999999999999999999986 21 1111111000 124689999999999999999999999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
|||+|+... +.++.+++++|++. + +++||+ |+ +|.. .+|..+..|.
T Consensus 81 vi~~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~----~g~~--------~~~~~~~~p~----- 127 (321)
T 3c1o_A 81 VISALPFPM--------------ISSQIHIINAIKAA-GNIKRFLP-SD----FGCE--------EDRIKPLPPF----- 127 (321)
T ss_dssp EEECCCGGG--------------SGGGHHHHHHHHHH-CCCCEEEC-SC----CSSC--------GGGCCCCHHH-----
T ss_pred EEECCCccc--------------hhhHHHHHHHHHHh-CCccEEec-cc----cccC--------ccccccCCCc-----
Confidence 999998521 34568999999987 6 889882 32 2211 1232222221
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHH---HHHhCCC--CC--CCCCccceeHHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVL---SLIKGAQ--TY--PNVTFGWVNVKDV 236 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~---~~~~~~~--~~--~~~~~~~v~v~D~ 236 (328)
.+.| .+|..+|.+++. .+++++++||+.++++.. ..+.. ....++. .+ ++..++|++++|+
T Consensus 128 ~~~y-~sK~~~e~~~~~----~~~~~~~lrp~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dv 195 (321)
T 3c1o_A 128 ESVL-EKKRIIRRAIEA----AALPYTYVSANCFGAYFV-------NYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDI 195 (321)
T ss_dssp HHHH-HHHHHHHHHHHH----HTCCBEEEECCEEHHHHH-------HHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHH
T ss_pred chHH-HHHHHHHHHHHH----cCCCeEEEEeceeccccc-------cccccccccccccCceEEecCCCcceeEeeHHHH
Confidence 2459 999999998864 479999999998887521 11110 0011221 22 4667899999999
Q ss_pred HHHHHHhhcCCCCCC-cEEEe--cCccCHHHHHHHHHHhCCC
Q 020266 237 ANAHIQAFEVPSANG-RYCLV--ERVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 237 a~~~~~~~~~~~~~g-~~~~~--~~~~~~~el~~~i~~~~~~ 275 (328)
|++++.++.++...| .|++. ++.+|+.|+++.+.+.+|.
T Consensus 196 a~~~~~~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~ 237 (321)
T 3c1o_A 196 AKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGL 237 (321)
T ss_dssp HHHHHHHHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcCC
Confidence 999999998865445 67665 3789999999999999874
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=191.87 Aligned_cols=224 Identities=17% Similarity=0.089 Sum_probs=160.3
Q ss_pred cccCCCCeEEEECCcc-HHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 4 VAAAAGKVVCVTGASG-YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
|..+++|+++||||+| .||++++++|+++|++|++++|+.++.......+... ...++.++.+|++|++++.++++
T Consensus 17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL-GLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-CSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-CCCceEEEEeCCCCHHHHHHHHHHH
Confidence 4456789999999998 6999999999999999999999876655544433222 23579999999999998887775
Q ss_pred -----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCC
Q 020266 81 -----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 -----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------ 169 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQH------ 169 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCT------
T ss_pred HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCC------
Confidence 67999999997432 223345678999999999999987664 1446899999976554211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ..........
T Consensus 170 ----------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~----- 226 (266)
T 3o38_A 170 ----------------SQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTS--SSELLDRLAS----- 226 (266)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------------------------
T ss_pred ----------------CCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccC--cHHHHHHHHh-----
Confidence 2355999999999999999887 5899999999999887533211 0111111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
......+.+++|+|+++++++... ...| .+++.+
T Consensus 227 ~~~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdg 263 (266)
T 3o38_A 227 DEAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSS 263 (266)
T ss_dssp CCTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred cCCcCCCCCHHHHHHHHHHHcCccccCccCCEEEEcC
Confidence 123456889999999999998753 2356 455544
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-26 Score=193.62 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=156.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.+. ...+...+... ...++.++.+|++|++++.++++
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ-HGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH-HTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhc-cCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999998755 44333322111 02468899999999998887775
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 150 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASA---------- 150 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCC----------
Confidence 68999999996432 223345678999999999999888643 1457999999986654211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcch--------HHHHHHH-Hh
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTS--------AAAVLSL-IK 218 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~--------~~~~~~~-~~ 218 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.+|......... ....... ..
T Consensus 151 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (260)
T 1x1t_A 151 ------------NKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSE 218 (260)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHH
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhc
Confidence 12459999999999999998764 899999999999998533211000 0011111 11
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
. .....+.+++|+|+++++++... ...| .+++.+
T Consensus 219 ~-----~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdg 255 (260)
T 1x1t_A 219 K-----QPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDG 255 (260)
T ss_dssp H-----CTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred c-----CCCCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECC
Confidence 1 12245889999999999998753 2356 555544
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-26 Score=191.99 Aligned_cols=219 Identities=18% Similarity=0.165 Sum_probs=160.7
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
+.+++|+++||||+|+||+++++.|+++|++|++++|+.+....+.... ..++.++.+|++|++++.++++
T Consensus 2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999876554433322 3578999999999998888776
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhc----CCCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAK----FPSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+ .+..+++|++||.+...+.+
T Consensus 77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 148 (247)
T 3rwb_A 77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTP-------- 148 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCT--------
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCC--------
Confidence 78999999997432 22344567899999999999998543 32257999999987665321
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.+.++............+.....
T Consensus 149 --------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~------- 207 (247)
T 3rwb_A 149 --------------NMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEMLQ------- 207 (247)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHHS-------
T ss_pred --------------CchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhccc-------
Confidence 1355999999999999999887 5899999999999886422111111111111111
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....+.+++|+|+++.+++.... ..| .+++.+
T Consensus 208 ~~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdG 242 (247)
T 3rwb_A 208 AMKGKGQPEHIADVVSFLASDDARWITGQTLNVDA 242 (247)
T ss_dssp SSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ccCCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 12346789999999999987542 356 445544
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-26 Score=196.18 Aligned_cols=216 Identities=18% Similarity=0.188 Sum_probs=152.1
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|..+++|+||||||+|+||+++++.|+++|++|++++|+..+...+...+.......++.++.+|++|++++.++++
T Consensus 27 m~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 27 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999876554443333322223468899999999998887775
Q ss_pred ----CccEEEEccCCCCCC-----CCCcchhhhhHHHHH----HHHHHHHHhcCCCc--cEEEEecchhhhccCCCCCCC
Q 020266 81 ----GCDGVCHTASPFYHD-----AKDPQVELLDPAVKG----TLNVLNSCAKFPSI--KRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 ----~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~----~~~l~~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~~ 145 (328)
++|+||||||..... ..+.+...+++|+.+ ++.++..+++. +. ++||++||.++....+
T Consensus 107 ~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~-~~~~g~iv~isS~~~~~~~~----- 180 (279)
T 1xg5_A 107 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKER-NVDDGHIININSMSGHRVLP----- 180 (279)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCSCEEEEECCGGGTSCCS-----
T ss_pred HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCceEEEEcChhhcccCC-----
Confidence 799999999964321 223455788999999 55666666665 43 7999999976442100
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh-----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~ 220 (328)
.+ ....|+.+|.+.+.+++.++.+ .++++++++||.+.++............+....
T Consensus 181 ----------~~-----~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~--- 242 (279)
T 1xg5_A 181 ----------LS-----VTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY--- 242 (279)
T ss_dssp ----------CG-----GGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH---
T ss_pred ----------CC-----CCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccChhHHhhhc---
Confidence 01 2356999999999999988765 379999999999988741100000001111110
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
....+++++|+|++++.++..+.
T Consensus 243 -----~~~~~~~~~dvA~~i~~l~~~~~ 265 (279)
T 1xg5_A 243 -----EQMKCLKPEDVAEAVIYVLSTPA 265 (279)
T ss_dssp -----C---CBCHHHHHHHHHHHHHSCT
T ss_pred -----ccccCCCHHHHHHHHHHHhcCCc
Confidence 11247899999999999998653
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-26 Score=192.10 Aligned_cols=210 Identities=15% Similarity=0.104 Sum_probs=148.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.++.+.+...+... ..++.++.+|++|++++.++++
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA--GGRIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 56899999999999999999999999999999999887766655544332 3578999999999999888776
Q ss_pred CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 ~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|++|||||.... ...+.+...+++|+.|+.++++++.+.. +.++||++||.++..+.+
T Consensus 83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 150 (252)
T 3h7a_A 83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGS------------ 150 (252)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCT------------
T ss_pred CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCC------------
Confidence 68999999997432 2234456789999999999998875431 446899999987655311
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccE-EEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDL-VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~-~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.||.+.+.+.+.++.+. |+++ +++.||.+.++...... ......... .....
T Consensus 151 ----------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~---~~~~~~~~~-----~~~~~ 212 (252)
T 3h7a_A 151 ----------GFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERR---EQMFGKDAL-----ANPDL 212 (252)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------------
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccc---hhhhhhhhh-----cCCcc
Confidence 13559999999999999998874 7999 89999999887533211 011111111 11123
Q ss_pred cceeHHHHHHHHHHhhcCCCC
Q 020266 229 GWVNVKDVANAHIQAFEVPSA 249 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~~ 249 (328)
+.+++|+|+++++++..+..
T Consensus 213 -~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 213 -LMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp --CCHHHHHHHHHHHHHCCGG
T ss_pred -CCCHHHHHHHHHHHHhCchh
Confidence 88999999999999986543
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=192.92 Aligned_cols=220 Identities=17% Similarity=0.141 Sum_probs=152.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||++++++|+++|++|++++|+.++...+.... ..++.++.+|++|++++.++++
T Consensus 6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (261)
T 3n74_A 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAVAADISKEADVDAAVEAALSK 80 (261)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999876655543332 3478999999999998887776
Q ss_pred --CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC-------CccEEEEecchhhhccCCCCCCC
Q 020266 81 --GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP-------SIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 --~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-------~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. ...++|++||.+...+.+
T Consensus 81 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~----- 155 (261)
T 3n74_A 81 FGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRP----- 155 (261)
T ss_dssp HSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCT-----
T ss_pred cCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCC-----
Confidence 68999999997431 1233455788999999999998876541 134699999976554211
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHH-HHHHHHhCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAA-AVLSLIKGAQ 221 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~-~~~~~~~~~~ 221 (328)
....|+.+|.+.+.+++.++.+ +++++++++||.+.++........... .......
T Consensus 156 -----------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~--- 215 (261)
T 3n74_A 156 -----------------NLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRD--- 215 (261)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------------
T ss_pred -----------------CccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHHhh---
Confidence 1345999999999999999887 489999999999998854322110011 1111111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
......+++++|+|+++++++.... ..| .+++.+
T Consensus 216 --~~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdg 252 (261)
T 3n74_A 216 --SIPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDG 252 (261)
T ss_dssp ---CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred --cCCcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecC
Confidence 1223468999999999999986432 356 556654
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=189.39 Aligned_cols=199 Identities=15% Similarity=0.117 Sum_probs=152.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-------eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
+|+|+||||+|+||++++++|+++|+ +|++++|+.++...+...+.. ...++.++.+|++|++++.++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~ 79 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA--EGALTDTITADISDMADVRRLTTH 79 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHc--cCCeeeEEEecCCCHHHHHHHHHH
Confidence 67899999999999999999999999 999999986554443332221 23578999999999998887775
Q ss_pred ------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCC
Q 020266 81 ------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------ 153 (244)
T 2bd0_A 80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFR------ 153 (244)
T ss_dssp HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------
T ss_pred HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCCC------
Confidence 69999999997432 123345678899999999999987542 1457999999976554211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
+.+.|+.+|.+.+.+++.++.+ +|++++++|||.+++|....... .
T Consensus 154 ----------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~------------~--- 202 (244)
T 2bd0_A 154 ----------------HSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD------------E--- 202 (244)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS------------T---
T ss_pred ----------------CCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc------------c---
Confidence 1255999999999999888764 58999999999999986432110 0
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
....+++++|+|++++.++..+.
T Consensus 203 --~~~~~~~~~dva~~~~~l~~~~~ 225 (244)
T 2bd0_A 203 --MQALMMMPEDIAAPVVQAYLQPS 225 (244)
T ss_dssp --TGGGSBCHHHHHHHHHHHHTSCT
T ss_pred --ccccCCCHHHHHHHHHHHHhCCc
Confidence 01358999999999999998653
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-26 Score=190.74 Aligned_cols=186 Identities=15% Similarity=0.096 Sum_probs=144.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC---ccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG---CDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~d~vi 86 (328)
|+|+||||+|+||++++++|+ +|++|++++|+.. .+.+|++|++++.++++. +|+||
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~~~~d~vi 63 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITNIDSIKKMYEQVGKVDAIV 63 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-------------------SEECCTTCHHHHHHHHHHHCCEEEEE
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-------------------ceeeecCCHHHHHHHHHHhCCCCEEE
Confidence 479999999999999999999 9999999999753 367999999998888874 89999
Q ss_pred EccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020266 87 HTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVC 160 (328)
Q Consensus 87 h~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 160 (328)
|+||..... ..+.+...+++|+.++.++++++.+.. +.++||++||.++..+.+
T Consensus 64 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~-------------------- 123 (202)
T 3d7l_A 64 SATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIV-------------------- 123 (202)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSCCT--------------------
T ss_pred ECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCCCC--------------------
Confidence 999964321 122334677899999999999998752 126899999975443110
Q ss_pred ccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHH
Q 020266 161 KQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238 (328)
Q Consensus 161 ~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 238 (328)
+...|+.+|.+.|.+++.++.+. +++++++||+.++++... ... ....+++++++|+|+
T Consensus 124 --~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~------------~~~-----~~~~~~~~~~~dva~ 184 (202)
T 3d7l_A 124 --QGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK------------LEP-----FFEGFLPVPAAKVAR 184 (202)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH------------HGG-----GSTTCCCBCHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh------------hhh-----hccccCCCCHHHHHH
Confidence 12459999999999999998764 899999999999998421 001 122467899999999
Q ss_pred HHHHhhcCCCCCC-cEEE
Q 020266 239 AHIQAFEVPSANG-RYCL 255 (328)
Q Consensus 239 ~~~~~~~~~~~~g-~~~~ 255 (328)
+++.++.+. ..| .||+
T Consensus 185 ~~~~~~~~~-~~G~~~~v 201 (202)
T 3d7l_A 185 AFEKSVFGA-QTGESYQV 201 (202)
T ss_dssp HHHHHHHSC-CCSCEEEE
T ss_pred HHHHhhhcc-ccCceEec
Confidence 999888543 445 6765
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=188.81 Aligned_cols=216 Identities=14% Similarity=0.036 Sum_probs=145.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.+... .++.++.+|++|++++.++++
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~d~~~~~~~~~~~~~~~ 72 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQ------------YPFATEVMDVADAAQVAQVCQRLLAET 72 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSSC------------CSSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhhc------------CCceEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999865210 127788999999998888775
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 73 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~----------- 141 (250)
T 2fwm_X 73 ERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRI----------- 141 (250)
T ss_dssp SCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCC-----------
Confidence 78999999997432 123345678999999999999988432 1457999999976544210
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHH-HHHhCCCCC--CC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVL-SLIKGAQTY--PN 225 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~--~~ 225 (328)
....|+.+|.+.+.+++.++.+. |+++++++||.++++....... ...... ........+ ..
T Consensus 142 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 209 (250)
T 2fwm_X 142 -----------GMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV-SDDAEEQRIRGFGEQFKLGI 209 (250)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------------------
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc-ChhHHHHHHhhhhhcccccC
Confidence 13559999999999999998764 8999999999999985332100 000001 111000000 01
Q ss_pred CCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
....+.+++|+|+++++++..+ ...| .+++.+
T Consensus 210 p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 244 (250)
T 2fwm_X 210 PLGKIARPQEIANTILFLASDLASHITLQDIVVDG 244 (250)
T ss_dssp ------CHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 1234789999999999998764 2356 445544
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=194.65 Aligned_cols=233 Identities=19% Similarity=0.159 Sum_probs=155.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC--hhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhC---
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|++|++|||||+|+||+++++.|+++|++|++++|+... ...+..+.... ....++.++.+|++|++++.++++
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 447899999999999999999999999999999986432 22222221111 113578999999999999888876
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++. +. +.+++|++||+++..+..
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV~isS~~~~~~~~------- 154 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISSSSSAGGTP------- 154 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCC-------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEecchhccCCC-------
Confidence 79999999996422 2334456788999999999999984 33 567899999987654211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCC---CcchHHHHHHHHhCC-
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKGA- 220 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~~- 220 (328)
+ ..+.|+.||.+.|.+++.++.+ +|+++++|+||.+.++..... ...............
T Consensus 155 ---------~-----~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (324)
T 3u9l_A 155 ---------P-----YLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPN 220 (324)
T ss_dssp ---------S-----SCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHHHHHHHTTT
T ss_pred ---------C-----cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHHHhhccccc
Confidence 0 1245999999999999999887 589999999999987632111 011111111111111
Q ss_pred CCCCC--------CCccceeHHHHHHHHHHhhcCCCCCC--cEEEecCccC
Q 020266 221 QTYPN--------VTFGWVNVKDVANAHIQAFEVPSANG--RYCLVERVSH 261 (328)
Q Consensus 221 ~~~~~--------~~~~~v~v~D~a~~~~~~~~~~~~~g--~~~~~~~~~~ 261 (328)
...++ ...+..+++|+|++++.++..+.... .+.+......
T Consensus 221 ~~~~~~~~~~~~~l~~~~~~p~~vA~aiv~~~~~~~~~~~~~~~~gp~~~~ 271 (324)
T 3u9l_A 221 AGLGEEIKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPFRVHVDPAEDG 271 (324)
T ss_dssp TTHHHHHHHHHHHTSCTTCCTHHHHHHHHHHHTSCTTCCCSEEEECTTCCS
T ss_pred cCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeCCcchH
Confidence 00000 01123689999999999998774322 4445434444
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-26 Score=193.38 Aligned_cols=210 Identities=17% Similarity=0.147 Sum_probs=151.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.++.+.+...+... ..++.++.+|++|++++.++++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA--GGTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999876665544443322 3578899999999998887765
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+.. +.++||++||.+++.+.+
T Consensus 80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~----------- 148 (264)
T 3tfo_A 80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVP----------- 148 (264)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCC-----------
Confidence 68999999997432 2234566789999999999988875531 457899999987655311
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc-CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
....|+.||.+.+.+++.++.+. |+++++|+||.|.++....... ...... .......+
T Consensus 149 -----------~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~---~~~~~~------~~~~~~~~ 208 (264)
T 3tfo_A 149 -----------TAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITH---EETMAA------MDTYRAIA 208 (264)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC--------------------------------C
T ss_pred -----------CChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccc---hhHHHH------HHhhhccC
Confidence 12459999999999999998885 8999999999998874322110 000000 00111125
Q ss_pred eeHHHHHHHHHHhhcCCCC
Q 020266 231 VNVKDVANAHIQAFEVPSA 249 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~~ 249 (328)
.+++|+|+++++++..+..
T Consensus 209 ~~pedvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 209 LQPADIARAVRQVIEAPQS 227 (264)
T ss_dssp CCHHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHhcCCcc
Confidence 7899999999999997654
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=193.32 Aligned_cols=223 Identities=12% Similarity=-0.011 Sum_probs=160.6
Q ss_pred cccCCCCeEEEECCccH--HHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-
Q 020266 4 VAAAAGKVVCVTGASGY--IASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
|..+++|+++||||+|+ ||+++++.|+++|++|++++|+....+.+..+.... .++.++.+|++|++++.++++
T Consensus 26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~ 102 (293)
T 3grk_A 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL---GAFVAGHCDVADAASIDAVFET 102 (293)
T ss_dssp -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH---TCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCceEEECCCCCHHHHHHHHHH
Confidence 34567899999999988 999999999999999999999854333333332222 368899999999998887775
Q ss_pred ------CccEEEEccCCCC---------CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCC
Q 020266 81 ------GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 ------~~d~vih~a~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
++|++|||||... ....+.+...+++|+.++.++++++.+.. ..++||++||.++..+.+
T Consensus 103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~---- 178 (293)
T 3grk_A 103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMP---- 178 (293)
T ss_dssp HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCT----
T ss_pred HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCC----
Confidence 6899999999753 22334566789999999999999988742 346899999976654211
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
....|+.||.+.+.+++.++.++ |+++++++||.+.++...... .............+
T Consensus 179 ------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~p 239 (293)
T 3grk_A 179 ------------------NYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIG-DFRYILKWNEYNAP 239 (293)
T ss_dssp ------------------TTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------C-CHHHHHHHHHHHST
T ss_pred ------------------chHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhccc-chHHHHHHHHhcCC
Confidence 13559999999999999998874 899999999999997543221 12222333333222
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++... ...| .+++.+
T Consensus 240 -----~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 273 (293)
T 3grk_A 240 -----LRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADS 273 (293)
T ss_dssp -----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -----CCCCCCHHHHHHHHHHHcCccccCCcceEEEECC
Confidence 234779999999999998753 2456 445544
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=192.85 Aligned_cols=223 Identities=18% Similarity=0.150 Sum_probs=164.0
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|++|..+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+ ..++.++.+|++|++++.++++
T Consensus 22 m~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~ 96 (281)
T 3ppi_A 22 MVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-----GNRAEFVSTNVTSEDSVLAAIE 96 (281)
T ss_dssp --CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHH
T ss_pred hhhhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHH
Confidence 45566677899999999999999999999999999999999876655443332 3578999999999998887775
Q ss_pred ------CccEEEEccCCCCC-----------CCCCcchhhhhHHHHHHHHHHHHHhcC---------CCccEEEEecchh
Q 020266 81 ------GCDGVCHTASPFYH-----------DAKDPQVELLDPAVKGTLNVLNSCAKF---------PSIKRVVLTSSMA 134 (328)
Q Consensus 81 ------~~d~vih~a~~~~~-----------~~~~~~~~~~~~N~~~~~~l~~~~~~~---------~~~~~~v~~SS~~ 134 (328)
++|++||||+.... ...+.+...+++|+.++.++++++... .+.++||++||.+
T Consensus 97 ~~~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~ 176 (281)
T 3ppi_A 97 AANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIA 176 (281)
T ss_dssp HHTTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGG
T ss_pred HHHHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccc
Confidence 57999999543211 112225688999999999999987632 1345899999987
Q ss_pred hhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHH
Q 020266 135 AVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAA 211 (328)
Q Consensus 135 ~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~ 211 (328)
++.+.+ ....|+.||.+.+.+++.++.++ |+++++++||.|.++..... ...
T Consensus 177 ~~~~~~----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~---~~~ 231 (281)
T 3ppi_A 177 GYEGQI----------------------GQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESV---GEE 231 (281)
T ss_dssp GTSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTT---CHH
T ss_pred ccCCCC----------------------CCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcc---cHH
Confidence 654211 13559999999999999988874 89999999999988642221 122
Q ss_pred HHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCC-cEEEec
Q 020266 212 AVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (328)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~ 257 (328)
.........+. ...+.+++|+|+++++++.+....| .+++.+
T Consensus 232 ~~~~~~~~~~~----~~~~~~pedvA~~v~~l~s~~~~tG~~i~vdG 274 (281)
T 3ppi_A 232 ALAKFAANIPF----PKRLGTPDEFADAAAFLLTNGYINGEVMRLDG 274 (281)
T ss_dssp HHHHHHHTCCS----SSSCBCHHHHHHHHHHHHHCSSCCSCEEEEST
T ss_pred HHHHHHhcCCC----CCCCCCHHHHHHHHHHHHcCCCcCCcEEEECC
Confidence 33334443321 1458899999999999998766677 445544
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-26 Score=197.10 Aligned_cols=225 Identities=17% Similarity=0.145 Sum_probs=159.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccC-CCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+.... ...++.++.+|++|++++.++++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 82 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999998765544333322211 11268999999999998887765
Q ss_pred ---CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCC
Q 020266 81 ---GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 ---~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. + ++||++||.++..+..
T Consensus 83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~----- 156 (280)
T 1xkq_A 83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQ----- 156 (280)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCC-----
T ss_pred hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCCC-----
Confidence 68999999996432 1223456788999999999999887641 3 7999999976543210
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC-cc-----hHHHHHHH
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-NT-----SAAAVLSL 216 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~-----~~~~~~~~ 216 (328)
+ ....|+.||.+.+.+++.++.+ +|+++++++||.+.+|...... .. ........
T Consensus 157 -----------~-----~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 220 (280)
T 1xkq_A 157 -----------P-----DFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASH 220 (280)
T ss_dssp -----------C-----SSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHC
T ss_pred -----------C-----cccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHH
Confidence 0 1245999999999999999865 5899999999999998422110 00 00111111
Q ss_pred HhCCCCCCCCCccceeHHHHHHHHHHhhcCC---CCCC-cEEEec
Q 020266 217 IKGAQTYPNVTFGWVNVKDVANAHIQAFEVP---SANG-RYCLVE 257 (328)
Q Consensus 217 ~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~---~~~g-~~~~~~ 257 (328)
... .....+.+++|+|+++++++..+ ...| .+++.+
T Consensus 221 ~~~-----~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdg 260 (280)
T 1xkq_A 221 KEC-----IPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADG 260 (280)
T ss_dssp TTT-----CTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEEST
T ss_pred HcC-----CCCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECC
Confidence 111 12235889999999999998753 3456 455544
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=192.26 Aligned_cols=214 Identities=16% Similarity=0.097 Sum_probs=157.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
..++|+||||||+|+||+++++.|+++|++|++++|+..... .....+.+|++|++++.++++
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV------------NVSDHFKIDVTNEEEVKEAVEKTTKK 78 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT------------TSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc------------CceeEEEecCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999865432 246788999999998888775
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 148 (269)
T 3vtz_A 79 YGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATK---------- 148 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCT----------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCC----------
Confidence 78999999997432 223345577889999999999987653 1457899999986654211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCC--------CCcchHHHHHHHHhCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQP--------TLNTSAAAVLSLIKGA 220 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~~~~ 220 (328)
....|+.||.+.+.+++.++.++ ++++++++||.|.++.... ...............
T Consensus 149 ------------~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 215 (269)
T 3vtz_A 149 ------------NAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQ- 215 (269)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHH-
T ss_pred ------------CChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhc-
Confidence 12559999999999999999886 8999999999998874210 000111222222222
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
.....+.+++|+|+++++++.... ..| .+++.++
T Consensus 216 ----~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 252 (269)
T 3vtz_A 216 ----HPMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGG 252 (269)
T ss_dssp ----STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCC
Confidence 123458899999999999987542 356 5566543
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=190.50 Aligned_cols=213 Identities=15% Similarity=0.145 Sum_probs=155.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+ ..++.++.+|++|++++.++++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999865444332221 2468899999999998888776
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||.... ...+.+...+++|+.++.++++++. +. +.++||++||.+++.+.+
T Consensus 77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~--------- 146 (254)
T 1hdc_A 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAAGLMGLA--------- 146 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCT---------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhhccCCC---------
Confidence 79999999997432 2233456789999999986666543 33 457999999976554211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC--CCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTYP 224 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~~ 224 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.+++|... ...... ....
T Consensus 147 -------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----------~~~~~~~~~~~~ 202 (254)
T 1hdc_A 147 -------------LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTA-----------ETGIRQGEGNYP 202 (254)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH-----------HHTCCCSTTSCT
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCcccc-----------ccchhHHHHHHh
Confidence 1255999999999999999876 3899999999999887311 000000 0111
Q ss_pred -CCCccce-eHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 225 -NVTFGWV-NVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 225 -~~~~~~v-~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
.....+. +++|+|+++++++..+ ...| .+++.+
T Consensus 203 ~~p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdg 240 (254)
T 1hdc_A 203 NTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDG 240 (254)
T ss_dssp TSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCCCCCCCCCHHHHHHHHHHHhCchhcCCCCCEEEECC
Confidence 1123477 9999999999998754 2356 455544
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-26 Score=193.85 Aligned_cols=215 Identities=18% Similarity=0.115 Sum_probs=154.8
Q ss_pred ccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 3 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
.|..+++|+++||||+|+||+++++.|+++|++|++++|+...... ...+.+|++|.+++.++++
T Consensus 22 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~-------------~~~~~~Dv~~~~~~~~~~~~~ 88 (266)
T 3uxy_A 22 SMQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA-------------DLHLPGDLREAAYADGLPGAV 88 (266)
T ss_dssp ----CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCC-------------SEECCCCTTSHHHHHHHHHHH
T ss_pred hhhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-------------hhccCcCCCCHHHHHHHHHHH
Confidence 4556678999999999999999999999999999999997655322 2345799999988776664
Q ss_pred -----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 -----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 -----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.+++.+.+
T Consensus 89 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~------- 161 (266)
T 3uxy_A 89 AAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGP------- 161 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCT-------
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCC-------
Confidence 78999999997432 233455678899999999999988432 1457999999976554211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC----CcchHHHHHHHHhCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT----LNTSAAAVLSLIKGA 220 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~~~~ 220 (328)
....|+.||.+.+.+++.++.++ |+++++++||.+.+|..... ..............
T Consensus 162 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~- 225 (266)
T 3uxy_A 162 ---------------GHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRT- 225 (266)
T ss_dssp ---------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTT-
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhc-
Confidence 23569999999999999998875 89999999999988732100 00011112222222
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.....+.+++|+|+++++++.... ..| .+++.+
T Consensus 226 ----~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 261 (266)
T 3uxy_A 226 ----VPLGRIAEPEDIADVVLFLASDAARYLCGSLVEVNG 261 (266)
T ss_dssp ----STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ----CCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECc
Confidence 223468899999999999997643 356 556554
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-26 Score=194.45 Aligned_cols=219 Identities=17% Similarity=0.154 Sum_probs=156.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh-hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+||+++||||+|+||++++++|+++|++|++++|+.... +.+...... ...++.++.+|++|++++.++++
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 83 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKD--VEERLQFVQADVTKKEDLHKIVEEAMSHF 83 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGG--GGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999998865442 222222222 13579999999999999888776
Q ss_pred -CccEEEEccCC--CC-----CCCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 -GCDGVCHTASP--FY-----HDAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 -~~d~vih~a~~--~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||. .. ....+.+...+++|+.++.++++++. +. +.+++|++||.+.....+.
T Consensus 84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~iss~~~~~~~~~------- 155 (264)
T 3i4f_A 84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYGFQGADSAPGW------- 155 (264)
T ss_dssp SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTTGGGCCCC-------
T ss_pred CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEeechhcccCCC-------
Confidence 78999999994 21 11233456789999999999999883 43 5578999999743321110
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
...+.|+.+|.+.+.+++.++.+ .|+++++++||.++++..... ........... .
T Consensus 156 -------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~-----~ 214 (264)
T 3i4f_A 156 -------------IYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEAT---IQEARQLKEHN-----T 214 (264)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCC---HHHHHHC----------
T ss_pred -------------CCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhc---cHHHHHHHhhc-----C
Confidence 01256999999999999999887 589999999999999864332 11111111111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....+.+++|+|+++++++.... ..| .+++.+
T Consensus 215 p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdG 249 (264)
T 3i4f_A 215 PIGRSGTGEDIARTISFLCEDDSDMITGTIIEVTG 249 (264)
T ss_dssp ---CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred CCCCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcC
Confidence 22347899999999999997543 356 566654
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=191.50 Aligned_cols=228 Identities=19% Similarity=0.188 Sum_probs=161.6
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-------------hhhhhhhhhc-cCCCCcEEEEEccCC
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-------------PKKTRHLLAL-DGASERLQLFKANLL 70 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~Dl~ 70 (328)
..+++|+++||||+|+||+++++.|+++|++|++++|+... .+.+...... .....++.++.+|++
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 34678999999999999999999999999999999987321 2222222211 122457999999999
Q ss_pred CcCchHHhhC-------CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC----CccEEEEecch
Q 020266 71 EEGSFDSIVD-------GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP----SIKRVVLTSSM 133 (328)
Q Consensus 71 ~~~~~~~~~~-------~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~v~~SS~ 133 (328)
|++++.++++ ++|++|||||.... ...+.+...+++|+.++.++++++.+.. ..++||++||.
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 166 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV 166 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence 9998888775 78999999997332 1234566789999999999999876541 24689999998
Q ss_pred hhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC----
Q 020266 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL---- 206 (328)
Q Consensus 134 ~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~---- 206 (328)
+++.+.+ ....|+.||.+.+.+++.++.+ +|+++++|+||.|.+|......
T Consensus 167 ~~~~~~~----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~ 224 (286)
T 3uve_A 167 GGLKAYP----------------------HTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKM 224 (286)
T ss_dssp GGTSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHH
T ss_pred hhccCCC----------------------CccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhh
Confidence 7654211 1245999999999999999887 5899999999999998643210
Q ss_pred ------cchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 207 ------NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 207 ------~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
.................| ..+.+++|+|+++++++... ...| .+++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~p---~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdG 281 (286)
T 3uve_A 225 FRPDLENPGPDDMAPICQMFHTLP---IPWVEPIDISNAVLFFASDEARYITGVTLPIDA 281 (286)
T ss_dssp HCTTSSSCCHHHHHHHHHTTCSSS---CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ccccccccchhhHHHHHHhhhccC---CCcCCHHHHHHHHHHHcCccccCCcCCEEeECC
Confidence 000011111111111112 56889999999999998753 2356 455544
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-26 Score=198.71 Aligned_cols=217 Identities=16% Similarity=0.100 Sum_probs=154.6
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|+||||||+|+||++++++|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.++++
T Consensus 27 ~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (301)
T 3tjr_A 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ--GFDAHGVVCDVRHLDEMVRLADEAFR 104 (301)
T ss_dssp CCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3466899999999999999999999999999999999876655544433222 3578999999999998888775
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+. ...++||++||.+++.+.+
T Consensus 105 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 176 (301)
T 3tjr_A 105 LLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNA-------- 176 (301)
T ss_dssp HHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCT--------
T ss_pred hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCC--------
Confidence 78999999997432 233445678999999999999987553 1246899999987655211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY 223 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~ 223 (328)
....|+.||.+.+.+++.++.+. |+++++++||.|.++...... ............+ .+
T Consensus 177 --------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~~~~~ 240 (301)
T 3tjr_A 177 --------------GLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSE--RIRGADYGMSATPEGAF 240 (301)
T ss_dssp --------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHHHH--HHC--------------
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccccccc--cccchhhccccChhhhc
Confidence 13569999999999999998764 899999999999876321000 0000000000000 01
Q ss_pred --CCCCccceeHHHHHHHHHHhhcCC
Q 020266 224 --PNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 224 --~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
......+++++|+|++++.++.++
T Consensus 241 ~~~~~~~~~~~pedvA~~i~~~l~~~ 266 (301)
T 3tjr_A 241 GPLPTQDESVSADDVARLTADAILAN 266 (301)
T ss_dssp --------CCCHHHHHHHHHHHHHHT
T ss_pred cccccccCCCCHHHHHHHHHHHHhcC
Confidence 123346899999999999999865
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-26 Score=195.69 Aligned_cols=222 Identities=15% Similarity=0.126 Sum_probs=162.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC---eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY---TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
.+++|+++||||+|+||+++++.|+++|+ +|++.+|+.+..+.+...+.......++.++.+|++|++++.++++
T Consensus 30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 109 (287)
T 3rku_A 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL 109 (287)
T ss_dssp HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 45689999999999999999999999987 9999999877666555444333234578999999999999888776
Q ss_pred -----CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCC
Q 020266 81 -----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 -----~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|+||||||... ....+.+...+++|+.|+.++++++.+. .+.++||++||.++..+.+
T Consensus 110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~------ 183 (287)
T 3rku_A 110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYP------ 183 (287)
T ss_dssp CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT------
T ss_pred HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCC------
Confidence 5899999999643 1123446688999999999999988532 1457999999987654211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.||.+.+.+++.++.+ +|+++++|+||.|.++....................
T Consensus 184 ----------------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--- 244 (287)
T 3rku_A 184 ----------------TGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDT--- 244 (287)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHHTTS---
T ss_pred ----------------CCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhhccc---
Confidence 1255999999999999999988 489999999999988731100000111122222221
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC--CC-cEEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPSA--NG-RYCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~~--~g-~~~~~~ 257 (328)
..++++|+|+++++++..+.. .| .+++.+
T Consensus 245 -----~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~ 276 (287)
T 3rku_A 245 -----TPLMADDVADLIVYATSRKQNTVIADTLIFPT 276 (287)
T ss_dssp -----CCEEHHHHHHHHHHHHTSCTTEEEEEEEEEET
T ss_pred -----CCCCHHHHHHHHHHHhCCCCCeEecceEEeeC
Confidence 245899999999999987543 23 455543
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-26 Score=198.03 Aligned_cols=242 Identities=14% Similarity=0.142 Sum_probs=165.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccC-CCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+.... ...++.++.+|++|++++.++++
T Consensus 23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 102 (297)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999998765544333322211 01268999999999998887775
Q ss_pred ---CccEEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ---GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+ ++||++||.++..+..
T Consensus 103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~~------- 174 (297)
T 1xhl_A 103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQAH------- 174 (297)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSCC-------
T ss_pred hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCCC-------
Confidence 78999999996432 123345678999999999999988764 13 7999999976543210
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC-cchHH-HHHHHHhC-CC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL-NTSAA-AVLSLIKG-AQ 221 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~~~~-~~~~~~~~-~~ 221 (328)
+ ....|+.+|.+.+.+++.++.+ +|+++++|+||.+.++...... ..... ........ ..
T Consensus 175 ---------~-----~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (297)
T 1xhl_A 175 ---------S-----GYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKE 240 (297)
T ss_dssp ---------T-----TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT
T ss_pred ---------C-----CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHh
Confidence 0 1245999999999999998865 5899999999999987422110 00000 00011111 11
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC---CCCC-cEEEec-CccCHHHHHHHHHH
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP---SANG-RYCLVE-RVSHYSEIVNIIRE 271 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~---~~~g-~~~~~~-~~~~~~el~~~i~~ 271 (328)
. .....+.+++|+|+++++++... ...| .+++.+ ....+.+.+..+.+
T Consensus 241 ~--~p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~ 293 (297)
T 1xhl_A 241 C--IPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMS 293 (297)
T ss_dssp T--CTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHH
T ss_pred c--CCCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhh
Confidence 1 11235889999999999998753 3456 555554 34444554443333
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=191.91 Aligned_cols=228 Identities=18% Similarity=0.178 Sum_probs=162.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Cc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 82 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+........+........+.++.+|+++++.+.++++ ++
T Consensus 7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 356899999999999999999999999999999999876655544443333334568889999999998888776 78
Q ss_pred cEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 83 d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
|++|||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.+++.+.+
T Consensus 87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------- 152 (267)
T 3t4x_A 87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQ-------------- 152 (267)
T ss_dssp SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCT--------------
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCC--------------
Confidence 999999997432 123345567999999988887766542 1567999999976554211
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCC-------CC-CcchHHHHHHHHhCC-CC
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQ-------PT-LNTSAAAVLSLIKGA-QT 222 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~-------~~-~~~~~~~~~~~~~~~-~~ 222 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++... +. ............... +
T Consensus 153 --------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (267)
T 3t4x_A 153 --------EMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRP- 223 (267)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHCT-
T ss_pred --------cchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccCC-
Confidence 23569999999999999999875 699999999999876211 00 000111222222211 1
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
......+.+++|+|+++++++... ...| .+++.+
T Consensus 224 -~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdG 260 (267)
T 3t4x_A 224 -TSIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDG 260 (267)
T ss_dssp -TCSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -cccccCccCHHHHHHHHHHHcCccccCccCCeEEECC
Confidence 112346899999999999998743 2356 556654
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-26 Score=198.87 Aligned_cols=226 Identities=13% Similarity=0.076 Sum_probs=160.1
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhcc---CCCCcEEEEEccCCCcCchHHhhC-
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD---GASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
..+++|+|+||||+|+||++++++|+++|++|++++|+.++...+...+... ....++.++.+|++|++++.++++
T Consensus 14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 93 (303)
T 1yxm_A 14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 93 (303)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence 3456899999999999999999999999999999999865544433322210 123578999999999998888775
Q ss_pred ------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCC
Q 020266 81 ------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.+ .++.+
T Consensus 94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~~------ 166 (303)
T 1yxm_A 94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFP------ 166 (303)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCCT------
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCCC------
Confidence 58999999996321 122334577899999999999997662 1246899999975 43211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcc-hHHHHHHHHhCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT-SAAAVLSLIKGAQT 222 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~ 222 (328)
....|+.+|.+.+.+.+.++.+. |++++++|||.++||........ ....+......
T Consensus 167 ----------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--- 227 (303)
T 1yxm_A 167 ----------------LAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQK--- 227 (303)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGG---
T ss_pred ----------------cchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhc---
Confidence 12459999999999999998875 89999999999999842111110 00111111111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
.....+++++|+|++++.++.... ..| .+++.++
T Consensus 228 --~p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG 264 (303)
T 1yxm_A 228 --IPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG 264 (303)
T ss_dssp --STTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CcccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCC
Confidence 112348899999999999987532 356 5566553
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-25 Score=187.66 Aligned_cols=223 Identities=11% Similarity=0.061 Sum_probs=164.7
Q ss_pred cCCCCeEEEECCccH--HHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGASGY--IASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|+++||||+|+ ||+++++.|+++|++|++++|+....+.+..+..... ..++.++.+|++|++++.++++
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD-RNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS-SCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC-CCCceEEeCCCCCHHHHHHHHHHHH
Confidence 356899999999988 9999999999999999999998654444444433322 2378999999999998887775
Q ss_pred ----CccEEEEccCCCC---------CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCC
Q 020266 81 ----GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ----~~d~vih~a~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
.+|+|||+||... ....+.+...+++|+.++.++++++.+.. +.++||++||.++..+.+
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------ 156 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMP------ 156 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCT------
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccCC------
Confidence 6899999999743 12233455778999999999999998762 235899999987655211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++...... .............+
T Consensus 157 ----------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~~-- 217 (266)
T 3oig_A 157 ----------------NYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGIS-DFNSILKDIEERAP-- 217 (266)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT-THHHHHHHHHHHST--
T ss_pred ----------------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccc-chHHHHHHHHhcCC--
Confidence 13559999999999999998864 799999999999987543321 12233333333222
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++.... ..| .+++.+
T Consensus 218 ---~~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdG 251 (266)
T 3oig_A 218 ---LRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDS 251 (266)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---CCCCCCHHHHHHHHHHHcCCchhcCcCCEEEECC
Confidence 2347899999999999998532 456 555544
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=194.08 Aligned_cols=229 Identities=17% Similarity=0.167 Sum_probs=160.6
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC---------hhhhhhhhhcc-CCCCcEEEEEccCCCcC
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND---------PKKTRHLLALD-GASERLQLFKANLLEEG 73 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~ 73 (328)
|..+++|++|||||+|+||+++++.|+++|++|++++|+... .+.+....... ....++.++.+|++|++
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLA 120 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 445678999999999999999999999999999999886322 22222221111 12357899999999999
Q ss_pred chHHhhC-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhc
Q 020266 74 SFDSIVD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVL 137 (328)
Q Consensus 74 ~~~~~~~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~ 137 (328)
++.++++ ++|+||||||.... ...+.+...+++|+.++.++++++.+. ...++||++||.+++.
T Consensus 121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~ 200 (317)
T 3oec_A 121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR 200 (317)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence 8888775 68999999997432 223456678999999999999988553 1246899999987655
Q ss_pred cCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC---------
Q 020266 138 NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT--------- 205 (328)
Q Consensus 138 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~--------- 205 (328)
+.+ ....|+.||.+.+.+++.++.+. |+++++|+||.|.++.....
T Consensus 201 ~~~----------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~ 258 (317)
T 3oec_A 201 GAP----------------------GQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPH 258 (317)
T ss_dssp CCT----------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTT
T ss_pred CCC----------------------CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhh
Confidence 311 12559999999999999998874 89999999999998742110
Q ss_pred -CcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 206 -LNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
................ .....+++++|+|+++++++.... ..| .+++.+
T Consensus 259 ~~~~~~~~~~~~~~~~~---~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdG 311 (317)
T 3oec_A 259 LENPTREDAAELFSQLT---LLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDG 311 (317)
T ss_dssp CSSCCHHHHHHHHTTTC---SSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ccccchhHHHHHHhhhc---cCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECc
Confidence 0000111111111111 112568999999999999986532 356 555554
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=191.03 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=157.4
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh---CCc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---DGC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~~~ 82 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++...+. . ..++.++.+|++|++++.++. .++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~------~~~~~~~~~D~~~~~~~~~~~~~~~~i 75 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-K------YPGIQTRVLDVTKKKQIDQFANEVERL 75 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-G------STTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-h------ccCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 356899999999999999999999999999999999765443322 1 126889999999999887664 478
Q ss_pred cEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 83 d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
|+||||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.++..+.+
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------- 141 (246)
T 2ag5_A 76 DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGV-------------- 141 (246)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCC--------------
T ss_pred CEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCC--------------
Confidence 999999997432 123345578899999999999987642 1457999999976544210
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCCCCCCCCCc
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
. ....|+.||.+.+.+++.++.+. |++++++|||.+++|...... ..............+ ..
T Consensus 142 -~------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 209 (246)
T 2ag5_A 142 -V------NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQK-----TG 209 (246)
T ss_dssp -T------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCT-----TS
T ss_pred -C------CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCC-----CC
Confidence 0 12459999999999999998764 899999999999997421100 001112222332221 23
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.+.+++|+|+++++++.... ..| .+++.+
T Consensus 210 ~~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdg 241 (246)
T 2ag5_A 210 RFATAEEIAMLCVYLASDESAYVTGNPVIIDG 241 (246)
T ss_dssp SCEEHHHHHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred CCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 48899999999999987532 356 445544
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=191.70 Aligned_cols=216 Identities=18% Similarity=0.141 Sum_probs=158.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+...+ ..++.++.+|++|++++.++++
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEE 77 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999865544332221 1468899999999998887765
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. ..++||++||.+++ +.+
T Consensus 78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~------------ 144 (263)
T 2a4k_A 78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAF------------ 144 (263)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHH------------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCC------------
Confidence 57999999996432 1223355788999999999999987752 13689999997644 210
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++..... ............+ ...
T Consensus 145 ----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~p-----~~~ 206 (263)
T 2a4k_A 145 ----------GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL---PPWAWEQEVGASP-----LGR 206 (263)
T ss_dssp ----------HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS---CHHHHHHHHHTST-----TCS
T ss_pred ----------CcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc---CHHHHHHHHhcCC-----CCC
Confidence 12459999999999999988763 89999999999999854321 1122223333222 234
Q ss_pred ceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 230 WVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
+.+++|+|+++++++.... ..| .+++.+
T Consensus 207 ~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdg 237 (263)
T 2a4k_A 207 AGRPEEVAQAALFLLSEESAYITGQALYVDG 237 (263)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CcCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence 7899999999999987542 356 445544
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=191.75 Aligned_cols=205 Identities=17% Similarity=0.147 Sum_probs=150.6
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|..+++|+||||||+|+||+++++.|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.++++
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA--GGEAESHACDLSHSDAIAAFATGVL 101 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999876655544443322 3578999999999998887765
Q ss_pred ----CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ----GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ----~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
.+|+||||||... ....+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 102 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 174 (262)
T 3rkr_A 102 AAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVA------- 174 (262)
T ss_dssp HHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCT-------
T ss_pred HhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCC-------
Confidence 5899999999621 1223345678999999999999987542 1557999999976544211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ..
T Consensus 175 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-----------~~----- 223 (262)
T 3rkr_A 175 ---------------DGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLS-----------AK----- 223 (262)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------
T ss_pred ---------------CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccccc-----------cc-----
Confidence 1355999999999999999876 5899999999999876422110 00
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
.....+++++|+|+++++++....
T Consensus 224 ~~~~~~~~p~dvA~~v~~l~s~~~ 247 (262)
T 3rkr_A 224 KSALGAIEPDDIADVVALLATQAD 247 (262)
T ss_dssp -----CCCHHHHHHHHHHHHTCCT
T ss_pred cccccCCCHHHHHHHHHHHhcCcc
Confidence 112347799999999999998653
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-26 Score=195.99 Aligned_cols=224 Identities=16% Similarity=0.100 Sum_probs=162.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+....+...+... ..++.++.+|++|++++.++++
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS--GGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT--TCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999887766655444332 3578999999999998888776
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|++|||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.++..+..
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~----------- 176 (275)
T 4imr_A 108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPKS----------- 176 (275)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCC-----------
Confidence 68999999996322 233445678999999999999987542 1457899999976544110
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.||.+.+.+++.++.++ |+++++++||.+.++..................... ...
T Consensus 177 -----------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~----p~~ 241 (275)
T 4imr_A 177 -----------VVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLN----WMG 241 (275)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHS----TTC
T ss_pred -----------CchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhcC----ccC
Confidence 12459999999999999998875 899999999999886321100000111222222110 122
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.+..++|+|+++++++.... ..| .+++.+
T Consensus 242 r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG 273 (275)
T 4imr_A 242 RAGRPEEMVGAALFLASEACSFMTGETIFLTG 273 (275)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred CCcCHHHHHHHHHHHcCcccCCCCCCEEEeCC
Confidence 36789999999999987532 356 445443
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=189.49 Aligned_cols=223 Identities=14% Similarity=0.110 Sum_probs=158.7
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhh-hccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL-ALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
..+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+ ... ..++.++.+|++|++++.++++
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~ 94 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY--GVETMAFRCDVSNYEEVKKLLEAVK 94 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 3556899999999999999999999999999999999865544433222 111 2468889999999998887775
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchh-hhccCCCCCCCCc
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMA-AVLNTGKPRTPDV 147 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~-~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.+ ...+.+
T Consensus 95 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------- 167 (267)
T 1vl8_A 95 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMP------- 167 (267)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSS-------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCCC-------
Confidence 68999999997432 122345578899999999998887532 2567999999975 322100
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.+.++....... ............+
T Consensus 168 ---------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~p--- 228 (267)
T 1vl8_A 168 ---------------NISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS-DPEKLDYMLKRIP--- 228 (267)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT-CHHHHHHHHHTCT---
T ss_pred ---------------CChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccccccc-ChHHHHHHHhhCC---
Confidence 1245999999999999999876 48999999999998874221000 0122222333222
Q ss_pred CCCccceeHHHHHHHHHHhhcCC--CCCCc-EEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVP--SANGR-YCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~--~~~g~-~~~~~ 257 (328)
...+++++|+|+++++++... ...|. +.+.+
T Consensus 229 --~~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 262 (267)
T 1vl8_A 229 --LGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDG 262 (267)
T ss_dssp --TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCcCHHHHHHHHHHHcCccccCCcCCeEEECC
Confidence 234789999999999998753 23564 44443
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=189.83 Aligned_cols=223 Identities=14% Similarity=0.100 Sum_probs=157.5
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
+.++++|+++||||+|+||++++++|+++|++|++++|+..+ ......... ....++.++.+|++|++++.++++
T Consensus 20 ~~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 97 (269)
T 3gk3_A 20 GSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHER--DAGRDFKAYAVDVADFESCERCAEKV 97 (269)
T ss_dssp ----CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHH--TTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred hhhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHH--hcCCceEEEEecCCCHHHHHHHHHHH
Confidence 344568899999999999999999999999999999854432 222222221 123578999999999998887775
Q ss_pred -----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 -----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 -----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 98 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 170 (269)
T 3gk3_A 98 LADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAF------- 170 (269)
T ss_dssp HHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-------
T ss_pred HHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCC-------
Confidence 78999999997432 223345678999999999999987642 1457899999987665321
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+++.++.++ |+++++++||.+.++...... ...........
T Consensus 171 ---------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-------~~~~~~~~~~~ 228 (269)
T 3gk3_A 171 ---------------GQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVP-------QDVLEAKILPQ 228 (269)
T ss_dssp ---------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC--------------CCSGGG
T ss_pred ---------------CcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhc-------hhHHHHHhhhc
Confidence 12559999999999999988874 899999999999987643211 01111010001
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.....+.+++|+|+++++++.... ..| .+++.+
T Consensus 229 ~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdg 264 (269)
T 3gk3_A 229 IPVGRLGRPDEVAALIAFLCSDDAGFVTGADLAING 264 (269)
T ss_dssp CTTSSCBCHHHHHHHHHHHTSTTCTTCCSCEEEEST
T ss_pred CCcCCccCHHHHHHHHHHHhCCCcCCeeCcEEEECC
Confidence 223457899999999999987643 356 566654
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=186.43 Aligned_cols=202 Identities=17% Similarity=0.095 Sum_probs=153.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Ccc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCD 83 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d 83 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.. +|++|+++++++++ ++|
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----------------------~D~~~~~~v~~~~~~~g~id 61 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG----------------------LDISDEKSVYHYFETIGAFD 61 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT----------------------CCTTCHHHHHHHHHHHCSEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc----------------------cCCCCHHHHHHHHHHhCCCC
Confidence 45789999999999999999999999999999998743 79999998888776 689
Q ss_pred EEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020266 84 GVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (328)
Q Consensus 84 ~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 156 (328)
++|||||... ....+.+...+++|+.++.++++++.+.. +.+++|++||.++..+.+
T Consensus 62 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------------- 125 (223)
T 3uce_A 62 HLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVA---------------- 125 (223)
T ss_dssp EEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCT----------------
T ss_pred EEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCC----------------
Confidence 9999999642 12233455778999999999999998762 234899999976554211
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHhcC-ccEEEEcCCcccCCCCCCCCcch-HHHHHHHHhCCCCCCCCCccceeHH
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKS-IDLVTINPAMVIGPLLQPTLNTS-AAAVLSLIKGAQTYPNVTFGWVNVK 234 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~-~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~v~ 234 (328)
....|+.+|.+.+.+++.++.+++ +++++++||.+.+|......... ........... ....+.+++
T Consensus 126 ------~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 194 (223)
T 3uce_A 126 ------NTYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHL-----PVGKVGEAS 194 (223)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHS-----TTCSCBCHH
T ss_pred ------CchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcC-----CCCCccCHH
Confidence 135599999999999999999865 99999999999998543322111 11222233322 234578999
Q ss_pred HHHHHHHHhhcCCCCCC-cEEEec
Q 020266 235 DVANAHIQAFEVPSANG-RYCLVE 257 (328)
Q Consensus 235 D~a~~~~~~~~~~~~~g-~~~~~~ 257 (328)
|+|+++++++......| .+++.+
T Consensus 195 dvA~~~~~l~~~~~~tG~~i~vdg 218 (223)
T 3uce_A 195 DIAMAYLFAIQNSYMTGTVIDVDG 218 (223)
T ss_dssp HHHHHHHHHHHCTTCCSCEEEEST
T ss_pred HHHHHHHHHccCCCCCCcEEEecC
Confidence 99999999998766677 555554
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=191.84 Aligned_cols=223 Identities=17% Similarity=0.108 Sum_probs=157.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHH-CCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLS-RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|+|+||||+|+||++++++|++ .|++|++++|+.++.......+... ..++.++.+|++|++++.++++
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999999 9999999999865544433332221 2468899999999998888776
Q ss_pred --CccEEEEccCCCCCCC-----CCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCC------CC
Q 020266 81 --GCDGVCHTASPFYHDA-----KDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRT------PD 146 (328)
Q Consensus 81 --~~d~vih~a~~~~~~~-----~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~------~~ 146 (328)
++|+||||||...... .+.+...+++|+.++.++++++.+.. ..++||++||.+++++.+.... ..
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~ 159 (276)
T 1wma_A 80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRS 159 (276)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHC
T ss_pred cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhccc
Confidence 7999999999743221 13345779999999999999998862 2358999999877653110000 00
Q ss_pred ccccCCCCC-------------CccccccCCchhhhhhHHHHHHHHHHHHh-------cCccEEEEcCCcccCCCCCCCC
Q 020266 147 VVVDETWFS-------------DPEVCKQSELWYPLSKTLAEDAAWKFAKE-------KSIDLVTINPAMVIGPLLQPTL 206 (328)
Q Consensus 147 ~~~~E~~~~-------------~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-------~~~~~~ilRp~~v~G~~~~~~~ 206 (328)
..++|+++. ....+..+.+.|+.||.+.+.+++.++.+ .++++++++||.|.++....
T Consensus 160 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~-- 237 (276)
T 1wma_A 160 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP-- 237 (276)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT--
T ss_pred cccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc--
Confidence 011111100 00000012256999999999999998876 48999999999998875321
Q ss_pred cchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC----CCCcEE
Q 020266 207 NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS----ANGRYC 254 (328)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~----~~g~~~ 254 (328)
..+.+++|+|++++.++..+. ..|.|.
T Consensus 238 ---------------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~ 268 (276)
T 1wma_A 238 ---------------------KATKSPEEGAETPVYLALLPPDAEGPHGQFV 268 (276)
T ss_dssp ---------------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEE
T ss_pred ---------------------cccCChhHhhhhHhhhhcCcccccccCceEe
Confidence 136899999999999997542 356553
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.2e-25 Score=188.61 Aligned_cols=221 Identities=14% Similarity=0.081 Sum_probs=159.9
Q ss_pred cCCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|+++||||+ |+||+++++.|+++|++|++++|+.+....+..+.... .++.++.+|++|++++.++++
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~ 79 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL---NSPYVYELDVSKEEHFKSLYNSVK 79 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEcCCCCHHHHHHHHHHHH
Confidence 4568999999999 99999999999999999999999875222232222211 237889999999998887775
Q ss_pred ----CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCC
Q 020266 81 ----GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ----~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. ..++||++||.++..+.+
T Consensus 80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------ 153 (275)
T 2pd4_A 80 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMA------ 153 (275)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT------
T ss_pred HHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCCC------
Confidence 68999999997432 2233456789999999999999998762 135899999976544211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++..... ..............+
T Consensus 154 ----------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~p-- 214 (275)
T 2pd4_A 154 ----------------HYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGI-ADFRMILKWNEINAP-- 214 (275)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGS-TTHHHHHHHHHHHST--
T ss_pred ----------------CchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhc-cccHHHHHHHHhcCC--
Confidence 12459999999999999998875 89999999999999853221 111222233322222
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC--CCCCc-EEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP--SANGR-YCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~-~~~~~ 257 (328)
...+.+++|+|+++++++... ...|. +++.+
T Consensus 215 ---~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdg 248 (275)
T 2pd4_A 215 ---LRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDA 248 (275)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---cCCCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 123679999999999998753 23564 45544
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=187.40 Aligned_cols=210 Identities=19% Similarity=0.223 Sum_probs=154.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.++++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA--GAKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999865554433333221 3478899999999998887765
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+.. + ++||++||.++..+.+
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~---------- 150 (247)
T 2jah_A 82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNVR---------- 150 (247)
T ss_dssp HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCCT----------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCCC----------
Confidence 78999999996422 1223455788999999999999886531 3 7999999976554211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+.+.+.+.++.+ +|+++++++||.+.++....... .. ........ + ..
T Consensus 151 ------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--~~-~~~~~~~~---~-~~ 211 (247)
T 2jah_A 151 ------------NAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITH--TA-TKEMYEQR---I-SQ 211 (247)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCC--HH-HHHHHHHH---T-TT
T ss_pred ------------CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccc--hh-hHHHHHhc---c-cc
Confidence 1245999999999999998876 48999999999998874322111 11 11111111 1 11
Q ss_pred ccceeHHHHHHHHHHhhcCC
Q 020266 228 FGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~ 247 (328)
..+++++|+|+++++++..+
T Consensus 212 ~~~~~pedvA~~v~~l~s~~ 231 (247)
T 2jah_A 212 IRKLQAQDIAEAVRYAVTAP 231 (247)
T ss_dssp SCCBCHHHHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHhCCC
Confidence 22589999999999999864
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=189.31 Aligned_cols=220 Identities=20% Similarity=0.129 Sum_probs=154.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecC-CCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|+++||||+|+||+++++.|+++|++|++..+. .+..+.+....... ..++.++.+|++|++++.++++
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 102 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA--GGKALTAQADVSDPAAVRRLFATAEEA 102 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999998654 33344433333222 3578899999999998888775
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|++|||||.... ...+.+...+++|+.|+.++++++.+.. ..+++|++||.++..+.+
T Consensus 103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 170 (267)
T 3u5t_A 103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLHP------------ 170 (267)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCCT------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCCC------------
Confidence 78999999997432 2233456788899999999999887642 235899999976655311
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.||.+.+.+++.++.+. |++++++.||.+.++...... ............ ....
T Consensus 171 ----------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~-----p~~r 233 (267)
T 3u5t_A 171 ----------SYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGK--SDEVRDRFAKLA-----PLER 233 (267)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-------------CHHHHHTSS-----TTCS
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccC--CHHHHHHHHhcC-----CCCC
Confidence 12459999999999999999885 899999999999887532111 011112222221 2345
Q ss_pred ceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 230 WVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
+.+++|+|+++++++.... ..| .+++.+
T Consensus 234 ~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 264 (267)
T 3u5t_A 234 LGTPQDIAGAVAFLAGPDGAWVNGQVLRANG 264 (267)
T ss_dssp CBCHHHHHHHHHHHHSTTTTTCCSEEEEESS
T ss_pred CcCHHHHHHHHHHHhCccccCccCCEEEeCC
Confidence 7899999999999987543 366 444444
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=187.47 Aligned_cols=198 Identities=19% Similarity=0.116 Sum_probs=148.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
|++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.... ..++.++.+|++|++++.++++
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 75 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----GNAVIGIVADLAHHEDVDVAFAAAVEWG 75 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999999999999876655443333 1268999999999998887775
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+.. ...++|++||.++..+.+
T Consensus 76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~------------ 143 (235)
T 3l6e_A 76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGKA------------ 143 (235)
T ss_dssp CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSCS------------
T ss_pred CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCCC------------
Confidence 68999999997332 2334566789999999999999885531 123899999976555211
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++...... . .....
T Consensus 144 ----------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--------~---------~~~~~ 196 (235)
T 3l6e_A 144 ----------NESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTD--------H---------VDPSG 196 (235)
T ss_dssp ----------SHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC----------------------------
T ss_pred ----------CCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhccC--------C---------CCCcC
Confidence 12459999999999999998864 799999999999876432110 0 01124
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 020266 230 WVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~ 248 (328)
+++++|+|++++.++.++.
T Consensus 197 ~~~pedvA~~v~~l~~~~~ 215 (235)
T 3l6e_A 197 FMTPEDAAAYMLDALEARS 215 (235)
T ss_dssp CBCHHHHHHHHHHHTCCCS
T ss_pred CCCHHHHHHHHHHHHhCCC
Confidence 7899999999999998653
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=187.68 Aligned_cols=222 Identities=12% Similarity=0.020 Sum_probs=162.3
Q ss_pred cccCCCCeEEEECCccH--HHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-
Q 020266 4 VAAAAGKVVCVTGASGY--IASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
|..+++|+|+||||+|+ ||+++++.|+++|++|++++|+. ..+.+..+.... .++.++.+|++|++++.++++
T Consensus 21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~ 96 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-FKDRVEKLCAEF---NPAAVLPCDVISDQEIKDLFVE 96 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHGGG---CCSEEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-HHHHHHHHHHhc---CCceEEEeecCCHHHHHHHHHH
Confidence 44566899999999977 99999999999999999999987 323333332222 358899999999998887775
Q ss_pred ------CccEEEEccCCCCC----------CCCCcchhhhhHHHHHHHHHHHHHhcC--CCccEEEEecchhhhccCCCC
Q 020266 81 ------GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKF--PSIKRVVLTSSMAAVLNTGKP 142 (328)
Q Consensus 81 ------~~d~vih~a~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~ 142 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. ...++||++||.++..+.+
T Consensus 97 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 174 (280)
T 3nrc_A 97 LGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMP-- 174 (280)
T ss_dssp HHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCT--
T ss_pred HHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCC--
Confidence 57999999997542 333445578999999999999988764 1346899999986654211
Q ss_pred CCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhC
Q 020266 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG 219 (328)
Q Consensus 143 ~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~ 219 (328)
..+.|+.||.+.+.+++.++.+ .|+++++++||.|.++...... ............
T Consensus 175 --------------------~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~~~~~~~~ 233 (280)
T 3nrc_A 175 --------------------SYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGIS-NFKKMLDYNAMV 233 (280)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCT-THHHHHHHHHHH
T ss_pred --------------------CchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCc-chHHHHHHHHhc
Confidence 2356999999999999998876 4899999999999987543221 122333333332
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.+ ...+.+++|+|+++++++.... ..| .+++.+
T Consensus 234 ~p-----~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdg 269 (280)
T 3nrc_A 234 SP-----LKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDA 269 (280)
T ss_dssp ST-----TCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEEST
T ss_pred CC-----CCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECC
Confidence 21 2347899999999999987532 456 556654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=196.27 Aligned_cols=222 Identities=14% Similarity=0.067 Sum_probs=159.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC--hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|++|||||+|+||+++++.|+++|++|++.+|+... .+.+....... ..++.++.+|++|++++.++++
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999886432 22232322222 3578999999999998877765
Q ss_pred ----CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ----~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+.. +.++||++||.+++.+.+
T Consensus 124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~--------- 194 (294)
T 3r3s_A 124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSP--------- 194 (294)
T ss_dssp HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCT---------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCC---------
Confidence 68999999996321 1234456889999999999999998762 235899999986654211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.||.+.+.+++.++.++ |+++++++||.|.++....... .......... ...
T Consensus 195 -------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~-~~~~~~~~~~-----~~p 255 (294)
T 3r3s_A 195 -------------HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ-TQDKIPQFGQ-----QTP 255 (294)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTS-CGGGSTTTTT-----TST
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCC-CHHHHHHHHh-----cCC
Confidence 12559999999999999998875 8999999999999874111000 0000000000 122
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++.... ..| .+++.+
T Consensus 256 ~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG 289 (294)
T 3r3s_A 256 MKRAGQPAELAPVYVYLASQESSYVTAEVHGVCG 289 (294)
T ss_dssp TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 3457899999999999987532 356 556654
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=191.26 Aligned_cols=220 Identities=16% Similarity=0.119 Sum_probs=157.4
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+|+||||+|+||++++++|+++|++|++++|+.+....+....... ..++.++.+|++|++++.++++
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 108 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY--GVHSKAYKCNISDPKSVEETISQQEKD 108 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH--CSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999887665544433222 2468899999999998887775
Q ss_pred --CccEEEEccCCCCC-C------CCCcchhhhhHHHHHH----HHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 --GCDGVCHTASPFYH-D------AKDPQVELLDPAVKGT----LNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 --~~d~vih~a~~~~~-~------~~~~~~~~~~~N~~~~----~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
.+|+|||+||.... . ..+.+...+++|+.++ +++++.+++. +.++||++||.++..+..
T Consensus 109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~~------- 180 (279)
T 3ctm_A 109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN-GKGSLIITSSISGKIVNI------- 180 (279)
T ss_dssp HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCCTTSCC---------
T ss_pred hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEECchHhccCCC-------
Confidence 48999999986432 1 1223446788999995 5556666655 567999999976443200
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
.. +...|+.+|.+.|.+++.++.++ + ++++++||.+.++..... ............+
T Consensus 181 -------~~------~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~p--- 240 (279)
T 3ctm_A 181 -------PQ------LQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFA---SKDMKAKWWQLTP--- 240 (279)
T ss_dssp --------C------CHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSC---CHHHHHHHHHHST---
T ss_pred -------CC------CcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCcccccccc---ChHHHHHHHHhCC---
Confidence 00 12459999999999999998874 6 999999999998854321 1122222222111
Q ss_pred CCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
...+++++|+|++++.++... ...| .+++.+
T Consensus 241 --~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdg 274 (279)
T 3ctm_A 241 --LGREGLTQELVGGYLYLASNASTFTTGSDVVIDG 274 (279)
T ss_dssp --TCSCBCGGGTHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --ccCCcCHHHHHHHHHHHhCccccCccCCEEEECC
Confidence 234889999999999998753 2356 556654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=190.49 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=165.5
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|+.|..+++|+++||||++.||+++++.|+++|++|++.+|+.+..+.....+... ..++..+++|++|+++++++++
T Consensus 1 Ms~~f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~--g~~~~~~~~Dv~~~~~v~~~~~ 78 (255)
T 4g81_D 1 MTALFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK--GYDAHGVAFDVTDELAIEAAFS 78 (255)
T ss_dssp --CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHH
T ss_pred CCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHH
Confidence 77777789999999999999999999999999999999999876655544443332 3578899999999998887765
Q ss_pred -------CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCC
Q 020266 81 -------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 -------~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
++|++|||||... +...+.|+..+++|+.|+.++.+++.+. .+.+++|++||.++..+.+
T Consensus 79 ~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~---- 154 (255)
T 4g81_D 79 KLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARP---- 154 (255)
T ss_dssp HHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCT----
T ss_pred HHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCC----
Confidence 6899999998632 2345567789999999999998877543 1446899999987655321
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
....|+.||.+...+.+.++.++ |+++.+|-||.+..|....... .......+....|
T Consensus 155 ------------------~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~-~~~~~~~~~~~~P 215 (255)
T 4g81_D 155 ------------------TVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIE-DKQFDSWVKSSTP 215 (255)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHT-CHHHHHHHHHHST
T ss_pred ------------------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccC-CHHHHHHHHhCCC
Confidence 12459999999999999998874 8999999999998874211000 0111222222212
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
...+..++|+|.++++++.... ..|.-..++
T Consensus 216 -----l~R~g~pediA~~v~fL~S~~a~~iTG~~i~VD 248 (255)
T 4g81_D 216 -----SQRWGRPEELIGTAIFLSSKASDYINGQIIYVD 248 (255)
T ss_dssp -----TCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEES
T ss_pred -----CCCCcCHHHHHHHHHHHhCchhCCCcCCEEEEC
Confidence 1236789999999999986432 366444343
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=180.52 Aligned_cols=216 Identities=16% Similarity=0.128 Sum_probs=162.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Cc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 82 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|+.+.... ....++..+.+|++|+++++++++ ++
T Consensus 8 lf~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~--------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 79 (242)
T 4b79_A 8 IYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA--------PRHPRIRREELDITDSQRLQRLFEALPRL 79 (242)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS--------CCCTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh--------hhcCCeEEEEecCCCHHHHHHHHHhcCCC
Confidence 4589999999999999999999999999999999998766443 123578999999999999888776 68
Q ss_pred cEEEEccCCCCC---CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020266 83 DGVCHTASPFYH---DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (328)
Q Consensus 83 d~vih~a~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 157 (328)
|++|||||.... ...+.|+..+++|+.|+..+.+++.+.. +.+++|++||+++..+.+
T Consensus 80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~----------------- 142 (242)
T 4b79_A 80 DVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSA----------------- 142 (242)
T ss_dssp SEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCCS-----------------
T ss_pred CEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCCC-----------------
Confidence 999999997432 2345677899999999999998876642 236899999987655321
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHH
Q 020266 158 EVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVK 234 (328)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 234 (328)
....|+.||.....+.+.++.++ |++++.|-||.+..|...... .......++....| ...+..++
T Consensus 143 -----~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~-~~~~~~~~~~~~~P-----lgR~g~pe 211 (242)
T 4b79_A 143 -----DRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLK-ADVEATRRIMQRTP-----LARWGEAP 211 (242)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----C-CCHHHHHHHHHTCT-----TCSCBCHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhccc-CCHHHHHHHHhcCC-----CCCCcCHH
Confidence 12459999999999999998874 899999999999888533211 12234444444332 23477899
Q ss_pred HHHHHHHHhhcCCC--CCCcEEEec
Q 020266 235 DVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 235 D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
|+|.++++++.... ..|....++
T Consensus 212 eiA~~v~fLaSd~a~~iTG~~l~VD 236 (242)
T 4b79_A 212 EVASAAAFLCGPGASFVTGAVLAVD 236 (242)
T ss_dssp HHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred HHHHHHHHHhCchhcCccCceEEEC
Confidence 99999999986532 366444443
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=192.69 Aligned_cols=227 Identities=13% Similarity=0.074 Sum_probs=157.0
Q ss_pred ccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhC-
Q 020266 3 SVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 3 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
++..+++|+++||||+|+||+++++.|+++|++|++++|.....+.+....... ....++.++.+|++|++++.++++
T Consensus 5 ~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 84 (262)
T 3ksu_A 5 KYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDF 84 (262)
T ss_dssp CCSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHH
T ss_pred cccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 345567899999999999999999999999999999988655444433332211 124578999999999998888776
Q ss_pred ------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|++|||||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||.+...+.+
T Consensus 85 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~-------- 156 (262)
T 3ksu_A 85 AEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTG-------- 156 (262)
T ss_dssp HHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHC--------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCC--------
Confidence 68999999996432 2234456788999999999999998862 346899999977665321
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.||.+.+.+++.++.+. |++++++.||.|.++....... ......... ..
T Consensus 157 --------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~-----~~ 215 (262)
T 3ksu_A 157 --------------FYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQET--KESTAFHKS-----QA 215 (262)
T ss_dssp --------------CCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC-------------------
T ss_pred --------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCc--hHHHHHHHh-----cC
Confidence 12449999999999999999885 8999999999987763211100 000000111 11
Q ss_pred CCccceeHHHHHHHHHHhhcCC-CCCC-cEEEecC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP-SANG-RYCLVER 258 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~-~~~g-~~~~~~~ 258 (328)
....+.+++|+|+++++++... ...| .+++.|+
T Consensus 216 ~~~r~~~pedvA~~v~~L~s~~~~itG~~i~vdGg 250 (262)
T 3ksu_A 216 MGNQLTKIEDIAPIIKFLTTDGWWINGQTIFANGG 250 (262)
T ss_dssp CCCCSCCGGGTHHHHHHHHTTTTTCCSCEEEESTT
T ss_pred cccCCCCHHHHHHHHHHHcCCCCCccCCEEEECCC
Confidence 2234789999999999998752 2356 4555554
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=190.97 Aligned_cols=214 Identities=23% Similarity=0.181 Sum_probs=156.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|++|||||+|+||+++++.|+++|++|++++|+.++. .... ..++.++.+|++|++++.++++
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~g 78 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV---VADL-----GDRARFAAADVTDEAAVASALDLAETMG 78 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHH---HHHT-----CTTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHH---HHhc-----CCceEEEECCCCCHHHHHHHHHHHHHhC
Confidence 5689999999999999999999999999999999954322 1111 3578999999999998888776
Q ss_pred CccEEEEccCCCC---------CCCCCcchhhhhHHHHHHHHHHHHHhcC-----------CCccEEEEecchhhhccCC
Q 020266 81 GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKF-----------PSIKRVVLTSSMAAVLNTG 140 (328)
Q Consensus 81 ~~d~vih~a~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~-----------~~~~~~v~~SS~~~~~~~~ 140 (328)
++|++|||||... ....+.+...+++|+.++.++++++.+. .+.+++|++||.++..+.+
T Consensus 79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 158 (257)
T 3tl3_A 79 TLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQI 158 (257)
T ss_dssp CEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCHH
T ss_pred CCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCCC
Confidence 7999999999632 1334456788999999999999988753 1345899999976554211
Q ss_pred CCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHH
Q 020266 141 KPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI 217 (328)
Q Consensus 141 ~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~ 217 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++..... .........
T Consensus 159 ----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~ 213 (257)
T 3tl3_A 159 ----------------------GQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASL---PEEARASLG 213 (257)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC------CHHHHHHHH
T ss_pred ----------------------CCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhc---cHHHHHHHH
Confidence 1245999999999999999887 489999999999998864322 122222333
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCCcE-EEec
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRY-CLVE 257 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~-~~~~ 257 (328)
...+. ...+.+++|+|+++++++.++...|.. ++.+
T Consensus 214 ~~~~~----~~r~~~p~dva~~v~~l~s~~~itG~~i~vdG 250 (257)
T 3tl3_A 214 KQVPH----PSRLGNPDEYGALAVHIIENPMLNGEVIRLDG 250 (257)
T ss_dssp HTSSS----SCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred hcCCC----CCCccCHHHHHHHHHHHhcCCCCCCCEEEECC
Confidence 32221 135889999999999999886667844 4443
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=191.13 Aligned_cols=230 Identities=11% Similarity=0.016 Sum_probs=164.2
Q ss_pred ccCCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 5 AAAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
...++|+|+||||+ |+||+++++.|+++|++|++++|+......+..+.... +++.++.+|++|++++.++++
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~ 86 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF---GSELVFPCDVADDAQIDALFASL 86 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc---CCcEEEECCCCCHHHHHHHHHHH
Confidence 34568999999999 99999999999999999999999854444443333222 357899999999998888775
Q ss_pred -----CccEEEEccCCCCC----------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCC
Q 020266 81 -----GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 -----~~d~vih~a~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||.++..+.+
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~---- 162 (271)
T 3ek2_A 87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIP---- 162 (271)
T ss_dssp HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT----
T ss_pred HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCCC----
Confidence 67999999997432 2233456788999999999999998752 235899999976654211
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
....|+.||.+.+.+++.++.++ |+++++++||.|.++..... ..............+
T Consensus 163 ------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~ 223 (271)
T 3ek2_A 163 ------------------NYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI-KSFGKILDFVESNSP 223 (271)
T ss_dssp ------------------TTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC-HHHHHHHHHHHHHST
T ss_pred ------------------CccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc-cchHHHHHHHHhcCC
Confidence 13559999999999999998864 89999999999998754332 112223333333222
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec-CccCHHHH
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE-RVSHYSEI 265 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~-~~~~~~el 265 (328)
...+.+++|+|+++++++... ...| .+++.+ ...++.++
T Consensus 224 -----~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~~ 266 (271)
T 3ek2_A 224 -----LKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGM 266 (271)
T ss_dssp -----TSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCCC
T ss_pred -----cCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhhh
Confidence 234789999999999999753 3456 556654 44444444
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=191.22 Aligned_cols=220 Identities=18% Similarity=0.145 Sum_probs=158.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+|+||||+|+||++++++|+++|++|++++|+..+ .+.+....... ..++.++.+|++|++++.++++
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~ 103 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK--GYKAAVIKFDAASESDFIEAIQTIVQ 103 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3468899999999999999999999999999999996443 23333333222 3578999999999998887775
Q ss_pred ---CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||..... ..+.+...+++|+.++.++++++.+. .+.+++|++||.++..+.+
T Consensus 104 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 174 (271)
T 4iin_A 104 SDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNM--------- 174 (271)
T ss_dssp HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT---------
T ss_pred hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCC---------
Confidence 789999999974322 23345678999999999998887553 1457899999987665321
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|.+.+.+++.++.+ .++++++++||.+.++...... ......... ...
T Consensus 175 -------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~---~~~~~~~~~-----~~~ 233 (271)
T 4iin_A 175 -------------GQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLK---DELKADYVK-----NIP 233 (271)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------CGG-----GCT
T ss_pred -------------CchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhc---HHHHHHHHh-----cCC
Confidence 1355999999999999999887 5899999999999887532211 000011111 122
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+.+++|+|++++.++.... ..| .+++.+
T Consensus 234 ~~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdG 267 (271)
T 4iin_A 234 LNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNG 267 (271)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCC
Confidence 3458899999999999987543 356 555544
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=189.84 Aligned_cols=227 Identities=17% Similarity=0.138 Sum_probs=159.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC---------hhhhhhhhhc-cCCCCcEEEEEccCCCcCch
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND---------PKKTRHLLAL-DGASERLQLFKANLLEEGSF 75 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~ 75 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|++.. .+.+...... .....++.++++|++|++++
T Consensus 25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM 104 (299)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 4568999999999999999999999999999999987321 2222222111 11235789999999999988
Q ss_pred HHhhC-------CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhcc
Q 020266 76 DSIVD-------GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 76 ~~~~~-------~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~ 138 (328)
.++++ ++|+||||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.++..+
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~ 184 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRG 184 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC
Confidence 87775 68999999996432 123445688999999999999987553 23578999999876542
Q ss_pred CCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC---------
Q 020266 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL--------- 206 (328)
Q Consensus 139 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~--------- 206 (328)
.+ ....|+.||.+.+.+++.++.++ |+++++|+||.|.+|......
T Consensus 185 ~~----------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~ 242 (299)
T 3t7c_A 185 AE----------------------NIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDL 242 (299)
T ss_dssp CT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTS
T ss_pred CC----------------------CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhh
Confidence 11 12459999999999999998875 899999999999998643200
Q ss_pred -cchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 207 -NTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.................+ ..+.+++|+|+++++++.... ..| .+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~p---~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG 294 (299)
T 3t7c_A 243 ENPTVEDFQVASRQMHVLP---IPYVEPADISNAILFLVSDDARYITGVSLPVDG 294 (299)
T ss_dssp SSCCHHHHHHHHHHHSSSS---CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ccchhhHHHHHhhhhcccC---cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCC
Confidence 000000000000001111 457899999999999997542 356 455544
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=190.46 Aligned_cols=220 Identities=15% Similarity=0.098 Sum_probs=157.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+++||||+|+||++++++|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.++++ +
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999999999865544433332221 2468899999999998888776 7
Q ss_pred ccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---C-ccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---S-IKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 82 ~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
+|+||||||.... ...+.+...+++|+.++.++++++.+.. + .+++|++||.++.++.+
T Consensus 80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 147 (256)
T 1geg_A 80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNP------------ 147 (256)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC------------
Confidence 9999999986432 2233455789999999999988776531 2 46999999976655311
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcc--------hHHHHHHHHhCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNT--------SAAAVLSLIKGAQ 221 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~--------~~~~~~~~~~~~~ 221 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.+.+|........ ............
T Consensus 148 ----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (256)
T 1geg_A 148 ----------ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI- 216 (256)
T ss_dssp ----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTC-
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcC-
Confidence 1245999999999999999876 489999999999988742100000 000111111111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
....+.+++|+|+++++++..+ ...| .+++.+
T Consensus 217 ----p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 251 (256)
T 1geg_A 217 ----TLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDG 251 (256)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred ----CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence 1234889999999999998754 2356 444443
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-26 Score=197.37 Aligned_cols=215 Identities=12% Similarity=0.114 Sum_probs=153.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|++|||||+|+||+++++.|+++|++|++++|+.+..+.+...+.... ...+.++++|++|++++.++++
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 108 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-GNIVRAVVCDVGDPDQVAALFAAVRAE 108 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999998766555443332221 2236899999999998887775
Q ss_pred --CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC---C--ccEEEEecchhhhccCCCCCCCCc
Q 020266 81 --GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---S--IKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 --~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. + .++||++||.++..+.+
T Consensus 109 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~------- 181 (281)
T 4dry_A 109 FARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRP------- 181 (281)
T ss_dssp HSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCT-------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCC-------
Confidence 67999999997422 2334556789999999998888776531 1 46899999987654211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTY 223 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~ 223 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.|.++..... ..+. ...
T Consensus 182 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-----------~~~~~~~~ 235 (281)
T 4dry_A 182 ---------------NSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARM-----------STGVLQAN 235 (281)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC------------------CEEECTT
T ss_pred ---------------CChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhh-----------cchhhhhh
Confidence 2356999999999999999876 589999999999988743211 0100 001
Q ss_pred C-CCCccceeHHHHHHHHHHhhcCCCCCCcEE
Q 020266 224 P-NVTFGWVNVKDVANAHIQAFEVPSANGRYC 254 (328)
Q Consensus 224 ~-~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~ 254 (328)
. .....++.++|+|+++++++.++...++.+
T Consensus 236 ~~~~~~~~~~pedvA~~v~fL~s~~~~~~i~~ 267 (281)
T 4dry_A 236 GEVAAEPTIPIEHIAEAVVYMASLPLSANVLT 267 (281)
T ss_dssp SCEEECCCBCHHHHHHHHHHHHHSCTTEEEEE
T ss_pred hcccccCCCCHHHHHHHHHHHhCCCccCcccc
Confidence 1 112347899999999999999876554443
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=189.09 Aligned_cols=220 Identities=15% Similarity=0.111 Sum_probs=157.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC--hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+|+++||||+|+||+++++.|+++|++|++++|+.++ ...+...+.. ...++.++.+|++|++++.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEA--ADQKAVFVGLDVTDKANFDSAIDEAAEKL 79 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999997655 3333222221 13578899999999998887775
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---Cc-cEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SI-KRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~-~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. +. ++||++||.+++.+.+
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 149 (258)
T 3a28_C 80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFP---------- 149 (258)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCC----------
Confidence 78999999997432 2233456789999999999999887631 34 7999999976554211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC--------cchHHHHHHHHhC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL--------NTSAAAVLSLIKG 219 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~--------~~~~~~~~~~~~~ 219 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++...... .............
T Consensus 150 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (258)
T 3a28_C 150 ------------ILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSS 217 (258)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTT
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhc
Confidence 12459999999999999998764 899999999999876311000 0000111122221
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
. ....+.+++|+|+++++++... ...| .+++.+
T Consensus 218 ~-----p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 253 (258)
T 3a28_C 218 I-----ALGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDG 253 (258)
T ss_dssp C-----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred C-----CCCCccCHHHHHHHHHHHhCcccCCCCCCEEEECC
Confidence 1 1234889999999999998754 2356 445544
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=182.47 Aligned_cols=213 Identities=15% Similarity=0.052 Sum_probs=160.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+||||||++.||+++++.|+++|++|++.+|+++....+.. ...++.++++|++|+++++++++ +
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~ 75 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK------ERPNLFYFHGDVADPLTLKKFVEYAMEKLQR 75 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT------TCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH------hcCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999998654443222 13578899999999998887765 6
Q ss_pred ccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 82 CDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 82 ~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
+|++|||||... ....+.++..+++|+.++.++.+++.+.+ +.+++|++||.++..+.+
T Consensus 76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~~-------------- 141 (247)
T 3ged_A 76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSEP-------------- 141 (247)
T ss_dssp CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCCT--------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCCC--------------
Confidence 899999998632 23345677899999999999988776541 236899999987655321
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcccee
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (328)
....|+.||.....+.+.++.+. ++++++|-||.+-.+..... ........| ...+..
T Consensus 142 --------~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~~-------~~~~~~~~P-----l~R~g~ 201 (247)
T 3ged_A 142 --------DSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQEF-------TQEDCAAIP-----AGKVGT 201 (247)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---C-------CHHHHHTST-----TSSCBC
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHHH-------HHHHHhcCC-----CCCCcC
Confidence 12459999999999999998875 79999999999977653321 122222222 223678
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEecCccC
Q 020266 233 VKDVANAHIQAFEVPSANGRYCLVERVSH 261 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~~~g~~~~~~~~~~ 261 (328)
++|+|.++++++...-..|.-..+++.+|
T Consensus 202 pediA~~v~fL~s~~~iTG~~i~VDGG~s 230 (247)
T 3ged_A 202 PKDISNMVLFLCQQDFITGETIIVDGGMS 230 (247)
T ss_dssp HHHHHHHHHHHHHCSSCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEECcCHH
Confidence 99999999999986556775555555444
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=183.93 Aligned_cols=213 Identities=16% Similarity=0.099 Sum_probs=156.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.++...+.... ++.++.+|++|++++.++++
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAHL 75 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-------CCEEEEecCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999865443322211 27889999999998887765
Q ss_pred -CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.+ .++.+
T Consensus 76 g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~~----------- 143 (245)
T 1uls_A 76 GRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGNL----------- 143 (245)
T ss_dssp SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCCT-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCCC-----------
Confidence 48999999997432 123345678899999999998887653 1457999999976 55311
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+.+.++.+ .|+++++++||.+.++..... ............+ ..
T Consensus 144 -----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~p-----~~ 204 (245)
T 1uls_A 144 -----------GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV---PEKVREKAIAATP-----LG 204 (245)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS---CHHHHHHHHHTCT-----TC
T ss_pred -----------CchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhc---CHHHHHHHHhhCC-----CC
Confidence 1245999999999999998876 389999999999988753321 1122222333222 12
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
.+++++|+|+++++++... ...| .+.+.+
T Consensus 205 ~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdg 236 (245)
T 1uls_A 205 RAGKPLEVAYAALFLLSDESSFITGQVLFVDG 236 (245)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcCCEEEECC
Confidence 3789999999999998753 2356 444444
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=191.65 Aligned_cols=220 Identities=16% Similarity=0.132 Sum_probs=155.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+ ..++.++.+|++|++++.++++
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 466899999999999999999999999999999999865444332222 2468899999999998877765
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||.... ...+.+...+++|+.++.++++++. +. + ++||++||.+++.+.+
T Consensus 78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~-g~iv~isS~~~~~~~~--------- 146 (253)
T 1hxh_A 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET-G-GSIINMASVSSWLPIE--------- 146 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-C-EEEEEECCGGGTSCCT---------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-C-CEEEEEcchhhcCCCC---------
Confidence 47999999997432 1233456788999998887776554 33 4 7999999976554211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc-----CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-CCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTY 223 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~ 223 (328)
....|+.||.+.+.+++.++.+. |++++++|||.+++|....... ........... +..
T Consensus 147 -------------~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~~ 211 (253)
T 1hxh_A 147 -------------QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLP--KGVSKEMVLHDPKLN 211 (253)
T ss_dssp -------------TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSC--TTCCHHHHBCBTTTB
T ss_pred -------------CCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccc--hhhhHHHHhhhhccC
Confidence 12459999999999999988763 8999999999999974211000 00001101110 011
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
....+.+++|+|+++++++..+. ..| .+++.++
T Consensus 212 --p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 247 (253)
T 1hxh_A 212 --RAGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp --TTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred --ccCCCCCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence 12358899999999999987542 356 4455443
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=188.17 Aligned_cols=212 Identities=20% Similarity=0.158 Sum_probs=154.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHH-CCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLS-RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+||++|||||+|+||+++++.|++ .|+.|++.+|+.+.. ...+.++.+|++|++++.++++
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 69 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS------------AENLKFIKADLTKQQDITNVLDIIKNV 69 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC------------CTTEEEEECCTTCHHHHHHHHHHTTTC
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc------------cccceEEecCcCCHHHHHHHHHHHHhC
Confidence 3578999999999999999999999 789999999876522 1357899999999999888776
Q ss_pred CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 81 GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 81 ~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
++|++|||||... ....+.+...+++|+.++.++++++.+... .+++|++||.+++.+.+
T Consensus 70 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-------------- 135 (244)
T 4e4y_A 70 SFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKP-------------- 135 (244)
T ss_dssp CEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCT--------------
T ss_pred CCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCC--------------
Confidence 7899999999742 222344567899999999999999987621 24899999976554211
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcc--------hHHHHHHHHhCCCCC
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNT--------SAAAVLSLIKGAQTY 223 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~--------~~~~~~~~~~~~~~~ 223 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.+.+|........ ...........
T Consensus 136 --------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 203 (244)
T 4e4y_A 136 --------NSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKE---- 203 (244)
T ss_dssp --------TBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTT----
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhc----
Confidence 1245999999999999999884 489999999999988742110000 00011112221
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.....+.+++|+|+++++++.... ..| .+++.+
T Consensus 204 -~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 239 (244)
T 4e4y_A 204 -FPLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDG 239 (244)
T ss_dssp -STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -CCCCCCcCHHHHHHHHHHHhcCccccccCCeEeECC
Confidence 223458899999999999997543 356 445543
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-25 Score=186.37 Aligned_cols=213 Identities=17% Similarity=0.127 Sum_probs=157.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccC--CCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL--LEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~~~~~~~~--- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+.... ..++.++.+|+ +|++++.++++
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-GRQPQWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCCceEEEEecccCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999998766555443332221 23678899999 88887777665
Q ss_pred ----CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ----~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.++..+.+
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~------- 160 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA------- 160 (252)
T ss_dssp HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCT-------
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCCC-------
Confidence 68999999996321 223345578999999999999988432 1557999999987655211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcC--ccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS--IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.||.+.+.+++.++.+++ ++++++.||.+.++. ....... .
T Consensus 161 ---------------~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~-----------~~~~~~~-----~ 209 (252)
T 3f1l_A 161 ---------------NWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM-----------RASAFPT-----E 209 (252)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH-----------HHHHCTT-----C
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch-----------hhhhCCc-----c
Confidence 124599999999999999998864 899999999887652 1111111 1
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
....+.+++|+|.++++++.... ..| .+++.+
T Consensus 210 ~~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdg 244 (252)
T 3f1l_A 210 DPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQP 244 (252)
T ss_dssp CGGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSC
T ss_pred chhccCCHHHHHHHHHHHcCccccCCCCCEEEeCC
Confidence 12347789999999999987543 356 455544
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=187.39 Aligned_cols=229 Identities=18% Similarity=0.134 Sum_probs=160.3
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC----------Chhhhhhhhhcc-CCCCcEEEEEccCCCcC
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN----------DPKKTRHLLALD-GASERLQLFKANLLEEG 73 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~ 73 (328)
..+++|+++||||+|+||+++++.|+++|++|++++|+.. ....+....... ....++.++.+|++|++
T Consensus 7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 7 GKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 3467899999999999999999999999999999998432 222222222111 12357899999999999
Q ss_pred chHHhhC-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhc
Q 020266 74 SFDSIVD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVL 137 (328)
Q Consensus 74 ~~~~~~~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~ 137 (328)
++.++++ ++|++|||||.... ...+.+...+++|+.++.++++++.+. ...++||++||.++..
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 166 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK 166 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence 8887775 58999999997432 233456678999999999999986553 1246899999987654
Q ss_pred cCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHH
Q 020266 138 NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVL 214 (328)
Q Consensus 138 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~ 214 (328)
+.+ ....|+.||.+.+.+++.++.+. |+++++++||.+.+|..... .......
T Consensus 167 ~~~----------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~--~~~~~~~ 222 (277)
T 3tsc_A 167 MQP----------------------FMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGD--MVTAVGQ 222 (277)
T ss_dssp CCS----------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHH--HHHHHHH
T ss_pred CCC----------------------CchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccch--hhhhhhh
Confidence 211 13559999999999999998874 89999999999998753210 0111111
Q ss_pred HHHhCC---CCC-CCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 215 SLIKGA---QTY-PNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 215 ~~~~~~---~~~-~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...... ..+ ......+.+++|+|+++++++.... ..| .+++.+
T Consensus 223 ~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 272 (277)
T 3tsc_A 223 AMETNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQ 272 (277)
T ss_dssp HHHTCGGGTTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cccccHHHHHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCC
Confidence 111111 111 1112248999999999999997543 356 455544
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-24 Score=187.92 Aligned_cols=220 Identities=15% Similarity=0.110 Sum_probs=158.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEe-cCCCChhhhhhhhhccCCCCcEEEEEccCCCcC-----------
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEG----------- 73 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~----------- 73 (328)
.+++|++|||||+|+||+++++.|+++|++|++++ |+.+....+...+... ...++.++.+|++|++
T Consensus 43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 121 (328)
T 2qhx_A 43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR-RPNSAITVQADLSNVATAPVSGADGSA 121 (328)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSSSCBCC-------C
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh-cCCeEEEEEeeCCCchhcccccccccc
Confidence 35678999999999999999999999999999999 8765544433332211 1357899999999999
Q ss_pred ------chHHhhC-------CccEEEEccCCCCCC-----C--------------CCcchhhhhHHHHHHHHHHHHHhcC
Q 020266 74 ------SFDSIVD-------GCDGVCHTASPFYHD-----A--------------KDPQVELLDPAVKGTLNVLNSCAKF 121 (328)
Q Consensus 74 ------~~~~~~~-------~~d~vih~a~~~~~~-----~--------------~~~~~~~~~~N~~~~~~l~~~~~~~ 121 (328)
++.++++ ++|+||||||..... . .+.+...+++|+.++.++++++.+.
T Consensus 122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~ 201 (328)
T 2qhx_A 122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR 201 (328)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877765 789999999974321 1 2334567899999999999987642
Q ss_pred C---C------ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccE
Q 020266 122 P---S------IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDL 189 (328)
Q Consensus 122 ~---~------~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~ 189 (328)
. + .++||++||.++..+.+ ....|+.+|.+.+.+++.++.+. |+++
T Consensus 202 m~~~~~~~~~~~g~IV~isS~~~~~~~~----------------------~~~~Y~asKaal~~l~~~la~el~~~gIrv 259 (328)
T 2qhx_A 202 VAGTPAKHRGTNYSIINMVDAMTNQPLL----------------------GYTIYTMAKGALEGLTRSAALELAPLQIRV 259 (328)
T ss_dssp HHHSCGGGSCSCEEEEEECCTTTTSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred HHhcCCcCCCCCcEEEEECchhhccCCC----------------------CcHHHHHHHHHHHHHHHHHHHHHhhcCcEE
Confidence 1 3 57899999976544211 12459999999999999998874 8999
Q ss_pred EEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 190 ~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
++|+||.|.++. .. . ...........+. . ..+.+++|+|+++++++... ...| .+++.+
T Consensus 260 n~v~PG~v~T~~-~~-~---~~~~~~~~~~~p~---~-~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdG 321 (328)
T 2qhx_A 260 NGVGPGLSVLVD-DM-P---PAVWEGHRSKVPL---Y-QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDG 321 (328)
T ss_dssp EEEEESSBSCCC-CS-C---HHHHHHHHTTCTT---T-TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred EEEecCcccCCc-cc-c---HHHHHHHHhhCCC---C-CCCCCHHHHHHHHHHHhCccccCccCcEEEECC
Confidence 999999999886 22 1 2333333332221 1 14789999999999998643 2356 445544
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-25 Score=188.90 Aligned_cols=213 Identities=18% Similarity=0.150 Sum_probs=153.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRD 81 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999865544433333221 3468899999999988777665
Q ss_pred --CccEEEEccCCC-C-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPF-Y-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~-~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||.. . ....+.+...+++|+.++.++++++.+.. +.++||++||.++..+.+
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 152 (262)
T 1zem_A 82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPP--------- 152 (262)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCT---------
T ss_pred hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCC---------
Confidence 789999999864 2 12233456788999999999999876531 346999999987665311
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCC------------CcchHH-HH
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPT------------LNTSAA-AV 213 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~------------~~~~~~-~~ 213 (328)
....|+.||.+.+.+.+.++.+ +|+++++|+||.+.++..... ...... ..
T Consensus 153 -------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (262)
T 1zem_A 153 -------------NMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVA 219 (262)
T ss_dssp -------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHH
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHH
Confidence 1245999999999999998875 489999999999877631100 000011 11
Q ss_pred HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 214 LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.......| ...+..++|+|+++++++...
T Consensus 220 ~~~~~~~p-----~~r~~~p~dvA~~v~~l~s~~ 248 (262)
T 1zem_A 220 QQMIGSVP-----MRRYGDINEIPGVVAFLLGDD 248 (262)
T ss_dssp HHHHHTST-----TSSCBCGGGSHHHHHHHHSGG
T ss_pred HHHHhcCC-----CCCCcCHHHHHHHHHHHcCch
Confidence 22222211 124779999999999998753
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-25 Score=185.84 Aligned_cols=205 Identities=16% Similarity=0.140 Sum_probs=151.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCC-CcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGAS-ERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++.+.+...+...... .++.++.+|++|++++.++++
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 355889999999999999999999999999999999877665554443332212 578899999999998887765
Q ss_pred ---CccEEEEccCCCCCC----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 ---GCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 ---~~d~vih~a~~~~~~----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||..... ..+.+...+++|+.++.++++++.+. .+.+++|++||.++.++..
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 153 (250)
T 3nyw_A 84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFA---------- 153 (250)
T ss_dssp HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------C----------
T ss_pred hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCC----------
Confidence 689999999974322 12345578899999999999988542 1457899999987665211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
+...|+.||.+.+.+++.++.++ |+++++++||.+.++.. .... . ....
T Consensus 154 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~-----------~~~~--~---~~~~ 205 (250)
T 3nyw_A 154 ------------DGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMA-----------KKAG--T---PFKD 205 (250)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHH-----------HHTT--C---CSCG
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchh-----------hhcC--C---Cccc
Confidence 12459999999999999998874 89999999999876521 1110 1 1122
Q ss_pred ccceeHHHHHHHHHHhhcCCC
Q 020266 228 FGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~ 248 (328)
..+++++|+|+++++++..+.
T Consensus 206 ~~~~~p~dva~~v~~l~s~~~ 226 (250)
T 3nyw_A 206 EEMIQPDDLLNTIRCLLNLSE 226 (250)
T ss_dssp GGSBCHHHHHHHHHHHHTSCT
T ss_pred ccCCCHHHHHHHHHHHHcCCC
Confidence 348899999999999998654
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=186.05 Aligned_cols=220 Identities=14% Similarity=0.112 Sum_probs=159.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEe-cCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..++|+||||||+|+||++++++|+++|++|++++ |+.............. ..++.++.+|++|++++.++++
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL--GFDFYASEGNVGDWDSTKQAFDKVKA 87 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999988 5555544433332222 3578899999999998887775
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 158 (256)
T 3ezl_A 88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQF--------- 158 (256)
T ss_dssp HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCS---------
T ss_pred hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCC---------
Confidence 68999999997432 223345578999999998888876442 1457899999987665321
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.+.++..... ............+
T Consensus 159 -------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~~----- 217 (256)
T 3ezl_A 159 -------------GQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI---RPDVLEKIVATIP----- 217 (256)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHHHST-----
T ss_pred -------------CCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcccccc---CHHHHHHHHhcCC-----
Confidence 2355999999999999999887 489999999999988743221 1233333333322
Q ss_pred CccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 227 TFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++... ...| .+++.+
T Consensus 218 ~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdg 251 (256)
T 3ezl_A 218 VRRLGSPDEIGSIVAWLASEESGFSTGADFSLNG 251 (256)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECC
Confidence 245789999999999998643 2356 556654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-25 Score=188.99 Aligned_cols=201 Identities=13% Similarity=0.069 Sum_probs=151.8
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
..+++|+|+||||+|+||++++++|+++|++|++++|+......+...+... ..++.++.+|++|++++.++++
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc--CCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999865544433332221 3478999999999998877765
Q ss_pred ---CccEEEEccCCCCCCC-----CCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFYHDA-----KDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~~~~-----~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|+||||||...... .+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.
T Consensus 105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 174 (272)
T 1yb1_A 105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV---------- 174 (272)
T ss_dssp HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH----------
T ss_pred HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC----------
Confidence 6899999999743221 2234578899999988888776542 156799999997654310
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc------CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK------SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~------~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
+ ....|+.+|.+.+.+++.++.+. |++++++|||.+.++..... . .
T Consensus 175 -------~-----~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~---~----~--------- 226 (272)
T 1yb1_A 175 -------P-----FLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP---S----T--------- 226 (272)
T ss_dssp -------H-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT---H----H---------
T ss_pred -------C-----CchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc---c----c---------
Confidence 0 12459999999999999988864 89999999999998753210 0 0
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
....+++++|+|++++.++.++
T Consensus 227 --~~~~~~~~~dva~~i~~~~~~~ 248 (272)
T 1yb1_A 227 --SLGPTLEPEEVVNRLMHGILTE 248 (272)
T ss_dssp --HHCCCCCHHHHHHHHHHHHHTT
T ss_pred --cccCCCCHHHHHHHHHHHHHcC
Confidence 0124789999999999999865
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=185.85 Aligned_cols=209 Identities=15% Similarity=0.172 Sum_probs=150.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+|+||||+|+||+++++.|+++|++|++++|+.++.. .+.++.+|++|++++.++++
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (253)
T 2nm0_A 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE-------------GFLAVKCDITDTEQVEQAYKEIEET 84 (253)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc-------------cceEEEecCCCHHHHHHHHHHHHHH
Confidence 445789999999999999999999999999999999765432 36789999999998877765
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|+||||||.... ...+.+...+++|+.++.++++++.+.. +.++||++||.++..+.
T Consensus 85 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----------- 153 (253)
T 2nm0_A 85 HGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGS----------- 153 (253)
T ss_dssp TCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCH-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC-----------
Confidence 47999999997432 2345567889999999999998776531 45799999997544310
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
+ ....|+.+|.+.+.+++.++.+. |+++++++||.+.++...... ...........+ .
T Consensus 154 ------~-----~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---~~~~~~~~~~~p-----~ 214 (253)
T 2nm0_A 154 ------A-----GQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLT---DEQRANIVSQVP-----L 214 (253)
T ss_dssp ------H-----HHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC------------CHHHHHTTCT-----T
T ss_pred ------C-----CcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcC---HHHHHHHHhcCC-----C
Confidence 0 12459999999999999988863 799999999999877432110 011112222111 2
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCCc-EEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g~-~~~~~ 257 (328)
..+++++|+|++++.++..+. ..|. +.+.+
T Consensus 215 ~~~~~p~dvA~~i~~l~s~~~~~~tG~~i~vdG 247 (253)
T 2nm0_A 215 GRYARPEEIAATVRFLASDDASYITGAVIPVDG 247 (253)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHhCccccCCcCcEEEECC
Confidence 348899999999999987542 3564 44443
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=187.49 Aligned_cols=224 Identities=17% Similarity=0.098 Sum_probs=158.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+..+ .+.+...+.. ...++.++.+|++|++++.++++
T Consensus 26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK--NGSDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHH--hCCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999997643 2222222221 13478899999999988777664
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+.. +.++||++||.++..+..
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 172 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAV----------- 172 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSC-----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCC-----------
Confidence 68999999997432 1234456789999999999999988752 447999999976544211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCC-------CC-cchHHHHHHHHh--
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQP-------TL-NTSAAAVLSLIK-- 218 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~-------~~-~~~~~~~~~~~~-- 218 (328)
. ....|+.||.+.+.+++.++.+ +|+++++++||.+.++.... .. ............
T Consensus 173 ----~------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 1g0o_A 173 ----P------KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQ 242 (283)
T ss_dssp ----S------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHH
T ss_pred ----C------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhc
Confidence 0 1255999999999999999876 48999999999998873110 00 001122222222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
..+ ...+.+++|+|+++++++.... ..| .+++.+
T Consensus 243 ~~p-----~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdg 279 (283)
T 1g0o_A 243 WSP-----LRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDG 279 (283)
T ss_dssp SCT-----TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCC-----CCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCC
Confidence 221 2347899999999999997542 356 444443
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=183.66 Aligned_cols=221 Identities=18% Similarity=0.102 Sum_probs=161.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|+.+..+.....+ ..+...+++|++|+++++++++
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999876555433332 3467889999999998887765
Q ss_pred --CccEEEEccCCC-----CCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 --GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~-----~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|++|||||.. .+...+.|+..+++|+.|+.++.+++.+.+ +.+++|.+||.+...+.+
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~------------ 168 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTP------------ 168 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCT------------
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCC------------
Confidence 689999999862 233455678899999999999999998863 335899999986655321
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcc----hHHHHHHHHhCCCCCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT----SAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~----~~~~~~~~~~~~~~~~~ 225 (328)
....|+.||.+...+.+.++.++ |+++.+|-||.+..|........ .......+....|
T Consensus 169 ----------~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~P---- 234 (273)
T 4fgs_A 169 ----------AFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVP---- 234 (273)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHST----
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCC----
Confidence 12459999999999999999875 79999999999988753322111 1122223333222
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCCcEEEecC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~ 258 (328)
...+..++|+|.++++++.... ..|....+++
T Consensus 235 -lgR~g~peeiA~~v~FLaSd~a~~iTG~~i~VDG 268 (273)
T 4fgs_A 235 -MGRVGRAEEVAAAALFLASDDSSFVTGAELFVDG 268 (273)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -CCCCcCHHHHHHHHHHHhCchhcCccCCeEeECc
Confidence 1236789999999999996532 3675544443
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=186.34 Aligned_cols=225 Identities=18% Similarity=0.114 Sum_probs=159.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|++|||||+|+||++++++|+++|++|++++++.. ..+.+...+... ..++.++.+|++|++++.++++
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL--GSDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999877543 333333333222 3578999999999998887775
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|++|||||.... ...+.+...+++|+.|+.++++++.+.. ..+++|++||.+.... +
T Consensus 93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-~----------- 160 (270)
T 3is3_A 93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDF-S----------- 160 (270)
T ss_dssp HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTC-C-----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccC-C-----------
Confidence 68999999997432 2334566889999999999999988752 2358999999652210 0
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCC-------C-cchHHHHHHHHhCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPT-------L-NTSAAAVLSLIKGA 220 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~-------~-~~~~~~~~~~~~~~ 220 (328)
. .....|+.||.+.+.+++.++.+ +|+++++++||.+.++..... . ..............
T Consensus 161 ----~-----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (270)
T 3is3_A 161 ----V-----PKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHA 231 (270)
T ss_dssp ----C-----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHH
T ss_pred ----C-----CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhc
Confidence 0 02356999999999999999887 489999999999998742200 0 00111112211111
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.....+.+++|+|+++++++.... ..| .+++.+
T Consensus 232 ----~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG 267 (270)
T 3is3_A 232 ----SPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDG 267 (270)
T ss_dssp ----STTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ----CCCCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCC
Confidence 123357899999999999987432 356 445543
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-25 Score=185.57 Aligned_cols=209 Identities=14% Similarity=0.151 Sum_probs=151.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+|+||||+|+||++++++|+++|++|++++|+.++... +..+.+|++|++++.++++
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-------------~~~~~~D~~~~~~~~~~~~~~~~~ 78 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG-------------LFGVEVDVTDSDAVDRAFTAVEEH 78 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT-------------SEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH-------------hcCeeccCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999998765432 1237899999998877765
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++.++.+
T Consensus 79 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 148 (247)
T 1uzm_A 79 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIG---------- 148 (247)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC---------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCC----------
Confidence 57999999997432 223455688999999999999987642 1557999999976655311
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+.+.+++.++.+ +|+++++++||.+.++..... ............ + .
T Consensus 149 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~---p--~ 208 (247)
T 1uzm_A 149 ------------NQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL---DERIQQGALQFI---P--A 208 (247)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS---CHHHHHHHGGGC---T--T
T ss_pred ------------CChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhc---CHHHHHHHHhcC---C--C
Confidence 1245999999999999998876 489999999999987632110 011111111111 1 2
Q ss_pred ccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
..+++++|+|+++++++... ...| .+++.+
T Consensus 209 ~~~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdg 241 (247)
T 1uzm_A 209 KRVGTPAEVAGVVSFLASEDASYISGAVIPVDG 241 (247)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHcCccccCCcCCEEEECC
Confidence 34889999999999998753 2356 455544
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=181.00 Aligned_cols=212 Identities=17% Similarity=0.183 Sum_probs=152.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+++||||+|+||+++++.|+++|++|++++|+.++ +.... ++.++.+|++| +++.++++ +
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~-------~~~~~~~D~~~-~~~~~~~~~~~~~~g~ 70 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSL-------GAVPLPTDLEK-DDPKGLVKRALEALGG 70 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHH-------TCEEEECCTTT-SCHHHHHHHHHHHHTS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhh-------CcEEEecCCch-HHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999998654 11111 26788999999 88776654 7
Q ss_pred ccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 82 ~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
+|+||||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.+++.+.. .
T Consensus 71 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------~ 138 (239)
T 2ekp_A 71 LHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG------------P 138 (239)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------------T
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCC------------C
Confidence 8999999996432 123345678899999999999987542 1457999999976554210 0
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
+ +...|+.||.+.+.+.+.++.+. |++++++|||.+.++..... ..............+ ...+
T Consensus 139 ~--------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~p-----~~~~ 204 (239)
T 2ekp_A 139 V--------PIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPL-RQNPELYEPITARIP-----MGRW 204 (239)
T ss_dssp S--------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-HTCHHHHHHHHTTCT-----TSSC
T ss_pred C--------CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhcc-ccCHHHHHHHHhcCC-----CCCC
Confidence 0 23559999999999999998874 89999999999998742210 000122222222211 2347
Q ss_pred eeHHHHHHHHHHhhcCCC--CCCc-EEEec
Q 020266 231 VNVKDVANAHIQAFEVPS--ANGR-YCLVE 257 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~--~~g~-~~~~~ 257 (328)
.+++|+|++++.++.... ..|. +++.+
T Consensus 205 ~~~~dvA~~~~~l~s~~~~~~tG~~~~vdg 234 (239)
T 2ekp_A 205 ARPEEIARVAAVLCGDEAEYLTGQAVAVDG 234 (239)
T ss_dssp BCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred cCHHHHHHHHHHHcCchhcCCCCCEEEECC
Confidence 899999999999987532 3564 44443
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=182.45 Aligned_cols=192 Identities=22% Similarity=0.160 Sum_probs=138.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|+|+||||+|+||++++++|+++|++|++++|+.++...+.... .++.++.+|++|++++.++++ +
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVREEGDWARAVAAMEEAFGE 78 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------hhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999999999765443332221 267889999999988877665 6
Q ss_pred ccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHH----hcCCCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 82 CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSC----AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 82 ~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
+|+|||+||.... ...+.+...+++|+.++.++++.+ ++. +.++||++||.+++.+.+
T Consensus 79 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~~------------ 145 (234)
T 2ehd_A 79 LSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSLAGKNPFK------------ 145 (234)
T ss_dssp CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCTTTTSCCT------------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCchhcCCCC------------
Confidence 8999999996432 122345578899999998766654 444 568999999976543210
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.+|.+.+.+++.++.+ .|++++++|||.+.++..... . .. ..
T Consensus 146 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--------~-----~~------~~ 196 (234)
T 2ehd_A 146 ----------GGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGNT--------P-----GQ------AW 196 (234)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC----------------------------------
T ss_pred ----------CCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCccccc--------c-----cc------cC
Confidence 1245999999999999888775 489999999999887642210 0 00 11
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 020266 230 WVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~ 248 (328)
+++++|+|++++.++..+.
T Consensus 197 ~~~~~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 197 KLKPEDVAQAVLFALEMPG 215 (234)
T ss_dssp -CCHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 5799999999999998653
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=184.41 Aligned_cols=197 Identities=18% Similarity=0.161 Sum_probs=150.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
++|+|+||||+|+||+++++.|+++|++|++++|+..+... ..+.+|++|++++.++++
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~--------------~~~~~d~~d~~~v~~~~~~~~~~~g 86 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD--------------HSFTIKDSGEEEIKSVIEKINSKSI 86 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS--------------EEEECSCSSHHHHHHHHHHHHTTTC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc--------------cceEEEeCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999998765321 356789999988877765
Q ss_pred CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 81 GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 81 ~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. ..++||++||.+++.+.+
T Consensus 87 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 153 (251)
T 3orf_A 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTS------------- 153 (251)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-------------
T ss_pred CCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCC-------------
Confidence 46999999996322 2233455788999999999999988752 235899999987655211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh-----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+++.++.+ .++++++++||.+.++. ....... ....
T Consensus 154 ---------~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~-----------~~~~~~~-----~~~~ 208 (251)
T 3orf_A 154 ---------GMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT-----------NRKYMSD-----ANFD 208 (251)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH-----------HHHHCTT-----SCGG
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc-----------hhhhccc-----cccc
Confidence 1355999999999999999888 47999999999987752 1111111 2345
Q ss_pred cceeHHHHHHHHHHhhcC---CCCCC-cEEEe
Q 020266 229 GWVNVKDVANAHIQAFEV---PSANG-RYCLV 256 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~---~~~~g-~~~~~ 256 (328)
.+++++|+|++++.++.. ....| .+++.
T Consensus 209 ~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~ 240 (251)
T 3orf_A 209 DWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFE 240 (251)
T ss_dssp GSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEE
T ss_pred ccCCHHHHHHHHHHHhcCccccCCcceEEEEe
Confidence 688999999999999987 33456 55654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-25 Score=183.85 Aligned_cols=196 Identities=18% Similarity=0.167 Sum_probs=144.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc----cE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC----DG 84 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----d~ 84 (328)
||+||||||+|+||+++++.|+++|++|++++|+.++...+...+ ..++.++.+|+++++++.++++.+ |+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~ 75 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSIPST 75 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSCCSE
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhcCCE
Confidence 578999999999999999999999999999999876554433322 357889999999999999888754 99
Q ss_pred EEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020266 85 VCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (328)
Q Consensus 85 vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 157 (328)
||||||.... ...+.+...+++|+.++.++++++.+.. ...++|++||.++..+.+
T Consensus 76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~----------------- 138 (230)
T 3guy_A 76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKA----------------- 138 (230)
T ss_dssp EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCCT-----------------
T ss_pred EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCCC-----------------
Confidence 9999996432 2233455788999999999999886641 123899999976554211
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHH
Q 020266 158 EVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVK 234 (328)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 234 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++...... .. .....+.+++
T Consensus 139 -----~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-----------~~-----~~~~~~~~~~ 197 (230)
T 3guy_A 139 -----QESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSG-----------KS-----LDTSSFMSAE 197 (230)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC--------------------------------CCCHH
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhcC-----------CC-----CCcccCCCHH
Confidence 12559999999999999999875 799999999999877432110 00 1123578999
Q ss_pred HHHHHHHHhhcCC
Q 020266 235 DVANAHIQAFEVP 247 (328)
Q Consensus 235 D~a~~~~~~~~~~ 247 (328)
|+|++++.++.++
T Consensus 198 dvA~~i~~l~~~~ 210 (230)
T 3guy_A 198 DAALMIHGALANI 210 (230)
T ss_dssp HHHHHHHHHCCEE
T ss_pred HHHHHHHHHHhCc
Confidence 9999999998865
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=183.12 Aligned_cols=201 Identities=18% Similarity=0.169 Sum_probs=148.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
|++|+++||||+|+||++++++|+++|++|++++|+.++.. ....++.+|++|++++.++++
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 68 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSL 68 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999876532 135678899999988777664
Q ss_pred ---CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 ---GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 ---~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. ..+++|++||.+++.+.+
T Consensus 69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 138 (236)
T 1ooe_A 69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP---------- 138 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT----------
T ss_pred CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCCC----------
Confidence 78999999996431 1123455788999999999999987742 235899999976554211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcC-----ccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS-----IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~-----~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+++.++.+.+ +++++++||.+.++.. ..... . .
T Consensus 139 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~-----------~~~~~-~----~ 190 (236)
T 1ooe_A 139 ------------SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMN-----------RKWMP-N----A 190 (236)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHH-----------HHHST-T----C
T ss_pred ------------CcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcch-----------hhcCC-C----c
Confidence 124599999999999999988754 9999999999987631 11111 1 1
Q ss_pred CCccceeHHHHHHHHHHhhcCC---CCCC-cEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP---SANG-RYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~---~~~g-~~~~~~ 257 (328)
....+++++|+|++++.++..+ ...| .+.+.+
T Consensus 191 ~~~~~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~g 226 (236)
T 1ooe_A 191 DHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITT 226 (236)
T ss_dssp CGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEE
T ss_pred cccccCCHHHHHHHHHHHHcCCCcccccccEEEEec
Confidence 1234678999999998666322 2346 445543
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-24 Score=183.65 Aligned_cols=220 Identities=16% Similarity=0.152 Sum_probs=157.1
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEe-cCCCChhhhhhhhhccCCCCcEEEEEccCCCcC---------
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEG--------- 73 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~--------- 73 (328)
|..+++|+++||||+|+||+++++.|+++|++|++++ |+.+....+...+... ...++.++++|++|++
T Consensus 4 m~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (291)
T 1e7w_A 4 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR-RPNSAITVQADLSNVATAPVSGADG 82 (291)
T ss_dssp ----CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSSSCBCCCC----
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhh-cCCeeEEEEeecCCccccccccccc
Confidence 4456789999999999999999999999999999999 8765544433332201 1357899999999999
Q ss_pred --------chHHhhC-------CccEEEEccCCCCCC-----C--------------CCcchhhhhHHHHHHHHHHHHHh
Q 020266 74 --------SFDSIVD-------GCDGVCHTASPFYHD-----A--------------KDPQVELLDPAVKGTLNVLNSCA 119 (328)
Q Consensus 74 --------~~~~~~~-------~~d~vih~a~~~~~~-----~--------------~~~~~~~~~~N~~~~~~l~~~~~ 119 (328)
++.++++ ++|+||||||..... . .+.+...+++|+.++.++++++.
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 162 (291)
T 1e7w_A 83 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 162 (291)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8877765 789999999964321 1 23345778999999999999876
Q ss_pred cC---CC------ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---Cc
Q 020266 120 KF---PS------IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SI 187 (328)
Q Consensus 120 ~~---~~------~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~ 187 (328)
+. .+ .++||++||..+..+.+ ....|+.||.+.+.+.+.++.+. |+
T Consensus 163 ~~m~~~~~~~~~~~g~Iv~isS~~~~~~~~----------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI 220 (291)
T 1e7w_A 163 HRVAGTPAKHRGTNYSIINMVDAMTNQPLL----------------------GYTIYTMAKGALEGLTRSAALELAPLQI 220 (291)
T ss_dssp HHHHTSCGGGSCSCEEEEEECCTTTTSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred HHHHhcCCCCCCCCcEEEEEechhhcCCCC----------------------CCchhHHHHHHHHHHHHHHHHHHHhcCe
Confidence 42 13 47899999976544211 13559999999999999998864 89
Q ss_pred cEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc-cceeHHHHHHHHHHhhcCC--CCCCcEEEe
Q 020266 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF-GWVNVKDVANAHIQAFEVP--SANGRYCLV 256 (328)
Q Consensus 188 ~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~D~a~~~~~~~~~~--~~~g~~~~~ 256 (328)
++++|+||.+..+. . .. ...........| .. .+.+++|+|+++++++... ...|.+...
T Consensus 221 ~vn~v~PG~v~T~~-~--~~--~~~~~~~~~~~p-----~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~v 282 (291)
T 1e7w_A 221 RVNGVGPGLSVLVD-D--MP--PAVWEGHRSKVP-----LYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKV 282 (291)
T ss_dssp EEEEEEESSBCCGG-G--SC--HHHHHHHHTTCT-----TTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred EEEEEeeCCccCCc-c--CC--HHHHHHHHhhCC-----CCCCCCCHHHHHHHHHHHhCCcccCccCcEEEE
Confidence 99999999998775 2 11 222233332222 11 4779999999999998743 235644333
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-25 Score=187.02 Aligned_cols=222 Identities=14% Similarity=0.069 Sum_probs=146.6
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC----ccE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG----CDG 84 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~d~ 84 (328)
||+|+||||+|+||+++++.|+++|++|++++|+.++... .+.+|++|++++.++++. +|+
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---------------~~~~Dl~~~~~v~~~~~~~~~~id~ 65 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---------------DLSTAEGRKQAIADVLAKCSKGMDG 65 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHHHHHHHHHTTCTTCCSE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---------------ccccCCCCHHHHHHHHHHhCCCCCE
Confidence 4789999999999999999999999999999998755321 156899999988888764 599
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCC--------
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW-------- 153 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~-------- 153 (328)
||||||.... ..+++..+++|+.++.++++++.+. .+.++||++||.+++.++..+......+.+.+
T Consensus 66 lv~~Ag~~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (257)
T 1fjh_A 66 LVLCAGLGPQ--TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIV 143 (257)
T ss_dssp EEECCCCCTT--CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHH
T ss_pred EEECCCCCCC--cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhh
Confidence 9999997542 2346789999999999999988642 24579999999876532111111111111111
Q ss_pred ---CCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 154 ---FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 154 ---~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
.+.+ ....|+.||.+.+.+++.++.+ .|+++++++||.+.++....... .......... +....
T Consensus 144 ~~~~~~~-----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~---~~~~~ 213 (257)
T 1fjh_A 144 EHAGEQG-----GNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ--DPRYGESIAK---FVPPM 213 (257)
T ss_dssp HTCCTTH-----HHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC--------------------------CCCST
T ss_pred hcccCCC-----CccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhcc--chhHHHHHHh---ccccc
Confidence 1111 2356999999999999998876 58999999999999885332100 0011111110 01112
Q ss_pred ccceeHHHHHHHHHHhhcCC--CCCCc-EEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVP--SANGR-YCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~--~~~g~-~~~~~ 257 (328)
..+.+++|+|++++.++..+ ...|. +++.+
T Consensus 214 ~~~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdg 246 (257)
T 1fjh_A 214 GRRAEPSEMASVIAFLMSPAASYVHGAQIVIDG 246 (257)
T ss_dssp TSCCCTHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred CCCCCHHHHHHHHHHHhCchhcCCcCCEEEECC
Confidence 34789999999999999764 33564 45544
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=181.27 Aligned_cols=203 Identities=17% Similarity=0.171 Sum_probs=153.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
+||+++||||+|+||++++++|+++|++|++++|+.++...+...+... ...++.++.+|++|++++.++++
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQE-QGVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-cCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 3789999999999999999999999999999999876655543333211 13578999999999999888876
Q ss_pred CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 81 GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 81 ~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
++|+||||||..... ..+.+...+++|+.++.++++++.+.. +.+++|++||.....+.+
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~------------- 146 (235)
T 3l77_A 80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLIP------------- 146 (235)
T ss_dssp SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCCT-------------
T ss_pred CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccCC-------------
Confidence 689999999974321 234456789999999999999886531 235788888865544211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh-cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcccee
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (328)
....|+.+|.+.+.+++.+..+ .++++++++||.+.++....... ......+++
T Consensus 147 ---------~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~~----------------~~~~~~~~~ 201 (235)
T 3l77_A 147 ---------YGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKPG----------------KPKEKGYLK 201 (235)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCSC----------------CCGGGTCBC
T ss_pred ---------CcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccCC----------------cccccCCCC
Confidence 1245999999999999998655 48999999999998864322110 011125789
Q ss_pred HHHHHHHHHHhhcCCCC
Q 020266 233 VKDVANAHIQAFEVPSA 249 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~~ 249 (328)
++|+|+++++++..+..
T Consensus 202 p~dva~~v~~l~~~~~~ 218 (235)
T 3l77_A 202 PDEIAEAVRCLLKLPKD 218 (235)
T ss_dssp HHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 99999999999987654
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=178.66 Aligned_cols=228 Identities=18% Similarity=0.135 Sum_probs=164.0
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|....++++|+++||||++.||+++++.|+++|++|++.+|+..+ ......... ..++..+++|++|+++++++++
T Consensus 1 M~n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~--~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~ 76 (247)
T 4hp8_A 1 MKNPFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPD--ETLDIIAKD--GGNASALLIDFADPLAAKDSFT 76 (247)
T ss_dssp --CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHT--TCCEEEEECCTTSTTTTTTSST
T ss_pred CcCCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHH--HHHHHHHHh--CCcEEEEEccCCCHHHHHHHHH
Confidence 444446789999999999999999999999999999999997542 222222222 3578899999999999888876
Q ss_pred --CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|++|||||... +...+.|+..+++|+.|+.++.+++.+. ++.+++|++||.++..+.+
T Consensus 77 ~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~--------- 147 (247)
T 4hp8_A 77 DAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGI--------- 147 (247)
T ss_dssp TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCS---------
T ss_pred hCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCC---------
Confidence 6899999999632 2335567889999999999999876543 2346899999987655321
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.||.....+.+.++.++ |+++..|-||.+-.|..... .........+....|
T Consensus 148 -------------~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~-~~~~~~~~~~~~~~P----- 208 (247)
T 4hp8_A 148 -------------RVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEAL-RADAARNKAILERIP----- 208 (247)
T ss_dssp -------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-HTSHHHHHHHHTTCT-----
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhc-ccCHHHHHHHHhCCC-----
Confidence 12459999999999999998874 89999999999988742110 001122222333222
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCCcEEEecCcc
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~ 260 (328)
...+..++|+|.++++++.... ..|....+++.+
T Consensus 209 lgR~g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG~ 244 (247)
T 4hp8_A 209 AGRWGHSEDIAGAAVFLSSAAADYVHGAILNVDGGW 244 (247)
T ss_dssp TSSCBCTHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECccc
Confidence 2346789999999999987532 366554444433
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=183.48 Aligned_cols=203 Identities=13% Similarity=0.164 Sum_probs=144.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Cc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 82 (328)
|+++||||+|+||+++++.|+++|++|++++|+.++...+...+ ..++.++.+|++|++++.++++ ++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 75 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWCNI 75 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHTSCTTTCCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 57999999999999999999999999999999865544433222 1468899999999999888775 68
Q ss_pred cEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|+||||||... ....+.+...+++|+.|+.++++++.+. .+.++||++||.++..+.+
T Consensus 76 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~------------- 142 (248)
T 3asu_A 76 DILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYA------------- 142 (248)
T ss_dssp CEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT-------------
T ss_pred CEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCCC-------------
Confidence 99999999642 1223345678999999999999987642 1457999999976544211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCccc-CCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVI-GPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+. .+................. ....
T Consensus 143 ---------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~~~~--------~~~~ 205 (248)
T 3asu_A 143 ---------GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTY--------QNTV 205 (248)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC------------------------------C
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCchHHHHHHH--------hccC
Confidence 12459999999999999998864 8999999999999 4532110000000000000 0112
Q ss_pred ceeHHHHHHHHHHhhcCC
Q 020266 230 WVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~ 247 (328)
+++++|+|+++++++..+
T Consensus 206 ~~~p~dvA~~v~~l~s~~ 223 (248)
T 3asu_A 206 ALTPEDVSEAVWWVSTLP 223 (248)
T ss_dssp CBCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhcCC
Confidence 469999999999999864
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=184.65 Aligned_cols=216 Identities=19% Similarity=0.159 Sum_probs=154.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+|+++||||+|+||++++++|+++| +.|++.+|+.+....+.... ..++.++.+|++|++++.++++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY-----GDRFFYVVGDITEDSVLKQLVNAAVKGH 76 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH-----GGGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh-----CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999999985 78888999866554443332 2478999999999998888775
Q ss_pred -CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++|||||.... ...+.+...+++|+.|+.++++++.+.. + +++|++||.++..+.+
T Consensus 77 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~~~---------- 145 (254)
T 3kzv_A 77 GKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMYFS---------- 145 (254)
T ss_dssp SCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCSSC----------
T ss_pred CCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccCCC----------
Confidence 68999999997422 1233456789999999999999884321 3 6899999976544211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc-CccEEEEcCCcccCCCCCCCCc------chHHHHHHHHhCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTLN------TSAAAVLSLIKGAQTY 223 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~------~~~~~~~~~~~~~~~~ 223 (328)
....|+.||.+.+.+++.++.+. ++++++++||.+.++....... .............
T Consensus 146 ------------~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 210 (254)
T 3kzv_A 146 ------------SWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLK--- 210 (254)
T ss_dssp ------------CSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHH---
T ss_pred ------------CcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHH---
Confidence 23569999999999999999885 8999999999999985432211 0122222222211
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC---CCCcE-EEec
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPS---ANGRY-CLVE 257 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~---~~g~~-~~~~ 257 (328)
....+.+++|+|+++++++.... ..|.+ ++.+
T Consensus 211 --~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg 246 (254)
T 3kzv_A 211 --ENNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYND 246 (254)
T ss_dssp --TTC----CHHHHHHHHHHHHHCCCGGGTTCEEETTC
T ss_pred --hcCCcCCcccHHHHHHHHHhhcccCCCCccEEEecC
Confidence 12348899999999999987553 46644 4433
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-24 Score=184.94 Aligned_cols=218 Identities=17% Similarity=0.149 Sum_probs=156.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCC----cCchHHhhC
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLE----EGSFDSIVD 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~----~~~~~~~~~ 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+. ++...+...+... ...++.++.+|++| ++++.++++
T Consensus 20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~~~~~~~~~v~~~~~ 98 (288)
T 2x9g_A 20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKE-RSNTAVVCQADLTNSNVLPASCEEIIN 98 (288)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhh-cCCceEEEEeecCCccCCHHHHHHHHH
Confidence 45688999999999999999999999999999999987 5444433332211 13578999999999 777776665
Q ss_pred -------CccEEEEccCCCCCC---------------CCCcchhhhhHHHHHHHHHHHHHhcCC---C------ccEEEE
Q 020266 81 -------GCDGVCHTASPFYHD---------------AKDPQVELLDPAVKGTLNVLNSCAKFP---S------IKRVVL 129 (328)
Q Consensus 81 -------~~d~vih~a~~~~~~---------------~~~~~~~~~~~N~~~~~~l~~~~~~~~---~------~~~~v~ 129 (328)
++|+||||||..... ..+.+...+++|+.++.++++++.+.. + .++||+
T Consensus 99 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~ 178 (288)
T 2x9g_A 99 SCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVN 178 (288)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEE
Confidence 789999999974321 112344678899999999999886542 2 468999
Q ss_pred ecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC
Q 020266 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL 206 (328)
Q Consensus 130 ~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~ 206 (328)
+||.++..+.+ ....|+.||.+.+.+++.++.+. |+++++|+||.+.+|. . ..
T Consensus 179 isS~~~~~~~~----------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~~ 234 (288)
T 2x9g_A 179 LCDAMVDQPCM----------------------AFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-MG 234 (288)
T ss_dssp ECCTTTTSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-SC
T ss_pred EecccccCCCC----------------------CCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-cC
Confidence 99976544210 13559999999999999998874 8999999999999986 3 11
Q ss_pred cchHHHHHHHHhCCCCCCCCCccc-eeHHHHHHHHHHhhcCC--CCCCcEEEe
Q 020266 207 NTSAAAVLSLIKGAQTYPNVTFGW-VNVKDVANAHIQAFEVP--SANGRYCLV 256 (328)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~-v~v~D~a~~~~~~~~~~--~~~g~~~~~ 256 (328)
...........+ ...+ .+++|+|+++++++... ...|.+...
T Consensus 235 ---~~~~~~~~~~~p-----~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~v 279 (288)
T 2x9g_A 235 ---EEEKDKWRRKVP-----LGRREASAEQIADAVIFLVSGSAQYITGSIIKV 279 (288)
T ss_dssp ---HHHHHHHHHTCT-----TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred ---hHHHHHHHhhCC-----CCCCCCCHHHHHHHHHHHhCccccCccCCEEEE
Confidence 122233333222 1234 79999999999998753 235644333
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-24 Score=182.37 Aligned_cols=205 Identities=16% Similarity=0.192 Sum_probs=155.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCC---CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
.+++|+|+||||+|+||++++++|+++| ++|++++|+.+....+..+... ..++.++.+|++|++++.++++
T Consensus 18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~ 94 (267)
T 1sny_A 18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN---HSNIHILEIDLRNFDAYDKLVADI 94 (267)
T ss_dssp --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH---CTTEEEEECCTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhcc---CCceEEEEecCCChHHHHHHHHHH
Confidence 4568999999999999999999999999 9999999988765544333221 2478999999999999888876
Q ss_pred -------CccEEEEccCCCC-C-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---------C-----ccEEEEecch
Q 020266 81 -------GCDGVCHTASPFY-H-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---------S-----IKRVVLTSSM 133 (328)
Q Consensus 81 -------~~d~vih~a~~~~-~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~-----~~~~v~~SS~ 133 (328)
++|+||||||... . ...+.+...+++|+.++.++++++.+.. + .++||++||.
T Consensus 95 ~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 174 (267)
T 1sny_A 95 EGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 174 (267)
T ss_dssp HHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred HHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence 6999999999744 1 1223455688999999999999886531 1 4689999997
Q ss_pred hhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchH
Q 020266 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSA 210 (328)
Q Consensus 134 ~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~ 210 (328)
+++.+.. +. .+...|+.+|.+.+.+++.++.+ .+++++++|||.+.++....
T Consensus 175 ~~~~~~~--------------~~-----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------ 229 (267)
T 1sny_A 175 LGSIQGN--------------TD-----GGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS------ 229 (267)
T ss_dssp GGCSTTC--------------CS-----CCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT------
T ss_pred cccccCC--------------CC-----CCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC------
Confidence 6554211 00 01245999999999999998877 58999999999998764321
Q ss_pred HHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEE
Q 020266 211 AAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCL 255 (328)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~ 255 (328)
..++.++|+|+.++.++... ...|.|..
T Consensus 230 -----------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~ 259 (267)
T 1sny_A 230 -----------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVN 259 (267)
T ss_dssp -----------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEEC
T ss_pred -----------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEc
Confidence 12578999999999998753 23565543
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=177.96 Aligned_cols=226 Identities=18% Similarity=0.179 Sum_probs=163.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||++.||+++++.|+++|.+|++.+|+.++.......... ..++.++.+|++|+++++++++
T Consensus 4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~v~~~~~~ 80 (258)
T 4gkb_A 4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQR---QPRATYLPVELQDDAQCRDAVAQTIAT 80 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhc---CCCEEEEEeecCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999988765443332222 3578899999999998877665
Q ss_pred --CccEEEEccCCCC----CCCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 --GCDGVCHTASPFY----HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~~----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|++|||||... +...+.|...+++|+.++.++.+++.+.+ +.+++|++||+++..+.+
T Consensus 81 ~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~------------ 148 (258)
T 4gkb_A 81 FGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQG------------ 148 (258)
T ss_dssp HSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCCS------------
T ss_pred hCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCCC------------
Confidence 6899999999632 22344577889999999999998876542 236899999987766322
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcc---hHHHHHHHHhCCCCCCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT---SAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.||.+...+.+.++.+. |+++.+|.||.|..|........ ............|.
T Consensus 149 ----------~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---- 214 (258)
T 4gkb_A 149 ----------NTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL---- 214 (258)
T ss_dssp ----------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT----
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC----
Confidence 12559999999999999998864 89999999999988754321110 11122233332221
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCCcEEEecCcc
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~ 260 (328)
.+.+..++|+|.++++++.... ..|....+++.+
T Consensus 215 g~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 215 GRRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGGY 250 (258)
T ss_dssp TTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCccCCeEEECCCc
Confidence 1247789999999999986532 367554444433
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=181.23 Aligned_cols=212 Identities=19% Similarity=0.139 Sum_probs=156.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh-------hhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-------TRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.++.+. ........ ..++.++++|++|++++.+++
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~ 84 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVAAAV 84 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHH
Confidence 568999999999999999999999999999999998764322 12222211 357899999999999888877
Q ss_pred C-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCC
Q 020266 80 D-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 80 ~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
+ ++|++|||||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||.+...+..
T Consensus 85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~---- 160 (285)
T 3sc4_A 85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKW---- 160 (285)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGG----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCC----
Confidence 6 78999999997432 2233456788899999999999887752 346999999975443210
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCc-ccCCCCCCCCcchHHHHHHHHhCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAM-VIGPLLQPTLNTSAAAVLSLIKGA 220 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~-v~G~~~~~~~~~~~~~~~~~~~~~ 220 (328)
.....|+.||.+.+.+++.++.+ .|+++++++||. +-.+ +........
T Consensus 161 -----------------~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~-----------~~~~~~~~~ 212 (285)
T 3sc4_A 161 -----------------LRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA-----------AVQNLLGGD 212 (285)
T ss_dssp -----------------SCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCH-----------HHHHHHTSC
T ss_pred -----------------CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccH-----------HHHhhcccc
Confidence 01255999999999999999887 489999999984 3322 223333322
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC-CCCcEEEe
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS-ANGRYCLV 256 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~-~~g~~~~~ 256 (328)
. ....+..++|+|+++++++..+. ..|.....
T Consensus 213 ~----~~~r~~~pedvA~~~~~l~s~~~~~tG~~i~~ 245 (285)
T 3sc4_A 213 E----AMARSRKPEVYADAAYVVLNKPSSYTGNTLLC 245 (285)
T ss_dssp C----CCTTCBCTHHHHHHHHHHHTSCTTCCSCEEEH
T ss_pred c----cccCCCCHHHHHHHHHHHhCCcccccceEEEE
Confidence 1 22357799999999999998753 35544443
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-24 Score=180.86 Aligned_cols=222 Identities=17% Similarity=0.111 Sum_probs=159.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEe-cCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
++++|+++||||+|+||+++++.|+++|++|+++. |+.+........+.. ...++.++.+|++|.++++++++
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS--NGGSAFSIGANLESLHGVEALYSSLDN 81 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHH--TTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHh--cCCceEEEecCcCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999998875 444444433333222 23578899999999988777664
Q ss_pred ---------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCC
Q 020266 81 ---------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 ---------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
.+|+||||||.... ...+.+...+++|+.++.++++++.+.. +.+++|++||.++..+.+
T Consensus 82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----- 156 (255)
T 3icc_A 82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLP----- 156 (255)
T ss_dssp HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCCT-----
T ss_pred HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCCC-----
Confidence 28999999997432 2233445778999999999999998762 335899999976654211
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++....... . ..........
T Consensus 157 -----------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~-~~~~~~~~~~-- 215 (255)
T 3icc_A 157 -----------------DFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLS-D-PMMKQYATTI-- 215 (255)
T ss_dssp -----------------TBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTT-S-HHHHHHHHHT--
T ss_pred -----------------CcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcc-c-HHHHHhhhcc--
Confidence 12559999999999999998874 8999999999999886433221 1 1112222211
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
.....+.+++|+|+++++++... ...| .+++.+
T Consensus 216 --~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdg 251 (255)
T 3icc_A 216 --SAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSG 251 (255)
T ss_dssp --STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred --CCcCCCCCHHHHHHHHHHHhCcccCCccCCEEEecC
Confidence 12345789999999999988643 2356 455544
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=182.14 Aligned_cols=200 Identities=13% Similarity=0.079 Sum_probs=149.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
++|+++||||+|+||++++++|+++|++|++++|+.++.. ....++.+|++|++++.++++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 73 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKLLG 73 (241)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------------CCcEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999999876532 135678899999988877665
Q ss_pred --CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 --GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 --~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. ..++||++||.+++.+.+
T Consensus 74 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 142 (241)
T 1dhr_A 74 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP----------- 142 (241)
T ss_dssp TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-----------
T ss_pred CCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCC-----------
Confidence 68999999996432 1123345778899999999999987742 135899999976554211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc-----CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|.+.+.+++.++.+. |+++++++||.+-++.. ...... ..
T Consensus 143 -----------~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~-----------~~~~~~-----~~ 195 (241)
T 1dhr_A 143 -----------GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMN-----------RKSMPE-----AD 195 (241)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHH-----------HHHSTT-----SC
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCccc-----------cccCcc-----hh
Confidence 12459999999999999998764 59999999998876521 111111 11
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+++++|+|++++.++.... ..| .+.+.+
T Consensus 196 ~~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g 229 (241)
T 1dhr_A 196 FSSWTPLEFLVETFHDWITGNKRPNSGSLIQVVT 229 (241)
T ss_dssp GGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEEE
T ss_pred hccCCCHHHHHHHHHHHhcCCCcCccceEEEEeC
Confidence 2346889999999999987543 245 445543
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=184.51 Aligned_cols=208 Identities=13% Similarity=0.128 Sum_probs=145.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG---- 81 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 81 (328)
.|+ |+++||||+|+||++++++|+++|++|++++|+.++...+...+.. ..++.++.+|++|++++.++++.
T Consensus 19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 94 (272)
T 2nwq_A 19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSA---KTRVLPLTLDVRDRAAMSAAVDNLPEE 94 (272)
T ss_dssp --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTT---TSCEEEEECCTTCHHHHHHHHHTCCGG
T ss_pred CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc---CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 344 8999999999999999999999999999999986554443332211 14788999999999998887763
Q ss_pred ---ccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC---Ccc-EEEEecchhhhccCCCCCCCCcc
Q 020266 82 ---CDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIK-RVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 82 ---~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~-~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
+|+||||||.... ...+.+...+++|+.|+.++++++.+.. +.+ +||++||.++..+.+
T Consensus 95 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~~-------- 166 (272)
T 2nwq_A 95 FATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYP-------- 166 (272)
T ss_dssp GSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCCT--------
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCCC--------
Confidence 5999999997432 1233456789999999988888775421 346 999999976554211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+++.++.+ .|+++++|+||.+.++..................
T Consensus 167 --------------~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~------- 225 (272)
T 2nwq_A 167 --------------GSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYA------- 225 (272)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC---------------------------
T ss_pred --------------CCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccchHHHHHhhc-------
Confidence 1245999999999999999876 4799999999999887532110000000000011
Q ss_pred CCccceeHHHHHHHHHHhhcCC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...++.++|+|+++++++..+
T Consensus 226 -~~~~~~pedvA~~v~~l~s~~ 246 (272)
T 2nwq_A 226 -GAHPIQPEDIAETIFWIMNQP 246 (272)
T ss_dssp -CCCCBCHHHHHHHHHHHHTSC
T ss_pred -cCCCCCHHHHHHHHHHHhCCC
Confidence 112579999999999999864
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=177.47 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=165.5
Q ss_pred cccCCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-
Q 020266 4 VAAAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
|.++++|+++||||+| .||+++++.|+++|++|++.+|+.+..+.+........ ..++.++++|++|++++.++++
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHH
Confidence 4456799999999887 89999999999999999999999877766666554432 3578899999999998877665
Q ss_pred ------CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcC-CCccEEEEecchhhhccCCCCCC
Q 020266 81 ------GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 ------~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
++|++|||||.... ...+.+...+++|+.++..+.+++... .+.+++|++||.++..+.+
T Consensus 80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~~---- 155 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQ---- 155 (256)
T ss_dssp HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCCT----
T ss_pred HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCcc----
Confidence 68999999986321 112233456788999998888887765 2346899999987655311
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
....|+.||.+.+.+.+.++.+. |+++++|.||.+-.|..... .........+....|
T Consensus 156 ------------------~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~-~~~~~~~~~~~~~~P 216 (256)
T 4fs3_A 156 ------------------NYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGV-GGFNTILKEIKERAP 216 (256)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC-TTHHHHHHHHHHHST
T ss_pred ------------------cchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhc-cCCHHHHHHHHhcCC
Confidence 23559999999999999998874 89999999999988754322 122334444444322
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEecC
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVER 258 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~ 258 (328)
...+..++|+|.++++++... ...|....+++
T Consensus 217 -----l~R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDG 250 (256)
T 4fs3_A 217 -----LKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDS 250 (256)
T ss_dssp -----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -----CCCCcCHHHHHHHHHHHhCchhcCccCCEEEECc
Confidence 223678999999999998653 23675544443
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-24 Score=179.43 Aligned_cols=209 Identities=12% Similarity=0.063 Sum_probs=148.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Cc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 82 (328)
.+++|+|+||||+|+||+++++.|+++|++|++++|+.+.. ... ..+.++ +|+ .+++.++++ ++
T Consensus 16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~---~~~-------~~~~~~-~D~--~~~~~~~~~~~~~i 82 (249)
T 1o5i_A 16 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL---KRS-------GHRYVV-CDL--RKDLDLLFEKVKEV 82 (249)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHT-------CSEEEE-CCT--TTCHHHHHHHSCCC
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH---Hhh-------CCeEEE-eeH--HHHHHHHHHHhcCC
Confidence 45689999999999999999999999999999999986221 111 246667 999 455665554 79
Q ss_pred cEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|+||||||.... ...+.+...+++|+.++.++++++. +. +.++||++||.+++.+.+
T Consensus 83 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~------------- 148 (249)
T 1o5i_A 83 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAITSFSVISPIE------------- 148 (249)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCT-------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcchHhcCCCC-------------
Confidence 999999996432 1233456788999999887766553 33 557999999976554210
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHH-HHHhCCCCCCCCCcc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVL-SLIKGAQTYPNVTFG 229 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 229 (328)
....|+.+|.+.+.+++.++.+ +|+++++++||.+.++...... ..... ......+ ...
T Consensus 149 ---------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~p-----~~~ 211 (249)
T 1o5i_A 149 ---------NLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELL---SEEKKKQVESQIP-----MRR 211 (249)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHS---CHHHHHHHHTTST-----TSS
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccc---hhhHHHHHHhcCC-----CCC
Confidence 1245999999999999998876 5899999999999998532100 01112 2222211 245
Q ss_pred ceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 230 WVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
+++++|+|+++++++.... ..| .+++.++
T Consensus 212 ~~~~~dvA~~i~~l~s~~~~~~tG~~~~vdgG 243 (249)
T 1o5i_A 212 MAKPEEIASVVAFLCSEKASYLTGQTIVVDGG 243 (249)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 8899999999999987532 346 5566543
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-24 Score=184.02 Aligned_cols=224 Identities=16% Similarity=0.096 Sum_probs=160.7
Q ss_pred ccCCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCCCCh-hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-
Q 020266 5 AAAAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
..+++|+++||||+ |+||++++++|+++|++|++++|+..+. ......+... ...++.++.+|++|++++.++++
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKT-YGIKAKAYKCQVDSYESCEKLVKD 94 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHH-HCCCEECCBCCTTCHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHh-cCCceeEEecCCCCHHHHHHHHHH
Confidence 34578999999999 9999999999999999999999977654 2222222111 13578999999999998887765
Q ss_pred ------CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCC
Q 020266 81 ------GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ------~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|+||||||..... ..+.+...+++|+.++.++++++.+. .+.+++|++||.++..+...
T Consensus 95 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 169 (267)
T 3gdg_A 95 VVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFP----- 169 (267)
T ss_dssp HHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSS-----
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCC-----
Confidence 579999999974321 23345678999999999999988432 14568999999776553110
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcC--ccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS--IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
.....|+.||.+.+.+++.++.+++ ++++++.||.+..+..... ...........
T Consensus 170 ---------------~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~----- 226 (267)
T 3gdg_A 170 ---------------QEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV---PKETQQLWHSM----- 226 (267)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS---CHHHHHHHHTT-----
T ss_pred ---------------CCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC---CHHHHHHHHhc-----
Confidence 0124599999999999999998864 7999999999988753221 11222222222
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
.....+.+++|+|+++++++.... ..| .+++.+
T Consensus 227 ~~~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdg 262 (267)
T 3gdg_A 227 IPMGRDGLAKELKGAYVYFASDASTYTTGADLLIDG 262 (267)
T ss_dssp STTSSCEETHHHHHHHHHHHSTTCTTCCSCEEEEST
T ss_pred CCCCCCcCHHHHHhHhheeecCccccccCCEEEECC
Confidence 123458899999999999987532 356 445443
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=179.62 Aligned_cols=219 Identities=15% Similarity=0.096 Sum_probs=156.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.+....+.... ..++.++.+|++|++++.++++
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVGDVRSLQDQKRAAERCLAAF 77 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----BTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc-----CCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999999866554433321 3578999999999988777665
Q ss_pred -CccEEEEccCCCCCCC------C----CcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 -GCDGVCHTASPFYHDA------K----DPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 -~~d~vih~a~~~~~~~------~----~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|++|||||...... . +.+...+++|+.++.++++++.+.. ..+++|++||.++..+.+
T Consensus 78 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 150 (281)
T 3zv4_A 78 GKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNG------- 150 (281)
T ss_dssp SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSSS-------
T ss_pred CCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCCC-------
Confidence 6799999999742211 1 1255678899999999999886641 225899999976655211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchH-------HHHHHHHh
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSA-------AAVLSLIK 218 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~-------~~~~~~~~ 218 (328)
....|+.||.+.+.+++.++.+. +++++++.||.+.++.......... ........
T Consensus 151 ---------------~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (281)
T 3zv4_A 151 ---------------GGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKS 215 (281)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHH
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHh
Confidence 12459999999999999999875 3999999999998874322110000 01111222
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC---CCCc-EEEec
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS---ANGR-YCLVE 257 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~---~~g~-~~~~~ 257 (328)
.. ....+..++|+|.++++++.++. ..|. +++.+
T Consensus 216 ~~-----p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdG 253 (281)
T 3zv4_A 216 VL-----PIGRMPALEEYTGAYVFFATRGDSLPATGALLNYDG 253 (281)
T ss_dssp TC-----TTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESS
T ss_pred cC-----CCCCCCCHHHHHHHHHHhhcccccccccCcEEEECC
Confidence 11 23347899999999999998332 3664 44443
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=183.91 Aligned_cols=208 Identities=21% Similarity=0.121 Sum_probs=136.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcC---chHHhh---C
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG---SFDSIV---D 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~---~ 80 (328)
+++|+++||||+|+||+++++.|++ |+.|++++|+.+....+.. ..++.++.+|+++.+ .+.+.+ .
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE-------IEGVEPIESDIVKEVLEEGGVDKLKNLD 74 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT-------STTEEEEECCHHHHHHTSSSCGGGTTCS
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh-------hcCCcceecccchHHHHHHHHHHHHhcC
Confidence 4578999999999999999999987 9999999997655443322 246889999998763 222222 3
Q ss_pred CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 81 GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 81 ~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
++|+||||||..... ..+.+...+++|+.++.++++++.+.. ..+++|++||.+++.+.+
T Consensus 75 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 141 (245)
T 3e9n_A 75 HVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNGPHP------------- 141 (245)
T ss_dssp CCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC----------------------
T ss_pred CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccccCCC-------------
Confidence 689999999974322 223355778999999999888875431 126899999976554211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
....|+.||.+.+.+++.++.+ .|+++++++||.+.++...... ..... ......+
T Consensus 142 ---------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-------~~~~~-----~~~~~~~ 200 (245)
T 3e9n_A 142 ---------GNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLM-------DSQGT-----NFRPEIY 200 (245)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------CCGGG
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhh-------hhhhc-----ccccccC
Confidence 1255999999999999999886 4899999999999987532211 00001 0112458
Q ss_pred eeHHHHHHHHHHhhcCCCCCCcEEEe
Q 020266 231 VNVKDVANAHIQAFEVPSANGRYCLV 256 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~~~g~~~~~ 256 (328)
++++|+|++++.++..+....+||+.
T Consensus 201 ~~p~dvA~~i~~l~~~~~~~~~~~i~ 226 (245)
T 3e9n_A 201 IEPKEIANAIRFVIDAGETTQITNVD 226 (245)
T ss_dssp SCHHHHHHHHHHHHTSCTTEEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCccceeeeE
Confidence 89999999999999987655577764
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-23 Score=182.54 Aligned_cols=215 Identities=16% Similarity=0.195 Sum_probs=155.8
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh-------hhhhhhccCCCCcEEEEEccCCCcCchH
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-------TRHLLALDGASERLQLFKANLLEEGSFD 76 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 76 (328)
+..+++|+||||||+|+||+++++.|+++|++|++++|+.++... ....+.. ...++.++.+|++|++++.
T Consensus 40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~--~g~~~~~~~~Dv~d~~~v~ 117 (346)
T 3kvo_A 40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEA--VGGKALPCIVDVRDEQQIS 117 (346)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHH--TTCEEEEEECCTTCHHHHH
T ss_pred CCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHH
Confidence 345678999999999999999999999999999999998765322 1222211 2357889999999999888
Q ss_pred HhhC-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCC
Q 020266 77 SIVD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGK 141 (328)
Q Consensus 77 ~~~~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~ 141 (328)
++++ ++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||...+.+..
T Consensus 118 ~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~- 196 (346)
T 3kvo_A 118 AAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVW- 196 (346)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGG-
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCC-
Confidence 8776 78999999997432 223345678999999999999988543 1457999999976443210
Q ss_pred CCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhC
Q 020266 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG 219 (328)
Q Consensus 142 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~ 219 (328)
......|+.+|.+.+.+++.++.++ ++++++|.||.+.... +.. ...+
T Consensus 197 -------------------~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~----------~~~-~~~~ 246 (346)
T 3kvo_A 197 -------------------FKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTA----------AMD-MLGG 246 (346)
T ss_dssp -------------------TSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCH----------HHH-HHCC
T ss_pred -------------------CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccH----------HHH-hhcc
Confidence 0023569999999999999999885 7999999999533221 111 1222
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC-CCCcEEE
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS-ANGRYCL 255 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~~-~~g~~~~ 255 (328)
. .....+..++|+|+++++++.... ..|.+.+
T Consensus 247 ~----~~~~r~~~pedvA~~v~~L~s~~~~itG~~iv 279 (346)
T 3kvo_A 247 P----GIESQCRKVDIIADAAYSIFQKPKSFTGNFVI 279 (346)
T ss_dssp ------CGGGCBCTHHHHHHHHHHHTSCTTCCSCEEE
T ss_pred c----cccccCCCHHHHHHHHHHHHhcCCCCCceEEE
Confidence 1 123347789999999999998732 3666553
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=178.38 Aligned_cols=202 Identities=16% Similarity=0.149 Sum_probs=150.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccC--CCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL--LEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~~~~~~~~--- 80 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+..+...+...+.... ..+..++.+|+ ++.+++.++++
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~d~d~~~~~~~~~~~~~~~ 89 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-QPQPLIIALNLENATAQQYRELAARVE 89 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-SCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-CCCceEEEeccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999998776655544443322 24567777777 88877776664
Q ss_pred ----CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ----~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||..+..+.+
T Consensus 90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------- 162 (247)
T 3i1j_A 90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRA------- 162 (247)
T ss_dssp HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCT-------
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCC-------
Confidence 78999999997421 123445678999999999999988432 1457899999976554211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.+|.+.+.+++.++.+ .++++++++||.+.++. .......
T Consensus 163 ---------------~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~-----------~~~~~~~---- 212 (247)
T 3i1j_A 163 ---------------NWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM-----------RAQAYPD---- 212 (247)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH-----------HHHHSTT----
T ss_pred ---------------CcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc-----------chhcccc----
Confidence 1345999999999999999886 47899999999886642 1111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcC
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
.....+..++|+|+++++++..
T Consensus 213 -~~~~~~~~p~dva~~~~~l~s~ 234 (247)
T 3i1j_A 213 -ENPLNNPAPEDIMPVYLYLMGP 234 (247)
T ss_dssp -SCGGGSCCGGGGTHHHHHHHSG
T ss_pred -cCccCCCCHHHHHHHHHHHhCc
Confidence 1223467899999999999874
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=178.13 Aligned_cols=217 Identities=17% Similarity=0.116 Sum_probs=154.1
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
+.++++|++|||||++.||+++++.|+++|++|++.+|+..+.. ....++++|+++++++.++++
T Consensus 6 l~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~------------~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (261)
T 4h15_A 6 FLNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGL------------PEELFVEADLTTKEGCAIVAEATR 73 (261)
T ss_dssp CCCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTS------------CTTTEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCC------------CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999765321 123368899999998777665
Q ss_pred ----CccEEEEccCCCC-------CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCC
Q 020266 81 ----GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ----~~d~vih~a~~~~-------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|++|||||... ....+.+...+++|+.++.++.+++.+.+ +.+++|++||++...+.+.
T Consensus 74 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~----- 148 (261)
T 4h15_A 74 QRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPE----- 148 (261)
T ss_dssp HHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-----
T ss_pred HHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCC-----
Confidence 6899999998532 12344567889999999999988776531 4578999999765542110
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCC-----------CcchHHH
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPT-----------LNTSAAA 212 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~-----------~~~~~~~ 212 (328)
....|+.||.+.+.+.+.++.+ +|+++++|.||.+-.|..... .......
T Consensus 149 ----------------~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~ 212 (261)
T 4h15_A 149 ----------------STTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKI 212 (261)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHH
Confidence 1245999999999999999887 489999999999877631100 0000111
Q ss_pred HHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEecC
Q 020266 213 VLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVER 258 (328)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~~ 258 (328)
+...... .....+..++|+|.++++++.... ..| .+.+.++
T Consensus 213 ~~~~~~~-----~PlgR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG 256 (261)
T 4h15_A 213 IMDGLGG-----IPLGRPAKPEEVANLIAFLASDRAASITGAEYTIDGG 256 (261)
T ss_dssp HHHHTTC-----CTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHhcC-----CCCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCc
Confidence 1111111 112347799999999999986432 356 4444443
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=178.38 Aligned_cols=214 Identities=13% Similarity=0.021 Sum_probs=148.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
||+++||||+|+||+++++.|+++|++|++++|+.++...+.. +.... .++..+ |++++.++++ +
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~--~~~~~~-----d~~~v~~~~~~~~~~~g~ 72 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETY--PQLKPM-----SEQEPAELIEAVTSAYGQ 72 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHHC--TTSEEC-----CCCSHHHHHHHHHHHHSC
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhcC--CcEEEE-----CHHHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999999999998776555433 21111 233333 5566655554 7
Q ss_pred ccEEEEccCCC-CC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 82 CDGVCHTASPF-YH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 82 ~d~vih~a~~~-~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
+|+||||||.. .. ...+.+...+++|+.++.++++++.+. .+.++||++||.+++.+.+
T Consensus 73 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 140 (254)
T 1zmt_A 73 VDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWK------------ 140 (254)
T ss_dssp CCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCT------------
T ss_pred CCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCCC------------
Confidence 89999999975 21 123345678999999999999987542 1457999999976554211
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcc-----hHHHHHHHHhCCCCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT-----SAAAVLSLIKGAQTYP 224 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-----~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+++.++.+. |+++++++||.++||........ ............+
T Consensus 141 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p--- 207 (254)
T 1zmt_A 141 ----------ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA--- 207 (254)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS---
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCC---
Confidence 12459999999999999998874 89999999999988864332210 0111111211111
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCC-cEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANG-RYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g-~~~~~~ 257 (328)
...+.+++|+|+++++++.... ..| .+++.+
T Consensus 208 --~~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdg 241 (254)
T 1zmt_A 208 --LQRLGTQKELGELVAFLASGSCDYLTGQVFWLAG 241 (254)
T ss_dssp --SSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEEST
T ss_pred --CCCCcCHHHHHHHHHHHhCcccCCccCCEEEECC
Confidence 2247899999999999987643 256 445544
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=182.91 Aligned_cols=203 Identities=16% Similarity=0.075 Sum_probs=149.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+|+||||+|+||+++++.|+++|++|++++|+.++...+.......+ ..++.++.+|++|++++.++++
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999998765544333322211 2368899999999988877765
Q ss_pred --CccEEEEc-cCCCCCC----CCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 --GCDGVCHT-ASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 --~~d~vih~-a~~~~~~----~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|+|||| |+..... ..+.+...+++|+.|+.++++++.+.. +.++||++||.++..+.+
T Consensus 104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 172 (286)
T 1xu9_A 104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYP----------- 172 (286)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCT-----------
T ss_pred cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCCC-----------
Confidence 78999999 4543221 122345678999999999999886531 236899999976544211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc-----CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
..+.|+.||.+.+.+++.++.+. ++++++++||.+.++.. .....+ ..
T Consensus 173 -----------~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~-----------~~~~~~-----~~ 225 (286)
T 1xu9_A 173 -----------MVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETA-----------MKAVSG-----IV 225 (286)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHH-----------HHHSCG-----GG
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhH-----------HHhccc-----cc
Confidence 13559999999999999987764 89999999999876531 111111 11
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...+++++|+|+.++.++..+
T Consensus 226 ~~~~~~~~~vA~~i~~~~~~~ 246 (286)
T 1xu9_A 226 HMQAAPKEECALEIIKGGALR 246 (286)
T ss_dssp GGGCBCHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhcC
Confidence 234789999999999999865
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-23 Score=177.63 Aligned_cols=214 Identities=16% Similarity=0.131 Sum_probs=146.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+.++...+...+... ..++.++.+|++|++++.++++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL--GGQCVPVVCDSSQESEVRSLFEQVDREQ 80 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--SSEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999865544433332221 2468899999999988776553
Q ss_pred --CccEEEEccCC--C----------CCCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCC
Q 020266 81 --GCDGVCHTASP--F----------YHDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPR 143 (328)
Q Consensus 81 --~~d~vih~a~~--~----------~~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~ 143 (328)
++|+||||||. . .....+.+...+++|+.++.++.+++.+. .+.++||++||.+...+.
T Consensus 81 ~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 156 (260)
T 2qq5_A 81 QGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYM---- 156 (260)
T ss_dssp TTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSCC----
T ss_pred CCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCCC----
Confidence 57999999942 1 12234456678889999998887766432 145799999997644310
Q ss_pred CCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC
Q 020266 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA 220 (328)
Q Consensus 144 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~ 220 (328)
+...|+.||.+.+.+++.++.+ +|+++++++||.+.++...................
T Consensus 157 -------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~- 216 (260)
T 2qq5_A 157 -------------------FNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQ- 216 (260)
T ss_dssp -------------------SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC------------------
T ss_pred -------------------CCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccccchhHHHH-
Confidence 1245999999999999999875 48999999999998875322110000000000000
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCCC
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
.......+..++|+|+++++++..+.
T Consensus 217 --~~~~~~~~~~pe~va~~v~~l~s~~~ 242 (260)
T 2qq5_A 217 --FKSAFSSAETTELSGKCVVALATDPN 242 (260)
T ss_dssp -------CHHHHHHHHHHHHHHHHTCTT
T ss_pred --HHhhhccCCCHHHHHHHHHHHhcCcc
Confidence 00011124689999999999998653
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=179.90 Aligned_cols=214 Identities=16% Similarity=0.092 Sum_probs=151.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHH---CCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLS---RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
.+++|+++||||+|+||+++++.|++ +|++|++++|+.+....+...+.......++.++.+|++|++++.++++
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999 8999999999876554443333222113468899999999988777653
Q ss_pred -------Ccc--EEEEccCCCCC--------CCCCcchhhhhHHHHHHHHHHHHHhcCC-----CccEEEEecchhhhcc
Q 020266 81 -------GCD--GVCHTASPFYH--------DAKDPQVELLDPAVKGTLNVLNSCAKFP-----SIKRVVLTSSMAAVLN 138 (328)
Q Consensus 81 -------~~d--~vih~a~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-----~~~~~v~~SS~~~~~~ 138 (328)
.+| +||||||.... ...+.+...+++|+.|+.++++++.+.+ +.++||++||.+++.+
T Consensus 83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 162 (259)
T 1oaa_A 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQP 162 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSC
T ss_pred HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcCC
Confidence 358 99999997432 2234566789999999999999987652 2367999999765542
Q ss_pred CCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc-CccEEEEcCCcccCCCCCCCCc--chHHHHHH
Q 020266 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-SIDLVTINPAMVIGPLLQPTLN--TSAAAVLS 215 (328)
Q Consensus 139 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~ 215 (328)
.+ ....|+.||.+.+.+++.++.+. +++++++.||.+-.+....... ........
T Consensus 163 ~~----------------------~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~ 220 (259)
T 1oaa_A 163 YK----------------------GWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSK 220 (259)
T ss_dssp CT----------------------TCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHH
T ss_pred CC----------------------CccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChhHHHH
Confidence 11 13559999999999999999886 4999999999886652110000 00011111
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
.....| ...+.+++|+|+++++++..
T Consensus 221 ~~~~~p-----~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 221 LQKLKS-----DGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HHHHHH-----TTCSBCHHHHHHHHHHHHHH
T ss_pred HHHhhh-----cCCcCCHHHHHHHHHHHHhh
Confidence 111001 12478999999999998864
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-23 Score=177.31 Aligned_cols=211 Identities=15% Similarity=0.157 Sum_probs=152.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh-------hhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK-------TRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++.+. ....... ...++.++.+|++|++++.++
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~ 80 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNA--AGGQGLALKCDIREEDQVRAA 80 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHH--HTSEEEEEECCTTCHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHH
Confidence 3568999999999999999999999999999999998764322 1111111 135789999999999988877
Q ss_pred hC-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCC
Q 020266 79 VD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPR 143 (328)
Q Consensus 79 ~~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~ 143 (328)
++ ++|++|||||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||.+...+..
T Consensus 81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~--- 157 (274)
T 3e03_A 81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAW--- 157 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHH---
T ss_pred HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC---
Confidence 65 68999999997432 223445678899999999999987653 1457999999976443200
Q ss_pred CCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCc-ccCCCCCCCCcchHHHHHHHHhC
Q 020266 144 TPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAM-VIGPLLQPTLNTSAAAVLSLIKG 219 (328)
Q Consensus 144 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~-v~G~~~~~~~~~~~~~~~~~~~~ 219 (328)
......|+.||.+.+.+++.++.+. |++++++.||. +-.+.. +...+
T Consensus 158 -----------------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~------------~~~~~ 208 (274)
T 3e03_A 158 -----------------WGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAI------------NMLPG 208 (274)
T ss_dssp -----------------HHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------------------C
T ss_pred -----------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchh------------hhccc
Confidence 0023559999999999999998874 89999999995 444321 11111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEE
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCL 255 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~ 255 (328)
.....+..++|+|+++++++.... ..|.+.+
T Consensus 209 -----~~~~~~~~pedvA~~v~~l~s~~~~~itG~~i~ 241 (274)
T 3e03_A 209 -----VDAAACRRPEIMADAAHAVLTREAAGFHGQFLI 241 (274)
T ss_dssp -----CCGGGSBCTHHHHHHHHHHHTSCCTTCCSCEEE
T ss_pred -----ccccccCCHHHHHHHHHHHhCccccccCCeEEE
Confidence 112337799999999999997643 2565543
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=182.33 Aligned_cols=222 Identities=19% Similarity=0.150 Sum_probs=152.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhcc----CCCCcEEEEEccCCCcCchHHhhCC---
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD----GASERLQLFKANLLEEGSFDSIVDG--- 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~--- 81 (328)
+|+|+||||+|+||++++++|+++|++|+++.|+..+........... ....++.++.+|++|++++.++++.
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 688999999999999999999999999999888655544433322211 1135789999999999999888874
Q ss_pred --ccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 82 --CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 82 --~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
+|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~----------- 150 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLP----------- 150 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCT-----------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCCC-----------
Confidence 8999999986322 123345678999999999999986432 1457999999986654211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcch-----------HHHHHHHH
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTS-----------AAAVLSLI 217 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~-----------~~~~~~~~ 217 (328)
....|+.||.+.+.+++.++.+ +|+++++|+||.|.++......... ...+....
T Consensus 151 -----------~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (327)
T 1jtv_A 151 -----------FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYL 219 (327)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHH
T ss_pred -----------CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHHH
Confidence 1245999999999999999885 5899999999999887532211100 00011111
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCCcEE
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYC 254 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~ 254 (328)
..... + ..+-.++++|+|++++.++..+.....|.
T Consensus 220 ~~~~~-~-~~~~~~~pedvA~~i~~l~~~~~~~~~~~ 254 (327)
T 1jtv_A 220 AHSKQ-V-FREAAQNPEEVAEVFLTALRAPKPTLRYF 254 (327)
T ss_dssp HHHHH-H-HHHHCBCHHHHHHHHHHHHHCSSCCSEEE
T ss_pred HHHHH-h-hhhcCCCHHHHHHHHHHHHcCCCCCeEEE
Confidence 00000 0 00112589999999999998754444454
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.5e-23 Score=178.98 Aligned_cols=219 Identities=16% Similarity=0.140 Sum_probs=150.1
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCc-CchHHhhC---
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVD--- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~--- 80 (328)
.++++|+|+||||+|+||+++++.|+++|++|++++|+..+.......+... ...++.++.+|++|+ +.+.++++
T Consensus 8 ~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~~v~~~~~~~~ 86 (311)
T 3o26_A 8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS-NHENVVFHQLDVTDPIATMSSLADFIK 86 (311)
T ss_dssp ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-TCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEccCCCcHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999999877655543333222 235799999999998 76666554
Q ss_pred ----CccEEEEccCCCCC-----------------------------------CCCCcchhhhhHHHHHHHHHHHHHhcC
Q 020266 81 ----GCDGVCHTASPFYH-----------------------------------DAKDPQVELLDPAVKGTLNVLNSCAKF 121 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----------------------------------~~~~~~~~~~~~N~~~~~~l~~~~~~~ 121 (328)
++|+||||||.... ...+.+...+++|+.|+.++++++.+.
T Consensus 87 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 166 (311)
T 3o26_A 87 THFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPL 166 (311)
T ss_dssp HHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHh
Confidence 79999999997531 112223456899999999999887542
Q ss_pred ---CCccEEEEecchhhhccCCCCC-----------CCC-----------ccccCCCCCCccccccCCchhhhhhHHHHH
Q 020266 122 ---PSIKRVVLTSSMAAVLNTGKPR-----------TPD-----------VVVDETWFSDPEVCKQSELWYPLSKTLAED 176 (328)
Q Consensus 122 ---~~~~~~v~~SS~~~~~~~~~~~-----------~~~-----------~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~ 176 (328)
.+.++||++||.++..+..... ... ....+....... .......|+.||.+.+.
T Consensus 167 l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~SK~a~~~ 245 (311)
T 3o26_A 167 LQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNG-WPSFGAAYTTSKACLNA 245 (311)
T ss_dssp HTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTT-CCSSCHHHHHHHHHHHH
T ss_pred hccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhcccccccc-CcccchhhHHHHHHHHH
Confidence 1457999999987655321000 000 000000000000 00123569999999999
Q ss_pred HHHHHHHhc-CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC
Q 020266 177 AAWKFAKEK-SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 177 ~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
+++.++.++ +++++++.||.|.++..... ....+++.++.++.++..+.
T Consensus 246 ~~~~la~e~~~i~v~~v~PG~v~T~~~~~~-----------------------~~~~~~~~a~~~~~~~~~~~ 295 (311)
T 3o26_A 246 YTRVLANKIPKFQVNCVCPGLVKTEMNYGI-----------------------GNYTAEEGAEHVVRIALFPD 295 (311)
T ss_dssp HHHHHHHHCTTSEEEEECCCSBCSGGGTTC-----------------------CSBCHHHHHHHHHHHHTCCS
T ss_pred HHHHHHhhcCCceEEEecCCceecCCcCCC-----------------------CCCCHHHHHHHHHHHHhCCC
Confidence 999999986 79999999999988742211 12478899999988877553
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-23 Score=177.43 Aligned_cols=220 Identities=11% Similarity=0.063 Sum_probs=153.9
Q ss_pred cCCCCeEEEECC--ccHHHHHHHHHHHHCCCeEEEEecCCCCh-hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 6 AAAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 6 ~~~~~~vlVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
.+++|+++|||| +|+||+++++.|+++|++|++++|+.++. +.+.. .. ..++.++.+|++|++++.++++
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITD---RL--PAKAPLLELDVQNEEHLASLAGRV 78 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHT---TS--SSCCCEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHH---hc--CCCceEEEccCCCHHHHHHHHHHH
Confidence 466899999999 99999999999999999999999976442 22221 11 2467889999999998887776
Q ss_pred --------CccEEEEccCCCCC----------CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCC
Q 020266 81 --------GCDGVCHTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGK 141 (328)
Q Consensus 81 --------~~d~vih~a~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~ 141 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+.. ..++||++||.+. ++.+
T Consensus 79 ~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~-~~~~- 156 (269)
T 2h7i_A 79 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS-RAMP- 156 (269)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-SCCT-
T ss_pred HHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc-cccC-
Confidence 78999999997431 1233455778999999999999998752 2258999999643 2110
Q ss_pred CCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCC-----CCcchH---
Q 020266 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQP-----TLNTSA--- 210 (328)
Q Consensus 142 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~-----~~~~~~--- 210 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++.... ......
T Consensus 157 ---------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 215 (269)
T 2h7i_A 157 ---------------------AYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQI 215 (269)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHH
Confidence 12559999999999999998874 8999999999987762110 000000
Q ss_pred -HHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEec
Q 020266 211 -AAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 211 -~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
..........| - .+.+..++|+|+++++++.... ..|.....+
T Consensus 216 ~~~~~~~~~~~p---~-~rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vd 261 (269)
T 2h7i_A 216 QLLEEGWDQRAP---I-GWNMKDATPVAKTVCALLSDWLPATTGDIIYAD 261 (269)
T ss_dssp HHHHHHHHHHCT---T-CCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEES
T ss_pred HHHHHhhhccCC---c-ccCCCCHHHHHHHHHHHhCchhccCcceEEEec
Confidence 01111112111 1 1136789999999999997532 356444333
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-23 Score=179.17 Aligned_cols=213 Identities=18% Similarity=0.144 Sum_probs=148.0
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecC---------CCChhhhhhhhhccCCCCcEEEEEccCCC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD---------PNDPKKTRHLLALDGASERLQLFKANLLE 71 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~---------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 71 (328)
|.+...+++|+++||||+|+||+++++.|+++|++|++.+|. .++.......+.... . ...+|+++
T Consensus 1 M~~~~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~--~---~~~~D~~~ 75 (319)
T 1gz6_A 1 MASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--G---KAVANYDS 75 (319)
T ss_dssp --CCCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--C---EEEEECCC
T ss_pred CCCCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhC--C---eEEEeCCC
Confidence 555445678999999999999999999999999999997653 222222222221111 1 23579999
Q ss_pred cCchHHhhC-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhh
Q 020266 72 EGSFDSIVD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAV 136 (328)
Q Consensus 72 ~~~~~~~~~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~ 136 (328)
.+++.++++ ++|+||||||.... ...+.++..+++|+.|+.++++++.+. .+.++||++||.+..
T Consensus 76 ~~~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~ 155 (319)
T 1gz6_A 76 VEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGI 155 (319)
T ss_dssp GGGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhc
Confidence 987766543 68999999997432 123345678999999999999887542 145799999998777
Q ss_pred ccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHH
Q 020266 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAV 213 (328)
Q Consensus 137 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~ 213 (328)
++.+ ....|+.||.+.+.+.+.++.+ +|+++++++||.+ .+..... .
T Consensus 156 ~~~~----------------------~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~---~---- 205 (319)
T 1gz6_A 156 YGNF----------------------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETV---M---- 205 (319)
T ss_dssp HCCT----------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGG---S----
T ss_pred cCCC----------------------CCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-ccccccc---C----
Confidence 6421 1245999999999999999887 4899999999986 3321100 0
Q ss_pred HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC-CCC-cEEEecC
Q 020266 214 LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS-ANG-RYCLVER 258 (328)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~-~~g-~~~~~~~ 258 (328)
+.....+++++|+|.++++++..+. ..| .|++.++
T Consensus 206 ----------~~~~~~~~~p~dvA~~~~~l~s~~~~~tG~~~~v~GG 242 (319)
T 1gz6_A 206 ----------PEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAG 242 (319)
T ss_dssp ----------CHHHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred ----------ChhhhccCCHHHHHHHHHHHhCchhhcCCCEEEECCC
Confidence 0011235689999999999987643 245 5555543
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=182.74 Aligned_cols=223 Identities=14% Similarity=0.142 Sum_probs=158.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCe-EEEEecCCCChh---hhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc-
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPK---KTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC- 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~- 82 (328)
.+++||||||+|+||.++++.|+++|++ |++++|+..... .+...+.. ...++.++.+|++|++++.++++.+
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~--~g~~v~~~~~Dv~d~~~v~~~~~~i~ 302 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEA--LGARTTVAACDVTDRESVRELLGGIG 302 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHH--TTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHh--cCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999985 999999765322 22222221 2357899999999999998888754
Q ss_pred -----cEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 83 -----DGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 83 -----d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
|+|||+||..... ..+.+...+++|+.|+.+|.+++... +.++||++||+++++|.+
T Consensus 303 ~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~SS~a~~~g~~------------ 369 (486)
T 2fr1_A 303 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFSSFASAFGAP------------ 369 (486)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTCCT------------
T ss_pred hcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEEEcChHhcCCCC------------
Confidence 9999999975432 23345577889999999999999887 778999999987777432
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcccee
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (328)
....|+.+|...+.+..... ..|+++++|+||.+.+++.... ... ..+......+++
T Consensus 370 ----------g~~~Yaaaka~l~~la~~~~-~~gi~v~~i~pG~~~~~gm~~~------~~~------~~~~~~g~~~i~ 426 (486)
T 2fr1_A 370 ----------GLGGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGMAEG------PVA------DRFRRHGVIEMP 426 (486)
T ss_dssp ----------TCTTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC------------------------CTTTTEECBC
T ss_pred ----------CCHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCeeCCCcccch------hHH------HHHHhcCCCCCC
Confidence 12449999999998887665 4599999999999987642210 000 011122346799
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEecCccCHHHHHHHHHHh
Q 020266 233 VKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIREL 272 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~~~ 272 (328)
++|+++++..++..+.. .+.+.. +.+..+...+...
T Consensus 427 ~e~~a~~l~~~l~~~~~--~~~v~~--~d~~~~~~~~~~~ 462 (486)
T 2fr1_A 427 PETACRALQNALDRAEV--CPIVID--VRWDRFLLAYTAQ 462 (486)
T ss_dssp HHHHHHHHHHHHHTTCS--SCEECE--ECHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhCCCC--eEEEEe--CCHHHHhhhhccc
Confidence 99999999999986532 232222 4566666554433
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-22 Score=167.70 Aligned_cols=207 Identities=14% Similarity=0.078 Sum_probs=140.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEE-e--cCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKAS-V--RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+|+++||||+|+||+++++.|+++|++|+++ + |+.++...+...+ .+. |+.|++++.++++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~------~~~-----~~~~~~~v~~~~~~~~~~ 69 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN------PGT-----IALAEQKPERLVDATLQH 69 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS------TTE-----EECCCCCGGGHHHHHGGG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh------CCC-----cccCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999 6 8765444332221 122 2235555544443
Q ss_pred --CccEEEEccCCCCC--------CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCc
Q 020266 81 --GCDGVCHTASPFYH--------DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 --~~d~vih~a~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|+||||||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.++..+.+
T Consensus 70 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~------- 142 (244)
T 1zmo_A 70 GEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLA------- 142 (244)
T ss_dssp SSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT-------
T ss_pred cCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCCC-------
Confidence 68999999996432 122345578999999999999987642 1457899999976554211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchH--HHHHHHHh-CCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSA--AAVLSLIK-GAQ 221 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~--~~~~~~~~-~~~ 221 (328)
....|+.||.+.+.+++.++.+. |+++++++||.+.++.... ..... ........ ..+
T Consensus 143 ---------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-~~~~~~~~~~~~~~~~~~p 206 (244)
T 1zmo_A 143 ---------------YNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFP-TSDWENNPELRERVDRDVP 206 (244)
T ss_dssp ---------------TCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBC-HHHHHHCHHHHHHHHHHCT
T ss_pred ---------------CchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccc-cccccchHHHHHHHhcCCC
Confidence 12459999999999999998763 8999999999998775300 00000 11122222 111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEE
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~ 254 (328)
...+.+++|+|+++++++.... ..|.+.
T Consensus 207 -----~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i 236 (244)
T 1zmo_A 207 -----LGRLGRPDEMGALITFLASRRAAPIVGQFF 236 (244)
T ss_dssp -----TCSCBCHHHHHHHHHHHHTTTTGGGTTCEE
T ss_pred -----CCCCcCHHHHHHHHHHHcCccccCccCCEE
Confidence 1247799999999999987643 256443
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=176.02 Aligned_cols=216 Identities=18% Similarity=0.118 Sum_probs=153.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||+|+||+++++.|+++|++|++++|+... +.+....... ++.++.+|++|++++.++++
T Consensus 211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~~----~~~~~~~Dvtd~~~v~~~~~~~~~~~ 285 (454)
T 3u0b_A 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADKV----GGTALTLDVTADDAVDKITAHVTEHH 285 (454)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHHH----TCEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHc----CCeEEEEecCCHHHHHHHHHHHHHHc
Confidence 468899999999999999999999999999999986432 2222222211 46789999999999887765
Q ss_pred -C-ccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -G-CDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~-~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
+ +|+||||||.... ...+.+...+++|+.|+.++.+++...+ +..+||++||++...+.+
T Consensus 286 g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~---------- 355 (454)
T 3u0b_A 286 GGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNR---------- 355 (454)
T ss_dssp TTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCT----------
T ss_pred CCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCC----------
Confidence 3 8999999997432 2334566789999999999999987652 456899999988776422
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|...+.+++.++.+ .|+++++|.||.+.++...... .......... ...
T Consensus 356 ------------g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~----~~~~~~~~~~----~~l 415 (454)
T 3u0b_A 356 ------------GQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIP----LATREVGRRL----NSL 415 (454)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC--------------CHHHHHS----BTT
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcc----hhhHHHHHhh----ccc
Confidence 1355999999999999888765 4899999999999887532210 0011111111 112
Q ss_pred ccceeHHHHHHHHHHhhcCC--CCCC-cEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVP--SANG-RYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~ 257 (328)
..+..++|+|+++.+++... ...| .+++.+
T Consensus 416 ~r~g~pedvA~~v~fL~s~~a~~itG~~i~vdG 448 (454)
T 3u0b_A 416 FQGGQPVDVAELIAYFASPASNAVTGNTIRVCG 448 (454)
T ss_dssp SSCBCHHHHHHHHHHHHCGGGTTCCSCEEEESS
T ss_pred cCCCCHHHHHHHHHHHhCCccCCCCCcEEEECC
Confidence 33578999999999998743 2356 445443
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=163.09 Aligned_cols=223 Identities=12% Similarity=0.044 Sum_probs=147.7
Q ss_pred CCCCeEEEECCc--cHHHHHHHHHHHHCCCeEEEEecCC-----------CChhhhhhhhhccCCCCcEEEEEcc-----
Q 020266 7 AAGKVVCVTGAS--GYIASWLVKLLLSRGYTVKASVRDP-----------NDPKKTRHLLALDGASERLQLFKAN----- 68 (328)
Q Consensus 7 ~~~~~vlVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~~~~~~~~~~~~~~~~~~~~~~D----- 68 (328)
+++|+++||||+ |+||+++++.|+++|++|++++|++ .+.+.+..+ ...........+.+|
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVL-PDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBC-TTSSBCCEEEEEEECTTCCS
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhh-ccccccccccccccceeccc
Confidence 568999999999 9999999999999999999998642 222111111 000000012333333
Q ss_pred ---CC----C--------cCchHHhhC-------CccEEEEccCCCC-------CCCCCcchhhhhHHHHHHHHHHHHHh
Q 020266 69 ---LL----E--------EGSFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCA 119 (328)
Q Consensus 69 ---l~----~--------~~~~~~~~~-------~~d~vih~a~~~~-------~~~~~~~~~~~~~N~~~~~~l~~~~~ 119 (328)
++ | ++++.++++ ++|++|||||... ....+.+...+++|+.++.++++++.
T Consensus 85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 164 (297)
T 1d7o_A 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22 2 566666554 6899999998531 12233456789999999999999998
Q ss_pred cCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC-chhhhhhHHHHHHHHHHHHh----cCccEEEEc
Q 020266 120 KFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE-LWYPLSKTLAEDAAWKFAKE----KSIDLVTIN 193 (328)
Q Consensus 120 ~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilR 193 (328)
+.. ..+++|++||.+...+.+ .. ..|+.||.+.+.+++.++.+ +|+++++++
T Consensus 165 ~~m~~~g~iv~isS~~~~~~~~----------------------~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~ 222 (297)
T 1d7o_A 165 PIMNPGGASISLTYIASERIIP----------------------GYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTIS 222 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSCCT----------------------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHhccCceEEEEeccccccCCC----------------------CcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEe
Confidence 752 126899999976554211 11 34999999999999998876 589999999
Q ss_pred CCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCC-cEEEecC
Q 020266 194 PAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANG-RYCLVER 258 (328)
Q Consensus 194 p~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g-~~~~~~~ 258 (328)
||.+.+|..... ..............+ ...+.+++|+|+++++++... ...| .+++.++
T Consensus 223 PG~v~T~~~~~~-~~~~~~~~~~~~~~p-----~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG 284 (297)
T 1d7o_A 223 AGPLGSRAAKAI-GFIDTMIEYSYNNAP-----IQKTLTADEVGNAAAFLVSPLASAITGATIYVDNG 284 (297)
T ss_dssp ECCCBCCCSSCC-SHHHHHHHHHHHHSS-----SCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ccccccchhhhc-cccHHHHHHhhccCC-----CCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 999999864432 112222222322222 124679999999999998743 2356 4455443
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=178.00 Aligned_cols=227 Identities=14% Similarity=0.135 Sum_probs=160.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhc-cCCCCcEEEEEccCCCcCchHHhhCC--cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDG--CD 83 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d 83 (328)
.+++||||||+|+||.+++++|+++|+ +|++++|+.........+... .....++.++.+|++|++++.++++. +|
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld 337 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN 337 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence 478999999999999999999999998 588889976432222222111 11235789999999999999998874 99
Q ss_pred EEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020266 84 GVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (328)
Q Consensus 84 ~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 158 (328)
+|||+||..... ..+.+...+++|+.|+.+|.+++....+.++||++||+++++|.+
T Consensus 338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~------------------ 399 (511)
T 2z5l_A 338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNA------------------ 399 (511)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCT------------------
T ss_pred EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCC------------------
Confidence 999999974432 223445678899999999999987643567899999987776422
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHH
Q 020266 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238 (328)
Q Consensus 159 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 238 (328)
....|+.+|...+.+.+... ..|+++++|+||.+.+.+.... ... ..+... ...+++++|+++
T Consensus 400 ----g~~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tgm~~~--~~~---~~~~~~-------g~~~l~~e~~a~ 462 (511)
T 2z5l_A 400 ----GQGAYAAANAALDALAERRR-AAGLPATSVAWGLWGGGGMAAG--AGE---ESLSRR-------GLRAMDPDAAVD 462 (511)
T ss_dssp ----TBHHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTTCCCC--HHH---HHHHHH-------TBCCBCHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccCCccccc--ccH---HHHHhc-------CCCCCCHHHHHH
Confidence 12459999999999998764 5699999999998843332211 111 111111 134789999999
Q ss_pred HHHHhhcCCCCCCcEEEecCccCHHHHHHHHHHhC
Q 020266 239 AHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELY 273 (328)
Q Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~~~~ 273 (328)
++..++.++.. .+.+. .+.+..+...+....
T Consensus 463 ~l~~al~~~~~--~v~v~--~~d~~~~~~~~~~~~ 493 (511)
T 2z5l_A 463 ALLGAMGRNDV--CVTVV--DVDWERFAPATNAIR 493 (511)
T ss_dssp HHHHHHHHTCS--EEEEC--CBCHHHHHHHHHHHS
T ss_pred HHHHHHhCCCC--EEEEE--eCCHHHHHhhhcccC
Confidence 99999986432 22222 345666666555443
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-20 Score=161.41 Aligned_cols=231 Identities=14% Similarity=0.043 Sum_probs=146.1
Q ss_pred CcccccCCCCeEEEECC--ccHHHHHHHHHHHHCCCeEEEEecCCC--------ChhhhhhhhhccCCC--CcEEEEEcc
Q 020266 1 MSSVAAAAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDPN--------DPKKTRHLLALDGAS--ERLQLFKAN 68 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~--------~~~~~~~~~~~~~~~--~~~~~~~~D 68 (328)
||.|. +++|+++|||| +|+||+++++.|+++|++|++++|++. ....+.......... ....++.+|
T Consensus 2 M~~~~-l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (315)
T 2o2s_A 2 AFPID-LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLD 80 (315)
T ss_dssp --CCC-CTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECC
T ss_pred CCccc-CCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccc
Confidence 54443 56899999999 899999999999999999999987531 000111111110000 012344443
Q ss_pred ------------CC--------CcCchHHhhC-------CccEEEEccCCCC-------CCCCCcchhhhhHHHHHHHHH
Q 020266 69 ------------LL--------EEGSFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNV 114 (328)
Q Consensus 69 ------------l~--------~~~~~~~~~~-------~~d~vih~a~~~~-------~~~~~~~~~~~~~N~~~~~~l 114 (328)
++ |++++.++++ ++|++|||||... ....+.+...+++|+.++.++
T Consensus 81 ~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l 160 (315)
T 2o2s_A 81 AAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSL 160 (315)
T ss_dssp TTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred ccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHH
Confidence 33 2556666554 6899999998532 122334567899999999999
Q ss_pred HHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC-chhhhhhHHHHHHHHHHHHh----cCcc
Q 020266 115 LNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE-LWYPLSKTLAEDAAWKFAKE----KSID 188 (328)
Q Consensus 115 ~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~~~~ 188 (328)
++++.+.. ..++||++||.+...+.+ .. ..|+.||.+.+.+.+.++.+ +|++
T Consensus 161 ~~~~~~~m~~~g~Iv~isS~~~~~~~~----------------------~~~~~Y~asKaal~~l~~~la~el~~~~gIr 218 (315)
T 2o2s_A 161 LQHFGPIMNEGGSAVTLSYLAAERVVP----------------------GYGGGMSSAKAALESDTRTLAWEAGQKYGVR 218 (315)
T ss_dssp HHHHSTTEEEEEEEEEEEEGGGTSCCT----------------------TCCTTHHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHhcCCEEEEEecccccccCC----------------------CccHHHHHHHHHHHHHHHHHHHHhCcccCeE
Confidence 99998762 126899999976554211 11 24999999999999998775 5899
Q ss_pred EEEEcCCcccCCCCCC-----CCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEecCc
Q 020266 189 LVTINPAMVIGPLLQP-----TLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVERV 259 (328)
Q Consensus 189 ~~ilRp~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~~ 259 (328)
+++|+||.|.++.... ................| ...+..++|+|+++++++... ...|.+...++.
T Consensus 219 vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 291 (315)
T 2o2s_A 219 VNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAP-----LRRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNG 291 (315)
T ss_dssp EEEEEECCCCCHHHHHTTCSSSSCHHHHHHHHHHHHSS-----SCCCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred EEEEecccccchhhhhccccccchhHHHHHHHHhccCC-----CCCCCCHHHHHHHHHHHhCchhccCcCCEEEECCC
Confidence 9999999997752110 00011111111111111 123679999999999998743 236755545433
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-21 Score=172.59 Aligned_cols=174 Identities=15% Similarity=0.057 Sum_probs=125.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-------eEEEEecCCC--ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
.|+|+||||+||||++++..|++.|+ +|+++++.+. ........+. ...+.++ +|+++.+++.+++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~----~~~~~~~-~di~~~~~~~~a~ 78 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELE----DCAFPLL-AGLEATDDPKVAF 78 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH----TTTCTTE-EEEEEESCHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhh----ccccccc-CCeEeccChHHHh
Confidence 46899999999999999999999986 8999887542 1111111110 0112223 6888777888889
Q ss_pred CCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCcccc-CCC-CCC
Q 020266 80 DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVD-ETW-FSD 156 (328)
Q Consensus 80 ~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~-E~~-~~~ 156 (328)
+++|+|||+||....... ...+.++.|+.++.++++++++.+ ...++|++|+..... .++. |.. ...
T Consensus 79 ~~~D~Vih~Ag~~~~~~~-~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~---------~~~~~~~~~~~~ 148 (327)
T 1y7t_A 79 KDADYALLVGAAPRKAGM-ERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTN---------ALIAYKNAPGLN 148 (327)
T ss_dssp TTCSEEEECCCCCCCTTC-CHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH---------HHHHHHTCTTSC
T ss_pred CCCCEEEECCCcCCCCCC-CHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhh---------HHHHHHHcCCCC
Confidence 999999999997543333 334789999999999999999873 223788888743111 1122 221 112
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCC
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQ 203 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~ 203 (328)
| .+.|+.+|+.+|++...+++.+|++.+++||++||||+..
T Consensus 149 p------~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 149 P------RNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp G------GGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred h------hheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 2 2569999999999999999889999999999999999754
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=172.14 Aligned_cols=203 Identities=16% Similarity=0.118 Sum_probs=150.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCCh---hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDP---KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
++++|||||+|+||.++++.|+++|+ +|+++.|+.... ..+...+.. ...++.++.+|++|++++.++++
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~--~g~~v~~~~~Dvtd~~~v~~~~~~i~~ 316 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQ--LGVRVTIAACDAADREALAALLAELPE 316 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHH--TTCEEEEEECCTTCHHHHHHHHHTCCT
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999998 788888864332 222222222 23579999999999999888876
Q ss_pred --CccEEEEccCCC-CCC-----CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 --GCDGVCHTASPF-YHD-----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~-~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
.+|+||||||.. ... ..+.+...+++|+.|+.++.+++... ..++||++||++++.|.+
T Consensus 317 ~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~-~~~~iV~~SS~a~~~g~~------------ 383 (496)
T 3mje_A 317 DAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL-DLDAFVLFSSGAAVWGSG------------ 383 (496)
T ss_dssp TSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTTCT------------
T ss_pred hCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc-CCCEEEEEeChHhcCCCC------------
Confidence 479999999975 221 22345578899999999999999987 778999999988777432
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcccee
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 232 (328)
....|+.+|...+.+.+... ..|+++++|.||.+.+++..... .....+... ....+.
T Consensus 384 ----------g~~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~gm~~~~----~~~~~l~~~-------g~~~l~ 441 (496)
T 3mje_A 384 ----------GQPGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVGMATDP----EVHDRLVRQ-------GVLAME 441 (496)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSCC----------CHHHHHT-------TEEEEC
T ss_pred ----------CcHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCccccCh----HHHHHHHhc-------CCCCCC
Confidence 12459999999999988765 46999999999998776543211 111122221 123578
Q ss_pred HHHHHHHHHHhhcCCC
Q 020266 233 VKDVANAHIQAFEVPS 248 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~ 248 (328)
.++.++++..++..+.
T Consensus 442 pe~~~~~l~~~l~~~~ 457 (496)
T 3mje_A 442 PEHALGALDQMLENDD 457 (496)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999998653
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=164.90 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=129.5
Q ss_pred CcccccCCCCeEEEECC--ccHHHHHHHHHHHHCCCeEEEEecCC-----------CChhhh-----------hhhhhcc
Q 020266 1 MSSVAAAAGKVVCVTGA--SGYIASWLVKLLLSRGYTVKASVRDP-----------NDPKKT-----------RHLLALD 56 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~~~~-----------~~~~~~~ 56 (328)
||.|. +++|+++|||| +|+||+++++.|+++|++|++++|++ ++.... ...+...
T Consensus 2 m~~~~-l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (319)
T 2ptg_A 2 PLPVD-LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEK 80 (319)
T ss_dssp CCCCC-CTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC----------------------------
T ss_pred Ccccc-cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhc
Confidence 55554 56899999999 89999999999999999999998642 111110 0000000
Q ss_pred CCC-CcEEEEEcc------------CCC--------cCchHHhhC-------CccEEEEccCCCC-------CCCCCcch
Q 020266 57 GAS-ERLQLFKAN------------LLE--------EGSFDSIVD-------GCDGVCHTASPFY-------HDAKDPQV 101 (328)
Q Consensus 57 ~~~-~~~~~~~~D------------l~~--------~~~~~~~~~-------~~d~vih~a~~~~-------~~~~~~~~ 101 (328)
+.. ....++.+| ++| ++++.++++ ++|++|||||... ....+.+.
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~ 160 (319)
T 2ptg_A 81 PVDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYL 160 (319)
T ss_dssp ----CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHH
T ss_pred cccccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHH
Confidence 000 012444444 232 446665554 6899999998532 12233456
Q ss_pred hhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC-chhhhhhHHHHHHHH
Q 020266 102 ELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE-LWYPLSKTLAEDAAW 179 (328)
Q Consensus 102 ~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~-~~Y~~sK~~~E~~~~ 179 (328)
..+++|+.++.++++++.+.. ..++||++||.+...+.+ .. ..|+.||.+.+.+++
T Consensus 161 ~~~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~----------------------~~~~~Y~asKaal~~l~~ 218 (319)
T 2ptg_A 161 AAVSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVIP----------------------GYGGGMSSAKAALESDCR 218 (319)
T ss_dssp HHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC----------------------------------------THHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHhcCceEEEEeccccccccC----------------------ccchhhHHHHHHHHHHHH
Confidence 788999999999999998752 126899999976544211 11 349999999999999
Q ss_pred HHHHh----cCccEEEEcCCcccCCCCCCCCcc-hHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCc
Q 020266 180 KFAKE----KSIDLVTINPAMVIGPLLQPTLNT-SAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGR 252 (328)
Q Consensus 180 ~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~ 252 (328)
.++.+ +|+++++|+||.|.++........ ...+......... .......+..++|+|+++++++... ...|.
T Consensus 219 ~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~r~~~peevA~~v~~L~s~~~~~itG~ 297 (319)
T 2ptg_A 219 TLAFEAGRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSE-ANAPLQKELESDDVGRAALFLLSPLARAVTGA 297 (319)
T ss_dssp HHHHHHHHHHCCEEEEEEECCCC--------------------------------CCCHHHHHHHHHHHTSGGGTTCCSC
T ss_pred HHHHHhccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHh-ccCCCCCCCCHHHHHHHHHHHhCcccCCccCC
Confidence 98776 489999999999988743211000 0000000000000 0001123679999999999998753 23665
Q ss_pred EEEecC
Q 020266 253 YCLVER 258 (328)
Q Consensus 253 ~~~~~~ 258 (328)
....++
T Consensus 298 ~i~vdG 303 (319)
T 2ptg_A 298 TLYVDN 303 (319)
T ss_dssp EEEEST
T ss_pred EEEECC
Confidence 544443
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=170.03 Aligned_cols=207 Identities=17% Similarity=0.143 Sum_probs=141.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec---------CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchH
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR---------DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFD 76 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 76 (328)
.+++|+++||||+|+||+++++.|+++|++|++++| +....+.+...+.... .. +.+|++|.+++.
T Consensus 16 ~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~--~~---~~~D~~d~~~~~ 90 (613)
T 3oml_A 16 RYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAG--GE---AVADYNSVIDGA 90 (613)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTT--CC---EEECCCCGGGHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhC--Ce---EEEEeCCHHHHH
Confidence 467899999999999999999999999999999987 4444444333332221 12 347999998888
Q ss_pred HhhC-------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCC
Q 020266 77 SIVD-------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGK 141 (328)
Q Consensus 77 ~~~~-------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~ 141 (328)
++++ ++|++|||||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.++.++.+
T Consensus 91 ~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~- 169 (613)
T 3oml_A 91 KVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNF- 169 (613)
T ss_dssp HHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCCT-
T ss_pred HHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCC-
Confidence 7776 57999999997432 233456688999999999999988432 1457999999988777422
Q ss_pred CCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHh
Q 020266 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK 218 (328)
Q Consensus 142 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~ 218 (328)
....|+.||.+.+.+++.++.+. |+++++|.|+.+. +......
T Consensus 170 ---------------------~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~~~~~------------ 215 (613)
T 3oml_A 170 ---------------------GQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMTEGIL------------ 215 (613)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCC------------
T ss_pred ---------------------CChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhhhhcc------------
Confidence 12459999999999999998864 8999999998642 2111100
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC-CCC-cEEEec
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS-ANG-RYCLVE 257 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~-~~g-~~~~~~ 257 (328)
+......+.++|+|.++++++.... ..| .+++.+
T Consensus 216 -----~~~~~~~~~pedvA~~v~~L~s~~~~~tG~~i~vdG 251 (613)
T 3oml_A 216 -----PDILFNELKPKLIAPVVAYLCHESCEDNGSYIESAA 251 (613)
T ss_dssp -----CHHHHTTCCGGGTHHHHHHTTSTTCCCCSCEEEEET
T ss_pred -----chhhhhcCCHHHHHHHHHHhcCCCcCCCceEEEECC
Confidence 1111234588999999999987642 245 445443
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=157.82 Aligned_cols=171 Identities=10% Similarity=0.084 Sum_probs=124.6
Q ss_pred CCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCC---------CChhhhhhhhhc-cCCCCcEEEEEccCCCc--C
Q 020266 8 AGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDP---------NDPKKTRHLLAL-DGASERLQLFKANLLEE--G 73 (328)
Q Consensus 8 ~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~--~ 73 (328)
++|+++||||++ .||.++++.|+++|++|++.+|++ ++.......... ......+.++.+|+++. +
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 368999999875 999999999999999999776543 222221112111 11223478888999887 6
Q ss_pred ------------------chHHhhC-------CccEEEEccCCCC-------CCCCCcchhhhhHHHHHHHHHHHHHhcC
Q 020266 74 ------------------SFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCAKF 121 (328)
Q Consensus 74 ------------------~~~~~~~-------~~d~vih~a~~~~-------~~~~~~~~~~~~~N~~~~~~l~~~~~~~ 121 (328)
++.++++ .+|++|||||... ....+.+...+++|+.|+.++++++.+.
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6666554 5899999998521 1223346688999999999999998876
Q ss_pred CC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc-hhhhhhHHHHHHHHHHHHh----cCccEEEEcCC
Q 020266 122 PS-IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL-WYPLSKTLAEDAAWKFAKE----KSIDLVTINPA 195 (328)
Q Consensus 122 ~~-~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~ 195 (328)
.. .++||++||.+...+.+ ... .|+.||.+.+.+.+.++.+ +|+++++|.||
T Consensus 161 m~~~g~Iv~isS~~~~~~~~----------------------~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG 218 (329)
T 3lt0_A 161 MKPQSSIISLTYHASQKVVP----------------------GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAG 218 (329)
T ss_dssp EEEEEEEEEEECGGGTSCCT----------------------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhhCCeEEEEeCccccCCCC----------------------cchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecc
Confidence 21 25899999976554211 112 4999999999999988775 48999999999
Q ss_pred cccCC
Q 020266 196 MVIGP 200 (328)
Q Consensus 196 ~v~G~ 200 (328)
.|..+
T Consensus 219 ~v~T~ 223 (329)
T 3lt0_A 219 PLKSR 223 (329)
T ss_dssp CCCCH
T ss_pred eeech
Confidence 99776
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-19 Score=165.45 Aligned_cols=224 Identities=13% Similarity=0.047 Sum_probs=154.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCe-EEEE-ecCCCC-------------hhhhhhhhhccCCCCcEEEEEccCCCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYT-VKAS-VRDPND-------------PKKTRHLLALDGASERLQLFKANLLEE 72 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~-~r~~~~-------------~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 72 (328)
+++++|||||+|+||.++++.|+++|++ |+++ +|+... ...+...+... ..++.++.+|++|+
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dvtd~ 327 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL--GATATVVTCDLTDA 327 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHH--TCEEEEEECCTTSH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhc--CCEEEEEECCCCCH
Confidence 4789999999999999999999999988 5555 777432 22222222222 35789999999999
Q ss_pred CchHHhhC------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCCC----ccEEEEecchhhhc
Q 020266 73 GSFDSIVD------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPS----IKRVVLTSSMAAVL 137 (328)
Q Consensus 73 ~~~~~~~~------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~----~~~~v~~SS~~~~~ 137 (328)
+++.++++ .+|+||||||.... ...+.+...+++|+.|+.+|.+++...+. .++||++||++++.
T Consensus 328 ~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~ 407 (525)
T 3qp9_A 328 EAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIW 407 (525)
T ss_dssp HHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTT
T ss_pred HHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcC
Confidence 99888876 36999999997432 22334567889999999999999988731 67999999988776
Q ss_pred cCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHH
Q 020266 138 NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI 217 (328)
Q Consensus 138 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~ 217 (328)
|.+ ....|+.+|...+.+....+ ..|+++++|.||.+-++.... . .....+.
T Consensus 408 g~~----------------------g~~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~~tgm~~~--~---~~~~~~~ 459 (525)
T 3qp9_A 408 GGA----------------------GQGAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPWEGSRVTE--G---ATGERLR 459 (525)
T ss_dssp CCT----------------------TCHHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCBTTSGGGS--S---HHHHHHH
T ss_pred CCC----------------------CCHHHHHHHHHHHHHHHHHH-hCCCCEEEEECCccccccccc--h---hhHHHHH
Confidence 422 12459999999998876553 359999999999983322111 0 1111121
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCCcEEEecCccCHHHHHHHHHHh
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIREL 272 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~~~ 272 (328)
.. ....+.++++++++..++..+.. ...+ ..+.+..+...+...
T Consensus 460 ~~-------g~~~l~pee~a~~l~~~l~~~~~--~v~v--~~~dw~~~~~~~~~~ 503 (525)
T 3qp9_A 460 RL-------GLRPLAPATALTALDTALGHGDT--AVTI--ADVDWSSFAPGFTTA 503 (525)
T ss_dssp HT-------TBCCBCHHHHHHHHHHHHHHTCS--EEEE--CCBCHHHHHHHHHSS
T ss_pred hc-------CCCCCCHHHHHHHHHHHHhCCCC--eEEE--EeCCHHHHHhhcccc
Confidence 21 12467899999999999986532 1222 234555665555443
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=154.90 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=141.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccC-CCcCch-HHh---hC
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL-LEEGSF-DSI---VD 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~-~~~---~~ 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|.. .+.+...+... ..++..+.+|+ .+.+.+ .++ +.
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~~--g~~~~~~~~Dv~~~~~~~~~~~~~~~G 394 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKAA--GGEAWPDQHDVAKDSEAIIKNVIDKYG 394 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHHHS
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHhc--CCeEEEEEcChHHHHHHHHHHHHHhcC
Confidence 45689999999999999999999999999999988732 22222222221 23566778888 554332 222 23
Q ss_pred CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 ~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|++|||||... ....+.+...+++|+.|+.++.+++.+.+ +.++||++||.+...+.+
T Consensus 395 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~------------ 462 (604)
T 2et6_A 395 TIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNF------------ 462 (604)
T ss_dssp CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCT------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC------------
Confidence 7899999999732 22334567889999999999988876531 446899999987665321
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCcc
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
....|+.||.+...+.+.++.+ +|+++++|.||. -.+... ... +....+
T Consensus 463 ----------~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~-------~~~----------~~~~~~ 514 (604)
T 2et6_A 463 ----------GQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTL-------SIM----------REQDKN 514 (604)
T ss_dssp ----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC--------------------------CC
T ss_pred ----------CChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCcccc-------ccC----------chhhcc
Confidence 1245999999999999999886 489999999983 222110 000 001123
Q ss_pred ceeHHHHHHHHHHhhcCCC-CCC-cEEEec
Q 020266 230 WVNVKDVANAHIQAFEVPS-ANG-RYCLVE 257 (328)
Q Consensus 230 ~v~v~D~a~~~~~~~~~~~-~~g-~~~~~~ 257 (328)
...++|+|.++++++.... ..| .+.+.+
T Consensus 515 ~~~pe~vA~~v~~L~s~~~~itG~~~~vdG 544 (604)
T 2et6_A 515 LYHADQVAPLLVYLGTDDVPVTGETFEIGG 544 (604)
T ss_dssp SSCGGGTHHHHHHTTSTTCCCCSCEEEEET
T ss_pred CCCHHHHHHHHHHHhCCccCCCCcEEEECC
Confidence 4589999999999886533 355 444443
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-17 Score=154.75 Aligned_cols=201 Identities=19% Similarity=0.136 Sum_probs=138.3
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC---------CChhhhhhhhhccCCCCcEEEEEccCCC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP---------NDPKKTRHLLALDGASERLQLFKANLLE 71 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 71 (328)
|+++. +++|+++||||++.||+++++.|+++|++|++.+|+. +..+.+...+...+ .+ ..+|++|
T Consensus 1 m~~~~-l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g--~~---~~~d~~d 74 (604)
T 2et6_A 1 MSPVD-FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNG--GV---AVADYNN 74 (604)
T ss_dssp -CCCC-CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTT--CE---EEEECCC
T ss_pred CCCCC-CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcC--Ce---EEEEcCC
Confidence 55443 5689999999999999999999999999999998754 22232222222211 12 2358887
Q ss_pred cCchHHhhC-------CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhh
Q 020266 72 EGSFDSIVD-------GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAV 136 (328)
Q Consensus 72 ~~~~~~~~~-------~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~ 136 (328)
.++++++++ ++|++|||||... ....+.++..+++|+.|+.++++++.+.+ +.++||++||.+..
T Consensus 75 ~~~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~ 154 (604)
T 2et6_A 75 VLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGL 154 (604)
T ss_dssp TTCHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHc
Confidence 776555543 6899999999632 22334567889999999999988876542 34689999998776
Q ss_pred ccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHH
Q 020266 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAV 213 (328)
Q Consensus 137 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~ 213 (328)
++.+ ....|+.||.+...+.+.++.+ +|+++++|.|+ +..+ +.
T Consensus 155 ~~~~----------------------~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~-----------m~ 200 (604)
T 2et6_A 155 YGNF----------------------GQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSR-----------MT 200 (604)
T ss_dssp HCCT----------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCH-----------HH
T ss_pred CCCC----------------------CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCc-----------cc
Confidence 6321 1245999999999999999886 48999999996 2211 00
Q ss_pred HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 214 LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
. .. .+........++|+|.++++++...
T Consensus 201 ~----~~--~~~~~~~~~~pe~vA~~v~~L~s~~ 228 (604)
T 2et6_A 201 E----SI--MPPPMLEKLGPEKVAPLVLYLSSAE 228 (604)
T ss_dssp H----TT--SCHHHHTTCSHHHHHHHHHHHTSSS
T ss_pred c----cc--CChhhhccCCHHHHHHHHHHHhCCc
Confidence 0 00 0000112358999999999998754
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-17 Score=166.46 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=143.8
Q ss_pred cCCCCeEEEECCccH-HHHHHHHHHHHCCCeEEEEe-cCCCChhhhhhhh-hccC-CCCcEEEEEccCCCcCchHHhhC-
Q 020266 6 AAAGKVVCVTGASGY-IASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLL-ALDG-ASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
.+++|++|||||+|+ ||+++++.|++.|++|++++ |+..+.......+ .... ...++.++.+|++|++++.++++
T Consensus 672 ~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~ 751 (1887)
T 2uv8_A 672 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 751 (1887)
T ss_dssp CCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHH
Confidence 356899999999999 99999999999999999984 6554443322221 1111 13478899999999998877653
Q ss_pred ------------CccEEEEccCCCCCC------C--CCcchhhhhHHHHHHHHHHHHHhcC--C---CccEEEEecchhh
Q 020266 81 ------------GCDGVCHTASPFYHD------A--KDPQVELLDPAVKGTLNVLNSCAKF--P---SIKRVVLTSSMAA 135 (328)
Q Consensus 81 ------------~~d~vih~a~~~~~~------~--~~~~~~~~~~N~~~~~~l~~~~~~~--~---~~~~~v~~SS~~~ 135 (328)
.+|+||||||..... . .+.+...+++|+.++.+++++++.. . +.++||++||.++
T Consensus 752 i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag 831 (1887)
T 2uv8_A 752 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 831 (1887)
T ss_dssp HHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHh
Confidence 489999999974322 1 2345688999999999999987322 1 2368999999765
Q ss_pred hccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHH-HHHHHHhcC--ccEEEEcCCcccC-CCCCCCCcchHH
Q 020266 136 VLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA-AWKFAKEKS--IDLVTINPAMVIG-PLLQPTLNTSAA 211 (328)
Q Consensus 136 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~-~~~~~~~~~--~~~~ilRp~~v~G-~~~~~~~~~~~~ 211 (328)
..+ ....|+.||.+.+.+ .+.++.+.+ +++++|.||.+.| +..... ...
T Consensus 832 ~~g------------------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~-~~~-- 884 (1887)
T 2uv8_A 832 TFG------------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-NII-- 884 (1887)
T ss_dssp CSS------------------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----C-CTT--
T ss_pred ccC------------------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccc-hhH--
Confidence 442 013499999999998 666666543 9999999999984 321110 111
Q ss_pred HHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 212 AVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.......+ ..+..++|+|.++++++...
T Consensus 885 --~~~~~~~p------lr~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 885 --AEGIEKMG------VRTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp --HHHHHTTS------CCCEEHHHHHHHHHGGGSHH
T ss_pred --HHHHHhcC------CCCCCHHHHHHHHHHHhCCC
Confidence 11222211 13558999999999998754
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=164.00 Aligned_cols=207 Identities=14% Similarity=0.080 Sum_probs=141.9
Q ss_pred CCCCeEEEECCccH-HHHHHHHHHHHCCCeEEEE-ecCCCChhhhhhhh-hccC-CCCcEEEEEccCCCcCchHHhhC--
Q 020266 7 AAGKVVCVTGASGY-IASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLL-ALDG-ASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~-iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
+++|+++||||+|+ ||+++++.|+++|++|+++ .|+.++.......+ .... ...++.++.+|++|++++.++++
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I 553 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI 553 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 56789999999998 9999999999999999998 56655544332222 1111 13468899999999999887663
Q ss_pred -----------CccEEEEccCCCCCC------C--CCcchhhhhHHHHHHHHHHHHHh--cCC---CccEEEEecchhhh
Q 020266 81 -----------GCDGVCHTASPFYHD------A--KDPQVELLDPAVKGTLNVLNSCA--KFP---SIKRVVLTSSMAAV 136 (328)
Q Consensus 81 -----------~~d~vih~a~~~~~~------~--~~~~~~~~~~N~~~~~~l~~~~~--~~~---~~~~~v~~SS~~~~ 136 (328)
.+|+||||||..... . .+.+...+++|+.++.+++++++ ... +.++||++||.++.
T Consensus 554 ~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~ 633 (1688)
T 2pff_A 554 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT 633 (1688)
T ss_dssp HSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTT
T ss_pred HHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhc
Confidence 489999999974322 1 23356889999999999999872 221 23589999997654
Q ss_pred ccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHH-HHHHHHhcC--ccEEEEcCCcccCCCCCCCCcchHHHH
Q 020266 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA-AWKFAKEKS--IDLVTINPAMVIGPLLQPTLNTSAAAV 213 (328)
Q Consensus 137 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~-~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~ 213 (328)
.+ ....|+.||.+.+.+ .+.++.+.+ +++++|.||.+.|........ ..
T Consensus 634 ~G------------------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~e----~~ 685 (1688)
T 2pff_A 634 FG------------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANN----II 685 (1688)
T ss_dssp SS------------------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTTT----TC
T ss_pred cC------------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCch----HH
Confidence 42 013499999999998 444444333 899999999988532111000 00
Q ss_pred HHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 214 LSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 214 ~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
..........+..++|+|+++++++...
T Consensus 686 ------~~~l~~iplR~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 686 ------AEGIEKMGVRTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp ------STTTSSSSCCCCCCCTTHHHHHHHTSTT
T ss_pred ------HHHHHhCCCCCCCHHHHHHHHHHHhCCC
Confidence 0000111113458899999999998764
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=140.32 Aligned_cols=207 Identities=8% Similarity=-0.067 Sum_probs=141.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHH-CCCeEEEEecCCCChhh------------hhhhhhccCCCCcEEEEEccCCCcCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLS-RGYTVKASVRDPNDPKK------------TRHLLALDGASERLQLFKANLLEEGS 74 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~------------~~~~~~~~~~~~~~~~~~~Dl~~~~~ 74 (328)
.+|++|||||++.||+++++.|++ .|++|++++|+.+.... ....... ...++..+.+|++|+++
T Consensus 46 ~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~--~G~~a~~i~~Dvtd~~~ 123 (405)
T 3zu3_A 46 GPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQ--KGLYAKSINGDAFSDEI 123 (405)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHH--TTCCEEEEESCTTSHHH
T ss_pred CCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHh--cCCceEEEECCCCCHHH
Confidence 478999999999999999999999 99999999987655321 1112222 13468889999999988
Q ss_pred hHHhhC-------CccEEEEccCCC---------------------------------------CCCCCCcchhhhhHHH
Q 020266 75 FDSIVD-------GCDGVCHTASPF---------------------------------------YHDAKDPQVELLDPAV 108 (328)
Q Consensus 75 ~~~~~~-------~~d~vih~a~~~---------------------------------------~~~~~~~~~~~~~~N~ 108 (328)
+.++++ ++|++|||||.. .....+.+...+++|.
T Consensus 124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~ 203 (405)
T 3zu3_A 124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG 203 (405)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence 777665 689999999863 1112234556777887
Q ss_pred HHHH-HHHHHHhc-CC--CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh
Q 020266 109 KGTL-NVLNSCAK-FP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184 (328)
Q Consensus 109 ~~~~-~l~~~~~~-~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~ 184 (328)
.++. .+++++.. .. +..++|.+||++...+.+ . .....|+.+|.+.+.+.+.++.+
T Consensus 204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p--~------------------~~~~aY~AaKaal~~ltrsLA~E 263 (405)
T 3zu3_A 204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHD--I------------------YWNGSIGAAKKDLDQKVLAIRES 263 (405)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTT--T------------------TTTSHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCC--C------------------ccchHHHHHHHHHHHHHHHHHHH
Confidence 7765 55655432 11 235899999976554221 0 01145999999999999999886
Q ss_pred ---c-CccEEEEcCCcccCCCCC--CCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 185 ---K-SIDLVTINPAMVIGPLLQ--PTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 185 ---~-~~~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
+ |+++.++-||.+-.+... +........+.+.++ .+-..+|+++++.+++..
T Consensus 264 la~~~GIRVNaVaPG~i~T~~s~~ip~~p~y~~~l~~~mk----------r~G~~Ed~a~~i~~L~sd 321 (405)
T 3zu3_A 264 LAAHGGGDARVSVLKAVVSQASSAIPMMPLYLSLLFKVMK----------EKGTHEGCIEQVYSLYKD 321 (405)
T ss_dssp HHTTTSCEEEEEECCCCCCHHHHTSTTHHHHHHHHHHHHH----------HHTCCCCHHHHHHHHHHH
T ss_pred hCcccCeEEEEEEeCCCcCchhhcCCCCcHHHHHHHHHHh----------cCCCcHHHHHHHHHHHhc
Confidence 4 899999999999876321 111111122222222 133567899999988874
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=161.79 Aligned_cols=206 Identities=15% Similarity=0.077 Sum_probs=142.3
Q ss_pred CCCCeEEEECCccH-HHHHHHHHHHHCCCeEEEEe-cCCCChhhhhh-hhhccC-CCCcEEEEEccCCCcCchHHhhC--
Q 020266 7 AAGKVVCVTGASGY-IASWLVKLLLSRGYTVKASV-RDPNDPKKTRH-LLALDG-ASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~-~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
+++|++|||||+|+ ||.++++.|+++|++|++++ |+......... +..... ...++.++.+|++|++++.++++
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i 729 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYI 729 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 56799999999999 99999999999999999986 44433322221 211111 23578899999999998877663
Q ss_pred ---------CccEEEEccCCCCCC---C-----CCcchhhhhHHHHHHHHHHHHHh--cCC---CccEEEEecchhhhcc
Q 020266 81 ---------GCDGVCHTASPFYHD---A-----KDPQVELLDPAVKGTLNVLNSCA--KFP---SIKRVVLTSSMAAVLN 138 (328)
Q Consensus 81 ---------~~d~vih~a~~~~~~---~-----~~~~~~~~~~N~~~~~~l~~~~~--~~~---~~~~~v~~SS~~~~~~ 138 (328)
.+|+||||||..... . .+.+...+++|+.++.+++++++ ... +.++||++||.++..+
T Consensus 730 ~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~g 809 (1878)
T 2uv9_A 730 YDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTFG 809 (1878)
T ss_dssp HCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSSS
T ss_pred HHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhccC
Confidence 489999999974321 1 13456889999999999887632 221 2368999999765542
Q ss_pred CCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh-c--CccEEEEcCCccc-CCCCCCCCcchHHHHH
Q 020266 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-K--SIDLVTINPAMVI-GPLLQPTLNTSAAAVL 214 (328)
Q Consensus 139 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~--~~~~~ilRp~~v~-G~~~~~~~~~~~~~~~ 214 (328)
. ...|+.+|.+.+.+++.+..+ . ++++++|.||.+- ++.... .....
T Consensus 810 g------------------------~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~-----~~~~~ 860 (1878)
T 2uv9_A 810 N------------------------DGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA-----NNLVA 860 (1878)
T ss_dssp C------------------------CSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH-----HHHTH
T ss_pred C------------------------chHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc-----chhhH
Confidence 0 134999999999998766543 2 3999999999987 443211 11112
Q ss_pred HHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 215 SLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 215 ~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
......+ - .+..++|+|.++++++...
T Consensus 861 ~~~~~~p---l---r~~sPeEVA~avlfLaSd~ 887 (1878)
T 2uv9_A 861 EGVEKLG---V---RTFSQQEMAFNLLGLMAPA 887 (1878)
T ss_dssp HHHHTTT---C---CCBCHHHHHHHHHHHHSHH
T ss_pred HHHHhcC---C---CCCCHHHHHHHHHHHhCCc
Confidence 2222221 1 2448999999999988653
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-16 Score=152.38 Aligned_cols=203 Identities=16% Similarity=0.165 Sum_probs=146.9
Q ss_pred CCCeEEEECCccHHHHHHHHHHH-HCCC-eEEEEecCCCC---hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 8 AGKVVCVTGASGYIASWLVKLLL-SRGY-TVKASVRDPND---PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~-~~g~-~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
++++++||||+|.||+.+++.|+ ++|. +|++++|+..+ ...+...+.. ...++.++.+|++|++++.++++
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~--~G~~v~~~~~Dvsd~~~v~~~~~~~ 606 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTA--YGAEVSLQACDVADRETLAKVLASI 606 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHH--TTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHh--cCCcEEEEEeecCCHHHHHHHHHHH
Confidence 47899999999999999999999 7898 58889998433 3332222222 23578999999999999888875
Q ss_pred ----CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 ----GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ----~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|+||||||.... ...+.+...+++|+.|+.++.+++... . +||++||++...|.+
T Consensus 607 ~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~--l-~iV~~SS~ag~~g~~----------- 672 (795)
T 3slk_A 607 PDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD--V-ALVLFSSVSGVLGSG----------- 672 (795)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT--S-EEEEEEETHHHHTCS-----------
T ss_pred HHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC--C-EEEEEccHHhcCCCC-----------
Confidence 46999999997433 223456688999999999999998554 3 899999988777432
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHH-HHHHHHhCCCCCCCCCccc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAA-AVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 230 (328)
....|+.+|...+.+.+..+. .|+++++|-||.+-+++... .... ....+... ....
T Consensus 673 -----------g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~g~~~---~~~~~~~~~~~~~-------g~~~ 730 (795)
T 3slk_A 673 -----------GQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEHGMAS---TLREAEQDRLARS-------GLLP 730 (795)
T ss_dssp -----------SCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCCCHHH---HHHHHHHHHHHHT-------TBCC
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcchhhc---cccHHHHHHHHhc-------CCCC
Confidence 235599999888887776654 59999999999887654210 0111 11112221 1235
Q ss_pred eeHHHHHHHHHHhhcCCC
Q 020266 231 VNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~ 248 (328)
+..++....+..++..+.
T Consensus 731 l~~~e~~~~~~~~l~~~~ 748 (795)
T 3slk_A 731 ISTEEGLSQFDAACGGAH 748 (795)
T ss_dssp CCHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHhCCC
Confidence 678899999988887653
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-16 Score=138.02 Aligned_cols=206 Identities=9% Similarity=-0.095 Sum_probs=137.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHH-CCCeEEEEecCCCChhh------------hhhhhhccCCCCcEEEEEccCCCcCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLS-RGYTVKASVRDPNDPKK------------TRHLLALDGASERLQLFKANLLEEGS 74 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~------------~~~~~~~~~~~~~~~~~~~Dl~~~~~ 74 (328)
.+|++|||||++.||+++++.|++ .|++|++++|+.+.... +....... ..++..+.+|++|+++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~--G~~a~~i~~Dvtd~~~ 137 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAA--GLYSKSINGDAFSDAA 137 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTSHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhc--CCcEEEEEecCCCHHH
Confidence 478999999999999999999999 99999999997655332 11222221 3468889999999987
Q ss_pred hHHhh--------CCccEEEEccCCC-------------C--C------------------------CCCCcchhhhhHH
Q 020266 75 FDSIV--------DGCDGVCHTASPF-------------Y--H------------------------DAKDPQVELLDPA 107 (328)
Q Consensus 75 ~~~~~--------~~~d~vih~a~~~-------------~--~------------------------~~~~~~~~~~~~N 107 (328)
+.+++ .++|++|||||.. . . ...+.+...+++|
T Consensus 138 v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn 217 (422)
T 3s8m_A 138 RAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVM 217 (422)
T ss_dssp HHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhh
Confidence 66655 3589999999852 0 0 1122344556666
Q ss_pred HHHHH-HHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHH
Q 020266 108 VKGTL-NVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183 (328)
Q Consensus 108 ~~~~~-~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~ 183 (328)
..+.. .+++++.... +..++|.+||++...+.+ . .....|+.||.+.+.+.+.++.
T Consensus 218 ~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p-----------------~---~~~~aY~ASKaAl~~lTrsLA~ 277 (422)
T 3s8m_A 218 GGQDWELWIDALEGAGVLADGARSVAFSYIGTEITWP-----------------I---YWHGALGKAKVDLDRTAQRLNA 277 (422)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHH-----------------H---HTSHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCC-----------------C---ccchHHHHHHHHHHHHHHHHHH
Confidence 66654 5666654321 235899999976543210 0 0114599999999999999988
Q ss_pred hc---CccEEEEcCCcccCCCCCCCCcchHH---HHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 184 EK---SIDLVTINPAMVIGPLLQPTLNTSAA---AVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 184 ~~---~~~~~ilRp~~v~G~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
+. |++++++.||.+-.+..... ..... .+...++. .-..+|+++++.+++..
T Consensus 278 Ela~~GIRVNaVaPG~i~T~~~~~i-p~~~~~~~~~~~~m~r----------~G~pEdva~~v~~L~sd 335 (422)
T 3s8m_A 278 RLAKHGGGANVAVLKSVVTQASAAI-PVMPLYISMVYKIMKE----------KGLHEGTIEQLDRLFRE 335 (422)
T ss_dssp HHHTTTCEEEEEEECCCCCTTGGGS-THHHHHHHHHHHHHHH----------TTCCCCHHHHHHHHHHH
T ss_pred HhCccCEEEEEEEcCCCcChhhhcC-CCChHHHHHHHhhhcC----------CcChHHHHHHHHHHhcc
Confidence 74 89999999999988753221 11111 11122221 23457899999888764
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=136.30 Aligned_cols=215 Identities=10% Similarity=-0.059 Sum_probs=139.7
Q ss_pred CCCCeEEEECCccHHHHH--HHHHHHHCCCeEEEEecCCCCh------------hhhhhhhhccCCCCcEEEEEccCCCc
Q 020266 7 AAGKVVCVTGASGYIASW--LVKLLLSRGYTVKASVRDPNDP------------KKTRHLLALDGASERLQLFKANLLEE 72 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~~~~~~~~~~~~~Dl~~~ 72 (328)
..+|++|||||++.||.+ +++.|.+.|++|++++|+.... ..+....... ..++..+.+|++|+
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dvtd~ 135 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKK--GLVAKNFIEDAFSN 135 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTCH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHc--CCcEEEEEeeCCCH
Confidence 358999999999999999 9999999999999999976542 2222222222 34688999999999
Q ss_pred CchHHhhC-------CccEEEEccCCCC---------------C------------------------CCCCcchhhhhH
Q 020266 73 GSFDSIVD-------GCDGVCHTASPFY---------------H------------------------DAKDPQVELLDP 106 (328)
Q Consensus 73 ~~~~~~~~-------~~d~vih~a~~~~---------------~------------------------~~~~~~~~~~~~ 106 (328)
+++.++++ ++|++|||||... . ...+.+...+++
T Consensus 136 ~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~v 215 (418)
T 4eue_A 136 ETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKV 215 (418)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 88777664 5899999998630 0 112223345555
Q ss_pred HHHHHH-HHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHH
Q 020266 107 AVKGTL-NVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFA 182 (328)
Q Consensus 107 N~~~~~-~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~ 182 (328)
|..+.. .+++++.... +..++|.+||++...+.+ . .....|+.+|.+.+.+.+.++
T Consensus 216 n~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~p--~------------------~~~~aY~ASKaAL~~ltrsLA 275 (418)
T 4eue_A 216 MGGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTYK--I------------------YREGTIGIAKKDLEDKAKLIN 275 (418)
T ss_dssp HSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGTT--T------------------TTTSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCCC--c------------------cccHHHHHHHHHHHHHHHHHH
Confidence 655544 5555554321 235799999975443211 0 011459999999999999988
Q ss_pred Hh----cCccEEEEcCCcccCCCCC--CCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCCcE
Q 020266 183 KE----KSIDLVTINPAMVIGPLLQ--PTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRY 253 (328)
Q Consensus 183 ~~----~~~~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~ 253 (328)
.+ .|++++++.||.|-.+... +........+.+.++. .-..+|+++++..++...-.+|.+
T Consensus 276 ~ELa~~~GIrVN~V~PG~v~T~~s~~ip~~p~y~~~~~~~mk~----------~G~~E~v~e~~~~L~sd~~~~g~~ 342 (418)
T 4eue_A 276 EKLNRVIGGRAFVSVNKALVTKASAYIPTFPLYAAILYKVMKE----------KNIHENCIMQIERMFSEKIYSNEK 342 (418)
T ss_dssp HHHHHHHSCEEEEEECCCCCCHHHHTSTTHHHHHHHHHHHHHH----------TTCCCCHHHHHHHHHHHTTSSSSC
T ss_pred HHhCCccCeEEEEEECCcCcChhhhcCCCCcHHHHHHHHHHhh----------cCChHHHHHHHHHHhhccccCCCc
Confidence 76 5799999999999886321 1111111122222221 124568888888888754334433
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=146.91 Aligned_cols=169 Identities=15% Similarity=0.112 Sum_probs=121.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCe-EEEEecCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+|+++||||+|.||+++++.|+++|++ |++++|+..+........... ....++.++.+|++|.+++.++++
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 4789999999999999999999999987 777888866543222221111 123468889999999998877664
Q ss_pred -CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC-CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 81 -~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
.+|+||||||... ....+.+...+++|+.|+.++.+++... ...++||++||+++..|.+
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~------------- 2029 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNA------------- 2029 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCT-------------
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCC-------------
Confidence 5899999999632 2335567788999999999998877653 1347899999987766421
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccC
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIG 199 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G 199 (328)
....|+.+|...+.+.+.... .|++...+..+.+-+
T Consensus 2030 ---------g~~~Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A 2030 ---------GQANYGFANSAMERICEKRRH-DGLPGLAVQWGAIGD 2065 (2512)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHH-TTSCCCEEEECCBCT
T ss_pred ---------CcHHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcCC
Confidence 124599999999999987654 489999998887644
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-13 Score=142.84 Aligned_cols=230 Identities=20% Similarity=0.135 Sum_probs=145.8
Q ss_pred cCCCCeEEEECCccH-HHHHHHHHHHHCCCeEEEEecCCCC-----hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 6 AAAGKVVCVTGASGY-IASWLVKLLLSRGYTVKASVRDPND-----PKKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 6 ~~~~~~vlVtGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
.+++|+++||||++. ||+++++.|++.|++|++.+|+.+. ...+...+. ....++..+.+|++|++++.+++
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~--~~G~~~~~v~~Dvtd~~~v~~lv 2210 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHA--RFDATLWVVPANMASYSDIDKLV 2210 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHC--CTTCEEEEEECCTTCHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHh--hcCCeEEEEEecCCCHHHHHHHH
Confidence 367999999999999 9999999999999999999998765 222222221 12346788999999999877764
Q ss_pred C-----------CccEEEEccCC----CC------CCCCCcchhh----hhHHHHHHHHHHHHHhcCC---Cc---cEEE
Q 020266 80 D-----------GCDGVCHTASP----FY------HDAKDPQVEL----LDPAVKGTLNVLNSCAKFP---SI---KRVV 128 (328)
Q Consensus 80 ~-----------~~d~vih~a~~----~~------~~~~~~~~~~----~~~N~~~~~~l~~~~~~~~---~~---~~~v 128 (328)
+ ++|++|||||. .. ....+.+... +++|+.++..++.++.+.+ +. ..+|
T Consensus 2211 ~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii 2290 (3089)
T 3zen_D 2211 EWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVV 2290 (3089)
T ss_dssp HHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEE
Confidence 2 47999999996 11 1112223333 7889999888887765421 11 1222
Q ss_pred EecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh--c--CccEEEEcCCcccCCCCCC
Q 020266 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE--K--SIDLVTINPAMVIGPLLQP 204 (328)
Q Consensus 129 ~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~--~~~~~ilRp~~v~G~~~~~ 204 (328)
..+|.. ....+ ....|+.||.+.+.+.+.++.+ . +++++.+.||.+-+.....
T Consensus 2291 ~~~ss~-~g~~g----------------------~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~ 2347 (3089)
T 3zen_D 2291 LPGSPN-RGMFG----------------------GDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMG 2347 (3089)
T ss_dssp EEECSS-TTSCS----------------------SCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTT
T ss_pred EECCcc-cccCC----------------------CchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccc
Confidence 222211 11000 1134999999999999999988 3 5889999999987543211
Q ss_pred CCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCC---CC-cE--EEec---C-ccCHHHHHHHHH
Q 020266 205 TLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA---NG-RY--CLVE---R-VSHYSEIVNIIR 270 (328)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~---~g-~~--~~~~---~-~~~~~el~~~i~ 270 (328)
..... ....... + .....++|+|.++++++..... .+ .. .+.| . ...+.++...+.
T Consensus 2348 ~~~~~----~~~~~~~---~---~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~ 2413 (3089)
T 3zen_D 2348 QNDAI----VSAVEEA---G---VTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKAR 2413 (3089)
T ss_dssp TTTTT----HHHHGGG---S---CBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHH
T ss_pred cchhH----HHHHHhc---C---CCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHH
Confidence 11111 1111111 1 1233899999999998874311 22 22 2223 2 367888877553
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-12 Score=94.99 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=76.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
++|+|+|+|+ |++|+++++.|.+.| ++|++++|++++...+. ..++.++.+|+++.+.+.++++++|+||
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~d~vi 74 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN--------RMGVATKQVDAKDEAGLAKALGGFDAVI 74 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH--------TTTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--------hCCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence 3678999999 999999999999999 99999999865544322 2357788999999999999999999999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEec
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~S 131 (328)
|+++. . ....+++++.+. ++++|...+
T Consensus 75 ~~~~~----------~-------~~~~~~~~~~~~-g~~~~~~~~ 101 (118)
T 3ic5_A 75 SAAPF----------F-------LTPIIAKAAKAA-GAHYFDLTE 101 (118)
T ss_dssp ECSCG----------G-------GHHHHHHHHHHT-TCEEECCCS
T ss_pred ECCCc----------h-------hhHHHHHHHHHh-CCCEEEecC
Confidence 99852 1 135778888887 765544333
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-12 Score=111.72 Aligned_cols=174 Identities=13% Similarity=0.015 Sum_probs=116.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-------eEEEEecC----CCChhhhhhhhhccCCCCcEEEEEccCCCcCchHH
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRD----PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS 77 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 77 (328)
.|||+||||+||+|++++..|+..|+ +|.+++++ .++.......+.... ..+ .+|++...++.+
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~--~~~---~~~i~~~~~~~~ 79 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA--FPL---LAGMTAHADPMT 79 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT--CTT---EEEEEEESSHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc--ccc---cCcEEEecCcHH
Confidence 56899999999999999999998885 78888876 322222111111100 011 246665677888
Q ss_pred hhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020266 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD 156 (328)
Q Consensus 78 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 156 (328)
.++++|+|||+||......... .+.+..|+.+++++++++.+.+ ...+||++|.-...-. ....+..+.-
T Consensus 80 al~~aD~Vi~~ag~~~~~g~~r-~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t--------~~~~~~~~~~ 150 (329)
T 1b8p_A 80 AFKDADVALLVGARPRGPGMER-KDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNA--------YIAMKSAPSL 150 (329)
T ss_dssp HTTTCSEEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH--------HHHHHTCTTS
T ss_pred HhCCCCEEEEeCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHH--------HHHHHHcCCC
Confidence 8999999999999754433333 4788999999999999999873 3348999987321110 0000110000
Q ss_pred ccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC
Q 020266 157 PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (328)
Q Consensus 157 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~ 201 (328)
| +...|+.+++...++...+++..|++...++...|+|..
T Consensus 151 p-----~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H 190 (329)
T 1b8p_A 151 P-----AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNH 190 (329)
T ss_dssp C-----GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCS
T ss_pred C-----HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEecc
Confidence 0 113488888888888888888888877777777778853
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=104.95 Aligned_cols=117 Identities=16% Similarity=0.098 Sum_probs=81.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
++|||+||||+||+|..++..|+..| ++|+++++++. ......+.. ......+.. +.+..++.++++++|+|
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~dL~~-~~~~~~v~~----~~~t~d~~~al~gaDvV 80 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTADISH-MDTGAVVRG----FLGQQQLEAALTGMDLI 80 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHHHHT-SCSSCEEEE----EESHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHHhhc-ccccceEEE----EeCCCCHHHHcCCCCEE
Confidence 45789999999999999999999998 89999988764 111111111 111112222 22234677888999999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
||+|+........ ..+....|+.+++++++++.+. +.+.+|+++|
T Consensus 81 i~~ag~~~~~g~~-r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~S 125 (326)
T 1smk_A 81 IVPAGVPRKPGMT-RDDLFKINAGIVKTLCEGIAKC-CPRAIVNLIS 125 (326)
T ss_dssp EECCCCCCCSSCC-CSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred EEcCCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEEC
Confidence 9999965433222 2377889999999999999997 5556777776
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-10 Score=98.05 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=101.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC--eEEEEec--CCCChhhhhhhh-hc-cCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVR--DPNDPKKTRHLL-AL-DGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~-~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
|||+||||+||+|++++..|+..|. ++..+++ +.++.+.....+ .. ......+++..++ +++.+.++++|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al~gaD 76 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRIIDESD 76 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGGTTCS
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHhCCCC
Confidence 4799999999999999999998874 5777777 332222111111 01 1111122332221 23566789999
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
+|||+||........ ..+.++.|+.+++++++++++. + +.+|+++| .-+.. ...........+ +
T Consensus 77 ~Vi~~Ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~-~-~~~vlv~S-NPv~~-----~t~~~~k~~~~p-------~ 140 (313)
T 1hye_A 77 VVIITSGVPRKEGMS-RMDLAKTNAKIVGKYAKKIAEI-C-DTKIFVIT-NPVDV-----MTYKALVDSKFE-------R 140 (313)
T ss_dssp EEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHH-C-CCEEEECS-SSHHH-----HHHHHHHHHCCC-------T
T ss_pred EEEECCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEec-CcHHH-----HHHHHHHhhCcC-------h
Confidence 999999975443333 3478899999999999999998 5 66677666 21210 000001111010 1
Q ss_pred Cchhhh-hhHHHHHHHHHHHHhcCccEEEEcCCcccCC
Q 020266 164 ELWYPL-SKTLAEDAAWKFAKEKSIDLVTINPAMVIGP 200 (328)
Q Consensus 164 ~~~Y~~-sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~ 200 (328)
...+|. +.+...++....++..|++..-++. .++|.
T Consensus 141 ~rviG~gt~LD~~r~~~~la~~lgv~~~~v~~-~v~G~ 177 (313)
T 1hye_A 141 NQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIGE 177 (313)
T ss_dssp TSEEECTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEEC
T ss_pred hcEEEeCccHHHHHHHHHHHHHhCcCHHHeEE-EEeec
Confidence 134676 6666777777777777776555554 45663
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=100.42 Aligned_cols=114 Identities=16% Similarity=0.041 Sum_probs=76.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC--eEEEEec--CCCChhhhhhhh-hccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVR--DPNDPKKTRHLL-ALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
|||+||||+||+|++++..|+..|+ ++..+++ ++++.+.....+ ........++... + + .+.++++|+
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDv 73 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTAGSDV 73 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhCCCCE
Confidence 4799999999999999999998875 6777777 433222211111 1100112333332 2 1 445789999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|||+|+........ ..+.+..|+.+++++++++.+. +.+.+|+++|
T Consensus 74 Vi~~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~S 119 (303)
T 1o6z_A 74 VVITAGIPRQPGQT-RIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTS 119 (303)
T ss_dssp EEECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECC
T ss_pred EEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeC
Confidence 99999975433333 2377899999999999999998 5666777776
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-10 Score=99.72 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=67.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+++|+++||||+|++|+++++.|++.|++|++++|+.++...+...+... .++.++.+|+++++++.++++.+|+||
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~DvlV 193 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVKGAHFVF 193 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEecCCCHHHHHHHHHhCCEEE
Confidence 46789999999999999999999999999999999876555444333211 135677899999999999999999999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
|+|+.
T Consensus 194 n~ag~ 198 (287)
T 1lu9_A 194 TAGAI 198 (287)
T ss_dssp ECCCT
T ss_pred ECCCc
Confidence 99974
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=82.97 Aligned_cols=102 Identities=17% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~v 85 (328)
+++++|+|+|+ |.+|+.+++.|.+.|++|++++|+++..+.+.. .....+.+|.++++.+.++ ++++|+|
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~--------~~~~~~~~d~~~~~~l~~~~~~~~d~v 74 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--------YATHAVIANATEENELLSLGIRNFEYV 74 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT--------TCSEEEECCTTCHHHHHTTTGGGCSEE
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------hCCEEEEeCCCCHHHHHhcCCCCCCEE
Confidence 45778999998 999999999999999999999987544332111 1346678999887777665 6789999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
|++++.. .+.|. .+.+.+++. +.+++|..++.
T Consensus 75 i~~~~~~-----------~~~~~----~~~~~~~~~-~~~~ii~~~~~ 106 (144)
T 2hmt_A 75 IVAIGAN-----------IQAST----LTTLLLKEL-DIPNIWVKAQN 106 (144)
T ss_dssp EECCCSC-----------HHHHH----HHHHHHHHT-TCSEEEEECCS
T ss_pred EECCCCc-----------hHHHH----HHHHHHHHc-CCCeEEEEeCC
Confidence 9988631 12333 345566666 55677776663
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-08 Score=89.34 Aligned_cols=171 Identities=12% Similarity=-0.021 Sum_probs=107.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHH-HCCCeEEEEecCCCChhh------------hhhhhhccCCCCcEEEEEccCCCcCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLL-SRGYTVKASVRDPNDPKK------------TRHLLALDGASERLQLFKANLLEEGS 74 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~------------~~~~~~~~~~~~~~~~~~~Dl~~~~~ 74 (328)
.+|++|||||+..+|.+.+..|+ ..|..|+++.+..+..+. ..+..... ..+...+.+|+++++.
T Consensus 49 ~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~--G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 49 APKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKRE--GLYSVTIDGDAFSDEI 126 (401)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHH--TCCEEEEESCTTSHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHc--CCCceeEeCCCCCHHH
Confidence 47999999999999999999998 579999999886543321 11122222 3478899999999998
Q ss_pred hHHhhC-------CccEEEEccCCCCCCC--------------------------CCcc-----hhhhhHHHHHHHHH--
Q 020266 75 FDSIVD-------GCDGVCHTASPFYHDA--------------------------KDPQ-----VELLDPAVKGTLNV-- 114 (328)
Q Consensus 75 ~~~~~~-------~~d~vih~a~~~~~~~--------------------------~~~~-----~~~~~~N~~~~~~l-- 114 (328)
+.++++ ++|++||++|...... .+.. ..+-+.++.+|..+
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg 206 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG 206 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence 877775 6899999998532110 0000 00112233333322
Q ss_pred -------HHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh
Q 020266 115 -------LNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184 (328)
Q Consensus 115 -------~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~ 184 (328)
+.+.... ....++|.+|+.+.--. .|.+....+|..|..-|..++..+.+
T Consensus 207 ~s~~s~w~~al~~a~lla~G~siva~SYiGse~t--------------------~P~Y~~G~mG~AKaaLEa~~r~La~e 266 (401)
T 4ggo_A 207 GEDWERWIKQLSKEGLLEEGCITLAYSYIGPEAT--------------------QALYRKGTIGKAKEHLEATAHRLNKE 266 (401)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGG--------------------HHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhcccCCceEEEEeccCccee--------------------ecCCCccHHHHHHHHHHHHHHHHHHh
Confidence 2222222 12346888887543210 00011224899999999999999887
Q ss_pred c-CccEEEEcCCcccCC
Q 020266 185 K-SIDLVTINPAMVIGP 200 (328)
Q Consensus 185 ~-~~~~~ilRp~~v~G~ 200 (328)
. ++++.++-++.+...
T Consensus 267 L~~~~a~v~v~~a~vT~ 283 (401)
T 4ggo_A 267 NPSIRAFVSVNKGLVTR 283 (401)
T ss_dssp CTTEEEEEEECCCCCCT
T ss_pred cCCCcEEEEEcCccccc
Confidence 5 567777667666654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-09 Score=82.13 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~v 85 (328)
++|++|+|+|+ |.+|+++++.|.+.|++|++++++++..+.+.. ..+.++.+|.++++.+.++ ++++|+|
T Consensus 4 ~~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~~d~v 74 (141)
T 3llv_A 4 NGRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED--------EGFDAVIADPTDESFYRSLDLEGVSAV 74 (141)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--------CCCcEEECCCCCHHHHHhCCcccCCEE
Confidence 34678999998 999999999999999999999998665444322 2467889999999888765 4579999
Q ss_pred EEccC
Q 020266 86 CHTAS 90 (328)
Q Consensus 86 ih~a~ 90 (328)
|.+.+
T Consensus 75 i~~~~ 79 (141)
T 3llv_A 75 LITGS 79 (141)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 98764
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-09 Score=97.30 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=76.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|++|+|+|+| +|++|+++++.|++.|++|++.+|+.++...+... ..++..+.+|++|.+++.++++++|+||
T Consensus 1 M~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~------~~~~~~~~~Dv~d~~~l~~~l~~~DvVI 73 (450)
T 1ff9_A 1 MATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG------VQHSTPISLDVNDDAALDAEVAKHDLVI 73 (450)
T ss_dssp -CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTT------CTTEEEEECCTTCHHHHHHHHTTSSEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHh------cCCceEEEeecCCHHHHHHHHcCCcEEE
Confidence 3478999998 79999999999999999999999986554432221 1247788999999988989999999999
Q ss_pred EccCCCCCCC-CCc-c---hhhhhH--HHHHHHHHHHHHhcCCCc
Q 020266 87 HTASPFYHDA-KDP-Q---VELLDP--AVKGTLNVLNSCAKFPSI 124 (328)
Q Consensus 87 h~a~~~~~~~-~~~-~---~~~~~~--N~~~~~~l~~~~~~~~~~ 124 (328)
|+++...... ... . ..++.. ....+.+++++|++. ++
T Consensus 74 n~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~a-Gv 117 (450)
T 1ff9_A 74 SLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDA-GI 117 (450)
T ss_dssp ECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHT-TC
T ss_pred ECCccccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHC-CC
Confidence 9998632110 000 0 001111 123567888999887 55
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.1e-08 Score=83.95 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=80.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
|||.|+||+|++|..++..|+..| ++|.++++++ .......+.......++..+.+ ..+++++++++|+||+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~----t~d~~~a~~~aDvVvi 74 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLG----PEQLPDCLKGCDVVVI 74 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEES----GGGHHHHHTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecC----CCCHHHHhCCCCEEEE
Confidence 479999999999999999999888 7899999987 2221111111111112222211 1357778899999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+|+......... .+.+..|+..++.+++.+.+.....++|++|-
T Consensus 75 ~ag~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 75 PAGVPRKPGMTR-DDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp CCSCCCCTTCCG-GGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCCcCCCCCCcH-HHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 998754433333 37788999999999999888644447777755
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.75 E-value=6.2e-08 Score=73.74 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=57.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih 87 (328)
+|+|+|+|+ |++|+.+++.|.+.|++|++++|+++....+... .++..+.+|.++++.+.+. ++++|+||+
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-------IDALVINGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------CSSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh-------cCcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence 568999987 9999999999999999999999976544332221 1456788999887766644 678999999
Q ss_pred ccC
Q 020266 88 TAS 90 (328)
Q Consensus 88 ~a~ 90 (328)
+..
T Consensus 76 ~~~ 78 (140)
T 1lss_A 76 VTG 78 (140)
T ss_dssp CCS
T ss_pred eeC
Confidence 864
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-08 Score=92.15 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=66.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC---CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--cc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d 83 (328)
|++|+|+|| |++|+.+++.|++.| .+|.+.+|+.++...+...+.... ..++..+.+|++|.+++.+++++ +|
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D 78 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ 78 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence 468999999 999999999999998 389999998877766555443221 23688899999999999999986 89
Q ss_pred EEEEccCC
Q 020266 84 GVCHTASP 91 (328)
Q Consensus 84 ~vih~a~~ 91 (328)
+|||++++
T Consensus 79 vVin~ag~ 86 (405)
T 4ina_A 79 IVLNIALP 86 (405)
T ss_dssp EEEECSCG
T ss_pred EEEECCCc
Confidence 99999874
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.1e-08 Score=86.66 Aligned_cols=118 Identities=18% Similarity=0.059 Sum_probs=78.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC--e-----EEEEecCCC--ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY--T-----VKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~-----V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
.++|+||||+|+||++++..|+..|. + +..+++.+. ..+.....+.... .+-. .++.......+.+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~-~~~~----~~~~~~~~~~~~~ 77 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA-LPLL----KDVIATDKEEIAF 77 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC-CTTE----EEEEEESCHHHHT
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhh-hccc----CCEEEcCCcHHHh
Confidence 46899999999999999999988764 4 788887542 2222211111110 0111 1222234566778
Q ss_pred CCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCcc-EEEEecc
Q 020266 80 DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTSS 132 (328)
Q Consensus 80 ~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~v~~SS 132 (328)
+++|+|||+||........ ..+.++.|+..++.+++++.+.+... +++.+|-
T Consensus 78 ~daDvVvitAg~prkpG~t-R~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 78 KDLDVAILVGSMPRRDGME-RKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp TTCSEEEECCSCCCCTTCC-TTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 8999999999865433332 34788999999999999999873223 5777776
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.62 E-value=9.9e-08 Score=83.64 Aligned_cols=121 Identities=7% Similarity=-0.007 Sum_probs=80.0
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhC
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
..-|+++||.|+|++|++|+.++..|+..| .+|.++++++++.+.....+... ....++. -..++.+.++
T Consensus 3 ~~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~-------~t~d~~~al~ 75 (343)
T 3fi9_A 3 LSYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLT-------FTSDIKEALT 75 (343)
T ss_dssp CCCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCE-------EESCHHHHHT
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceE-------EcCCHHHHhC
Confidence 344567899999999999999999999988 58999998765444322211111 1111222 1245667788
Q ss_pred CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCcc-EEEEecc
Q 020266 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK-RVVLTSS 132 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~v~~SS 132 (328)
++|+||.+||........ ..+.++.|+...+.+.+.+.+..... .++.+|-
T Consensus 76 dADvVvitaG~p~kpG~~-R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 76 DAKYIVSSGGAPRKEGMT-REDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp TEEEEEECCC-------C-HHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred CCCEEEEccCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 999999999874433222 34778899999999999998873333 3566665
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.61 E-value=8.8e-08 Score=74.34 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=60.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~ 84 (328)
|..++|+|+|+ |.+|+.+++.|.+.|++|+++++++ +..+.+.... ..++.++.||.++++.+.++ ++++|+
T Consensus 1 ~~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~ad~ 74 (153)
T 1id1_A 1 HRKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRA 74 (153)
T ss_dssp CCCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhCCE
Confidence 34568999996 9999999999999999999999974 3232322221 23588999999999988876 789999
Q ss_pred EEEccC
Q 020266 85 VCHTAS 90 (328)
Q Consensus 85 vih~a~ 90 (328)
||-+.+
T Consensus 75 vi~~~~ 80 (153)
T 1id1_A 75 ILALSD 80 (153)
T ss_dssp EEECSS
T ss_pred EEEecC
Confidence 998764
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.9e-08 Score=78.67 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=52.8
Q ss_pred CCCeEEEECC----------------ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCC
Q 020266 8 AGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71 (328)
Q Consensus 8 ~~~~vlVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 71 (328)
++|+|||||| ||.+|.+++++|+++|++|+.+.|....... ...++..+ |+.+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~---------~~~~~~~~--~v~s 70 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE---------PHPNLSIR--EITN 70 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC---------CCTTEEEE--ECCS
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc---------CCCCeEEE--EHhH
Confidence 4789999999 9999999999999999999999996532110 01245444 3333
Q ss_pred cCc----hHHhhCCccEEEEccCCC
Q 020266 72 EGS----FDSIVDGCDGVCHTASPF 92 (328)
Q Consensus 72 ~~~----~~~~~~~~d~vih~a~~~ 92 (328)
.++ +.+.+.++|++||+||..
T Consensus 71 ~~em~~~v~~~~~~~Dili~aAAvs 95 (232)
T 2gk4_A 71 TKDLLIEMQERVQDYQVLIHSMAVS 95 (232)
T ss_dssp HHHHHHHHHHHGGGCSEEEECSBCC
T ss_pred HHHHHHHHHHhcCCCCEEEEcCccc
Confidence 332 333445799999999974
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-07 Score=69.85 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=58.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vi 86 (328)
.+++|+|+|+ |.+|..+++.|.+.|++|++++|+++....+.. ..+...+.+|.++++.+.+. ++++|+||
T Consensus 18 ~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~-------~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 18 KSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS-------EFSGFTVVGDAAEFETLKECGMEKADMVF 89 (155)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT-------TCCSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh-------cCCCcEEEecCCCHHHHHHcCcccCCEEE
Confidence 4678999996 999999999999999999999998765443210 12456778898887666654 66899999
Q ss_pred EccC
Q 020266 87 HTAS 90 (328)
Q Consensus 87 h~a~ 90 (328)
.+.+
T Consensus 90 ~~~~ 93 (155)
T 2g1u_A 90 AFTN 93 (155)
T ss_dssp ECSS
T ss_pred EEeC
Confidence 8875
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.56 E-value=8e-08 Score=85.68 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=71.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
.|||+|.|| |++|+.++++|.+ .++|.+.+|+.++.+.+ .+.+..+..|+.|.+++.++++++|+||++
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~---------~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~ 84 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKV---------KEFATPLKVDASNFDKLVEVMKEFELVIGA 84 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHH---------TTTSEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred ccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH---------hccCCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence 457999998 9999999998865 58999999876554432 134667889999999999999999999998
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEec
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~S 131 (328)
+++. + + ..++++|.+. ++ ++|=+|
T Consensus 85 ~p~~-----------~--~----~~v~~~~~~~-g~-~yvD~s 108 (365)
T 3abi_A 85 LPGF-----------L--G----FKSIKAAIKS-KV-DMVDVS 108 (365)
T ss_dssp CCGG-----------G--H----HHHHHHHHHH-TC-EEEECC
T ss_pred cCCc-----------c--c----chHHHHHHhc-Cc-ceEeee
Confidence 8641 1 1 3577888886 53 666655
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=76.90 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=54.7
Q ss_pred cCCCCeEEEECC----------------ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccC
Q 020266 6 AAAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69 (328)
Q Consensus 6 ~~~~~~vlVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 69 (328)
.+++|+|||||| ||.+|.+++++|+++|++|++++++..- .. ..++. ..|+
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l-~~----------~~g~~--~~dv 71 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL-PT----------PPFVK--RVDV 71 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC-CC----------CTTEE--EEEC
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCccc-cc----------CCCCe--EEcc
Confidence 467899999999 7999999999999999999999876421 10 11333 3577
Q ss_pred CCcCchHHh----hCCccEEEEccCCC
Q 020266 70 LEEGSFDSI----VDGCDGVCHTASPF 92 (328)
Q Consensus 70 ~~~~~~~~~----~~~~d~vih~a~~~ 92 (328)
++.+++.+. +.++|++||+||..
T Consensus 72 ~~~~~~~~~v~~~~~~~Dili~~Aav~ 98 (226)
T 1u7z_A 72 MTALEMEAAVNASVQQQNIFIGCAAVA 98 (226)
T ss_dssp CSHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred CcHHHHHHHHHHhcCCCCEEEECCccc
Confidence 765544333 34689999999963
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.9e-08 Score=88.89 Aligned_cols=78 Identities=15% Similarity=0.251 Sum_probs=62.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
.+++++|+|+|| |++|+++++.|++. |++|.+.+|+.++...+... .++..+.+|+.|.+++.++++++|+
T Consensus 20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-------~~~~~~~~D~~d~~~l~~~l~~~Dv 91 (467)
T 2axq_A 20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-------SGSKAISLDVTDDSALDKVLADNDV 91 (467)
T ss_dssp ---CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-------GTCEEEECCTTCHHHHHHHHHTSSE
T ss_pred CCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-------cCCcEEEEecCCHHHHHHHHcCCCE
Confidence 345789999997 99999999999998 78999999987665543322 1456778999998888888899999
Q ss_pred EEEccCC
Q 020266 85 VCHTASP 91 (328)
Q Consensus 85 vih~a~~ 91 (328)
|||+++.
T Consensus 92 VIn~tp~ 98 (467)
T 2axq_A 92 VISLIPY 98 (467)
T ss_dssp EEECSCG
T ss_pred EEECCch
Confidence 9999875
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=7.7e-07 Score=77.43 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=70.4
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHH
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDS 77 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 77 (328)
|.+...+.+++|.|+|+ |.+|..++..|+..|. +|.++++++++.+.....+... .....+....+| .+
T Consensus 1 ~~~~~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~-------~~ 72 (326)
T 3vku_A 1 MASITDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE-------YS 72 (326)
T ss_dssp ------CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC-------GG
T ss_pred CcccccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc-------HH
Confidence 56666777889999996 9999999999998886 8999999765544322222111 111233433332 23
Q ss_pred hhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 78 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
.++++|+||.+||........ ..+.++.|+.-.+.+.+.+.+......++.+|-
T Consensus 73 a~~~aDiVvi~ag~~~kpG~t-R~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 73 DAKDADLVVITAGAPQKPGET-RLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp GGTTCSEEEECCCCC-----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred HhcCCCEEEECCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 577899999999864332222 237788999999999999988744445666664
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.2e-06 Score=73.63 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=79.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhh-ccC-CCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLA-LDG-ASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
++++|.|+|+ |++|..++..|+..|. +|.++++++++.+.....+. ..+ ....+....+| .+.++++|
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~-------~~a~~~aD 75 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT-------YEDCKDAD 75 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC-------GGGGTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc-------HHHhCCCC
Confidence 3678999996 9999999999999886 89999997665444221111 111 11234443333 23577899
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+||.+||........ ..+.++.|+...+.+.+.+.+......++.+|-
T Consensus 76 vVvi~ag~p~kpG~~-R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 76 IVCICAGANQKPGET-RLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp EEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred EEEEecccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 999999864433222 347788999999999999988744345666665
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=69.52 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=59.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh--hCCccE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI--VDGCDG 84 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~--~~~~d~ 84 (328)
.+++|+|+| .|.+|..+++.|.+. |++|++++++++....+.. .++..+.+|.++++.+.++ ++++|+
T Consensus 38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~--------~g~~~~~gd~~~~~~l~~~~~~~~ad~ 108 (183)
T 3c85_A 38 GHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS--------EGRNVISGDATDPDFWERILDTGHVKL 108 (183)
T ss_dssp TTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH--------TTCCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH--------CCCCEEEcCCCCHHHHHhccCCCCCCE
Confidence 356899999 599999999999999 9999999998765444322 2466788999988877776 778999
Q ss_pred EEEccC
Q 020266 85 VCHTAS 90 (328)
Q Consensus 85 vih~a~ 90 (328)
||.+.+
T Consensus 109 vi~~~~ 114 (183)
T 3c85_A 109 VLLAMP 114 (183)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 998764
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-05 Score=70.52 Aligned_cols=122 Identities=19% Similarity=0.137 Sum_probs=78.7
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhh----hccCCCCcEEEEEccCCCcCch
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLL----ALDGASERLQLFKANLLEEGSF 75 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~ 75 (328)
|+++...+.|+|.|+|| |.+|..++..|+..|+ +|.+++++++..+.....+ .......++.. ..++
T Consensus 1 ~~~~~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-------t~d~ 72 (331)
T 1pzg_A 1 MAPALVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-------EYSY 72 (331)
T ss_dssp --CCCCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-------ECSH
T ss_pred CCcCcCCCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-------eCCH
Confidence 55544444678999998 9999999999999998 9999999876554421111 11111122322 1346
Q ss_pred HHhhCCccEEEEccCCCCCCCC-----CcchhhhhHHHHHHHHHHHHHhcCCCccEEEEec
Q 020266 76 DSIVDGCDGVCHTASPFYHDAK-----DPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (328)
Q Consensus 76 ~~~~~~~d~vih~a~~~~~~~~-----~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~S 131 (328)
.+.++++|+||-+++....... .. .+....|+.-.+.+++.+.+......+|.+|
T Consensus 73 ~ea~~~aDiVi~a~g~p~~~g~~~~~~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 73 EAALTGADCVIVTAGLTKVPGKPDSEWSR-NDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp HHHHTTCSEEEECCSCSSCTTCCGGGCCG-GGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred HHHhCCCCEEEEccCCCCCCCcccCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 6678899999999976433222 22 3667788888899998888763223344443
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.9e-07 Score=72.91 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=59.6
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 88 (328)
|+|+|+|+ |.+|+++++.|.+.|++|++++++++..+.+... .++.++.+|.++++.+.++ ++++|+||-+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 72 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-------LKATIIHGDGSHKEILRDAEVSKNDVVVIL 72 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-------SSSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------cCCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence 47999996 9999999999999999999999987665543322 2567899999999888876 6789999966
Q ss_pred cC
Q 020266 89 AS 90 (328)
Q Consensus 89 a~ 90 (328)
.+
T Consensus 73 ~~ 74 (218)
T 3l4b_C 73 TP 74 (218)
T ss_dssp CS
T ss_pred cC
Confidence 43
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-06 Score=66.13 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=59.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih 87 (328)
.++|+|.|+ |.+|+.+++.|.+.|++|++++++++..+.+.. .++..+.||.++++.+.++ ++++|+||-
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--------~g~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE--------RGVRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------cCCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 457999996 999999999999999999999998766554332 2578899999998877764 567899987
Q ss_pred ccC
Q 020266 88 TAS 90 (328)
Q Consensus 88 ~a~ 90 (328)
+.+
T Consensus 78 ~~~ 80 (140)
T 3fwz_A 78 TIP 80 (140)
T ss_dssp CCS
T ss_pred ECC
Confidence 654
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.4e-05 Score=69.51 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=77.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhh----ccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLA----LDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
+|++++|.|+|+ |.+|..++..|+..|+ +|..+++++++.+.....+. ......++.. ..| . +.++
T Consensus 4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d------~-~a~~ 74 (324)
T 3gvi_A 4 SMARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-AND------Y-AAIE 74 (324)
T ss_dssp --CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESS------G-GGGT
T ss_pred CCcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eCC------H-HHHC
Confidence 356789999998 9999999999999998 99999998876543221111 1111123322 122 2 4678
Q ss_pred CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
++|+||.+||......... .+.+..|+.-.+.+.+.+.+......+|.+|-
T Consensus 75 ~aDiVIiaag~p~k~G~~R-~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 75 GADVVIVTAGVPRKPGMSR-DDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp TCSEEEECCSCCCC------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCEEEEccCcCCCCCCCH-HHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 8999999998644332222 36788899999999998888733346666665
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-06 Score=74.11 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=44.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHH-CCCeEEEE-ecCCCCh--hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLS-RGYTVKAS-VRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~-~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
++++|.|+|++|.+|+.+++.+.+ .|+++.+. +++.+.. .......... ..++...+++.+++.++|
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~---------~~~v~~~~dl~~~l~~~D 74 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG---------KTGVTVQSSLDAVKDDFD 74 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS---------CCSCCEESCSTTTTTSCS
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCC---------cCCceecCCHHHHhcCCC
Confidence 456899999999999999999886 47887754 4443321 1111110000 011221233445556789
Q ss_pred EEEEccC
Q 020266 84 GVCHTAS 90 (328)
Q Consensus 84 ~vih~a~ 90 (328)
+||+++.
T Consensus 75 vVIDft~ 81 (273)
T 1dih_A 75 VFIDFTR 81 (273)
T ss_dssp EEEECSC
T ss_pred EEEEcCC
Confidence 9998874
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.8e-05 Score=68.42 Aligned_cols=174 Identities=16% Similarity=0.075 Sum_probs=98.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHC-C--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSR-G--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~-g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|||.|+||+|.+|..++..|..+ + .++..+++.+ ..+.....+.......++..+.+ .+..+.++++|+||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~-----~~~~~~~~~aDivi 74 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSG-----EDATPALEGADVVL 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECS-----SCCHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecC-----CCcHHHhCCCCEEE
Confidence 57999999999999999988775 4 5788888876 33322222211111112222211 12345678999999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
-+||........ ..+.++.|+.-.+.+.+.+.+......++.+|--......- ............ +...
T Consensus 75 i~ag~~rkpG~~-R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~----a~~~~k~sg~~p------~~rv 143 (312)
T 3hhp_A 75 ISAGVARKPGMD-RSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAI----AAEVLKKAGVYD------KNKL 143 (312)
T ss_dssp ECCSCSCCTTCC-HHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHH----HHHHHHHTTCCC------TTSE
T ss_pred EeCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHH----HHHHHHHcCCCC------cceE
Confidence 999875433333 34888999999999999988763334666666421111000 000001110000 0122
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~ 201 (328)
.|.+-+..-++....++..|++..-++ +.|.|..
T Consensus 144 ~G~~~LD~~R~~~~la~~lgv~~~~v~-~~V~G~H 177 (312)
T 3hhp_A 144 FGVTTLDIIRSNTFVAELKGKQPGEVE-VPVIGGH 177 (312)
T ss_dssp EECCHHHHHHHHHHHHHHHTCCGGGCC-CCEEECS
T ss_pred EEEechhHHHHHHHHHHHhCcChhHcc-eeEEecc
Confidence 445533344555555666677666666 6677765
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.6e-05 Score=67.63 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=71.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhc----cCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
++|.|+|| |.+|..++..|+..|+ +|.++++++++.+.....+.. .....++... .++ +.++++|+
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-------~d~-~a~~~aD~ 73 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT-------NNY-ADTANSDV 73 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE-------SCG-GGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC-------CCH-HHHCCCCE
Confidence 68999998 9999999999999996 888888887655432221111 0111222221 223 45788999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
||.+++......... .+....|+...+.+.+.+.+. ....+|.+.|
T Consensus 74 Vi~a~g~p~~~g~~r-~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~t 119 (309)
T 1ur5_A 74 IVVTSGAPRKPGMSR-EDLIKVNADITRACISQAAPL-SPNAVIIMVN 119 (309)
T ss_dssp EEECCCC---------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECC
T ss_pred EEEcCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcC
Confidence 999998643322222 256778999999999999887 3444444444
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.1e-05 Score=68.42 Aligned_cols=116 Identities=19% Similarity=0.100 Sum_probs=78.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhc----cCCCCcEEEEEccCCCcCchHHhhCC
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDG 81 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (328)
|++++|.|+|+ |.+|..++..|+..|. +|..+++++++.+.....+.. .....++.. ..| .+.+++
T Consensus 3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~-t~d-------~~a~~~ 73 (321)
T 3p7m_A 3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG-TND-------YKDLEN 73 (321)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-ESC-------GGGGTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE-cCC-------HHHHCC
Confidence 45678999995 9999999999999887 999999988765432222111 111122321 112 246788
Q ss_pred ccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+|+||.+|+........ ..+.+..|+...+.+.+.+.+......+|.+|-
T Consensus 74 aDvVIi~ag~p~k~G~~-R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 74 SDVVIVTAGVPRKPGMS-RDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp CSEEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCEEEEcCCcCCCCCCC-HHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 99999999864433332 347788899999999999888743346666654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.3e-05 Score=68.24 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=71.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
++||.|+|+ |.+|..++-.|+..|. +|.++++++++.+.....+... .....+++.. .+ .+.++++|+|
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~----~~a~~~aDvV 78 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA---GD----YSDVKDCDVI 78 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGGTTCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE---CC----HHHhCCCCEE
Confidence 568999998 9999999999999887 8999999876554322222111 1112333321 12 3357889999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEec
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~S 131 (328)
|.+++........ ..+....|+.....+.+.+.+......+|.+|
T Consensus 79 ii~~g~p~k~g~~-r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 79 VVTAGANRKPGET-RLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp EECCCC------C-HHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EEcCCCCCCCCcC-HHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 9999864432222 23667889999999999988763333455543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.1e-06 Score=69.50 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=65.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh---C--Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---D--GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~--~~ 82 (328)
.+++|+|+||+|.||..+++.+...|++|++++|++++.+.... .+ .. ...|.++.+....+. . ++
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g----~~-~~~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LG----VE-YVGDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TC----CS-EEEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cC----CC-EEeeCCcHHHHHHHHHHhCCCCC
Confidence 47899999999999999999999999999999987554333211 11 11 124666655433332 2 58
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
|+||++++. .. ....++.+++. +++|.+++..
T Consensus 109 D~vi~~~g~----------~~-------~~~~~~~l~~~---G~~v~~g~~~ 140 (198)
T 1pqw_A 109 DVVLNSLAG----------EA-------IQRGVQILAPG---GRFIELGKKD 140 (198)
T ss_dssp EEEEECCCT----------HH-------HHHHHHTEEEE---EEEEECSCGG
T ss_pred eEEEECCch----------HH-------HHHHHHHhccC---CEEEEEcCCC
Confidence 999999862 11 23344444443 5899998853
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.7e-05 Score=66.75 Aligned_cols=113 Identities=11% Similarity=0.020 Sum_probs=77.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhh----hhhhccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTR----HLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
|+|.|+|+ |.+|..++..|+..|+ +|..++++++..+... +.........++.. . .+ .+.++++|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~--t-----~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG--G-----AD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE--E-----SC-GGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE--e-----CC-HHHhCCCC
Confidence 47999999 9999999999999887 8999999876544211 11110111112222 1 12 44678899
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+||.+|+........ ..+.+..|+.-.+.+.+.+.+......++.+|-
T Consensus 72 iVViaag~~~kpG~~-R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 72 IIVVTAGLARKPGMT-RLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCCCCCSSCC-HHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEECCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 999999875433232 347788999999999999988844456777765
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.4e-05 Score=68.01 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=75.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhh-cc-CCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLA-LD-GASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
|++++|.|+|| |.+|..++..|+..| .+|..+++++++.+.....+. .. .....+++.. | + .+.++++
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~~~a 75 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDCHDA 75 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHhCCC
Confidence 44678999998 999999999999887 489999887544332111111 01 1112333332 2 1 3457899
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|+||-+++........ ..+.+..|+.-.+.+.+.+.+......+|.+|-
T Consensus 76 DvVvi~ag~~~~~g~~-r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 124 (317)
T 3d0o_A 76 DLVVICAGAAQKPGET-RLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN 124 (317)
T ss_dssp SEEEECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CEEEECCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 9999999874433222 236678899999999998888733345555443
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-05 Score=68.50 Aligned_cols=116 Identities=18% Similarity=0.100 Sum_probs=77.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCC--CChhhhhhhhh----ccCCCCcEEEEEccCCCcCchHHhh
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP--NDPKKTRHLLA----LDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~--~~~~~~~~~~~----~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
|++++|.|+|+ |.+|..++..|+..|+ +|.++++++ ...+.....+. ......++... .| .+.+
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t-~d-------~~a~ 76 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT-SD-------YADT 76 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE-SC-------GGGG
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc-CC-------HHHh
Confidence 34678999996 9999999999999999 999999983 33332211110 00111223221 11 2357
Q ss_pred CCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 80 DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 80 ~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+++|+||-+||......... .+.++.|+.-.+.+.+.+.+......++.+|-
T Consensus 77 ~~aDvVIiaag~p~kpg~~R-~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 77 ADSDVVVITAGIARKPGMSR-DDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp TTCSEEEECCSCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEeCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 78999999998754433333 47888999999999999887633346677765
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.9e-06 Score=70.56 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=51.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|+|+||+|++|+.+++.|++.|++|.+++|++++.+.+......... .+|+. ..++.++++++|+||++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~D~Vi~~~ 72 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAG-------DASIT-GMKNEDAAEACDIAVLTI 72 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHS-------SCCEE-EEEHHHHHHHCSEEEECS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccc-------cCCCC-hhhHHHHHhcCCEEEEeC
Confidence 4799999999999999999999999999999986655443332110000 02222 245666777899999986
Q ss_pred C
Q 020266 90 S 90 (328)
Q Consensus 90 ~ 90 (328)
.
T Consensus 73 ~ 73 (212)
T 1jay_A 73 P 73 (212)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.7e-06 Score=70.78 Aligned_cols=81 Identities=12% Similarity=0.079 Sum_probs=57.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCC---CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP---NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
.++|+++|+|+ |.+|++++..|.+.|. +|.+..|+. ++...+...+.... .......++.+.+++.+.+.++
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~---~~~~~~~~~~~~~~l~~~l~~a 227 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT---DCKAQLFDIEDHEQLRKEIAES 227 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS---SCEEEEEETTCHHHHHHHHHTC
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc---CCceEEeccchHHHHHhhhcCC
Confidence 46899999997 8999999999999998 899999984 44444433332211 2233334555555677777889
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+|||+...
T Consensus 228 DiIINaTp~ 236 (315)
T 3tnl_A 228 VIFTNATGV 236 (315)
T ss_dssp SEEEECSST
T ss_pred CEEEECccC
Confidence 999998753
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-05 Score=68.22 Aligned_cols=123 Identities=14% Similarity=0.108 Sum_probs=76.1
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhh-ccCCCCcEEEEEccCCCcCchHH
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDS 77 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~ 77 (328)
|.+.+..+.+||.|+|| |.+|..++-.|+..+. +|..+++++++.+.....+. .......+++.. | + .+
T Consensus 1 ~~~~~~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~----~~ 72 (326)
T 2zqz_A 1 MASITDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--E----YS 72 (326)
T ss_dssp -----CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GG
T ss_pred CCccccCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--C----HH
Confidence 55656666789999998 9999999999988774 89999987654443222111 111112333332 2 1 34
Q ss_pred hhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 78 IVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 78 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
.++++|+||..++........ ..+.+..|+...+.+.+.+.+......+|.+|-
T Consensus 73 a~~~aDvVii~ag~~~k~g~~-R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 73 DAKDADLVVITAGAPQKPGET-RLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp GGGGCSEEEECCCCC-----C-HHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred HhCCCCEEEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 577899999999864433222 236678899999999998887633345666654
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.03 E-value=4.6e-05 Score=66.40 Aligned_cols=119 Identities=11% Similarity=0.106 Sum_probs=79.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
...+++|.|+|+ |.+|..++..|+..|. +|..+++++++.+.....+... ........+..+ | ++ .++++
T Consensus 16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~--d---~~-~~~~a 88 (331)
T 4aj2_A 16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSK--D---YS-VTANS 88 (331)
T ss_dssp -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECS--S---GG-GGTTE
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcC--C---HH-HhCCC
Confidence 345789999997 9999999999999886 8999998765544432222111 001111222221 2 23 47889
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|+||.+||......... .+.++.|+.-.+.+.+.+.+.+....++.+|-
T Consensus 89 DiVvi~aG~~~kpG~tR-~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 89 KLVIITAGARQQEGESR-LNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp EEEEECCSCCCCTTCCG-GGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CEEEEccCCCCCCCccH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999998754433333 48899999999999999888744446676665
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00012 Score=63.94 Aligned_cols=115 Identities=21% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhh----hhhhccCCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTR----HLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
++++|.|+|| |.+|..++..|+..|+ +|...+++++..+... +.........++... .++ +.++++
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-------~d~-~al~~a 83 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-------NNY-EYLQNS 83 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-------SCG-GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-------CCH-HHHCCC
Confidence 3468999998 9999999999999998 9999999877655322 111111111233321 223 457889
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|+||-+++......... .+....|+.-.+.+++.+.+......+|.+|-
T Consensus 84 D~VI~avg~p~k~g~tr-~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTR-SDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp SEEEECCSCCCCTTCCS-GGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CEEEEcCCCCCCCCCch-hhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999987543222222 25567788888888888777532234555544
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=98.01 E-value=3.4e-06 Score=70.15 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=57.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih 87 (328)
.++|+|+|+ |.+|+.+++.|.+.|+ |++++++++....+. .++.++.||.++++.+.++ ++++|.||-
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~---------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR---------SGANFVHGDPTRVSDLEKANVRGARAVIV 77 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH---------TTCEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh---------cCCeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence 568999997 9999999999999999 999988765543321 2578899999999888776 789999997
Q ss_pred ccC
Q 020266 88 TAS 90 (328)
Q Consensus 88 ~a~ 90 (328)
+.+
T Consensus 78 ~~~ 80 (234)
T 2aef_A 78 DLE 80 (234)
T ss_dssp CCS
T ss_pred cCC
Confidence 653
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.01 E-value=6.4e-06 Score=73.38 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=58.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+++|+|+|+ |.||..+++.|...|++|++++|++++.+...... + .. +.+|..+.+++.++++++|+||
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g--~~---~~~~~~~~~~l~~~~~~~DvVi 234 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---G--GR---VITLTATEANIKKSVQHADLLI 234 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---T--TS---EEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---C--ce---EEEecCCHHHHHHHHhCCCEEE
Confidence 45789999999 99999999999999999999999875544332221 1 11 3456677778888888999999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
++++.
T Consensus 235 ~~~g~ 239 (369)
T 2eez_A 235 GAVLV 239 (369)
T ss_dssp ECCC-
T ss_pred ECCCC
Confidence 99875
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.97 E-value=7e-05 Score=64.80 Aligned_cols=115 Identities=12% Similarity=0.028 Sum_probs=74.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
|+|.|+|+ |.+|..++..|+..|. +|..+++++++.+.....+... ...........| + .+.++++|+|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~~aDvV 73 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTEDSDVC 73 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C----HHHhCCCCEE
Confidence 57999996 9999999999998886 8999999887654322211110 000122222111 1 2457789999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|-+||........ ..+.++.|+.-.+.+.+.+.+......++.+|-
T Consensus 74 ii~ag~~~kpG~~-R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 74 IITAGLPRSPGMS-RDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp EECCCC--------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred EECCCCCCCCCCC-HHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 9999874433222 237888999999999999988744445666665
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=2e-05 Score=69.56 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=55.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~ 82 (328)
.+++|||+||+|.||..+++.+...|++|++++|++++.+....+ + .. ...|.++.+++.+.++ ++
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~----g----~~-~~~d~~~~~~~~~~~~~~~~~~~ 239 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI----G----GE-VFIDFTKEKDIVGAVLKATDGGA 239 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT----T----CC-EEEETTTCSCHHHHHHHHHTSCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc----C----Cc-eEEecCccHhHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999987655432221 1 11 2247775555554443 68
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+||++++.
T Consensus 240 D~vi~~~g~ 248 (347)
T 2hcy_A 240 HGVINVSVS 248 (347)
T ss_dssp EEEEECSSC
T ss_pred CEEEECCCc
Confidence 999999873
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.96 E-value=9.5e-05 Score=64.69 Aligned_cols=177 Identities=15% Similarity=0.068 Sum_probs=102.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-------eEEEEecCCCC--hhhhhhhhhccCCCCcEEEEEccCCCcCchH
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-------TVKASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFD 76 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 76 (328)
+|+..||.|+||+|.||+.|+-.|..... ++..++..+.. .+.....+...........+.+ .+..
T Consensus 21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~-----~~~~ 95 (345)
T 4h7p_A 21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVT-----ADPR 95 (345)
T ss_dssp -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEE-----SCHH
T ss_pred CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEc-----CChH
Confidence 45566899999999999999988876532 67777765432 1222221211111112222222 2356
Q ss_pred HhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccC-CCC
Q 020266 77 SIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDE-TWF 154 (328)
Q Consensus 77 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E-~~~ 154 (328)
+.++++|+||-+||......... .+.++.|..-.+.+.+.+.+.. ..-+++.+|--.-... ...... ...
T Consensus 96 ~a~~~advVvi~aG~prkpGmtR-~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~-------~i~~~~~~g~ 167 (345)
T 4h7p_A 96 VAFDGVAIAIMCGAFPRKAGMER-KDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNA-------LILLKSAQGK 167 (345)
T ss_dssp HHTTTCSEEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-------HHHHHHTTTC
T ss_pred HHhCCCCEEEECCCCCCCCCCCH-HHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHH-------HHHHHHccCC
Confidence 67899999999999755444333 4889999999999999987752 2234566664211000 000000 001
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~ 201 (328)
+.+ ....+.+-+..-++-...+++.+++..-++-..|.|..
T Consensus 168 ~~~------r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~H 208 (345)
T 4h7p_A 168 LNP------RHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNH 208 (345)
T ss_dssp SCG------GGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCS
T ss_pred CCc------ceeeeccchhHHHHHHHHHHHHCcChhheecceeecCC
Confidence 111 13345556666666666777778776666656666754
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.4e-05 Score=68.05 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=53.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+++|+++|+|+ |.+|++++..|++.|++|++..|+.++...+...+... ..+.. .| .+++.+ .++|+||
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~---~~~~~--~~---~~~~~~--~~~DivV 185 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT---GSIQA--LS---MDELEG--HEFDLII 185 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG---SSEEE--CC---SGGGTT--CCCSEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc---CCeeE--ec---HHHhcc--CCCCEEE
Confidence 45789999998 78999999999999999999999877666555443221 12221 23 222322 5799999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
++++.
T Consensus 186 n~t~~ 190 (271)
T 1nyt_A 186 NATSS 190 (271)
T ss_dssp ECCSC
T ss_pred ECCCC
Confidence 99986
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=8.7e-05 Score=64.50 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=74.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhh-hccC-CCCcEEEEEccCCCcCchHHhhCCc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLL-ALDG-ASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
.++++|.|+|+ |.+|..++..|+..| .+|.+++++++..+.....+ .... ....+++.. | + .+.++++
T Consensus 4 ~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~----~~al~~a 75 (316)
T 1ldn_A 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--D----YDDCRDA 75 (316)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--C----GGGTTTC
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--c----HHHhCCC
Confidence 34678999998 999999999998877 48999999865433321111 1111 111333332 1 1 2357889
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|+||-+++......... .+.+..|..-.+.+++.+.+......++.+|-
T Consensus 76 DvViia~~~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN 124 (316)
T 1ldn_A 76 DLVVICAGANQKPGETR-LDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124 (316)
T ss_dssp SEEEECCSCCCCTTTCS-GGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CEEEEcCCCCCCCCCCH-HHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 99999998744332222 36677888888888888877633234444443
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00021 Score=62.19 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=73.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhc----cCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
+++|.|+|| |.+|..++..|+..|+ +|.++++++++.+.....+.. .....++... .++ +.++++|
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-------~d~-~al~~aD 74 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS-------NTY-DDLAGAD 74 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-------CCG-GGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC-------CCH-HHhCCCC
Confidence 468999998 9999999999999998 888899887655432222111 1111223321 223 4578999
Q ss_pred EEEEccCCCCCCCCC----cchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 84 GVCHTASPFYHDAKD----PQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 84 ~vih~a~~~~~~~~~----~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+||-+++........ ...+....|+.-.+.+++.+.+......+|.+|-
T Consensus 75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 127 (322)
T 1t2d_A 75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127 (322)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999764322211 0225667788888888888777633334555544
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.6e-05 Score=69.70 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=53.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~ 82 (328)
.+++|+|+||+|.||..+++.+...|++|++++|++++.+.. +.+ + .. ...|.++.+++.+.+. ++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~---g----~~-~~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQI---G----FD-AAFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT---T----CS-EEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hhc---C----Cc-EEEecCCHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999876544433 111 1 11 2347776444443332 58
Q ss_pred cEEEEccC
Q 020266 83 DGVCHTAS 90 (328)
Q Consensus 83 d~vih~a~ 90 (328)
|+||+++|
T Consensus 216 d~vi~~~g 223 (333)
T 1v3u_A 216 DCYFDNVG 223 (333)
T ss_dssp EEEEESSC
T ss_pred eEEEECCC
Confidence 99999997
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=8.9e-05 Score=63.40 Aligned_cols=115 Identities=11% Similarity=0.048 Sum_probs=75.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhc--cCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
|||.|+|| |+||+.++-.|+.++ .++..++..+...+.....+.. ............+ |+ +.++++|+|
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~--d~----~~~~~aDvV 73 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--DY----SLLKGSEII 73 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES--CG----GGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC--CH----HHhCCCCEE
Confidence 57999995 999999999988876 4788888876443332221111 0001112222111 22 246789999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|-.||......... .+.++.|..-.+.+.+.+.+......++.+|-
T Consensus 74 vitAG~prkpGmtR-~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 74 VVTAGLARKPGMTR-LDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EECCCCCCCSSSCH-HHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEecCCCCCCCCch-HHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 99999755444433 48899999999999999998844445666665
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0001 Score=63.99 Aligned_cols=115 Identities=12% Similarity=0.067 Sum_probs=72.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.+||.|+|| |.+|..++-.|+..+. +|..+++++++.+.....+... .....+++.. | + .+.++++|+|
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDvV 76 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--E----YSDCKDADLV 76 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGTTCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCCCEE
Confidence 368999998 9999999999988775 8999998765544322222111 1112333332 2 1 3457899999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|.+++......... .+.+..|+...+.+.+.+.+......+|.+|-
T Consensus 77 ii~ag~~~~~g~~R-~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 77 VITAGAPQKPGESR-LDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp EECCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred EECCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 99998643322222 26678899999999999888744445666644
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.85 E-value=4.7e-05 Score=66.96 Aligned_cols=101 Identities=15% Similarity=0.088 Sum_probs=59.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCC-----C-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRG-----Y-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g-----~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|+|++|+|.||||++|+.|++.|++++ + +|..+.+..+..+.+............+. +.+.+ .+.+.
T Consensus 7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~-----~~~~~--~~~~~ 79 (352)
T 2nqt_A 7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRV-----VEPTE--AAVLG 79 (352)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCB-----CEECC--HHHHT
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceee-----eccCC--HHHhc
Confidence 446799999999999999999999887 3 67777643322222211110000000111 11111 22345
Q ss_pred CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
++|+||-+.+... +..++..+ +. ++ ++|-+|+..
T Consensus 80 ~~DvVf~alg~~~-----------------s~~~~~~~-~~-G~-~vIDlSa~~ 113 (352)
T 2nqt_A 80 GHDAVFLALPHGH-----------------SAVLAQQL-SP-ET-LIIDCGADF 113 (352)
T ss_dssp TCSEEEECCTTSC-----------------CHHHHHHS-CT-TS-EEEECSSTT
T ss_pred CCCEEEECCCCcc-----------------hHHHHHHH-hC-CC-EEEEECCCc
Confidence 8999998876421 23455666 54 54 789999864
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.83 E-value=2.7e-05 Score=66.50 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=57.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++++++|+|+ |.+|+.++..|.+.|. +|.+..|+.++...+...+.... +.+.....+ .+++.+.+.++|+|
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~--~~~~i~~~~---~~~l~~~l~~~DiV 198 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAV--GREAVVGVD---ARGIEDVIAAADGV 198 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHH--TSCCEEEEC---STTHHHHHHHSSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhc--CCceEEEcC---HHHHHHHHhcCCEE
Confidence 46889999997 8999999999999998 79999999887776655543221 112222223 34566777789999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
||+...
T Consensus 199 InaTp~ 204 (283)
T 3jyo_A 199 VNATPM 204 (283)
T ss_dssp EECSST
T ss_pred EECCCC
Confidence 998753
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00034 Score=60.56 Aligned_cols=113 Identities=13% Similarity=0.018 Sum_probs=73.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHC--CCeEEEEecCCCChhhhhhhhhc----cCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
|+|.|+|+ |.+|..++..|+.. |++|.+++++++..+.+...+.. .....++... . ++.+ ++++|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~------d~~~-l~~aD 71 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS-N------DYAD-TANSD 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE-S------CGGG-GTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC-C------CHHH-HCCCC
Confidence 47999998 99999999999985 79999999987765543221110 0111122211 1 2333 67899
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+||-+++........ ..+.+..|+.....+.+.+.+......+|.++-
T Consensus 72 vViiav~~p~~~g~~-r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN 119 (310)
T 1guz_A 72 IVIITAGLPRKPGMT-REDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (310)
T ss_dssp EEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred EEEEeCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 999998753322222 236777898888889888877633345566544
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00016 Score=62.78 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=77.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhh---ccCCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLA---LDGASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
..++|.|+|+ |.+|..++..|+..|. +|..+++++++.+.....+. ......++.. ..| ++ + ++++
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~-t~d---~~---~-~~da 90 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVS-GKD---YS---V-SAGS 90 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEE-ESS---SC---S-CSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEE-cCC---HH---H-hCCC
Confidence 4678999998 9999999999999886 89999997655443222111 1111112221 223 22 2 6789
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|+||-+||......... .+.+..|+.-.+.+.+.+.+......++.+|-
T Consensus 91 DiVIitaG~p~kpG~tR-~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 91 KLVVITAGARQQEGESR-LNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp SEEEECCSCCCCSSCCT-TGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CEEEEeCCCCCCCCCCH-HHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 99999998754433333 37788999999999998887733445666664
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.78 E-value=9.3e-06 Score=62.05 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=53.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+++|+|+|+ |.+|+.+++.|.+.|++|.+.+|++++...+...+. ... ...+++.+.++++|+||.+
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~-------~~~-----~~~~~~~~~~~~~Divi~a 87 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE-------YEY-----VLINDIDSLIKNNDVIITA 87 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT-------CEE-----EECSCHHHHHHTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC-------Cce-----EeecCHHHHhcCCCEEEEe
Confidence 789999996 999999999999999999999998776655444321 111 2235567778889999998
Q ss_pred cCC
Q 020266 89 ASP 91 (328)
Q Consensus 89 a~~ 91 (328)
.+.
T Consensus 88 t~~ 90 (144)
T 3oj0_A 88 TSS 90 (144)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=2.3e-05 Score=68.57 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=53.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-----CCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DGC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 82 (328)
.+++|+|+||+|.||..+++.+...|++|++++|++++.+.+..+ + .. ...|.++.+....+. .++
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g--~~---~~~~~~~~~~~~~~~~~~~~~~~ 210 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----G--AW---QVINYREEDLVERLKEITGGKKV 210 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----T--CS---EEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----C--CC---EEEECCCccHHHHHHHHhCCCCc
Confidence 478999999999999999999999999999999976554433221 1 11 123666655444333 258
Q ss_pred cEEEEccC
Q 020266 83 DGVCHTAS 90 (328)
Q Consensus 83 d~vih~a~ 90 (328)
|+||+++|
T Consensus 211 D~vi~~~g 218 (327)
T 1qor_A 211 RVVYDSVG 218 (327)
T ss_dssp EEEEECSC
T ss_pred eEEEECCc
Confidence 99999997
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=5e-05 Score=68.45 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=60.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih 87 (328)
.++|+|+|+ |-+|+.+++.|.+.|++|++++++++....+.. .++.++.||.++++.+.++ ++++|+||-
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~--------~g~~vi~GDat~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH--------TTCCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh--------CCCeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence 457999996 999999999999999999999999876554332 2567899999999988877 678999987
Q ss_pred ccC
Q 020266 88 TAS 90 (328)
Q Consensus 88 ~a~ 90 (328)
+..
T Consensus 75 ~~~ 77 (413)
T 3l9w_A 75 AID 77 (413)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.8e-05 Score=68.25 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=53.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-----CCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DGC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 82 (328)
.+++|+|+||+|.||..+++.+...|++|++++|++++.+.+..+ + .. ...|.++.+....+. .++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g--~~---~~~d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----G--CH---HTINYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----T--CS---EEEETTTSCHHHHHHHHHTTCCE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C--CC---EEEECCCHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999999999999986544433221 1 11 123666554433332 268
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+||+++|.
T Consensus 216 d~vi~~~g~ 224 (333)
T 1wly_A 216 DVVYDSIGK 224 (333)
T ss_dssp EEEEECSCT
T ss_pred eEEEECCcH
Confidence 999999984
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=3.5e-05 Score=67.88 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=52.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-----CCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DGC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 82 (328)
.+++|||+||+|.||..+++.+...|++|++++|++++.+.+...+ + .. ...|..+.+++.+.+ .++
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~---g----~~-~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF---G----FD-DAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS---C----CS-EEEETTSCSCSHHHHHHHCTTCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C----Cc-eEEecCCHHHHHHHHHHHhCCCC
Confidence 4789999999999999999999999999999998765544332111 1 11 123666544443333 268
Q ss_pred cEEEEccC
Q 020266 83 DGVCHTAS 90 (328)
Q Consensus 83 d~vih~a~ 90 (328)
|+||+++|
T Consensus 227 d~vi~~~g 234 (345)
T 2j3h_A 227 DIYFENVG 234 (345)
T ss_dssp EEEEESSC
T ss_pred cEEEECCC
Confidence 99999987
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00025 Score=61.20 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=68.2
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhh-ccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|+|.|+|+ |.+|..++..|+..|+ +|.++++++++.......+. ............. + . +.++++|+||
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~---~---~-~a~~~aDvVI 72 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG---G---H-SELADAQVVI 72 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEE---C---G-GGGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEEC---C---H-HHhCCCCEEE
Confidence 47999998 9999999999999998 99999998654333222111 1111112222211 2 2 3577899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
-+++......... .+.+..|+...+.+++.+.+......+|.+|-
T Consensus 73 i~~~~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tN 117 (304)
T 2v6b_A 73 LTAGANQKPGESR-LDLLEKNADIFRELVPQITRAAPDAVLLVTSN 117 (304)
T ss_dssp ECC-------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSS
T ss_pred EcCCCCCCCCCcH-HHHHHhHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 9997533222222 25677899999999888877622234555443
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=4e-05 Score=67.78 Aligned_cols=74 Identities=24% Similarity=0.229 Sum_probs=52.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh---hC--Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI---VD--GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~--~~ 82 (328)
.+++|+|+||+|.||..+++.+...|++|++++|++++.+....+ + .. ...|..+.+...++ .. ++
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g----a~-~~~d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----G----AH-EVFNHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T----CS-EEEETTSTTHHHHHHHHHCTTCE
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc----C----CC-EEEeCCCchHHHHHHHHcCCCCc
Confidence 478999999999999999999999999999999986554432221 1 11 12455554433333 22 68
Q ss_pred cEEEEccC
Q 020266 83 DGVCHTAS 90 (328)
Q Consensus 83 d~vih~a~ 90 (328)
|+||+++|
T Consensus 241 D~vi~~~G 248 (351)
T 1yb5_A 241 DIIIEMLA 248 (351)
T ss_dssp EEEEESCH
T ss_pred EEEEECCC
Confidence 99999987
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=4.3e-05 Score=67.65 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh---C--Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---D--GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~--~~ 82 (328)
.+++|+|+||+|.||..+++.+...|++|++++|++++.+....+ + .. ...|..+.+....+. . ++
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----G----AA-AGFNYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----C----Cc-EEEecCChHHHHHHHHHhcCCCc
Confidence 478999999999999999999999999999999986554443221 1 11 224655554433332 2 68
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+||+++|.
T Consensus 233 d~vi~~~G~ 241 (354)
T 2j8z_A 233 NLILDCIGG 241 (354)
T ss_dssp EEEEESSCG
T ss_pred eEEEECCCc
Confidence 999999973
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=5.4e-05 Score=67.04 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=63.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh---C-CccE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---D-GCDG 84 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~-~~d~ 84 (328)
++|+|+||+|.||..+++.+...|+ +|+++++++++.+.+...+ + .. ...|..+.+....+. . ++|+
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g----~~-~~~d~~~~~~~~~~~~~~~~~~d~ 233 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---G----FD-AAINYKKDNVAEQLRESCPAGVDV 233 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---C----CS-EEEETTTSCHHHHHHHHCTTCEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---C----Cc-eEEecCchHHHHHHHHhcCCCCCE
Confidence 8999999999999999999999999 9999999765443332211 1 11 224666544333222 2 5999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
||+++|. . .....++.++.. +++|.++..
T Consensus 234 vi~~~G~----------~-------~~~~~~~~l~~~---G~iv~~G~~ 262 (357)
T 2zb4_A 234 YFDNVGG----------N-------ISDTVISQMNEN---SHIILCGQI 262 (357)
T ss_dssp EEESCCH----------H-------HHHHHHHTEEEE---EEEEECCCG
T ss_pred EEECCCH----------H-------HHHHHHHHhccC---cEEEEECCc
Confidence 9999972 1 122334444432 588988874
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00075 Score=58.63 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=73.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhh-h---ccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLL-A---LDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
+++|.|+|+ |.+|..++..|+..|+ +|.+++++++..+...... . ......++... .++ +.++++|
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-------~d~-~a~~~aD 74 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-------DDY-ADISGSD 74 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-------SCG-GGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-------CCH-HHhCCCC
Confidence 468999998 9999999999999998 9999999876554421111 0 00111223221 123 4567899
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
+||-+++......... .+....|....+.+++.+.+......+|.+|..
T Consensus 75 iVi~avg~p~~~g~~r-~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp 123 (317)
T 2ewd_A 75 VVIITASIPGRPKDDR-SELLFGNARILDSVAEGVKKYCPNAFVICITNP 123 (317)
T ss_dssp EEEECCCCSSCCSSCG-GGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred EEEEeCCCCCCCCCcH-HHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCCh
Confidence 9999997644332222 255566888788888877765333345556553
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=6.2e-05 Score=65.00 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=54.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecC---CCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRD---PNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
.++++++|+|+ |..|++++..|.+.|. +|.+..|+ .++...+...+.... +......++.+.+.+.+.+.++
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~---~~~v~~~~~~~l~~~~~~l~~~ 221 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT---DCVVTVTDLADQHAFTEALASA 221 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHS---SCEEEEEETTCHHHHHHHHHHC
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhcc---CcceEEechHhhhhhHhhccCc
Confidence 45789999997 9999999999999997 89999999 444444443332211 1222233443322235556679
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+|||+...
T Consensus 222 DiIINaTp~ 230 (312)
T 3t4e_A 222 DILTNGTKV 230 (312)
T ss_dssp SEEEECSST
T ss_pred eEEEECCcC
Confidence 999998754
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00019 Score=63.02 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=57.6
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
|++|.|.||||++|+.+++.|.+++ .++..+.+..+....+............ ..+.+.+ + +.++|+||-
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~-----~~~~~~~---~-~~~vDvV~~ 74 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTN-----LKFVPPE---K-LEPADILVL 74 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCC-----CBCBCGG---G-CCCCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccc-----ccccchh---H-hcCCCEEEE
Confidence 5689999999999999999999876 4777776643333222222111100001 1112221 2 468999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
+++... ...++..+.+. ++ ++|-.|+.
T Consensus 75 a~g~~~-----------------s~~~a~~~~~a-G~-~VId~Sa~ 101 (345)
T 2ozp_A 75 ALPHGV-----------------FAREFDRYSAL-AP-VLVDLSAD 101 (345)
T ss_dssp CCCTTH-----------------HHHTHHHHHTT-CS-EEEECSST
T ss_pred cCCcHH-----------------HHHHHHHHHHC-CC-EEEEcCcc
Confidence 876421 23444555555 54 58888885
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.63 E-value=3.5e-05 Score=70.59 Aligned_cols=72 Identities=11% Similarity=0.190 Sum_probs=59.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih 87 (328)
.|+|+|.|+ |-+|++|++.|.++||+|.+++++++....+...+ .+..+.||-++++.++++ ++++|.+|-
T Consensus 3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~Agi~~ad~~ia 74 (461)
T 4g65_A 3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEAGAQDADMLVA 74 (461)
T ss_dssp CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence 468999996 99999999999999999999999877666544332 578899999999988876 568999885
Q ss_pred c
Q 020266 88 T 88 (328)
Q Consensus 88 ~ 88 (328)
+
T Consensus 75 ~ 75 (461)
T 4g65_A 75 V 75 (461)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=7.1e-05 Score=65.69 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=53.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh----CCcc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV----DGCD 83 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~----~~~d 83 (328)
.+++|||+||+|.||..+++.+...|++|++++|++++.+.+.+.+ + .. ...|..+.+....+. .++|
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~---g----~~-~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL---G----FD-GAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT---C----CS-EEEETTTSCHHHHHHHHCTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C----CC-EEEECCCHHHHHHHHHhcCCCce
Confidence 4789999999999999999999999999999999876554431221 1 11 123555544333332 2699
Q ss_pred EEEEccC
Q 020266 84 GVCHTAS 90 (328)
Q Consensus 84 ~vih~a~ 90 (328)
+||+++|
T Consensus 221 ~vi~~~g 227 (336)
T 4b7c_A 221 VFFDNVG 227 (336)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999987
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.63 E-value=7.6e-05 Score=63.93 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=48.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||+|.|+|+||.+|..+++.|.+.|++|++.+|+++..+.+.. . ++ +.+ +..++++++|+||-+
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~----~----g~-----~~~---~~~~~~~~aDvVi~a 74 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG----M----GI-----PLT---DGDGWIDEADVVVLA 74 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH----T----TC-----CCC---CSSGGGGTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh----c----CC-----CcC---CHHHHhcCCCEEEEc
Confidence 5689999999999999999999999999999987655444322 1 11 112 233456789999976
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
.
T Consensus 75 v 75 (286)
T 3c24_A 75 L 75 (286)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0013 Score=58.08 Aligned_cols=173 Identities=10% Similarity=0.026 Sum_probs=96.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-----eEEEEecCCCC----hhhhhhhhhcc--CCCCcEEEEEccCCCcCchH
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-----TVKASVRDPND----PKKTRHLLALD--GASERLQLFKANLLEEGSFD 76 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~----~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~ 76 (328)
+++||.|+||+|.||.+++-.|+..+. .|...+.+.+. .+.....+... +...++.. + ....
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i--~-----~~~y 103 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI--G-----IDPY 103 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE--E-----SCHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEE--e-----cCCH
Confidence 367899999999999999999988762 26665554433 12211111111 00112222 1 1345
Q ss_pred HhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcC-CCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020266 77 SIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 77 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
+.++++|+||-+||........ ..+.++.|+.-.+.+.+++.+. .....++.+|--.-... .........+
T Consensus 104 ~~~~daDvVVitag~prkpG~t-R~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t-------~ia~k~sg~~ 175 (375)
T 7mdh_A 104 EVFEDVDWALLIGAKPRGPGME-RAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNA-------LICLKNAPDI 175 (375)
T ss_dssp HHTTTCSEEEECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-------HHHHHTCTTS
T ss_pred HHhCCCCEEEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHH-------HHHHHHcCCC
Confidence 6778999999999875433333 3488999999999999888763 23346777765211110 0000111000
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCC
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPL 201 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~ 201 (328)
.+ ...-+.+-+..-++-...+++.|++..-++--.|.|..
T Consensus 176 ~~------rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeH 215 (375)
T 7mdh_A 176 PA------KNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH 215 (375)
T ss_dssp CG------GGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCS
T ss_pred Cc------cEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecC
Confidence 00 12233344455566666666667755555533566754
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.62 E-value=1.3e-05 Score=68.87 Aligned_cols=78 Identities=14% Similarity=0.073 Sum_probs=52.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+++|+++|+|++ .+|++++..|++.| +|++.+|+.++.+.+...+...... .. .+..|+.+. .+.+.++|+||
T Consensus 126 l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~-~~-~~~~d~~~~---~~~~~~~DilV 198 (287)
T 1nvt_A 126 VKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNK-KF-GEEVKFSGL---DVDLDGVDIII 198 (287)
T ss_dssp CCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTC-CH-HHHEEEECT---TCCCTTCCEEE
T ss_pred cCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhccc-cc-ceeEEEeeH---HHhhCCCCEEE
Confidence 457899999985 99999999999999 9999999876655554433211000 00 011233331 33456799999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
|+++.
T Consensus 199 n~ag~ 203 (287)
T 1nvt_A 199 NATPI 203 (287)
T ss_dssp ECSCT
T ss_pred ECCCC
Confidence 99986
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=64.74 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=46.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
++++|.|.||||++|+.+++.|.+++ .++.++.+..+....+........ ..+ ..|+.-.+ .+.++++|+||
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~--~~v---~~dl~~~~--~~~~~~vDvVf 87 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLR--AQK---LPTLVSVK--DADFSTVDAVF 87 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGT--TSC---CCCCBCGG--GCCGGGCSEEE
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhc--Ccc---cccceecc--hhHhcCCCEEE
Confidence 44689999999999999999999876 477777654433333332221111 011 12332211 33445799999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
-+++.
T Consensus 88 ~atp~ 92 (359)
T 1xyg_A 88 CCLPH 92 (359)
T ss_dssp ECCCT
T ss_pred EcCCc
Confidence 88753
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00013 Score=65.08 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=57.5
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
||+...+.+|+|+|+|+ |.+|+.+++.+.+.|++|++++.++..... .. .-.++..|..|.+.+.++.+
T Consensus 4 ~~~~~~~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~---~~-------ad~~~~~~~~d~~~l~~~~~ 72 (377)
T 3orq_A 4 MNFNKLKFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCR---YV-------AHEFIQAKYDDEKALNQLGQ 72 (377)
T ss_dssp SSCCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTG---GG-------SSEEEECCTTCHHHHHHHHH
T ss_pred cccccCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhh---hh-------CCEEEECCCCCHHHHHHHHH
Confidence 34434456889999995 889999999999999999999876553321 00 12456789999998998888
Q ss_pred CccEEEE
Q 020266 81 GCDGVCH 87 (328)
Q Consensus 81 ~~d~vih 87 (328)
.+|+|+-
T Consensus 73 ~~dvi~~ 79 (377)
T 3orq_A 73 KCDVITY 79 (377)
T ss_dssp HCSEEEE
T ss_pred hCCccee
Confidence 8998854
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00051 Score=59.42 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=75.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhc-cCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|||.|+|| |.+|..++-.|+..+ .+|..+++++++.+.....+.. ......+++.. + + .+.++++|+||
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~aD~Vi 72 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--S----YGDLEGARAVV 72 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGTTEEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--C----HHHhCCCCEEE
Confidence 57999998 999999999999887 6899999986544432222211 10012333332 2 2 33578899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
..++........ ..+....|+...+.+.+.+.+......+|.+|-
T Consensus 73 i~ag~~~~~g~~-r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 73 LAAGVAQRPGET-RLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp ECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred ECCCCCCCCCcC-HHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 999874433332 236678899999999998887633345666654
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.57 E-value=6.2e-05 Score=64.82 Aligned_cols=75 Identities=19% Similarity=0.103 Sum_probs=54.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++++|+|+|+ |.+|+.++..|.+.|+ +|++..|+.++...+...+.... . .. .+.+++.+.+.++|+|
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~---~-~~-----~~~~~~~~~~~~aDiv 208 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERR---S-AY-----FSLAEAETRLAEYDII 208 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSS---C-CE-----ECHHHHHHTGGGCSEE
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhcc---C-ce-----eeHHHHHhhhccCCEE
Confidence 45789999997 8899999999999997 89999998776665544432110 0 11 1223466677789999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|++++.
T Consensus 209 In~t~~ 214 (297)
T 2egg_A 209 INTTSV 214 (297)
T ss_dssp EECSCT
T ss_pred EECCCC
Confidence 999875
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00058 Score=59.08 Aligned_cols=113 Identities=12% Similarity=0.033 Sum_probs=71.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhh-cc-CCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLA-LD-GASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
|+|.|+| +|.+|..++..|+..| ++|.+++|+++..+.+...+. .. .....+.....| . +.++++|+|
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d------~-~~~~~aDvV 73 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND------W-AALADADVV 73 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC------G-GGGTTCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCC------H-HHhCCCCEE
Confidence 6899999 7999999999999999 899999998765544432211 10 001123332222 2 356789999
Q ss_pred EEccCCCCC----CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEec
Q 020266 86 CHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (328)
Q Consensus 86 ih~a~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~S 131 (328)
|-+++.... ..... .+....|+.....+++.+.+......+|.+|
T Consensus 74 iiav~~~~~~~~~~g~~r-~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 74 ISTLGNIKLQQDNPTGDR-FAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp EECCSCGGGTC--------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEecCCcccCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 998876331 11122 2567788888888888887763323445444
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00013 Score=61.19 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=55.9
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCC-------------------hhhhhhhhhccCCCCcEEEEEc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPND-------------------PKKTRHLLALDGASERLQLFKA 67 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 67 (328)
+.++|+|+|+ |.+|+.+++.|+..|. +|.+++++.-+ .+.+.+.+.......+++.+..
T Consensus 30 ~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 108 (249)
T 1jw9_B 30 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 108 (249)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence 4678999995 8999999999999996 89999988733 3222222222222234566666
Q ss_pred cCCCcCchHHhhCCccEEEEcc
Q 020266 68 NLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 68 Dl~~~~~~~~~~~~~d~vih~a 89 (328)
++++ +.+.++++++|+||.+.
T Consensus 109 ~~~~-~~~~~~~~~~DvVi~~~ 129 (249)
T 1jw9_B 109 LLDD-AELAALIAEHDLVLDCT 129 (249)
T ss_dssp CCCH-HHHHHHHHTSSEEEECC
T ss_pred cCCH-hHHHHHHhCCCEEEEeC
Confidence 6653 45667788999999875
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00051 Score=59.00 Aligned_cols=73 Identities=23% Similarity=0.217 Sum_probs=46.7
Q ss_pred CCCCe-EEEE-CCc-----------------cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhh-----hh---c-cCC
Q 020266 7 AAGKV-VCVT-GAS-----------------GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL-----LA---L-DGA 58 (328)
Q Consensus 7 ~~~~~-vlVt-Gat-----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-----~~---~-~~~ 58 (328)
..+++ |||| |+| |-.|.+++++++++|++|+.+.+...-....++. .. . ...
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~~ 113 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPA 113 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC-
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCcCcchhccCccchhhhhcccccc
Confidence 35677 9998 777 9999999999999999999999854322111000 00 0 001
Q ss_pred CCcEEEEEccCCCcCchHHhh
Q 020266 59 SERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 59 ~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
+.++..+..|+....++.+++
T Consensus 114 ~~~~~~i~v~v~sa~~m~~av 134 (313)
T 1p9o_A 114 LSGLLSLEAEENALPGFAEAL 134 (313)
T ss_dssp CCSEEEEEEETTTSTTHHHHH
T ss_pred ccccceeeeccccHHHHHHHH
Confidence 234556777777666655444
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.50 E-value=9.3e-05 Score=65.14 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=64.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc---hHHhhC--Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS---FDSIVD--GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~--~~ 82 (328)
.+++|||+||+|.+|..+++.+...|++|++++|++++.+.+..+ + ... ..|.++.+. +.++.. ++
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g----a~~-~~d~~~~~~~~~~~~~~~~~~~ 236 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL----G----ADE-TVNYTHPDWPKEVRRLTGGKGA 236 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----T----CSE-EEETTSTTHHHHHHHHTTTTCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----C----CCE-EEcCCcccHHHHHHHHhCCCCc
Confidence 478999999999999999999999999999999986654443221 1 111 236655432 223332 68
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
|+||+++|. . . ....++.++.. +++|.+++.
T Consensus 237 d~vi~~~g~--~--------~-------~~~~~~~l~~~---G~~v~~g~~ 267 (343)
T 2eih_A 237 DKVVDHTGA--L--------Y-------FEGVIKATANG---GRIAIAGAS 267 (343)
T ss_dssp EEEEESSCS--S--------S-------HHHHHHHEEEE---EEEEESSCC
T ss_pred eEEEECCCH--H--------H-------HHHHHHhhccC---CEEEEEecC
Confidence 999999982 1 1 12344555443 588888874
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00025 Score=62.64 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=29.9
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDP 43 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~ 43 (328)
|++..+ |+++|.|.||||++|+.+++.|.+++ .+|.++.+++
T Consensus 1 m~~~~~-M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~ 43 (354)
T 1ys4_A 1 MSKGEK-MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASE 43 (354)
T ss_dssp -------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECT
T ss_pred CCCccc-ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEccc
Confidence 555443 34789999999999999999998875 6888886543
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=59.48 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=48.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++|+|.|+| +|.+|+.+++.|.+.|++|++.+|+++..+.+.. .++... +..++++++|+||.
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~--------~g~~~~--------~~~~~~~~~DvVi~ 89 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTARLFP--------SAAQVT--------FQEEAVSSPEVIFV 89 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSB--------TTSEEE--------EHHHHTTSCSEEEE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------cCCcee--------cHHHHHhCCCEEEE
Confidence 457899999 8999999999999999999999997654333211 123321 45667788999998
Q ss_pred ccC
Q 020266 88 TAS 90 (328)
Q Consensus 88 ~a~ 90 (328)
+..
T Consensus 90 av~ 92 (215)
T 2vns_A 90 AVF 92 (215)
T ss_dssp CSC
T ss_pred CCC
Confidence 765
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.48 E-value=9.4e-05 Score=64.03 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=53.7
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|++....++|+|.|+| .|.+|..+++.|++.|++|++.+|++++.+.+... ++.. ..+..++++
T Consensus 1 m~m~~~~~~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~-------~~~~~e~~~ 64 (306)
T 3l6d_A 1 MSLSDESFEFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA--------GAHL-------CESVKAALS 64 (306)
T ss_dssp -CCCCCCCSCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH--------TCEE-------CSSHHHHHH
T ss_pred CCCCcccCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC--------CCee-------cCCHHHHHh
Confidence 4443344577899998 69999999999999999999999987765554332 1111 245677777
Q ss_pred CccEEEEccC
Q 020266 81 GCDGVCHTAS 90 (328)
Q Consensus 81 ~~d~vih~a~ 90 (328)
++|+||-+..
T Consensus 65 ~aDvVi~~vp 74 (306)
T 3l6d_A 65 ASPATIFVLL 74 (306)
T ss_dssp HSSEEEECCS
T ss_pred cCCEEEEEeC
Confidence 8999997753
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00014 Score=64.38 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=53.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh----CCcc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV----DGCD 83 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~----~~~d 83 (328)
.+++|+|+||+|.||..+++.+...|.+|+++++++++.+....+ + .. ...|..+.+....+. .++|
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~~~~~~~~~~~~~~~~~~~g~D 237 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----G----AK-RGINYRSEDFAAVIKAETGQGVD 237 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHHHSSCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----C----CC-EEEeCCchHHHHHHHHHhCCCce
Confidence 478999999999999999999999999999999987665443332 1 11 113444444333332 2699
Q ss_pred EEEEccCC
Q 020266 84 GVCHTASP 91 (328)
Q Consensus 84 ~vih~a~~ 91 (328)
+||+++|.
T Consensus 238 vvid~~g~ 245 (353)
T 4dup_A 238 IILDMIGA 245 (353)
T ss_dssp EEEESCCG
T ss_pred EEEECCCH
Confidence 99999873
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00014 Score=66.39 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=52.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEE-EE-----EccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ-LF-----KANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~-----~~Dl~~~~~~~~~~~~~d 83 (328)
|+|.|+| +|++|..++..|++.|++|++++|++++.+.+........ .+++. .+ .+.++-..++.++++++|
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~-e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aD 80 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIY-EPGLEKMIARNVKAGRLRFGTEIEQAVPEAD 80 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCC-STTHHHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCccc-CCCHHHHHHhhcccCcEEEECCHHHHHhcCC
Confidence 5899998 5999999999999999999999998776655443111000 00000 00 011111245667778899
Q ss_pred EEEEccCCC
Q 020266 84 GVCHTASPF 92 (328)
Q Consensus 84 ~vih~a~~~ 92 (328)
+||-+.+..
T Consensus 81 vViiaVptp 89 (450)
T 3gg2_A 81 IIFIAVGTP 89 (450)
T ss_dssp EEEECCCCC
T ss_pred EEEEEcCCC
Confidence 999887653
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00065 Score=59.07 Aligned_cols=114 Identities=15% Similarity=0.161 Sum_probs=72.2
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhh-ccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|+|.|+|+ |.+|..++..|+..|+ +|.+++++++..+.+...+. ............ ++. +.++++|+||
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~d~----~~~~~aDvVi 72 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA---GDY----ADLKGSDVVI 72 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE---CCG----GGGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe---CCH----HHhCCCCEEE
Confidence 47999998 9999999999999998 99999998655444322111 000001122221 222 2467899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
-+++......... .+....|+...+.+++.+.+......+|.+|-
T Consensus 73 iav~~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tN 117 (319)
T 1a5z_A 73 VAAGVPQKPGETR-LQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117 (319)
T ss_dssp ECCCCCCCSSCCH-HHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EccCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 9887643322222 26677788888888888876523334555543
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00045 Score=58.93 Aligned_cols=108 Identities=13% Similarity=0.159 Sum_probs=68.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCC------------------hhhhhhhhhccCCCCcEEEEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPND------------------PKKTRHLLALDGASERLQLFK 66 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 66 (328)
.++.++|+|.|+ |.+|+.++++|+..|. ++.+++.+.-+ .+...+.+......-+++.+.
T Consensus 33 kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~ 111 (292)
T 3h8v_A 33 KIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHN 111 (292)
T ss_dssp GGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEec
Confidence 345679999995 9999999999999984 68888876532 222222222223334567777
Q ss_pred ccCCCcCchHHhh-----------CCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 67 ANLLEEGSFDSIV-----------DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 67 ~Dl~~~~~~~~~~-----------~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
.++++.+.+.+++ +++|+||.+.- + ...-..+-++|.+. +. .+|+.+.
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D--------n--------~~~R~~in~~c~~~-~~-Pli~~gv 170 (292)
T 3h8v_A 112 YNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD--------N--------FEARMTINTACNEL-GQ-TWMESGV 170 (292)
T ss_dssp CCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS--------S--------HHHHHHHHHHHHHH-TC-CEEEEEE
T ss_pred ccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc--------c--------hhhhhHHHHHHHHh-CC-CEEEeee
Confidence 7777655555544 57999997642 1 22223455667665 44 4676655
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0017 Score=56.00 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=74.3
Q ss_pred eEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhc----cCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
||.|+|| |.+|..++..|+..|. +|..+++++++.+.....+.. .....++... .| . +.++++|+|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d------~-~a~~~aD~V 71 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS-NS------Y-EDMRGSDIV 71 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SC------G-GGGTTCSEE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC-CC------H-HHhCCCCEE
Confidence 5899998 9999999999988787 799999987665443222211 1111223321 22 2 357889999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|-.++......... .+....|+.-.+.+++.+.+......+|.+|-
T Consensus 72 i~~ag~~~k~G~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 72 LVTAGIGRKPGMTR-EQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp EECCSCCCCSSCCT-HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEeCCCCCCCCCcH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 99998744333322 36677899999999998887633335666654
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00013 Score=59.88 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=48.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEE-EecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
|+||+|.|+| +|.+|..++..|.+.|++|.+ .+|++++.+.+...... .. . .+..+.++++|+|
T Consensus 21 m~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~-----~~--~-------~~~~~~~~~aDvV 85 (220)
T 4huj_A 21 QSMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGA-----SV--K-------AVELKDALQADVV 85 (220)
T ss_dssp GGSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTT-----TE--E-------ECCHHHHTTSSEE
T ss_pred hcCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCC-----Cc--c-------cChHHHHhcCCEE
Confidence 3467899999 799999999999999999999 78887766654433211 11 1 1122346779999
Q ss_pred EEcc
Q 020266 86 CHTA 89 (328)
Q Consensus 86 ih~a 89 (328)
|-+.
T Consensus 86 ilav 89 (220)
T 4huj_A 86 ILAV 89 (220)
T ss_dssp EEES
T ss_pred EEeC
Confidence 9765
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0003 Score=59.69 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=52.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-CCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-DGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~d~v 85 (328)
.++|+++|+|+ |.+|++++..|++.|++|.+..|+.++...+...+.... .+.. .|+ + ++. .++|+|
T Consensus 117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~---~~~~--~~~---~---~~~~~~~Div 184 (272)
T 1p77_A 117 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG---NIQA--VSM---D---SIPLQTYDLV 184 (272)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS---CEEE--EEG---G---GCCCSCCSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccC---CeEE--eeH---H---HhccCCCCEE
Confidence 45789999998 889999999999999999999999877666654432211 2322 222 1 111 379999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|++++.
T Consensus 185 In~t~~ 190 (272)
T 1p77_A 185 INATSA 190 (272)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999875
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00028 Score=62.00 Aligned_cols=75 Identities=13% Similarity=0.239 Sum_probs=53.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh---C--Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---D--GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~--~~ 82 (328)
.+++|+|+||+|.+|...+..+...|.+|+++++++++.+....+ + ... ..|..+.+..+.+. . ++
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----g----a~~-~~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----G----AAY-VIDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----T----CSE-EEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----C----CcE-EEeCCcccHHHHHHHHhCCCCC
Confidence 478999999999999999998888899999999988776654432 1 111 12444444333322 2 68
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+||+++|.
T Consensus 215 Dvvid~~g~ 223 (340)
T 3gms_A 215 DAAIDSIGG 223 (340)
T ss_dssp EEEEESSCH
T ss_pred cEEEECCCC
Confidence 999999873
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=56.51 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEecCCCChhh---hhhhhhccCCCCcEEEEEccCCCc--CchHHhhC------CccEEE
Q 020266 18 SGYIASWLVKLLLSRGYTVKASVRDPNDPKK---TRHLLALDGASERLQLFKANLLEE--GSFDSIVD------GCDGVC 86 (328)
Q Consensus 18 tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~------~~d~vi 86 (328)
+|.++...++.|.+.|++|++..|+...... ........ +.+...+++|++++ +++.++++ +-|++|
T Consensus 25 s~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~--G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLV 102 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA--GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLV 102 (157)
T ss_dssp EBCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT--TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEE
T ss_pred cCCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHc--CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 4678899999999999999998886554322 12222222 23567788999998 77766553 239999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
||||.
T Consensus 103 nnAgg 107 (157)
T 3gxh_A 103 HCLAN 107 (157)
T ss_dssp ECSBS
T ss_pred ECCCC
Confidence 99985
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00013 Score=63.24 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=34.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT 49 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 49 (328)
||+|.|+|+ |.+|..++..|.+.|++|.+++|+++..+.+
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~ 42 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQWPAHIEAI 42 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 468999996 9999999999999999999999987655443
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00044 Score=60.57 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=54.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC---eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY---TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
+++|+|.||||.+|+.+++.|.+++| ++..+.........+. . ....+.+ .|+ +++. ++++|+|
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~----~--~g~~i~~--~~~-~~~~----~~~~DvV 72 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG----F--AESSLRV--GDV-DSFD----FSSVGLA 72 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE----E--TTEEEEC--EEG-GGCC----GGGCSEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc----c--CCcceEE--ecC-CHHH----hcCCCEE
Confidence 35799999999999999999997764 4555542211111100 0 0011222 222 2222 3579999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
|-+.+.. .+..++..+.+. ++ ++|.+|+..
T Consensus 73 ~~a~g~~-----------------~s~~~a~~~~~a-G~-kvId~Sa~~ 102 (340)
T 2hjs_A 73 FFAAAAE-----------------VSRAHAERARAA-GC-SVIDLSGAL 102 (340)
T ss_dssp EECSCHH-----------------HHHHHHHHHHHT-TC-EEEETTCTT
T ss_pred EEcCCcH-----------------HHHHHHHHHHHC-CC-EEEEeCCCC
Confidence 9887521 134555666665 65 478888854
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0001 Score=65.40 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=55.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.+.++|+|+|+ |.+|+.++..|...|.+|++++|++++.+.+...... .+..+ ..+.+++.+.+.++|+||
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELL---YSNSAEIETAVAEADLLI 235 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEE---ECCHHHHHHHHHTCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEee---eCCHHHHHHHHcCCCEEE
Confidence 34689999998 9999999999999999999999987665554433211 12111 123345666677899999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
++++.
T Consensus 236 ~~~~~ 240 (361)
T 1pjc_A 236 GAVLV 240 (361)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99875
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00028 Score=62.65 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=50.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC---CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh---CC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP---NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---DG 81 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~~ 81 (328)
++++|+|+|| |.+|..++..+...|.+|+++++++ ++.+.... + +...+ | .+ +..+.+. .+
T Consensus 180 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~-~-------ga~~v--~-~~-~~~~~~~~~~~~ 246 (366)
T 2cdc_A 180 NCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEE-T-------KTNYY--N-SS-NGYDKLKDSVGK 246 (366)
T ss_dssp TTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHH-H-------TCEEE--E-CT-TCSHHHHHHHCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHH-h-------CCcee--c-hH-HHHHHHHHhCCC
Confidence 3889999999 9999999999888899999999987 43322211 1 23444 5 44 3222221 47
Q ss_pred ccEEEEccCC
Q 020266 82 CDGVCHTASP 91 (328)
Q Consensus 82 ~d~vih~a~~ 91 (328)
+|+||++++.
T Consensus 247 ~d~vid~~g~ 256 (366)
T 2cdc_A 247 FDVIIDATGA 256 (366)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999874
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00026 Score=59.83 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=47.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHC-CCeEEE-EecCCCChh--hhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSR-GYTVKA-SVRDPNDPK--KTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~-~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
|+|+||.|+||+|.+|+.+++.+.+. ++++.+ ++|+.+... ....+. ++. . ++.-.+++.+++.++
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~-------g~~--~-gv~v~~dl~~ll~~~ 74 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFL-------GKQ--T-GVALTDDIERVCAEA 74 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTT-------TCC--C-SCBCBCCHHHHHHHC
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHh-------CCC--C-CceecCCHHHHhcCC
Confidence 55789999999999999999999876 677766 466543211 111111 000 0 233345677777789
Q ss_pred cEEEEcc
Q 020266 83 DGVCHTA 89 (328)
Q Consensus 83 d~vih~a 89 (328)
|+||+++
T Consensus 75 DVVIDfT 81 (272)
T 4f3y_A 75 DYLIDFT 81 (272)
T ss_dssp SEEEECS
T ss_pred CEEEEcC
Confidence 9999986
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0016 Score=56.48 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=66.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhh-hhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRH-LLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
+|+|.|+|+ |.+|..++..|+..|+ +|.+++|+++..+.... +............... +++ +.++++|+|
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~~aD~V 79 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDP----EICRDADMV 79 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCG----GGGTTCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC--CCH----HHhCCCCEE
Confidence 568999998 9999999999999998 99999998644331110 0000000012222211 122 245789999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcC
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF 121 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~ 121 (328)
|-+++........ ..+.+..|+.....+++.+.+.
T Consensus 80 ii~v~~~~~~g~~-r~~~~~~n~~~~~~~~~~i~~~ 114 (319)
T 1lld_A 80 VITAGPRQKPGQS-RLELVGATVNILKAIMPNLVKV 114 (319)
T ss_dssp EECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 9998754332222 2366777888888888877664
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=64.50 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=57.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih 87 (328)
.++|+|.|+ |-+|+.+++.|.+.|+ |.+++++++..+ +.. .++.++.||.+|++.++++ ++++|.|+-
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~~~L~~a~i~~a~~vi~ 183 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VLR--------SGANFVHGDPTRVSDLEKANVRGARAVIV 183 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH--------TTCEEEESCTTSHHHHHHTCSTTEEEEEE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh--------CCcEEEEeCCCCHHHHHhcChhhccEEEE
Confidence 357999996 9999999999999999 999988876554 322 3688999999999998877 788999987
Q ss_pred cc
Q 020266 88 TA 89 (328)
Q Consensus 88 ~a 89 (328)
+.
T Consensus 184 ~~ 185 (336)
T 1lnq_A 184 DL 185 (336)
T ss_dssp CC
T ss_pred cC
Confidence 65
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0001 Score=68.68 Aligned_cols=72 Identities=21% Similarity=0.169 Sum_probs=46.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHH-hhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-IVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~v 85 (328)
+++|+++|||| |.+|++++..|++.|++|++..|+.++...+...+. ..+ + ++.| +.+ ....+|+|
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~-----~~~--~--~~~d---l~~~~~~~~Dil 428 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIG-----GKA--L--SLTD---LDNYHPEDGMVL 428 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTT-----C-C--E--ETTT---TTTC--CCSEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----Cce--e--eHHH---hhhccccCceEE
Confidence 45789999999 799999999999999999999998766555444321 111 1 1112 222 12358999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
||+++.
T Consensus 429 VN~agv 434 (523)
T 2o7s_A 429 ANTTSM 434 (523)
T ss_dssp EECSST
T ss_pred EECCCC
Confidence 999985
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0002 Score=61.80 Aligned_cols=74 Identities=23% Similarity=0.201 Sum_probs=51.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
.+++|+|+||+|.+|...+..+...|++|+++++++++.+....+ + ... ..|..+.+++.+.++++|+||+
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g----a~~-~~~~~~~~~~~~~~~~~d~vid 195 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----G----AEE-AATYAEVPERAKAWGGLDLVLE 195 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----T----CSE-EEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----C----CCE-EEECCcchhHHHHhcCceEEEE
Confidence 478999999999999999999988999999999987665443221 1 111 1243331223333478999999
Q ss_pred ccCC
Q 020266 88 TASP 91 (328)
Q Consensus 88 ~a~~ 91 (328)
+|.
T Consensus 196 -~g~ 198 (302)
T 1iz0_A 196 -VRG 198 (302)
T ss_dssp -CSC
T ss_pred -CCH
Confidence 874
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00018 Score=62.78 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=52.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh---hC--Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI---VD--GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~--~~ 82 (328)
.+++|+|+||+|.+|...+..+...|.+|+++++++++.+....+ + .. ...|..+.+..+.+ .. ++
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----G----a~-~~~~~~~~~~~~~~~~~~~~~g~ 210 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----G----AW-ETIDYSHEDVAKRVLELTDGKKC 210 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CC-EEEeCCCccHHHHHHHHhCCCCc
Confidence 478999999999999999999888999999999976655443322 1 11 11344444433333 22 68
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+||+++|.
T Consensus 211 Dvvid~~g~ 219 (325)
T 3jyn_A 211 PVVYDGVGQ 219 (325)
T ss_dssp EEEEESSCG
T ss_pred eEEEECCCh
Confidence 999999873
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00043 Score=57.50 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=28.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEE-EecCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPN 44 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~~ 44 (328)
+|+||.|+|+ |.+|+.+++.+.++++++.+ ++|+..
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~~ 38 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTPK 38 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCC
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCcc
Confidence 3678999999 99999999999998777655 455543
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00084 Score=59.13 Aligned_cols=96 Identities=13% Similarity=0.158 Sum_probs=62.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh---h--CCcc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI---V--DGCD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~--~~~d 83 (328)
+++|+|+||+|.||...+..+...|.+|+++++++++.+.+..+ + ... ..|..+.+....+ . +++|
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~----G----a~~-~~~~~~~~~~~~v~~~~~~~g~D 235 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDI----G----AAH-VLNEKAPDFEATLREVMKAEQPR 235 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHH----T----CSE-EEETTSTTHHHHHHHHHHHHCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CCE-EEECCcHHHHHHHHHHhcCCCCc
Confidence 37899999999999999998888899999999987765544332 1 111 1244443322222 2 2799
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
+||+++|. .. +...++.++.. +++|.+++.
T Consensus 236 ~vid~~g~----------~~-------~~~~~~~l~~~---G~iv~~G~~ 265 (349)
T 3pi7_A 236 IFLDAVTG----------PL-------ASAIFNAMPKR---ARWIIYGRL 265 (349)
T ss_dssp EEEESSCH----------HH-------HHHHHHHSCTT---CEEEECCCS
T ss_pred EEEECCCC----------hh-------HHHHHhhhcCC---CEEEEEecc
Confidence 99999873 11 12334444443 688988864
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=9.8e-05 Score=62.68 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=51.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++|+++|+|+ |..|++++..|.+.|. +|.+..|+.++...+.. .+..+ ..+++.+++.++|+|
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~---------~~~~~-----~~~~~~~~~~~aDiV 179 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWSL---------NINKI-----NLSHAESHLDEFDII 179 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS---------CCEEE-----CHHHHHHTGGGCSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH---------hcccc-----cHhhHHHHhcCCCEE
Confidence 35789999996 8999999999999998 89999998776554321 12221 223456667789999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|++...
T Consensus 180 InaTp~ 185 (277)
T 3don_A 180 INTTPA 185 (277)
T ss_dssp EECCC-
T ss_pred EECccC
Confidence 998653
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00057 Score=57.87 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=52.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++|+++|+|+ |.+|++++..|.+.|. +|.+..|+.++...+...+.. ..+..+.. +++.. .++|+|
T Consensus 118 l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~----~~~~~~~~-----~~l~~--~~~Div 185 (272)
T 3pwz_A 118 LRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH----SRLRISRY-----EALEG--QSFDIV 185 (272)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC----TTEEEECS-----GGGTT--CCCSEE
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc----CCeeEeeH-----HHhcc--cCCCEE
Confidence 45889999997 8899999999999995 899999998777666554422 13444322 12221 578999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|++...
T Consensus 186 InaTp~ 191 (272)
T 3pwz_A 186 VNATSA 191 (272)
T ss_dssp EECSSG
T ss_pred EECCCC
Confidence 998653
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00067 Score=57.69 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=53.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++++++|+|+ |.+|+.++..|.+.|. +|.+..|+.++.+.+...+.... .+..+..+ ++..++|+|
T Consensus 124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~~~~--------~l~~~aDiI 191 (281)
T 3o8q_A 124 LKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQAFE--------QLKQSYDVI 191 (281)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEEEGG--------GCCSCEEEE
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEeeHH--------HhcCCCCEE
Confidence 45889999997 8899999999999995 99999999877766655543221 34443221 112578999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|++...
T Consensus 192 InaTp~ 197 (281)
T 3o8q_A 192 INSTSA 197 (281)
T ss_dssp EECSCC
T ss_pred EEcCcC
Confidence 998754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00028 Score=62.11 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=53.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc---hHHhh--CC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS---FDSIV--DG 81 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~--~~ 81 (328)
.+++|+|+||+|.||..+++.+... |++|+++++++++.+....+ + .. ...|..+.+. +.++. .+
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g--~~---~~~~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----G--AD---YVINASMQDPLAEIRRITESKG 240 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----T--CS---EEEETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C--CC---EEecCCCccHHHHHHHHhcCCC
Confidence 4789999999999999999999998 99999999876554433221 1 11 1235555443 34444 36
Q ss_pred ccEEEEccCC
Q 020266 82 CDGVCHTASP 91 (328)
Q Consensus 82 ~d~vih~a~~ 91 (328)
+|+||+++|.
T Consensus 241 ~d~vi~~~g~ 250 (347)
T 1jvb_A 241 VDAVIDLNNS 250 (347)
T ss_dssp EEEEEESCCC
T ss_pred ceEEEECCCC
Confidence 9999999984
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00025 Score=63.14 Aligned_cols=76 Identities=16% Similarity=0.097 Sum_probs=55.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+++|+|+|+ |-||..+++.+...|.+|++.+|++++.+.+..... ..+. .+..+.+++.+++.++|+||
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g-----~~~~---~~~~~~~~l~~~l~~aDvVi 236 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFC-----GRIH---TRYSSAYELEGAVKRADLVI 236 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT-----TSSE---EEECCHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcC-----CeeE---eccCCHHHHHHHHcCCCEEE
Confidence 46889999998 999999999999999999999998765444333221 1111 12234456777778899999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
.+++.
T Consensus 237 ~~~~~ 241 (377)
T 2vhw_A 237 GAVLV 241 (377)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 98864
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00049 Score=60.45 Aligned_cols=74 Identities=26% Similarity=0.306 Sum_probs=51.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc---hHHhhC--Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS---FDSIVD--GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~--~~ 82 (328)
.+++|||+||+|.||...+..+...|.+|+++++++++.+....+ + .. ..+ |.. .+. +.++.. ++
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g--a~-~v~--~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----G--AD-IVL--PLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----T--CS-EEE--ESS-TTHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----C--Cc-EEe--cCc-hhHHHHHHHHhCCCCc
Confidence 478999999999999999999999999999999987765543332 1 11 122 333 222 222322 59
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+||+++|.
T Consensus 229 Dvvid~~g~ 237 (342)
T 4eye_A 229 DMVVDPIGG 237 (342)
T ss_dssp EEEEESCC-
T ss_pred eEEEECCch
Confidence 999999884
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00027 Score=61.54 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=51.4
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
...++|+|.|+| +|.+|..+++.|++.|++|++.+|++++.+.+... ++.. ..++.++++++|+
T Consensus 27 ~~~~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~--------g~~~-------~~~~~e~~~~aDv 90 (320)
T 4dll_A 27 SDPYARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTPARAASLAAL--------GATI-------HEQARAAARDADI 90 (320)
T ss_dssp --CCCSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT--------TCEE-------ESSHHHHHTTCSE
T ss_pred cccCCCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHC--------CCEe-------eCCHHHHHhcCCE
Confidence 344578999998 59999999999999999999999987665543221 2222 2456778888999
Q ss_pred EEEcc
Q 020266 85 VCHTA 89 (328)
Q Consensus 85 vih~a 89 (328)
||-+.
T Consensus 91 Vi~~v 95 (320)
T 4dll_A 91 VVSML 95 (320)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 99765
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.003 Score=54.32 Aligned_cols=112 Identities=10% Similarity=0.122 Sum_probs=70.9
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.+++|.|+|| |.+|..++..|+..|+ +|..++++++.......+.... .++++.. .| + +.++++|+|
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~--~~~i~~t-~d------~-~~l~~aD~V 81 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFN--LPNVEIS-KD------L-SASAHSKVV 81 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHT--CTTEEEE-SC------G-GGGTTCSEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhc--CCCeEEe-CC------H-HHHCCCCEE
Confidence 3678999996 9999999999999998 9999999774211111111111 1244442 22 3 457889999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|-.++.. .... ...+....|+.-.+.+++.+.+......+|.+|-
T Consensus 82 i~aag~~-~pG~-tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 82 IFTVNSL-GSSQ-SYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp EECCCC-----C-CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred EEcCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 9999873 2222 2336677898888899888887633334555554
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00031 Score=61.47 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=63.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh---h--CCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI---V--DGC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~--~~~ 82 (328)
.+++|||+||+|.||...+..+...|.+|+++++++++.+....+ + .. ...|..+.+....+ . .++
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g----a~-~~~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----G----AE-YLINASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T----CS-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----Cc-EEEeCCCchHHHHHHHHhCCCCc
Confidence 478999999999999999999999999999999976554432221 1 11 11344444433332 2 268
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
|+||+++|. .. ....++.++.. +++|.++..
T Consensus 219 D~vid~~g~----------~~-------~~~~~~~l~~~---G~iv~~G~~ 249 (334)
T 3qwb_A 219 DASFDSVGK----------DT-------FEISLAALKRK---GVFVSFGNA 249 (334)
T ss_dssp EEEEECCGG----------GG-------HHHHHHHEEEE---EEEEECCCT
T ss_pred eEEEECCCh----------HH-------HHHHHHHhccC---CEEEEEcCC
Confidence 999999873 11 22344444443 588888763
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00076 Score=60.35 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=54.3
Q ss_pred Cccccc--CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 1 MSSVAA--AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 1 ~~~~~~--~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
|+.|+. +.+|+|+|+|+ |.+|+.+++.+.+.|++|++++.++..... . -.-..+..|..|.+.+.++
T Consensus 4 ~~~m~~~~~~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~~~~~~~~---~-------~ad~~~~~~~~d~~~l~~~ 72 (389)
T 3q2o_A 4 MLDMTRIILPGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDPTKNSPCA---Q-------VADIEIVASYDDLKAIQHL 72 (389)
T ss_dssp ---CCCCCCTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTT---T-------TCSEEEECCTTCHHHHHHH
T ss_pred cccccccCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchH---H-------hCCceEecCcCCHHHHHHH
Confidence 444443 35789999995 889999999999999999999876543221 0 0113455788888888888
Q ss_pred hCCccEEEE
Q 020266 79 VDGCDGVCH 87 (328)
Q Consensus 79 ~~~~d~vih 87 (328)
++.+|+|.-
T Consensus 73 ~~~~dvI~~ 81 (389)
T 3q2o_A 73 AEISDVVTY 81 (389)
T ss_dssp HHTCSEEEE
T ss_pred HHhCCEeee
Confidence 888998843
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0004 Score=60.14 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=51.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
..+||+|.|+| +|.+|..++..|++.|++|++.+|++++.+.+... ++.. ..+..++++++|+|
T Consensus 18 ~~~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------g~~~-------~~~~~~~~~~aDvv 81 (310)
T 3doj_A 18 GSHMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEH--------GASV-------CESPAEVIKKCKYT 81 (310)
T ss_dssp CCCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT--------TCEE-------CSSHHHHHHHCSEE
T ss_pred cccCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC--------CCeE-------cCCHHHHHHhCCEE
Confidence 44578999998 69999999999999999999999988776554321 1221 24566777778999
Q ss_pred EEcc
Q 020266 86 CHTA 89 (328)
Q Consensus 86 ih~a 89 (328)
|-+.
T Consensus 82 i~~v 85 (310)
T 3doj_A 82 IAML 85 (310)
T ss_dssp EECC
T ss_pred EEEc
Confidence 8765
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0004 Score=59.35 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=51.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhcc-------C---CCCcEEEEEccCCCcCchHH
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD-------G---ASERLQLFKANLLEEGSFDS 77 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-------~---~~~~~~~~~~Dl~~~~~~~~ 77 (328)
++++|.|+|+ |.+|+.++..|++.|++|++.+|+++..+.....+... . ......-....+.-..++.+
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~ 81 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ 81 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence 3578999985 99999999999999999999999876655433221000 0 00000000000111245667
Q ss_pred hhCCccEEEEccC
Q 020266 78 IVDGCDGVCHTAS 90 (328)
Q Consensus 78 ~~~~~d~vih~a~ 90 (328)
+++++|+||-+..
T Consensus 82 ~~~~aDlVi~av~ 94 (283)
T 4e12_A 82 AVKDADLVIEAVP 94 (283)
T ss_dssp HTTTCSEEEECCC
T ss_pred HhccCCEEEEecc
Confidence 7889999998764
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00023 Score=62.91 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=51.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++|+|.|+|+ |.+|..++..|.+.|++|.+.+|+++..+.+..........+++.+ ...+.-..++.++++++|+||-
T Consensus 28 ~~mkI~VIGa-G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l-~~~i~~t~d~~ea~~~aDvVil 105 (356)
T 3k96_A 28 FKHPIAILGA-GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPF-PETLKAYCDLKASLEGVTDILI 105 (356)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCC-CTTEEEESCHHHHHTTCCEEEE
T ss_pred cCCeEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCcc-CCCeEEECCHHHHHhcCCEEEE
Confidence 3568999995 9999999999999999999999987655554332111000111111 1111112456677888999986
Q ss_pred cc
Q 020266 88 TA 89 (328)
Q Consensus 88 ~a 89 (328)
+.
T Consensus 106 aV 107 (356)
T 3k96_A 106 VV 107 (356)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00034 Score=61.99 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=63.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-----CCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DGC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 82 (328)
.+++|||+||+|.+|..+++.+...|++|+++++++++.+.+..+ + ... ..|..+.+ +.+.+ .++
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----G----a~~-~~~~~~~~-~~~~~~~~~~~g~ 232 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL----G----CDR-PINYKTEP-VGTVLKQEYPEGV 232 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T----CSE-EEETTTSC-HHHHHHHHCTTCE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc----C----CcE-EEecCChh-HHHHHHHhcCCCC
Confidence 478999999999999999999999999999999876554433221 1 111 12444333 22222 268
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
|+||++++. . .....++.++.. +++|.+++..
T Consensus 233 D~vid~~g~----------~-------~~~~~~~~l~~~---G~iv~~g~~~ 264 (362)
T 2c0c_A 233 DVVYESVGG----------A-------MFDLAVDALATK---GRLIVIGFIS 264 (362)
T ss_dssp EEEEECSCT----------H-------HHHHHHHHEEEE---EEEEECCCGG
T ss_pred CEEEECCCH----------H-------HHHHHHHHHhcC---CEEEEEeCCC
Confidence 999999872 1 123445555553 5899998853
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00071 Score=59.58 Aligned_cols=97 Identities=22% Similarity=0.222 Sum_probs=62.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh---hC--C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI---VD--G 81 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~--~ 81 (328)
.+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+....+ + ... ..|..+.+..+.+ .. +
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----G----a~~-~~~~~~~~~~~~v~~~~~g~g 236 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----G----ADY-VINPFEEDVVKEVMDITDGNG 236 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----T----CSE-EECTTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C----CCE-EECCCCcCHHHHHHHHcCCCC
Confidence 5778999999 9999999999888999 999999986554433221 1 111 1344443322222 22 6
Q ss_pred ccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
+|+||++++.. . .....++.++.. +++|.+++.
T Consensus 237 ~D~vid~~g~~---------~-------~~~~~~~~l~~~---G~iv~~g~~ 269 (348)
T 2d8a_A 237 VDVFLEFSGAP---------K-------ALEQGLQAVTPA---GRVSLLGLY 269 (348)
T ss_dssp EEEEEECSCCH---------H-------HHHHHHHHEEEE---EEEEECCCC
T ss_pred CCEEEECCCCH---------H-------HHHHHHHHHhcC---CEEEEEccC
Confidence 89999998730 1 123445555443 588888873
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00074 Score=56.54 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=66.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhh-------------------hhhccCCCCcEEEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRH-------------------LLALDGASERLQLFK 66 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 66 (328)
++.++|+|.|+ |.+|+++++.|+..|. ++.+++++.-+...+.+ .+......-+++.+.
T Consensus 26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 104 (251)
T 1zud_1 26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ 104 (251)
T ss_dssp HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 34689999997 6699999999999995 67887766533333222 222222223455555
Q ss_pred ccCCCcCchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 67 ANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 67 ~Dl~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
.++++ +.+.++++++|+||.+... ...-..+-++|.+. +. .+|+.+..
T Consensus 105 ~~~~~-~~~~~~~~~~DvVi~~~d~----------------~~~r~~l~~~~~~~-~~-p~i~~~~~ 152 (251)
T 1zud_1 105 QRLTG-EALKDAVARADVVLDCTDN----------------MATRQEINAACVAL-NT-PLITASAV 152 (251)
T ss_dssp SCCCH-HHHHHHHHHCSEEEECCSS----------------HHHHHHHHHHHHHT-TC-CEEEEEEE
T ss_pred ccCCH-HHHHHHHhcCCEEEECCCC----------------HHHHHHHHHHHHHh-CC-CEEEEecc
Confidence 55543 4566777889999987421 11223455666665 54 47776653
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00072 Score=59.70 Aligned_cols=80 Identities=20% Similarity=0.102 Sum_probs=50.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccC-CCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL-LEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~d~vih 87 (328)
+|+|.|+|+ |.+|..++..|.+.|++|.+++|+++..+.+............... ...+ ....++.++++++|+||-
T Consensus 4 ~mki~iiG~-G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~vi~ 81 (359)
T 1bg6_A 4 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAG-TAHPDLLTSDIGLAVKDADVILI 81 (359)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCE-EECCSEEESCHHHHHTTCSEEEE
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEecccccc-ccccceecCCHHHHHhcCCEEEE
Confidence 468999996 9999999999999999999999987655544332110000000000 0111 112356666788999998
Q ss_pred ccC
Q 020266 88 TAS 90 (328)
Q Consensus 88 ~a~ 90 (328)
+..
T Consensus 82 ~v~ 84 (359)
T 1bg6_A 82 VVP 84 (359)
T ss_dssp CSC
T ss_pred eCC
Confidence 764
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.001 Score=60.49 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=50.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEE-E-----EccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQL-F-----KANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~-----~~Dl~~~~~~~~~~~~~d 83 (328)
|+|.|+| +|++|..++..|++.|++|++++|++++.+.+........ .+.+.- + .+.+.-..++.++++++|
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~-e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD 78 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIV-EPGLEALLQQGRQTGRLSGTTDFKKAVLDSD 78 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSC-CTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcC-CCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence 4799998 6999999999999999999999998766554433110000 000000 0 011222234566677899
Q ss_pred EEEEccCC
Q 020266 84 GVCHTASP 91 (328)
Q Consensus 84 ~vih~a~~ 91 (328)
+||-+...
T Consensus 79 vviiaVpt 86 (436)
T 1mv8_A 79 VSFICVGT 86 (436)
T ss_dssp EEEECCCC
T ss_pred EEEEEcCC
Confidence 99998754
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00047 Score=62.37 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=55.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.+.+++|+|+|+ |.+|+.+++.+.+.|++|++++.++..... .. .-.++..|..|.+.+.++.+++|+|
T Consensus 32 ~~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~---~~-------ad~~~~~~~~d~~~l~~~a~~~D~V 100 (419)
T 4e4t_A 32 ILPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPASPAG---AV-------ADRHLRAAYDDEAALAELAGLCEAV 100 (419)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTCHHH---HH-------SSEEECCCTTCHHHHHHHHHHCSEE
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcCchh---hh-------CCEEEECCcCCHHHHHHHHhcCCEE
Confidence 345789999995 899999999999999999999866544322 11 1135568889999898888899999
Q ss_pred EE
Q 020266 86 CH 87 (328)
Q Consensus 86 ih 87 (328)
+.
T Consensus 101 ~~ 102 (419)
T 4e4t_A 101 ST 102 (419)
T ss_dssp EE
T ss_pred EE
Confidence 83
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00091 Score=56.35 Aligned_cols=65 Identities=20% Similarity=0.089 Sum_probs=49.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+++++|+|+ |..|++++..|.+.|.+|.+..|+.++...+. .+. +... ++. ++ .++|+|||+
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~-------~~~~--~~~---~l----~~~DiVIna 179 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLG-------CDCF--MEP---PK----SAFDLIINA 179 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHT-------CEEE--SSC---CS----SCCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCC-------CeEe--cHH---Hh----ccCCEEEEc
Confidence 689999996 99999999999999999999999998887766 321 2222 222 22 168999998
Q ss_pred cCC
Q 020266 89 ASP 91 (328)
Q Consensus 89 a~~ 91 (328)
...
T Consensus 180 Tp~ 182 (269)
T 3phh_A 180 TSA 182 (269)
T ss_dssp CTT
T ss_pred ccC
Confidence 754
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.001 Score=61.18 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=38.1
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHC--CCeEEEEecCCCChhhh
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDPNDPKKT 49 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~ 49 (328)
|+.+..+++|+|.|+| +|++|..++..|++. |++|++++|++++.+.+
T Consensus 1 m~~~~~~~~mkI~VIG-~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l 50 (481)
T 2o3j_A 1 MTDQVFGKVSKVVCVG-AGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEW 50 (481)
T ss_dssp --CCSSCCCCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred CCCCCCCCCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 5555555678999998 599999999999998 79999999987665543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0005 Score=59.32 Aligned_cols=67 Identities=12% Similarity=-0.006 Sum_probs=48.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+|+|.|+| +|.+|..++..|++.|++|++.+|++++.+.+... +.... ..+..++++++|+||-+
T Consensus 7 ~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~~------~~~~~e~~~~aDvvi~~ 71 (303)
T 3g0o_A 7 DFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE--------GACGA------AASAREFAGVVDALVIL 71 (303)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TCSEE------ESSSTTTTTTCSEEEEC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc--------CCccc------cCCHHHHHhcCCEEEEE
Confidence 56899998 69999999999999999999999987665554332 11111 12334456778998876
Q ss_pred cC
Q 020266 89 AS 90 (328)
Q Consensus 89 a~ 90 (328)
..
T Consensus 72 vp 73 (303)
T 3g0o_A 72 VV 73 (303)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00073 Score=59.39 Aligned_cols=71 Identities=24% Similarity=0.295 Sum_probs=48.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchH---Hhh--CCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFD---SIV--DGC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~--~~~ 82 (328)
.+.+|||+||+|.+|...+..+...|.+|+++ +++++.+....+ +... .| .+.+... +.. .++
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l--------Ga~~--i~-~~~~~~~~~~~~~~~~g~ 217 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL--------GATP--ID-ASREPEDYAAEHTAGQGF 217 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH--------TSEE--EE-TTSCHHHHHHHHHTTSCE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc--------CCCE--ec-cCCCHHHHHHHHhcCCCc
Confidence 47899999999999999999999999999998 655443332221 1223 34 3332222 222 269
Q ss_pred cEEEEccC
Q 020266 83 DGVCHTAS 90 (328)
Q Consensus 83 d~vih~a~ 90 (328)
|+||+++|
T Consensus 218 D~vid~~g 225 (343)
T 3gaz_A 218 DLVYDTLG 225 (343)
T ss_dssp EEEEESSC
T ss_pred eEEEECCC
Confidence 99999987
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00068 Score=58.27 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=50.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+|+|.|+| +|.+|..++..|++.||+|++.+|++++.+.+... ++.. ..++.++++ +|+||-+
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~-------~~~~~~~~~-aDvvi~~ 77 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEA--------GATL-------ADSVADVAA-ADLIHIT 77 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHT--------TCEE-------CSSHHHHTT-SSEEEEC
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC--------CCEE-------cCCHHHHHh-CCEEEEE
Confidence 46899998 69999999999999999999999998876654332 2221 246777888 9999977
Q ss_pred cC
Q 020266 89 AS 90 (328)
Q Consensus 89 a~ 90 (328)
..
T Consensus 78 vp 79 (296)
T 3qha_A 78 VL 79 (296)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=56.92 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDP 43 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~ 43 (328)
|++|+|+||||++|+.|++.|.++ .+++..+..+.
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~ 39 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSA 39 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEET
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecC
Confidence 578999999999999999999985 56887775543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0011 Score=58.85 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=54.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
.+.+|||+|+ |.||...+..+...|.+|+++++++++.+...+.+ + .. ...|..+.+.+.++..++|+||+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l---G----a~-~v~~~~~~~~~~~~~~~~D~vid 257 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF---G----AD-SFLVSRDQEQMQAAAGTLDGIID 257 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS---C----CS-EEEETTCHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---C----Cc-eEEeccCHHHHHHhhCCCCEEEE
Confidence 5789999996 99999999998889999999999876544322121 1 11 11355555556666668999999
Q ss_pred ccCC
Q 020266 88 TASP 91 (328)
Q Consensus 88 ~a~~ 91 (328)
+++.
T Consensus 258 ~~g~ 261 (366)
T 1yqd_A 258 TVSA 261 (366)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 9874
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.001 Score=57.17 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=32.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
+++|.|+||+|.+|..++..|.+.|++|++.+|++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 56899999999999999999999999999998875
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0052 Score=46.19 Aligned_cols=88 Identities=19% Similarity=0.244 Sum_probs=56.3
Q ss_pred CCCCeEEEECCc---cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 7 AAGKVVCVTGAS---GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 7 ~~~~~vlVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
.+.++|.|.|+| |-+|..+++.|++.|++|+.+..+..+. ..+.-+.++.++.+.+|
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i--------------------~G~~~~~s~~el~~~vD 71 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI--------------------EGLKCYRSVRELPKDVD 71 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE--------------------TTEECBSSGGGSCTTCC
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE--------------------CCeeecCCHHHhCCCCC
Confidence 457899999997 8999999999999999977666553211 12223345566666789
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+++-+... .....+++.+.+. +++.+|..+|
T Consensus 72 lvii~vp~-----------------~~v~~v~~~~~~~-g~~~i~~~~~ 102 (138)
T 1y81_A 72 VIVFVVPP-----------------KVGLQVAKEAVEA-GFKKLWFQPG 102 (138)
T ss_dssp EEEECSCH-----------------HHHHHHHHHHHHT-TCCEEEECTT
T ss_pred EEEEEeCH-----------------HHHHHHHHHHHHc-CCCEEEEcCc
Confidence 88865421 1123445555555 6676666554
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00099 Score=57.74 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=48.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHH-hhCCc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-IVDGC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~ 82 (328)
.+++|+|.|+| .|.+|..+++.|.+.|+ +|++.+|+++..+..... + -+.... .+..+ +++++
T Consensus 30 ~~~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G---~~~~~~------~~~~~~~~~~a 95 (314)
T 3ggo_A 30 SLSMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G---IIDEGT------TSIAKVEDFSP 95 (314)
T ss_dssp CCSCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T---SCSEEE------SCTTGGGGGCC
T ss_pred hcCCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----C---Ccchhc------CCHHHHhhccC
Confidence 33457899999 79999999999999999 999999987554432211 1 000011 23344 57789
Q ss_pred cEEEEccC
Q 020266 83 DGVCHTAS 90 (328)
Q Consensus 83 d~vih~a~ 90 (328)
|+||-+..
T Consensus 96 DvVilavp 103 (314)
T 3ggo_A 96 DFVMLSSP 103 (314)
T ss_dssp SEEEECSC
T ss_pred CEEEEeCC
Confidence 99997753
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00072 Score=60.82 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=53.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
..+++|+|+|+ |.+|+.+++.|...|. +|++.+|+.++...+...+ +... .+.+++.+++.++|+|
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~-------g~~~-----~~~~~l~~~l~~aDvV 231 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-------GGEA-----VRFDELVDHLARSDVV 231 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-------TCEE-----CCGGGHHHHHHTCSEE
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-------CCce-----ecHHhHHHHhcCCCEE
Confidence 46899999997 9999999999999998 8999999876543433322 1221 1234567777889999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|.+.+.
T Consensus 232 i~at~~ 237 (404)
T 1gpj_A 232 VSATAA 237 (404)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 999754
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0011 Score=59.66 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|++++|+|+|+ |.+|+.+++.+.+.|++|++++ ++..... .. ......+.+|..|.+.+.++.+.+|+|+
T Consensus 22 m~~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d-~~~~p~~---~~-----ad~~~~~~~~~~d~~~l~~~a~~~d~i~ 91 (403)
T 3k5i_A 22 WNSRKVGVLGG-GQLGRMLVESANRLNIQVNVLD-ADNSPAK---QI-----SAHDGHVTGSFKEREAVRQLAKTCDVVT 91 (403)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE-STTCTTG---GG-----CCSSCCEESCTTCHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE-CCCCcHH---Hh-----ccccceeecCCCCHHHHHHHHHhCCEEE
Confidence 45789999996 8999999999999999999999 5433221 10 0112356789999999999999999887
Q ss_pred E
Q 020266 87 H 87 (328)
Q Consensus 87 h 87 (328)
-
T Consensus 92 ~ 92 (403)
T 3k5i_A 92 A 92 (403)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00027 Score=62.76 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=49.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|+|++|.|+|+ |.+|..++..|++.|++|.+.+|+++..+.+..........++.. +...+.-..+..++++++|+||
T Consensus 13 m~M~kI~iIG~-G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~aDvVi 90 (366)
T 1evy_A 13 LYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQ-LASNITFTSDVEKAYNGAEIIL 90 (366)
T ss_dssp CCEEEEEEECC-SHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCB-CCTTEEEESCHHHHHTTCSSEE
T ss_pred hccCeEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccc-cccceeeeCCHHHHHcCCCEEE
Confidence 33448999996 999999999999999999999998665554433210000000110 0000111134556677899998
Q ss_pred Ecc
Q 020266 87 HTA 89 (328)
Q Consensus 87 h~a 89 (328)
-+.
T Consensus 91 lav 93 (366)
T 1evy_A 91 FVI 93 (366)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00079 Score=59.05 Aligned_cols=97 Identities=23% Similarity=0.197 Sum_probs=63.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchH---HhhCCccE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFD---SIVDGCDG 84 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~~d~ 84 (328)
.+++|||+|| |.+|..+++.+...|.+|++++|++++.+....+ + ... ..|..+.+... ++..++|+
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----G----a~~-~~d~~~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----G----ADL-VVNPLKEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T----CSE-EECTTTSCHHHHHHHHHSSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHC----C----CCE-EecCCCccHHHHHHHHhCCCCE
Confidence 4789999999 7799999999988999999999886554433221 1 111 24665543222 22257999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
||++++.. . .....++.++.. +++|.+++.
T Consensus 234 vid~~g~~---------~-------~~~~~~~~l~~~---G~~v~~g~~ 263 (339)
T 1rjw_A 234 AVVTAVSK---------P-------AFQSAYNSIRRG---GACVLVGLP 263 (339)
T ss_dssp EEESSCCH---------H-------HHHHHHHHEEEE---EEEEECCCC
T ss_pred EEECCCCH---------H-------HHHHHHHHhhcC---CEEEEeccc
Confidence 99998731 1 123445555443 578888763
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0015 Score=57.46 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=27.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEe
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASV 40 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 40 (328)
++++|.|.||||++|+.+++.|.++. .+|.++.
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~ 36 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS 36 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence 35789999999999999999998764 5777775
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0037 Score=56.40 Aligned_cols=120 Identities=17% Similarity=0.037 Sum_probs=66.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEE------EEEccCCCcCchHHhhCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ------LFKANLLEEGSFDSIVDG 81 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~Dl~~~~~~~~~~~~ 81 (328)
.|.+|.|+| +|++|..++..|++.||+|++++.++++.+.+.+-..... .++++ .-.+.++=-.+..+++..
T Consensus 20 ~m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~-Epgl~ell~~~~~~g~l~~tt~~~~ai~~ 97 (444)
T 3vtf_A 20 HMASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIY-EPGLEEALGRALSSGRLSFAESAEEAVAA 97 (444)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSC-CTTHHHHHHHHHHTTCEEECSSHHHHHHT
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCC-CCCHHHHHHHHHHcCCeeEEcCHHHHHhc
Confidence 477999998 7999999999999999999999988765544332110000 00000 000111112345666778
Q ss_pred ccEEEEccCCCCCCCCCcchhhhhHHHH-HHHHHHHHHhcCCCccEEEEecch
Q 020266 82 CDGVCHTASPFYHDAKDPQVELLDPAVK-GTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~N~~-~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
+|++|-+.+........+. . ..+. .+..+.+.++...+..-+|+=||+
T Consensus 98 ad~~~I~VpTP~~~d~~~D--l--~~v~~a~~~I~~~l~~~~~g~lVV~eSTV 146 (444)
T 3vtf_A 98 TDATFIAVGTPPAPDGSAD--L--RYVEAAARAVGRGIRAKGRWHLVVVKSTV 146 (444)
T ss_dssp SSEEEECCCCCBCTTSSBC--C--HHHHHHHHHHHHHHHHHCSCCEEEECSCC
T ss_pred CCceEEEecCCCCCCCCCC--c--HHHHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 9999988764332222221 1 1122 334444555432122346666775
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0011 Score=56.52 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=50.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC---eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY---TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
++|+|.|+|+ |.+|..++..|.+.|+ +|.+.+|++++.+.+...+ ++.. ..+..++++++|+
T Consensus 2 ~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~-------gi~~-------~~~~~~~~~~aDv 66 (280)
T 3tri_A 2 NTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC-------GVHT-------TQDNRQGALNADV 66 (280)
T ss_dssp CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT-------CCEE-------ESCHHHHHSSCSE
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc-------CCEE-------eCChHHHHhcCCe
Confidence 3578999996 9999999999999998 9999999887665544321 2222 1345667788999
Q ss_pred EEEcc
Q 020266 85 VCHTA 89 (328)
Q Consensus 85 vih~a 89 (328)
||-+.
T Consensus 67 Vilav 71 (280)
T 3tri_A 67 VVLAV 71 (280)
T ss_dssp EEECS
T ss_pred EEEEe
Confidence 99765
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0024 Score=56.82 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=49.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh--CCccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV--DGCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~d~v 85 (328)
.+.+|+|+||+|.+|...+..+...|.+|+++++ +++.+.+ +.+ + ... ..|..+.+..+++. .++|+|
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~~~-~~l---G----a~~-v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASELV-RKL---G----ADD-VIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHHH-HHT---T----CSE-EEETTSSCHHHHHHTSCCBSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHHHH-HHc---C----CCE-EEECCchHHHHHHhhcCCCCEE
Confidence 4789999999999999999988889999998874 3332222 211 1 111 12444443333333 379999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|+++|.
T Consensus 253 id~~g~ 258 (375)
T 2vn8_A 253 LDNVGG 258 (375)
T ss_dssp EESSCT
T ss_pred EECCCC
Confidence 999874
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0019 Score=55.52 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=52.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+++|+|+|+ |-+|+.+++.|...|.+|++.+|+.++...+.. . ++..+ +..++.++++++|+|+
T Consensus 155 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~----~----g~~~~-----~~~~l~~~l~~aDvVi 220 (300)
T 2rir_A 155 IHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLARITE----M----GLVPF-----HTDELKEHVKDIDICI 220 (300)
T ss_dssp STTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----T----TCEEE-----EGGGHHHHSTTCSEEE
T ss_pred CCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C----CCeEE-----chhhHHHHhhCCCEEE
Confidence 45899999995 999999999999999999999998654332211 1 22222 1245778888999999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
.+...
T Consensus 221 ~~~p~ 225 (300)
T 2rir_A 221 NTIPS 225 (300)
T ss_dssp ECCSS
T ss_pred ECCCh
Confidence 98764
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.003 Score=57.67 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=54.1
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
|..++.+++|+|+|.|. |-.|..+++.|.++|++|.+.++...........+.. .++++..+.-. + ++++
T Consensus 1 m~~~~~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~----~gi~~~~g~~~--~---~~~~ 70 (451)
T 3lk7_A 1 MKTITTFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLE----EGIKVVCGSHP--L---ELLD 70 (451)
T ss_dssp ---CCTTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHH----TTCEEEESCCC--G---GGGG
T ss_pred CcchhhcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHh----CCCEEEECCCh--H---Hhhc
Confidence 55556677899999998 8899999999999999999999865322111112211 25666665431 1 2345
Q ss_pred C-ccEEEEccCC
Q 020266 81 G-CDGVCHTASP 91 (328)
Q Consensus 81 ~-~d~vih~a~~ 91 (328)
+ +|.||...|.
T Consensus 71 ~~~d~vv~spgi 82 (451)
T 3lk7_A 71 EDFCYMIKNPGI 82 (451)
T ss_dssp SCEEEEEECTTS
T ss_pred CCCCEEEECCcC
Confidence 5 8999988775
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0026 Score=53.65 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=47.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+++|+|+++.+|+.++..|+..|.+|.+..|.. .++.+.++.+|+||
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t-----------------------------~~L~~~~~~ADIVI 208 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-----------------------------KDLSLYTRQADLII 208 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-----------------------------SCHHHHHTTCSEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc-----------------------------hhHHHHhhcCCEEE
Confidence 4689999999999999999999999999999887642 24566778899999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
..++.
T Consensus 209 ~Avg~ 213 (285)
T 3p2o_A 209 VAAGC 213 (285)
T ss_dssp ECSSC
T ss_pred ECCCC
Confidence 98875
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00072 Score=57.81 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=50.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||+|.|+| +|.+|..++..|++.||+|++.+|++++.+.+... ++.. ..+..++++++|+||-+
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~-------~~~~~~~~~~advvi~~ 64 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL--------GARQ-------ASSPAEVCAACDITIAM 64 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH--------TCEE-------CSCHHHHHHHCSEEEEC
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC--------CCee-------cCCHHHHHHcCCEEEEE
Confidence 45799998 79999999999999999999999998776654432 1211 24566777778999877
Q ss_pred cC
Q 020266 89 AS 90 (328)
Q Consensus 89 a~ 90 (328)
..
T Consensus 65 v~ 66 (287)
T 3pdu_A 65 LA 66 (287)
T ss_dssp CS
T ss_pred cC
Confidence 53
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.001 Score=58.74 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=47.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc---c
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC---D 83 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---d 83 (328)
|++|+|.|+| .|.+|..+++.|++.|++|.+.+|++++.+.+... + +....++.++++.+ |
T Consensus 20 m~~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~--------g-------~~~~~s~~e~~~~a~~~D 83 (358)
T 4e21_A 20 FQSMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLNVNAVQALERE--------G-------IAGARSIEEFCAKLVKPR 83 (358)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT--------T-------CBCCSSHHHHHHHSCSSC
T ss_pred hcCCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC--------C-------CEEeCCHHHHHhcCCCCC
Confidence 3467899998 69999999999999999999999987665543221 1 11223455555555 9
Q ss_pred EEEEcc
Q 020266 84 GVCHTA 89 (328)
Q Consensus 84 ~vih~a 89 (328)
+||-+.
T Consensus 84 vVi~~v 89 (358)
T 4e21_A 84 VVWLMV 89 (358)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 998765
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0016 Score=57.55 Aligned_cols=74 Identities=22% Similarity=0.158 Sum_probs=52.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCc-CchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~d~vi 86 (328)
.+.+|||+|+ |.+|...+..+...|.+|+++++++++.+....+ . ... ..|..+. +....+..++|+||
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l-G-------a~~-v~~~~~~~~~~~~~~~~~D~vi 248 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMKM-G-------ADH-YIATLEEGDWGEKYFDTFDLIV 248 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH-T-------CSE-EEEGGGTSCHHHHSCSCEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc-C-------CCE-EEcCcCchHHHHHhhcCCCEEE
Confidence 4789999999 9999999988888899999999988776554332 1 111 1233333 33333335799999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
.+++.
T Consensus 249 d~~g~ 253 (360)
T 1piw_A 249 VCASS 253 (360)
T ss_dssp ECCSC
T ss_pred ECCCC
Confidence 99875
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0019 Score=56.44 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=55.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC---CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+|++|.|.||||++|+.+++.|.+++ .++..+....+....+. . ....+.+. |+ +++. ++++|+
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~----~--~~~~i~~~--~~-~~~~----~~~vDv 68 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR----F--NGKTVRVQ--NV-EEFD----WSQVHI 68 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE----E--TTEEEEEE--EG-GGCC----GGGCSE
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee----e--cCceeEEe--cC-ChHH----hcCCCE
Confidence 35789999999999999999999883 46666653221111110 0 11123332 22 1222 257999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
||-+.+.. .+...+..+.+. ++ ++|-.|+..
T Consensus 69 Vf~a~g~~-----------------~s~~~a~~~~~~-G~-~vId~s~~~ 99 (336)
T 2r00_A 69 ALFSAGGE-----------------LSAKWAPIAAEA-GV-VVIDNTSHF 99 (336)
T ss_dssp EEECSCHH-----------------HHHHHHHHHHHT-TC-EEEECSSTT
T ss_pred EEECCCch-----------------HHHHHHHHHHHc-CC-EEEEcCCcc
Confidence 99876521 133445555555 55 688888853
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0011 Score=55.73 Aligned_cols=67 Identities=21% Similarity=0.136 Sum_probs=49.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||+|.|+| +|.+|+.+++.|.+.|++|.+.+|++++.+.+.... + +.-..+..++++++|+||-+
T Consensus 3 ~m~i~iiG-~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-------g-------~~~~~~~~~~~~~~D~Vi~~ 67 (259)
T 2ahr_A 3 AMKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-------A-------LPYAMSHQDLIDQVDLVILG 67 (259)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-------T-------CCBCSSHHHHHHTCSEEEEC
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc-------C-------CEeeCCHHHHHhcCCEEEEE
Confidence 46899999 699999999999999999999999866554433321 1 11123466667789999987
Q ss_pred cC
Q 020266 89 AS 90 (328)
Q Consensus 89 a~ 90 (328)
..
T Consensus 68 v~ 69 (259)
T 2ahr_A 68 IK 69 (259)
T ss_dssp SC
T ss_pred eC
Confidence 64
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0014 Score=55.93 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=49.6
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|.|+| +|.+|..+++.|.+.|++|++.+|++++.+.+... ++.. ..++.++++++|+||-+.
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~-------~~~~~~~~~~aDvvi~~v 65 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAAL--------GAER-------AATPCEVVESCPVTFAML 65 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT--------TCEE-------CSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC--------CCee-------cCCHHHHHhcCCEEEEEc
Confidence 5799999 59999999999999999999999988776554332 1221 245677777889998765
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00087 Score=56.96 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=50.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++|+|+|+|+ |.+|+.++..|.+.|++|.+.+|+.++.+.+...+ ++.. .+ ++.+.++++|+||+
T Consensus 128 ~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~-------g~~~-----~~--~~~~~~~~aDiVi~ 192 (275)
T 2hk9_A 128 KEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF-------PLEV-----VN--SPEEVIDKVQVIVN 192 (275)
T ss_dssp GGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS-------CEEE-----CS--CGGGTGGGCSEEEE
T ss_pred CCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc-------CCee-----eh--hHHhhhcCCCEEEE
Confidence 4689999995 89999999999999999999999865544432221 2221 11 34556678999999
Q ss_pred ccCC
Q 020266 88 TASP 91 (328)
Q Consensus 88 ~a~~ 91 (328)
+...
T Consensus 193 atp~ 196 (275)
T 2hk9_A 193 TTSV 196 (275)
T ss_dssp CSST
T ss_pred eCCC
Confidence 9865
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0025 Score=56.70 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=52.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||+|+|+|+ |.+|+.+++.|.+.|++|++++.++..... .. .-.++..|..|.+.+.++++++|.|+-.
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~~~~~--~~--------~~~~~~~~~~d~~~l~~~~~~~d~v~~~ 69 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPRSPAG--QV--------ADEQIVAGFFDSERIEDLVKGSDVTTYD 69 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTG--GG--------SSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchh--hh--------CceEEECCCCCHHHHHHHHhcCCEEEec
Confidence 478999997 899999999999999999999876543211 00 0134567888888888888889998853
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00071 Score=57.13 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=47.6
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCe-EEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
+|+|.|+|+ |.+|+.++..|.+.|++ |.+.+|+++..+.+.... ++.. ..++.++++++|+||-
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~~Dvvi~ 74 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV-------EAEY-------TTDLAEVNPYAKLYIV 74 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT-------TCEE-------ESCGGGSCSCCSEEEE
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc-------CCce-------eCCHHHHhcCCCEEEE
Confidence 468999996 99999999999999998 888888766554433321 1222 1234455678999997
Q ss_pred cc
Q 020266 88 TA 89 (328)
Q Consensus 88 ~a 89 (328)
+.
T Consensus 75 av 76 (266)
T 3d1l_A 75 SL 76 (266)
T ss_dssp CC
T ss_pred ec
Confidence 75
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0017 Score=55.71 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=44.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
+||-++| .|..|..+++.|++.||+|++.+|++++.+.+... +... .++..++++.+|+||-+-
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~--------G~~~-------~~s~~e~~~~~dvvi~~l 69 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKL--------GATV-------VENAIDAITPGGIVFSVL 69 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEC-------CTTTTT--------TCEE-------CSSGGGGCCTTCEEEECC
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc--------CCeE-------eCCHHHHHhcCCceeeec
Confidence 5799998 79999999999999999999999998877654321 2222 245667788899998764
Q ss_pred C
Q 020266 90 S 90 (328)
Q Consensus 90 ~ 90 (328)
.
T Consensus 70 ~ 70 (297)
T 4gbj_A 70 A 70 (297)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0025 Score=54.66 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=51.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+++|+|+| .|-+|+.+++.|...|.+|++.+|+.++...... . ++..+ +.+++.++++++|+|+
T Consensus 153 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~----~----g~~~~-----~~~~l~~~l~~aDvVi 218 (293)
T 3d4o_A 153 IHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLLARIAE----M----GMEPF-----HISKAAQELRDVDVCI 218 (293)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----T----TSEEE-----EGGGHHHHTTTCSEEE
T ss_pred CCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----C----CCeec-----ChhhHHHHhcCCCEEE
Confidence 4689999999 5999999999999999999999998654332211 1 22222 2345777888999999
Q ss_pred EccC
Q 020266 87 HTAS 90 (328)
Q Consensus 87 h~a~ 90 (328)
.+..
T Consensus 219 ~~~p 222 (293)
T 3d4o_A 219 NTIP 222 (293)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 9874
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0016 Score=55.96 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=51.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||||-++| .|-.|..+++.|++.||+|++.+|++++.+.+... +... .++..++++.+|+||-|
T Consensus 3 M~kIgfIG-lG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~--------Ga~~-------a~s~~e~~~~~dvv~~~ 66 (300)
T 3obb_A 3 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA--------GASA-------ARSARDAVQGADVVISM 66 (300)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT--------TCEE-------CSSHHHHHTTCSEEEEC
T ss_pred cCEEEEee-ehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHc--------CCEE-------cCCHHHHHhcCCceeec
Confidence 67899999 79999999999999999999999998776664432 1221 24677788888988876
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
-
T Consensus 67 l 67 (300)
T 3obb_A 67 L 67 (300)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00099 Score=57.71 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=46.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCC--CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP--NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
.+++|+|.|+| +|.+|..++..|++.|+ +|++.+|++ +..+.+... ++.. ..+..++++++
T Consensus 21 ~~~~~~I~iIG-~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~--------g~~~-------~~~~~e~~~~a 84 (312)
T 3qsg_A 21 QSNAMKLGFIG-FGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEEL--------GVSC-------KASVAEVAGEC 84 (312)
T ss_dssp ----CEEEEEC-CSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHT--------TCEE-------CSCHHHHHHHC
T ss_pred cCCCCEEEEEC-ccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHC--------CCEE-------eCCHHHHHhcC
Confidence 34468999998 59999999999999999 999999974 332222111 2221 23566677789
Q ss_pred cEEEEccC
Q 020266 83 DGVCHTAS 90 (328)
Q Consensus 83 d~vih~a~ 90 (328)
|+||-+..
T Consensus 85 DvVi~~vp 92 (312)
T 3qsg_A 85 DVIFSLVT 92 (312)
T ss_dssp SEEEECSC
T ss_pred CEEEEecC
Confidence 99997654
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00081 Score=56.28 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=50.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
++ +++|+|+ |..|++++..|.+.|. +|.+..|+.++.+.+... +... ..+++.+.++++|+||
T Consensus 108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~---------~~~~-----~~~~~~~~~~~aDiVI 171 (253)
T 3u62_A 108 KE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDFP---------VKIF-----SLDQLDEVVKKAKSLF 171 (253)
T ss_dssp CS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSS---------CEEE-----EGGGHHHHHHTCSEEE
T ss_pred CC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH---------cccC-----CHHHHHhhhcCCCEEE
Confidence 46 8999996 9999999999999998 899999987665443221 1111 2245666778899999
Q ss_pred EccC
Q 020266 87 HTAS 90 (328)
Q Consensus 87 h~a~ 90 (328)
++..
T Consensus 172 natp 175 (253)
T 3u62_A 172 NTTS 175 (253)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 9874
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.021 Score=51.79 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=53.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEE------EEccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQL------FKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~~~~~~~~~~~~~d 83 (328)
-+|.|+| +|++|..++..|++.||+|++.+|++++.+.+........ .+++.- ..+.++--.++.++++++|
T Consensus 9 ~~~~vIG-lG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~-epgl~~~~~~~~~~g~l~~ttd~~ea~~~aD 86 (446)
T 4a7p_A 9 VRIAMIG-TGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIY-EPGLDALVASNVKAGRLSFTTDLAEGVKDAD 86 (446)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSC-CTTHHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred eEEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCcc-CCCHHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence 4688999 6999999999999999999999999988776544211100 011100 0011111245667788899
Q ss_pred EEEEccCC
Q 020266 84 GVCHTASP 91 (328)
Q Consensus 84 ~vih~a~~ 91 (328)
+||-+.+.
T Consensus 87 vvii~Vpt 94 (446)
T 4a7p_A 87 AVFIAVGT 94 (446)
T ss_dssp EEEECCCC
T ss_pred EEEEEcCC
Confidence 99988654
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0018 Score=56.05 Aligned_cols=66 Identities=24% Similarity=0.208 Sum_probs=48.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
.|+|.|+| +|.+|..++..|.+.|++|.+.+|+++..+.+... ++.. ..+..++++++|+||-+
T Consensus 30 ~~~I~iIG-~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------g~~~-------~~~~~~~~~~~DvVi~a 93 (316)
T 2uyy_A 30 DKKIGFLG-LGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQE--------GARL-------GRTPAEVVSTCDITFAC 93 (316)
T ss_dssp SSCEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHT--------TCEE-------CSCHHHHHHHCSEEEEC
T ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHc--------CCEE-------cCCHHHHHhcCCEEEEe
Confidence 47899999 59999999999999999999999987665543321 1221 12355666778999877
Q ss_pred cC
Q 020266 89 AS 90 (328)
Q Consensus 89 a~ 90 (328)
..
T Consensus 94 v~ 95 (316)
T 2uyy_A 94 VS 95 (316)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.014 Score=48.38 Aligned_cols=159 Identities=14% Similarity=0.060 Sum_probs=89.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----Ccc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d 83 (328)
++|.|+|++|-+|+.+++.+.+. ++++.+......+.+. .... +.. +..|++.++...+.+. +++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~---~~~~-----~~D-vvIDfT~p~a~~~~~~~a~~~g~~ 71 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSL---LTDG-----NTE-VVIDFTHPDVVMGNLEFLIDNGIH 71 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHH---HHHT-----TCC-EEEECSCTTTHHHHHHHHHHTTCE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHH---Hhcc-----CCc-EEEEccChHHHHHHHHHHHHcCCC
Confidence 47999999999999999999876 8998876654333222 1110 122 5578888887665443 678
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhcc--------CCCCCCCCccccCCCC-
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN--------TGKPRTPDVVVDETWF- 154 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~--------~~~~~~~~~~~~E~~~- 154 (328)
+|+=..|.. . + -...|.++|++..+. .+++.+..+ .+. .......+.-+.|.+.
T Consensus 72 ~VigTTG~~------~--e-------~~~~l~~aa~~~~~~-~vv~a~N~s-iGv~ll~~l~~~aa~~~~dieIiE~HH~ 134 (245)
T 1p9l_A 72 AVVGTTGFT------A--E-------RFQQVESWLVAKPNT-SVLIAPNFA-IGAVLSMHFAKQAARFFDSAEVIELHHP 134 (245)
T ss_dssp EEECCCCCC------H--H-------HHHHHHHHHHTSTTC-EEEECSCCC-HHHHHHHHHHHHHGGGCSEEEEEEEECT
T ss_pred EEEcCCCCC------H--H-------HHHHHHHHHHhCCCC-CEEEECCcc-HHHHHHHHHHHHHHhhcCCEEEEECccc
Confidence 887655421 0 1 113455556543133 466666632 221 0000112334455433
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHH-------------------hcCccEEEEcCCcccCC
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAK-------------------EKSIDLVTINPAMVIGP 200 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-------------------~~~~~~~ilRp~~v~G~ 200 (328)
.+.+ .+-|-.+..+|.+...-.. ..++.+..+|-|.+.|.
T Consensus 135 ~K~D------aPSGTA~~lae~i~~~~~~~~~~~~~~~~~~~g~r~~~~~~i~i~s~R~g~ivg~ 193 (245)
T 1p9l_A 135 HKAD------APSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAH 193 (245)
T ss_dssp TCCS------SSCHHHHHHHHHHHHHTTTSCCCCCCCCSCCTTTTCEEETTEEEEEEECTTCCEE
T ss_pred CCCC------CCCHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCcceEEEEECCCCCeE
Confidence 2222 2345666677776432110 02577888898888885
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0043 Score=54.59 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=58.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhh-------------------hhccCCCCcEEEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLFK 66 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 66 (328)
++.++|+|.|+ |.+|++++++|+..|. ++.+++++..+...+.++ +......-+++.+.
T Consensus 116 L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 194 (353)
T 3h5n_A 116 LKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIA 194 (353)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEE
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEee
Confidence 34789999997 8899999999999995 788888876544433322 22222234577778
Q ss_pred ccCCCcCchHHhhCCccEEEEcc
Q 020266 67 ANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 67 ~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
.++++..++.+ ++++|+||.+.
T Consensus 195 ~~i~~~~~~~~-~~~~DlVvd~~ 216 (353)
T 3h5n_A 195 LNINDYTDLHK-VPEADIWVVSA 216 (353)
T ss_dssp CCCCSGGGGGG-SCCCSEEEECC
T ss_pred cccCchhhhhH-hccCCEEEEec
Confidence 88877665666 88999999875
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0014 Score=54.69 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=33.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (328)
.+.+|+|.|+| +|.+|.+++..|++.|++|++.+|++++
T Consensus 16 ~~~~~kIgiIG-~G~mG~alA~~L~~~G~~V~~~~r~~~~ 54 (245)
T 3dtt_A 16 YFQGMKIAVLG-TGTVGRTMAGALADLGHEVTIGTRDPKA 54 (245)
T ss_dssp ---CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 34578999997 7999999999999999999999998654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0024 Score=56.16 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=50.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
.+.+|||+|+ |.+|...+..+...|.+|+++++++++.+....+ +...+. .+.+.+. +++|+||+
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l--------Ga~~v~---~~~~~~~---~~~D~vid 240 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM--------GVKHFY---TDPKQCK---EELDFIIS 240 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT--------TCSEEE---SSGGGCC---SCEEEEEE
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc--------CCCeec---CCHHHHh---cCCCEEEE
Confidence 4789999997 9999999998888999999999988776654332 111121 2333332 28999999
Q ss_pred ccCC
Q 020266 88 TASP 91 (328)
Q Consensus 88 ~a~~ 91 (328)
+++.
T Consensus 241 ~~g~ 244 (348)
T 3two_A 241 TIPT 244 (348)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 9874
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0048 Score=55.61 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=50.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEE-EE---EccCCCcCchHHhhCCccE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ-LF---KANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~---~~Dl~~~~~~~~~~~~~d~ 84 (328)
+|+|.|+| +|++|..++..|++ |++|++.+|++++.+.+........ .+.++ .+ .+.++--.++.++++++|+
T Consensus 36 ~mkIaVIG-lG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~-e~~l~~ll~~~~~~l~~ttd~~ea~~~aDv 112 (432)
T 3pid_A 36 FMKITISG-TGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIV-DKEIQEYLAEKPLNFRATTDKHDAYRNADY 112 (432)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSC-CHHHHHHHHHSCCCEEEESCHHHHHTTCSE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccc-cccHHHHHhhccCCeEEEcCHHHHHhCCCE
Confidence 67899998 59999999999887 9999999998776655433110000 00000 00 0111112356677888999
Q ss_pred EEEccC
Q 020266 85 VCHTAS 90 (328)
Q Consensus 85 vih~a~ 90 (328)
||-+..
T Consensus 113 ViiaVP 118 (432)
T 3pid_A 113 VIIATP 118 (432)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 997753
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0011 Score=58.51 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=28.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~ 44 (328)
+.+|.|.||||++|..|++.|.++. .++..+..+..
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s 43 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS 43 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh
Confidence 5789999999999999999887765 56766654433
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0011 Score=58.51 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=28.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~ 44 (328)
+.+|.|.||||++|..|++.|.++. .++..+..+..
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s 43 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS 43 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh
Confidence 5789999999999999999887765 56766654433
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00072 Score=57.43 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=49.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++++++|+|+ |..|++++..|.+.|. +|.+..|+.++...+... +..+.. +++.+ + ++|+|
T Consensus 120 ~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~---------~~~~~~-----~~l~~-l-~~Div 182 (282)
T 3fbt_A 120 IKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGE---------FKVISY-----DELSN-L-KGDVI 182 (282)
T ss_dssp CTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTT---------SEEEEH-----HHHTT-C-CCSEE
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh---------cCcccH-----HHHHh-c-cCCEE
Confidence 35789999996 8899999999999997 899999987766554332 222211 22223 3 68999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
||+...
T Consensus 183 InaTp~ 188 (282)
T 3fbt_A 183 INCTPK 188 (282)
T ss_dssp EECSST
T ss_pred EECCcc
Confidence 998753
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0028 Score=55.57 Aligned_cols=94 Identities=20% Similarity=0.154 Sum_probs=60.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-----CC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DG 81 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~ 81 (328)
.+.+|||+|| |.+|...+..+...|. +|+++++++++.+....+ .. ...|..+.+ +.+.+ .+
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l---------a~-~v~~~~~~~-~~~~~~~~~~~g 231 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY---------AD-RLVNPLEED-LLEVVRRVTGSG 231 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT---------CS-EEECTTTSC-HHHHHHHHHSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh---------HH-hccCcCccC-HHHHHHHhcCCC
Confidence 5778999999 9999999998888998 999999876544332111 01 113444433 33222 26
Q ss_pred ccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+|+||++++.. . .....++.++.. +++|.++.
T Consensus 232 ~D~vid~~g~~---------~-------~~~~~~~~l~~~---G~iv~~g~ 263 (343)
T 2dq4_A 232 VEVLLEFSGNE---------A-------AIHQGLMALIPG---GEARILGI 263 (343)
T ss_dssp EEEEEECSCCH---------H-------HHHHHHHHEEEE---EEEEECCC
T ss_pred CCEEEECCCCH---------H-------HHHHHHHHHhcC---CEEEEEec
Confidence 99999998730 1 123445555443 57888876
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0011 Score=58.29 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY 34 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~ 34 (328)
+++|.|.||||++|..|++.|.+++|
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~ 27 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTL 27 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCC
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCC
Confidence 46899999999999999998888765
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.013 Score=51.38 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=52.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+|.|.| .|-||+.+++.|..-|++|++.+|++...+..... ++.. .+++.++++.+|+|+
T Consensus 162 l~gktvGIIG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~-------~~~l~ell~~aDvV~ 225 (351)
T 3jtm_A 162 LEGKTIGTVG-AGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKET--------GAKF-------VEDLNEMLPKCDVIV 225 (351)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHH--------CCEE-------CSCHHHHGGGCSEEE
T ss_pred ccCCEEeEEE-eCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhC--------CCeE-------cCCHHHHHhcCCEEE
Confidence 5689999999 69999999999999999999999986554332211 1222 246788899999999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
.+...
T Consensus 226 l~~Pl 230 (351)
T 3jtm_A 226 INMPL 230 (351)
T ss_dssp ECSCC
T ss_pred ECCCC
Confidence 87654
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0033 Score=57.53 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=33.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHC-CC-eEEEEecCCC
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSR-GY-TVKASVRDPN 44 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~ 44 (328)
+++|+|.|+| +|++|..++..|++. || +|++.+|+++
T Consensus 16 ~~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 16 GPIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CSCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 3467899998 699999999999999 99 9999999988
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0023 Score=55.56 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=51.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
.+.+|+|+||+|.+|...+..+...|.+|+++.++.+ . .+.+.+ + ... ..|..+.+.+.+.++++|+||+
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~-~-~~~~~l---G----a~~-~i~~~~~~~~~~~~~g~D~v~d 221 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRN-H-AFLKAL---G----AEQ-CINYHEEDFLLAISTPVDAVID 221 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHH-H-HHHHHH---T----CSE-EEETTTSCHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccch-H-HHHHHc---C----CCE-EEeCCCcchhhhhccCCCEEEE
Confidence 4789999999999999999999889999998875432 2 222221 1 111 2344454436666789999999
Q ss_pred ccC
Q 020266 88 TAS 90 (328)
Q Consensus 88 ~a~ 90 (328)
++|
T Consensus 222 ~~g 224 (321)
T 3tqh_A 222 LVG 224 (321)
T ss_dssp SSC
T ss_pred CCC
Confidence 987
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0011 Score=56.84 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=48.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|+|.|+| +|.+|..++..|.+.|++|.+.+|+++..+.+... ++.. ..+..++++++|+||-+.
T Consensus 6 m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------g~~~-------~~~~~~~~~~~D~vi~~v 69 (299)
T 1vpd_A 6 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA--------GAET-------ASTAKAIAEQCDVIITML 69 (299)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TCEE-------CSSHHHHHHHCSEEEECC
T ss_pred ceEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC--------CCee-------cCCHHHHHhCCCEEEEEC
Confidence 5899999 69999999999999999999999886654443221 1221 234556677799999876
Q ss_pred C
Q 020266 90 S 90 (328)
Q Consensus 90 ~ 90 (328)
.
T Consensus 70 ~ 70 (299)
T 1vpd_A 70 P 70 (299)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.007 Score=54.82 Aligned_cols=95 Identities=9% Similarity=0.141 Sum_probs=62.6
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-C---eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCc---CchHHhhCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-Y---TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE---GSFDSIVDG 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~ 81 (328)
.++|+|.| .|.||+.+++.|++++ + +|.+.+......+. .... ++++...++++. +.+.+++++
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~-~~~~-------g~~~~~~~Vdadnv~~~l~aLl~~ 83 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDV-AQQY-------GVSFKLQQITPQNYLEVIGSTLEE 83 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCH-HHHH-------TCEEEECCCCTTTHHHHTGGGCCT
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhH-Hhhc-------CCceeEEeccchhHHHHHHHHhcC
Confidence 46799999 7999999999999864 4 68888765544221 1111 345555666543 235567776
Q ss_pred ccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
.|+|||++-.. ....++++|.+. + +-|++++
T Consensus 84 ~DvVIN~s~~~-----------------~~l~Im~aclea-G---v~YlDTa 114 (480)
T 2ph5_A 84 NDFLIDVSIGI-----------------SSLALIILCNQK-G---ALYINAA 114 (480)
T ss_dssp TCEEEECCSSS-----------------CHHHHHHHHHHH-T---CEEEESS
T ss_pred CCEEEECCccc-----------------cCHHHHHHHHHc-C---CCEEECC
Confidence 79999855221 124678899887 4 4567774
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0046 Score=52.10 Aligned_cols=56 Identities=23% Similarity=0.213 Sum_probs=47.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+++|.|+++.+|+.++..|+..|.+|.+..|.. .++.+.++.+|+||
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-----------------------------~~L~~~~~~ADIVI 209 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-----------------------------TDLKSHTTKADILI 209 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-----------------------------SSHHHHHTTCSEEE
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-----------------------------hhHHHhcccCCEEE
Confidence 4689999999999999999999999999998876542 24566788899999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
...+.
T Consensus 210 ~Avg~ 214 (285)
T 3l07_A 210 VAVGK 214 (285)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98875
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0033 Score=55.50 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=60.4
Q ss_pred CCeEEEECCccHHHHHH-HHHH-HHCCCe-EEEEecCCC---ChhhhhhhhhccCCCCcEEEEEccCCCcCc--hHHhhC
Q 020266 9 GKVVCVTGASGYIASWL-VKLL-LSRGYT-VKASVRDPN---DPKKTRHLLALDGASERLQLFKANLLEEGS--FDSIVD 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l-~~~L-~~~g~~-V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~--~~~~~~ 80 (328)
..+|+|+|| |.+|... +..+ ...|.+ |++++++++ +.+....+ +...+ |..+.+. +.++-.
T Consensus 173 ~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l--------Ga~~v--~~~~~~~~~i~~~~g 241 (357)
T 2b5w_A 173 PSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL--------DATYV--DSRQTPVEDVPDVYE 241 (357)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT--------TCEEE--ETTTSCGGGHHHHSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc--------CCccc--CCCccCHHHHHHhCC
Confidence 389999999 9999999 8766 567987 999999876 44433221 23444 5544322 333312
Q ss_pred CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
++|+||++++.. . .....++.++.. +++|.++..
T Consensus 242 g~Dvvid~~g~~---------~-------~~~~~~~~l~~~---G~iv~~g~~ 275 (357)
T 2b5w_A 242 QMDFIYEATGFP---------K-------HAIQSVQALAPN---GVGALLGVP 275 (357)
T ss_dssp CEEEEEECSCCH---------H-------HHHHHHHHEEEE---EEEEECCCC
T ss_pred CCCEEEECCCCh---------H-------HHHHHHHHHhcC---CEEEEEeCC
Confidence 689999998731 1 123344555443 578888763
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0044 Score=53.93 Aligned_cols=72 Identities=26% Similarity=0.321 Sum_probs=47.5
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCc--CchHHhh-CCccEEEE
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE--GSFDSIV-DGCDGVCH 87 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~-~~~d~vih 87 (328)
+|||+||+|.+|...+..+...|.+|+++++++++.+.+..+ + ... . .|..+. +.+.++. .++|+||+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~l----G--a~~-~--i~~~~~~~~~~~~~~~~~~d~vid 222 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----G--AKE-V--LAREDVMAERIRPLDKQRWAAAVD 222 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----T--CSE-E--EECC---------CCSCCEEEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----C--CcE-E--EecCCcHHHHHHHhcCCcccEEEE
Confidence 799999999999999998888999999999987776554332 1 111 1 233322 1122222 26899999
Q ss_pred ccCC
Q 020266 88 TASP 91 (328)
Q Consensus 88 ~a~~ 91 (328)
+++.
T Consensus 223 ~~g~ 226 (328)
T 1xa0_A 223 PVGG 226 (328)
T ss_dssp CSTT
T ss_pred CCcH
Confidence 9873
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0015 Score=57.75 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=54.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccC------------------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL------------------ 69 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl------------------ 69 (328)
.+++|+|+|+ |-+|...++.|...|.+|++++|++.+.+.+... +.+++..|+
T Consensus 183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l--------Ga~~~~l~~~~~~~~gya~~~~~~~~~ 253 (381)
T 3p2y_A 183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV--------GAQWLDLGIDAAGEGGYARELSEAERA 253 (381)
T ss_dssp CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT--------TCEECCCC-------------CHHHHH
T ss_pred CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--------CCeEEeccccccccccchhhhhHHHHh
Confidence 4789999997 9999999999999999999999998765554332 223322211
Q ss_pred CCcCchHHhhCCccEEEEccCC
Q 020266 70 LEEGSFDSIVDGCDGVCHTASP 91 (328)
Q Consensus 70 ~~~~~~~~~~~~~d~vih~a~~ 91 (328)
.+.+.+.+.++++|+||.++..
T Consensus 254 ~~~~~l~e~l~~aDIVI~tv~i 275 (381)
T 3p2y_A 254 QQQQALEDAITKFDIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHTTCSEEEECCCC
T ss_pred hhHHHHHHHHhcCCEEEECCCC
Confidence 1123567788899999988644
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.008 Score=52.36 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=50.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
...+|+|.|+|. |.+|+.+++.|...|++|++.+|+..+.+.... .++.. .++.++++++|+|
T Consensus 152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------~g~~~--------~~l~e~l~~aDvV 214 (330)
T 2gcg_A 152 GLTQSTVGIIGL-GRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE--------FQAEF--------VSTPELAAQSDFI 214 (330)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHT--------TTCEE--------CCHHHHHHHCSEE
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcchhHHHh--------cCcee--------CCHHHHHhhCCEE
Confidence 356889999995 999999999999999999999998765433211 12222 1456677789999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
+-+...
T Consensus 215 i~~vp~ 220 (330)
T 2gcg_A 215 VVACSL 220 (330)
T ss_dssp EECCCC
T ss_pred EEeCCC
Confidence 977654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 328 | ||||
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 5e-49 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-29 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 2e-29 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-24 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 4e-21 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 2e-20 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 4e-19 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 6e-19 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 2e-18 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 4e-16 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 4e-16 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 5e-15 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 2e-14 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 5e-14 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 5e-14 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 6e-14 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 7e-14 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 8e-14 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 3e-13 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 1e-12 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 4e-10 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 2e-08 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 2e-08 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 3e-08 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 3e-08 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 5e-08 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 7e-08 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 1e-07 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 1e-06 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 2e-06 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 3e-06 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 5e-06 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 6e-06 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 7e-06 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 7e-06 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 9e-06 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 1e-05 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 1e-05 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 2e-05 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 3e-05 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 4e-05 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 5e-05 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 6e-05 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 9e-05 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 1e-04 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 1e-04 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 1e-04 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 2e-04 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 2e-04 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 3e-04 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 3e-04 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 3e-04 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 3e-04 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 3e-04 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 4e-04 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 4e-04 | |
| d1ulua_ | 256 | c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph | 4e-04 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 4e-04 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 5e-04 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 6e-04 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 7e-04 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 8e-04 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 0.001 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 0.001 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 0.001 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 0.002 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 0.002 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 0.002 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 0.002 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 0.002 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 0.002 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 0.003 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 0.004 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 0.004 |
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 164 bits (416), Expect = 5e-49
Identities = 83/340 (24%), Positives = 143/340 (42%), Gaps = 24/340 (7%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
+ + G +V VTGA+G++AS +V+ LL GY V+ + R + +
Sbjct: 3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGR 62
Query: 61 RLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
++L++G++D ++ G + E++ PA+ GTLN L + A
Sbjct: 63 FETAVVEDMLKQGAYDEVIKGAA--GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAA 120
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP----------LS 170
PS+KR VLTSS + L KP + +DE ++ + K L S
Sbjct: 121 TPSVKRFVLTSSTVSALI-PKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAAS 179
Query: 171 KTLAEDAAWKFAKEKSI--DLVTINPAMVIGPLLQPTLN--TSAAAVLSLIKGAQTYPNV 226
KT AE AAWKF E L + P IG + P +++ ++SL G +
Sbjct: 180 KTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239
Query: 227 TFG---WVNVKDVANAHIQAFEVPSANGRYCL-VERVSHYSEIVNIIRELYPAFQLPEKC 282
+V+ D+ H+ +P R ++ ++ R+LYP+ P
Sbjct: 240 LMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADF 299
Query: 283 ADDKPHVPTYQVLK--EKVKNLGIE-FIPVEVSLKETIES 319
D + + E +K+LG + +E S+K+ + S
Sbjct: 300 PDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGS 339
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 113 bits (283), Expect = 1e-29
Identities = 63/324 (19%), Positives = 106/324 (32%), Gaps = 26/324 (8%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKAS----VRDPNDPKKTRHLLALDGASERLQLFKA 67
+ VTG +G+I S V+ LL+ Y + V D R LA A RL+
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQV-ELLDPAVKGTLNVLNSCAKFPSIKR 126
++ + G + G D + H A+ + D + V+GT +L + R
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-VGR 121
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
VV S+ E+ +P Y SK ++ A + +
Sbjct: 122 VVHVSTNQVY-----GSIDSGSWTESSPLEPNSP------YAASKAGSDLVARAYHRTYG 170
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ----TYPNVTFGWVNVKDVANAHIQ 242
+D+ GP P V +L+ G WV+ D
Sbjct: 171 LDVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIAL 229
Query: 243 AFEVPSANGRYCL--VERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVK 300
A Y + +++ ++ L + K AD K H Y + K++
Sbjct: 230 VLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIE 289
Query: 301 N-LGIE-FIPVEVSLKETIESLKE 322
LG + L T+ +E
Sbjct: 290 RELGYRPQVSFADGLARTVRWYRE 313
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (281), Expect = 2e-29
Identities = 52/323 (16%), Positives = 110/323 (34%), Gaps = 26/323 (8%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K + +TG +G++ S L L+ G+ V K+ + E +L ++
Sbjct: 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRN---VEHWIGHENFELINHDV 58
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ + + D + H ASP +P ++ L GTLN+L + R+
Sbjct: 59 V-----EPLYIEVDQIYHLASPASPPNYMYNP-IKTLKTNTIGTLNMLGLAKRVG--ARL 110
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+L S+ + + P C Y K +AE + + K++ +
Sbjct: 111 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRAC------YDEGKRVAETMCYAYMKQEGV 164
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-----WVNVKDVANAHIQ 242
++ GP + + + + G + V D+ N +
Sbjct: 165 EVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVA 224
Query: 243 AFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKN- 301
++ E +I+ L + + ++ + + +K K
Sbjct: 225 LMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLM 284
Query: 302 LGIE-FIPVEVSLKETIESLKEK 323
LG E +P+E L + I +++
Sbjct: 285 LGWEPVVPLEEGLNKAIHYFRKE 307
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 99.1 bits (246), Expect = 3e-24
Identities = 53/335 (15%), Positives = 112/335 (33%), Gaps = 33/335 (9%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TG +G+I S +V+ ++ ++ L + S R A++ +
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISE-SNRYNFEHADICD 61
Query: 72 EGSFDSIVDG--CDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKF------ 121
I + D V H A+ + D P ++ + GT +L K+
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGP-AAFIETNIVGTYALLEVARKYWSALGE 120
Query: 122 --PSIKRVVLTSSMAAVLNTGK-PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAA 178
+ R S+ + + V + S Y SK ++
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSS--PYSASKASSDHLV 178
Query: 179 WKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ----TYPNVTFGWVNVK 234
+ + + + N + GP P +L+ ++G + W+ V+
Sbjct: 179 RAWRRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 235 DVANAHIQAFEVPSANGRYCL--------VERVSHYSEIVNIIRELYPAFQLPEKCADDK 286
D A A A Y + ++ V ++++ I +++ D+
Sbjct: 238 DHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADR 297
Query: 287 P-HVPTYQVLKEKVKN-LGIE-FIPVEVSLKETIE 318
P H Y + K+ LG + E +++T+E
Sbjct: 298 PGHDRRYAIDAGKISRELGWKPLETFESGIRKTVE 332
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 89.6 bits (221), Expect = 4e-21
Identities = 48/340 (14%), Positives = 100/340 (29%), Gaps = 56/340 (16%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+ V + G G + S + + L RG L L E NL
Sbjct: 3 QRVFIAGHRGMVGSAIRRQLEQRGDVE----------------LVLRTRDE------LNL 40
Query: 70 LEEGSFDSIV--DGCDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
L+ + + D V A+ + + + N++++ + +
Sbjct: 41 LDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VN 99
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
+++ S P+ + E+ + +E Y ++K + ++
Sbjct: 100 KLLFLGSSCIY-----PKLAKQPMAESELLQGTLEPTNE-PYAIAKIAGIKLCESYNRQY 153
Query: 186 SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY------------PNVTFGWVNV 233
D ++ P + GP + S L + + +++V
Sbjct: 154 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHV 213
Query: 234 KDVANAHIQAFEVPSANGRYCLVERVSHYS----------EIVNIIRELYPAFQLPEKCA 283
D+A A I E+ +SH + E+ I ++ A
Sbjct: 214 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA 273
Query: 284 DDKPHVPTYQVLKEKVKNLGIE-FIPVEVSLKETIESLKE 322
P + ++ LG I +E L T + E
Sbjct: 274 SKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLE 313
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 88.3 bits (218), Expect = 2e-20
Identities = 39/251 (15%), Positives = 70/251 (27%), Gaps = 26/251 (10%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLL-ALDGASERLQLFK 66
KV +TG +G S+L + LL +GY V R + + ++ H+ + + L
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61
Query: 67 ANLLEEGSFDSIVDGCD---GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF-- 121
+L + + I+ A + + D GTL +L +
Sbjct: 62 GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGL 121
Query: 122 PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKF 181
R S+ G ++ ET P Y ++K A +
Sbjct: 122 EKKTRFYQASTSELY---GLV--QEIPQKETTPFYPRSP------YAVAKLYAYWITVNY 170
Query: 182 AKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------WVNVK 234
+ + P T T + G W + K
Sbjct: 171 RESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAK 230
Query: 235 DVANAHIQAFE 245
D +
Sbjct: 231 DYVKMQWMMLQ 241
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 84.3 bits (207), Expect = 4e-19
Identities = 51/330 (15%), Positives = 92/330 (27%), Gaps = 29/330 (8%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+ VTG +G ++L KLLL +GY V V + + R L G +Q ++
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWR--LRELGIEGDIQYEDGDM 58
Query: 70 LEEGSFDSIVDGCD---GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKR 126
+ S V A F + + V G ++L + +F R
Sbjct: 59 ADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETR 118
Query: 127 VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKS 186
S+ DE Y ++K + +
Sbjct: 119 FYQASTSEM-----FGLIQAERQDENT------PFYPRSPYGVAKLYGHWITVNYRESFG 167
Query: 187 IDLVTINPAMVIGPLLQPTLNTS--AAAVLSLIKGAQTYPNVTFG-----WVNVKDVANA 239
+ + PL T AV + G Q + W D A
Sbjct: 168 LHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEA 227
Query: 240 HIQAFEVPSANGRYCLVERVSHYSEIVNIIREL----YPAFQLPEKCADDKPHVPTYQVL 295
+ A+ + ++ I E Y F + V
Sbjct: 228 MWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGN 287
Query: 296 KEKVKN-LGIEF-IPVEVSLKETIESLKEK 323
K + LG + ++ ++ +E+ +
Sbjct: 288 PAKAQRVLGWKPRTSLDELIRMMVEADLRR 317
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 84.3 bits (207), Expect = 6e-19
Identities = 49/323 (15%), Positives = 100/323 (30%), Gaps = 13/323 (4%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K + VTG +G+I S V + + V +V D + L +R++L ++
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLE-AILGDRVELVVGDI 61
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ D + D + H A+ ++D DP + GT +L + + I+
Sbjct: 62 ADAELVDKLAAKADAIVHYAAESHNDNSLNDPS-PFIHTNFIGTYTLLEAA-RKYDIRFH 119
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+++ + P E Y +K ++ + + +
Sbjct: 120 HVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGV 179
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY---PNVTFGWVNVKDVANAHIQAF 244
N + GP L W++ D +
Sbjct: 180 KATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAIL 239
Query: 245 EVPSANG-RYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKP-HVPTYQVLKEKVKN- 301
+ + E++ +I E + D+ H Y + K+++
Sbjct: 240 TKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDE 299
Query: 302 LGIE--FIPVEVSLKETIESLKE 322
LG F L+ETI+ +
Sbjct: 300 LGWTPQFTDFSEGLEETIQWYTD 322
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.3 bits (202), Expect = 2e-18
Identities = 48/318 (15%), Positives = 88/318 (27%), Gaps = 28/318 (8%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLLALDGA--SERLQLF 65
V +TG +G S+L + LL +GY V VR + + + HL A ++L
Sbjct: 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLH 61
Query: 66 KANLLEEGSFDSIVDGCDGVCH---TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF- 121
+L + I++ A + D D GTL +L++
Sbjct: 62 YGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCG 121
Query: 122 -PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWK 180
+ + S+ ++ ET P Y +K A
Sbjct: 122 LINSVKFYQASTSELYGK-----VQEIPQKETTPFYPRSP------YGAAKLYAYWIVVN 170
Query: 181 FAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------WVNV 233
F + ++ V P T + + G W +
Sbjct: 171 FREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHA 230
Query: 234 KDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQ 293
KD + + + H L+ + + ++ +
Sbjct: 231 KDYVE-AMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKE 289
Query: 294 VLKEKVKNLGIEFIPVEV 311
K V + P EV
Sbjct: 290 TGKVHVTVDLKYYRPTEV 307
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 75.9 bits (185), Expect = 4e-16
Identities = 53/350 (15%), Positives = 97/350 (27%), Gaps = 46/350 (13%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLLAL--DGASERLQLF 65
K+ +TG +G S+L + LL +GY V +R + + ++ H+ + ++L
Sbjct: 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61
Query: 66 KANLLEEGSFDSIVD--GCDGVCHTASPFYHD--AKDPQVELLDP---AVKGTLNVLNSC 118
A+L + S +D D V + A+ + + P A++ V +
Sbjct: 62 YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT 121
Query: 119 AKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAA 178
+ S +T P ET P Y SK A
Sbjct: 122 IDSGRTVKYYQAGSSEMFGSTPPP------QSETTPFHP------RSPYAASKCAAHWYT 169
Query: 179 WKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------WV 231
+ + + P T + G W
Sbjct: 170 VNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWG 229
Query: 232 NVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKP---- 287
D A + + E E +++ D +
Sbjct: 230 FAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPA 289
Query: 288 HVPTYQVLKEKVKN-LGIEF-IPVEVSLKETIES----------LKEKGF 325
V Q K K LG + + E +K ++ L + G+
Sbjct: 290 EVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGY 339
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 75.5 bits (184), Expect = 4e-16
Identities = 43/334 (12%), Positives = 103/334 (30%), Gaps = 30/334 (8%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TG G++ S L LS+G + V D K L + + ++
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLI--VFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60
Query: 72 EGSFDSIVDGC--DGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ ++ D H A +P + V GTLN+L + ++ S +
Sbjct: 61 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNP-CMDFEINVGGTLNLLEAVRQYNSNCNI 119
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL-----SKTLAEDAAWKFA 182
+ +S+ + + + + T P +S SK A+ +A
Sbjct: 120 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 179
Query: 183 KEKSIDLVTINPAMVIG-----PLLQPTLNTSAAAVLSLIKGAQTY------PNVTFGWV 231
+ ++ V + + G Q + + + G +
Sbjct: 180 RIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVL 239
Query: 232 NVKDVANAHIQAFE-VPSANGRYCLVERVSHYS----EIVNIIRELYPAFQLPEKCADDK 286
+ +D+ + + A V G + S E+ ++ + +
Sbjct: 240 HAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRE 299
Query: 287 PHVPTYQVLKEKVKN-LGIE-FIPVEVSLKETIE 318
+ +K+ N + + + +++ +
Sbjct: 300 SDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYD 333
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 72.7 bits (177), Expect = 5e-15
Identities = 52/325 (16%), Positives = 102/325 (31%), Gaps = 30/325 (9%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TGA G+IAS + + L G+ V AS D KK H+ E +L
Sbjct: 18 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTEDMFCDE---FHLVDLRV 69
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPA--VKGTLNVLNSCAKFPSIKRVVL 129
+ + +G D V + A+ + + N++ + IKR
Sbjct: 70 MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRFFY 128
Query: 130 TSSMAAVLNTGKPRTP--DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
SS + T + + W ++P+ + L K E+ + K+ I
Sbjct: 129 ASSACIYPEFKQLETTNVSLKESDAWPAEPQDA------FGLEKLATEELCKHYNKDFGI 182
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP--------NVTFGWVNVKDVANA 239
+ + GP A K + T + + +
Sbjct: 183 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEG 242
Query: 240 HIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV 299
++ + + + +E+ ++ +LP V +
Sbjct: 243 VLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFE-EKKLPIHHIPGPEGVRGRNSDNNLI 301
Query: 300 KN-LGIE-FIPVEVSLKETIESLKE 322
K LG + ++ L+ T +KE
Sbjct: 302 KEKLGWAPNMRLKEGLRITYFWIKE 326
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 70.6 bits (171), Expect = 2e-14
Identities = 37/265 (13%), Positives = 69/265 (26%), Gaps = 36/265 (13%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V + G +GYI +V +S G+ R + + L +L +A+L +
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD 65
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+ D V + + L A + +IKR + +
Sbjct: 66 HQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEA----------IKEAGNIKRFLPSE 115
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
E Q + K + + SI
Sbjct: 116 FGM------------------DPDIMEHALQPGSITFIDKR----KVRRAIEAASIPYTY 153
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT-FGWVNVKDVANAHIQAFEVPSAN 250
++ M G + K WV+ DV I++ + P
Sbjct: 154 VSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTL 213
Query: 251 GR---YCLVERVSHYSEIVNIIREL 272
+ + E++ I L
Sbjct: 214 NKTMYIRPPMNILSQKEVIQIWERL 238
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 68.7 bits (166), Expect = 5e-14
Identities = 36/245 (14%), Positives = 60/245 (24%), Gaps = 27/245 (11%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
V VTGASG + K L + K VR +K +F
Sbjct: 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI---------GGEADVFIG 54
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
++ + S + G D + S DP G + ++P
Sbjct: 55 DITDADSINPAFQGIDALVILTSAVPKMKPG-----FDPTKGGRPEFIFEDGQYPEQVDW 109
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+ + + VV + + L A ++ +
Sbjct: 110 IGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWK---RKAEQYLADSGT 166
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247
I ++ L+ V DVA IQA
Sbjct: 167 PYTIIRAGGLLDKE--------GGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFE 218
Query: 248 SANGR 252
A +
Sbjct: 219 EAKNK 223
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.7 bits (164), Expect = 5e-14
Identities = 33/245 (13%), Positives = 64/245 (26%), Gaps = 49/245 (20%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
A K + + GA+G + + GY V VRD + +
Sbjct: 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP--------RPAHVVVG 53
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
++L+ D V G D V + +G N++ + K + +V
Sbjct: 54 DVLQAADVDKTVAGQDAVIVLLGT------RNDLSPTTVMSEGARNIVAAM-KAHGVDKV 106
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
V +S DP + T K +E +
Sbjct: 107 VACTSA------------------FLLWDPT----KVPPRLQAVTDDHIRMHKVLRESGL 144
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247
V + P + L + ++ D+ + ++
Sbjct: 145 KYVAVMPPHIGDQPLTGAYTVTL------------DGRGPSRVISKHDLGHFMLRCLTTD 192
Query: 248 SANGR 252
+G
Sbjct: 193 EYDGH 197
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 69.2 bits (168), Expect = 6e-14
Identities = 58/330 (17%), Positives = 104/330 (31%), Gaps = 28/330 (8%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V VTG SGYI S LL G+ V N + ++ G + + ++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRN 61
Query: 72 EGSFDSIVD--GCDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
E I+ D V H A + P +E D V GTL ++++ ++K
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAA-NVKNF 119
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
+ +SS + K + T S K A W A +
Sbjct: 120 IFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKA-QPDWSIALLRYF 178
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-------------WVNVK 234
+ V +P+ +G Q N + + G + + FG +++V
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAI-FGNDYPTEDGTGVRDYIHVM 237
Query: 235 DVANAHI--QAFEVPSANGRYCLVERVSHYS--EIVNIIRELYPAFQLPEKCADDKPHVP 290
D+A+ H+ + S ++VN + + +P
Sbjct: 238 DLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLP 297
Query: 291 TYQVLKEKVKN-LGIE-FIPVEVSLKETIE 318
Y K L ++ ++T
Sbjct: 298 AYWADASKADRELNWRVTRTLDEMAQDTWH 327
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 69.3 bits (168), Expect = 7e-14
Identities = 33/269 (12%), Positives = 66/269 (24%), Gaps = 47/269 (17%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K + V GA+G + L+++ + G+ V+A V L A+ LF+ L
Sbjct: 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA-EELQAIPNV----TLFQGPL 58
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
L + + + + + L A AK + +
Sbjct: 59 LNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADA-----------AKRAGTIQHYI 107
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
SSM G W + + + ++ +
Sbjct: 108 YSSMPDHSLYGP------------------------WPAVPMWAPKFTVENYVRQLGLPS 143
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN----VKDVANAHIQAFE 245
+ + ++ P + DV A +Q F+
Sbjct: 144 TFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFK 203
Query: 246 VPS---ANGRYCLVERVSHYSEIVNIIRE 271
R L ++
Sbjct: 204 DGPQKWNGHRIALTFETLSPVQVCAAFSR 232
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.9 bits (167), Expect = 8e-14
Identities = 56/341 (16%), Positives = 107/341 (31%), Gaps = 30/341 (8%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K+V VTG +GYI S V L+ GY + N + L + + ++ +L
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL-TKHHIPFYEVDL 60
Query: 70 LEEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ + + D V H A VL + ++ +
Sbjct: 61 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKF 120
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPE----VCKQSELWYPLSKTLAEDAAWKFAK 183
V +SS + + + + E P K + ++ +WKFA
Sbjct: 121 VFSSSATVYGDATRFPN-MIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAI 179
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV------TFGWVNVKDVA 237
+ + + +P+ +IG N + + G + + + ++D
Sbjct: 180 LRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYI 239
Query: 238 NAHIQAFEVPSANGRYCLVERVSHYSEIVNI-------IRELYPAF------QLPEKCAD 284
+ A +A N+ + E+Y AF LP K
Sbjct: 240 HVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTG 299
Query: 285 DKP-HVPTYQVLKEKVKN-LGIE-FIPVEVSLKETIESLKE 322
+ V ++ K L + + VE S K+ + E
Sbjct: 300 RRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTE 340
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 67.3 bits (163), Expect = 3e-13
Identities = 55/332 (16%), Positives = 97/332 (29%), Gaps = 37/332 (11%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKA----SVRDPNDPKKTRHLLALDGAS--ERLQ 63
KV +TG +G+I S L++ LL V + + + R L++ S + +Q
Sbjct: 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQ 76
Query: 64 LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
NL + + + VD S DP + G LN+L +
Sbjct: 77 GDIRNLDDCNNACAGVDYVLHQAALGSVPRSI-NDPITS-NATNIDGFLNMLIAARDAKV 134
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAK 183
SS + G P E P Y ++K + E A F++
Sbjct: 135 QSFTYAASSSTYGDHPGLP------KVEDTIGKPLSP------YAVTKYVNELYADVFSR 182
Query: 184 EKSIDLVTINPAMVIGPLLQPTLNTSA---AAVLSLIKGAQTY----PNVTFGWVNVKDV 236
+ + V G P +A S+I+G Y + + +++
Sbjct: 183 CYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENT 242
Query: 237 ANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKP--------H 288
A++ A V + + + L +P
Sbjct: 243 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGD 302
Query: 289 VPTYQVLKEKVKN-LGIE-FIPVEVSLKETIE 318
V K LG V + +
Sbjct: 303 VRHSLADISKAAKLLGYAPKYDVSAGVALAMP 334
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 65.6 bits (158), Expect = 1e-12
Identities = 34/268 (12%), Positives = 71/268 (26%), Gaps = 43/268 (16%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKAN 68
+ + GA+GYI + K L G+ VR+ + L+ + + +
Sbjct: 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 63
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
+ + S V D V T +++ + K +
Sbjct: 64 IDDHASLVEAVKNVDVVISTVGSLQIESQVN---------------IIKAIKEVGTVKRF 108
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSID 188
S VD +P + + + I
Sbjct: 109 FPSEFG------------NDVDNVHAVEPAKSVFEVKAKV----------RRAIEAEGIP 146
Query: 189 LVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS 248
++ G L+ A N +V +D+ I+A + P
Sbjct: 147 YTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPR 206
Query: 249 ANGRYCLV----ERVSHYSEIVNIIREL 272
+ + +S +E+V + +
Sbjct: 207 TLNKTLYLRLPANTLS-LNELVALWEKK 233
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 57.9 bits (138), Expect = 4e-10
Identities = 34/200 (17%), Positives = 57/200 (28%), Gaps = 7/200 (3%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GK V VTG +G+ WL L + G TVK L ++ +Q +
Sbjct: 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP---TVPSLFETARVADGMQSEIGD 64
Query: 69 LLEEGS---FDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
+ ++ A P + VE V GT+ +L + +K
Sbjct: 65 IRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVK 124
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
VV + + + + DP + S +
Sbjct: 125 AVV-NITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQH 183
Query: 186 SIDLVTINPAMVIGPLLQPT 205
+ T+ VIG
Sbjct: 184 GTAVATVRAGNVIGGGDWAL 203
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 51.7 bits (122), Expect = 2e-08
Identities = 35/261 (13%), Positives = 65/261 (24%), Gaps = 53/261 (20%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K V + GA+G L+ +LS K +
Sbjct: 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE--------------------- 41
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
H + LD ++ L + K +
Sbjct: 42 -----------------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFR 84
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
L GK S +S ++Y K E A + +
Sbjct: 85 AVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLT-- 142
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA 249
P+++ GP + L AA ++ I + + + D+A A +
Sbjct: 143 -IARPSLLFGPREEFRLAEILAAPIARILPGKYHG------IEACDLARALWRLALEEGK 195
Query: 250 NGRYCLVERVSHYSEIVNIIR 270
R+ E+ + +
Sbjct: 196 GVRFV------ESDELRKLGK 210
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (122), Expect = 2e-08
Identities = 31/261 (11%), Positives = 56/261 (21%), Gaps = 44/261 (16%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K V + GASG L+K +L +G K ++ +
Sbjct: 15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDY 74
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
+ C G + +
Sbjct: 75 ASAFQGHDVGFCCLGTTRGKAGAEGFVRVD------------------------------ 104
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
VL + + S K S Y K E + K
Sbjct: 105 ---RDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEEL---KFDRY 158
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSA 249
P +++ + ++ G+ + V V V A + P
Sbjct: 159 SVFRPGVLLCDRQESRPGE---WLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD 215
Query: 250 NGRYCLVERVSHYSEIVNIIR 270
L I ++ +
Sbjct: 216 KQMELL-----ENKAIHDLGK 231
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 52.0 bits (122), Expect = 3e-08
Identities = 40/312 (12%), Positives = 86/312 (27%), Gaps = 14/312 (4%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S +VK L +G T V + D K +L+ L+ A + K + L
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADY---MDKEDFLI 58
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+ + + H + D + + + + + +
Sbjct: 59 QIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAA 118
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
+ + + + + F +
Sbjct: 119 TYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHK 178
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251
+ A V L N + + + N +V V DVA+ ++ E +
Sbjct: 179 GSMASVAFHLNTQLNNGESPKL------FEGSENFKRDFVYVGDVADVNLWFLENGVSGI 232
Query: 252 RYCLVERVSHYSEIVNIIRELYPAFQLP--EKCADDKPHVPTYQVLK-EKVKNLG--IEF 306
R + + + + Q+ K + ++ G F
Sbjct: 233 FNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPF 292
Query: 307 IPVEVSLKETIE 318
V + E +
Sbjct: 293 KTVAEGVTEYMA 304
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (123), Expect = 3e-08
Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 21/153 (13%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
++ VTGASG I + + + L+ +G V R + ++ G L ++ +
Sbjct: 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCD 69
Query: 69 LLEEGSFDSIVD-------GCDGVCHTA-----SPFYHDAKDPQVELLDPAVKGTLNVLN 116
L E S+ G D + A + ++ + V +
Sbjct: 70 LSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLAL--SIC 127
Query: 117 SCAKFPSIK-------RVVLTSSMAAVLNTGKP 142
+ + S+K ++ +SM+
Sbjct: 128 TREAYQSMKERNVDDGHIININSMSGHRVLPLS 160
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 51.5 bits (121), Expect = 5e-08
Identities = 50/366 (13%), Positives = 91/366 (24%), Gaps = 52/366 (14%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTV---------------KASVRDPNDPKKTRHLL 53
G V V G GY L + Y V P R
Sbjct: 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 54 ALDGASERLQLFKANLLEEGSFDSIVD------GCDGVCHTASPFYHDAKDPQVELLDPA 107
+ ++L+ ++ + ++P+ + V
Sbjct: 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 120
Query: 108 VKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS--DPEVCKQSEL 165
V GTLNVL + +F +V +M + KQ+
Sbjct: 121 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 180
Query: 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT--- 222
+Y LSK K I +N +V G T
Sbjct: 181 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240
Query: 223 -----------------YPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEI 265
T G+++++D A P+ G + + + + +
Sbjct: 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSV 300
Query: 266 ---VNIIRELYPAFQLPEKC----ADDKPHVPTYQVL-KEKVKNLGIEF-IPVEVSLKET 316
+++ + L K Y K+ LG+E + L
Sbjct: 301 NELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSL 360
Query: 317 IESLKE 322
+ +
Sbjct: 361 LNFAVQ 366
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 7e-08
Identities = 52/350 (14%), Positives = 108/350 (30%), Gaps = 50/350 (14%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTV-------KASVRDPNDPKKTRHLLALDGASERL 62
+ V VTG +GYI S V LL GY A + P+ R + L G +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG--RSV 60
Query: 63 QLFKANLLEEGSFDSIVDGCDGVCHT---ASPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
+ + ++L++G+ + + ++ ++ + GT+ +L
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAW 179
+ ++ SS A V + D ++P Y SK E+
Sbjct: 121 AHG--VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP---------YGKSKFFIEEMIR 169
Query: 180 KFAKEKSIDLVTI---------NPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230
+ + + + IG Q N V + G + NV
Sbjct: 170 DLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGND 229
Query: 231 VNVKDVANA--HIQAFEVPSANGRYCLVERVSHYSEIVNI-------IRELYPAF----- 276
+ +D +I ++ + + I N+ + ++ A
Sbjct: 230 YDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASG 289
Query: 277 -QLPEKCADDKP-HVPTYQVLKEKVKN-LGIE-FIPVEVSLKETIESLKE 322
++P K + V + LG + ++ ++ K+
Sbjct: 290 KKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQ 339
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (118), Expect = 1e-07
Identities = 36/241 (14%), Positives = 73/241 (30%), Gaps = 27/241 (11%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GKV VTGA+ I + LL +G V + + + L ++ + +
Sbjct: 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCD 62
Query: 69 LLEEGSFDSIVD-------GCDGVCHTASPFYHDAKDPQVEL-LDPAVKGTLNVLNSCAK 120
+ ++ D + + A + +++ L + GT L+ +K
Sbjct: 63 VADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSK 122
Query: 121 FPS--IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAA 178
++ SS+A + + P C +++ A A
Sbjct: 123 QNGGEGGIIINMSSLAGL--MPVAQQPV------------YCASKHGIVGFTRSAALAAN 168
Query: 179 WKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVAN 238
+ L I P V +L+ K +G ++ +AN
Sbjct: 169 L---MNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIAN 225
Query: 239 A 239
Sbjct: 226 G 226
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 46.6 bits (110), Expect = 1e-06
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT-RHLLALDGASERLQLFK 66
+GK V +TG+S I + G V + R+ + ++T + +L +E++
Sbjct: 3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 62
Query: 67 ANLLEEGSFDSIVD-------GCDGVCHTASPFYHD 95
A++ E D I++ D + + A D
Sbjct: 63 ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLAD 98
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 46.4 bits (108), Expect = 2e-06
Identities = 38/316 (12%), Positives = 80/316 (25%), Gaps = 45/316 (14%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TGA+G + + K L + V + D + ++
Sbjct: 4 ILITGANGQLGREIQKQLKGKNVEV----------------IPTD-------VQDLDITN 40
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131
+ + + + +N + + V
Sbjct: 41 VLAVNKFFNEKK---PNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEI 97
Query: 132 SMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVT 191
T V E E + + F K +
Sbjct: 98 VQ--------ISTDYVFDGEAKEPITEFDEVNPQSAYGKTK---LEGENFVKALNPKYYI 146
Query: 192 INPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251
+ A + G + + + + + D+A ++ + +
Sbjct: 147 VRTAWLYGD--GNNFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKNYGT 204
Query: 252 RYCL-VERVSHYSEIVNIIRELYPAFQLPEKCADDKPHV---PTYQVL-KEKVKN-LGIE 305
+C S Y V I R ++ ++ P P Y VL ++ G
Sbjct: 205 FHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDI 264
Query: 306 FIPVEVSLKETIESLK 321
+ SLKE I+ L+
Sbjct: 265 TREWKESLKEYIDLLQ 280
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 45.8 bits (108), Expect = 3e-06
Identities = 42/242 (17%), Positives = 75/242 (30%), Gaps = 18/242 (7%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE-RLQLFK 66
+ K V +TG+S I L G V + R ++TR ++ G SE ++
Sbjct: 4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 63
Query: 67 ANLLEEGSFDSIVD-------GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
A++ E D I++ D + + A DA + LN A
Sbjct: 64 ADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 123
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP-LSKTLAEDAA 178
K+V +V D ++ +++ A D A
Sbjct: 124 VIEMTKKVK---PHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLA 180
Query: 179 WKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-WVNVKDVA 237
+ I + +++P MV A+ A + G + +A
Sbjct: 181 -----KFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIA 235
Query: 238 NA 239
N
Sbjct: 236 NI 237
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (106), Expect = 5e-06
Identities = 41/256 (16%), Positives = 79/256 (30%), Gaps = 46/256 (17%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR-HLLALDGASERLQLFK 66
A KV +TG+S I L G V + R ++TR +LA + + +
Sbjct: 4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 63
Query: 67 ANLLEEGSFDSIVD-------GCDGVCHTASPFYHDAKDPQVELLDPA---------VKG 110
A++ + D I+ D + + A D++ ++
Sbjct: 64 ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 123
Query: 111 TLNVLNSCAKFPSIKR--VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168
+ + S + +V SS+A+ L+ P P +Y
Sbjct: 124 VIALTKKAVPHLSSTKGEIVNISSIASGLH-ATPDFP--------------------YYS 162
Query: 169 LSK----TLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224
++K + A + I + +I+P +V + A
Sbjct: 163 IAKAAIDQYTRNTAIDLIQHG-IRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKE 221
Query: 225 NVTFG-WVNVKDVANA 239
V G +D+A
Sbjct: 222 CVPAGVMGQPQDIAEV 237
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 44.7 bits (105), Expect = 6e-06
Identities = 38/246 (15%), Positives = 66/246 (26%), Gaps = 35/246 (14%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQ---- 63
KV +TG +G I KL + G V + + +K + + +
Sbjct: 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVT 64
Query: 64 -------LFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLN 116
L + + G D + + T + ++D V G V
Sbjct: 65 KDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV-- 122
Query: 117 SCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAED 176
P +V S + Y +K
Sbjct: 123 ----------------AKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLG 166
Query: 177 AAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNV 233
E I + ++P +V PLL ++ V L A +
Sbjct: 167 LTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKG---TLLRA 223
Query: 234 KDVANA 239
+DVA+A
Sbjct: 224 EDVADA 229
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (105), Expect = 7e-06
Identities = 40/247 (16%), Positives = 74/247 (29%), Gaps = 36/247 (14%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE---RLQL 64
G+V VTG + I +VK LL G V + R K L + R+
Sbjct: 11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 70
Query: 65 FKANLLEEGSFDSIVD------GCDGVCH------TASPFYHDAKDPQVELLDPAVKGTL 112
+ N+ E +++V G SP H + +L+ + GT
Sbjct: 71 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 130
Query: 113 NVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKT 172
+ + + ++ G P + Y L+K+
Sbjct: 131 YMCKAVYSSWMKEHGGSIVNIIVPTKAGFP----------LAVHSGAARAG--VYNLTKS 178
Query: 173 LAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232
LA + A I + + P ++ + + Q P G
Sbjct: 179 LALEWA-----CSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGS--FQKIPAKRIG--V 229
Query: 233 VKDVANA 239
++V++
Sbjct: 230 PEEVSSV 236
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (103), Expect = 7e-06
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 5/134 (3%)
Query: 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGAS----ERL 62
++GKV+ V G G + S +++ GYTV ND + L+ + + +
Sbjct: 1 SSGKVI-VYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSI 59
Query: 63 QLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP 122
A+ L+ D + G ++ K+ + + + +
Sbjct: 60 LEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLK 119
Query: 123 SIKRVVLTSSMAAV 136
+ LT + AA+
Sbjct: 120 PGGLLQLTGAAAAM 133
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 44.6 bits (103), Expect = 9e-06
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
V + G +G+I + L + LL + + +D L + ++
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--RFL----NHPHFHFVEGDISI 56
Query: 72 EGSF-DSIVDGCDGVCHTASPFYH 94
+ + V CD V +
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATP 80
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (102), Expect = 1e-05
Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 17/143 (11%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
G++V +TGA I + + + ++T G ++ F
Sbjct: 6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAA--KCKGLGAKVHTFVV 63
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTASPFY----HDAKDPQVE-LLDPAVKGTLNVL 115
+ S + + A Y +DPQ+E + V
Sbjct: 64 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTT 123
Query: 116 NSCAKFPSIK---RVVLTSSMAA 135
+ + +V +S A
Sbjct: 124 KAFLPAMTKNNHGHIVTVASAAG 146
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+VV +TG + L + G + + ++ + + A
Sbjct: 3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA 62
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTASPFYHDA 96
++ +E ++ V DG + A
Sbjct: 63 DVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQN 98
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.7 bits (100), Expect = 2e-05
Identities = 38/241 (15%), Positives = 76/241 (31%), Gaps = 37/241 (15%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+G VTGA I VK L + G V A R +D L++L ++
Sbjct: 4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD------LVSLAKECPGIEPVCV 57
Query: 68 NLLEEGSFDSIVD---GCDGVCHTA-----SPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
+L + + + + D + + A PF K+ ++ V A
Sbjct: 58 DLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVA 117
Query: 120 KFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAW 179
+ + V + + + + T + L+K +A +
Sbjct: 118 RDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGA----------MTMLTKAMAMELG- 166
Query: 180 KFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-WVNVKDVAN 238
I + ++NP +V+ + + A + + V+DV N
Sbjct: 167 ----PHKIRVNSVNPTVVLTDMGKKVSADPEFA-------RKLKERHPLRKFAEVEDVVN 215
Query: 239 A 239
+
Sbjct: 216 S 216
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 42.6 bits (98), Expect = 3e-05
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVR------DPNDPKKTRHLLA 54
+ + G +G + L + L G + V D ++PK +
Sbjct: 3 ILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVR 51
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 42.0 bits (98), Expect = 4e-05
Identities = 31/232 (13%), Positives = 64/232 (27%), Gaps = 14/232 (6%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GK +TGA I + + G +V S + + + G + +
Sbjct: 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRC 67
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
++ E ++ D ++A + D +
Sbjct: 68 DITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQ 127
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
++ M + + + L + +A D EK+I
Sbjct: 128 LVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLG-----EKNI 182
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANA 239
+ I P ++ L+ + + Q P G +D+ANA
Sbjct: 183 RVNGIAPGAILTDALKSVITPEIEQKM-----LQHTPIRRLG--QPQDIANA 227
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 41.9 bits (98), Expect = 5e-05
Identities = 32/247 (12%), Positives = 72/247 (29%), Gaps = 41/247 (16%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GKV VTG + + +VKLLL G V S + ++ L ER +
Sbjct: 5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRH 59
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTA-----SPFYHDAKDPQVELLDPAVKGTLNVL 115
++ E + ++ + + + A + LL +
Sbjct: 60 DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGC 119
Query: 116 NSCAKFPSIK--RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTL 173
++ +S+++ + + L++
Sbjct: 120 QQGIAAMKETGGSIINMASVSSW--LPIEQYAGYSASKAA------------VSALTRAA 165
Query: 174 AEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-WVN 232
A + +I + +I+P + P++Q +L + + G
Sbjct: 166 ALSCRK---QGYAIRVNSIHPDGIYTPMMQASLPKGVSKEM----VLHDPKLNRAGRAYM 218
Query: 233 VKDVANA 239
+ +A
Sbjct: 219 PERIAQL 225
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (97), Expect = 6e-05
Identities = 40/240 (16%), Positives = 73/240 (30%), Gaps = 35/240 (14%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
AG+ V VTGA I V+ L + G V A R D L +L ++
Sbjct: 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD------LDSLVRECPGIEPVCV 59
Query: 68 NLLEEGSFDSIVD---GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+L + + + + D + + A + +N A
Sbjct: 60 DLGDWEATERALGSVGPVDLLVNN----AAVALLQPFLEVTKEAFDRSFEVNLRAVIQVS 115
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK----TLAEDAAWK 180
+ P +V+ + + + Y +K L + A +
Sbjct: 116 Q--------IVARGLIARGVPGAIVNVSSQC-SQRAVTNHSVYCSTKGALDMLTKVMALE 166
Query: 181 FAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-WVNVKDVANA 239
I + +NP +V+ + Q T + A + G + V+ V NA
Sbjct: 167 LGP-HKIRVNAVNPTVVMTSMGQATWSDPHKA-------KTMLNRIPLGKFAEVEHVVNA 218
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (96), Expect = 9e-05
Identities = 44/242 (18%), Positives = 79/242 (32%), Gaps = 32/242 (13%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR------HLLALDGASER 61
AGKVV VTG I + +V+ ++ G V +D + + + D E
Sbjct: 5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQED 64
Query: 62 --LQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCA 119
L + G D +V+ P A+ + +LL+ + GT +
Sbjct: 65 DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFR-QLLELNLLGTYTLTKLAL 123
Query: 120 KFPSIK--RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDA 177
+ V+ SS+ + P V + + ++K LA D
Sbjct: 124 PYLRKSQGNVINISSLVG-------------AIGQAQAVPYVATKGAVTA-MTKALALDE 169
Query: 178 AWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVA 237
+ + + I+P + PL + S+ +G P G +V
Sbjct: 170 S-----PYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMG--QPAEVG 222
Query: 238 NA 239
A
Sbjct: 223 AA 224
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.6 bits (94), Expect = 1e-04
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 4/132 (3%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGAS----ERLQL 64
+ V V G G + S V+ +R + V + N+ ++ + + +++
Sbjct: 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTA 61
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
LL + D+I+ G + K+ + T++ +
Sbjct: 62 EVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG 121
Query: 125 KRVVLTSSMAAV 136
+ L + AA+
Sbjct: 122 GLLTLAGAKAAL 133
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
G VTG S I +V+ L G V R+ + + + G + +
Sbjct: 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNV--EGSVC 62
Query: 68 NLLEEGSFDSIVD 80
+LL D ++
Sbjct: 63 DLLSRTERDKLMQ 75
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 40.2 bits (93), Expect = 1e-04
Identities = 37/241 (15%), Positives = 67/241 (27%), Gaps = 22/241 (9%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVK--ASVRDPNDPKKTR-------HLLALD-- 56
+ V VTGA+ I LV+ L+ A+ RD + + H+L L
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVT 61
Query: 57 --GASERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNV 114
+ + ++ ++ GV + + E LD + +
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLS-LLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLL 120
Query: 115 LNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLA 174
+ +V + T + L Y +SK
Sbjct: 121 TQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPV-LAYRMSKAAI 179
Query: 175 EDAAWKFAKE---KSIDLVTINPAMVIGPLLQP----TLNTSAAAVLSLIKGAQTYPNVT 227
A + ++ +V P V L T+ S A ++S N
Sbjct: 180 NMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALTVEQSTAELISSFNKLDNSHNGR 239
Query: 228 F 228
F
Sbjct: 240 F 240
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 40.0 bits (93), Expect = 2e-04
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GKV +TG + I + + G V + R + +K + G +++Q F+
Sbjct: 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV---GTPDQIQFFQH 61
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTASPFYH 94
+ +E + + D + + A +
Sbjct: 62 DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVN 95
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 40.0 bits (93), Expect = 2e-04
Identities = 37/249 (14%), Positives = 74/249 (29%), Gaps = 38/249 (15%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR-------HLLALDGASE 60
G+ V +TG + + LV ++ G V + + + D S
Sbjct: 4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSL 63
Query: 61 --RLQLFKANLLEEGSFDSIVDGCDGVCHTASPF----YHDAKDPQVELLDPAVKGTLNV 114
+ Q + G D+++ G+ ++ E+ VKG ++
Sbjct: 64 EDQKQAASRCVARFGKIDTLIP-NAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHA 122
Query: 115 LNSCAKF--PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKT 172
+ +C S V+ T S A P + L +
Sbjct: 123 VKACLPALVASRGNVIFTISNAGF--YPNGGGPLYTAAKHAIV------------GLVRE 168
Query: 173 LAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT-FG-W 230
LA + A + + + + L P+ + +S + A +V G
Sbjct: 169 LAFELAPY------VRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRM 222
Query: 231 VNVKDVANA 239
V++ A
Sbjct: 223 PEVEEYTGA 231
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 39.6 bits (92), Expect = 3e-04
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
G VTG S I +V+ L S G +V R+ + G +++
Sbjct: 7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF--KVEASVC 64
Query: 68 NLLEEGSFDSIVD 80
+L +++
Sbjct: 65 DLSSRSERQELMN 77
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 39.2 bits (91), Expect = 3e-04
Identities = 33/222 (14%), Positives = 66/222 (29%), Gaps = 33/222 (14%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR-------HLLALDGASE 60
+GK V +TG + + + + ++ G V + + T LD E
Sbjct: 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIE 63
Query: 61 --RLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSC 118
++ E GS D +V+ T ++ + ++++ + G + +
Sbjct: 64 EDWQRVVAYAREEFGSVDGLVNNAG--ISTGMFLETESVERFRKVVEINLTGVFIGMKTV 121
Query: 119 AKFPSIK---RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAE 175
+V SS A ++ S K LSK A
Sbjct: 122 IPAMKDAGGGSIVNISSAAGLMGL------------ALTSSYGASKWGVRG--LSKLAAV 167
Query: 176 DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLI 217
+ I + +++P M P+ T
Sbjct: 168 ELG-----TDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNT 204
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 39.2 bits (91), Expect = 3e-04
Identities = 17/139 (12%), Positives = 32/139 (23%), Gaps = 12/139 (8%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K V A G I + L+ R + +P L A +
Sbjct: 4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA-INPKVNITFHTY 62
Query: 68 NLLEEGS-----FDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP 122
++ + I D V + + G +N + F
Sbjct: 63 DVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFW 122
Query: 123 SIK------RVVLTSSMAA 135
+ + S+
Sbjct: 123 DKRKGGPGGIIANICSVTG 141
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 57/367 (15%), Positives = 106/367 (28%), Gaps = 63/367 (17%)
Query: 12 VCVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQ---LFKA 67
V V G +GYI S V+ LL ++V K+ H+ + + +LQ K
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ + + D + H D V + G ++ +
Sbjct: 65 PWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGI 124
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW-----------YPLSKTLAED 176
+ + K + V +E Y SK +AE
Sbjct: 125 LRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAER 184
Query: 177 AAWKFAKEKSIDLVTINPAMVIGP--------------------LLQPTLNTSAAAVLSL 216
A+ I + + G L + + + L++
Sbjct: 185 MIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTI 244
Query: 217 IKGAQTYPNVT-FG-------------WVNVKDVANAHIQAFEVPSANGRYCLVERVSHY 262
+ A T + FG +V+V D+A+AHI A + G + S +
Sbjct: 245 HEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVF 304
Query: 263 ----------SEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKN-LGIEFIPVEV 311
E++ + R+ +C + +K + LG + P +
Sbjct: 305 NLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLG--WKP-KY 361
Query: 312 SLKETIE 318
E I
Sbjct: 362 DTLEAIM 368
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.4 bits (91), Expect = 3e-04
Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 27/247 (10%)
Query: 8 AGKVVCVTGASGYIASWLVKLL---LSRGYTVKASVRDPNDPKKTRHLLALDGASERLQL 64
V +TGAS L L LS G + S R + ++ + L ++ L
Sbjct: 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64
Query: 65 FKANLLEEGSFDSIVDGC-----------DGVCHTASPFYHDAKDPQVELLDPAVKGTLN 113
A+L E ++ + + A+ +K V
Sbjct: 65 AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWA 124
Query: 114 VLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP-LSKT 172
+ + + L + + + + + + + L +
Sbjct: 125 LNLTS--MLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQV 182
Query: 173 LAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVN 232
LA + E S+ +++ P + + Q TS L K + + +
Sbjct: 183 LAAE-------EPSVRVLSYAPGPLDNDMQQLARETSKDPEL-RSKLQKLKSDGALV--D 232
Query: 233 VKDVANA 239
A
Sbjct: 233 CGTSAQK 239
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 38.8 bits (90), Expect = 4e-04
Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 17/143 (11%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
KV VTGA I + K+L V R + G + +
Sbjct: 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGD 67
Query: 69 LLEEGSFDSIVDG--------CDGVCHTASPFYHDAKDPQVELLDPAVKGTLN--VLNSC 118
+ ++ +++ V + + + + + ++ LN +
Sbjct: 68 VSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQ 127
Query: 119 AKFPSIK-----RVVLTSSMAAV 136
+ R++ SS+ +
Sbjct: 128 PISKRMINNRYGRIINISSIVGL 150
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.9 bits (90), Expect = 4e-04
Identities = 31/203 (15%), Positives = 66/203 (32%), Gaps = 23/203 (11%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GKV V+G + + + V+ +++ G V + K LA + +
Sbjct: 5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHL 59
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
++ + + + VD G + + A +E + +N
Sbjct: 60 DVTQPAQWKAAVDTAVTAFGGLHVLVNNA----GILNIGTIEDYALTEWQRILDVNLTGV 115
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWK 180
F I+ VV A + + + + K + L+K+ A +
Sbjct: 116 FLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRG--LTKSTALELG-- 171
Query: 181 FAKEKSIDLVTINPAMVIGPLLQ 203
I + +I+P +V P+
Sbjct: 172 ---PSGIRVNSIHPGLVKTPMTD 191
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Score = 39.1 bits (90), Expect = 4e-04
Identities = 25/144 (17%), Positives = 39/144 (27%), Gaps = 16/144 (11%)
Query: 8 AGKVVCVTGASGY--IASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-------- 57
+GK V G + + + L G V S + + L G
Sbjct: 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRAD 66
Query: 58 ---ASERLQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNV 114
E LF G D +V A + Q LL V V
Sbjct: 67 VTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLV 126
Query: 115 LNSCAKFPSIKR---VVLTSSMAA 135
+ P ++ +V + A+
Sbjct: 127 AVARRAEPLLREGGGIVTLTYYAS 150
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 38.9 bits (90), Expect = 4e-04
Identities = 11/94 (11%), Positives = 27/94 (28%), Gaps = 8/94 (8%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K + VTG + I + + + G V R D + + + + + ++
Sbjct: 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQC 66
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTASPFYH 94
++ + G+ A
Sbjct: 67 DVSNTDIVTKTIQQIDADLGPISGLIANAGVSVV 100
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 38.6 bits (89), Expect = 5e-04
Identities = 31/241 (12%), Positives = 64/241 (26%), Gaps = 23/241 (9%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
GK +TG++ I + + G V + + + T
Sbjct: 4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARAT-----AAEIGPAACAIAL 58
Query: 68 NLLEEGSFDSIVD------GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF 121
++ ++ S D V G + + + A ++ +NV +
Sbjct: 59 DVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMM 118
Query: 122 PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKF 181
++ R + +A C L+++ +
Sbjct: 119 QAVAR----AMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLI--- 171
Query: 182 AKEKSIDLVTINPAMVIGPLLQPTLNTSAAA--VLSLIKGAQTYPNVTFG-WVNVKDVAN 238
I++ I P +V G A + K Q V FG +D+
Sbjct: 172 --RHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTG 229
Query: 239 A 239
Sbjct: 230 M 230
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 38.3 bits (89), Expect = 6e-04
Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 40/245 (16%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL----LALDGASER-- 61
AGK V VTG + I + + G V P + + +D ER
Sbjct: 4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERER 63
Query: 62 LQLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF 121
++ + G D +V+ + S + + +L+ + +++ A+
Sbjct: 64 VRFVEEAAYALGRVDVLVN-NAAIAAPGSALTVRLPEWR-RVLEVNLTAPMHLSALAARE 121
Query: 122 PSIKR---VVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSK----TLA 174
+V +S+ + Y SK L
Sbjct: 122 MRKVGGGAIVNVASVQG--LFAEQENA--------------------AYNASKGGLVNLT 159
Query: 175 EDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVK 234
A A I + + P + + + S + + G +
Sbjct: 160 RSLALDLAP-LRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLG--KPE 216
Query: 235 DVANA 239
+VA A
Sbjct: 217 EVAEA 221
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 38.2 bits (88), Expect = 7e-04
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG 57
GK+ VTGAS I + + L +RG V + N + L +G
Sbjct: 3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANG 52
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 38.2 bits (88), Expect = 8e-04
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 13/147 (8%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
AGKV TGA I + L RG +V + + + L + +A
Sbjct: 5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS-SSKAAEEVVAELKKLGAQGVAIQA 63
Query: 68 NLLEEGSFDSIVD-------GCDGVCH-----TASPFYHDAKDPQVELLDPAVKGTLNVL 115
++ + ++ D G D V ++ ++ + +G V
Sbjct: 64 DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVA 123
Query: 116 NSCAKFPSIKRVVLTSSMAAVLNTGKP 142
K ++ +S A + TG P
Sbjct: 124 QQGLKHCRRGGRIILTSSIAAVMTGIP 150
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.0 bits (88), Expect = 0.001
Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 27/152 (17%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERL----- 62
G+VV VTGA G + RG V + + + A D E +
Sbjct: 6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG 65
Query: 63 -------------QLFKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVK 109
+L K L G D +V G+ S +D + ++
Sbjct: 66 KAVANYDSVEAGEKLVKTALDTFGRID-VVVNNAGILRDRSFSRISDEDWD-IIQRVHLR 123
Query: 110 GTLNVLNSCAKFPSIK-----RVVLTSSMAAV 136
G+ V + A + +K R+++T+S + +
Sbjct: 124 GSFQV--TRAAWDHMKKQNYGRIIMTASASGI 153
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 37.4 bits (86), Expect = 0.001
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFK 66
GKV VTGA I + L RG V + + + ++ + +G+ K
Sbjct: 17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVK 74
Query: 67 ANLLEEGSFDSIVD 80
AN+ + +
Sbjct: 75 ANVGVVEDIVRMFE 88
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 37.3 bits (86), Expect = 0.001
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K V VTG + I +V+ G + R+ + + G ++
Sbjct: 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVC 64
Query: 68 NLLEEGSFDSIVD 80
+ + ++
Sbjct: 65 DASLRPEREKLMQ 77
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 37.4 bits (86), Expect = 0.002
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
+V VTGA+ I + + L G V R + T L G +
Sbjct: 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCD 59
Query: 69 LLEEGSFDSIVD 80
+ +++V
Sbjct: 60 VRSVPEIEALVA 71
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 37.1 bits (85), Expect = 0.002
Identities = 13/52 (25%), Positives = 17/52 (32%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGAS 59
GKV VTGA G I L G + + +K + G
Sbjct: 4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVE 55
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 37.0 bits (85), Expect = 0.002
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+GK + VTGA+ I + L G ++ A R+ + A+ A
Sbjct: 4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAE-----AVAALEAEAIAVVA 58
Query: 68 NLLEEGSFDSIVD-------GCDGVCHTA 89
++ + + +++ GV H A
Sbjct: 59 DVSDPKAVEAVFAEALEEFGRLHGVAHFA 87
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 36.8 bits (85), Expect = 0.002
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
K+ +TG + I + + G + + P + A+ R+ K
Sbjct: 4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA----AIRNLGRRVLTVKC 59
Query: 68 NLLEEGSFDSIVD 80
++ + G ++
Sbjct: 60 DVSQPGDVEAFGK 72
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.6 bits (84), Expect = 0.002
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48
+ V VTG + I + + L + G+ V + R PK
Sbjct: 6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG 46
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.002
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKT 49
GK V VTGAS I + L G V + R +K
Sbjct: 13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV 54
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 36.3 bits (83), Expect = 0.003
Identities = 30/210 (14%), Positives = 64/210 (30%), Gaps = 16/210 (7%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
GKV VTG++ I + L ++G + + + ++ A+
Sbjct: 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGAD 63
Query: 69 LLEEGSFDSIVD------GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP 122
L + + +VD G + + H A LN+
Sbjct: 64 LSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTA 123
Query: 123 SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFA 182
+ + ++N +++ + K + + +K A + A
Sbjct: 124 AALPHMKKQGFGRIINIASAHGLVASANKSAYVA---AKHGVVGF--TKVTALETA---- 174
Query: 183 KEKSIDLVTINPAMVIGPLLQPTLNTSAAA 212
+ I I P V PL++ ++ A
Sbjct: 175 -GQGITANAICPGWVRTPLVEKQISALAEK 203
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 36.2 bits (83), Expect = 0.004
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
G+V VTG S + + + L G +V + R+ + + L + F+
Sbjct: 4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT-EKYGVETMAFRC 62
Query: 68 NLLEEGSFDSIVD 80
++ +++
Sbjct: 63 DVSNYEEVKKLLE 75
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 35.8 bits (82), Expect = 0.004
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRH-LLALDGASERLQLFKA 67
K V V AS I + +L G V R+ K++ H + D + LF+
Sbjct: 4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEK 63
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 328 | |||
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.97 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.97 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.95 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.95 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.93 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.93 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.93 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.92 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.92 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.92 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.92 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.92 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.92 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.92 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.92 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.92 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.92 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.92 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.92 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.92 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.91 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.91 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.91 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.91 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.91 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.91 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.91 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.91 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.91 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.91 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.91 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.91 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.91 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.9 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.9 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.9 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.9 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.9 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.9 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.9 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.9 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.89 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.89 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.89 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.89 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.89 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.89 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.89 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.88 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.88 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.87 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.87 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.87 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.87 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.86 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.86 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.86 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.85 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.84 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.83 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.82 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.82 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.81 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.8 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.79 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.79 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.76 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.75 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.72 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.71 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.7 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.68 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.6 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.43 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.61 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.6 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.56 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.48 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.47 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.41 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.3 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.28 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.24 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 98.22 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.22 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.2 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.18 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.15 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 98.13 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.13 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.11 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.05 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.04 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.99 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.96 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.92 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.87 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.87 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.87 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.81 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.8 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.74 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.73 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.72 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.7 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.69 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.68 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.61 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.6 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.6 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.57 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.54 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.52 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.5 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 97.49 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.44 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.44 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 97.43 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.41 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.41 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.4 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.4 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.38 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.37 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.32 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.29 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.23 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.22 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.21 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.19 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.15 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.01 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.0 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.96 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.95 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.93 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.92 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.92 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.78 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.73 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.71 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.71 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.66 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.63 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.61 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.59 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 96.53 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 96.52 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.47 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.43 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.43 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.39 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.33 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.32 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.29 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.24 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.23 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.22 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.16 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.14 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.12 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.12 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 96.1 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.08 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.06 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.02 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.94 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 95.91 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.91 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.91 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.89 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.88 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.88 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 95.85 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.84 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.84 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.84 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 95.8 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.78 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.76 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.74 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.71 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.69 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.69 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.67 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.65 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.65 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.64 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.64 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.6 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.58 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.52 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.51 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 95.31 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 95.29 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 95.24 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.19 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 95.15 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.14 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 95.08 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 95.07 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.03 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.93 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.92 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.86 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.7 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.7 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.66 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 94.61 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 94.6 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.54 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.47 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.45 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 94.38 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 94.38 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.31 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.26 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 94.04 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.92 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 93.78 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 93.44 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.37 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.33 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.18 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.14 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.81 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 92.81 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 92.74 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.65 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 92.64 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 92.6 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 92.37 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 92.35 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 92.2 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 91.96 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 91.92 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 91.86 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 91.52 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 91.32 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 91.32 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.17 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 91.08 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.83 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 90.65 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.63 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 90.55 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 90.27 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 90.05 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 89.95 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 89.91 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 89.86 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 89.83 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 89.77 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 89.7 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 89.62 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 89.15 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 89.09 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 88.76 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 88.45 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 88.44 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 87.69 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 87.58 | |
| d1qkia1 | 203 | Glucose 6-phosphate dehydrogenase, N-terminal doma | 87.38 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 87.15 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 86.63 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 86.62 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 86.55 | |
| d1h9aa1 | 195 | Glucose 6-phosphate dehydrogenase, N-terminal doma | 86.54 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 86.47 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 86.32 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 86.14 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 85.81 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 85.67 | |
| d1p3y1_ | 183 | MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} | 85.53 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 84.7 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 84.63 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 84.44 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 84.37 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 84.25 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 84.21 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 84.17 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 84.1 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 84.07 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 83.69 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 83.66 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 83.4 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 83.39 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 83.34 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 83.28 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 83.01 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 82.79 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 82.57 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 82.5 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 82.34 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.29 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 82.22 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 82.03 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 81.78 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 81.72 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 81.66 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 80.68 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 80.35 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 80.25 |
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=1.4e-47 Score=337.45 Aligned_cols=300 Identities=21% Similarity=0.234 Sum_probs=237.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeE------EEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTV------KASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
|||||||||||||++|+++|+++|++| +++++....... . .........+++++.+|+++..........+|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d 78 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-A-NLAPVDADPRLRFVHGDIRDAGLLARELRGVD 78 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-G-GGGGGTTCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH-h-HhhhhhcCCCeEEEEeccccchhhhccccccc
Confidence 579999999999999999999999755 444432211111 0 11111234689999999999999998888999
Q ss_pred EEEEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020266 84 GVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (328)
Q Consensus 84 ~vih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 162 (328)
.|+|+|+.... .........+++|+.|+.+++++|++. ++++|||+||++ +||. ....+++|+++..|.
T Consensus 79 ~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~I~~Ss~~-~yg~----~~~~~~~E~~~~~p~---- 148 (322)
T d1r6da_ 79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQ-VYGS----IDSGSWTESSPLEPN---- 148 (322)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGG-GGCC----CSSSCBCTTSCCCCC----
T ss_pred eEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHc-CCceEEEeecce-eecC----CCCCCCCCCCCCCCC----
Confidence 99999976322 222233477889999999999999998 789999999975 5543 245678999888764
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CCCCccceeHHHHHH
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVAN 238 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~ 238 (328)
+.|+.+|..+|.+++.++++++++++++||++||||++... ..+..++.++..+++ ++ |++.++|+|++|+|+
T Consensus 149 --~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~-~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ 225 (322)
T d1r6da_ 149 --SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCR 225 (322)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcC-cHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHH
Confidence 67999999999999999999999999999999999986543 456777888888885 23 578899999999999
Q ss_pred HHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCC-CCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHHHH
Q 020266 239 AHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQL-PEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLK 314 (328)
Q Consensus 239 ~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~ 314 (328)
++..+++++..+++||+++ +.+++.|+++.+.+.++.... .............+.+|++|+ +.|||+ .++++|+++
T Consensus 226 ai~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~eegI~ 305 (322)
T d1r6da_ 226 GIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLA 305 (322)
T ss_dssp HHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHH
T ss_pred HHHHHHhCCCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCCCHHHHHH
Confidence 9999999887777999975 899999999999999884311 112223334445677999999 889999 789999999
Q ss_pred HHHHHHHHcC
Q 020266 315 ETIESLKEKG 324 (328)
Q Consensus 315 ~~~~~~~~~~ 324 (328)
++++|++++.
T Consensus 306 ~~i~w~~~n~ 315 (322)
T d1r6da_ 306 RTVRWYRENR 315 (322)
T ss_dssp HHHHHHHHCH
T ss_pred HHHHHHHHhH
Confidence 9999999854
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-46 Score=329.21 Aligned_cols=296 Identities=19% Similarity=0.252 Sum_probs=223.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
|||||||||||||++|+++|+++|++|++++|... ....+... ....++.+...|+.+. ++.++|+|||+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~-----~~~~~d~Vihl 72 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW----IGHENFELINHDVVEP-----LYIEVDQIYHL 72 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG----TTCTTEEEEECCTTSC-----CCCCCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHh----cCCCceEEEehHHHHH-----HHcCCCEEEEC
Confidence 78999999999999999999999999999987433 22222211 1234566666666543 45679999999
Q ss_pred cCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 89 ASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 89 a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
|+.... .......+.+++|+.|+.+|+++|++. ++ ++||+||++ +|+.+ ...+++|+..... .+..+.+.|
T Consensus 73 Aa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~-~~-k~I~~SS~~-vy~~~----~~~~~~e~~~~~~-~~~~p~~~Y 144 (312)
T d2b69a1 73 ASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSE-VYGDP----EVHPQSEDYWGHV-NPIGPRACY 144 (312)
T ss_dssp CSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGG-GGBSC----SSSSBCTTCCCBC-CSSSTTHHH
T ss_pred cccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEChh-eecCC----CCCCCCccccCCC-CCCCCccHH
Confidence 997542 122333478899999999999999997 65 799999975 55432 2234455432211 111234779
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC-cchHHHHHHHHhCCC--CC--CCCCccceeHHHHHHHHHH
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL-NTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~~~~~ 242 (328)
+.||.++|.+++.+++.++++++++||++||||++.... ..+..++.++..|++ ++ |.+.++|+|++|+++++..
T Consensus 145 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~ 224 (312)
T d2b69a1 145 DEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVA 224 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHH
Confidence 999999999999999999999999999999999876543 346678888888885 22 5688999999999999999
Q ss_pred hhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHHHHHHHHH
Q 020266 243 AFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKETIES 319 (328)
Q Consensus 243 ~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~ 319 (328)
+++.. ..+.||+++ +..++.++++.+++.++.................+..|++|+ +.|||+ .++++++|+++++|
T Consensus 225 ~~~~~-~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w 303 (312)
T d2b69a1 225 LMNSN-VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHY 303 (312)
T ss_dssp HHTSS-CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHH
T ss_pred HHhhc-cCCceEecCCcccchhhHHHHHHHHhCCCCceEECCCCCCCCCeeeECHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 98765 567899875 899999999999999874322222222233345677899999 889999 88999999999999
Q ss_pred HHHc
Q 020266 320 LKEK 323 (328)
Q Consensus 320 ~~~~ 323 (328)
|+++
T Consensus 304 ~~~~ 307 (312)
T d2b69a1 304 FRKE 307 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9765
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.7e-46 Score=329.99 Aligned_cols=299 Identities=16% Similarity=0.150 Sum_probs=223.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC--hhhhhhhhh-ccCCCCcEEEEEccCCCcCchHHhhC--CccE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 84 (328)
|+|||||||||||++|+++|+++|++|++++|.... ...+..... ......+++++++|++|.+++.++++ ++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 789999999999999999999999999999995432 222222221 11234689999999999999999998 4699
Q ss_pred EEEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 85 VCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 85 vih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
|||+|+.... .........+++|+.||.+|+++|++.. +.++|||+||.+ +||.+ ...+++|+++..|.
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~-vYG~~----~~~~~~E~~~~~P~--- 153 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSE-LYGLV----QEIPQKETTPFYPR--- 153 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGG-GGTTC----CSSSBCTTSCCCCC---
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchh-hhCCC----CCCCcCCCCCCCCC---
Confidence 9999997432 2233344788999999999999999862 335799999965 66532 45678999887764
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCCC-C----CCCCCccceeHH
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQ-T----YPNVTFGWVNVK 234 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~-~----~~~~~~~~v~v~ 234 (328)
++|+.||+++|.+++.+++.++++++++||+++|||...... ..+...+.+...+++ . -+++.++|+|++
T Consensus 154 ---~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~ 230 (357)
T d1db3a_ 154 ---SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAK 230 (357)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeec
Confidence 679999999999999999999999999999999999754332 234556666666663 1 157889999999
Q ss_pred HHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC----CCC------------CCCC-------------
Q 020266 235 DVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ----LPE------------KCAD------------- 284 (328)
Q Consensus 235 D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~----~~~------------~~~~------------- 284 (328)
|+|+++..++++. .++.||+++ +.+|++|+++.+.+.++... .+. ..+.
T Consensus 231 D~~~a~~~~~~~~-~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (357)
T d1db3a_ 231 DYVKMQWMMLQQE-QPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPR 309 (357)
T ss_dssp HHHHHHHHTTSSS-SCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGG
T ss_pred hHHHHHHHHHhCC-CCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEeeccc
Confidence 9999999999875 457999875 88999999999999986210 000 0000
Q ss_pred --CCCCCCceecchHHH-HhcCCc-cccHHHHHHHHHHHH
Q 020266 285 --DKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKETIESL 320 (328)
Q Consensus 285 --~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~ 320 (328)
.+.....+.+|++|+ ++|||+ .++++|++++++++.
T Consensus 310 ~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~ 349 (357)
T d1db3a_ 310 YFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVAND 349 (357)
T ss_dssp GCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHH
T ss_pred cCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 011123446799999 889999 789999999998754
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=4.4e-46 Score=332.57 Aligned_cols=303 Identities=19% Similarity=0.227 Sum_probs=227.6
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEE-EecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 86 (328)
|||||||||||||++|+++|+++|++|++ +++.... ..... +.......+++++.+|++|++.+..+++ ++|+||
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~-~~~~~-~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYA-GNLES-LSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM 78 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTT-CCGGG-GTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc-ccHHH-HHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence 57999999999999999999999998554 4442222 11111 1122334689999999999999998887 589999
Q ss_pred EccCCCCCC--CCCcchhhhhHHHHHHHHHHHHHhcCC--------CccEEEEecchhhhccCCCCCC------CCcccc
Q 020266 87 HTASPFYHD--AKDPQVELLDPAVKGTLNVLNSCAKFP--------SIKRVVLTSSMAAVLNTGKPRT------PDVVVD 150 (328)
Q Consensus 87 h~a~~~~~~--~~~~~~~~~~~N~~~~~~l~~~~~~~~--------~~~~~v~~SS~~~~~~~~~~~~------~~~~~~ 150 (328)
|+||..... ..++ ..++++|+.|+.+++++|++.+ ++++|||+||.+ +||...... ......
T Consensus 79 hlAa~~~~~~~~~~p-~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~~~~~ 156 (361)
T d1kewa_ 79 HLAAESHVDRSITGP-AAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE-VYGDLPHPDEVENSVTLPLFT 156 (361)
T ss_dssp ECCSCCCHHHHHHCT-HHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG-GGCCCCCGGGSCTTSCCCCBC
T ss_pred ECccccchhhHHhCH-HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccce-eeCCCccCCccccccCCCCcc
Confidence 999974321 1233 4789999999999999998751 345899999975 554321100 011122
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC--C--CCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT--Y--PNV 226 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~--~--~~~ 226 (328)
|+++..| .+.|+.+|.++|.++..++++++++++++||++||||++.. ...+..++.++..|+++ + |++
T Consensus 157 e~~~~~p------~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~-~~~i~~~i~~~~~g~~~~v~g~g~~ 229 (361)
T d1kewa_ 157 ETTAYAP------SSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP-EKLIPLVILNALEGKPLPIYGKGDQ 229 (361)
T ss_dssp TTSCCCC------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT-TSHHHHHHHHHHHTCCEEEETTSCC
T ss_pred cCCCCCC------CCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCc-CcHHHHHHHHHHcCCCcEEeCCCCe
Confidence 4444443 47799999999999999999999999999999999998654 24567788889998853 2 578
Q ss_pred CccceeHHHHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCC---CCC--C---CCCCCCCCCCceecchH
Q 020266 227 TFGWVNVKDVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAF---QLP--E---KCADDKPHVPTYQVLKE 297 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~---~~~--~---~~~~~~~~~~~~~~~~~ 297 (328)
.|+|+|++|+|+++..++++...++.||+++ ...++.|+++.+.+.++.. ... . .....+.....+.+|++
T Consensus 230 ~r~~i~v~D~a~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 309 (361)
T d1kewa_ 230 IRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAG 309 (361)
T ss_dssp EEEEEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCH
T ss_pred EEeCEEHHHHHHHHHHHHhcCCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCHH
Confidence 8999999999999999999876677999975 7899999999998876311 000 0 11122234456788999
Q ss_pred HH-HhcCCc-cccHHHHHHHHHHHHHHc
Q 020266 298 KV-KNLGIE-FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 298 k~-~~lg~~-~~~~~~~l~~~~~~~~~~ 323 (328)
|+ +.|||+ .++++++|+++++||+++
T Consensus 310 k~~~~lgw~P~~~l~e~i~~ti~w~~~n 337 (361)
T d1kewa_ 310 KISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp HHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHh
Confidence 99 889999 899999999999999876
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=3.9e-45 Score=324.29 Aligned_cols=306 Identities=16% Similarity=0.133 Sum_probs=239.4
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-Chhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
.+++|+|||||||||||++|+++|+++||+|++++|... ............ .....++++.+|+.|..........+
T Consensus 13 ~~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~ 92 (341)
T d1sb8a_ 13 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 92 (341)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence 445789999999999999999999999999999998433 222222221111 12357999999999999888888899
Q ss_pred cEEEEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020266 83 DGVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCK 161 (328)
Q Consensus 83 d~vih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 161 (328)
+.|+|+++.... .........+++|+.|+.+|+++|.+. ++++|||+||.+ +||. ....+++|+++..|.
T Consensus 93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~i~~SS~~-vyg~----~~~~~~~E~~~~~p~--- 163 (341)
T d1sb8a_ 93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSS-TYGD----HPGLPKVEDTIGKPL--- 163 (341)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGG-GGTT----CCCSSBCTTCCCCCC---
T ss_pred cccccccccccccccccCccchhheeehhHHHHHHHHHhc-CCceEEEcccce-eeCC----CCCCCccCCCCCCCC---
Confidence 999999986331 122333478899999999999999998 888999999976 5543 245678999988875
Q ss_pred cCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC---cchHHHHHHHHhCCCC--C--CCCCccceeHH
Q 020266 162 QSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---NTSAAAVLSLIKGAQT--Y--PNVTFGWVNVK 234 (328)
Q Consensus 162 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~v~v~ 234 (328)
+.|+.+|.++|.+++.+++.++++++++||+++|||+..+.. ..+..++.+++.|+++ + |.+.++|+|++
T Consensus 164 ---~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~ 240 (341)
T d1sb8a_ 164 ---SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIE 240 (341)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHH
T ss_pred ---CcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEe
Confidence 679999999999999999999999999999999999765443 2355677888888853 2 46889999999
Q ss_pred HHHHHHHHhhcCCC-C-CCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC-----CCCCCCCCceecchHHH-HhcCCc
Q 020266 235 DVANAHIQAFEVPS-A-NGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC-----ADDKPHVPTYQVLKEKV-KNLGIE 305 (328)
Q Consensus 235 D~a~~~~~~~~~~~-~-~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~k~-~~lg~~ 305 (328)
|+|.++..++.... . ++.||++. +..|+.|+++.+.+.++....+... ...........+|++|+ +.|||+
T Consensus 241 D~~~a~~~~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~ 320 (341)
T d1sb8a_ 241 NTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYA 320 (341)
T ss_dssp HHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCC
T ss_pred ccchhhhhhhhccccccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHCCC
Confidence 99999999887643 2 34898875 8899999999999988643322211 11122234556899999 889999
Q ss_pred -cccHHHHHHHHHHHHHHc
Q 020266 306 -FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 306 -~~~~~~~l~~~~~~~~~~ 323 (328)
.++++++|+++++||++.
T Consensus 321 p~~sl~~gi~~ti~wy~~~ 339 (341)
T d1sb8a_ 321 PKYDVSAGVALAMPWYIMF 339 (341)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHh
Confidence 899999999999999873
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.6e-44 Score=320.83 Aligned_cols=303 Identities=17% Similarity=0.206 Sum_probs=232.6
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh-hhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
||+|||||||||||++|+++|+++|++|.++.++..... ....... ....+++++.+|++|.+.+..+++++|.|+|
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~--~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~ 79 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEA--ILGDRVELVVGDIADAELVDKLAAKADAIVH 79 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGG--GCSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHH--hhcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence 789999999999999999999999998777766432211 1111111 1246899999999999999999999999999
Q ss_pred ccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCC--------CCCCCccccCCCCCCcc
Q 020266 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGK--------PRTPDVVVDETWFSDPE 158 (328)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~--------~~~~~~~~~E~~~~~~~ 158 (328)
+|+..... ...+..+.+++|+.|+.++++++... + .++|++||++ +||... ........+|+++..|
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~-~-~k~i~~ss~~-vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p- 155 (346)
T d1oc2a_ 80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-D-IRFHHVSTDE-VYGDLPLREDLPGHGEGPGEKFTAETNYNP- 155 (346)
T ss_dssp CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-T-CEEEEEEEGG-GGCCBCCGGGSTTTTCSTTSSBCTTSCCCC-
T ss_pred hhhcccccchhhCcccceeeehHhHHhhhhhhccc-c-ccccccccce-EecccCccccccccccCcccccccCCCCCC-
Confidence 99874321 11223478899999999999999997 5 4789999975 554210 1122334555555555
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CC--CCCCccceeHH
Q 020266 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TY--PNVTFGWVNVK 234 (328)
Q Consensus 159 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~ 234 (328)
.+.|+.+|.++|.+++.++++++++++++||++||||.... ...+..++.....+.+ .+ +++.++|+|++
T Consensus 156 -----~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~-~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~ 229 (346)
T d1oc2a_ 156 -----SSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI-EKFIPRQITNILAGIKPKLYGEGKNVRDWIHTN 229 (346)
T ss_dssp -----CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCT-TSHHHHHHHHHHHTCCCEEETTSCCEEECEEHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCc-cchhHHHHHHHHcCCceeEeCCCCccccccchh
Confidence 37799999999999999999999999999999999997543 3446667777777774 22 57889999999
Q ss_pred HHHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCceecchHHH-HhcCCc-c-ccH
Q 020266 235 DVANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC-ADDKPHVPTYQVLKEKV-KNLGIE-F-IPV 309 (328)
Q Consensus 235 D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~-~~lg~~-~-~~~ 309 (328)
|+|++++.++.++..++.||+.+ +..++.++++.+.+.++........ .........+.+|++|+ +.|||+ . +++
T Consensus 230 D~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~P~~t~l 309 (346)
T d1oc2a_ 230 DHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDF 309 (346)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCH
T ss_pred hHHHHHHHHHhhcccCccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHHHHCCCCcCCCH
Confidence 99999999999887778888765 8899999999999999864333222 22233345677899999 899998 4 579
Q ss_pred HHHHHHHHHHHHHc
Q 020266 310 EVSLKETIESLKEK 323 (328)
Q Consensus 310 ~~~l~~~~~~~~~~ 323 (328)
+++++++++||+++
T Consensus 310 ~e~i~~ti~w~~~n 323 (346)
T d1oc2a_ 310 SEGLEETIQWYTDN 323 (346)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=8.9e-44 Score=318.11 Aligned_cols=299 Identities=16% Similarity=0.142 Sum_probs=226.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++|||||||||||||++|+++|+++||+|++++|........ .....++..+|+++.+.+.++++++|.|||
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 85 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE--------DMFCDEFHLVDLRVMENCLKVTEGVDHVFN 85 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG--------GGTCSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhh--------hcccCcEEEeechhHHHHHHHhhcCCeEee
Confidence 478899999999999999999999999999998754432110 113467888999999999999999999999
Q ss_pred ccCCCCCC--CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCC--ccccCCCCCCccccccC
Q 020266 88 TASPFYHD--AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPD--VVVDETWFSDPEVCKQS 163 (328)
Q Consensus 88 ~a~~~~~~--~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~--~~~~E~~~~~~~~~~~~ 163 (328)
+|+..... ...........|+.++.+++++|++. ++++|||+||.++++......... ....|..+..|
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~-~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p------ 158 (363)
T d2c5aa1 86 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEP------ 158 (363)
T ss_dssp CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCC------
T ss_pred cccccccccccccccccccccccchhhHHHHhHHhh-CccccccccccccccccccccccccccccccCCcCCC------
Confidence 99764432 13344477889999999999999998 899999999975443222111111 12234444444
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCc---chHHHHHH-HHhCCC--CC--CCCCccceeHHH
Q 020266 164 ELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN---TSAAAVLS-LIKGAQ--TY--PNVTFGWVNVKD 235 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~---~~~~~~~~-~~~~~~--~~--~~~~~~~v~v~D 235 (328)
.+.|+.+|+++|.+++.++++++++++++||+++|||.+..... ........ .....+ .+ |.+.++|+|++|
T Consensus 159 ~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D 238 (363)
T d2c5aa1 159 QDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 238 (363)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhH
Confidence 47799999999999999999999999999999999997643321 12222222 222222 22 467899999999
Q ss_pred HHHHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHH-HhcCCc-cccHHHH
Q 020266 236 VANAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVS 312 (328)
Q Consensus 236 ~a~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~ 312 (328)
+++++..++++. .++.||+++ ..+++.|+++.+.+.++.. .+....+.+.......+|++|+ +.|||+ .++++++
T Consensus 239 ~~~~~~~~~~~~-~~~~~ni~~~~~~s~~~l~~~i~~~~g~~-~~i~~~~~~~~~~~~~~d~ska~~~LGw~p~~sleeg 316 (363)
T d2c5aa1 239 CVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEKK-LPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEG 316 (363)
T ss_dssp HHHHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTCC-CCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHH
T ss_pred HHHHHHHHHhCC-CCCeEEEecCCcccHHHHHHHHHHHhCCC-CceEeCCCCCCccccccCHHHHHHHhCCCCCCCHHHH
Confidence 999999998864 567999975 8999999999999998753 3333223334455677899999 889999 7999999
Q ss_pred HHHHHHHHHHc
Q 020266 313 LKETIESLKEK 323 (328)
Q Consensus 313 l~~~~~~~~~~ 323 (328)
++++++||+++
T Consensus 317 i~~ti~w~~~~ 327 (363)
T d2c5aa1 317 LRITYFWIKEQ 327 (363)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999764
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-44 Score=317.21 Aligned_cols=300 Identities=19% Similarity=0.212 Sum_probs=220.6
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh-hhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 86 (328)
|||||||||||||++|++.|+++|++|++++|...... .+...... ...+++++++|++|.+.+.++++ ++|+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL--GGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHH--HTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhh--cCCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 56999999999999999999999999999988433322 11111111 13479999999999999999987 799999
Q ss_pred EccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCC-CCCccccccCC
Q 020266 87 HTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW-FSDPEVCKQSE 164 (328)
Q Consensus 87 h~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~-~~~~~~~~~~~ 164 (328)
|+||..... ........+++|+.|+.+++++|++. +++++|++||.+ +|+.. ...+..|.+ ...| .
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~-~v~~~i~~Ss~~-vy~~~----~~~~~~e~~~~~~p------~ 146 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSAT-VYGDQ----PKIPYVESFPTGTP------Q 146 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGG-GGCSC----CSSSBCTTSCCCCC------S
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHh-CCCEEEecCcce-EEccc----cccccccccccCCC------c
Confidence 999964321 11223478999999999999999998 889999999976 45322 223334433 2233 4
Q ss_pred chhhhhhHHHHHHHHHHHHh-cCccEEEEcCCcccCCCCCCCC--------cchHHHHHHHHhCC--C--CC--------
Q 020266 165 LWYPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQPTL--------NTSAAAVLSLIKGA--Q--TY-------- 223 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~~~--------~~~~~~~~~~~~~~--~--~~-------- 223 (328)
+.|+.+|..+|.++..+..+ ++++++++||+++|||...... ..+...+.+...+. + ++
T Consensus 147 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~ 226 (338)
T d1udca_ 147 SPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED 226 (338)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTT
T ss_pred chHHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCC
Confidence 67999999999999977665 5899999999999998643221 22344444443332 2 11
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCCC---CCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCceecchHH
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPSA---NGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKCADD-KPHVPTYQVLKEK 298 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~~---~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k 298 (328)
+.+.++|+|++|++.++..+...... .++||+++ +.+|+.|+++.+.+.++.. ++....+. ......+.+|++|
T Consensus 227 g~~~rd~i~v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k 305 (338)
T d1udca_ 227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKP-VNYHFAPRREGDLPAYWADASK 305 (338)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSC-CCEEEECCCTTCCSBCCBCCHH
T ss_pred CCceeeEEEEeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCC-CceEECCCCCCCCCEeeECHHH
Confidence 45678999999999988876653222 23899986 7899999999999998742 22222222 2233556789999
Q ss_pred H-HhcCCc-cccHHHHHHHHHHHHHHcC
Q 020266 299 V-KNLGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 299 ~-~~lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
+ +.|||+ .++++++|+++++|++++.
T Consensus 306 ~~~~lgwkp~~~l~egi~~ti~w~~~~~ 333 (338)
T d1udca_ 306 ADRELNWRVTRTLDEMAQDTWHWQSRHP 333 (338)
T ss_dssp HHHHHCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHCCCcCCCHHHHHHHHHHHHHhch
Confidence 9 789999 8999999999999999984
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5.2e-43 Score=307.90 Aligned_cols=298 Identities=17% Similarity=0.130 Sum_probs=230.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh--hhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK--KTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 85 (328)
|+|||||||||||++|+++|+++||+|++++|...... .+..+ ...++++++.+|++|.+.+.+.+. ..+++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 76 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL----GIEGDIQYEDGDMADACSVQRAVIKAQPQEV 76 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHT----TCGGGEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHh----cccCCcEEEEccccChHHhhhhhcccccccc
Confidence 68999999999999999999999999999999654322 22221 234579999999999998888776 46899
Q ss_pred EEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 86 CHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 86 ih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
+|+|+..... ........++.|+.|+.+++++|++.+..++|++.||. ++|+.. .....+|+++..|.
T Consensus 77 ~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~-~~~~~~----~~~~~~E~~~~~p~------ 145 (321)
T d1rpna_ 77 YNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTS-EMFGLI----QAERQDENTPFYPR------ 145 (321)
T ss_dssp EECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEG-GGGCSC----SSSSBCTTSCCCCC------
T ss_pred ccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccch-hhcCcc----cCCCCCCCCCcccc------
Confidence 9998764422 22334578899999999999999998445577777774 567533 44567898887765
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCC-CC--C--CCCCccceeHHHHH
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGA-QT--Y--PNVTFGWVNVKDVA 237 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~-~~--~--~~~~~~~v~v~D~a 237 (328)
+.|+.+|.++|.++..++.+++++++++||+++|||...... +.+...+.+...++ +. + +++.++|+|++|+|
T Consensus 146 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~ 225 (321)
T d1rpna_ 146 SPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYV 225 (321)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHH
Confidence 679999999999999999999999999999999999754332 23455666666666 32 2 57889999999999
Q ss_pred HHHHHhhcCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCC-CCC---CCCCCCCceecchHHH-HhcCCc-cccHH
Q 020266 238 NAHIQAFEVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPE-KCA---DDKPHVPTYQVLKEKV-KNLGIE-FIPVE 310 (328)
Q Consensus 238 ~~~~~~~~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~k~-~~lg~~-~~~~~ 310 (328)
+++..++.++. .+.||+++ +..++.++++.+.+.++...... ... ..+.....+..|++|+ +.|||+ .++++
T Consensus 226 ~~~~~~~~~~~-~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~ 304 (321)
T d1rpna_ 226 EAMWLMLQQDK-ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLD 304 (321)
T ss_dssp HHHHHHHHSSS-CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHH
T ss_pred HHHHHHHhcCC-cCCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCCCHH
Confidence 99999999864 56788875 89999999999999987431111 111 1112234567899999 789999 78999
Q ss_pred HHHHHHHHHHHHc
Q 020266 311 VSLKETIESLKEK 323 (328)
Q Consensus 311 ~~l~~~~~~~~~~ 323 (328)
|+|+++++|+.++
T Consensus 305 e~i~~tv~~~l~~ 317 (321)
T d1rpna_ 305 ELIRMMVEADLRR 317 (321)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998653
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=5.4e-42 Score=304.00 Aligned_cols=310 Identities=28% Similarity=0.441 Sum_probs=233.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++|+|||||||||||++|+++|+++|++|+++.|+..+...+.+.............+.+|++|.+.+.+++.++|+|+|
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~ 89 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH 89 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence 48999999999999999999999999999999998766665554443333333455688999999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCC----------c
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSD----------P 157 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~----------~ 157 (328)
+|+..... ......+..|+.|+.+++++|.+..++++|||+||++++++.. +.......+|+.+.. .
T Consensus 90 ~a~~~~~~--~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~e 166 (342)
T d1y1pa1 90 IASVVSFS--NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPK-PNVEGIYLDEKSWNLESIDKAKTLPE 166 (342)
T ss_dssp CCCCCSCC--SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCC-TTCCCCEECTTCCCHHHHHHHHHSCT
T ss_pred hccccccc--ccccccccchhhhHHHHHHhhhcccccccccccccceeeccCC-CCCCCccccccccccccccccccccc
Confidence 99986543 2334778899999999999999976789999999976665432 222333344433211 1
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCCCC---CCCCCccc
Q 020266 158 EVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQT---YPNVTFGW 230 (328)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~ 230 (328)
..+..+.+.|+.+|..+|.+++.+++++ +++++++||+.+|||...+.. ..+..++..+..+... .+.+.++|
T Consensus 167 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 246 (342)
T d1y1pa1 167 SDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYY 246 (342)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEE
T ss_pred cCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccCCccceee
Confidence 1112233679999999999999998876 477889999999999654322 3456677777777732 25777899
Q ss_pred eeHHHHHHHHHHhhcCCCCCCcEEEe-cCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcee--cchHHHHhcCCc-c
Q 020266 231 VNVKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQ--VLKEKVKNLGIE-F 306 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~lg~~-~ 306 (328)
+|++|+|++++.+++++...|.|+++ ++.++++|+++.+.+.+|...++...+........+. .+.++++.+||. +
T Consensus 247 v~v~Dva~~~i~~l~~~~~~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~~~~~~~~~~~~~s~~~~k~lg~~~~ 326 (342)
T d1y1pa1 247 VSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGW 326 (342)
T ss_dssp EEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCCCCCCCEECCHHHHHHHHHTTCCSC
T ss_pred eeHHHHHHHHHHhhcCccccceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCccCcccccccchHHHHHHHHcCCCCC
Confidence 99999999999999988778866655 5899999999999999987766665544322222222 234444889999 8
Q ss_pred ccHHHHHHHHHHHH
Q 020266 307 IPVEVSLKETIESL 320 (328)
Q Consensus 307 ~~~~~~l~~~~~~~ 320 (328)
++++++++++++.+
T Consensus 327 ~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 327 RSIEESIKDLVGSE 340 (342)
T ss_dssp CCHHHHHHHHHCCS
T ss_pred cCHHHHHHHHHHhC
Confidence 99999999998753
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-42 Score=307.25 Aligned_cols=303 Identities=15% Similarity=0.212 Sum_probs=222.6
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHH-hhCCccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-IVDGCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~vih 87 (328)
|||||||||||||++|+++|+++|+ +|+++++.......+. ..++++++++|+++.+++.+ +.+++|+|||
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-------~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih 73 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHSEWIEYHVKKCDVVLP 73 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------TCTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-------cCCCeEEEECccCChHHHHHHHHhCCCcccc
Confidence 4799999999999999999999994 8999988654433211 24689999999999877655 6668999999
Q ss_pred ccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc-ccccCCc
Q 020266 88 TASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE-VCKQSEL 165 (328)
Q Consensus 88 ~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~-~~~~~~~ 165 (328)
+|+..... ........+++|+.|+.+++++|.+. +. +++++||.+++++ . ......|.....+. ....+.+
T Consensus 74 ~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~-~~-~~~~~ss~~~~~~-~----~~~~~~~~~~~~~~~~~~~p~~ 146 (342)
T d2blla1 74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-RK-RIIFPSTSEVYGM-C----SDKYFDEDHSNLIVGPVNKPRW 146 (342)
T ss_dssp CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEECCGGGGBT-C----CCSSBCTTTCCCBCCCTTCGGG
T ss_pred ccccccccccccCCccccccccccccccccccccc-cc-ccccccccccccc-c----cccccccccccccccccCCCcc
Confidence 99974421 11222477899999999999999997 65 5678888654443 2 12222332222111 1112346
Q ss_pred hhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC-------cchHHHHHHHHhCCCC--C--CCCCccceeHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL-------NTSAAAVLSLIKGAQT--Y--PNVTFGWVNVK 234 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~--~--~~~~~~~v~v~ 234 (328)
.|+.||.++|.+++.++++++++++++||+.+|||...... .....++.+++.|++. + |++.++|+|++
T Consensus 147 ~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~ 226 (342)
T d2blla1 147 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 226 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHH
T ss_pred hhhhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccc
Confidence 79999999999999999999999999999999998644322 2356778888888853 2 57889999999
Q ss_pred HHHHHHHHhhcCCC--CCC-cEEEe-cC-ccCHHHHHHHHHHhCCCCCCCCCCC---------------CCCCCCCceec
Q 020266 235 DVANAHIQAFEVPS--ANG-RYCLV-ER-VSHYSEIVNIIRELYPAFQLPEKCA---------------DDKPHVPTYQV 294 (328)
Q Consensus 235 D~a~~~~~~~~~~~--~~g-~~~~~-~~-~~~~~el~~~i~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 294 (328)
|+|+++..+++++. ..| +||++ ++ .+|+.|+++.+.+.++........+ ..........+
T Consensus 227 D~~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (342)
T d2blla1 227 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKP 306 (342)
T ss_dssp HHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCB
T ss_pred cccceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceecccccccccccccccccc
Confidence 99999999998753 234 89996 44 5899999999999876332111110 00111123457
Q ss_pred chHHH-HhcCCc-cccHHHHHHHHHHHHHHcCCC
Q 020266 295 LKEKV-KNLGIE-FIPVEVSLKETIESLKEKGFV 326 (328)
Q Consensus 295 ~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~~~ 326 (328)
|++|+ +.|||+ .++++|+|+++++||+++..+
T Consensus 307 d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~~ 340 (342)
T d2blla1 307 SIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (342)
T ss_dssp CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcCC
Confidence 99999 889999 789999999999999887543
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-42 Score=304.23 Aligned_cols=304 Identities=19% Similarity=0.212 Sum_probs=224.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 86 (328)
|.|||||||||||++|+++|+++|++|+++++.. ............ ...+++++.+|++|.+.+..++. ++|+||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 79 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL--TKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 79 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHH--HTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhh--cccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence 4699999999999999999999999999998733 222222222111 13578999999999999998886 799999
Q ss_pred EccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 87 HTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 87 h~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
|+||.... ...........+|+.|+.+|+++|++. ++++||++||.+ +||.........+++|+.+..|. +
T Consensus 80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~-~i~~~i~~SS~~-vyg~~~~~~~~~~~~e~~~~~p~------~ 151 (347)
T d1z45a2 80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSAT-VYGDATRFPNMIPIPEECPLGPT------N 151 (347)
T ss_dssp ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGG-GGCCGGGSTTCCSBCTTSCCCCC------S
T ss_pred EccccccccccccCcccccccchhhhHHHHHHHHhc-ccceEEeeccee-eecCcccCCCCCccccccCCCCC------C
Confidence 99997532 112223477889999999999999997 889999999976 55544334455678888776664 6
Q ss_pred hhhhhhHHHHHHHHHHHHh--cCccEEEEcCCcccCCCCCCC--------CcchHHHHHHHHhCC--C--CCC-------
Q 020266 166 WYPLSKTLAEDAAWKFAKE--KSIDLVTINPAMVIGPLLQPT--------LNTSAAAVLSLIKGA--Q--TYP------- 224 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~--~~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~--~--~~~------- 224 (328)
.|+.+|.++|.+++.+.+. .+++++++||+++||+..... ...+...+.+...+. + +++
T Consensus 152 ~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~ 231 (347)
T d1z45a2 152 PYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRD 231 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CC
T ss_pred hhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccC
Confidence 7999999999999998764 578999999999999753221 122444455544443 2 222
Q ss_pred -CCCccceeHHHHHHHHHHhhcCC------C-CCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCceec
Q 020266 225 -NVTFGWVNVKDVANAHIQAFEVP------S-ANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC-ADDKPHVPTYQV 294 (328)
Q Consensus 225 -~~~~~~v~v~D~a~~~~~~~~~~------~-~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~ 294 (328)
...+|++++.|++.+++.++... . ..+.||+++ +++|+.|+++.+.+.++.. .+... .........+.+
T Consensus 232 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~ 310 (347)
T d1z45a2 232 GTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGID-LPYKVTGRRAGDVLNLTA 310 (347)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCC-CCC---------CCCCCB
T ss_pred CceeeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCC-CceEeCCCCCCCCCEeeE
Confidence 34578999999999998887531 1 133899975 8999999999999998843 22222 222223345678
Q ss_pred chHHH-HhcCCc-cccHHHHHHHHHHHHHHcC
Q 020266 295 LKEKV-KNLGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 295 ~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
|++|+ +.|||+ .++++|+|+++++|++++.
T Consensus 311 d~sk~~~~lGw~p~~~lee~i~~ti~w~~~np 342 (347)
T d1z45a2 311 KPDRAKRELKWQTELQVEDSCKDLWKWTTENP 342 (347)
T ss_dssp CCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCh
Confidence 99999 889999 8899999999999999984
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-41 Score=301.03 Aligned_cols=299 Identities=16% Similarity=0.122 Sum_probs=219.4
Q ss_pred CeE-EEECCccHHHHHHHHHHHHCCCeEEEEecCCCC--hhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhC--Cc
Q 020266 10 KVV-CVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVD--GC 82 (328)
Q Consensus 10 ~~v-lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~--~~ 82 (328)
||| ||||||||||++|+++|+++||+|++++|..+. ...+..+.... ....+++++.+|++|++.+..++. ++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 578 999999999999999999999999999996543 22222221111 123478999999999999999886 57
Q ss_pred cEEEEccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020266 83 DGVCHTASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (328)
Q Consensus 83 d~vih~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 159 (328)
++|+|+|+.... ....+....+++|+.||.++++++++.+ +.++|||+||.+ +||.. ...+++|+++..|.
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~-vyg~~----~~~~~~E~~~~~P~- 154 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSE-LYGKV----QEIPQKETTPFYPR- 154 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGG-GTCSC----SSSSBCTTSCCCCC-
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchh-eecCC----CCCCCCCCCCCCCC-
Confidence 899999886432 1122334678999999999999999872 235899999965 66532 45678999888764
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhC-CCC--C--CCCCcccee
Q 020266 160 CKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKG-AQT--Y--PNVTFGWVN 232 (328)
Q Consensus 160 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~-~~~--~--~~~~~~~v~ 232 (328)
++|+.||.++|.+++.+++.++++++++||+++|||...... ......+.....+ .+. + +++.++|+|
T Consensus 155 -----~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~ 229 (347)
T d1t2aa_ 155 -----SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGH 229 (347)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEE
T ss_pred -----CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeE
Confidence 679999999999999999999999999999999999755432 1122223333333 332 2 578899999
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEe-cCccCHHHHHHHHHHhCCCCCCCCCC--------C-------------CCCCCCC
Q 020266 233 VKDVANAHIQAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPAFQLPEKC--------A-------------DDKPHVP 290 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~el~~~i~~~~~~~~~~~~~--------~-------------~~~~~~~ 290 (328)
++|+++++..++++.. .+.|++. +...++.+..+.+...++........ . ..+....
T Consensus 230 v~D~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~ 308 (347)
T d1t2aa_ 230 AKDYVEAMWLMLQNDE-PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVD 308 (347)
T ss_dssp HHHHHHHHHHHHHSSS-CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCC
T ss_pred ecHHHHHHHHHhhcCC-CccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCCCcC
Confidence 9999999999999864 4567666 48889999999988887642110000 0 0011223
Q ss_pred ceecchHHH-HhcCCc-cccHHHHHHHHHHHH
Q 020266 291 TYQVLKEKV-KNLGIE-FIPVEVSLKETIESL 320 (328)
Q Consensus 291 ~~~~~~~k~-~~lg~~-~~~~~~~l~~~~~~~ 320 (328)
.+.+|++|+ +.|||+ .++++|++++++++.
T Consensus 309 ~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~ 340 (347)
T d1t2aa_ 309 FLQGDCTKAKQKLNWKPRVAFDELVREMVHAD 340 (347)
T ss_dssp BCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHH
T ss_pred EeeECHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 456799999 889999 789999999998754
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-41 Score=298.60 Aligned_cols=302 Identities=18% Similarity=0.174 Sum_probs=217.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC------CC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP------ND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~------~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
|||||||||||||++|+++|+++|++|++++|.. .. ...+...... ...++.++.+|++|.+.+.+++.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~l~~~~~~~ 80 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL--TGRSVEFEEMDILDQGALQRLFKKY 80 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH--HTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHh--cCCCcEEEEeecccccccccccccc
Confidence 6899999999999999999999999999997521 11 1111111111 23579999999999999988776
Q ss_pred CccEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020266 81 GCDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV 159 (328)
Q Consensus 81 ~~d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 159 (328)
.+++|+|+||..... ......+.+++|+.|+.+++++++.. ++++|||+||+. +++.... .....+.....
T Consensus 81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~-~v~~~i~~ss~~-~~~~~~~---~~~~~~~~~~~--- 152 (346)
T d1ek6a_ 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSAT-VYGNPQY---LPLDEAHPTGG--- 152 (346)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGG-GGCSCSS---SSBCTTSCCCC---
T ss_pred ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhc-Ccccccccccce-eeecccc---ccccccccccc---
Confidence 467899999974421 11223477899999999999999998 889999999975 4543211 11111221122
Q ss_pred cccCCchhhhhhHHHHHHHHHHHHh-cCccEEEEcCCcccCCCCCCC--------CcchHHHHHH-HHhCC-C--C----
Q 020266 160 CKQSELWYPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQPT--------LNTSAAAVLS-LIKGA-Q--T---- 222 (328)
Q Consensus 160 ~~~~~~~Y~~sK~~~E~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~-~~~~~-~--~---- 222 (328)
+.++|+.+|..+|..+.++++. .+++.+++||+.+|||..... ...+...+.. ..... + +
T Consensus 153 ---~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~ 229 (346)
T d1ek6a_ 153 ---CTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGND 229 (346)
T ss_dssp ---CSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSC
T ss_pred ---cCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCc
Confidence 2467999999999999998775 589999999999999864321 1122333333 33322 1 1
Q ss_pred ----CCCCCccceeHHHHHHHHHHhhcCCC---CCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCcee
Q 020266 223 ----YPNVTFGWVNVKDVANAHIQAFEVPS---ANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC-ADDKPHVPTYQ 293 (328)
Q Consensus 223 ----~~~~~~~~v~v~D~a~~~~~~~~~~~---~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~ 293 (328)
-+.+.|+|+|++|+|.++..++.... ..++||+++ ..+++.|+++.+.+.++.. .+... +..+.....+.
T Consensus 230 ~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~-~~~~~~~~~~~e~~~~~ 308 (346)
T d1ek6a_ 230 YDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKK-IPYKVVARREGDVAACY 308 (346)
T ss_dssp SSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSC-CCEEEECCCTTCCSEEC
T ss_pred ccCCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCC-CCeEECCCCCCCCCEee
Confidence 14567899999999999988765422 223899885 8899999999999998842 23222 22223345677
Q ss_pred cchHHH-HhcCCc-cccHHHHHHHHHHHHHHcCC
Q 020266 294 VLKEKV-KNLGIE-FIPVEVSLKETIESLKEKGF 325 (328)
Q Consensus 294 ~~~~k~-~~lg~~-~~~~~~~l~~~~~~~~~~~~ 325 (328)
+|++|+ +.|||+ .++++|+++++++||+++..
T Consensus 309 ~d~~k~~~~lgw~p~~slee~I~~~i~w~~~n~~ 342 (346)
T d1ek6a_ 309 ANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (346)
T ss_dssp BCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred ECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCHh
Confidence 899999 889999 78999999999999998753
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.9e-41 Score=300.06 Aligned_cols=302 Identities=16% Similarity=0.117 Sum_probs=224.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC--hhhhhhhhhc--cCCCCcEEEEEccCCCcCchHHhhC--Ccc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND--PKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVD--GCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 83 (328)
|++||||||||||++|+++|+++||+|++++|..+. ...+..+... ......++++.+|+++.+.+...++ ++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 789999999999999999999999999999995432 2222222111 1123568899999999999988876 689
Q ss_pred EEEEccCCCCCCC-CCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020266 84 GVCHTASPFYHDA-KDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPE 158 (328)
Q Consensus 84 ~vih~a~~~~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 158 (328)
+|||+|+...... .+.....++.|+.++.+++++++.. ....++++.||. .+++. ...+.+|+++..|.
T Consensus 82 ~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~-~~~~~-----~~~~~~E~~~~~p~ 155 (339)
T d1n7ha_ 82 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSS-EMFGS-----TPPPQSETTPFHPR 155 (339)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEG-GGGTT-----SCSSBCTTSCCCCC
T ss_pred hhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccc-eeccc-----CCCCCCCCCCCCCc
Confidence 9999999744321 1233477889999999999998753 133467777775 45532 33567898887764
Q ss_pred ccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCC-CC--C--CCCCccce
Q 020266 159 VCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGA-QT--Y--PNVTFGWV 231 (328)
Q Consensus 159 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~-~~--~--~~~~~~~v 231 (328)
+.|+.+|+.+|.++..+++.++++++++||++||||...... ..+...+.+...+. +. . +.+.++|+
T Consensus 156 ------~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~ 229 (339)
T d1n7ha_ 156 ------SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWG 229 (339)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECE
T ss_pred ------chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccce
Confidence 779999999999999999999999999999999999755432 22334444555554 22 2 56889999
Q ss_pred eHHHHHHHHHHhhcCCCCCCcEEEecCccCHHHHHHHHHHhCCCCCCCC-C--CC-CCCCCCCceecchHHH-HhcCCc-
Q 020266 232 NVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPE-K--CA-DDKPHVPTYQVLKEKV-KNLGIE- 305 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~el~~~i~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~~k~-~~lg~~- 305 (328)
|++|+|+++..+++++...+.++..+...++.++++.+.+.++...... . .. ..+.....+..|++|+ +.|||+
T Consensus 230 ~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~P 309 (339)
T d1n7ha_ 230 FAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKP 309 (339)
T ss_dssp EHHHHHHHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCC
T ss_pred eeehHHHHHHHHHhcCCCCccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCCc
Confidence 9999999999999987655555666788999999999999987431110 0 11 1122334567899999 889999
Q ss_pred cccHHHHHHHHHHHHHHc
Q 020266 306 FIPVEVSLKETIESLKEK 323 (328)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~ 323 (328)
..+++++|+++++|+++.
T Consensus 310 ~~~le~gi~~ti~~~~~~ 327 (339)
T d1n7ha_ 310 QVGFEKLVKMMVDEDLEL 327 (339)
T ss_dssp CSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 789999999999999653
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.5e-41 Score=305.30 Aligned_cols=313 Identities=18% Similarity=0.175 Sum_probs=220.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecC-------------CC---C-hhhhhhhhhccCCCCcEEEEEccCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-------------PN---D-PKKTRHLLALDGASERLQLFKANLLE 71 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-------------~~---~-~~~~~~~~~~~~~~~~~~~~~~Dl~~ 71 (328)
+|||||||||||||++|+++|++.||+|++++.- .. . ...+...... ...+++++.+|++|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~Dl~d 78 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL--TGKSIELYVGDICD 78 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH--HCCCCEEEESCTTS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhh--cCCCcEEEEccCCC
Confidence 5899999999999999999999999999999620 00 1 1111111111 13579999999999
Q ss_pred cCchHHhhC--CccEEEEccCCCCCC----CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCC
Q 020266 72 EGSFDSIVD--GCDGVCHTASPFYHD----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 72 ~~~~~~~~~--~~d~vih~a~~~~~~----~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
.+.+.++++ ++|+|||+||..... ........+++|+.|+.+++++|++....+++++.||. ++|+.......
T Consensus 79 ~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~-~~~~~~~~~~~ 157 (393)
T d1i24a_ 79 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTM-GEYGTPNIDIE 157 (393)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCG-GGGCCCSSCBC
T ss_pred HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccc-ccccccccccc
Confidence 999999987 579999999874321 11223366889999999999999997444567777775 56643221111
Q ss_pred --CccccCCCCCC-ccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC----------------
Q 020266 146 --DVVVDETWFSD-PEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL---------------- 206 (328)
Q Consensus 146 --~~~~~E~~~~~-~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~---------------- 206 (328)
.....|+.... ...+..+.+.|+.+|.++|.++..++++++++++++||+++|||+.....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 237 (393)
T d1i24a_ 158 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 237 (393)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTC
T ss_pred cccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccc
Confidence 11222221110 01112245779999999999999999999999999999999999754321
Q ss_pred cchHHHHHHHHhCCC--CC--CCCCccceeHHHHHHHHHHhhcCCCCCCcEE---EecCccCHHHHHHHHHHhCCCCCC-
Q 020266 207 NTSAAAVLSLIKGAQ--TY--PNVTFGWVNVKDVANAHIQAFEVPSANGRYC---LVERVSHYSEIVNIIRELYPAFQL- 278 (328)
Q Consensus 207 ~~~~~~~~~~~~~~~--~~--~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~---~~~~~~~~~el~~~i~~~~~~~~~- 278 (328)
..+..++.+...+.+ ++ +.+.|+|+|++|+++++..+++++...|.|+ .+++.+++.|+++.+.+..+....
T Consensus 238 ~~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~ 317 (393)
T d1i24a_ 238 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLD 317 (393)
T ss_dssp CHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCC
T ss_pred cchhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhhCCC
Confidence 234567777888874 33 5678999999999999999999877777543 334788999999999887543211
Q ss_pred -CCC---CCCCCCCCCceecchHHHHhcCCc-cccHHHHHHHHHHHHHHcC
Q 020266 279 -PEK---CADDKPHVPTYQVLKEKVKNLGIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 279 -~~~---~~~~~~~~~~~~~~~~k~~~lg~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
+.. .+........+..|++|+++|||+ .++++++++++++|++..+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~d~~k~~~LGw~P~~~~~~~i~~~~~~~~~~k 368 (393)
T d1i24a_ 318 VKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFK 368 (393)
T ss_dssp CCEEEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTG
T ss_pred cceeeccCCCCCCCccEecCCHHHHHHcCCccccCHHHHHHHHHHHHHHHH
Confidence 111 111122334556789999779999 8899999999999987753
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-41 Score=295.65 Aligned_cols=287 Identities=14% Similarity=0.119 Sum_probs=212.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 86 (328)
.|||||||||||||++|+++|+++|+.|+++++..+ .|+++.+.+.++++ .+|.|+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~----------------------~~~~~~~~~~~~~~~~~~d~v~ 59 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE----------------------LNLLDSRAVHDFFASERIDQVY 59 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT----------------------CCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh----------------------ccccCHHHHHHHHhhcCCCEEE
Confidence 468999999999999999999999999987754321 48888888888876 589999
Q ss_pred EccCCCCCCC--CCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCC
Q 020266 87 HTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE 164 (328)
Q Consensus 87 h~a~~~~~~~--~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 164 (328)
|+|+...... .....+.+++|+.||.+|+++|++. ++++|||+||++ +||.. ...+++|+.+.... +..+.
T Consensus 60 ~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~v~~~i~~SS~~-vyg~~----~~~~~~E~~~~~~~-~~~~~ 132 (315)
T d1e6ua_ 60 LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSC-IYPKL----AKQPMAESELLQGT-LEPTN 132 (315)
T ss_dssp ECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGG-GSCTT----CCSSBCGGGTTSSC-CCGGG
T ss_pred EcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECCce-EcCCC----CCCCccCCccccCC-CCCCC
Confidence 9997754321 2223467889999999999999998 889999999976 45432 23456665443321 11224
Q ss_pred chhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCc--chH------HHHHHHHhCCC--CC--CCCCcccee
Q 020266 165 LWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--TSA------AAVLSLIKGAQ--TY--PNVTFGWVN 232 (328)
Q Consensus 165 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~------~~~~~~~~~~~--~~--~~~~~~~v~ 232 (328)
++|+.||.++|.+++.+++++|++++++||++||||++..... ... ..+.....+.+ .. +.+.++|+|
T Consensus 133 ~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~ 212 (315)
T d1e6ua_ 133 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLH 212 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEE
Confidence 5799999999999999999999999999999999997643321 111 11222333332 12 467799999
Q ss_pred HHHHHHHHHHhhcCCC---------CCCcEEEe-cCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchHHHHhc
Q 020266 233 VKDVANAHIQAFEVPS---------ANGRYCLV-ERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVKNL 302 (328)
Q Consensus 233 v~D~a~~~~~~~~~~~---------~~g~~~~~-~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 302 (328)
++|+++++..++.+.. ..+.++++ +...++.++++.+.+.++...........+.....+.+|++|+++|
T Consensus 213 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d~sk~k~L 292 (315)
T d1e6ua_ 213 VDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQL 292 (315)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHHT
T ss_pred eehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccCHHHHHHc
Confidence 9999999999986532 23367776 4789999999999998875422222222222334567899999779
Q ss_pred CCc-cccHHHHHHHHHHHHHHcC
Q 020266 303 GIE-FIPVEVSLKETIESLKEKG 324 (328)
Q Consensus 303 g~~-~~~~~~~l~~~~~~~~~~~ 324 (328)
||+ .++++|+++++++||+++.
T Consensus 293 g~~p~~~l~e~i~~ti~w~~~N~ 315 (315)
T d1e6ua_ 293 GWYHEISLEAGLASTYQWFLENQ 315 (315)
T ss_dssp TCCCCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHcC
Confidence 999 8899999999999999763
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=8.2e-40 Score=294.30 Aligned_cols=306 Identities=18% Similarity=0.166 Sum_probs=219.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHH-CCCeEEEEec---CCC------Chhhhhhhhh------ccCCCCcEEEEEccCCCc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLS-RGYTVKASVR---DPN------DPKKTRHLLA------LDGASERLQLFKANLLEE 72 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r---~~~------~~~~~~~~~~------~~~~~~~~~~~~~Dl~~~ 72 (328)
.|||||||||||||++|+++|++ .||+|+++++ +.. ..+.....+. .......+.++.+|++|.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 46899999999999999999986 6899999975 111 1111111111 111234688999999999
Q ss_pred CchHHhhC---CccEEEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCC---CCC
Q 020266 73 GSFDSIVD---GCDGVCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKP---RTP 145 (328)
Q Consensus 73 ~~~~~~~~---~~d~vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~---~~~ 145 (328)
+.+.++++ ++|+|||+|+..... ........++.|+.++.+++++++.. ++++++++||.+.++ .... ...
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~-~~~~~~~~~s~~~~~-~~~~~~~~~~ 159 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFSSSAAIFG-NPTMGSVSTN 159 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGTB-SCCC-----C
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhcc-CCccccccccccccc-cccccccccc
Confidence 99988875 679999999974432 12223367889999999999999998 888999999976444 2211 122
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCc--------chHHHHHHHH
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLN--------TSAAAVLSLI 217 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--------~~~~~~~~~~ 217 (328)
..++.|+++..| .+.|+.+|..+|.+++.+.+.++++++++||+++|||.+..... .+...+.+++
T Consensus 160 ~~~~~e~~~~~p------~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~ 233 (383)
T d1gy8a_ 160 AEPIDINAKKSP------ESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVM 233 (383)
T ss_dssp CCCBCTTSCCBC------SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHH
T ss_pred ccccccccCCCC------CCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHH
Confidence 345666666555 37799999999999999999999999999999999997654321 1222333322
Q ss_pred h----------------CCC--CC--------CCCCccceeHHHHHHHHHHhhcCC---------CCCCcEEEe-cCccC
Q 020266 218 K----------------GAQ--TY--------PNVTFGWVNVKDVANAHIQAFEVP---------SANGRYCLV-ERVSH 261 (328)
Q Consensus 218 ~----------------~~~--~~--------~~~~~~~v~v~D~a~~~~~~~~~~---------~~~g~~~~~-~~~~~ 261 (328)
. +.+ .+ |.+.|+|+|++|+|+++..+++.. ...++||++ ++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s 313 (383)
T d1gy8a_ 234 SDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYS 313 (383)
T ss_dssp HHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEE
T ss_pred hhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCcee
Confidence 1 111 11 356789999999999999988631 112389996 48999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCC-CCCCCCCceecchHHH-HhcCCc-cccHHHHHHHH-HHHHHHc
Q 020266 262 YSEIVNIIRELYPAFQLPEKCA-DDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKET-IESLKEK 323 (328)
Q Consensus 262 ~~el~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~~-~~~~~~~ 323 (328)
+.|+++.+.+.++.. .+.... ........+.+|++|+ +.|||+ ..+++|+|+++ +.|++.+
T Consensus 314 ~~el~~~i~~~~~~~-~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~ 378 (383)
T d1gy8a_ 314 VREVIEVARKTTGHP-IPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH 378 (383)
T ss_dssp HHHHHHHHHHHHCCC-CCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-CceEECCCCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhC
Confidence 999999999998743 222222 2222344567899999 889999 78999999997 5788776
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=1.5e-39 Score=289.63 Aligned_cols=303 Identities=16% Similarity=0.101 Sum_probs=223.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 84 (328)
+++|||||||||||||++|+++|+++|++|++++|+..+...+..... ..++++++.+|++|++.+.++++ .+|+
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~---~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~ 82 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR---VADGMQSEIGDIRDQNKLLESIREFQPEI 82 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT---TTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhh---cccCCeEEEeeccChHhhhhhhhhchhhh
Confidence 478999999999999999999999999999999998776554332221 23579999999999999988887 5799
Q ss_pred EEEccCCCCCC-CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccC
Q 020266 85 VCHTASPFYHD-AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQS 163 (328)
Q Consensus 85 vih~a~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 163 (328)
|+|+|+..... ..+.....+++|+.|+.+++++++.......+++.||. .+++.. ....+..|+++..|.
T Consensus 83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~-~~~~~~---~~~~~~~~~~~~~p~----- 153 (356)
T d1rkxa_ 83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSD-KCYDNK---EWIWGYRENEAMGGY----- 153 (356)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCG-GGBCCC---CSSSCBCTTSCBCCS-----
T ss_pred hhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccccc-cccccc---ccccccccccccCCC-----
Confidence 99999975432 12334578899999999999999987455556666664 444322 234556666665553
Q ss_pred CchhhhhhHHHHHHHHHHHHh---------cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC---CCCCCCccce
Q 020266 164 ELWYPLSKTLAEDAAWKFAKE---------KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ---TYPNVTFGWV 231 (328)
Q Consensus 164 ~~~Y~~sK~~~E~~~~~~~~~---------~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v 231 (328)
++|+.+|..+|..+..++.+ +++.++++||+++|||++......+..++.....+.+ ..+.+.++++
T Consensus 154 -~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (356)
T d1rkxa_ 154 -DPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQ 232 (356)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCE
T ss_pred -CccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCceEEeecccccccc
Confidence 67999999999999887763 3678999999999999865544444555555555444 2257889999
Q ss_pred eHHHHHHHHHHhhcCCCCCC-----cEEEe---cCccCHHHHHHHHHHhCCCCCCCCCCCCCC-CCCCceecchHHH-Hh
Q 020266 232 NVKDVANAHIQAFEVPSANG-----RYCLV---ERVSHYSEIVNIIRELYPAFQLPEKCADDK-PHVPTYQVLKEKV-KN 301 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~~~~g-----~~~~~---~~~~~~~el~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~-~~ 301 (328)
|++|+++++..++.++...+ ..+.. +...++.++++.+.+.++............ .....+.+|++|+ ++
T Consensus 233 ~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~ 312 (356)
T d1rkxa_ 233 HVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQ 312 (356)
T ss_dssp ETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHH
T ss_pred ccccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHHH
Confidence 99999999999987643322 22222 257899999999999987432211111112 2234567899999 88
Q ss_pred cCCc-cccHHHHHHHHHHHHHH
Q 020266 302 LGIE-FIPVEVSLKETIESLKE 322 (328)
Q Consensus 302 lg~~-~~~~~~~l~~~~~~~~~ 322 (328)
|||+ .++++++|+++++||++
T Consensus 313 LGw~P~~~l~egi~~ti~wyk~ 334 (356)
T d1rkxa_ 313 LGWHPRWNLNTTLEYIVGWHKN 334 (356)
T ss_dssp HCCCCCCCHHHHHHHHHHHHHH
T ss_pred HCCCcCCCHHHHHHHHHHHHHH
Confidence 9999 78999999999999987
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=4.8e-39 Score=284.04 Aligned_cols=301 Identities=13% Similarity=0.106 Sum_probs=218.7
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC--ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC--ccEEE
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN--DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG--CDGVC 86 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vi 86 (328)
||||||||||||++|+++|+++|++|+++++-.. ....+..+. ..++++++.+|++|.+.+.+++++ +|+||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~----~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vi 77 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS----SLGNFEFVHGDIRNKNDVTRLITKYMPDSCF 77 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH----TTCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh----ccCCcEEEEcccCCHHHHHHHHHhcCCceEE
Confidence 6999999999999999999999999999986322 222222221 235799999999999999999874 69999
Q ss_pred EccCCCCCCC-CCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCC------------CccccCCC
Q 020266 87 HTASPFYHDA-KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTP------------DVVVDETW 153 (328)
Q Consensus 87 h~a~~~~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~------------~~~~~E~~ 153 (328)
|+|+...... .......+++|+.||.+|+++|.+. +++++|++||++++++....... .....+..
T Consensus 78 h~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T d1orra_ 78 HLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDEST 156 (338)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTS
T ss_pred eecccccccccccChHHHHHHHHHHHHHHHHhhhcc-cccccccccccccccccccccccccccccccccccccCcccCC
Confidence 9999854321 2223478899999999999999998 77777777776777754321100 01111222
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHh-----CCC--CC-
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIK-----GAQ--TY- 223 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~-----~~~--~~- 223 (328)
+.. +.+.|+.+|...|.+...+...++....++|++++|++...... ..+..++..++. +++ .+
T Consensus 157 ~~~------~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 230 (338)
T d1orra_ 157 QLD------FHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISG 230 (338)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEES
T ss_pred ccc------cccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeC
Confidence 222 34679999999999999999999999999999999987643322 123334444332 222 22
Q ss_pred -CCCCccceeHHHHHHHHHHhhcCCCC--CCcEEEe---cCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceecchH
Q 020266 224 -PNVTFGWVNVKDVANAHIQAFEVPSA--NGRYCLV---ERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKE 297 (328)
Q Consensus 224 -~~~~~~~v~v~D~a~~~~~~~~~~~~--~g~~~~~---~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (328)
|.+.++|+|++|++++++.+++++.. +++|++. +..+++.|+++.+.+..+...........+.....+..|++
T Consensus 231 ~g~~~r~~~~v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 310 (338)
T d1orra_ 231 NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIK 310 (338)
T ss_dssp SSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCH
T ss_pred CCceeEeeecccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCCCCCcCeeeECHH
Confidence 46789999999999999999986432 3478874 36789999999999998743221222222333456778999
Q ss_pred HH-HhcCCc-cccHHHHHHHHHHHHHH
Q 020266 298 KV-KNLGIE-FIPVEVSLKETIESLKE 322 (328)
Q Consensus 298 k~-~~lg~~-~~~~~~~l~~~~~~~~~ 322 (328)
|+ +.|||+ .++++++++++++|++.
T Consensus 311 k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 311 KITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp HHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 99 889999 78999999999999975
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=4.6e-36 Score=258.18 Aligned_cols=267 Identities=12% Similarity=0.025 Sum_probs=205.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 87 (328)
|||||||||||||++|+++|.++||+|++++|+. +|++|++.+.++++ ++|+|||
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~-----------------------~D~~d~~~~~~~l~~~~~d~vih 58 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD-----------------------LDITNVLAVNKFFNEKKPNVVIN 58 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-----------------------CCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh-----------------------ccCCCHHHHHHHHHHcCCCEEEe
Confidence 6799999999999999999999999999998853 48889888888887 6799999
Q ss_pred ccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 88 TASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 88 ~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
+|+.... ............|+..+..+.+.+... . ..+++.||.. +++. ....+.+|.+++.+. +.
T Consensus 59 ~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~-~~~~~~ss~~-v~~~----~~~~~~~e~~~~~~~------~~ 125 (281)
T d1vl0a_ 59 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-G-AEIVQISTDY-VFDG----EAKEPITEFDEVNPQ------SA 125 (281)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-T-CEEEEEEEGG-GSCS----CCSSCBCTTSCCCCC------SH
T ss_pred eccccccccccccchhhcccccccccccccccccc-c-ccccccccce-eeec----cccccccccccccch------hh
Confidence 9987442 112233466778999999999988876 3 4678888865 4432 245667888777664 66
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHhh
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~v~D~a~~~~~~~ 244 (328)
|+.+|..+|.+++. ++.+++++||+++|||+.+ +...++..+..+.+ ..+++.++++|++|+++++..++
T Consensus 126 ~~~~k~~~e~~~~~----~~~~~~i~R~~~vyG~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~ 197 (281)
T d1vl0a_ 126 YGKTKLEGENFVKA----LNPKYYIVRTAWLYGDGNN----FVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVI 197 (281)
T ss_dssp HHHHHHHHHHHHHH----HCSSEEEEEECSEESSSSC----HHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHH----hCCCccccceeEEeCCCcc----cccchhhhhccCCceeecCCceeccchhhhhhhhhhhhh
Confidence 99999999988755 4789999999999999743 35566667777763 45788999999999999999999
Q ss_pred cCCCCCCcEEEec-CccCHHHHHHHHHHhCCCCC----CCCCC-CCCCCCCCceecchHHH-HhcCCccccHHHHHHHHH
Q 020266 245 EVPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQ----LPEKC-ADDKPHVPTYQVLKEKV-KNLGIEFIPVEVSLKETI 317 (328)
Q Consensus 245 ~~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~k~-~~lg~~~~~~~~~l~~~~ 317 (328)
++. ..|.||+++ +.+|+.|+++.+++.++... ++... ...........+|++|+ +.+||++.+++++|++++
T Consensus 198 ~~~-~~g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~~~~~~l~~~l 276 (281)
T d1vl0a_ 198 DEK-NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITREWKESLKEYI 276 (281)
T ss_dssp HHT-CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHHH
T ss_pred hhc-ccCceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 876 457888764 89999999999999987431 11110 00000111234799999 889999669999999999
Q ss_pred HHHH
Q 020266 318 ESLK 321 (328)
Q Consensus 318 ~~~~ 321 (328)
++++
T Consensus 277 ~~l~ 280 (281)
T d1vl0a_ 277 DLLQ 280 (281)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9985
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-33 Score=245.12 Aligned_cols=289 Identities=18% Similarity=0.137 Sum_probs=187.0
Q ss_pred EEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEE-EccCCCcCchHHhhCCccEEEEcc
Q 020266 12 VCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLF-KANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|||||||||||++|+++|+++|+ +|+++++-...... ..+... .-.... ..|+.+.......+..+++|+|+|
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a 76 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-VNLVDL----NIADYMDKEDFLIQIMAGEEFGDVEAIFHEG 76 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG-HHHHTS----CCSEEEEHHHHHHHHHTTCCCSSCCEEEECC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchh-hccccc----chhhhccchHHHHHHhhhhcccchhhhhhhc
Confidence 89999999999999999999995 79888753322211 111110 001111 111111111111223679999999
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhh
Q 020266 90 SPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPL 169 (328)
Q Consensus 90 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 169 (328)
+....... +.......|+.++.+++++++.. +++ +|+.||..++++.. .....|+.+..| .+.|+.
T Consensus 77 a~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~i~-~v~~ss~~~~~~~~-----~~~~~~~~~~~~------~~~Y~~ 142 (307)
T d1eq2a_ 77 ACSSTTEW-DGKYMMDNNYQYSKELLHYCLER-EIP-FLYASSAATYGGRT-----SDFIESREYEKP------LNVYGY 142 (307)
T ss_dssp SCCCTTCC-CHHHHHHHTHHHHHHHHHHHHHH-TCC-EEEEEEGGGGTTCC-----SCBCSSGGGCCC------SSHHHH
T ss_pred cccccccc-ccccccccccccccccccccccc-ccc-cccccccccccccc-----cccccccccccc------cccccc
Confidence 86544433 33467788899999999999987 664 67777766665432 223333333333 467999
Q ss_pred hhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCC--cc-hHHHHHHHHhCCC--C-C--CCCCccceeHHHHHHHHH
Q 020266 170 SKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTL--NT-SAAAVLSLIKGAQ--T-Y--PNVTFGWVNVKDVANAHI 241 (328)
Q Consensus 170 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~-~~~~~~~~~~~~~--~-~--~~~~~~~v~v~D~a~~~~ 241 (328)
+|..+|.+++.++++++++++++||+++|||...... .. ...++.++..++. . . +.+.++|+|++|++.++.
T Consensus 143 ~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~ 222 (307)
T d1eq2a_ 143 SKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNL 222 (307)
T ss_dssp HHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHH
T ss_pred ccchhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHH
Confidence 9999999999999999999999999999999764321 12 3344555555552 1 2 356789999999999999
Q ss_pred HhhcCCCCCCcEEEe-cCccCHHHHHHHHHHhCCCCCCCCCC---CCCCCCCCceecchHHH-HhcCCc-cccHHHHHHH
Q 020266 242 QAFEVPSANGRYCLV-ERVSHYSEIVNIIRELYPAFQLPEKC---ADDKPHVPTYQVLKEKV-KNLGIE-FIPVEVSLKE 315 (328)
Q Consensus 242 ~~~~~~~~~g~~~~~-~~~~~~~el~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~k~-~~lg~~-~~~~~~~l~~ 315 (328)
.++.++ ..+.||++ ++..+++|+++.+.+..+...+.... ............|++|+ +.+||+ .++++|+|++
T Consensus 223 ~~~~~~-~~~~~~~~~~~~~si~~i~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~ 301 (307)
T d1eq2a_ 223 WFLENG-VSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTE 301 (307)
T ss_dssp HHHHHC-CCEEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHHTTCCCCCCCHHHHHHH
T ss_pred HHhhhc-cccccccccccchhHHHHHHHHHHhcCCCCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCCCHHHHHHH
Confidence 999875 45688886 58999999999998876643322111 11111122344689999 888999 8999999999
Q ss_pred HHHHH
Q 020266 316 TIESL 320 (328)
Q Consensus 316 ~~~~~ 320 (328)
+++|+
T Consensus 302 ~i~w~ 306 (307)
T d1eq2a_ 302 YMAWL 306 (307)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99986
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-32 Score=238.87 Aligned_cols=274 Identities=14% Similarity=0.083 Sum_probs=193.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 87 (328)
|||||||||||||++|++.|.++|+.| ++.+.... +.+|++|++.+.++++ ++|+|||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~-------------------~~~Dl~~~~~~~~~i~~~~~D~Vih 60 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKE-------------------FCGDFSNPKGVAETVRKLRPDVIVN 60 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSS-------------------SCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCcc-------------------ccCcCCCHHHHHHHHHHcCCCEEEE
Confidence 579999999999999999999998654 44443221 2379999999998887 5799999
Q ss_pred ccCCCCC-CCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 88 TASPFYH-DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 88 ~a~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
+||.... .........+++|+.++.+|+++|++. + .+++++||.+.+++ ....+.+|+.++.|. +.
T Consensus 61 ~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~~~ss~~~~~~-----~~~~~~~E~~~~~p~------~~ 127 (298)
T d1n2sa_ 61 AAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-G-AWVVHYSTDYVFPG-----TGDIPWQETDATSPL------NV 127 (298)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-T-CEEEEEEEGGGSCC-----CTTCCBCTTSCCCCS------SH
T ss_pred ecccccccccccCccccccccccccccchhhhhcc-c-cccccccccccccC-----CCCCCCccccccCCC------ch
Confidence 9997432 223344478899999999999999987 5 46899999765542 245678898887764 67
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC--CCCCCCccceeHHHHHHHHHHhh
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ--TYPNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~v~D~a~~~~~~~ 244 (328)
|+.+|..+|..+.... ....++|++..+++... .....+...+..+.+ ..+.+.++++|++|+++++..++
T Consensus 128 y~~~k~~~e~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i 200 (298)
T d1n2sa_ 128 YGKTKLAGEKALQDNC----PKHLIFRTSWVYAGKGN---NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAI 200 (298)
T ss_dssp HHHHHHHHHHHHHHHC----SSEEEEEECSEECSSSC---CHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhHHhhh----cccccccccceeeccCC---ccchhhhhhhcccceeecccceeecccccchHHHHHHHHH
Confidence 9999999999887653 34556666666543322 112223333444443 33677889999999999988776
Q ss_pred c----CCCCCCcEEEec-CccCHHHHHHHHHHhCCCCCCCCCC------CCC---CC--CCCceecchHHH-HhcCCccc
Q 020266 245 E----VPSANGRYCLVE-RVSHYSEIVNIIRELYPAFQLPEKC------ADD---KP--HVPTYQVLKEKV-KNLGIEFI 307 (328)
Q Consensus 245 ~----~~~~~g~~~~~~-~~~~~~el~~~i~~~~~~~~~~~~~------~~~---~~--~~~~~~~~~~k~-~~lg~~~~ 307 (328)
. .+...++||+++ +..+..++++.+.+..+........ ... .+ ......+|++|+ +.+||+++
T Consensus 201 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~ 280 (298)
T d1n2sa_ 201 RVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP 280 (298)
T ss_dssp HHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC
T ss_pred hhhhccccccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCC
Confidence 5 344466999986 8899999999887765321111100 000 00 011235799999 88999977
Q ss_pred cHHHHHHHHHHHHHHc
Q 020266 308 PVEVSLKETIESLKEK 323 (328)
Q Consensus 308 ~~~~~l~~~~~~~~~~ 323 (328)
+++++|+++++++...
T Consensus 281 ~~~~gl~~~i~~~~~~ 296 (298)
T d1n2sa_ 281 QWELGVKRMLTEMFTT 296 (298)
T ss_dssp BHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHhh
Confidence 9999999999998754
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.4e-31 Score=219.51 Aligned_cols=211 Identities=16% Similarity=0.059 Sum_probs=159.0
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCc
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGC 82 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (328)
-.|++|+|||||||||||++|+++|+++| ++|+++.|++...... ....++...+|+.+.+++.++++++
T Consensus 10 ~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~--------~~~~i~~~~~D~~~~~~~~~~~~~~ 81 (232)
T d2bkaa1 10 FRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE--------AYKNVNQEVVDFEKLDDYASAFQGH 81 (232)
T ss_dssp HHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG--------GGGGCEEEECCGGGGGGGGGGGSSC
T ss_pred hCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc--------ccceeeeeeeccccccccccccccc
Confidence 35678899999999999999999999998 4899999976543321 1246788889999999999999999
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQ 162 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 162 (328)
|+|||+++..... .......++|+.++.+++++|.+. ++++|||+||.++.. .
T Consensus 82 d~vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~-~v~~fi~~Ss~~~~~-~----------------------- 134 (232)
T d2bkaa1 82 DVGFCCLGTTRGK--AGAEGFVRVDRDYVLKSAELAKAG-GCKHFNLLSSKGADK-S----------------------- 134 (232)
T ss_dssp SEEEECCCCCHHH--HHHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCT-T-----------------------
T ss_pred ccccccccccccc--cchhhhhhhcccccceeeeccccc-CccccccCCcccccc-C-----------------------
Confidence 9999999864321 123367889999999999999998 899999999975322 1
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCc-cEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHH
Q 020266 163 SELWYPLSKTLAEDAAWKFAKEKSI-DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHI 241 (328)
Q Consensus 163 ~~~~Y~~sK~~~E~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~ 241 (328)
+.+.|+.+|..+|..+.. .++ .++|+||+.+||+.... ..............+ .+......|+++|+|++++
T Consensus 135 ~~~~Y~~~K~~~E~~l~~----~~~~~~~IlRP~~i~G~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~I~~~dvA~a~i 207 (232)
T d2bkaa1 135 SNFLYLQVKGEVEAKVEE----LKFDRYSVFRPGVLLCDRQES--RPGEWLVRKFFGSLP-DSWASGHSVPVVTVVRAML 207 (232)
T ss_dssp CSSHHHHHHHHHHHHHHT----TCCSEEEEEECCEEECTTGGG--SHHHHHHHHHHCSCC-TTGGGGTEEEHHHHHHHHH
T ss_pred ccchhHHHHHHhhhcccc----ccccceEEecCceeecCCCcC--cHHHHHHHHHhhccC-CcccCCCeEEHHHHHHHHH
Confidence 125599999999998855 355 48999999999986442 112222233333221 1223345799999999999
Q ss_pred HhhcCCCCCCcEEEec
Q 020266 242 QAFEVPSANGRYCLVE 257 (328)
Q Consensus 242 ~~~~~~~~~g~~~~~~ 257 (328)
.++.++...+.+++.+
T Consensus 208 ~~~~~~~~~~~~i~~~ 223 (232)
T d2bkaa1 208 NNVVRPRDKQMELLEN 223 (232)
T ss_dssp HHHTSCCCSSEEEEEH
T ss_pred HHHhcCccCCeEEEcH
Confidence 9998887777777764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8.2e-30 Score=208.72 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=154.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|.||||+||||||+||++++++|+++||+|+++.|++++.... ...+++++.+|++|++++.++++++|+||
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~gD~~d~~~l~~al~~~d~vi 72 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVAGQDAVI 72 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc--------cccccccccccccchhhHHHHhcCCCEEE
Confidence 5688999999999999999999999999999999987654321 23578999999999999999999999999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
|++|..... ...+++..++.++++++++. +++|||++||.+.++... . .+ + ....
T Consensus 73 ~~~g~~~~~------~~~~~~~~~~~~l~~aa~~~-~v~r~i~~ss~~~~~~~~-----~------~~--~-----~~~~ 127 (205)
T d1hdoa_ 73 VLLGTRNDL------SPTTVMSEGARNIVAAMKAH-GVDKVVACTSAFLLWDPT-----K------VP--P-----RLQA 127 (205)
T ss_dssp ECCCCTTCC------SCCCHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCTT-----C------SC--G-----GGHH
T ss_pred EEeccCCch------hhhhhhHHHHHHHHHHHHhc-CCCeEEEEeeeeccCCCc-----c------cc--c-----cccc
Confidence 999864322 33457889999999999998 899999999976444211 0 00 0 1234
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcC
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~ 246 (328)
|...|..+|++++ +.+++++++||+.+++......... ...+.....+++++|+|++++.++++
T Consensus 128 ~~~~~~~~e~~l~----~~~~~~tiirp~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~DvA~~~~~~l~~ 191 (205)
T d1hdoa_ 128 VTDDHIRMHKVLR----ESGLKYVAVMPPHIGDQPLTGAYTV------------TLDGRGPSRVISKHDLGHFMLRCLTT 191 (205)
T ss_dssp HHHHHHHHHHHHH----HTCSEEEEECCSEEECCCCCSCCEE------------ESSSCSSCSEEEHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHH----hcCCceEEEecceecCCCCcccEEE------------eeCCCCCCCcCCHHHHHHHHHHHhCC
Confidence 8889999998774 4689999999999986432211100 11245667899999999999999998
Q ss_pred CCCCC-cEEEe
Q 020266 247 PSANG-RYCLV 256 (328)
Q Consensus 247 ~~~~g-~~~~~ 256 (328)
+...| .+.++
T Consensus 192 ~~~~g~~~~~s 202 (205)
T d1hdoa_ 192 DEYDGHSTYPS 202 (205)
T ss_dssp STTTTCEEEEE
T ss_pred CCCCCEEEecC
Confidence 87666 45554
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.95 E-value=1.8e-27 Score=199.54 Aligned_cols=228 Identities=16% Similarity=0.114 Sum_probs=158.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCe--EEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYT--VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.|++|||||||||||++++++|+++|++ |+.+.|++++... ...+++++.+|+++++++.++++++|+|
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~---------~~~~~~~~~~d~~~~~~~~~~~~~~d~v 72 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK---------IGGEADVFIGDITDADSINPAFQGIDAL 72 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHH---------TTCCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHh---------ccCCcEEEEeeeccccccccccccceee
Confidence 4789999999999999999999999976 5556676544322 1246789999999999999999999999
Q ss_pred EEccCCCCCCC--------------CCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 86 CHTASPFYHDA--------------KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 86 ih~a~~~~~~~--------------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
||+|+...... .........+|+.++.++++.+... ..+++.+.|+..... .. .+...
T Consensus 73 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~-~~------~~~~~ 144 (252)
T d2q46a1 73 VILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSMGGTN-PD------HPLNK 144 (252)
T ss_dssp EECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEEETTTTC-TT------CGGGG
T ss_pred EEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc-cccccccccccccCC-CC------ccccc
Confidence 99997522100 1112355678899999999999887 777888888854322 10 00000
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccce
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (328)
.....|...+. ....+..+.+++++++||+.+|||...... .+ ............+++
T Consensus 145 ----------~~~~~~~~~~~----~~~~~~~~~~~~~~ilRp~~v~g~~~~~~~-~~-------~~~~~~~~~~~~~~i 202 (252)
T d2q46a1 145 ----------LGNGNILVWKR----KAEQYLADSGTPYTIIRAGGLLDKEGGVRE-LL-------VGKDDELLQTDTKTV 202 (252)
T ss_dssp ----------GGGCCHHHHHH----HHHHHHHHSSSCEEEEEECEEECSCTTSSC-EE-------EESTTGGGGSSCCEE
T ss_pred ----------ccccchhhhhh----hhhhhhhcccccceeecceEEECCCcchhh-hh-------hccCcccccCCCCeE
Confidence 01122444443 444455667999999999999999743221 00 011112234556799
Q ss_pred eHHHHHHHHHHhhcCCCCCC-cEEEec----CccCHHHHHHHHHHhCC
Q 020266 232 NVKDVANAHIQAFEVPSANG-RYCLVE----RVSHYSEIVNIIRELYP 274 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~~~~g-~~~~~~----~~~~~~el~~~i~~~~~ 274 (328)
|++|+|++++.++++++..| +||+++ ...++.|+.+++.+..+
T Consensus 203 ~~~Dva~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~~ 250 (252)
T d2q46a1 203 PRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250 (252)
T ss_dssp EHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCCC
T ss_pred EHHHHHHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHHHHHHh
Confidence 99999999999999887766 899874 24567788877766543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.95 E-value=1.9e-28 Score=213.01 Aligned_cols=232 Identities=16% Similarity=0.135 Sum_probs=160.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
.+||||||||||||++|+++|+++||+|+++.|+..................+++++.+|++|.+.+.+.+.+++.++|+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~ 82 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 82 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence 56799999999999999999999999999999976543321111101112357999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhh
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYP 168 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 168 (328)
++... ...|..++.++++++.+. +..++++.||.+ .+.. .+..+.. +...|.
T Consensus 83 ~~~~~----------~~~~~~~~~~~l~~a~~~-~~~~~v~~Ss~g-~~~~----------~~~~~~~------~~~~~~ 134 (312)
T d1qyda_ 83 LAGGV----------LSHHILEQLKLVEAIKEA-GNIKRFLPSEFG-MDPD----------IMEHALQ------PGSITF 134 (312)
T ss_dssp CCCSS----------SSTTTTTHHHHHHHHHHS-CCCSEEECSCCS-SCTT----------SCCCCCS------STTHHH
T ss_pred hhhcc----------cccchhhhhHHHHHHHHh-cCCcEEEEeecc-ccCC----------Ccccccc------hhhhhh
Confidence 87522 223555677888888887 556788888853 2211 1111111 123355
Q ss_pred hhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC--CCC--CCCCccceeHHHHHHHHHHhh
Q 020266 169 LSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTY--PNVTFGWVNVKDVANAHIQAF 244 (328)
Q Consensus 169 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~v~v~D~a~~~~~~~ 244 (328)
.+|..++ .+....+++++++||+.+||+.......... .....+. ..+ +++.++|+|++|+|++++.++
T Consensus 135 ~~~~~~~----~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l 207 (312)
T d1qyda_ 135 IDKRKVR----RAIEAASIPYTYVSSNMFAGYFAGSLAQLDG---HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSI 207 (312)
T ss_dssp HHHHHHH----HHHHHTTCCBCEEECCEEHHHHTTTSSCTTC---CSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHT
T ss_pred HHHHHHH----HhhcccccceEEeccceeecCCccchhhHHH---HhhhcccccccccccccccceeeHHHHHHHHHHHh
Confidence 5555554 4556678999999999999975432211110 0011122 222 578899999999999999999
Q ss_pred cCCCCCC--cEEEec-CccCHHHHHHHHHHhCCC
Q 020266 245 EVPSANG--RYCLVE-RVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 245 ~~~~~~g--~~~~~~-~~~~~~el~~~i~~~~~~ 275 (328)
.++...+ .|++++ +.+|++|+++.+++.++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~ 241 (312)
T d1qyda_ 208 DDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQ 241 (312)
T ss_dssp TCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred cCccccCceEEEeCCCcCCCHHHHHHHHHHHHCC
Confidence 9876544 455654 789999999999998874
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.93 E-value=1.7e-27 Score=206.02 Aligned_cols=227 Identities=15% Similarity=0.179 Sum_probs=158.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhh-ccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
.|||||||||||||++++++|+++||+|++++|+............ ......+++++.+|+.+.....+.+++++.|+|
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~ 82 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 82 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence 5789999999999999999999999999999997665433221110 001135689999999999999999999999999
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchh
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWY 167 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 167 (328)
+++.. +..++.++++++... +.+++++.||.+.... +.....+ ...+
T Consensus 83 ~~~~~--------------~~~~~~~~~~a~~~~-~~~~~~~~s~~~~~~~------------~~~~~~~------~~~~ 129 (307)
T d1qyca_ 83 TVGSL--------------QIESQVNIIKAIKEV-GTVKRFFPSEFGNDVD------------NVHAVEP------AKSV 129 (307)
T ss_dssp CCCGG--------------GSGGGHHHHHHHHHH-CCCSEEECSCCSSCTT------------SCCCCTT------HHHH
T ss_pred ccccc--------------ccchhhHHHHHHHHh-ccccceeeeccccccc------------ccccccc------cccc
Confidence 98642 222345677888776 6677888888432211 1111111 1224
Q ss_pred hhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC----CCCCCCccceeHHHHHHHHHHh
Q 020266 168 PLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ----TYPNVTFGWVNVKDVANAHIQA 243 (328)
Q Consensus 168 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~v~D~a~~~~~~ 243 (328)
...+...+..+ .+.+++++++||+.+||+...... ........+.. ..+++.++|+|++|+|++++.+
T Consensus 130 ~~~~~~~~~~~----~~~~~~~~i~r~~~v~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~ 201 (307)
T d1qyca_ 130 FEVKAKVRRAI----EAEGIPYTYVSSNCFAGYFLRSLA----QAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKA 201 (307)
T ss_dssp HHHHHHHHHHH----HHHTCCBEEEECCEEHHHHTTTTT----CTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTT
T ss_pred ccccccccchh----hccCCCceecccceecCCCccchh----hhhhhhhhcccceeeecccccccCCcHHHHHHHHHHH
Confidence 55555555444 456899999999999998644321 11112222221 2257889999999999999999
Q ss_pred hcCCCCCC--cEEEec-CccCHHHHHHHHHHhCCCC
Q 020266 244 FEVPSANG--RYCLVE-RVSHYSEIVNIIRELYPAF 276 (328)
Q Consensus 244 ~~~~~~~g--~~~~~~-~~~~~~el~~~i~~~~~~~ 276 (328)
+.++...+ .|++++ +.+|+.|+++.+.+++|..
T Consensus 202 l~~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~ 237 (307)
T d1qyca_ 202 VDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKT 237 (307)
T ss_dssp SSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSC
T ss_pred hcChhhcCceeEEeCCCCccCHHHHHHHHHHHHCCC
Confidence 99876554 456654 8899999999999999853
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=1.2e-26 Score=190.85 Aligned_cols=193 Identities=18% Similarity=0.162 Sum_probs=133.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHH-hhCCccEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-IVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~v 85 (328)
.|+|||||||||||++|+++|+++|+ +|+++.|++... .+++.....|+ .++.. +...+|+|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~------------~~~~~~~~~d~---~~~~~~~~~~~d~v 66 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------------HPRLDNPVGPL---AELLPQLDGSIDTA 66 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------------CTTEECCBSCH---HHHGGGCCSCCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh------------cccccccccch---hhhhhccccchhee
Confidence 48999999999999999999999997 566666654321 12444433443 22332 33468999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL 165 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 165 (328)
||++|........ .....+.|+.++.+++++|++. +++++|++||.++... ..+
T Consensus 67 i~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~-~v~~~i~~Ss~~~~~~------------------------~~~ 120 (212)
T d2a35a1 67 FCCLGTTIKEAGS-EEAFRAVDFDLPLAVGKRALEM-GARHYLVVSALGADAK------------------------SSI 120 (212)
T ss_dssp EECCCCCHHHHSS-HHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTT------------------------CSS
T ss_pred eeeeeeecccccc-ccccccchhhhhhhcccccccc-cccccccccccccccc------------------------ccc
Confidence 9999864322222 2377889999999999999998 9999999999653321 125
Q ss_pred hhhhhhHHHHHHHHHHHHhcCc-cEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC--CCCCccceeHHHHHHHHHH
Q 020266 166 WYPLSKTLAEDAAWKFAKEKSI-DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY--PNVTFGWVNVKDVANAHIQ 242 (328)
Q Consensus 166 ~Y~~sK~~~E~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~D~a~~~~~ 242 (328)
.|..+|..+|..+++ .+. +++|+||+.||||..... ....+ ..+.. ....+..||++|+|++++.
T Consensus 121 ~y~~~K~~~E~~l~~----~~~~~~~I~Rp~~v~G~~~~~~---~~~~~-----~~~~~~~~~~~~~~i~v~DvA~ai~~ 188 (212)
T d2a35a1 121 FYNRVKGELEQALQE----QGWPQLTIARPSLLFGPREEFR---LAEIL-----AAPIARILPGKYHGIEACDLARALWR 188 (212)
T ss_dssp HHHHHHHHHHHHHTT----SCCSEEEEEECCSEESTTSCEE---GGGGT-----TCCCC----CHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhhhccc----cccccceeeCCcceeCCccccc---HHHHH-----HHHHhhccCCCCcEEEHHHHHHHHHH
Confidence 599999999998753 355 599999999999975421 11111 11111 1233457999999999999
Q ss_pred hhcCCCCCCcEEE
Q 020266 243 AFEVPSANGRYCL 255 (328)
Q Consensus 243 ~~~~~~~~g~~~~ 255 (328)
++.++. .|.+++
T Consensus 189 ~~~~~~-~g~~~~ 200 (212)
T d2a35a1 189 LALEEG-KGVRFV 200 (212)
T ss_dssp HHTCCC-SEEEEE
T ss_pred HHcCCC-CCCEEE
Confidence 998764 454443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.93 E-value=5.1e-25 Score=185.01 Aligned_cols=225 Identities=16% Similarity=0.124 Sum_probs=166.1
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
+.++++|++|||||++.||+++++.|+++|++|++.+|+.++.+.+...+... ..++.++.+|++|++++.++++
T Consensus 5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 5 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999877766655554332 3578999999999998887775
Q ss_pred ----CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ----~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|++||||+... ....+.+...+++|+.++.++.+++.+. .+.+++|++||.++..+.+
T Consensus 83 ~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~-------- 154 (251)
T d2c07a1 83 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNV-------- 154 (251)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT--------
T ss_pred HhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCC--------
Confidence 6899999998632 2234567788999999999998876543 1457899999987765321
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.||.+.+.+++.++.+. |+++++|.||.+-.+..... ............|
T Consensus 155 --------------~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~---~~~~~~~~~~~~p---- 213 (251)
T d2c07a1 155 --------------GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI---SEQIKKNIISNIP---- 213 (251)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C---CHHHHHHHHTTCT----
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccccc---CHHHHHHHHhcCC----
Confidence 12459999999999999998864 89999999999988754322 2233333443322
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCCcEEEecCcc
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~ 260 (328)
...+..++|+|.++++++.... ..|....+++.+
T Consensus 214 -l~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 249 (251)
T d2c07a1 214 -AGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGGL 249 (251)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCCc
Confidence 2247799999999999986432 367554444333
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=7e-25 Score=184.46 Aligned_cols=227 Identities=15% Similarity=0.099 Sum_probs=167.1
Q ss_pred CcccccC--CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 1 MSSVAAA--AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 1 ~~~~~~~--~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
|-.++.| ++|+++||||++.||+++++.|+++|++|++.+|+.++.+.+...+... ..++.++++|++++++++++
T Consensus 1 m~~~d~m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~--g~~~~~~~~Dvs~~~~~~~~ 78 (255)
T d1fmca_ 1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSAL 78 (255)
T ss_dssp CCCGGGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEccCCCHHHHHHH
Confidence 4444444 6999999999999999999999999999999999877766655554433 35788999999999988776
Q ss_pred hC-------CccEEEEccCCCCC----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCC
Q 020266 79 VD-------GCDGVCHTASPFYH----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 79 ~~-------~~d~vih~a~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
++ ++|++|||||.... ...+.+...+++|+.++.++.+++.+. .+..++|++||.++..+.+
T Consensus 79 ~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~---- 154 (255)
T d1fmca_ 79 ADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI---- 154 (255)
T ss_dssp HHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT----
T ss_pred HHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhcccc----
Confidence 65 68999999986322 234457788999999999998876553 1345799999976554211
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
....|+.+|.+.+.+++.++.+. |+++++|.||.+..+...... ............|
T Consensus 155 ------------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~--~~e~~~~~~~~~p 214 (255)
T d1fmca_ 155 ------------------NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQHTP 214 (255)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC--CHHHHHHHHHTCS
T ss_pred ------------------ccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccC--CHHHHHHHHhcCC
Confidence 23569999999999999998864 899999999999876322211 1233444444332
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCC--CCCCcE-EEecC
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVP--SANGRY-CLVER 258 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~-~~~~~ 258 (328)
...+..++|+|.++++++... ...|.. .+.|+
T Consensus 215 -----l~R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG 249 (255)
T d1fmca_ 215 -----IRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249 (255)
T ss_dssp -----SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -----CCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence 224678999999999998643 246744 44444
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.92 E-value=6.7e-25 Score=184.91 Aligned_cols=224 Identities=14% Similarity=0.134 Sum_probs=164.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||++.||+++++.|+++|++|++.+|+.++.+.....+.......++..+++|++|+++++++++
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999887766655544444445678999999999999887765
Q ss_pred -CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++|||||... ....+.|...+++|+.++.++.+++.+. .+.+++|++||.++..+.+
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~---------- 151 (258)
T d1iy8a_ 82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIG---------- 151 (258)
T ss_dssp SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCS----------
T ss_pred CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCCC----------
Confidence 6899999998532 1234567789999999999999877543 1456899999987655321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC-----CcchHHHHHHHHhCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT-----LNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~ 222 (328)
....|+.+|.+.+.+++.++.+. |+++++|.||.+..|..... ...............|
T Consensus 152 ------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p- 218 (258)
T d1iy8a_ 152 ------------NQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNP- 218 (258)
T ss_dssp ------------SBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCT-
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCC-
Confidence 23569999999999999998864 89999999999977531100 0001122233333221
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
...+..++|+|.++++++... ...|.-..++
T Consensus 219 ----l~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VD 251 (258)
T d1iy8a_ 219 ----SKRYGEAPEIAAVVAFLLSDDASYVNATVVPID 251 (258)
T ss_dssp ----TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred ----CCCCcCHHHHHHHHHHHhCchhcCCcCceEEcC
Confidence 234779999999999998643 2366444444
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.92 E-value=1.4e-24 Score=181.01 Aligned_cols=211 Identities=17% Similarity=0.151 Sum_probs=158.9
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|++++.+.+...+ ..++.++++|++|+++++++++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999876665544433 2468889999999998887775
Q ss_pred --CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|++|||||... ....+.|.+.+++|+.++.++.+++.+. .+.+++|++||.++..+.+
T Consensus 78 ~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~---------- 147 (244)
T d1nffa_ 78 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTV---------- 147 (244)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred hCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccc----------
Confidence 6899999998732 2234557789999999999998876543 1446899999987654211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.++ |++++.|-||.+..|...... ........
T Consensus 148 ------------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~-------------~~~~~~pl 202 (244)
T d1nffa_ 148 ------------ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVP-------------EDIFQTAL 202 (244)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSC-------------TTCSCCSS
T ss_pred ------------cccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhh-------------HHHHhccc
Confidence 12459999999999999999864 899999999999877432110 00001122
Q ss_pred ccceeHHHHHHHHHHhhcCC--CCCCcEEEe
Q 020266 228 FGWVNVKDVANAHIQAFEVP--SANGRYCLV 256 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~ 256 (328)
..+..++|+|+++++++... ...|....+
T Consensus 203 ~R~~~p~diA~~v~fL~s~~s~~itG~~i~v 233 (244)
T d1nffa_ 203 GRAAEPVEVSNLVVYLASDESSYSTGAEFVV 233 (244)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred cCCCCHHHHHHHHHHHhChhhCCCcCCEEEE
Confidence 34789999999999998643 246744333
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.92 E-value=3e-24 Score=182.30 Aligned_cols=227 Identities=18% Similarity=0.222 Sum_probs=164.5
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
+.+++|++|||||++.||+++++.|+++|++|++.+|+.++.+.+...+ .....+.++.+|++|+++++++++
T Consensus 2 nrL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l---~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (268)
T d2bgka1 2 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI---GSPDVISFVHCDVTKDEDVRNLVDTTIA 78 (268)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CCTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---cCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999876655544433 233468889999999998888775
Q ss_pred ---CccEEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 ---GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
.+|++|||||.... ...+.++..+++|+.++.++.+++.+.+ +..++|++||+++..+.. .
T Consensus 79 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~----~-- 152 (268)
T d2bgka1 79 KHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE----G-- 152 (268)
T ss_dssp HHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT----T--
T ss_pred HcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccccc----c--
Confidence 68999999986321 1223566789999999999988775531 446899999976554211 0
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.+|.+.+.+++.++.++ |+++.+|.||.+-+|.....................
T Consensus 153 ---------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~--- 214 (268)
T d2bgka1 153 ---------------VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA--- 214 (268)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC---
T ss_pred ---------------cccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhcc---
Confidence 11359999999999999998864 899999999999888644333222233333222111
Q ss_pred CCCccceeHHHHHHHHHHhhcCC--CCCCcEEEecC
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVER 258 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~ 258 (328)
.....+..++|+|.++++++... ...|....+++
T Consensus 215 ~~~gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDG 250 (268)
T d2bgka1 215 NLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDG 250 (268)
T ss_dssp SSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ccCCCCcCHHHHHHHHHHHhChhhCCccCceEEECc
Confidence 11223778999999999998643 34675444443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=5.8e-25 Score=183.66 Aligned_cols=216 Identities=16% Similarity=0.196 Sum_probs=161.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||++.||+++++.|+++|++|++.+|++++.+.+...+ ..+...+.+|++|+++++++++
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL-----GANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh-----CCCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 57999999999999999999999999999999999877666554443 2467889999999998877765
Q ss_pred -CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|++|||||... ....+.+...+++|+.++.++.+++.+.+ +.+++|++||.++..+.+
T Consensus 77 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~----------- 145 (243)
T d1q7ba_ 77 GEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNG----------- 145 (243)
T ss_dssp CSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----------
T ss_pred CCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCC-----------
Confidence 6899999998632 23345677889999999999998876541 446899999987665321
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.||.+.+.+++.++.+ +|+++++|.||.+-.+..... ............| ..
T Consensus 146 -----------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~---~~~~~~~~~~~~p-----l~ 206 (243)
T d1q7ba_ 146 -----------GQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRAL---SDDQRAGILAQVP-----AG 206 (243)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHTTCT-----TS
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhh---hhhHHHHHHhcCC-----CC
Confidence 1356999999999999999886 489999999999877632211 1122223333222 23
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCCcEEEec
Q 020266 229 GWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
.+..++|+|.++.+++.... ..|.....+
T Consensus 207 R~~~pedvA~~v~fL~S~~s~~itGq~i~vd 237 (243)
T d1q7ba_ 207 RLGGAQEIANAVAFLASDEAAYITGETLHVN 237 (243)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CCCCHHHHHHHHHHHhCchhcCCcCCeEEEC
Confidence 47799999999999986432 366443333
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.92 E-value=3.4e-25 Score=184.24 Aligned_cols=209 Identities=15% Similarity=0.159 Sum_probs=153.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
++++|++|||||++.||+++++.|+++|++|++.+|+.+..+ ++..+++|++|+++++++++
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-------------~~~~~~~Dv~~~~~v~~~~~~~~~~ 70 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-------------GLFGVEVDVTDSDAVDRAFTAVEEH 70 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc-------------CceEEEEecCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999876543 46778999999998877765
Q ss_pred --CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++|||||... ....+.+...+++|+.++..+.+++.+. .+.+++|++||.++..+.+
T Consensus 71 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~---------- 140 (237)
T d1uzma1 71 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIG---------- 140 (237)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC---------------
T ss_pred cCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCc----------
Confidence 6899999998632 2334567788999999998887765442 2556899999976655311
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.+|.+.+.+++.++.+ +|+++.+|.||.+..+..... .....+..... .| .
T Consensus 141 ------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~----~~~~~~~~~~~--~p--l 200 (237)
T d1uzma1 141 ------------NQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL----DERIQQGALQF--IP--A 200 (237)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS----CHHHHHHHGGG--CT--T
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhcc----CHHHHHHHHhc--CC--C
Confidence 1345999999999999999886 489999999999977632111 11122222221 11 2
Q ss_pred ccceeHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
..+..++|+|.++.+++... ...|.....+
T Consensus 201 ~R~~~pedvA~~v~fL~S~~s~~itG~~i~vd 232 (237)
T d1uzma1 201 KRVGTPAEVAGVVSFLASEDASYISGAVIPVD 232 (237)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CCCcCHHHHHHHHHHHhCchhcCCcCCeEEEC
Confidence 34779999999999998643 2467444444
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.1e-24 Score=180.38 Aligned_cols=217 Identities=19% Similarity=0.132 Sum_probs=161.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Ccc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCD 83 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d 83 (328)
+++|++|||||++.||+++++.|+++|++|++.+|++++.+.+.... .++..+.+|++|+++++++++ ++|
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 67999999999999999999999999999999999876655443322 357889999999999988887 579
Q ss_pred EEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 84 GVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 84 ~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
++||||+... ....+.+...+++|+.++.++.+++.+. .+..++|++||.++..+.+
T Consensus 79 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~-------------- 144 (244)
T d1pr9a_ 79 LLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT-------------- 144 (244)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT--------------
T ss_pred EEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccccccc--------------
Confidence 9999998632 2334567788999999999988876542 2456899999976554211
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccce
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (328)
....|+.+|.+.+.+++.++.++ |+++++|.||.+..|....... -...........| ...+.
T Consensus 145 --------~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~-~~~~~~~~~~~~p-----l~R~~ 210 (244)
T d1pr9a_ 145 --------NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS-DPHKAKTMLNRIP-----LGKFA 210 (244)
T ss_dssp --------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSC-SHHHHHHHHTTCT-----TCSCB
T ss_pred --------chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhcc-ChHHHHHHHhcCC-----CCCCc
Confidence 12459999999999999998864 8999999999998773221111 1123333333322 23478
Q ss_pred eHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 232 NVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
.++|+|.++.+++... ...|.....+
T Consensus 211 ~peevA~~v~fL~S~~a~~itG~~i~vD 238 (244)
T d1pr9a_ 211 EVEHVVNAILFLLSDRSGMTTGSTLPVE 238 (244)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CHHHHHHHHHHHhCchhCCcCCcEEEEC
Confidence 9999999999998643 2466544444
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=6.5e-24 Score=177.12 Aligned_cols=217 Identities=17% Similarity=0.104 Sum_probs=159.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||++.||+++++.|+++|++|++.+|+.++.+..... .+..++.+|++|+++++++++
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA-------VGAHPVVMDVADPASVERGFAEALAHL 75 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-------TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------cCCeEEEEecCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999986655443332 256789999999998887765
Q ss_pred -CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|++|||||... ....+.+...+++|+.++.++.+++.+. .+..+++.+||.+ ..+.+
T Consensus 76 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~-~~~~~----------- 143 (242)
T d1ulsa_ 76 GRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGNL----------- 143 (242)
T ss_dssp SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCCT-----------
T ss_pred CCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecccc-ccCCC-----------
Confidence 6899999998633 2334557789999999999999877654 1445677777743 33211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.+|.+.+.+.+.++.++ |+++++|.||.+-.|..... ............| ..
T Consensus 144 -----------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~---~~~~~~~~~~~~p-----l~ 204 (242)
T d1ulsa_ 144 -----------GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV---PEKVREKAIAATP-----LG 204 (242)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS---CHHHHHHHHHTCT-----TC
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcC---CHHHHHHHHhcCC-----CC
Confidence 12459999999999999998864 79999999999988754322 2233333444322 23
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCCcEEEecCccC
Q 020266 229 GWVNVKDVANAHIQAFEVP--SANGRYCLVERVSH 261 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~~~~ 261 (328)
.+..++|+|.++++++... ...|.....++.++
T Consensus 205 R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 205 RAGKPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (242)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCCCHHHHHHHHHHHhchhhCCCCCcEEEECCCcc
Confidence 4778999999999998643 34675555554444
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.6e-24 Score=181.56 Aligned_cols=219 Identities=18% Similarity=0.195 Sum_probs=161.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|+++..+.+.... ++..++.+|++|+++++++++
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999999999999999999876655544332 467899999999998888775
Q ss_pred --CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++|||||... ....+.++..+++|+.++.++.+++.+.+ +.+++|++||.++..+.+
T Consensus 77 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~~---------- 146 (250)
T d1ydea1 77 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQA---------- 146 (250)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCT----------
T ss_pred cCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCccccccccccccc----------
Confidence 6899999998532 12334577889999999999998876542 226899999987665321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCC---CCCcchHHHHHHHHhCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQ---PTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.+|.+.+.+.+.++.+. |+++++|.||.|-.|... .........+.+.....|
T Consensus 147 ------------~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p--- 211 (250)
T d1ydea1 147 ------------QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQP--- 211 (250)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTST---
T ss_pred ------------CcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCC---
Confidence 13559999999999999998864 899999999998765211 001112233444444322
Q ss_pred CCCccceeHHHHHHHHHHhhcC-CCCCCcEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEV-PSANGRYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~-~~~~g~~~~~~ 257 (328)
...+..++|+|+++++++.. ....|.-..++
T Consensus 212 --l~R~g~p~eva~~v~fL~Sda~~itG~~i~vD 243 (250)
T d1ydea1 212 --LGRMGQPAEVGAAAVFLASEANFCTGIELLVT 243 (250)
T ss_dssp --TSSCBCHHHHHHHHHHHHHHCTTCCSCEEEES
T ss_pred --CCCCCCHHHHHHHHHHHhCccCCCcCCeEEEC
Confidence 23478999999999998853 22366444444
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.92 E-value=3.9e-24 Score=180.19 Aligned_cols=226 Identities=14% Similarity=0.117 Sum_probs=163.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
++++|++|||||++.||+++++.|+++|++|++++|++++.+...+.+... ...+.++.+|++++++++++++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~--~~~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999877666555544333 3578889999999998776654
Q ss_pred ---CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|++||+|+... ....+.+...+++|+.++..+.+++.+. .+.+++|++||.++..+.+
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~--------- 151 (258)
T d1ae1a_ 81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALP--------- 151 (258)
T ss_dssp TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCT---------
T ss_pred hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccccc---------
Confidence 3799999998733 2334567789999999999998877643 2556899999987654211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCc---chHHHHHHHHhCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLN---TSAAAVLSLIKGAQTY 223 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~ 223 (328)
....|+.+|.+.+.+++.++.++ |+++.+|.||.+..|....... ........+....|
T Consensus 152 -------------~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p-- 216 (258)
T d1ae1a_ 152 -------------SVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP-- 216 (258)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST--
T ss_pred -------------cchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCC--
Confidence 13459999999999999998874 7999999999998874322211 12233344433221
Q ss_pred CCCCccceeHHHHHHHHHHhhcC--CCCCCcEEEecCcc
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEV--PSANGRYCLVERVS 260 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~--~~~~g~~~~~~~~~ 260 (328)
...+..++|+|.++.+++.. ....|....+++.+
T Consensus 217 ---lgR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~ 252 (258)
T d1ae1a_ 217 ---MGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGF 252 (258)
T ss_dssp ---TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ---CCCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCCe
Confidence 23378999999999999954 33477555555443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.92 E-value=4.7e-24 Score=178.63 Aligned_cols=220 Identities=13% Similarity=0.089 Sum_probs=153.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|++.+.. ....... ..++.++++|++|+++++++++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~--~~~~~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 77 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEA--EAAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVIST 77 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHH--HHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHH--HHHHHHc--CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999765321 2222222 3578999999999998887765
Q ss_pred --CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++|||||... ....+.+...+++|+.++.++.+++.+.+ +.+++|++||.++..+.+
T Consensus 78 ~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~---------- 147 (247)
T d2ew8a1 78 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIE---------- 147 (247)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCS----------
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccCc----------
Confidence 6899999999733 23345677999999999999998776531 446899999986554211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+.+.+++.++.+. |+++++|.||.+-.|...... ........... ....
T Consensus 148 ------------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~--~~~~~~~~~~~----~~~l 209 (247)
T d2ew8a1 148 ------------AYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASA--LSAMFDVLPNM----LQAI 209 (247)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------CT----TSSS
T ss_pred ------------ccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccc--cchhHHHHHHH----hccC
Confidence 12459999999999999998864 899999999999877432211 00111111111 1122
Q ss_pred ccceeHHHHHHHHHHhhcCCC--CCCcEEEec
Q 020266 228 FGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
..+..++|+|+++++++.... ..|....++
T Consensus 210 ~r~~~pedvA~~v~fL~S~~s~~itG~~i~vD 241 (247)
T d2ew8a1 210 PRLQVPLDLTGAAAFLASDDASFITGQTLAVD 241 (247)
T ss_dssp CSCCCTHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred CCCCCHHHHHHHHHHHhCchhcCCcCCeEEEC
Confidence 247789999999999986432 366444343
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.92 E-value=1.8e-24 Score=181.65 Aligned_cols=224 Identities=17% Similarity=0.158 Sum_probs=161.1
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
+.+++|+++||||++.||+++++.|+++|++|++.+|+.+..+.+...+. ...++.++.+|++|++++.++++
T Consensus 2 nrL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (251)
T d1zk4a1 2 NRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEK 78 (251)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999998766555444432 34579999999999998877765
Q ss_pred ---CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---Cc-cEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SI-KRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~-~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|++|||||... ....+.+...+++|+.++.++.+++.+.+ +. .++|++||.++..+.+
T Consensus 79 ~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~-------- 150 (251)
T d1zk4a1 79 AFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDP-------- 150 (251)
T ss_dssp HHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCT--------
T ss_pred HhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCC--------
Confidence 6899999998732 22344566899999999999988875431 32 4799999976554211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh-----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.+|.+.+.+.+.++.+ +|+++++|.||.+..|....... ... ........
T Consensus 151 --------------~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~--~~~---~~~~~~~~ 211 (251)
T d1zk4a1 151 --------------SLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG--AEE---AMSQRTKT 211 (251)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT--HHH---HHTSTTTC
T ss_pred --------------CchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCC--HHH---HHHHHhCC
Confidence 1245999999999999987754 47999999999997763221110 111 11111111
Q ss_pred CCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEecCcc
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~ 260 (328)
| ...+..++|+|.++++++.... ..|....+++.+
T Consensus 212 p--l~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 248 (251)
T d1zk4a1 212 P--MGHIGEPNDIAYICVYLASNESKFATGSEFVVDGGY 248 (251)
T ss_dssp T--TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred C--CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECccc
Confidence 2 2347799999999999986432 367554444333
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.92 E-value=3.3e-24 Score=180.82 Aligned_cols=223 Identities=16% Similarity=0.130 Sum_probs=163.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|+.++.+.+...+... ..++.++++|++|+++++++++
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999877766654444332 3578889999999988776653
Q ss_pred ---CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|++|||||... ....+.+...+++|+.++.++.+++.+. .+.+++|++||.++..+.+
T Consensus 83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~--------- 153 (259)
T d2ae2a_ 83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVP--------- 153 (259)
T ss_dssp TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCT---------
T ss_pred hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccccc---------
Confidence 4899999999632 2334557789999999999998876553 2456899999976544211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.+|.+.+.+++.++.+. |+++++|.||.|-.|...... ......+.++....|
T Consensus 154 -------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~p--- 217 (259)
T d2ae2a_ 154 -------------YEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA--- 217 (259)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST---
T ss_pred -------------cccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCC---
Confidence 23559999999999999999864 899999999999776321100 111233344444332
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC--CCCcEEEec
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
...+..++|+|.++++++.... ..|....++
T Consensus 218 --l~R~g~pedvA~~v~fL~S~~s~~itG~~i~VD 250 (259)
T d2ae2a_ 218 --LRRMGEPKELAAMVAFLCFPAASYVTGQIIYVD 250 (259)
T ss_dssp --TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred --CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEEC
Confidence 2247789999999999986432 367554444
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=2.9e-24 Score=180.29 Aligned_cols=227 Identities=15% Similarity=0.102 Sum_probs=163.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|+.++.......+... ...++.++++|++|+++++++++
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~-~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK-YGVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH-hCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999877655543332211 13578899999999998887775
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++|||||.... ...+.+...+++|+.++.++.+++.+.+ +.+++|++||..+.....
T Consensus 81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~---------- 150 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTM---------- 150 (251)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCS----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccC----------
Confidence 68999999986322 2345677889999999999988776541 446899999964332110
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
.....|+.+|.+.+.+++.++.+. |+++.+|.||.+-.+...... .............| .
T Consensus 151 -----------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~-~~~~~~~~~~~~~p-----l 213 (251)
T d1vl8a_ 151 -----------PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVF-SDPEKLDYMLKRIP-----L 213 (251)
T ss_dssp -----------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHH-TCHHHHHHHHHTCT-----T
T ss_pred -----------ccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhcc-CCHHHHHHHHhcCC-----C
Confidence 012459999999999999998864 899999999999877532110 01233334444322 2
Q ss_pred ccceeHHHHHHHHHHhhcCC--CCCCcEEEecCcc
Q 020266 228 FGWVNVKDVANAHIQAFEVP--SANGRYCLVERVS 260 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~~~ 260 (328)
..+..++|+|+++++++... ...|....+++.+
T Consensus 214 ~R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 214 GRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW 248 (251)
T ss_dssp SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcCe
Confidence 23678999999999988643 2367554444433
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=5.2e-24 Score=178.24 Aligned_cols=217 Identities=15% Similarity=0.091 Sum_probs=154.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|++|||||++.||+++++.|+++|++|++.+|+++..+. .+. .+..++++|++|+++++++++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~-~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEV-AEA-------IGGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHH-HHH-------HTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHH-------cCCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999998764332 221 145678999999988777765
Q ss_pred -CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|++|||||... ....+.++..+++|+.++.++.+++.+. .+.+++|++||.++..+.+
T Consensus 75 G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~----------- 143 (248)
T d2d1ya1 75 GRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQ----------- 143 (248)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCT-----------
T ss_pred CCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccccccc-----------
Confidence 6899999998632 2234457788999999999999887654 1456899999987655321
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC--CcchHHHHHHHHhCCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT--LNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|.+.+.+++.++.+. |+++.+|.||.+-.|..... .........+..... ..
T Consensus 144 -----------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~----~p 208 (248)
T d2d1ya1 144 -----------ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDL----HA 208 (248)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTT----ST
T ss_pred -----------ccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhc----CC
Confidence 23559999999999999998874 89999999999876521000 000001111111111 11
Q ss_pred CccceeHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 227 TFGWVNVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
...+..++|+|.++.+++... ...|.....+
T Consensus 209 l~R~~~pedia~~v~fL~S~~s~~itG~~i~vD 241 (248)
T d2d1ya1 209 LRRLGKPEEVAEAVLFLASEKASFITGAILPVD 241 (248)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCCCcEEEcC
Confidence 234778999999999998643 2467444444
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.91 E-value=1.2e-24 Score=183.97 Aligned_cols=228 Identities=17% Similarity=0.142 Sum_probs=158.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-ChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|++|||||++.||+++++.|+++|++|++.+|+.. ..+.+...+... ...++.++++|++|+++++++++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~-~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ-HGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH-HTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999753 333333332221 13578899999999998888775
Q ss_pred --CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++|||||... ....+.+...+++|+.++.++++++.+.+ +.+++|++||.++..+.+
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~---------- 150 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASA---------- 150 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccC----------
Confidence 6899999999632 23445677899999999999888765541 446899999987665321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchH--------HHHHHHHhC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSA--------AAVLSLIKG 219 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~--------~~~~~~~~~ 219 (328)
....|+.+|.+.+.+++.++.+ +|+++++|.||.+-.|.......... .........
T Consensus 151 ------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (260)
T d1x1ta1 151 ------------NKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSE 218 (260)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHH
T ss_pred ------------CcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHh
Confidence 1245999999999999999886 48999999999998774322110000 000000000
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEecCccC
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVERVSH 261 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~~~~ 261 (328)
......+..++|+|+++++++... ...|....+++.+|
T Consensus 219 ----~~Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG~t 258 (260)
T d1x1ta1 219 ----KQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWT 258 (260)
T ss_dssp ----HCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ----cCCCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcchh
Confidence 011234789999999999998643 24675544444343
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.91 E-value=5.6e-24 Score=179.60 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=161.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||++.||+++++.|+++|++|++.+|+++..+.+...+... ..++..+.+|++|+++++++++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999877666655544332 3578999999999998887775
Q ss_pred -CccEEEEccCCCC------CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFY------HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++|||||... ....+.+...+++|+.++.++.+++.+. .+.+++|++||.++..+.+
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~---------- 150 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPP---------- 150 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCT----------
T ss_pred CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCc----------
Confidence 6899999998632 2234457788999999999998877553 1456899999987665321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCC-------------CCCCcchHHHHH
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLL-------------QPTLNTSAAAVL 214 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~-------------~~~~~~~~~~~~ 214 (328)
....|+.+|.+.+.+++.++.+. |+++++|.||.|-.+.. ............
T Consensus 151 ------------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (260)
T d1zema1 151 ------------NMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQ 218 (260)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHH
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHH
Confidence 12459999999999999998874 79999999999977621 000111112223
Q ss_pred HHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCc
Q 020266 215 SLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGR 252 (328)
Q Consensus 215 ~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~ 252 (328)
.+....| ...+..++|+|.++++++... ...|.
T Consensus 219 ~~~~~~P-----l~R~g~pedvA~~v~fL~S~~s~~itG~ 253 (260)
T d1zema1 219 QMIGSVP-----MRRYGDINEIPGVVAFLLGDDSSFMTGV 253 (260)
T ss_dssp HHHHTST-----TSSCBCGGGSHHHHHHHHSGGGTTCCSC
T ss_pred HHHhcCC-----CCCCcCHHHHHHHHHHHhCchhcCccCC
Confidence 3333222 234778999999999998743 23563
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.1e-24 Score=181.86 Aligned_cols=217 Identities=16% Similarity=0.151 Sum_probs=158.2
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|..+++|++|||||++.||+++++.|+++|++|++.+|+.++.+.+...+.......++.++++|+++++++.++++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999999887777666655555445688999999999998877665
Q ss_pred ----CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhc----CC-CccEEEEecchhhhccCCCCCCCC
Q 020266 81 ----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAK----FP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ----~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~----~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
++|++|||||... ....+.+...+++|+.++.++.+++.+ .. ..+++|++||++...+.+
T Consensus 85 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p------ 158 (257)
T d1xg5a_ 85 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLP------ 158 (257)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCS------
T ss_pred HhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCC------
Confidence 6899999998632 233556778899999999888776643 31 246899999976543211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh-----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
.+ ....|+.+|.+.+.+++.++.+ +++++.+|.||.+-.+.................
T Consensus 159 ---------~~-----~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~---- 220 (257)
T d1xg5a_ 159 ---------LS-----VTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY---- 220 (257)
T ss_dssp ---------CG-----GGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH----
T ss_pred ---------Cc-----ccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcC----
Confidence 00 1245999999999999988754 589999999998765421100000111111111
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
....+..++|+|+++++++..+.
T Consensus 221 ----~~~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 221 ----EQMKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp ----C---CBCHHHHHHHHHHHHHSCT
T ss_pred ----CCCCCcCHHHHHHHHHHHhCChh
Confidence 12237899999999999987653
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=2.4e-24 Score=181.57 Aligned_cols=222 Identities=12% Similarity=0.101 Sum_probs=150.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
++++|+++||||++.||+++++.|+++|++|++.+|++++.+.....+... ..++..+.+|+++++++.++++
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEeccCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999887766655544332 3478999999999988776553
Q ss_pred ---CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 ---~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
.+|++|||||... ....+.+...+++|+.++.++.+++.+.+ +.+++|++||.+...+.+
T Consensus 83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~--------- 153 (259)
T d1xq1a_ 83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSAS--------- 153 (259)
T ss_dssp HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------------------
T ss_pred hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccccccc---------
Confidence 4899999998632 23345677899999999999998776531 456899999976554211
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|.+.+.+++.++.+. |+++.+|-||.+-.|...... .....+..... ..
T Consensus 154 -------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~---~~~~~~~~~~~----~p 213 (259)
T d1xq1a_ 154 -------------VGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY---DDEFKKVVISR----KP 213 (259)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------------
T ss_pred -------------ccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhc---hHHHHHHHHhC----CC
Confidence 12459999999999999998864 899999999999877432211 01111111111 11
Q ss_pred CccceeHHHHHHHHHHhhcCC--CCCCcEEEecC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP--SANGRYCLVER 258 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~ 258 (328)
...+..++|+|.++++++... ...|.....++
T Consensus 214 l~R~~~pedvA~~v~fL~S~~s~~iTG~~i~vDG 247 (259)
T d1xq1a_ 214 LGRFGEPEEVSSLVAFLCMPAASYITGQTICVDG 247 (259)
T ss_dssp ----CCGGGGHHHHHHHTSGGGTTCCSCEEECCC
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCcCcEEEeCC
Confidence 223678999999999998643 23664444443
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.91 E-value=6.1e-24 Score=179.18 Aligned_cols=226 Identities=14% Similarity=0.067 Sum_probs=161.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|+.++ .+.+.+.+... ..++..+++|++|+++++++++
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999997643 33333333332 3578899999999998887775
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|++|||||.... ...+.+...+++|+.++.++.+++.+. ....++|++||.+...+.+
T Consensus 82 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~-------- 153 (261)
T d1geea_ 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWP-------- 153 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCT--------
T ss_pred HhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCc--------
Confidence 68999999987332 334567788999999999998876543 2334689999976544211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+++.++.++ |+++.+|.||.+..|...... .............|
T Consensus 154 --------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~-~~~~~~~~~~~~~p---- 214 (261)
T d1geea_ 154 --------------LFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKF-ADPEQRADVESMIP---- 214 (261)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHH-HSHHHHHHHHTTCT----
T ss_pred --------------cccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhc-CCHHHHHHHHhcCC----
Confidence 12459999999999999998864 899999999999876421100 00112222222211
Q ss_pred CCccceeHHHHHHHHHHhhcCCC--CCCcEEEecCccC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~~ 261 (328)
...+..++|+|+++++++.... ..|.....++.++
T Consensus 215 -l~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s 251 (261)
T d1geea_ 215 -MGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -CCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCee
Confidence 2337799999999999986432 4675544444433
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.91 E-value=9.9e-24 Score=176.96 Aligned_cols=214 Identities=16% Similarity=0.153 Sum_probs=156.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|+.++...+.+.+ ..++.++++|++++++++++++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999876555433322 3578999999999998887775
Q ss_pred --CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|++|||||... ....+.+...+++|+.++.++.+++.+. .+.+++|++||.++..+.+
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~---------- 146 (254)
T d1hdca_ 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLA---------- 146 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhccccc----------
Confidence 6899999998732 2234556788999999999998877543 1457999999987655321
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC--CCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA--QTYPN 225 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~~~ 225 (328)
....|+.+|.+.+.+.+.++.++ |+++.+|.||.+..|. ........ .....
T Consensus 147 ------------~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~-----------~~~~~~~~~~~~~~~ 203 (254)
T d1hdca_ 147 ------------LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM-----------TAETGIRQGEGNYPN 203 (254)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-----------HHHHTCCCSTTSCTT
T ss_pred ------------chhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc-----------chhcCHHHHHHHHhC
Confidence 12559999999999999999864 7999999999986652 11111111 11111
Q ss_pred C-Cccc-eeHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 226 V-TFGW-VNVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 226 ~-~~~~-v~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
. ...+ ..++|+|.++++++... ...|.....+
T Consensus 204 ~pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vD 239 (254)
T d1hdca_ 204 TPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVD 239 (254)
T ss_dssp STTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CCCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeC
Confidence 1 1123 36899999999998643 2467444443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=3.7e-24 Score=178.60 Aligned_cols=217 Identities=19% Similarity=0.137 Sum_probs=159.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---Ccc
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---GCD 83 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d 83 (328)
+++|++|||||++.||+++++.|+++|++|++.+|++++.+.+.... .++..+.+|++|+++++++++ ++|
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 57999999999999999999999999999999999876655543332 368889999999999998887 579
Q ss_pred EEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 84 GVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 84 ~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
++|||||... ....+.+...+++|+.++.++.+++.+. ...+++|++||.+...+.+
T Consensus 77 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~-------------- 142 (242)
T d1cyda_ 77 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP-------------- 142 (242)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT--------------
T ss_pred EEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCC--------------
Confidence 9999998632 2234557788999999999998866442 2446899999976544211
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccce
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (328)
....|+.+|.+.+.+++.++.+. |+++.+|.||.+..|...... ........+....| ...+.
T Consensus 143 --------~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~-~~~~~~~~~~~~~p-----l~R~~ 208 (242)
T d1cyda_ 143 --------NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS-ADPEFARKLKERHP-----LRKFA 208 (242)
T ss_dssp --------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT-CCHHHHHHHHHHST-----TSSCB
T ss_pred --------ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhc-CCHHHHHHHHhcCC-----CCCCc
Confidence 12459999999999999998864 799999999998876311100 01223333333222 23478
Q ss_pred eHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 232 NVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
.++|+|+++.+++... ...|.-...+
T Consensus 209 ~peeva~~v~fL~S~~s~~itG~~i~vD 236 (242)
T d1cyda_ 209 EVEDVVNSILFLLSDRSASTSGGGILVD 236 (242)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSSEEEES
T ss_pred CHHHHHHHHHHHhCchhcCcCCceEEeC
Confidence 9999999999998643 2366443333
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.91 E-value=9.7e-24 Score=177.96 Aligned_cols=220 Identities=16% Similarity=0.096 Sum_probs=162.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+|++|||||++.||+++++.|+++|++|++.+|++++.+.+...+... ..++.++++|++|+++++++++ +
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 788999999999999999999999999999999877766655554433 3578999999999998887775 6
Q ss_pred ccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC-----CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 82 CDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP-----SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 82 ~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-----~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
+|++|||||... ....+.+.+.+++|+.++.++.+++.+.. +..++|++||.+...+.+
T Consensus 80 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~----------- 148 (257)
T d2rhca1 80 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVV----------- 148 (257)
T ss_dssp CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCT-----------
T ss_pred CCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccc-----------
Confidence 899999998632 23345677899999999999999887641 346899999976655321
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCC--------CCcchHHHHHHHHhCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQP--------TLNTSAAAVLSLIKGA 220 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~~~~ 220 (328)
....|+.+|.+.+.+++.++.+. |+++++|.||.+-.|.... ..........++....
T Consensus 149 -----------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 217 (257)
T d2rhca1 149 -----------HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARV 217 (257)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS
T ss_pred -----------cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcC
Confidence 13559999999999999999874 7999999999987652110 0001122333333322
Q ss_pred CCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 221 QTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 221 ~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
| ...+..++|+|.++++++... ...|.....+
T Consensus 218 P-----lgR~~~pedia~~v~fL~S~~s~~itG~~i~vD 251 (257)
T d2rhca1 218 P-----IGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVC 251 (257)
T ss_dssp T-----TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred C-----CCCCcCHHHHHHHHHHHhCchhcCCcCceEEEC
Confidence 1 234789999999999999643 3466444343
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.91 E-value=1.2e-23 Score=177.22 Aligned_cols=219 Identities=14% Similarity=0.074 Sum_probs=158.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||++.||+++++.|+++|++|++.+|+.++.+.+...+ ..++.++++|++|+++++++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 77 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-----GPAACAIALDVTDQASIDRCVAELLDRW 77 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999876655544432 3578899999999998888775
Q ss_pred -CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 -~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++|||||... ....+.+...+++|+.++.++++++.+. .+..++|++||.++..+.+
T Consensus 78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~---------- 147 (256)
T d1k2wa_ 78 GSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEA---------- 147 (256)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT----------
T ss_pred CCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccc----------
Confidence 6899999999633 2234557788999999999998865432 2346899999987654221
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcc--------hHHHHHHHHhC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT--------SAAAVLSLIKG 219 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~--------~~~~~~~~~~~ 219 (328)
....|+.+|.+.+.+++.++.+. |+++++|.||.+-.|........ .......+...
T Consensus 148 ------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
T d1k2wa_ 148 ------------LVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAA 215 (256)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred ------------cccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhc
Confidence 12559999999999999998864 89999999998887742110000 00011111111
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcE-EEec
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRY-CLVE 257 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~-~~~~ 257 (328)
.....+..++|+|.++++++... ...|.- .+.+
T Consensus 216 -----~PlgR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDG 251 (256)
T d1k2wa_ 216 -----VPFGRMGRAEDLTGMAIFLATPEADYIVAQTYNVDG 251 (256)
T ss_dssp -----STTSSCBCHHHHHHHHHHTTSGGGTTCCSCEEEEST
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCchhCCccCceEEECc
Confidence 11234779999999999988643 236644 4433
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.3e-23 Score=177.41 Aligned_cols=228 Identities=14% Similarity=0.091 Sum_probs=158.9
Q ss_pred CcccccCCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 1 MSSVAAAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
||+.+ +++|++|||||+| .||++++++|+++|++|++.+|+++..+........ ..+...+++|++|+++++++
T Consensus 1 M~~~~-L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~ 76 (256)
T d1ulua_ 1 MLTVD-LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEA---LGGALLFRADVTQDEELDAL 76 (256)
T ss_dssp CEEEC-CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH---TTCCEEEECCTTCHHHHHHH
T ss_pred CCCcC-CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhc---cCcccccccccCCHHHHHHH
Confidence 66665 6899999999998 799999999999999999988875443332222222 23567899999999988877
Q ss_pred hC-------CccEEEEccCCCC---------CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCC
Q 020266 79 VD-------GCDGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGK 141 (328)
Q Consensus 79 ~~-------~~d~vih~a~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~ 141 (328)
++ ++|++||||+... +...+.+...+++|+.++..+++++.+.. +.+++|++||.++..+.+
T Consensus 77 ~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~~- 155 (256)
T d1ulua_ 77 FAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVP- 155 (256)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCT-
T ss_pred HHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCCC-
Confidence 65 6899999998632 11223355678999999999999887652 236899999976554321
Q ss_pred CCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHh
Q 020266 142 PRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIK 218 (328)
Q Consensus 142 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~ 218 (328)
....|+.+|.+.+.+++.++.+. |+++.+|.||.+..+...... ...........
T Consensus 156 ---------------------~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~-~~~~~~~~~~~ 213 (256)
T d1ulua_ 156 ---------------------KYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP-GFTKMYDRVAQ 213 (256)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------CHHHHHHHHH
T ss_pred ---------------------CchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchh-hhHHHHHHHHh
Confidence 13559999999999999999864 899999999999887533211 12233333333
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEecCcc
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~ 260 (328)
..| ...+..++|+|.++++++.... ..|....+++.+
T Consensus 214 ~~p-----l~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 252 (256)
T d1ulua_ 214 TAP-----LRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGY 252 (256)
T ss_dssp HST-----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cCC-----CCCCcCHHHHHHHHHHHhCchhCCccCCeEEECcCE
Confidence 222 2337789999999999987532 467554444333
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.2e-24 Score=179.28 Aligned_cols=217 Identities=17% Similarity=0.152 Sum_probs=158.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------- 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 80 (328)
++|++|||||++.||+++++.|+++|++|++.+|+.++.+.....+.......++.++++|++|+++++++++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999999999999999887766655544443345679999999999998887775
Q ss_pred CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC------CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP------SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
++|++||||+.... .++++.+++|+.++.++..++.+.. ...++|++||.++..+.+
T Consensus 82 ~iDilVnnAg~~~~---~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~-------------- 144 (254)
T d2gdza1 82 RLDILVNNAGVNNE---KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVA-------------- 144 (254)
T ss_dssp CCCEEEECCCCCCS---SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT--------------
T ss_pred CcCeeccccccccc---ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCC--------------
Confidence 68999999997543 4567899999999888877765431 235799999987655211
Q ss_pred CCccccccCCchhhhhhHHHHHHHHH--HHH---hcCccEEEEcCCcccCCCCCCCC--------cchHHHHHHHHhCCC
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWK--FAK---EKSIDLVTINPAMVIGPLLQPTL--------NTSAAAVLSLIKGAQ 221 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~--~~~---~~~~~~~ilRp~~v~G~~~~~~~--------~~~~~~~~~~~~~~~ 221 (328)
....|+.+|.+.+.++++ ++. .+|+++++|.||.+-.|...... ......+.....
T Consensus 145 --------~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p--- 213 (254)
T d2gdza1 145 --------QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIK--- 213 (254)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHH---
T ss_pred --------CccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCC---
Confidence 124599999999999885 333 35899999999998765211100 001111111110
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCCCC-cEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPSANG-RYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~ 257 (328)
...+..++|+|+++++++.+....| ...+.+
T Consensus 214 -----~~r~~~pedvA~~v~fL~s~~~itG~~i~VdG 245 (254)
T d2gdza1 214 -----YYGILDPPLIANGLITLIEDDALNGAIMKITT 245 (254)
T ss_dssp -----HHCCBCHHHHHHHHHHHHHCTTCSSCEEEEET
T ss_pred -----CCCCcCHHHHHHHHHHHHcCCCCCCCEEEECC
Confidence 1126789999999999998776677 445544
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.90 E-value=9.6e-24 Score=186.44 Aligned_cols=225 Identities=16% Similarity=0.174 Sum_probs=160.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc-hHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~vi 86 (328)
+.|+|+|||||||||++|+++|+++||+|+++.|+.++..... +. ..++++.+++|++|+.+ +..++.++|.++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~-~~----~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~ 76 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEE-LQ----AIPNVTLFQGPLLNNVPLMDTLFEGAHLAF 76 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHH-HH----TSTTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhh-hc----ccCCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence 3689999999999999999999999999999999887654311 11 13579999999998654 677888999998
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW 166 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 166 (328)
++... ....|+..+.+++++|.+. +++++|++||........ .. ....
T Consensus 77 ~~~~~-----------~~~~~~~~~~~~~~aa~~a-gv~~~v~~Ss~~~~~~~~--------------~~------~~~~ 124 (350)
T d1xgka_ 77 INTTS-----------QAGDEIAIGKDLADAAKRA-GTIQHYIYSSMPDHSLYG--------------PW------PAVP 124 (350)
T ss_dssp ECCCS-----------TTSCHHHHHHHHHHHHHHH-SCCSEEEEEECCCGGGTS--------------SC------CCCT
T ss_pred eeccc-----------ccchhhhhhhHHHHHHHHh-CCCceEEEeeccccccCC--------------cc------cchh
Confidence 77532 1234677889999999998 777888888854322110 00 1133
Q ss_pred hhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCC-----CCCCCCCccceeH-HHHHHHH
Q 020266 167 YPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGA-----QTYPNVTFGWVNV-KDVANAH 240 (328)
Q Consensus 167 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~v-~D~a~~~ 240 (328)
|..+|...|...+ ..+++++++||+.+++............ .....+. +..++..+.++++ +|+++++
T Consensus 125 ~~~~k~~~~~~~~----~~~~~~~~vr~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v 198 (350)
T d1xgka_ 125 MWAPKFTVENYVR----QLGLPSTFVYAGIYNNNFTSLPYPLFQM--ELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPAL 198 (350)
T ss_dssp TTHHHHHHHHHHH----TSSSCEEEEEECEEGGGCBSSSCSSCBE--EECTTSCEEEEESSCTTSCEEEECHHHHHHHHH
T ss_pred hhhhHHHHHHHHH----hhccCceeeeeceeeccccccccccccc--cccccccceeeecccCCCcceEEEeHHHHHHHH
Confidence 7788888777654 4578999999998887532211110000 0011111 2235677788876 7999999
Q ss_pred HHhhcCCC--CCC-cEEEecCccCHHHHHHHHHHhCCC
Q 020266 241 IQAFEVPS--ANG-RYCLVERVSHYSEIVNIIRELYPA 275 (328)
Q Consensus 241 ~~~~~~~~--~~g-~~~~~~~~~~~~el~~~i~~~~~~ 275 (328)
..++.++. ..| .|+++++.+|+.|+++.+.+++|.
T Consensus 199 ~~~l~~~~~~~~G~~~~~~g~~~T~~eia~~l~~~~G~ 236 (350)
T d1xgka_ 199 LQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNR 236 (350)
T ss_dssp HHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTS
T ss_pred HHHHhCChhhcCCeEEEEeCCcCCHHHHHHHHHHHHCC
Confidence 99987532 245 788888889999999999999874
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.90 E-value=1.9e-23 Score=175.93 Aligned_cols=219 Identities=16% Similarity=0.120 Sum_probs=157.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Cc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GC 82 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 82 (328)
|.+|||||++.||+++++.|+++|++|++.+|++++.+.+...+... ..++.++++|++|++++.++++ ++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 79 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 45799999999999999999999999999999887766655554433 3578899999999998887765 68
Q ss_pred cEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 83 DGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 83 d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
|++|||||... ....+.+...+++|+.++.++++++.+. +...++|++||.++..+.+
T Consensus 80 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~------------- 146 (255)
T d1gega_ 80 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNP------------- 146 (255)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-------------
T ss_pred cEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCc-------------
Confidence 99999998632 2334557789999999999998876542 2346799999976554211
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC--------cchHHHHHHHHhCCCC
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL--------NTSAAAVLSLIKGAQT 222 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~--------~~~~~~~~~~~~~~~~ 222 (328)
....|+.+|.+.+.+++.++.+. |+++++|.||.+-.|...... .........+.+..
T Consensus 147 ---------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 215 (255)
T d1gega_ 147 ---------ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI-- 215 (255)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTC--
T ss_pred ---------ccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcC--
Confidence 23559999999999999998864 899999999998765311000 00001111122211
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
....+..++|+|+++++++... ...|....++
T Consensus 216 ---pl~R~~~peevA~~v~fL~S~~a~~itG~~i~vD 249 (255)
T d1gega_ 216 ---TLGRLSEPEDVAACVSYLASPDSDYMTGQSLLID 249 (255)
T ss_dssp ---TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred ---CCCCCcCHHHHHHHHHHHhCchhCCccCcEEEec
Confidence 1234789999999999998643 2366444443
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.90 E-value=1.4e-23 Score=175.33 Aligned_cols=220 Identities=15% Similarity=0.126 Sum_probs=160.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------C
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------G 81 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 81 (328)
+.||||||++.||+++++.|+++|++|++.++ +.+..+.+...++.. +.++.++++|++|+++++++++ +
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999999999988755 544455554444333 3578899999999998877765 6
Q ss_pred ccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 82 CDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 82 ~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
+|++|||||... ....+.++..+++|+.++.++.+++.+.+ +.+++|++||.++..+.+
T Consensus 80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~------------- 146 (244)
T d1edoa_ 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNI------------- 146 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT-------------
T ss_pred CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCC-------------
Confidence 899999998633 23455677899999999999988776541 457999999987766321
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW 230 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (328)
....|+.+|.+.+.+.+.++.++ |+++++|.||.+-.|..... ............| ...+
T Consensus 147 ---------~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~---~~~~~~~~~~~~p-----l~R~ 209 (244)
T d1edoa_ 147 ---------GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL---GEDMEKKILGTIP-----LGRT 209 (244)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CHHHHHHHHTSCT-----TCSC
T ss_pred ---------CCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHh---hHHHHHHHHhcCC-----CCCC
Confidence 12459999999999999999874 89999999999877632211 1223333333222 2347
Q ss_pred eeHHHHHHHHHHhhcCCC---CCCcEEEecCccC
Q 020266 231 VNVKDVANAHIQAFEVPS---ANGRYCLVERVSH 261 (328)
Q Consensus 231 v~v~D~a~~~~~~~~~~~---~~g~~~~~~~~~~ 261 (328)
..++|+|.++.+++..+. ..|.....++.+|
T Consensus 210 ~~p~dvA~~v~fLa~S~~a~~itG~~i~vdGG~s 243 (244)
T d1edoa_ 210 GQPENVAGLVEFLALSPAASYITGQAFTIDGGIA 243 (244)
T ss_dssp BCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHHCCchhcCCcCCeEEeCCCee
Confidence 799999999999863322 3665554544443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.90 E-value=8e-24 Score=177.73 Aligned_cols=223 Identities=16% Similarity=0.122 Sum_probs=158.5
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
+.+++|+++||||++.||+++++.|+++|++|++.+|++++.+.+...+ ..+..++++|++|+++++++++
T Consensus 2 nrL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~ 76 (253)
T d1hxha_ 2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEeecCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999876655544433 3467889999999988777765
Q ss_pred ---CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 ---GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 ---~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++|||||... ....+.+...+++|+.++.++.+++.+.+ +..++|++||.++..+.+
T Consensus 77 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~~---------- 146 (253)
T d1hxha_ 77 RLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIE---------- 146 (253)
T ss_dssp HHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCT----------
T ss_pred HhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCcc----------
Confidence 6899999999632 22344577899999999999988776541 337899999987654211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh-----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
....|+.+|.+.+.+++.++.+ +++++.+|-||.+..|........ ..........+. -.
T Consensus 147 ------------~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~--~~~~~~~~~~~~-~~ 211 (253)
T d1hxha_ 147 ------------QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPK--GVSKEMVLHDPK-LN 211 (253)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCT--TCCHHHHBCBTT-TB
T ss_pred ------------ccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcc--hhhHHHHHhCcc-cc
Confidence 1245999999999999988765 359999999999877521000000 000111221110 01
Q ss_pred CCccceeHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
..-.+..++|+|+++++++... ...|.....+
T Consensus 212 ~~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VD 245 (253)
T d1hxha_ 212 RAGRAYMPERIAQLVLFLASDESSVMSGSELHAD 245 (253)
T ss_dssp TTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred ccCCCCCHHHHHHHHHHHhChhhCCCcCcEEEEC
Confidence 1224788999999999998643 2367443333
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.90 E-value=8.6e-23 Score=171.49 Aligned_cols=217 Identities=15% Similarity=0.109 Sum_probs=158.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCC-cCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE-EGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~----- 80 (328)
+++|+||||||++.||..+++.|+++|++|+++.|+.++...+..+.. .....++.++.+|+++ .+++.++++
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA-INPKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHH-HCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHh-hCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999998777655544332 2335689999999984 445555443
Q ss_pred --CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCC------CccEEEEecchhhhccCCCCCCCCccccCC
Q 020266 81 --GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFP------SIKRVVLTSSMAAVLNTGKPRTPDVVVDET 152 (328)
Q Consensus 81 --~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~ 152 (328)
++|++|||||... .+.++..+++|+.|+.++.+++.+.+ ...++|++||.++..+.+
T Consensus 82 ~g~iDilvnnAG~~~---~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~------------ 146 (254)
T d1sbya1 82 LKTVDILINGAGILD---DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIH------------ 146 (254)
T ss_dssp HSCCCEEEECCCCCC---TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT------------
T ss_pred cCCCCEEEeCCCCCC---HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCC------------
Confidence 6899999999743 45678999999999999988776531 236799999987665321
Q ss_pred CCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCC--CCcchHHHHHHHHhCCCCCCCCC
Q 020266 153 WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQP--TLNTSAAAVLSLIKGAQTYPNVT 227 (328)
Q Consensus 153 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 227 (328)
....|+.||.+...+++.++.+. |+++++|.||.|..|.... ........+.+...+
T Consensus 147 ----------~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~-------- 208 (254)
T d1sbya1 147 ----------QVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS-------- 208 (254)
T ss_dssp ----------TSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT--------
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhcccc--------
Confidence 23559999999999999998864 8999999999998762110 000011112222222
Q ss_pred ccceeHHHHHHHHHHhhcCCCCCC-cEEEecC
Q 020266 228 FGWVNVKDVANAHIQAFEVPSANG-RYCLVER 258 (328)
Q Consensus 228 ~~~v~v~D~a~~~~~~~~~~~~~g-~~~~~~~ 258 (328)
+....++++|++++.+++... .| ++.+.++
T Consensus 209 ~~~~~~e~va~~~~~~~~~~~-tG~vi~vdgG 239 (254)
T d1sbya1 209 HPTQTSEQCGQNFVKAIEANK-NGAIWKLDLG 239 (254)
T ss_dssp SCCEEHHHHHHHHHHHHHHCC-TTCEEEEETT
T ss_pred CCCCCHHHHHHHHHHhhhCCC-CCCEEEECCC
Confidence 235689999999999887654 56 5555543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.90 E-value=2.6e-23 Score=173.36 Aligned_cols=220 Identities=15% Similarity=0.116 Sum_probs=159.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||++.||+++++.|+++|++|++.+|+.++...+... . ..++.++++|++++++++++++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~--~~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA---L--EAEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---C--CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---c--CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999987665443332 2 3578899999999998877665
Q ss_pred -CccEEEEccCCC-----CCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 81 -GCDGVCHTASPF-----YHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 81 -~~d~vih~a~~~-----~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
++|++||||+.. .....+.+...+++|+.++..+.+++.+....++.|.++|+.+....
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~--------------- 142 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA--------------- 142 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH---------------
T ss_pred CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccc---------------
Confidence 689999999852 23334567788999999999999988765333334444443322210
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccce
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWV 231 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 231 (328)
| ....|+.+|.+.|.+++.++.++ |+++.+|.||.+-.+.... .......+..+..| ...+.
T Consensus 143 --~-----~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~---~~~~~~~~~~~~~p-----~~r~~ 207 (241)
T d2a4ka1 143 --F-----GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG---LPPWAWEQEVGASP-----LGRAG 207 (241)
T ss_dssp --H-----HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT---SCHHHHHHHHHTST-----TCSCB
T ss_pred --c-----CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHh---hhHhHHHHHHhCCC-----CCCCc
Confidence 0 12459999999999999999875 6999999999997764321 12344444544332 22377
Q ss_pred eHHHHHHHHHHhhcCC--CCCCcEEEecCccC
Q 020266 232 NVKDVANAHIQAFEVP--SANGRYCLVERVSH 261 (328)
Q Consensus 232 ~v~D~a~~~~~~~~~~--~~~g~~~~~~~~~~ 261 (328)
.++|+|+++.+++... ...|.....++.+|
T Consensus 208 ~p~dva~~v~fL~S~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 208 RPEEVAQAALFLLSEESAYITGQALYVDGGRS 239 (241)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhcchhCCCcCceEEeCCCcc
Confidence 9999999999999743 34675555554443
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.90 E-value=3.3e-23 Score=172.55 Aligned_cols=198 Identities=15% Similarity=0.117 Sum_probs=152.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCe-------EEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYT-------VKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~-------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
+.||||||++.||+++++.|+++|++ |+..+|+.++.+.+....... +.++.++.+|++|++++.++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~ 79 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI 79 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHH
Confidence 35899999999999999999999987 888899877766655544332 3578899999999998877765
Q ss_pred -----CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 -----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 -----~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|++|||||... ....+.+...+++|+.|+.++++++.+.+ +.+++|++||.++..+.+
T Consensus 80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~------- 152 (240)
T d2bd0a1 80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFR------- 152 (240)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-------
T ss_pred HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCC-------
Confidence 6899999998632 23345677899999999999988876642 446899999987655321
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+.+.++.+ +|+++++|.||.+-.|...... .
T Consensus 153 ---------------~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~-----------------~ 200 (240)
T d2bd0a1 153 ---------------HSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD-----------------D 200 (240)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC-----------------S
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcC-----------------H
Confidence 2356999999999999999886 4899999999999877432211 1
Q ss_pred CCCccceeHHHHHHHHHHhhcCCC
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVPS 248 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~~ 248 (328)
.....+..++|+|+++++++.++.
T Consensus 201 ~~~~~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 201 EMQALMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp TTGGGSBCHHHHHHHHHHHHTSCT
T ss_pred hhHhcCCCHHHHHHHHHHHHcCCc
Confidence 111235689999999999998754
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.90 E-value=4.2e-23 Score=174.75 Aligned_cols=227 Identities=16% Similarity=0.162 Sum_probs=158.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccC-CCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|+.++.+.+...+.... ...++.++++|++++++++++++
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999877666555544332 33579999999999998887775
Q ss_pred ---CccEEEEccCCCCC---------CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhh-hccCCCCCCC
Q 020266 81 ---GCDGVCHTASPFYH---------DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAA-VLNTGKPRTP 145 (328)
Q Consensus 81 ---~~d~vih~a~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~-~~~~~~~~~~ 145 (328)
++|++|||||.... ...+.|+..+++|+.++.++.+++.+.. +..++|.++|+.+ ..+.+
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~~----- 156 (264)
T d1spxa_ 82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATP----- 156 (264)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCCT-----
T ss_pred HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccccCC-----
Confidence 68999999986311 1223466889999999999998877641 2246777777443 22111
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC------cchHHHHHHH
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL------NTSAAAVLSL 216 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~------~~~~~~~~~~ 216 (328)
....|+.+|.+.+.+++.++.+. |+++++|.||.|-.+...... .........+
T Consensus 157 -----------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 219 (264)
T d1spxa_ 157 -----------------DFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATM 219 (264)
T ss_dssp -----------------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHH
T ss_pred -----------------CchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHH
Confidence 12459999999999999998864 899999999999876432110 0111222222
Q ss_pred HhCCCCCCCCCccceeHHHHHHHHHHhhcCC---CCCCcEEEecCc
Q 020266 217 IKGAQTYPNVTFGWVNVKDVANAHIQAFEVP---SANGRYCLVERV 259 (328)
Q Consensus 217 ~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~---~~~g~~~~~~~~ 259 (328)
.... | ...+..++|+|+++++++.++ ...|.-...++.
T Consensus 220 ~~~~---P--l~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG 260 (264)
T d1spxa_ 220 KECV---P--AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGG 260 (264)
T ss_dssp HHHC---T--TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred HhcC---C--CCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCC
Confidence 2211 1 234778999999999998632 246755444433
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.3e-23 Score=177.12 Aligned_cols=229 Identities=14% Similarity=0.091 Sum_probs=163.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhcc---CCCCcEEEEEccCCCcCchHHhhC--
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD---GASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|+.++.+.....+... ....++..+.+|++|++++.++++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999887766554433221 124578999999999998887765
Q ss_pred -----CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 -----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 -----~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
++|++||||+... ....+.+...+++|+.++.++.+++.+.+ +..++|.+||.+ ..+.+
T Consensus 89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~-~~~~~------- 160 (297)
T d1yxma1 89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFP------- 160 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCCT-------
T ss_pred HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccc-ccccc-------
Confidence 6899999998632 23345677889999999999998876542 335688877642 22111
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcch-HHHHHHHHhCCCCC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTS-AAAVLSLIKGAQTY 223 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~ 223 (328)
....|+.+|.+.+.+++.++.+. |+++.+|.||.|..+......... ..+....... .
T Consensus 161 ---------------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~---~ 222 (297)
T d1yxma1 161 ---------------LAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQK---I 222 (297)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGG---S
T ss_pred ---------------ccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhc---C
Confidence 12459999999999999999874 899999999999877432211111 0111111111 1
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEecCccCH
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVERVSHY 262 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~~~~~ 262 (328)
| ...+..++|+|.++++++... ...|.-..+++..|+
T Consensus 223 p--lgR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~sl 261 (297)
T d1yxma1 223 P--AKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 261 (297)
T ss_dssp T--TSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred C--CCCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcChhh
Confidence 1 234778999999999999643 346755555555554
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.89 E-value=1.8e-22 Score=171.55 Aligned_cols=227 Identities=15% Similarity=0.184 Sum_probs=160.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccC-CCCcEEEEEccCCCcCchHHhhC-----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+++|+++||||++.||+++++.|+++|++|++.+|+.++.+.+...+.... ...++..+.+|++|+++++++++
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999998777666555444332 23578999999999998877765
Q ss_pred --CccEEEEccCCCCC--C-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc
Q 020266 81 --GCDGVCHTASPFYH--D-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV 148 (328)
Q Consensus 81 --~~d~vih~a~~~~~--~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~ 148 (328)
++|++|||||.... . ..+.+...+++|+.++..+.+++.+. .+.++++++||.+...+.+
T Consensus 82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~-------- 153 (274)
T d1xhla_ 82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHS-------- 153 (274)
T ss_dssp HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCT--------
T ss_pred cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccCC--------
Confidence 68999999985211 1 12346788999999999998877653 2445788887755433211
Q ss_pred ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCC--cchHHHHHHHHhCC-CC
Q 020266 149 VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIKGA-QT 222 (328)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~-~~ 222 (328)
....|+.+|.+.+.+++.++.++ |++++.|.||.+-.|...... .............. ..
T Consensus 154 --------------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (274)
T d1xhla_ 154 --------------GYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKEC 219 (274)
T ss_dssp --------------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT
T ss_pred --------------CCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcC
Confidence 12459999999999999998864 899999999999876321111 11112222222221 11
Q ss_pred CCCCCccceeHHHHHHHHHHhhcC---CCCCCcEEEec
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEV---PSANGRYCLVE 257 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~---~~~~g~~~~~~ 257 (328)
.| ...+..++|+|.++++++.. ....|.....+
T Consensus 220 iP--lgR~g~pediA~~v~fL~S~d~s~~itG~~i~vD 255 (274)
T d1xhla_ 220 IP--VGHCGKPEEIANIIVFLADRNLSSYIIGQSIVAD 255 (274)
T ss_dssp CT--TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEES
T ss_pred CC--CCCCcCHHHHHHHHHHHcCCccccCccCcEEEeC
Confidence 22 23367999999999999853 22477544443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.89 E-value=3.2e-22 Score=169.88 Aligned_cols=230 Identities=17% Similarity=0.191 Sum_probs=159.7
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccC-CCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-ASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.+++|+++||||++.||+++++.|+++|++|++.+|++++.+.+...+.... ...++..+++|++|+++++++++
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999998877666555544332 33578999999999998887775
Q ss_pred ---CccEEEEccCCCCCCC---------CCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecch-hhhccCCCCCCC
Q 020266 81 ---GCDGVCHTASPFYHDA---------KDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSM-AAVLNTGKPRTP 145 (328)
Q Consensus 81 ---~~d~vih~a~~~~~~~---------~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~-~~~~~~~~~~~~ 145 (328)
++|++|||||...... .+.+...+++|+.++.++.+++.+.+ +...+|.++|+ +...+.+
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~~----- 156 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQP----- 156 (272)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCC-----
T ss_pred HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccCCC-----
Confidence 6899999998743211 11356788999999999998876641 22456666663 3222111
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCC--cchHHHHHHHHh-C
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTL--NTSAAAVLSLIK-G 219 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~-~ 219 (328)
....|+.+|.+.+.+++.++.+ +|+++++|.||.|-.+...... ............ .
T Consensus 157 -----------------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~ 219 (272)
T d1xkqa_ 157 -----------------DFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASH 219 (272)
T ss_dssp -----------------SSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHC
T ss_pred -----------------CcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHH
Confidence 1355999999999999999876 4899999999999776321111 011111122221 1
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcCC---CCCCcEEEecCc
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEVP---SANGRYCLVERV 259 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~~---~~~g~~~~~~~~ 259 (328)
....| ...+..++|+|+++++++... ...|....+++.
T Consensus 220 ~~~~P--lgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG 260 (272)
T d1xkqa_ 220 KECIP--IGAAGKPEHIANIILFLADRNLSFYILGQSIVADGG 260 (272)
T ss_dssp TTTCT--TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred hcCCC--CCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcC
Confidence 11112 234779999999999998632 257755444433
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.89 E-value=1.4e-22 Score=171.00 Aligned_cols=229 Identities=14% Similarity=0.164 Sum_probs=161.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
++++|++|||||++.||+++++.|+++|++|++.+|+.++.......+... ...++.++++|++|++++.++++
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~-~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE-FGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH-HTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH-hCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999988776644433221 13578899999999998887775
Q ss_pred --CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcC----CCccEEEEecchhhhccCCCCCCCCccc
Q 020266 81 --GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKF----PSIKRVVLTSSMAAVLNTGKPRTPDVVV 149 (328)
Q Consensus 81 --~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 149 (328)
++|++||||+... ....+.+++.+++|+.++.++.+++.+. ...++++.+||........ ..+
T Consensus 85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~------~~~ 158 (260)
T d1h5qa_ 85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQ------SSL 158 (260)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCE------EET
T ss_pred hCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccc------ccc
Confidence 6899999998632 2234457788999999999888766542 2445677777754322100 000
Q ss_pred cCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 150 DETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 150 ~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
. +......|+.+|.+.+.+++.++.+ +|+++.+|.||.+-.+..... ............|
T Consensus 159 ~---------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~---~~~~~~~~~~~~p----- 221 (260)
T d1h5qa_ 159 N---------GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM---DKKIRDHQASNIP----- 221 (260)
T ss_dssp T---------EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS---CHHHHHHHHHTCT-----
T ss_pred c---------cCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhcc---CHHHHHHHHhcCC-----
Confidence 0 0012345999999999999999886 489999999999977643221 1233344444322
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCCcEEEecC
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANGRYCLVER 258 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~ 258 (328)
...+..++|+|.++++++.+.. ..|....+++
T Consensus 222 l~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG 255 (260)
T d1h5qa_ 222 LNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDG 255 (260)
T ss_dssp TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred CCCCcCHHHHHHHHHHHhcchhCCCcCceEEECC
Confidence 2237789999999999986432 4675544443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.89 E-value=1.8e-22 Score=173.80 Aligned_cols=229 Identities=16% Similarity=0.105 Sum_probs=158.7
Q ss_pred CcccccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
||+...+++|+++||||+|.||+++++.|+++|++|++.+|+.++.......+... ...++..+.+|+++++++.++++
T Consensus 17 ~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~-~g~~~~~~~~D~~~~~~v~~~~~ 95 (294)
T d1w6ua_ 17 MLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ-TGNKVHAIQCDVRDPDMVQNTVS 95 (294)
T ss_dssp CSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh-cCCceEEEEecccChHHHHHHhh
Confidence 56666788999999999999999999999999999999999887665544333222 13578899999999998777664
Q ss_pred -------CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHh----cCCCccEEEEecchhhhccCCCCCC
Q 020266 81 -------GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCA----KFPSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 81 -------~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
++|++||+||..... ....+...+.+|..+...+...+. .......++.+||.+...+.+
T Consensus 96 ~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~---- 171 (294)
T d1w6ua_ 96 ELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSG---- 171 (294)
T ss_dssp HHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCT----
T ss_pred hhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhccc----
Confidence 689999999974322 122344667778888777655433 222445678888865444211
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
....|+.+|.+.+.+++.++.++ |+++.+|.||.+-.+....................|
T Consensus 172 ------------------~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~p 233 (294)
T d1w6ua_ 172 ------------------FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP 233 (294)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT
T ss_pred ------------------ccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCC
Confidence 12459999999999999998764 899999999999887533222222233344444322
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEec
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
...+..++|+|.++.+++.... ..|.-..++
T Consensus 234 -----l~R~~~pediA~~v~fL~sd~s~~itG~~i~vD 266 (294)
T d1w6ua_ 234 -----CGRLGTVEELANLAAFLCSDYASWINGAVIKFD 266 (294)
T ss_dssp -----TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred -----CCCCCCHHHHHHHHHHHhCchhcCCCCcEEEEC
Confidence 2347789999999999997532 467444333
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.2e-23 Score=171.12 Aligned_cols=224 Identities=14% Similarity=0.092 Sum_probs=160.2
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
|..+++|++|||||++.||+++++.|+++|++|++.+|++++.+.+.+ ..+++...+|+.+.+.++...+
T Consensus 1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~ 73 (245)
T d2ag5a1 1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK-------YPGIQTRVLDVTKKKQIDQFANEVE 73 (245)
T ss_dssp CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG-------STTEEEEECCTTCHHHHHHHHHHCS
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-------ccCCceeeeeccccccccccccccc
Confidence 445789999999999999999999999999999999998655444322 2467888889887766555443
Q ss_pred CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhh-ccCCCCCCCCccccC
Q 020266 81 GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAV-LNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~-~~~~~~~~~~~~~~E 151 (328)
++|++||+||.... ...+.+...+++|+.++..+.+++.+. .+..++|++||..+. .+.
T Consensus 74 ~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~------------ 141 (245)
T d2ag5a1 74 RLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGV------------ 141 (245)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCC------------
T ss_pred cceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCCc------------
Confidence 78999999987332 234567788999999999998877653 144689999986432 210
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCC---CcchHHHHHHHHhCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPT---LNTSAAAVLSLIKGAQTYPN 225 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~ 225 (328)
.....|+.+|.+.+.+++.++.++ |+++.+|.||.+-+|..... ..............-
T Consensus 142 ----------~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~----- 206 (245)
T d2ag5a1 142 ----------VNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ----- 206 (245)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTC-----
T ss_pred ----------cchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcC-----
Confidence 023569999999999999999874 89999999999987632100 000112223333322
Q ss_pred CCccceeHHHHHHHHHHhhcCC--CCCCcEEEecCccC
Q 020266 226 VTFGWVNVKDVANAHIQAFEVP--SANGRYCLVERVSH 261 (328)
Q Consensus 226 ~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~~~~ 261 (328)
....+..++|+|+++.+++... ...|....+++.+|
T Consensus 207 pl~R~~~pedva~~v~fL~s~~s~~iTG~~i~VDGG~s 244 (245)
T d2ag5a1 207 KTGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGWS 244 (245)
T ss_dssp TTSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred CCCCCcCHHHHHHHHHHHhChhhCCCcCceEEeCCCcC
Confidence 2334889999999999999753 34676555554444
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=2.2e-22 Score=167.17 Aligned_cols=212 Identities=13% Similarity=0.060 Sum_probs=150.1
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCc-CchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE-GSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~d~v 85 (328)
+++|++|||||++.||+++++.|+++|++|++.+|+++..+. ...+++.+|+++. +.+.+.+.++|++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~-----------~~~~~~~~Dv~~~~~~~~~~~g~iD~l 70 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR-----------SGHRYVVCDLRKDLDLLFEKVKEVDIL 70 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-----------TCSEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh-----------cCCcEEEcchHHHHHHHHHHhCCCcEE
Confidence 679999999999999999999999999999999998543322 2456788999864 2333444579999
Q ss_pred EEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020266 86 CHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDP 157 (328)
Q Consensus 86 ih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 157 (328)
|||||... ....+.+.+.+++|+.++.++.+++.+.+ +..++|++||.....+.+
T Consensus 71 VnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~----------------- 133 (234)
T d1o5ia_ 71 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIE----------------- 133 (234)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-----------------
T ss_pred EecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccccccccccccccccc-----------------
Confidence 99998632 22344567889999999998888775431 446899999975443211
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHH
Q 020266 158 EVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVK 234 (328)
Q Consensus 158 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 234 (328)
....|+.+|.+.+.+++.++.+. |+++.+|.||.+-.+...... .....+..... .....+..++
T Consensus 134 -----~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~---~~~~~~~~~~~----~pl~R~~~pe 201 (234)
T d1o5ia_ 134 -----NLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELL---SEEKKKQVESQ----IPMRRMAKPE 201 (234)
T ss_dssp -----TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHS---CHHHHHHHHTT----STTSSCBCHH
T ss_pred -----ccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhc---CHHHHHHHHhc----CCCCCCcCHH
Confidence 12459999999999999998864 899999999998776422111 11122222222 1123478999
Q ss_pred HHHHHHHHhhcCC--CCCCcEEEecC
Q 020266 235 DVANAHIQAFEVP--SANGRYCLVER 258 (328)
Q Consensus 235 D~a~~~~~~~~~~--~~~g~~~~~~~ 258 (328)
|+|.++++++... ...|.....++
T Consensus 202 diA~~v~fL~S~~s~~itG~~i~vDG 227 (234)
T d1o5ia_ 202 EIASVVAFLCSEKASYLTGQTIVVDG 227 (234)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHHHHHHHHhChhhcCCcCcEEEECc
Confidence 9999999998643 23675544443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.5e-23 Score=173.39 Aligned_cols=200 Identities=13% Similarity=0.060 Sum_probs=153.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+.++|+++||||++.||+++++.|+++|++|++.+|+.++.+.+....... +.++..+.+|++|++++.++++
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 356999999999999999999999999999999999988777766655443 3578999999999998887665
Q ss_pred --CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 --GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 --~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
.+|++|||||..... ..+.+++.+++|+.|+.++++++.+. .+.+++|++||.++..+.+
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~---------- 151 (244)
T d1yb1a_ 82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVP---------- 151 (244)
T ss_dssp TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHH----------
T ss_pred cCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCC----------
Confidence 689999999974322 23346688999999999998876553 2557899999976544211
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh------cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCC
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE------KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYP 224 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~------~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (328)
....|+.||.+.+.+.+.++.+ .|++++++.||.|-.+..... . . .
T Consensus 152 ------------~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~---~----~---~------ 203 (244)
T d1yb1a_ 152 ------------FLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP---S----T---S------ 203 (244)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT---H----H---H------
T ss_pred ------------CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCc---C----c---c------
Confidence 2355999999999999999875 379999999999877643211 0 0 0
Q ss_pred CCCccceeHHHHHHHHHHhhcCC
Q 020266 225 NVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 225 ~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
....+.++|+|+.+...+...
T Consensus 204 --~~~~~~pe~va~~i~~~~~~~ 224 (244)
T d1yb1a_ 204 --LGPTLEPEEVVNRLMHGILTE 224 (244)
T ss_dssp --HCCCCCHHHHHHHHHHHHHTT
T ss_pred --ccCCCCHHHHHHHHHHHHhcC
Confidence 112457899999999887754
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.88 E-value=1.9e-22 Score=171.64 Aligned_cols=225 Identities=15% Similarity=0.134 Sum_probs=157.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++|+++||||++.||+++++.|+++|++|++.+|+.++...+.... ..++..+.+|++++++++++++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 77 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH-----GDNVLGIVGDVRSLEDQKQAASRCVARF 77 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeeEEecccccHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999876554433332 2478999999999998877764
Q ss_pred -CccEEEEccCCCCCC------CCC----cchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCc
Q 020266 81 -GCDGVCHTASPFYHD------AKD----PQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDV 147 (328)
Q Consensus 81 -~~d~vih~a~~~~~~------~~~----~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 147 (328)
.+|++|||||..... ..+ .+...+++|+.++.++.+++.+.+ +..++|++||.++..+.+
T Consensus 78 g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~~~~------- 150 (276)
T d1bdba_ 78 GKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFYPNG------- 150 (276)
T ss_dssp SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSTTS-------
T ss_pred CCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhccCCC-------
Confidence 689999999863211 111 266889999999999988776531 225799999976554211
Q ss_pred cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc--CccEEEEcCCcccCCCCCCCCcc------hHHHHHHHHhC
Q 020266 148 VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK--SIDLVTINPAMVIGPLLQPTLNT------SAAAVLSLIKG 219 (328)
Q Consensus 148 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~------~~~~~~~~~~~ 219 (328)
....|+.+|.+.+.+++.++.+. ++++.+|.||.|-.+...+.... ...-+.+....
T Consensus 151 ---------------~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (276)
T d1bdba_ 151 ---------------GGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKS 215 (276)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTT
T ss_pred ---------------CCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHh
Confidence 12459999999999999998874 58999999999977643221100 00111222222
Q ss_pred CCCCCCCCccceeHHHHHHHHHHhhcC---CCCCCcEEEecCccCH
Q 020266 220 AQTYPNVTFGWVNVKDVANAHIQAFEV---PSANGRYCLVERVSHY 262 (328)
Q Consensus 220 ~~~~~~~~~~~v~v~D~a~~~~~~~~~---~~~~g~~~~~~~~~~~ 262 (328)
. .| ...+..++|+|.++++++.. ....|....+++.+++
T Consensus 216 ~--~P--lgR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~~~ 257 (276)
T d1bdba_ 216 V--LP--IGRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGGLGV 257 (276)
T ss_dssp T--CT--TSSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSGGG
T ss_pred c--CC--CCCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcChhh
Confidence 1 11 22367899999999988752 2356755444444443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.87 E-value=1.2e-21 Score=165.34 Aligned_cols=221 Identities=20% Similarity=0.138 Sum_probs=156.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
++.+|++|||||++.||+++++.|+++|++|++..|+..+ .+.....+... ..++..+.+|++|+++++++++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc--CCCceEecCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999987765443 44444444333 3578899999999998887765
Q ss_pred ---CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 ---GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|++||+||.... ...+.++..+++|+.++.++++++.+++ +.++++.++|.++... +
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~-~----------- 148 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT-G----------- 148 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC-S-----------
T ss_pred HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc-C-----------
Confidence 68999999997332 2344566889999999999999887752 2346777777543331 0
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCC---------CCCCCcchH-HHHHHHHh
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPL---------LQPTLNTSA-AAVLSLIK 218 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~---------~~~~~~~~~-~~~~~~~~ 218 (328)
. .....|+.+|.+.+.+++.++.++ |+++.+|.||.+-.+. ......... .+...+..
T Consensus 149 ----~-----~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (259)
T d1ja9a_ 149 ----I-----PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLAN 219 (259)
T ss_dssp ----C-----CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHH
T ss_pred ----C-----CCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHh
Confidence 0 012459999999999999998864 8999999999987541 011111122 23333333
Q ss_pred CCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEE
Q 020266 219 GAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (328)
Q Consensus 219 ~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~ 254 (328)
..| ...+..++|+|+++++++.... ..|...
T Consensus 220 ~~p-----l~R~g~p~eVa~~v~fL~S~~a~~itG~~i 252 (259)
T d1ja9a_ 220 MNP-----LKRIGYPADIGRAVSALCQEESEWINGQVI 252 (259)
T ss_dssp TST-----TSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred CCC-----CCCCcCHHHHHHHHHHHhCchhcCCcCceE
Confidence 322 3357899999999999997543 366443
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=8.9e-22 Score=166.15 Aligned_cols=216 Identities=16% Similarity=0.070 Sum_probs=156.6
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHH---CCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLS---RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 80 (328)
..+++|+++||||++.||+++++.|++ +|++|++.+|+.++.+.+...+.......++.++++|+++++++.++++
T Consensus 2 ~~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 356789999999999999999999986 6999999999888777766655544445689999999999998877653
Q ss_pred ----------CccEEEEccCCCCC--------CCCCcchhhhhHHHHHHHHHHHHHhcCCC-----ccEEEEecchhhhc
Q 020266 81 ----------GCDGVCHTASPFYH--------DAKDPQVELLDPAVKGTLNVLNSCAKFPS-----IKRVVLTSSMAAVL 137 (328)
Q Consensus 81 ----------~~d~vih~a~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-----~~~~v~~SS~~~~~ 137 (328)
..|++||+||.... ...+.+...+++|+.++.++.+++.+... .+++|++||.++..
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 35899999986321 11234667899999999999998876521 35899999986654
Q ss_pred cCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh-cCccEEEEcCCcccCCCCCCCC--cchHHHHH
Q 020266 138 NTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-KSIDLVTINPAMVIGPLLQPTL--NTSAAAVL 214 (328)
Q Consensus 138 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~ 214 (328)
+.+ ....|+.||.+.+.+.+.++.+ +|+++++|.||.|-.+...... ........
T Consensus 162 ~~~----------------------~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~ 219 (259)
T d1oaaa_ 162 PYK----------------------GWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRS 219 (259)
T ss_dssp CCT----------------------TCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHH
T ss_pred CCc----------------------cchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHH
Confidence 211 2355999999999999999887 4899999999999876311000 00011111
Q ss_pred HHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC
Q 020266 215 SLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 215 ~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~ 247 (328)
...... + ...+..++|+|++++.++...
T Consensus 220 ~~~~~~---~--~~r~~~p~evA~~i~~ll~~~ 247 (259)
T d1oaaa_ 220 KLQKLK---S--DGALVDCGTSAQKLLGLLQKD 247 (259)
T ss_dssp HHHHHH---H--TTCSBCHHHHHHHHHHHHHHC
T ss_pred HHHhcC---C--CCCCCCHHHHHHHHHHHhhhc
Confidence 111100 0 112578999999999888643
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.87 E-value=6.9e-22 Score=165.95 Aligned_cols=216 Identities=12% Similarity=-0.004 Sum_probs=155.6
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-------Ccc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-------GCD 83 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 83 (328)
+++||||++.||+++++.|+++|++|++.+|+.+..+.+..... .+..+|+++.++++++++ ++|
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~--------~~~~~dv~~~~~~~~~~~~~~~~~G~iD 73 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAE--------TYPQLKPMSEQEPAELIEAVTSAYGQVD 73 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHH--------HCTTSEECCCCSHHHHHHHHHHHHSCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhC--------cEEEeccCCHHHHHHHHHHHHHHcCCCC
Confidence 68999999999999999999999999999998877666544322 234589999988877765 689
Q ss_pred EEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020266 84 GVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWF 154 (328)
Q Consensus 84 ~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~ 154 (328)
++|||||.... ...+.+...+++|+.++.++++++.+.+ +.+++|++||.+...+.+
T Consensus 74 iLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~-------------- 139 (252)
T d1zmta1 74 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWK-------------- 139 (252)
T ss_dssp EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCT--------------
T ss_pred EEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccc--------------
Confidence 99999985321 2234566788999999999988765531 447899999976554211
Q ss_pred CCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcc-----hHHHHHHHHhCCCCCCCC
Q 020266 155 SDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNT-----SAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 155 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.+|.+.+.+.+.++.+. |+++.+|.||.+-.+........ .......+.+..|
T Consensus 140 --------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~p----- 206 (252)
T d1zmta1 140 --------ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA----- 206 (252)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS-----
T ss_pred --------cccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCC-----
Confidence 12459999999999999998864 89999999999988754332211 1223333333222
Q ss_pred CccceeHHHHHHHHHHhhcCCC--CCCcEEEecCccC
Q 020266 227 TFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~~ 261 (328)
...+..++|+|.++++++.... ..|.....++.++
T Consensus 207 l~R~g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG~~ 243 (252)
T d1zmta1 207 LQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFP 243 (252)
T ss_dssp SSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTCC
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCCce
Confidence 2237799999999999997543 3675544444333
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.87 E-value=3.7e-21 Score=163.44 Aligned_cols=225 Identities=18% Similarity=0.123 Sum_probs=158.3
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC-hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND-PKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.++++|++|||||++.||+++++.|+++|++|++.+|+.++ .+.+...+... ..++.++.+|++|++++.+.++
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh--CCceeeEeCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999886543 33333333222 3578899999999998877765
Q ss_pred ----CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCcccc
Q 020266 81 ----GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVD 150 (328)
Q Consensus 81 ----~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~ 150 (328)
++|++||+++... ....+.+...+++|+.++..+.+++.+.+ ..++++.++|+....+..
T Consensus 92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~~---------- 161 (272)
T d1g0oa_ 92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAV---------- 161 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSC----------
T ss_pred HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccccc----------
Confidence 6899999998632 23344566889999999999999887752 335788888864333111
Q ss_pred CCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCC--------CCCCcchHHHH-H-HHH
Q 020266 151 ETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLL--------QPTLNTSAAAV-L-SLI 217 (328)
Q Consensus 151 E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~--------~~~~~~~~~~~-~-~~~ 217 (328)
.....|+.+|.+.+.+++.++.+ +|+++++|.||.+-.+.. ........... . ...
T Consensus 162 -----------~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (272)
T d1g0oa_ 162 -----------PKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAV 230 (272)
T ss_dssp -----------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHH
T ss_pred -----------cchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHH
Confidence 02245999999999999999886 489999999999976420 00001111111 1 122
Q ss_pred hCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEec
Q 020266 218 KGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVE 257 (328)
Q Consensus 218 ~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~ 257 (328)
...| ...+..++|+|.++++++.... ..|.....+
T Consensus 231 ~~~P-----lgR~~~peevA~~v~fL~s~~s~~itG~~i~vD 267 (272)
T d1g0oa_ 231 QWSP-----LRRVGLPIDIARVVCFLASNDGGWVTGKVIGID 267 (272)
T ss_dssp HSCT-----TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred ccCC-----CCCCcCHHHHHHHHHHHhCchhcCccCceEeEC
Confidence 2221 2247899999999999997533 367544443
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.86 E-value=4.9e-21 Score=161.67 Aligned_cols=207 Identities=15% Similarity=0.130 Sum_probs=148.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhC------
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+++||||||+|.||+++++.|+++|+ +|+++.|+..+.+......... ....++.++.+|++|++++.++++
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~ 88 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDV 88 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccccc
Confidence 67999999999999999999999998 5777888654433333222211 123579999999999999888775
Q ss_pred CccEEEEccCCCCCC-----CCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020266 81 GCDGVCHTASPFYHD-----AKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFS 155 (328)
Q Consensus 81 ~~d~vih~a~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~ 155 (328)
.+|.|||+++..... ..+.+...+++|+.++.++.+++... +.+++|++||+++..|.+
T Consensus 89 ~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~SS~a~~~g~~--------------- 152 (259)
T d2fr1a1 89 PLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFSSFASAFGAP--------------- 152 (259)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTCCT---------------
T ss_pred cccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeecchhhccCCc---------------
Confidence 479999999874332 22335567889999999999988886 667999999988777432
Q ss_pred CccccccCCchhhhhhHHHHHHHHHHHHhcCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHH
Q 020266 156 DPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKD 235 (328)
Q Consensus 156 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 235 (328)
....|+.+|...+.+.+.++. .|+++++|.||.+.+++.... .....+. ......+.+++
T Consensus 153 -------~~~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~~~------~~~~~~~------~~G~~~~~~~~ 212 (259)
T d2fr1a1 153 -------GLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEG------PVADRFR------RHGVIEMPPET 212 (259)
T ss_dssp -------TCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC------------------CT------TTTEECBCHHH
T ss_pred -------ccHHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCccccc------hHHHHHH------hcCCCCCCHHH
Confidence 124499999999999888765 599999999999887653211 1111111 11134578999
Q ss_pred HHHHHHHhhcCCCCCC
Q 020266 236 VANAHIQAFEVPSANG 251 (328)
Q Consensus 236 ~a~~~~~~~~~~~~~g 251 (328)
+++++..++.++....
T Consensus 213 ~~~~l~~~l~~~~~~~ 228 (259)
T d2fr1a1 213 ACRALQNALDRAEVCP 228 (259)
T ss_dssp HHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHhCCCceE
Confidence 9999999998765443
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.4e-21 Score=163.76 Aligned_cols=221 Identities=19% Similarity=0.150 Sum_probs=150.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEe---cCCCChhhhhhhhhcc-CCCCcEEEEEccCCCcCchHHhhC----
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASV---RDPNDPKKTRHLLALD-GASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~---r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
.|.||||||++.||+++++.|+++|.+|+.+. |+.+....+....... ....++..+.+|++|++++.++++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 46789999999999999999999998765554 4444444443333222 234689999999999999888765
Q ss_pred -CccEEEEccCCCC-----CCCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 -GCDGVCHTASPFY-----HDAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 -~~d~vih~a~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|++||+|+... ....+.+...+++|+.|+.++.+++.+.+ +.+++|++||+++..+.+
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~----------- 150 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLP----------- 150 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCT-----------
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCCC-----------
Confidence 5799999998632 23345567889999999999988776531 457899999987665321
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHH-----------HHHHH
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAA-----------VLSLI 217 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~-----------~~~~~ 217 (328)
....|+.||.+.+.+.+.++.+ +|+++++|.||.|-.+............ +.+..
T Consensus 151 -----------~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (285)
T d1jtva_ 151 -----------FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYL 219 (285)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHH
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHH
Confidence 2355999999999999999886 4899999999999876433221111110 00100
Q ss_pred -hCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCCcEE
Q 020266 218 -KGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANGRYC 254 (328)
Q Consensus 218 -~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~ 254 (328)
...+ ........++|+|++++.++..++..-.|.
T Consensus 220 ~~~~~---~~~~~~~~PeeVA~~v~~~~~~~~p~~ry~ 254 (285)
T d1jtva_ 220 AHSKQ---VFREAAQNPEEVAEVFLTALRAPKPTLRYF 254 (285)
T ss_dssp HHHHH---HHHHHCBCHHHHHHHHHHHHHCSSCCSEEE
T ss_pred HHHhh---hhcccCCCHHHHHHHHHHHHhCCCCCeEEe
Confidence 0000 001125689999999999998765433453
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.86 E-value=1.1e-21 Score=168.43 Aligned_cols=209 Identities=17% Similarity=0.090 Sum_probs=148.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh------hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP------KKTRHLLALDGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
+++|+++||||++.||+++++.|+++|++|++.+|+.+.. ..+........ .....+.+|++|.++++++++
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~v~ 82 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIR--RRGGKAVANYDSVEAGEKLVK 82 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHH--HTTCEEEEECCCGGGHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHh--hcccccccccchHHHHHHHHH
Confidence 5799999999999999999999999999999998865421 11222211111 123456688888887766554
Q ss_pred -------CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC---CccEEEEecchhhhccCCCCCCC
Q 020266 81 -------GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP---SIKRVVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 -------~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~ 145 (328)
++|++|||||.... ...+.+...+++|+.++.++++++.+.+ +.+++|++||.++..+.+
T Consensus 83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~----- 157 (302)
T d1gz6a_ 83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF----- 157 (302)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----
T ss_pred HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCC-----
Confidence 68999999997432 2344577899999999999998876542 446999999988776422
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
....|+.+|.+.+.+.+.++.+. |+++++|.||.+-.+.... .
T Consensus 158 -----------------~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~----~------------- 203 (302)
T d1gz6a_ 158 -----------------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETV----M------------- 203 (302)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGG----S-------------
T ss_pred -----------------CcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhc----C-------------
Confidence 12559999999999999998874 8999999999764332111 0
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC-CCCC-cEEEec
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVP-SANG-RYCLVE 257 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~-~~~g-~~~~~~ 257 (328)
++....++.++|+|.++++++... ...| .+.+.+
T Consensus 204 -~~~~~~~~~PedvA~~v~fL~S~~a~itG~~i~vdG 239 (302)
T d1gz6a_ 204 -PEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGA 239 (302)
T ss_dssp -CHHHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEET
T ss_pred -cHhhHhcCCHHHHHHHHHHHcCCCcCCCCcEEEeCC
Confidence 111122456799999999988532 2355 444443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=5.3e-20 Score=154.24 Aligned_cols=212 Identities=18% Similarity=0.144 Sum_probs=152.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
+.|+|+++||||++.||++++++|+++|++|++.+|+.++.+.+...+ .........|+.+.++++....
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAKGK 76 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCCcccccccccccccccccccccccc
Confidence 468999999999999999999999999999999999988876654443 2467888899988776555443
Q ss_pred --CccEEEEccCCCCC-----------CCCCcchhhhhHHHHHHHHHHHHHhcC---------CCccEEEEecchhhhcc
Q 020266 81 --GCDGVCHTASPFYH-----------DAKDPQVELLDPAVKGTLNVLNSCAKF---------PSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----------~~~~~~~~~~~~N~~~~~~l~~~~~~~---------~~~~~~v~~SS~~~~~~ 138 (328)
..|.++++++.... ...+.+...+++|+.++.++.+++.+. .+.+++|++||.++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~ 156 (248)
T d2o23a1 77 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG 156 (248)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC
T ss_pred cccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccC
Confidence 57888888754211 112346678899999999999987542 13358999999877653
Q ss_pred CCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHH
Q 020266 139 TGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLS 215 (328)
Q Consensus 139 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~ 215 (328)
.+ ....|+.+|.+.+.+++.++.++ |+++++|.||.+..+..... .......
T Consensus 157 ~~----------------------~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~---~~~~~~~ 211 (248)
T d2o23a1 157 QV----------------------GQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSL---PEKVCNF 211 (248)
T ss_dssp CT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------CH
T ss_pred CC----------------------CchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcC---CHHHHHH
Confidence 21 12459999999999999999874 89999999999887653321 1112222
Q ss_pred HHhCCCCCCCCCccceeHHHHHHHHHHhhcCCCCCC
Q 020266 216 LIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPSANG 251 (328)
Q Consensus 216 ~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g 251 (328)
.....|.. ..+..++|+|+++.++++++...|
T Consensus 212 ~~~~~pl~----~R~g~peevA~~v~fL~s~~~itG 243 (248)
T d2o23a1 212 LASQVPFP----SRLGDPAEYAHLVQAIIENPFLNG 243 (248)
T ss_dssp HHHTCSSS----CSCBCHHHHHHHHHHHHHCTTCCS
T ss_pred HHhcCCCC----CCCcCHHHHHHHHHHHHhCCCCCc
Confidence 22222211 236789999999999988655556
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.84 E-value=1.6e-20 Score=157.36 Aligned_cols=171 Identities=16% Similarity=0.210 Sum_probs=130.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHH---CCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 9 GKVVCVTGASGYIASWLVKLLLS---RGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
||+||||||++.||+++++.|++ +|++|++.+|++++.+.+..+... ..++.++.+|++|+++++++++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 78 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN---HSNIHILEIDLRNFDAYDKLVADIEGV 78 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH---CTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc---CCcEEEEEEEeccHHHHHHHHhhhHHH
Confidence 68999999999999999999974 699999999999887766544332 3589999999999998776554
Q ss_pred ----CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC--------------CccEEEEecchhhh
Q 020266 81 ----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP--------------SIKRVVLTSSMAAV 136 (328)
Q Consensus 81 ----~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--------------~~~~~v~~SS~~~~ 136 (328)
++|++|||||.... ...+.+...+++|+.|+..+++++.+.. +..++|.+||....
T Consensus 79 ~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~ 158 (248)
T d1snya_ 79 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS 158 (248)
T ss_dssp HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred hhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence 58999999986322 1222355789999999999988765421 34689999996533
Q ss_pred ccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCC
Q 020266 137 LNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPL 201 (328)
Q Consensus 137 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~ 201 (328)
.+.. +.+ ....|+.||.+...+.+.++.+. |++++.+.||.|-.+.
T Consensus 159 ~~~~--------------~~~-----~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m 207 (248)
T d1snya_ 159 IQGN--------------TDG-----GMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDM 207 (248)
T ss_dssp STTC--------------CSC-----CCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTT
T ss_pred cCCC--------------CCC-----ChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCc
Confidence 2110 000 12459999999999999988754 7999999999987764
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.83 E-value=6.7e-20 Score=153.68 Aligned_cols=205 Identities=20% Similarity=0.192 Sum_probs=139.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
|++|+||||||++.||++++++|+++|+ .|++..|+.++...+... ...++.++.+|++|.++++++++
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~-----~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 75 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-----KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC-----CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh-----hCCceEEEEEecCCHHHHHHHHHHHHH
Confidence 4569999999999999999999999995 688888887665543322 24579999999999988776654
Q ss_pred -----CccEEEEccCCCCC------CCCCcchhhhhHHHHHHHHHHHHHhcCC--------------CccEEEEecchhh
Q 020266 81 -----GCDGVCHTASPFYH------DAKDPQVELLDPAVKGTLNVLNSCAKFP--------------SIKRVVLTSSMAA 135 (328)
Q Consensus 81 -----~~d~vih~a~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--------------~~~~~v~~SS~~~ 135 (328)
++|++|||||.... ...+.+.+.+++|+.|+.++++++.+.. ...++|.+|+...
T Consensus 76 ~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~ 155 (250)
T d1yo6a1 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred HhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccc
Confidence 38999999996321 1122355789999999999988875321 1246788887533
Q ss_pred hccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHH
Q 020266 136 VLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAA 212 (328)
Q Consensus 136 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~ 212 (328)
...... .. .... +...|+.||.+...+.+.++.+. |++++++.||.|-.+-...
T Consensus 156 ~~~~~~--------~~-~~~~------~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~-------- 212 (250)
T d1yo6a1 156 SITDNT--------SG-SAQF------PVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK-------- 212 (250)
T ss_dssp CSTTCC--------ST-TSSS------CBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC---------------
T ss_pred cccCCc--------cc-ccch------hHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCC--------
Confidence 221110 00 0000 12359999999999999998864 7999999999886642110
Q ss_pred HHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEE
Q 020266 213 VLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYC 254 (328)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~ 254 (328)
...+.+++.++.++..+.... ..|.|.
T Consensus 213 ---------------~~~~~~e~~a~~~~~~~~~~~~~~sG~f~ 241 (250)
T d1yo6a1 213 ---------------NAALTVEQSTAELISSFNKLDNSHNGRFF 241 (250)
T ss_dssp ---------------------HHHHHHHHHHHTTCCGGGTTCEE
T ss_pred ---------------CCCCCHHHHHHHHHHHHhcCCCCCCeEEE
Confidence 013467888888888887532 356554
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.6e-20 Score=158.46 Aligned_cols=210 Identities=17% Similarity=0.084 Sum_probs=145.3
Q ss_pred CCeE-EEECCccHHHHHHHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------
Q 020266 9 GKVV-CVTGASGYIASWLVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------ 80 (328)
Q Consensus 9 ~~~v-lVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 80 (328)
+|+| +||||++.||.++++.|++. |++|++.+|+.++.+.....+... ..++.++.+|++|.++++++++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 5666 89999999999999999985 899999999988776655554433 3578899999999998877664
Q ss_pred -CccEEEEccCCCCCCC-----CCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCC---------
Q 020266 81 -GCDGVCHTASPFYHDA-----KDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRT--------- 144 (328)
Q Consensus 81 -~~d~vih~a~~~~~~~-----~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~--------- 144 (328)
++|++|||||...... .+.+...+++|+.|+.++++++.+.+ ..+++|.+||++...+.+....
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~ 159 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 159 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhccc
Confidence 6899999999743221 22345678999999999999988752 2358999999776543210000
Q ss_pred --CCc----------cccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh-------cCccEEEEcCCcccCCCCCCC
Q 020266 145 --PDV----------VVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-------KSIDLVTINPAMVIGPLLQPT 205 (328)
Q Consensus 145 --~~~----------~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-------~~~~~~ilRp~~v~G~~~~~~ 205 (328)
... .......... ...+...|+.||.....+.+.++++ .+++++++.||.|-.+-..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~~ 237 (275)
T d1wmaa1 160 TITEEELVGLMNKFVEDTKKGVHQK--EGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK 237 (275)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCTTT--TTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCTT
T ss_pred ccchhhhccccccchhccccccccc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccCc
Confidence 000 0000000000 0012345999999998888776654 289999999999876532211
Q ss_pred CcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhc
Q 020266 206 LNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFE 245 (328)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~ 245 (328)
....++|.|+.++.++.
T Consensus 238 -----------------------~~~~pee~A~~~~~~a~ 254 (275)
T d1wmaa1 238 -----------------------ATKSPEEGAETPVYLAL 254 (275)
T ss_dssp -----------------------CSBCHHHHTHHHHHHHS
T ss_pred -----------------------ccCCHHHHHHHHHHHHc
Confidence 12368899998888764
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.7e-19 Score=150.79 Aligned_cols=224 Identities=14% Similarity=0.088 Sum_probs=155.5
Q ss_pred CCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC----
Q 020266 7 AAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD---- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 80 (328)
+++|++|||||+| .||+++++.|+++|++|++.+|+++......+.... ..+...+..|+.+..+....+.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ---LGSDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhh---cCCcceeecccchHHHHHHHHHHhhh
Confidence 5799999999999 799999999999999999999986655544443332 2356778889988776665553
Q ss_pred ---CccEEEEccCCCCCCC----------CCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCC
Q 020266 81 ---GCDGVCHTASPFYHDA----------KDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPD 146 (328)
Q Consensus 81 ---~~d~vih~a~~~~~~~----------~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~ 146 (328)
..|++||+|+...... .+.+...+.+|+.+...+.+++.... +.+.+|++||.++..+.+
T Consensus 80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~------ 153 (258)
T d1qsga_ 80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIP------ 153 (258)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT------
T ss_pred cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCC------
Confidence 5799999997632211 11233456678888888888877652 334688888876544211
Q ss_pred ccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCC
Q 020266 147 VVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY 223 (328)
Q Consensus 147 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
....|+.+|.+.+.+++.++.+. |+++++|+||.|..+..... ..............|
T Consensus 154 ----------------~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~-~~~~~~~~~~~~~~p-- 214 (258)
T d1qsga_ 154 ----------------NYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-KDFRKMLAHCEAVTP-- 214 (258)
T ss_dssp ----------------TTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-TTHHHHHHHHHHHST--
T ss_pred ----------------CcHHHHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccccc-chhhhHHHHHHhCCC--
Confidence 12559999999999999999875 79999999999988753321 112222233332222
Q ss_pred CCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEecCccC
Q 020266 224 PNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVERVSH 261 (328)
Q Consensus 224 ~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~~~~ 261 (328)
...+..++|+|.++.+++.+. ...|.....++.++
T Consensus 215 ---l~R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 215 ---IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFS 251 (258)
T ss_dssp ---TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred ---CCCCcCHHHHHHHHHHHhCchhcCccCceEEECcCHH
Confidence 223778999999999999653 34675555554444
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=8.1e-20 Score=154.75 Aligned_cols=203 Identities=16% Similarity=0.076 Sum_probs=147.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD----- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 80 (328)
++++|++|||||++.||+++++.|+++|++|++++|+.++.+.+....... .......+.+|+.+.+......+
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL-GAASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-TCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhh-hcccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999987766654433222 23567888899988776655443
Q ss_pred --CccEEEEccCCCCC-----CCCCcchhhhhHHHHHHHHHHHHHhcCC--CccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 --GCDGVCHTASPFYH-----DAKDPQVELLDPAVKGTLNVLNSCAKFP--SIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 --~~d~vih~a~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
.+|+++|+|+.... ...+.+...+++|+.++..+.+++.+.. +.+++|++||.++..+.+
T Consensus 90 ~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~p----------- 158 (269)
T d1xu9a_ 90 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYP----------- 158 (269)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCT-----------
T ss_pred hCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCCC-----------
Confidence 68999999986322 2233455778999999999988776541 236899999977655321
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHh-----cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE-----KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.||.+.+.+.+.++.+ .+++++.+.||.|-.+ +..+...+. .
T Consensus 159 -----------~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~-----------~~~~~~~~~-----~ 211 (269)
T d1xu9a_ 159 -----------MVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE-----------TAMKAVSGI-----V 211 (269)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH-----------HHHHHSCGG-----G
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc-----------HHHHhccCC-----c
Confidence 1356999999999999999876 3588999999988654 122222211 1
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.......+++|+.++......
T Consensus 212 ~~~~~~~e~~a~~i~~~~~~~ 232 (269)
T d1xu9a_ 212 HMQAAPKEECALEIIKGGALR 232 (269)
T ss_dssp GGGCBCHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHhhcC
Confidence 223567899999988877643
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=2e-19 Score=149.35 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=135.9
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-------hC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-------VD 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-------~~ 80 (328)
++|+||||||+|.||+++++.|+++|++|+++++...+... ....+..|..+.+....+ +.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEAS------------ASVIVKMTDSFTEQADQVTAEVGKLLG 68 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSS------------EEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------------ccceeecccCcHHHHHHHHHHHHHHhC
Confidence 47999999999999999999999999999999987654321 233445555544333222 22
Q ss_pred --CccEEEEccCCCCC---CC---CCcchhhhhHHHHHHHHHHHHHhcC-CCccEEEEecchhhhccCCCCCCCCccccC
Q 020266 81 --GCDGVCHTASPFYH---DA---KDPQVELLDPAVKGTLNVLNSCAKF-PSIKRVVLTSSMAAVLNTGKPRTPDVVVDE 151 (328)
Q Consensus 81 --~~d~vih~a~~~~~---~~---~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E 151 (328)
++|++|||||.... .. .+.++..+++|+.++.++.+++.+. .+.+++|++||.++..+.+
T Consensus 69 ~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~----------- 137 (236)
T d1dhra_ 69 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP----------- 137 (236)
T ss_dssp TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-----------
T ss_pred CCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCcc-----------
Confidence 48999999985221 11 2335567899999999999888764 2346899999976554211
Q ss_pred CCCCCccccccCCchhhhhhHHHHHHHHHHHHhc-----CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCC
Q 020266 152 TWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNV 226 (328)
Q Consensus 152 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (328)
....|+.||.+.+.+++.++.+. |+++++|.||.+..|. ....... ..
T Consensus 138 -----------~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~-----------~~~~~~~-----~~ 190 (236)
T d1dhra_ 138 -----------GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM-----------NRKSMPE-----AD 190 (236)
T ss_dssp -----------TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH-----------HHHHSTT-----SC
T ss_pred -----------CCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCc-----------chhhCcc-----ch
Confidence 13559999999999999998763 6999999999987752 1111111 11
Q ss_pred CccceeHHHHHHHHHHhhcCC
Q 020266 227 TFGWVNVKDVANAHIQAFEVP 247 (328)
Q Consensus 227 ~~~~v~v~D~a~~~~~~~~~~ 247 (328)
.-.+..++++|+.+..++...
T Consensus 191 ~~~~~~pe~va~~~~~l~s~~ 211 (236)
T d1dhra_ 191 FSSWTPLEFLVETFHDWITGN 211 (236)
T ss_dssp GGGSEEHHHHHHHHHHHHTTT
T ss_pred hhcCCCHHHHHHHHHHHhCCC
Confidence 234788999999999988753
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.79 E-value=2.8e-19 Score=148.45 Aligned_cols=187 Identities=18% Similarity=0.149 Sum_probs=132.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHH-------hh--C
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDS-------IV--D 80 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-------~~--~ 80 (328)
.|||||||+|.||+++++.|+++|++|++++|++.+... ....+.+|..+.+.... .+ .
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 70 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD------------SNILVDGNKNWTEQEQSILEQTASSLQGS 70 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS------------EEEECCTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhccc------------ccceeccccCchhHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999998654321 23445566664433222 22 2
Q ss_pred CccEEEEccCCCCC---CC---CCcchhhhhHHHHHHHHHHHHHhcCC-CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020266 81 GCDGVCHTASPFYH---DA---KDPQVELLDPAVKGTLNVLNSCAKFP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETW 153 (328)
Q Consensus 81 ~~d~vih~a~~~~~---~~---~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~ 153 (328)
++|++|||||.... .. .+.++..+++|+.++.++.+++.+.. +..++|++||.+...+.+
T Consensus 71 ~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~------------- 137 (235)
T d1ooea_ 71 QVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP------------- 137 (235)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-------------
T ss_pred CeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCcc-------------
Confidence 58999999986221 11 12354668999999999988887652 236899999987655321
Q ss_pred CCCccccccCCchhhhhhHHHHHHHHHHHHhc-----CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCc
Q 020266 154 FSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK-----SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF 228 (328)
Q Consensus 154 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
....|+.||.+.+.+++.++.++ +++++.+.||.+-.|. ....... ....
T Consensus 138 ---------~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~-----------~~~~~~~-----~~~~ 192 (235)
T d1ooea_ 138 ---------SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM-----------NRKWMPN-----ADHS 192 (235)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH-----------HHHHSTT-----CCGG
T ss_pred ---------cccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcc-----------hhhhCcC-----Cccc
Confidence 23569999999999999998764 6788899999875542 2222221 1233
Q ss_pred cceeHHHHHHHHHHhhcC
Q 020266 229 GWVNVKDVANAHIQAFEV 246 (328)
Q Consensus 229 ~~v~v~D~a~~~~~~~~~ 246 (328)
.++.++|+++.++..+..
T Consensus 193 ~~~~~~~va~~~~~~l~~ 210 (235)
T d1ooea_ 193 SWTPLSFISEHLLKWTTE 210 (235)
T ss_dssp GCBCHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHhcC
Confidence 578999999998765543
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=2.6e-18 Score=143.15 Aligned_cols=210 Identities=22% Similarity=0.157 Sum_probs=146.6
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC------Cc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD------GC 82 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~ 82 (328)
.|++|||||++.||+++++.|+++|++|++.+|+++.. +.....+|+++......+.. ..
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~--------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 66 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE--------------DLIYVEGDVTREEDVRRAVARAQEEAPL 66 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS--------------SSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc--------------cceEeeccccchhhhHHHHHhhhccccc
Confidence 48999999999999999999999999999999986542 45667899988766555443 34
Q ss_pred cEEEEccCCCC---------CCCCCcchhhhhHHHHHHHHHHHHHhcC---------CCccEEEEecchhhhccCCCCCC
Q 020266 83 DGVCHTASPFY---------HDAKDPQVELLDPAVKGTLNVLNSCAKF---------PSIKRVVLTSSMAAVLNTGKPRT 144 (328)
Q Consensus 83 d~vih~a~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---------~~~~~~v~~SS~~~~~~~~~~~~ 144 (328)
+.++++++... ....+.+...+++|+.+...++..+... .+..++|++||.++..+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~---- 142 (241)
T d1uaya_ 67 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQI---- 142 (241)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCT----
T ss_pred cchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCC----
Confidence 55566554311 1112234567889999888887765321 1346899999987666321
Q ss_pred CCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCC
Q 020266 145 PDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQ 221 (328)
Q Consensus 145 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
....|+.+|.+.+.+++.++.+ +|+++++|.||.+..+..... ............+
T Consensus 143 ------------------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~---~~~~~~~~~~~~~ 201 (241)
T d1uaya_ 143 ------------------GQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL---PEKAKASLAAQVP 201 (241)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS---CHHHHHHHHTTCC
T ss_pred ------------------CchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchh---hhhHHHHHHhcCC
Confidence 2355999999999999999986 489999999999987643221 1223333333333
Q ss_pred CCCCCCccceeHHHHHHHHHHhhcCCCCCCcEEEecCccC
Q 020266 222 TYPNVTFGWVNVKDVANAHIQAFEVPSANGRYCLVERVSH 261 (328)
Q Consensus 222 ~~~~~~~~~v~v~D~a~~~~~~~~~~~~~g~~~~~~~~~~ 261 (328)
.. ..+..++|+|+++.+++......|....+++.++
T Consensus 202 ~~----~R~g~pedvA~~v~fL~s~~~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 202 FP----PRLGRPEEYAALVLHILENPMLNGEVVRLDGALR 237 (241)
T ss_dssp SS----CSCCCHHHHHHHHHHHHHCTTCCSCEEEESTTCC
T ss_pred CC----CCCcCHHHHHHHHHHHHhCCCCCCCEEEECCccc
Confidence 21 2366899999999999986656785554444333
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.76 E-value=1.6e-17 Score=141.09 Aligned_cols=224 Identities=15% Similarity=0.116 Sum_probs=142.3
Q ss_pred cCCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC---
Q 020266 6 AAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 80 (328)
.+++|++|||||+| .||+++++.|+++|++|++.+|+++..+....+... .....++..|+++.+++.++++
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~---~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQE---LNSPYVYELDVSKEEHFKSLYNSVK 78 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhh---CCceeEeeecccchhhHHHHHHHHH
Confidence 36799999999887 799999999999999999999986544444333322 2356778999999888776664
Q ss_pred ----CccEEEEccCCCCCC------CCCcchhhhhHHHH----HHHHHHHHHhcCCCccE-EEEecchhhhccCCCCCCC
Q 020266 81 ----GCDGVCHTASPFYHD------AKDPQVELLDPAVK----GTLNVLNSCAKFPSIKR-VVLTSSMAAVLNTGKPRTP 145 (328)
Q Consensus 81 ----~~d~vih~a~~~~~~------~~~~~~~~~~~N~~----~~~~l~~~~~~~~~~~~-~v~~SS~~~~~~~~~~~~~ 145 (328)
.+|++||+++..... ....+ ..+..+.. +...+.....+..+... ++.+|+.+...+.+
T Consensus 79 ~~~g~id~lV~nag~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~----- 152 (274)
T d2pd4a1 79 KDLGSLDFIVHSVAFAPKEALEGSLLETSK-SAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMA----- 152 (274)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCH-HHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT-----
T ss_pred HHcCCCCeEEeecccccccccccccccccc-hhhhhhhccccccccccccccccccccCcceeeecccccccccc-----
Confidence 689999999863321 11112 22222222 33344444433323334 44444443222110
Q ss_pred CccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC
Q 020266 146 DVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 146 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
....|+.+|.+.+.+++..+.+. |+++.+|.||.+..+....... ............
T Consensus 153 -----------------~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~-~~~~~~~~~~~~-- 212 (274)
T d2pd4a1 153 -----------------HYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIAD-FRMILKWNEINA-- 212 (274)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTT-HHHHHHHHHHHS--
T ss_pred -----------------cchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCc-hHHHHHHHhhhh--
Confidence 23559999999999999988764 7999999999998875332211 111222222211
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEecCccC
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVSH 261 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~~ 261 (328)
....+..++|+|.++.+++.... ..|....++..++
T Consensus 213 ---p~~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~~ 250 (274)
T d2pd4a1 213 ---PLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYH 250 (274)
T ss_dssp ---TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ---hccCCcCHHHHHHHHHHHhChhhCCCcCceEEECCChh
Confidence 12347899999999999987532 4675555554443
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.75 E-value=3.8e-17 Score=139.33 Aligned_cols=221 Identities=15% Similarity=0.104 Sum_probs=143.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC-ChhhhhhhhhccCCCCcEEEE-----------------EccCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN-DPKKTRHLLALDGASERLQLF-----------------KANLL 70 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~Dl~ 70 (328)
+..++||||++.||+++++.|+++|++|++.+|+.. ..+.+...+.... ......+ .+|++
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~dv~ 80 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADGSAPVT 80 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhc-CCceEEEEeecccccccccccccccccCC
Confidence 457899999999999999999999999999877543 3333433333221 2234444 45577
Q ss_pred CcCchHHhhC-------CccEEEEccCCCCCCC-----CCc--------------chhhhhHHHHHHHHHHHHHhc----
Q 020266 71 EEGSFDSIVD-------GCDGVCHTASPFYHDA-----KDP--------------QVELLDPAVKGTLNVLNSCAK---- 120 (328)
Q Consensus 71 ~~~~~~~~~~-------~~d~vih~a~~~~~~~-----~~~--------------~~~~~~~N~~~~~~l~~~~~~---- 120 (328)
++++++++++ ++|++|||||...... .+. +..++.+|+.++..+.+++.+
T Consensus 81 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 160 (284)
T d1e7wa_ 81 LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 160 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence 7666666653 6899999999733211 111 113578899998888876532
Q ss_pred -----CCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEE
Q 020266 121 -----FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTI 192 (328)
Q Consensus 121 -----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~il 192 (328)
..+..++|.++|.....+.+ ....|+.+|.+.+.+++.++.++ |+++.+|
T Consensus 161 ~~~~~~~~~~~ii~~~s~~~~~~~~----------------------~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I 218 (284)
T d1e7wa_ 161 TPAKHRGTNYSIINMVDAMTNQPLL----------------------GYTIYTMAKGALEGLTRSAALELAPLQIRVNGV 218 (284)
T ss_dssp SCGGGSCSCEEEEEECCTTTTSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred hHHHhcCCCCcccccccccccCCcc----------------------ceeeeccccccchhhhHHHHHHhCCcccccccc
Confidence 11335788888864333111 12459999999999999998864 8999999
Q ss_pred cCCcccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEecCccC
Q 020266 193 NPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVERVSH 261 (328)
Q Consensus 193 Rp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~~~~ 261 (328)
.||.+-.... .............|.. ..+..++|+|.++++++... ...|....+++.+|
T Consensus 219 ~PG~t~~~~~-----~~~~~~~~~~~~~pl~----~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~s 280 (284)
T d1e7wa_ 219 GPGLSVLVDD-----MPPAVWEGHRSKVPLY----QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 280 (284)
T ss_dssp EESSBCCGGG-----SCHHHHHHHHTTCTTT----TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cccccccccc-----CCHHHHHHHHhcCCCC----CCCCCHHHHHHHHHHHhCchhcCccCCeEEECcChh
Confidence 9996432221 1223444444433321 23678999999999998643 24675555554444
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.72 E-value=1.8e-16 Score=136.04 Aligned_cols=225 Identities=12% Similarity=0.035 Sum_probs=141.3
Q ss_pred CCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhh---------ccCCCC---cEEEEEccC---
Q 020266 7 AAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA---------LDGASE---RLQLFKANL--- 69 (328)
Q Consensus 7 ~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---------~~~~~~---~~~~~~~Dl--- 69 (328)
+++|++|||||+| .||+++++.|+++|++|++.+|++........... ...... ++..+..++
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNP 85 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSG
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcccc
Confidence 6799999999987 89999999999999999999886432111111000 000001 122222222
Q ss_pred ---------------CCcCchHHhhC-------CccEEEEccCCCC-------CCCCCcchhhhhHHHHHHHHHHHHHhc
Q 020266 70 ---------------LEEGSFDSIVD-------GCDGVCHTASPFY-------HDAKDPQVELLDPAVKGTLNVLNSCAK 120 (328)
Q Consensus 70 ---------------~~~~~~~~~~~-------~~d~vih~a~~~~-------~~~~~~~~~~~~~N~~~~~~l~~~~~~ 120 (328)
.+...++++++ ++|++|||||... +...+.+...+++|+.+..++++++..
T Consensus 86 ~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~ 165 (297)
T d1d7oa_ 86 EDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLP 165 (297)
T ss_dssp GGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred ccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHHHH
Confidence 23333344333 6899999998632 122334667889999999999998877
Q ss_pred CC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh----cCccEEEEcCC
Q 020266 121 FP-SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPA 195 (328)
Q Consensus 121 ~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~ 195 (328)
.. ..+..+.+++.+...... + ....|..+|...+.+++.++.+ +|+++++|.||
T Consensus 166 ~~~~~g~~~~~~~~~~~~~~~-~--------------------~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG 224 (297)
T d1d7oa_ 166 IMNPGGASISLTYIASERIIP-G--------------------YGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAG 224 (297)
T ss_dssp GEEEEEEEEEEECGGGTSCCT-T--------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhhcCCcceeeeehhhccccc-c--------------------cccceecccccccccccccchhccccceEEecccccc
Confidence 52 223456666654332111 0 1245999999888888776553 58999999999
Q ss_pred cccCCCCCCCCcchHHHHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEecC
Q 020266 196 MVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVER 258 (328)
Q Consensus 196 ~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~ 258 (328)
.+..+..... .....+.......-| ...+..++|+|.++++++... ...|....+++
T Consensus 225 ~i~T~~~~~~-~~~~~~~~~~~~~~P-----lgR~~~peevA~~v~fL~S~~a~~itGq~i~vDG 283 (297)
T d1d7oa_ 225 PLGSRAAKAI-GFIDTMIEYSYNNAP-----IQKTLTADEVGNAAAFLVSPLASAITGATIYVDN 283 (297)
T ss_dssp CCBCCCSSCC-SHHHHHHHHHHHHSS-----SCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred cccchhhhhc-cCCHHHHHHHHhCCC-----CCCCCCHHHHHHHHHHHhCchhcCCcCceEEECc
Confidence 9988764432 222333444443322 224779999999999999643 34675544443
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.71 E-value=4e-17 Score=138.06 Aligned_cols=221 Identities=11% Similarity=0.082 Sum_probs=139.7
Q ss_pred cCCCCeEEEECCcc--HHHHHHHHHHHHCCCeEEEEecCCCChh-hhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 6 AAAGKVVCVTGASG--YIASWLVKLLLSRGYTVKASVRDPNDPK-KTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 6 ~~~~~~vlVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
.+++|++|||||+| .||+++++.|+++|++|++.+|+..+.. .+... ...+...+.+|+++++++.++++
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~-----~~~~~~~~~~dv~~~~~~~~~~~~v 77 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDR-----LPAKAPLLELDVQNEEHLASLAGRV 77 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTT-----SSSCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH-----cCCceeeEeeecccccccccccchh
Confidence 46799999999654 6999999999999999999999865432 22221 23467788999999876555433
Q ss_pred --------CccEEEEccCCCCCCC----------CCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhccCCCC
Q 020266 81 --------GCDGVCHTASPFYHDA----------KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLNTGKP 142 (328)
Q Consensus 81 --------~~d~vih~a~~~~~~~----------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~ 142 (328)
.+|+++|+|+...... ...+...+.+|+.........+.........|.++|.....+.+
T Consensus 78 ~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~p-- 155 (268)
T d2h7ma1 78 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMP-- 155 (268)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCCT--
T ss_pred hhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccCc--
Confidence 4699999998632111 11222345556666666666665542333444444433222110
Q ss_pred CCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHhc---CccEEEEcCCcccCCCC-----CCCCcc---hHH
Q 020266 143 RTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK---SIDLVTINPAMVIGPLL-----QPTLNT---SAA 211 (328)
Q Consensus 143 ~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~-----~~~~~~---~~~ 211 (328)
....|+.+|.+.+.+++.++.++ |+++..|.||.+-.+.. ...... ...
T Consensus 156 --------------------~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 215 (268)
T d2h7ma1 156 --------------------AYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQ 215 (268)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHH
T ss_pred --------------------ccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchH
Confidence 23569999999999999998864 79999999998876421 010100 111
Q ss_pred HHH-HHHhCCCCCCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEec
Q 020266 212 AVL-SLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVE 257 (328)
Q Consensus 212 ~~~-~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~ 257 (328)
.+. ......| ..+.+..++|+|+++.+++... ...|....++
T Consensus 216 ~~~~~~~~~~p----l~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vD 260 (268)
T d2h7ma1 216 LLEEGWDQRAP----IGWNMKDATPVAKTVCALLSDWLPATTGDIIYAD 260 (268)
T ss_dssp HHHHHHHHHCT----TCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEES
T ss_pred HHHHHHHhcCC----CCCCCCCHHHHHHHHHHHhCchhcCccCCEEEEC
Confidence 111 1222111 1234778999999999999643 2367544443
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.70 E-value=1.1e-15 Score=128.83 Aligned_cols=218 Identities=17% Similarity=0.167 Sum_probs=138.4
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh-hhhhhhhhccCCCCcEEEEEccCCCcCchH----Hhh------
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP-KKTRHLLALDGASERLQLFKANLLEEGSFD----SIV------ 79 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~----~~~------ 79 (328)
++|||||++.||+++++.|+++|++|++.+|+.++. +.+...+... .......++.|..+....+ +++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA-RAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA 81 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhh-cCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999986653 3333333222 2346677777776554322 222
Q ss_pred -CCccEEEEccCCCCCCCC----------------CcchhhhhHHHHHHHHHHHHHhcCC--------CccEEEEecchh
Q 020266 80 -DGCDGVCHTASPFYHDAK----------------DPQVELLDPAVKGTLNVLNSCAKFP--------SIKRVVLTSSMA 134 (328)
Q Consensus 80 -~~~d~vih~a~~~~~~~~----------------~~~~~~~~~N~~~~~~l~~~~~~~~--------~~~~~v~~SS~~ 134 (328)
.++|++|||||....... ..+...+..|+.+............ ....++.+|+.+
T Consensus 82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (266)
T d1mxha_ 82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM 161 (266)
T ss_dssp HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence 368999999996332110 0111334445555555544443321 223566777754
Q ss_pred hhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHH
Q 020266 135 AVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAA 211 (328)
Q Consensus 135 ~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~ 211 (328)
.....+ ....|+.||.+.+.+++.++.+ +|++++.|.||.+..+...+ ..
T Consensus 162 ~~~~~~----------------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~-----~~ 214 (266)
T d1mxha_ 162 TDLPLP----------------------GFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP-----QE 214 (266)
T ss_dssp GGSCCT----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC-----HH
T ss_pred ccccCc----------------------chhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC-----HH
Confidence 332110 2356999999999999999886 48999999999987764322 23
Q ss_pred HHHHHHhCCCCCCCCCccceeHHHHHHHHHHhhcCCC--CCCcEEEecCcc
Q 020266 212 AVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVPS--ANGRYCLVERVS 260 (328)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~v~v~D~a~~~~~~~~~~~--~~g~~~~~~~~~ 260 (328)
....+.+.-|. .+.+..++|+|.++++++.... ..|.....++.+
T Consensus 215 ~~~~~~~~~pl----~r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~ 261 (266)
T d1mxha_ 215 TQEEYRRKVPL----GQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 261 (266)
T ss_dssp HHHHHHTTCTT----TSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHhcCCC----CCCCCCHHHHHHHHHHHhCchhCCccCCeEEECccH
Confidence 33334333221 1235689999999999997542 467544444433
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.68 E-value=3.9e-16 Score=135.64 Aligned_cols=170 Identities=10% Similarity=0.068 Sum_probs=117.2
Q ss_pred CCeEEEEC--CccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhcc---------C-CCCcEEEEEc---------
Q 020266 9 GKVVCVTG--ASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD---------G-ASERLQLFKA--------- 67 (328)
Q Consensus 9 ~~~vlVtG--atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---------~-~~~~~~~~~~--------- 67 (328)
+|.+|||| ++..||+++++.|+++|.+|++..+............... . .........+
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence 68899999 5679999999999999999999887654322211110000 0 0011222322
Q ss_pred -----------cCCCcCchHHhhC-------CccEEEEccCCCCC-------CCCCcchhhhhHHHHHHHHHHHHHhcCC
Q 020266 68 -----------NLLEEGSFDSIVD-------GCDGVCHTASPFYH-------DAKDPQVELLDPAVKGTLNVLNSCAKFP 122 (328)
Q Consensus 68 -----------Dl~~~~~~~~~~~-------~~d~vih~a~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~ 122 (328)
|+++.+.++++++ ++|++||+||.... ...+.+...+++|+.++.++++++.+.+
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m 161 (329)
T d1uh5a_ 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhc
Confidence 5556666665544 68999999986321 2234566789999999999999988762
Q ss_pred -CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh----cCccEEEEcCCcc
Q 020266 123 -SIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE----KSIDLVTINPAMV 197 (328)
Q Consensus 123 -~~~~~v~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~~v 197 (328)
..+++|.+||.+...+.+ . ....|+.+|.+.+.+++.++.+ +|+++.+|.||.|
T Consensus 162 ~~~GsIv~iss~~~~~~~p-----------------~----y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i 220 (329)
T d1uh5a_ 162 KPQSSIISLTYHASQKVVP-----------------G----YGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPL 220 (329)
T ss_dssp EEEEEEEEEECGGGTSCCT-----------------T----CTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_pred ccccccccceeehhccccc-----------------c----cchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcc
Confidence 335899999866543211 0 1234999999999999998864 4899999999988
Q ss_pred cC
Q 020266 198 IG 199 (328)
Q Consensus 198 ~G 199 (328)
-.
T Consensus 221 ~T 222 (329)
T d1uh5a_ 221 KS 222 (329)
T ss_dssp CC
T ss_pred cc
Confidence 55
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.60 E-value=9.7e-15 Score=122.31 Aligned_cols=220 Identities=17% Similarity=0.093 Sum_probs=126.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh--------hC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI--------VD 80 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~--------~~ 80 (328)
||+|+||||++.||+++++.|+++|++|++++|+..+. ..|+.+.+..... ..
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~-------------------~~d~~~~~~~~~~~~~~~~~~~~ 61 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV-------------------IADLSTAEGRKQAIADVLAKCSK 61 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE-------------------ECCTTSHHHHHHHHHHHHTTCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHH-------------------HHHhcCHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999875432 2355544332221 12
Q ss_pred CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcC---CCccEEEEecchhhhccCCCCCCCCcc---------
Q 020266 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKF---PSIKRVVLTSSMAAVLNTGKPRTPDVV--------- 148 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~--------- 148 (328)
.+|+++|+|+.... .+.+.....+|..+...+.+..... ........+++....+..... .....
T Consensus 62 ~id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~ 138 (257)
T d1fjha_ 62 GMDGLVLCAGLGPQ--TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDK-NPLALALEAGEEAK 138 (257)
T ss_dssp CCSEEEECCCCCTT--CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGG-CTTHHHHHHTCHHH
T ss_pred CCcEEEEcCCCCCc--HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhh-hhhhhhccCCcEEE
Confidence 58999999986433 2334466777888777776654321 133455666654322210000 00000
Q ss_pred ---ccCCCCCCccccccCCchhhhhhHHHHHHHHHHHHh---cCccEEEEcCCcccCCCCCCCCcchHHHHHHHHhCCCC
Q 020266 149 ---VDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE---KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT 222 (328)
Q Consensus 149 ---~~E~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
........+ ....|+.+|.+.+.+.+.++.+ +|+++++|.||.+-.|....... -........+..
T Consensus 139 i~s~~~~~~~~~-----~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~~~-- 210 (257)
T d1fjha_ 139 ARAIVEHAGEQG-----GNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ-DPRYGESIAKFV-- 210 (257)
T ss_dssp HHHHHHTCCTTH-----HHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC----------------------CC--
T ss_pred EeeehhccCCCc-----chHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcC-CHHHHHHHHhcC--
Confidence 000000000 1235999999999999999876 48999999999998774322110 001111111111
Q ss_pred CCCCCccceeHHHHHHHHHHhhcCC--CCCCcEEEecCcc
Q 020266 223 YPNVTFGWVNVKDVANAHIQAFEVP--SANGRYCLVERVS 260 (328)
Q Consensus 223 ~~~~~~~~v~v~D~a~~~~~~~~~~--~~~g~~~~~~~~~ 260 (328)
.....+..++|+|.++.+++... ...|....+++.+
T Consensus 211 --~PlgR~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG~ 248 (257)
T d1fjha_ 211 --PPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGI 248 (257)
T ss_dssp --CSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred --CCCCCCcCHHHHHHHHHHHhCchhCCccCceEEeCCCc
Confidence 11234678999999999998643 3467555555443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.43 E-value=1.9e-14 Score=114.88 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=71.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
++++|+|+||||+|.||+.+++.|+++|++|++++|+.++...+...+... .++....+|+++.+++++.+.++|+|
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~iDil 96 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVKGAHFV 96 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc---cchhhhhhhcccHHHHHHHhcCcCee
Confidence 467999999999999999999999999999999999987766655544322 24567889999999999999999999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
||+||.
T Consensus 97 in~Ag~ 102 (191)
T d1luaa1 97 FTAGAI 102 (191)
T ss_dssp EECCCT
T ss_pred eecCcc
Confidence 999986
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.61 E-value=1.8e-07 Score=69.79 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=73.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhc-cCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
++|||.|+|+ |++|..++..|+.+| .+|..++++++..+.....+.. ...........+|. + .+.++|+
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~----~~~~adi 75 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---S----DCKDADL 75 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---G----GGTTCSE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH---H----HhccccE
Confidence 4678999995 999999999999987 6899999887554433222211 11122334444543 2 3568999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
||.+||......... .+.+..|+.-.+.+.+...+. ..+-++.+-|
T Consensus 76 vvitag~~~~~g~~r-~~l~~~N~~i~~~~~~~i~~~-~p~aivivvt 121 (146)
T d1ez4a1 76 VVITAGAPQKPGESR-LDLVNKNLNILSSIVKPVVDS-GFDGIFLVAA 121 (146)
T ss_dssp EEECCCC-----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred EEEecccccCCCCCH-HHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeC
Confidence 999998744433333 377889999999999999988 4443444433
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.60 E-value=1.5e-07 Score=69.97 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=76.9
Q ss_pred eEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
||.|+||+|.+|++++-.|..+| -++..++.++.+...+ .+............ ....+..+.++++|+||.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~--Dl~~~~~~~~~~~~----~~~~~~~~~~~~aDivVit 75 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA--DLSHIETRATVKGY----LGPEQLPDCLKGCDVVVIP 75 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH--HHTTSSSSCEEEEE----ESGGGHHHHHTTCSEEEEC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH--HHhhhhhhcCCCeE----EcCCChHHHhCCCCEEEEC
Confidence 79999999999999999888887 4688888764332221 11111100111111 1235566778899999999
Q ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 89 ASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 89 a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
||......... .+.++.|+...+.+++.+.+++....++.+|.
T Consensus 76 ag~~~~~g~sR-~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN 118 (144)
T d1mlda1 76 AGVPRKPGMTR-DDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (144)
T ss_dssp CSCCCCTTCCG-GGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCcCCCCCCCc-chHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 99754443333 48899999999999999999833345555554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.56 E-value=4.7e-08 Score=72.05 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=59.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 88 (328)
|+|+|.|+ |.+|+.+++.|.+.|++|++++++++....+... .+...+.||.+|++.+.++ ++.+|.++-+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-------~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-------IDALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------CSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-------hhhhhccCcccchhhhhhcChhhhhhhccc
Confidence 68999997 9999999999999999999999988766554332 1467899999999988877 4678988865
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
.
T Consensus 73 t 73 (132)
T d1lssa_ 73 T 73 (132)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=2.5e-06 Score=63.29 Aligned_cols=116 Identities=19% Similarity=0.109 Sum_probs=75.8
Q ss_pred CeEEEECCccHHHHHHHHHHHH-CC--CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLS-RG--YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~-~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|||.|+|++|.+|++++-.|.. .+ .++..++..+ ..+.....+...........+ ....+++ .++++|+||
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~----~~~~~~~-~~~~aDvvv 74 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGF----SGEDATP-ALEGADVVL 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEE----CSSCCHH-HHTTCSEEE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEE----EcCCCcc-ccCCCCEEE
Confidence 5799999999999999987754 34 7888888754 333222222221111122222 2223333 577899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
-+||......... .+.++.|..-.+.+.+.+.+......+|.+|.
T Consensus 75 itaG~~~k~g~~R-~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 75 ISAGVRRKPGMDR-SDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp ECCSCCCCTTCCG-GGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred ECCCccCCCCcch-hhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 9999754443333 48889999999999999988744445666665
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.47 E-value=1.2e-06 Score=65.09 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=74.2
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCCh--hhhhhhhhc--cCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDP--KKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~--~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
|||.|+||+|.+|+.++-.|+.+| .++..+++++... +.....+.. .......+....--.++ +.++++|
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~aD 76 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL----RIIDESD 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTTCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH----HHhccce
Confidence 579999999999999999999888 5888888875322 222111111 11112233221111122 3567899
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEe
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~ 130 (328)
+||-+||........ ..+.++.|..-.+.+.+...+. ..+.++.+
T Consensus 77 vVVitAG~~~~~g~s-R~dl~~~Na~iv~~i~~~i~~~-~~~~iivV 121 (145)
T d1hyea1 77 VVIITSGVPRKEGMS-RMDLAKTNAKIVGKYAKKIAEI-CDTKIFVI 121 (145)
T ss_dssp EEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHH-CCCEEEEC
T ss_pred EEEEecccccCCCCC-hhhhhhhhHHHHHHHHHHHhcc-CCCeEEEE
Confidence 999999975443333 3478899999999999999887 34445444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.41 E-value=1.9e-06 Score=64.35 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=78.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhc--cCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
.++||.|+|| |++|+.++-.|+..| .++..++++++..+.....+.. ...........+|. +.++++|
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~daD 76 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDCRDAD 76 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGTTTCS
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHhccce
Confidence 3678999997 999999999999887 4799999876654432222211 11122344444442 3466899
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+||.+|+......... .+.+..|+.-.+.+.+...++.....+|.+|-
T Consensus 77 vvvitag~~~~~~~~R-~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN 124 (148)
T d1ldna1 77 LVVICAGANQKPGETR-LDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124 (148)
T ss_dssp EEEECCSCCCCTTTCS-GGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred eEEEecccccccCcch-hHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence 9999998754443333 37788999999999998888733345555544
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.30 E-value=4.4e-06 Score=61.56 Aligned_cols=114 Identities=15% Similarity=0.003 Sum_probs=74.7
Q ss_pred eEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCC--Chhhhhhhhh-ccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 11 VVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPN--DPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~--~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
||.|+||+|.+|+.++-.|..+| .++..++.... ........+. ........+...+|. + .+.++|+|
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~----~~~~aDiV 74 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---E----DTAGSDVV 74 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG---G----GGTTCSEE
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH---H----HhhhcCEE
Confidence 79999999999999999999987 37888776432 2221111111 111123344444442 2 24689999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|-+||........ ..+.++.|..-.+.+.+...+......++.+|-
T Consensus 75 vitaG~~~~~g~~-R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN 120 (142)
T d1o6za1 75 VITAGIPRQPGQT-RIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (142)
T ss_dssp EECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred EEecccccccCCc-hhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence 9999875443333 348889999999999999998843344555544
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.28 E-value=6e-07 Score=69.45 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=58.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
.|+|+|.|| |++|++++++|.++||+|++.+|+.++...+...+ ........+..+.....+.+...|.++.+
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 74 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV------QHSTPISLDVNDDAALDAEVAKHDLVISL 74 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC------TTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc------cccccccccccchhhhHhhhhccceeEee
Confidence 589999997 99999999999999999999999988777654432 34455556666666777777888888865
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
.
T Consensus 75 ~ 75 (182)
T d1e5qa1 75 I 75 (182)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.24 E-value=6.4e-07 Score=65.90 Aligned_cols=71 Identities=23% Similarity=0.145 Sum_probs=57.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 88 (328)
|+++|.|+ |-+|+++++.|.+.|++|++++.+++....+.. .....+.||.++++.+.++ ++++|.||=+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~--------~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--------YATHAVIANATEENELLSLGIRNFEYVIVA 71 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT--------TCSEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH--------hCCcceeeecccchhhhccCCccccEEEEE
Confidence 57899986 999999999999999999999998776554322 2456788999999988876 6788987754
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
.
T Consensus 72 ~ 72 (134)
T d2hmva1 72 I 72 (134)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=4.4e-06 Score=62.78 Aligned_cols=119 Identities=18% Similarity=0.052 Sum_probs=72.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC----e-EEE-EecCCCChhhhhh---hhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY----T-VKA-SVRDPNDPKKTRH---LLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~----~-V~~-~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
+.+||.|+||+|++|++++-.|...+. + +.. +.......+.+.. .... ........+... ....+.
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~ 77 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELED-CAFPLLAGLEAT----DDPKVA 77 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHT-TTCTTEEEEEEE----SCHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhc-cccccccccccC----Cchhhh
Confidence 366899999999999999998887652 1 211 1112222222111 1111 111223333222 334567
Q ss_pred hCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecc
Q 020266 79 VDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSS 132 (328)
Q Consensus 79 ~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS 132 (328)
++++|+||-+||......... .+.+..|+.-.+.+.+.+.+... ...++.+|-
T Consensus 78 ~~~advViitaG~~~~pg~~r-~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 78 FKDADYALLVGAAPRKAGMER-RDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp TTTCSEEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred cccccEEEeecCcCCCCCCcH-HHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 889999999999865544443 47888999999999999888522 234555554
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.22 E-value=2.2e-06 Score=64.42 Aligned_cols=119 Identities=18% Similarity=0.095 Sum_probs=75.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+.+||.|+|+ |.+|+.++-.|...+ .++..++.++...+.....+... ......... ...+.++.++++|+
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~adi 79 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR-----AEYSYEAALTGADC 79 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE-----EECSHHHHHTTCSE
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEe-----ccCchhhhhcCCCe
Confidence 4678999997 999999998887777 48888888776554433222111 000011111 11335667789999
Q ss_pred EEEccCCCCCCCC----CcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 85 VCHTASPFYHDAK----DPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 85 vih~a~~~~~~~~----~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|+-+|+....... ....+.+..|..-.+.+++.+.+.+...-++.+|.
T Consensus 80 Vvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN 131 (154)
T d1pzga1 80 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN 131 (154)
T ss_dssp EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9999986432211 12236788899999999999988733334444443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.20 E-value=8.7e-06 Score=60.07 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=71.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhc-cCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+||.|+|+ |.+|+.++-.|+.+| .++..++++++..+.....+.. ...........+| + +.++++|+||
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~----~~~~~adivv 73 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---Y----SDVKDCDVIV 73 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---G----GGGTTCSEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---H----HHhCCCceEE
Confidence 47999997 999999999999987 4899999887765443322221 1222333333332 2 2457899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
-+||......... .+.++.|+.-.+.+.+.+.++.....+|.+|-
T Consensus 74 itag~~~~~~~~r-~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN 118 (142)
T d1y6ja1 74 VTAGANRKPGETR-LDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN 118 (142)
T ss_dssp ECCCC------CH-HHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred EecccccCcCcch-hHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence 9998754433333 47888999999999999988733334555543
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.18 E-value=5.3e-06 Score=62.32 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=76.6
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhc-c-CCCCcEEEEEccCCCcCchHHhhC
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL-D-GASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
..++..||.|+|+ |.+|..++-.|...| .++..++++++..+....-+.. . ...........| + +.+.
T Consensus 15 ~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d---~----~~~~ 86 (159)
T d2ldxa1 15 DKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD---Y----NVSA 86 (159)
T ss_dssp CCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS---G----GGGT
T ss_pred ccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc---h----hhhc
Confidence 3455668999996 999999999999887 4788898876655433222211 1 111122222223 2 2346
Q ss_pred CccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 81 GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
++|+||-+||......... .+.++.|+.-.+.+.....+......++.+|-
T Consensus 87 ~adivvitag~~~~~~~~R-~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 87 NSKLVIITAGARMVSGQTR-LDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp TEEEEEECCSCCCCTTTCS-SCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred cccEEEEecccccCCCCCH-HHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 7999999998754433333 37788999999998888777633345565555
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.15 E-value=2e-05 Score=58.18 Aligned_cols=114 Identities=13% Similarity=-0.028 Sum_probs=74.2
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
|||.|+|| |.+|+.++..|+..| .++..+++++...+......... ......+.... .++ +.+.++|+|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~----~~~~dadvv 73 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY----ADTANSDIV 73 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG----GGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCH----HHhcCCeEE
Confidence 57999996 999999999999987 68999998877654432211110 01112222211 112 246789999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEec
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~S 131 (328)
|-+||......... .+.++.|..-.+.+.+.+.+.+....++.+|
T Consensus 74 vitag~~~~~g~~r-~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 74 IITAGLPRKPGMTR-EDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp EECCSCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred EEEEecCCCCCCch-HHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 99998754433333 4778889999999999888873333444443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=98.13 E-value=2.7e-05 Score=59.46 Aligned_cols=118 Identities=14% Similarity=0.001 Sum_probs=72.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-----CeE--EEEecCCCC--hhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-----YTV--KASVRDPND--PKKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-----~~V--~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
..+|.||||+|.||.+++-.|+..+ ..| ..++..... ...+...+.... .+....+.. ..+..+.+
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a-~~~~~~~~~----~~~~~~~~ 98 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL-YPLLREVSI----GIDPYEVF 98 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT-CTTEEEEEE----ESCHHHHT
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccc-cccccCccc----cccchhhc
Confidence 5579999999999999999888742 223 333333221 122222111111 122222111 12456678
Q ss_pred CCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecc
Q 020266 80 DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSS 132 (328)
Q Consensus 80 ~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS 132 (328)
+++|+||-+||......... .+.++.|..-.+.+.+++.++.. .-+++.+|-
T Consensus 99 ~~aDvVvi~ag~~rkpg~tR-~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 99 EDVDWALLIGAKPRGPGMER-AALLDINGQIFADQGKALNAVASKNVKVLVVGN 151 (175)
T ss_dssp TTCSEEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred cCCceEEEeeccCCCCCCcH-HHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 89999999998865444443 48899999999999999988622 335666653
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.13 E-value=2.1e-05 Score=58.96 Aligned_cols=116 Identities=12% Similarity=0.054 Sum_probs=77.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhhhhhhhh--ccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKKTRHLLA--LDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
+.+||.|+|+ |.+|+.++-.|..+|. ++..++++++..+....-+. ....+.......+|. +.++++|
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-------~~~~~ad 90 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-------SVTANSK 90 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-------GGGTTCS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-------hhccccc
Confidence 4678999996 9999999999999984 78888887655543322221 111112222222332 2356799
Q ss_pred EEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 84 GVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 84 ~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+||..||.......+. .+.++.|+.-.+.+.....+.....-+|.+|-
T Consensus 91 iVVitAg~~~~~g~tR-~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN 138 (160)
T d1i0za1 91 IVVVTAGVRQQEGESR-LNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN 138 (160)
T ss_dssp EEEECCSCCCCTTCCG-GGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEEecCCccccCcch-HHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9999999755443343 37888999999999999888733345666655
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.11 E-value=1.2e-05 Score=59.39 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=75.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhc-cCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL-DGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.||.|+|+ |.+|++++-.|+.+| .++..+++++...+....-+.. ............+ +++ .++++|+||
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~-----~~~-~~~daDvVV 74 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD-----DPE-ICRDADMVV 74 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES-----CGG-GGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC-----CHH-HhhCCcEEE
Confidence 47999996 999999999999988 4889899877554432221111 1111222332221 222 356799999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
-+||......... .+.++.|..-.+.+...+.+......+|.+|-
T Consensus 75 itaG~~~~~g~~R-~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN 119 (143)
T d1llda1 75 ITAGPRQKPGQSR-LELVGATVNILKAIMPNLVKVAPNAIYMLITN 119 (143)
T ss_dssp ECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred EecccccCCCCch-hhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 9999765444444 37888999999999998888733334444443
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.05 E-value=1.6e-05 Score=58.54 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=73.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhh-ccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLA-LDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|||.|+|+ |.+|+.++-.|+.++ .++..++++++..+.....+. ............+| + +.++++|+||
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~----~~~~~adivv 72 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---Y----ADLKGSDVVI 72 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---G----GGGTTCSEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---H----HHhcCCCEEE
Confidence 57999996 999999999888876 588888887655443222111 11112233443333 2 2367899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEec
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~S 131 (328)
-+|+......... .+.+..|..-.+.+.+...+.+....++.+|
T Consensus 73 itag~~~~~g~~r-~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 73 VAAGVPQKPGETR-LQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp ECCCCCCCSSCCH-HHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EecccccCCCcch-hhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 9998755443333 3778889999999999988873333444444
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.04 E-value=1.5e-06 Score=68.21 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=39.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhh
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA 54 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~ 54 (328)
|||.|+||+|.+|++|++.|++.||+|.+.+|++++...+.....
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~ 45 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR 45 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 579999999999999999999999999999999877766655443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.99 E-value=3.7e-05 Score=56.57 Aligned_cols=115 Identities=11% Similarity=0.069 Sum_probs=73.6
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhh--ccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLA--LDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
|||.|+|+ |.+|..++-.|+.+| .++..++++++..+....-+. ............. .++ +.++++|+|
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~-----~d~-~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG-----ADY-SLLKGSEII 73 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE-----SCG-GGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccC-----CCH-HHhccccEE
Confidence 57999996 999999999988877 578888887655443221111 1011111222211 122 256789999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|-.|+......... .+.+..|..-...+.+.+.+......++.+|-
T Consensus 74 vitag~~~~~g~~r-~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1ojua1 74 VVTAGLARKPGMTR-LDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (142)
T ss_dssp EECCCCCCCSSCCH-HHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEeccccCCCCCch-HHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence 99998654443333 47888899999999999988733334444444
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.96 E-value=2.7e-05 Score=57.54 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=72.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCCChhhhhhhhhc--cCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPNDPKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
|||.|+|+ |.+|..++-.|+.+| .++..+++++.+.+.....+.. ...........+| ++ .++++|+|
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~~----~l~~adiV 73 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---WA----ALADADVV 73 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---GG----GGTTCSEE
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---HH----HhccccEE
Confidence 68999995 999999999999877 4788888876654443322211 1112233333343 22 35789999
Q ss_pred EEccCCCCCCC---CCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEec
Q 020266 86 CHTASPFYHDA---KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (328)
Q Consensus 86 ih~a~~~~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~S 131 (328)
|-+||...... .....+.++.|+.-.+.+.+...+......+|.+|
T Consensus 74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 99998643111 11123667889999999999998873333344444
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.92 E-value=1.5e-05 Score=61.46 Aligned_cols=80 Identities=19% Similarity=0.060 Sum_probs=53.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
.|+|.|+|| |-+|..++..|.++||+|.+++|+++..+.+..........+..+..........+..+.++++|+||-+
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 378999997 9999999999999999999999987655544332111111111222222222224577888999999976
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
.
T Consensus 80 v 80 (184)
T d1bg6a2 80 V 80 (184)
T ss_dssp S
T ss_pred E
Confidence 4
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.87 E-value=5.7e-05 Score=56.45 Aligned_cols=117 Identities=19% Similarity=0.022 Sum_probs=69.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-----Ce--EEEEecCCCCh--hhhhhhhhccCCCCcEEEEEccCCCcCchHHhh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-----YT--VKASVRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-----~~--V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
.+||.|+||+|.+|++++-.|+..+ .. +..++.++... +.+........ .+....+.. ..+..+.+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~-~~~~~~~~~----~~~~~~~~ 77 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA-LPLLKDVIA----TDKEEIAF 77 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC-CTTEEEEEE----ESCHHHHT
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccc-ccccccccc----Cccccccc
Confidence 5689999999999999999887643 12 33333322211 12211111111 122222221 12345677
Q ss_pred CCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEec
Q 020266 80 DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTS 131 (328)
Q Consensus 80 ~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~S 131 (328)
+++|+||-+||......... .+.++.|..-.+.+.+...+..+ ...+|.+|
T Consensus 78 ~~~dvVVitag~~~~~g~sr-~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 78 KDLDVAILVGSMPRRDGMER-KDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp TTCSEEEECCSCCCCTTCCT-TTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred CCceEEEEecccCCCCCCch-hHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 88999999998755443333 37788999999999998877523 33445555
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.87 E-value=1.5e-05 Score=58.84 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=68.6
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhc----cCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLAL----DGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+||.|+|+ |.+|..++-.|+..+ .++..++.+++........+.. .....++.. . .++. .+.++|+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~-~------~d~~-~~~~adv 72 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG-T------NNYA-DTANSDV 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-E------SCGG-GGTTCSE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEe-c------CcHH-HhcCCCE
Confidence 58999996 999999999888877 4888888877654443222211 111112221 1 2222 3467999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEec
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~S 131 (328)
||-+||......... .+.++.|..-.+.+++...+......++.+|
T Consensus 73 vvitag~~~~~~~~r-~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 73 IVVTSGAPRKPGMSR-EDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp EEECCSCC----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred EEEeeeccCCcCcch-hHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 999999754333333 3778899999999999998873333444443
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=1.4e-05 Score=61.70 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=62.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.++|+|+|.|+ |..|++++..|.+.|. ++.+..|+.+..+.+..+...............|+.+.+.+.+.+..+|+|
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 94 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL 94 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence 46799999996 8999999999999985 688889988877654443322111123445567888888888888889999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
||+...
T Consensus 95 IN~Tp~ 100 (182)
T d1vi2a1 95 TNGTKV 100 (182)
T ss_dssp EECSST
T ss_pred ccccCC
Confidence 999754
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.81 E-value=1.3e-05 Score=60.36 Aligned_cols=73 Identities=21% Similarity=0.192 Sum_probs=57.4
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
.+++++|+|+|+ |-+|+.+++.|...|. ++.+..|+.++...+...++ ... .+.+++.+.+..+|+
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~-------~~~-----~~~~~~~~~l~~~Di 87 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG-------GEA-----VRFDELVDHLARSDV 87 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT-------CEE-----CCGGGHHHHHHTCSE
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh-------ccc-----ccchhHHHHhccCCE
Confidence 457899999997 9999999999999997 68889998777766555431 222 334677888889999
Q ss_pred EEEccCC
Q 020266 85 VCHTASP 91 (328)
Q Consensus 85 vih~a~~ 91 (328)
||.+.+.
T Consensus 88 vi~atss 94 (159)
T d1gpja2 88 VVSATAA 94 (159)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 9999874
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=2e-05 Score=58.25 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=29.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC----CeEEEEecCCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG----YTVKASVRDPND 45 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~ 45 (328)
||+|.|.||||++|+.+++.|+++. .+++.+.++...
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~ 41 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG 41 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc
Confidence 6799999999999999999888763 356666665544
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.74 E-value=1.6e-05 Score=59.40 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=35.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (328)
..+++|.|+||+|.+|+.+++.|.+.||+|.+.+|+...
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~ 45 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA 45 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc
Confidence 347899999999999999999999999999999997654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=6.2e-05 Score=52.70 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=54.9
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 85 (328)
...||.|.| .|.+|+-++....+.|++|++++.++..+... -.-.++.+|..|.+.+.++.. ++|+|
T Consensus 10 ~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~----------va~~~i~~~~~d~~~l~~~~~~~~~Dvi 78 (111)
T d1kjqa2 10 AATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPAMH----------VAHRSHVINMLDGDALRRVVELEKPHYI 78 (111)
T ss_dssp TCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGGGG----------GSSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCchhh----------cCCeEEECCCCCHHHHHHHHHhhCCceE
Confidence 356899999 59999999999999999999999987765430 123578899999998888775 57998
Q ss_pred E
Q 020266 86 C 86 (328)
Q Consensus 86 i 86 (328)
.
T Consensus 79 T 79 (111)
T d1kjqa2 79 V 79 (111)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.72 E-value=2.2e-05 Score=60.60 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=52.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-----CCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DGC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 82 (328)
++.+|||+||+|.+|...++.....|.+|+++++++++.+.+... +...+ .|-.+.+..+.+. +++
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~--------Ga~~v-i~~~~~~~~~~~~~~~~~~Gv 99 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI--------GFDAA-FNYKTVNSLEEALKKASPDGY 99 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--------TCSEE-EETTSCSCHHHHHHHHCTTCE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh--------hhhhh-cccccccHHHHHHHHhhcCCC
Confidence 478999999999999999998888999999999987654443332 11111 2334444444433 269
Q ss_pred cEEEEccC
Q 020266 83 DGVCHTAS 90 (328)
Q Consensus 83 d~vih~a~ 90 (328)
|+||++.|
T Consensus 100 d~v~D~vG 107 (182)
T d1v3va2 100 DCYFDNVG 107 (182)
T ss_dssp EEEEESSC
T ss_pred ceeEEecC
Confidence 99999876
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=2.2e-05 Score=50.89 Aligned_cols=44 Identities=32% Similarity=0.324 Sum_probs=38.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRH 51 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~ 51 (328)
++++|+|+||+|.+|...+..+...|++|+++.+++++.+.+..
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence 46789999999999999999888889999999999887765443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.69 E-value=0.00012 Score=54.21 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=72.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhcc--CCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALD--GASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+||.|+|+ |.+|+.++-.|..++ .++..++++++..+.....+... ....+......+ + .+.++++|+||
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~----~~~~~~advvv 76 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--T----YDDLAGADVVI 76 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--C----GGGGTTCSEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--c----ccccCCCcEEE
Confidence 57999996 999999998777776 57888888776655433222111 001122222111 1 23456799999
Q ss_pred EccCCCCCCC----CCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 87 HTASPFYHDA----KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 87 h~a~~~~~~~----~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
-+|+...... .....+.+..|..-.+.+.+.+++.+....++.+|-
T Consensus 77 itag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtN 126 (150)
T d1t2da1 77 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 126 (150)
T ss_dssp ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 9998633211 112347788999999999999988733334454444
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.68 E-value=9.5e-06 Score=63.08 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=54.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.|+|+||.|.|| |-.|.+++..|.+.||+|.+.+|+++..+.+..........+++.+ .-++.-..++.++++++|+|
T Consensus 4 ~~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l-~~~i~~t~~l~~a~~~ad~i 81 (189)
T d1n1ea2 4 LLYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQL-ASNITFTSDVEKAYNGAEII 81 (189)
T ss_dssp CCCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBC-CTTEEEESCHHHHHTTCSCE
T ss_pred cceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccc-ccccccchhhhhccCCCCEE
Confidence 355778999995 9999999999999999999999987655544332111100112111 11222234678889999999
Q ss_pred EEcc
Q 020266 86 CHTA 89 (328)
Q Consensus 86 ih~a 89 (328)
|-+.
T Consensus 82 iiav 85 (189)
T d1n1ea2 82 LFVI 85 (189)
T ss_dssp EECS
T ss_pred EEcC
Confidence 8754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.61 E-value=2.9e-05 Score=58.86 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=32.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (328)
|||.|+|. |.+|+.+++.|.+.||+|.+.+|+++..+
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~ 37 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCE 37 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHH
Confidence 57999985 99999999999999999999999865443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.60 E-value=3.9e-05 Score=58.48 Aligned_cols=74 Identities=23% Similarity=0.199 Sum_probs=50.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
++.+|+|+||+|-+|...+..+...|.+|+++++++++.+....+ + ...+ .|..+........+++|+||.
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l----G----a~~~-i~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----G----AEEA-ATYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----T----CSEE-EEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc----c----ccee-eehhhhhhhhhcccccccccc
Confidence 578999999999999999998888999999999887655443322 1 1111 122221111222347999999
Q ss_pred ccC
Q 020266 88 TAS 90 (328)
Q Consensus 88 ~a~ 90 (328)
+.|
T Consensus 98 ~~G 100 (171)
T d1iz0a2 98 VRG 100 (171)
T ss_dssp CSC
T ss_pred ccc
Confidence 876
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=4.1e-05 Score=58.51 Aligned_cols=96 Identities=22% Similarity=0.168 Sum_probs=62.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~ 82 (328)
++.+|||+||+|.+|...+..+...|.+|+++++++++.+...+ + + ... ..|.++.+..+++.+ ++
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~-~---G----a~~-vi~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ-N---G----AHE-VFNHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-T---T----CSE-EEETTSTTHHHHHHHHHCTTCE
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccc-c---C----ccc-ccccccccHHHHhhhhhccCCc
Confidence 47899999999999999999888899999999987654333222 1 1 111 135555554443322 58
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|+|+.+.+. .. ....++.+++. +++|.++.
T Consensus 99 d~v~d~~g~----------~~-------~~~~~~~l~~~---G~iv~~G~ 128 (174)
T d1yb5a2 99 DIIIEMLAN----------VN-------LSKDLSLLSHG---GRVIVVGS 128 (174)
T ss_dssp EEEEESCHH----------HH-------HHHHHHHEEEE---EEEEECCC
T ss_pred eEEeecccH----------HH-------HHHHHhccCCC---CEEEEEec
Confidence 999988652 11 22334555443 68888865
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.57 E-value=0.00011 Score=55.95 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=45.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
|+||.|.||||++|+.|++.|.++. .++..+..+....+.+........ . .-++ ...+...+.+++|+||-
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~-----~--~~~~-~~~~~~~~~~~~dvvf~ 72 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-----E--NSIL-SEFDPEKVSKNCDVLFT 72 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGC-----C--CCBC-BCCCHHHHHHHCSEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhh-----c--cccc-cccCHhHhccccceEEE
Confidence 6789999999999999999999875 566666544333333333221111 0 0111 22334455567999986
Q ss_pred ccC
Q 020266 88 TAS 90 (328)
Q Consensus 88 ~a~ 90 (328)
+..
T Consensus 73 a~p 75 (176)
T d1vkna1 73 ALP 75 (176)
T ss_dssp CCS
T ss_pred ccc
Confidence 653
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=8.5e-05 Score=56.07 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=34.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
|||+|+|+ |.+|..++..|++.||+|.+++|++.....
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~~ 38 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCS 38 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhhh
Confidence 68999998 999999999999999999999998876543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.52 E-value=0.00021 Score=55.92 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=50.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcE-E-----EEEccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERL-Q-----LFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~-----~~~~Dl~~~~~~~~~~~~~d 83 (328)
|+|.|.| .|++|..++..|++.||+|++++.+++..+.+.+-..... .+.. + .....+.-..+..++++++|
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~-e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d 78 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIV-EPGLEALLQQGRQTGRLSGTTDFKKAVLDSD 78 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSC-CTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCccc-chhhhhhhhhhhcccccccCCCHHHHHhhCC
Confidence 5799997 6999999999999999999999987554333221100000 0000 0 00011112245677778899
Q ss_pred EEEEccCCC
Q 020266 84 GVCHTASPF 92 (328)
Q Consensus 84 ~vih~a~~~ 92 (328)
+++-|.+..
T Consensus 79 ~i~i~VpTP 87 (202)
T d1mv8a2 79 VSFICVGTP 87 (202)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCcc
Confidence 999998653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=5.6e-05 Score=57.97 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=54.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh---C--Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---D--GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~--~~ 82 (328)
.+.+|+|+||+|.+|..++......|.+|+++++++++.+.+..+ +... ..|-++++..+++. . ++
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l--------Ga~~-vi~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA--------GAWQ-VINYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH--------TCSE-EEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc--------CCeE-EEECCCCCHHHHHHHHhCCCCe
Confidence 477999999999999999998888899999999998776554433 1111 23656655444332 2 58
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+|+.+.+.
T Consensus 99 d~v~d~~g~ 107 (179)
T d1qora2 99 RVVYDSVGR 107 (179)
T ss_dssp EEEEECSCG
T ss_pred EEEEeCccH
Confidence 999998763
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=97.49 E-value=6.9e-05 Score=56.76 Aligned_cols=44 Identities=34% Similarity=0.438 Sum_probs=37.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL 52 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~ 52 (328)
+.+|||+||+|.+|...+......|.+|+++.+++++.+.+..+
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l 67 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL 67 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh
Confidence 45799999999999999987777899999999998887775554
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.00015 Score=57.45 Aligned_cols=75 Identities=12% Similarity=0.036 Sum_probs=52.8
Q ss_pred ccCCCCeEEEECC----------------ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEcc
Q 020266 5 AAAAGKVVCVTGA----------------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68 (328)
Q Consensus 5 ~~~~~~~vlVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 68 (328)
..+++|+||||+| ||-.|.+|++++..+|++|..+.-...... +..+..+..
T Consensus 2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~-----------p~~~~~~~~- 69 (223)
T d1u7za_ 2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPT-----------PPFVKRVDV- 69 (223)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC-----------CTTEEEEEC-
T ss_pred cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCc-----------cccccccee-
Confidence 3567899999965 799999999999999999999876443211 124444433
Q ss_pred CCCcCc----hHHhhCCccEEEEccCCC
Q 020266 69 LLEEGS----FDSIVDGCDGVCHTASPF 92 (328)
Q Consensus 69 l~~~~~----~~~~~~~~d~vih~a~~~ 92 (328)
...++ +.+.++.+|++|++||..
T Consensus 70 -~t~~~m~~~~~~~~~~~D~~i~aAAvs 96 (223)
T d1u7za_ 70 -MTALEMEAAVNASVQQQNIFIGCAAVA 96 (223)
T ss_dssp -CSHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred -hhhHHHHHHHHhhhccceeEeeeechh
Confidence 22233 334445899999999873
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.44 E-value=7.4e-05 Score=55.06 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=27.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC---CeEEEEecCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG---YTVKASVRDP 43 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~ 43 (328)
.++|.|.||||++|+.|++.|.+++ .++..+..+.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~ 39 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAE 39 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecc
Confidence 4689999999999999999997665 4666665443
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.43 E-value=0.00018 Score=55.24 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=44.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+..||.|.||||++|+.|++.|.++. .++..+..+......+......... ..+..........+.++|+||
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~Dvvf 76 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLIT-------QDLPNLVAVKDADFSNVDAVF 76 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTT-------SCCCCCBCGGGCCGGGCSEEE
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccc-------cccccchhhhhhhhcccceee
Confidence 45689999999999999999999875 5666665433333333332211110 011222222333455789998
Q ss_pred EccC
Q 020266 87 HTAS 90 (328)
Q Consensus 87 h~a~ 90 (328)
-+..
T Consensus 77 ~alp 80 (183)
T d2cvoa1 77 CCLP 80 (183)
T ss_dssp ECCS
T ss_pred eccc
Confidence 6653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.41 E-value=0.00011 Score=55.38 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=50.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
|++|.++| .|.+|+++++.|+++||+|.+.+|++++.+.+.... ........+.++.+|+|+-+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~e~~~~~diii~~ 64 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG---------------ASAARSARDAVQGADVVISM 64 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT---------------CEECSSHHHHHTSCSEEEEC
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhh---------------ccccchhhhhccccCeeeec
Confidence 57899998 799999999999999999999999877655543321 11124566778889998876
Q ss_pred cC
Q 020266 89 AS 90 (328)
Q Consensus 89 a~ 90 (328)
-.
T Consensus 65 v~ 66 (162)
T d3cuma2 65 LP 66 (162)
T ss_dssp CS
T ss_pred cc
Confidence 53
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.41 E-value=0.00026 Score=54.19 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=27.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEe
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASV 40 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 40 (328)
|+||.|.|||||+|+.|++.|.++. +++..+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 6799999999999999999999984 6665543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.40 E-value=0.00019 Score=54.63 Aligned_cols=43 Identities=40% Similarity=0.480 Sum_probs=37.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRH 51 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~ 51 (328)
+.+|||+||+|.+|...+......|.+|+++.+++++.+....
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~ 74 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV 74 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh
Confidence 6789999999999999998888899999999999888766544
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.40 E-value=7.1e-05 Score=57.59 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=63.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-----CCc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DGC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 82 (328)
++.+|||+||+|.+|...+..+...|.+|+++.+++++.+.+.+. +...+ .|-.+++..+++. +++
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~--------Ga~~v-i~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL--------GVEYV-GDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT--------CCSEE-EETTCSTHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc--------ccccc-ccCCccCHHHHHHHHhCCCCE
Confidence 368999999999999999998888899999999876554433221 11111 2444544333332 269
Q ss_pred cEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 83 DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
|+||.+.+. +.+ ...++.++.. +++|.++...
T Consensus 96 d~v~d~~g~----------~~~-------~~~~~~l~~~---G~~v~~G~~~ 127 (183)
T d1pqwa_ 96 DVVLNSLAG----------EAI-------QRGVQILAPG---GRFIELGKKD 127 (183)
T ss_dssp EEEEECCCT----------HHH-------HHHHHTEEEE---EEEEECSCGG
T ss_pred EEEEecccc----------hHH-------HHHHHHhcCC---CEEEEEccCC
Confidence 999998862 111 2234444443 6899987643
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.00015 Score=55.02 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=53.9
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.++|+|+|.|+ |..+++++..|.+.|.+|.++.|+.++.+.+...+.... .++.+..| +. ....+|+||
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~---~~~~~~~~--~~-----~~~~~dliI 84 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG---SIQALSMD--EL-----EGHEFDLII 84 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS---SEEECCSG--GG-----TTCCCSEEE
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc---cccccccc--cc-----cccccceee
Confidence 46899999996 889999999999999999999999888777666543322 33333222 11 124689999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
|+...
T Consensus 85 N~Tp~ 89 (170)
T d1nyta1 85 NATSS 89 (170)
T ss_dssp ECCSC
T ss_pred ccccc
Confidence 99754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.37 E-value=0.00041 Score=52.36 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=51.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC-CcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL-EEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~d~vi 86 (328)
.+.+|+|.|+ |.+|...+..+...|.+|+++++++++.+...++ . .. .++ |-. +.+..+...+++|.++
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l-G-----a~-~~i--~~~~~~~~~~~~~~~~d~vi 96 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMKM-G-----AD-HYI--ATLEEGDWGEKYFDTFDLIV 96 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH-T-----CS-EEE--EGGGTSCHHHHSCSCEEEEE
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhhcc-C-----Cc-EEe--eccchHHHHHhhhcccceEE
Confidence 4789999996 9999999987777899999999988876653332 1 11 122 222 2344455556799999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
.+.+.
T Consensus 97 ~~~~~ 101 (168)
T d1piwa2 97 VCASS 101 (168)
T ss_dssp ECCSC
T ss_pred EEecC
Confidence 98765
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=0.00016 Score=55.19 Aligned_cols=97 Identities=22% Similarity=0.121 Sum_probs=61.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-CccEEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-GCDGVCH 87 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~vih 87 (328)
+.+|||+||+|.+|...++.....|.+|+++.+++++.+.+..+ +...+ .|-.+.+..+.+.+ ..|.+|+
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l--------Gad~v-i~~~~~~~~~~l~~~~~~~vvD 102 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL--------GASRV-LPRDEFAESRPLEKQVWAGAID 102 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH--------TEEEE-EEGGGSSSCCSSCCCCEEEEEE
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh--------ccccc-cccccHHHHHHHHhhcCCeeEE
Confidence 34899999999999999998888999999999998886654433 22222 12222222222222 3688888
Q ss_pred ccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchh
Q 020266 88 TASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMA 134 (328)
Q Consensus 88 ~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~ 134 (328)
+.+. .. ....++.++. -.++|.++..+
T Consensus 103 ~Vgg----------~~-------~~~~l~~l~~---~Griv~~G~~~ 129 (177)
T d1o89a2 103 TVGD----------KV-------LAKVLAQMNY---GGCVAACGLAG 129 (177)
T ss_dssp SSCH----------HH-------HHHHHHTEEE---EEEEEECCCTT
T ss_pred Ecch----------HH-------HHHHHHHhcc---ccceEeecccC
Confidence 7652 11 2233444433 36899888753
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.29 E-value=0.00011 Score=55.23 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=49.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|||-|+| .|.+|+.+++.|++.||+|++.+|++++.+.+... .... ..+..++++++|+||-+-
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~--------~~~~-------~~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA--------GAET-------ASTAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TCEE-------CSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHh--------hhhh-------cccHHHHHhCCCeEEEEc
Confidence 5699998 69999999999999999999999987766654432 1111 145667778899998764
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.00039 Score=51.61 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=57.1
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEEcc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHTA 89 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~a 89 (328)
+|+|.|. |-+|..+++.|.+.|++|+++..++++........ ...++.++.||.++++.++++ ++.+|.||-+.
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~----~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR----LGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH----HCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHh----hcCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 6999997 89999999999999999999998876533322211 124789999999999887654 45789998664
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.22 E-value=0.0011 Score=49.82 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=49.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCc--CchHHhh-----C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEE--GSFDSIV-----D 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~-----~ 80 (328)
.+.+|+|+| +|.+|...+..+...|.+|+++++++.+.+...++ ..... +..|-.+. .+..+.+ .
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~------ga~~~-~~~~~~~~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC------GADVT-LVVDPAKEEESSIIERIRSAIGD 97 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT------TCSEE-EECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHHc------CCcEE-Eeccccccccchhhhhhhccccc
Confidence 467899997 69999999998888999999999987765443222 11222 22232222 2222222 2
Q ss_pred CccEEEEccCC
Q 020266 81 GCDGVCHTASP 91 (328)
Q Consensus 81 ~~d~vih~a~~ 91 (328)
++|+||.+++.
T Consensus 98 g~D~vid~~g~ 108 (170)
T d1e3ja2 98 LPNVTIDCSGN 108 (170)
T ss_dssp CCSEEEECSCC
T ss_pred CCceeeecCCC
Confidence 68999999874
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.21 E-value=0.00022 Score=52.38 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=25.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC----CeEEEEecC
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG----YTVKASVRD 42 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g----~~V~~~~r~ 42 (328)
|||.|.||||++|+.|++.|+++. .++..+..+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~ 37 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS 37 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc
Confidence 579999999999999999888753 355554443
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.19 E-value=0.00019 Score=53.42 Aligned_cols=65 Identities=23% Similarity=0.164 Sum_probs=49.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|||.+.| +|-+|+++++.|++.|++|++..|+.++...+...++. . -..+..++++++|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~-------~-------~~~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLAL-------P-------YAMSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTC-------C-------BCSSHHHHHHTCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccce-------e-------eechhhhhhhccceeeeec
Confidence 5799998 69999999999999999999999987766655443321 1 1135677788899998654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.15 E-value=0.00058 Score=51.67 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=55.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.++|+|+|.|+ |..|++++..|.+.+.+|+++.|+.++.+.+...+... ..+..+..|-. .+..+|+||
T Consensus 16 ~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~~~~~-------~~~~~diiI 84 (171)
T d1p77a1 16 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQAVSMDSI-------PLQTYDLVI 84 (171)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEEEEGGGC-------CCSCCSEEE
T ss_pred CCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc---cccchhhhccc-------cccccceee
Confidence 46889999996 88899999999998889999999988877776655432 24555544422 135689999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
|+...
T Consensus 85 N~tp~ 89 (171)
T d1p77a1 85 NATSA 89 (171)
T ss_dssp ECCCC
T ss_pred ecccc
Confidence 99754
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.01 E-value=0.0043 Score=44.21 Aligned_cols=89 Identities=19% Similarity=0.102 Sum_probs=60.0
Q ss_pred cCCCCeEEEECCc---cHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCC
Q 020266 6 AAAGKVVCVTGAS---GYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDG 81 (328)
Q Consensus 6 ~~~~~~vlVtGat---G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (328)
.++.++|.|+|+| +-.|..+.+.|.+.| ++|+.+..+.+.. ..+.-+.++.++-..
T Consensus 5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i--------------------~G~~~y~sl~dlp~~ 64 (129)
T d2csua1 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV--------------------QGVKAYKSVKDIPDE 64 (129)
T ss_dssp TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE--------------------TTEECBSSTTSCSSC
T ss_pred hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc--------------------CCeEeecchhhcCCC
Confidence 3468999999998 999999999998766 6788776543221 111223444444556
Q ss_pred ccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 82 CDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+|.++-+.. ...+..+++.|.+. +++.+|.+|+
T Consensus 65 vDlvvi~vp-----------------~~~~~~~~~~~~~~-g~~~~vi~s~ 97 (129)
T d2csua1 65 IDLAIIVVP-----------------KRFVKDTLIQCGEK-GVKGVVIITA 97 (129)
T ss_dssp CSEEEECSC-----------------HHHHHHHHHHHHHH-TCCEEEECCC
T ss_pred CceEEEecC-----------------hHHhHHHHHHHHHc-CCCEEEEecc
Confidence 888875532 22345667777776 7888888887
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.00 E-value=0.0021 Score=44.75 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=64.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
..++|+|+|+|+ |-+|..-++.|++.|.+|++++....+.. ..+. ...++++...+..+. -+.+++.|
T Consensus 9 ~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~~~--~~~~----~~~~i~~~~~~~~~~-----dl~~~~lv 76 (113)
T d1pjqa1 9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIPQF--TVWA----NEGMLTLVEGPFDET-----LLDSCWLA 76 (113)
T ss_dssp CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCHHH--HHHH----TTTSCEEEESSCCGG-----GGTTCSEE
T ss_pred EeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCChHH--HHHH----hcCCceeeccCCCHH-----HhCCCcEE
Confidence 456999999995 99999999999999999999887554322 1221 124677776665432 24567888
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+-+.+. . +. ...+.+.|++. + .+|++.+
T Consensus 77 ~~at~d-------~-----~~----n~~i~~~a~~~-~--ilVNv~D 104 (113)
T d1pjqa1 77 IAATDD-------D-----TV----NQRVSDAAESR-R--IFCNVVD 104 (113)
T ss_dssp EECCSC-------H-----HH----HHHHHHHHHHT-T--CEEEETT
T ss_pred eecCCC-------H-----HH----HHHHHHHHHHc-C--CEEEeCC
Confidence 755421 1 11 24667778776 3 4677665
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.96 E-value=0.00035 Score=53.42 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=49.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh--hhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP--KKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
|+|.|.|+ |-.|.+++..|.+.|++|.+..|..++. +.+........ ........++.-..++.++++++|+||-
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~ad~Ii~ 77 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPR--LGVKLNGVEIFWPEQLEKCLENAEVVLL 77 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTT--TTBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhh--hcchhccccccccccHHHHHhccchhhc
Confidence 68999995 9999999999999999999998854431 11111110000 0111111122334667888999999987
Q ss_pred cc
Q 020266 88 TA 89 (328)
Q Consensus 88 ~a 89 (328)
+.
T Consensus 78 av 79 (180)
T d1txga2 78 GV 79 (180)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.95 E-value=0.00069 Score=51.03 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=48.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
++++|+|.|+ |..|++++..|.+.|. +|.++.|+.++...+...+. ...+. +.. ...+|+||
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~-------~~~~~-~~~--------~~~~DliI 78 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG-------YAYIN-SLE--------NQQADILV 78 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT-------CEEES-CCT--------TCCCSEEE
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh-------hhhhh-ccc--------ccchhhhe
Confidence 5789999996 9999999999999996 79999999877766655432 12211 111 13579999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
|+...
T Consensus 79 NaTpi 83 (167)
T d1npya1 79 NVTSI 83 (167)
T ss_dssp ECSST
T ss_pred ecccc
Confidence 98653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0008 Score=50.68 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=52.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
.+.+|+|.|+ |.+|...+..+...|.+++++++++++.+...++ . ... ..|..+.+......+++|++|.
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l-G-------ad~-~i~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL-G-------ADE-VVNSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH-T-------CSE-EEETTCHHHHHTTTTCEEEEEE
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHHhcc-C-------CcE-EEECchhhHHHHhcCCCceeee
Confidence 4789999986 8899999988888899999999877665433222 1 111 1344555555555568999999
Q ss_pred ccCC
Q 020266 88 TASP 91 (328)
Q Consensus 88 ~a~~ 91 (328)
+.+.
T Consensus 100 ~~g~ 103 (168)
T d1uufa2 100 TVAA 103 (168)
T ss_dssp CCSS
T ss_pred eeec
Confidence 9874
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.92 E-value=0.00072 Score=50.04 Aligned_cols=64 Identities=23% Similarity=0.203 Sum_probs=46.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEcc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
|||.|+| .|.+|+.+++.|+++||+|.+.++++++.......- + .+. ++..++++.+|+||-+.
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~--------~-----~~~--~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART--------V-----GVT--ETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH--------H-----TCE--ECCHHHHHTSSEEEECS
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhc--------c-----ccc--ccHHHHHhhcCeEEEEe
Confidence 5799997 699999999999999999999888776554322210 1 111 23456778899999764
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.92 E-value=0.0024 Score=48.60 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=49.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+.+|+|.|.| .|-||+.+++.|..-|.+|++.+|++.+.. ..-.++++++++.+|+|+
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~---------------------~~~~~~l~ell~~sDiv~ 97 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGP---------------------WRFTNSLEEALREARAAV 97 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSS---------------------SCCBSCSHHHHTTCSEEE
T ss_pred ccCceEEEec-cccccccceeeeeccccccccccccccccc---------------------eeeeechhhhhhccchhh
Confidence 5689999999 599999999999999999999998764321 112246788999999998
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
-+...
T Consensus 98 ~~~pl 102 (181)
T d1qp8a1 98 CALPL 102 (181)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 76543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00063 Score=52.54 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=35.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (328)
|+-|+|.|.|| |.+|+.++..++..|++|++.+++++..+
T Consensus 2 ~~IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~ 41 (192)
T d1f0ya2 2 IIVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILA 41 (192)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred ceeEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence 45689999997 99999999999999999999999876544
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.73 E-value=0.00069 Score=51.13 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCCCChhh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDPNDPKK 48 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~ 48 (328)
||+|+|+| .|.+|..+++.|.+.|+ +|++.+|+++..+.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~ 41 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISK 41 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHH
Confidence 57899998 59999999999999985 67888887655443
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.71 E-value=0.00054 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.8
Q ss_pred eEEEECCccHHHHHHHHHHHHCCC
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGY 34 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~ 34 (328)
||.|.||||++|..|++.|.++++
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCS
T ss_pred EEEEECCCcHHHHHHHHHHHcCCC
Confidence 799999999999999998888754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.71 E-value=0.001 Score=50.15 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=50.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----G 81 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~ 81 (328)
.+.+|+|+|++|.+|...+..+...| .+|++.++++++.+...+. + .. .. .|.++.+..++..+ +
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----G--a~-~~--i~~~~~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----G--AD-YV--INASMQDPLAEIRRITESKG 97 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----T--CS-EE--EETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----C--Cc-ee--eccCCcCHHHHHHHHhhccc
Confidence 46789999999999999999888888 5888888886554443322 1 11 22 23344444444332 5
Q ss_pred ccEEEEccCC
Q 020266 82 CDGVCHTASP 91 (328)
Q Consensus 82 ~d~vih~a~~ 91 (328)
+|+||.+++.
T Consensus 98 ~d~vid~~g~ 107 (170)
T d1jvba2 98 VDAVIDLNNS 107 (170)
T ss_dssp EEEEEESCCC
T ss_pred chhhhccccc
Confidence 8999999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.66 E-value=0.0011 Score=50.61 Aligned_cols=40 Identities=35% Similarity=0.390 Sum_probs=33.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKK 48 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~ 48 (328)
.+.+|+|+|+ |-+|...+..+...|. +|+++++++++.+.
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~ 68 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKL 68 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHH
T ss_pred CCCEEEEECC-Cccchhheecccccccccccccccccccccc
Confidence 4789999997 8999999999988997 79999998766544
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.0015 Score=43.81 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=50.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.+++|+|+|.|. |-.|..+++.|.+.|++|++.+.+...... ... .....+..+... ...++++|.|
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~--~~~-----~~~~~~~~~~~~-----~~~~~~~d~v 68 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGL--DKL-----PEAVERHTGSLN-----DEWLMAADLI 68 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTG--GGS-----CTTSCEEESBCC-----HHHHHHCSEE
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhH--HHH-----hhccceeecccc-----hhhhccCCEE
Confidence 467899999997 889999999999999999999985543221 111 123334444321 2345678999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|-..|.
T Consensus 69 i~SPGi 74 (93)
T d2jfga1 69 VASPGI 74 (93)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 987775
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.61 E-value=0.0038 Score=47.20 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=51.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
..+|-|+| .|..|..+++.|++.||+|++.+|++++.+.+....... .... -....+++.+.+..+|.++-+
T Consensus 2 ~~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---~~~~----~a~~~~~~~~~~~~~~~ii~~ 73 (176)
T d2pgda2 2 QADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKG---TKVL----GAHSLEEMVSKLKKPRRIILL 73 (176)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTT---SSCE----ECSSHHHHHHHBCSSCEEEEC
T ss_pred CCcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccc---cccc----chhhhhhhhhhhcccceEEEe
Confidence 46799999 599999999999999999999999998776654431100 0011 122345566677788888876
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
.
T Consensus 74 ~ 74 (176)
T d2pgda2 74 V 74 (176)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.59 E-value=0.0018 Score=49.93 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=49.7
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+|.|.| .|-||+.+++.|..-|.+|++.++....... .+.....++.++++.+|+|+
T Consensus 41 l~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~------------------~~~~~~~~l~~~l~~sDii~ 101 (197)
T d1j4aa1 41 VRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELE------------------KKGYYVDSLDDLYKQADVIS 101 (197)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHH------------------HTTCBCSCHHHHHHHCSEEE
T ss_pred ccCCeEEEec-ccccchhHHHhHhhhcccccccCcccccccc------------------cceeeecccccccccccccc
Confidence 4589999999 6999999999999889999999876543221 01122356888888899888
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
.+...
T Consensus 102 ~~~pl 106 (197)
T d1j4aa1 102 LHVPD 106 (197)
T ss_dssp ECSCC
T ss_pred ccCCc
Confidence 76644
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.0064 Score=46.40 Aligned_cols=65 Identities=22% Similarity=0.146 Sum_probs=48.8
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+++|.|.| .|.||+.+++.|..-|.+|++.++....... .. ...++++++++.+|+|+
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~------------~~-------~~~~~l~ell~~sDii~ 101 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLG------------NA-------TQVQHLSDLLNMSDVVS 101 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCT------------TC-------EECSCHHHHHHHCSEEE
T ss_pred ccceEEEEee-cccchhhhhhhcccccceEeeccccccchhh------------hh-------hhhhhHHHHHhhcccee
Confidence 4588999998 6999999999999999999999986543221 11 11246778888889887
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
-+...
T Consensus 102 i~~pl 106 (188)
T d1sc6a1 102 LHVPE 106 (188)
T ss_dssp ECCCS
T ss_pred ecccC
Confidence 76654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=96.52 E-value=0.00071 Score=50.08 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=35.1
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhh
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHL 52 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~ 52 (328)
|||.++|+ |-+|+++++.|++.| ++|.+.+|++++.+.+...
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~ 43 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE 43 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh
Confidence 57999986 999999999999887 9999999998766665443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.47 E-value=0.0011 Score=50.81 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=54.7
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEE-EecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh----CCccE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV----DGCDG 84 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~----~~~d~ 84 (328)
.+|||+||+|.+|...++.....|.++++ +++++++...+..... .. ...|.++++..+.+- +++|+
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~g-------ad-~vi~~~~~~~~~~~~~~~~~GvDv 103 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELG-------FD-AAVNYKTGNVAEQLREACPGGVDV 103 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSC-------CS-EEEETTSSCHHHHHHHHCTTCEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhccc-------ce-EEeeccchhHHHHHHHHhccCceE
Confidence 67999999999999999887778976554 4555444433322211 11 223545443322222 26999
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhh
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAV 136 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~ 136 (328)
|+.+.|. +.+ ...++..+. .+++|.+++++.+
T Consensus 104 v~D~vGg----------~~~-------~~~~~~l~~---~G~iv~~G~~s~~ 135 (187)
T d1vj1a2 104 YFDNVGG----------DIS-------NTVISQMNE---NSHIILCGQISQY 135 (187)
T ss_dssp EEESSCH----------HHH-------HHHHTTEEE---EEEEEEC------
T ss_pred EEecCCc----------hhH-------HHHhhhccc---cccEEEecccccc
Confidence 9998762 111 122333333 3689999886543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.43 E-value=0.002 Score=46.01 Aligned_cols=69 Identities=19% Similarity=0.170 Sum_probs=52.4
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh-hCCccEEEEc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI-VDGCDGVCHT 88 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 88 (328)
|+|+|.|. |-+|+.+++.| +|++|.++..++.....+.. .++.++.||.++++.+.++ ++.++.+|=+
T Consensus 1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~--------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~ 69 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVRKKVLR--------SGANFVHGDPTRVSDLEKANVRGARAVIVN 69 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHHHHHHH--------TTCEEEESCTTSHHHHHHTTCTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHHHHHHh--------cCccccccccCCHHHHHHhhhhcCcEEEEe
Confidence 57899996 88899999998 46788888887766544322 3688999999999877764 3578888854
Q ss_pred c
Q 020266 89 A 89 (328)
Q Consensus 89 a 89 (328)
.
T Consensus 70 ~ 70 (129)
T d2fy8a1 70 L 70 (129)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.43 E-value=0.0044 Score=45.95 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=60.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCH 87 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 87 (328)
..-+|+|.|+ |-.|..-++.....|.+|.+++++.+..+.+...+. ..++.. ..+.+.+.+.++++|+||.
T Consensus 31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~---~~~~~~l~~~~~~aDivI~ 101 (168)
T d1pjca1 31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELL---YSNSAEIETAVAEADLLIG 101 (168)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEE---ECCHHHHHHHHHTCSEEEE
T ss_pred CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----ccceee---hhhhhhHHHhhccCcEEEE
Confidence 4678999996 999999999999999999999998877766655542 223332 3445678888889999999
Q ss_pred ccCCCCC
Q 020266 88 TASPFYH 94 (328)
Q Consensus 88 ~a~~~~~ 94 (328)
++-....
T Consensus 102 aalipG~ 108 (168)
T d1pjca1 102 AVLVPGR 108 (168)
T ss_dssp CCCCTTS
T ss_pred eeecCCc
Confidence 9876443
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.0044 Score=45.91 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=46.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+|+|.|.+..+|+.|+..|.++|.+|+....... ++.+..+++|+||
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~-----------------------------~l~~~~~~ADivI 85 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK-----------------------------NLRHHVENADLLI 85 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS-----------------------------CHHHHHHHCSEEE
T ss_pred cccceEEEEeccccccHHHHHHHHHhhccccccccccc-----------------------------hhHHHHhhhhHhh
Confidence 46899999999999999999999999999887755432 2344456689999
Q ss_pred EccCCCCC
Q 020266 87 HTASPFYH 94 (328)
Q Consensus 87 h~a~~~~~ 94 (328)
.++|....
T Consensus 86 ~a~G~p~~ 93 (166)
T d1b0aa1 86 VAVGKPGF 93 (166)
T ss_dssp ECSCCTTC
T ss_pred hhccCccc
Confidence 98886433
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.33 E-value=0.0034 Score=44.24 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=32.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
..++++|.|| |++|-.++..|.+.|.+|.++.+.+.
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence 3689999996 99999999999999999999998754
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.32 E-value=0.0057 Score=46.06 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=48.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-----CC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-----DG 81 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~ 81 (328)
.+.+|+|.|+ |.+|...+..+...| .+|+++++++++.+...+. ......-+-...+.+.+.. .+
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~--------Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV--------GATECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------TCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh--------CCeeEEecCCchhHHHHHHHHHhcCC
Confidence 4778999999 568999998888887 5889999988776543332 1111111111223333333 27
Q ss_pred ccEEEEccCC
Q 020266 82 CDGVCHTASP 91 (328)
Q Consensus 82 ~d~vih~a~~ 91 (328)
+|++|.+.|.
T Consensus 99 ~D~vid~~G~ 108 (176)
T d2jhfa2 99 VDFSFEVIGR 108 (176)
T ss_dssp BSEEEECSCC
T ss_pred CCEEEecCCc
Confidence 9999999874
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.29 E-value=0.0019 Score=48.96 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=36.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhh
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL 52 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~ 52 (328)
|+|-|+| .|..|.++++.|++.||+|.+.+|++++.+.+.+.
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~ 43 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA 43 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence 4699998 79999999999999999999999998887766554
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0052 Score=46.08 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=49.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEE-EEEccCCCcCchHHhh-----C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQ-LFKANLLEEGSFDSIV-----D 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~Dl~~~~~~~~~~-----~ 80 (328)
.+.+|+|.|+ |.+|...+..+...|. +|+++++++.+.+...+ + +.. .+..+-.++....+.+ .
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~-~-------Ga~~~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE-I-------GADLVLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-T-------TCSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH-h-------CCcccccccccccccccccccccCCC
Confidence 4678999986 9999999999988998 69999988765543222 1 121 2222222333333332 2
Q ss_pred CccEEEEccCC
Q 020266 81 GCDGVCHTASP 91 (328)
Q Consensus 81 ~~d~vih~a~~ 91 (328)
++|+||.+.|.
T Consensus 97 g~Dvvid~~G~ 107 (171)
T d1pl8a2 97 KPEVTIECTGA 107 (171)
T ss_dssp CCSEEEECSCC
T ss_pred CceEEEeccCC
Confidence 68999999874
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.23 E-value=0.0032 Score=50.29 Aligned_cols=34 Identities=35% Similarity=0.454 Sum_probs=31.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
.|+|+|+|| |..|-..+.+|.++|++|.++.|..
T Consensus 6 ~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGS-GVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 468999996 9999999999999999999999864
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.22 E-value=0.0045 Score=43.72 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=32.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
+.++|+|.|| |++|-.++..|.+.|.+|.++.+.+.
T Consensus 29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCc
Confidence 4789999985 99999999999999999999988653
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.0032 Score=46.54 Aligned_cols=69 Identities=22% Similarity=0.189 Sum_probs=52.2
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.+.+|++.|.| .|.||+.+++.|...|.+|++..+++.+ .++... |-.....+++++...|+|
T Consensus 21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~--al~A~~--------------dG~~v~~~~~a~~~adiv 83 (163)
T d1li4a1 21 MIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPIN--ALQAAM--------------EGYEVTTMDEACQEGNIF 83 (163)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH--HHHHHH--------------TTCEECCHHHHTTTCSEE
T ss_pred eecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccch--hHHhhc--------------CceEeeehhhhhhhccEE
Confidence 34689999999 8999999999999999999999997643 222221 222224567788889999
Q ss_pred EEccCC
Q 020266 86 CHTASP 91 (328)
Q Consensus 86 ih~a~~ 91 (328)
|-+.+.
T Consensus 84 vtaTGn 89 (163)
T d1li4a1 84 VTTTGC 89 (163)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 988774
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.01 Score=44.23 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=46.5
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+|+|.|.+..+|+.|+..|+++|.+|......... +.+..+++|+||
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~-----------------------------l~~~~~~aDivi 87 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH-----------------------------LDEEVNKGDILV 87 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS-----------------------------HHHHHTTCSEEE
T ss_pred cccceEEEEecCCccchHHHHHHHhccCceEEEeccccc-----------------------------HHHHHhhccchh
Confidence 468999999999999999999999999999887765433 233456788998
Q ss_pred EccCCCC
Q 020266 87 HTASPFY 93 (328)
Q Consensus 87 h~a~~~~ 93 (328)
..+|...
T Consensus 88 ~a~G~~~ 94 (170)
T d1a4ia1 88 VATGQPE 94 (170)
T ss_dssp ECCCCTT
T ss_pred hcccccc
Confidence 8887643
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.12 E-value=0.0015 Score=49.58 Aligned_cols=78 Identities=17% Similarity=0.099 Sum_probs=51.0
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.++|+|+|.|+ |..+++++..|.+.| +|.++.|+.++.+.+...+...........+. ..++.......|+||
T Consensus 16 ~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~dliI 88 (177)
T d1nvta1 16 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVK-----FSGLDVDLDGVDIII 88 (177)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEE-----EECTTCCCTTCCEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhh-----hhhhhhccchhhhhc
Confidence 57899999995 889999999997767 99999999888777655443221111111111 112222345689999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
|+...
T Consensus 89 n~tp~ 93 (177)
T d1nvta1 89 NATPI 93 (177)
T ss_dssp ECSCT
T ss_pred cCCcc
Confidence 98754
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.12 E-value=0.0049 Score=43.05 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=32.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
.++++|.|| |++|-.++..|.+.|.+|.++.|.+.
T Consensus 22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence 689999996 99999999999999999999998654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=96.10 E-value=0.0044 Score=47.54 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=49.4
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+|.|.| .|-||+.+++.|..-|.+|++.++......... ..+....++.++++.+|+|+
T Consensus 47 L~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~----------------~~~~~~~~l~~ll~~sD~i~ 109 (193)
T d1mx3a1 47 IRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERA----------------LGLQRVSTLQDLLFHSDCVT 109 (193)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH----------------HTCEECSSHHHHHHHCSEEE
T ss_pred eeCceEEEec-cccccccceeeeeccccceeeccCcccccchhh----------------hccccccchhhccccCCEEE
Confidence 4689999998 699999999999988999999998655432210 01122356778888888887
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
-+...
T Consensus 110 ~~~pl 114 (193)
T d1mx3a1 110 LHCGL 114 (193)
T ss_dssp ECCCC
T ss_pred Eeecc
Confidence 66543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.08 E-value=0.0031 Score=47.64 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=48.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchH---HhhC--C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFD---SIVD--G 81 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~--~ 81 (328)
++.+|+|.|+ |.+|...+..+...|. +|+++++++.+.+...++ .. ..+ .|..+.+..+ ++.. +
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l-Ga------~~~--i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY-GA------TDI--LNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH-TC------SEE--ECGGGSCHHHHHHHHTTTSC
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHHhh-Cc------ccc--ccccchhHHHHHHHHhhccC
Confidence 4778999986 9999999988888896 699999876654443222 11 112 2333433333 3332 5
Q ss_pred ccEEEEccCC
Q 020266 82 CDGVCHTASP 91 (328)
Q Consensus 82 ~d~vih~a~~ 91 (328)
+|+||.+++.
T Consensus 97 ~D~vid~~g~ 106 (174)
T d1jqba2 97 VDRVIMAGGG 106 (174)
T ss_dssp EEEEEECSSC
T ss_pred cceEEEccCC
Confidence 8999999874
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.06 E-value=0.004 Score=47.63 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=33.8
Q ss_pred CCeEEE-ECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhh
Q 020266 9 GKVVCV-TGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR 50 (328)
Q Consensus 9 ~~~vlV-tGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 50 (328)
+.+++| +||+|.+|...+......|.+|+++.|+.++.+...
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~ 71 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVV 71 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHH
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHH
Confidence 456776 599999999999887778999999999877655433
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.02 E-value=0.0082 Score=45.06 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=46.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCC-CcCchHHhh-----C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLL-EEGSFDSIV-----D 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~-----~ 80 (328)
.+.+|+|.|+ |.+|...+..+...|. .|+++++++++.+. .+.+. ...+ .|.. +.+...+.+ .
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~-ak~lG-------a~~~-i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFAR-AKEFG-------ATEC-INPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHHT-------CSEE-ECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHH-HHHhC-------CcEE-EeCCchhhHHHHHHHHHcCC
Confidence 4778999998 5789999988888885 56666666655443 22221 1111 1222 223444433 2
Q ss_pred CccEEEEccCC
Q 020266 81 GCDGVCHTASP 91 (328)
Q Consensus 81 ~~d~vih~a~~ 91 (328)
++|+||.+.|.
T Consensus 98 g~D~vid~~G~ 108 (176)
T d2fzwa2 98 GVDYSFECIGN 108 (176)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEeeecCCC
Confidence 69999999874
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.94 E-value=0.0052 Score=42.95 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=32.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
..++|+|.|| |++|-.++..|.+.|.+|.++.|...
T Consensus 21 ~p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 21 ESKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CCCEEEEECC-chHHHHHHHHHHhccccceeeehhcc
Confidence 3689999996 99999999999999999999998653
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=95.91 E-value=0.0055 Score=45.97 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=42.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEe-cCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSR-GYTVKASV-RDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
|+..||.|.| +|++|+.+++.|.+. +.++.++. |+.+.... ..+. . ..+.....+++|+
T Consensus 1 M~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~-----------~~~~--~-----~~~~~~~~~~~D~ 61 (170)
T d1f06a1 1 MTNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK-----------TPVF--D-----VADVDKHADDVDV 61 (170)
T ss_dssp CCCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS-----------SCEE--E-----GGGGGGTTTTCSE
T ss_pred CCcceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEecccccccc-----------cccc--c-----chhhhhhccccce
Confidence 4456799999 599999999999886 67877654 44332211 1111 1 1234445567999
Q ss_pred EEEccCC
Q 020266 85 VCHTASP 91 (328)
Q Consensus 85 vih~a~~ 91 (328)
|+.+...
T Consensus 62 Vvi~tp~ 68 (170)
T d1f06a1 62 LFLCMGS 68 (170)
T ss_dssp EEECSCT
T ss_pred EEEeCCC
Confidence 9987654
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.91 E-value=0.015 Score=44.30 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=50.3
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.+++++.|.| .|-||+.+++.|..-|.+|.+.++........... .....+++.++++.+|+|+
T Consensus 45 l~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~---------------~~~~~~~l~~ll~~sD~v~ 108 (191)
T d1gdha1 45 LDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASY---------------QATFHDSLDSLLSVSQFFS 108 (191)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHH---------------TCEECSSHHHHHHHCSEEE
T ss_pred ecccceEEee-cccchHHHHHHHHhhccccccccccccccchhhcc---------------cccccCCHHHHHhhCCeEE
Confidence 3579999999 59999999999988899999999876654332111 1122356788888899887
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
-+...
T Consensus 109 l~~pl 113 (191)
T d1gdha1 109 LNAPS 113 (191)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 65543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0063 Score=42.43 Aligned_cols=35 Identities=26% Similarity=0.182 Sum_probs=31.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
.++|+|.|| |++|-.++..|.+.|++|.++.|.+.
T Consensus 21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecch
Confidence 578999996 99999999999999999999998654
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.0038 Score=45.81 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=32.5
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecC
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (328)
.+++|+|||+|| |.+|..-++.|++.|.+|++++-.
T Consensus 10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467999999997 999999999999999999999753
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.88 E-value=0.0065 Score=42.80 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
.++++|.|| |+||-.++..|.+.|.+|.++.|.+.
T Consensus 23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECC-CchHHHHHHHHHhhCcceeEEEeccc
Confidence 689999996 99999999999999999999988654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.88 E-value=0.024 Score=43.30 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=47.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc---hHHhhC--C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS---FDSIVD--G 81 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~--~ 81 (328)
.+.+|+|.|+ |-+|...+..+...|. +|+++++++++.+...+. +...+ -|-.+.+. +.++.. +
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~--------Ga~~~-~~~~~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ--------GFEIA-DLSLDTPLHEQIAALLGEPE 94 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--------TCEEE-ETTSSSCHHHHHHHHHSSSC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhhc--------cccEE-EeCCCcCHHHHHHHHhCCCC
Confidence 4779999986 9999888877777776 688888876554432221 23332 23333332 223323 6
Q ss_pred ccEEEEccCC
Q 020266 82 CDGVCHTASP 91 (328)
Q Consensus 82 ~d~vih~a~~ 91 (328)
+|++|.+.|.
T Consensus 95 ~D~vid~vG~ 104 (195)
T d1kola2 95 VDCAVDAVGF 104 (195)
T ss_dssp EEEEEECCCT
T ss_pred cEEEEECccc
Confidence 8999999885
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=95.85 E-value=0.0071 Score=46.59 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=48.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|+|.|.| .|-||+.+++.|..-|.+|++.++....... ..+ +..++.++++.+|+|+
T Consensus 43 l~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----------~~~--------~~~~l~~l~~~~D~v~ 102 (199)
T d1dxya1 43 LGQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH-----------PDF--------DYVSLEDLFKQSDVID 102 (199)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSCC-----------TTC--------EECCHHHHHHHCSEEE
T ss_pred ccceeeeeee-cccccccccccccccceeeeccCCccchhhh-----------cch--------hHHHHHHHHHhcccce
Confidence 3578999999 6999999999999999999999986544221 111 1245778888899888
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
-+...
T Consensus 103 ~~~pl 107 (199)
T d1dxya1 103 LHVPG 107 (199)
T ss_dssp ECCCC
T ss_pred eeecc
Confidence 76543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.84 E-value=0.017 Score=43.91 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=50.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+++|.|.| .|-||+.+++.|..-|.+|...++........... .+....++.++++.+|+|+
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~---------------~~~~~~~l~~~l~~sD~v~ 105 (188)
T d2naca1 42 LEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL---------------NLTWHATREDMYPVCDVVT 105 (188)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH---------------TCEECSSHHHHGGGCSEEE
T ss_pred ccccceeecc-ccccchhhhhhhhccCceEEEEeeccccccccccc---------------cccccCCHHHHHHhccchh
Confidence 4588999999 69999999999988899999999976554331111 1222356778888888886
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
-+...
T Consensus 106 ~~~pl 110 (188)
T d2naca1 106 LNCPL 110 (188)
T ss_dssp ECSCC
T ss_pred hcccc
Confidence 65543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.84 E-value=0.014 Score=43.80 Aligned_cols=74 Identities=18% Similarity=0.117 Sum_probs=47.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCC-cCchHHhh-----C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE-EGSFDSIV-----D 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~-----~ 80 (328)
.+.+|+|+|+ |.||...+..+...|. .|++.++++++.+. .+.+. ...+ .|..+ .+...... .
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~-a~~~G-------a~~~-i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPK-AKALG-------ATDC-LNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHTT-------CSEE-ECGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHH-HHHhC-------CCcc-cCCccchhhhhhhHhhhhcC
Confidence 4678999985 9999999999999997 57777887765433 33221 1111 12222 22333333 3
Q ss_pred CccEEEEccCC
Q 020266 81 GCDGVCHTASP 91 (328)
Q Consensus 81 ~~d~vih~a~~ 91 (328)
++|+||.++|.
T Consensus 98 G~d~vie~~G~ 108 (174)
T d1e3ia2 98 GVDYSLDCAGT 108 (174)
T ss_dssp CBSEEEESSCC
T ss_pred CCcEEEEeccc
Confidence 79999999874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.84 E-value=0.0094 Score=44.78 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=46.1
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEE-EEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh---C-Cc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVK-ASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV---D-GC 82 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~-~~ 82 (328)
.+.+|+|.|+ |.+|...+..+...|.+++ +.++++.+.+...+ +. -..+ .|..+.+..+++. . ++
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~-~G------a~~~--i~~~~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ-LG------ATHV--INSKTQDPVAAIKEITDGGV 97 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH-HT------CSEE--EETTTSCHHHHHHHHTTSCE
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHH-cC------CeEE--EeCCCcCHHHHHHHHcCCCC
Confidence 4778999997 9999999988878887654 45555544333222 21 1122 2444544333322 2 58
Q ss_pred cEEEEccCC
Q 020266 83 DGVCHTASP 91 (328)
Q Consensus 83 d~vih~a~~ 91 (328)
|+||.+.+.
T Consensus 98 D~vid~~G~ 106 (174)
T d1f8fa2 98 NFALESTGS 106 (174)
T ss_dssp EEEEECSCC
T ss_pred cEEEEcCCc
Confidence 999999874
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.80 E-value=0.0077 Score=42.76 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=47.3
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----Ccc
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d 83 (328)
|||.|.|++|-.|+.+++.+.++|+++.+. +++.... + .... +..|++.|+...+.++ ++-
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~~--~--------~~~D---VvIDFS~p~~~~~~l~~~~~~~~p 67 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVEE--L--------DSPD---VVIDFSSPEALPKTVDLCKKYRAG 67 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEEE--C--------SCCS---EEEECSCGGGHHHHHHHHHHHTCE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHHH--h--------ccCC---EEEEecCHHHHHHHHHHHHhcCCC
Confidence 579999999999999999999999997654 3322111 0 0112 3469999988777665 566
Q ss_pred EEEEccC
Q 020266 84 GVCHTAS 90 (328)
Q Consensus 84 ~vih~a~ 90 (328)
+|+=..|
T Consensus 68 ~ViGTTG 74 (128)
T d1vm6a3 68 LVLGTTA 74 (128)
T ss_dssp EEECCCS
T ss_pred EEEEcCC
Confidence 7765555
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.78 E-value=0.003 Score=48.30 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=34.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (328)
+-++|.|.|| |.+|+.++..++..|++|++++++++..+
T Consensus 3 ~I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~ 41 (186)
T d1wdka3 3 DVKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIE 41 (186)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHh
Confidence 4578999997 99999999999999999999999876543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.0069 Score=38.67 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (328)
||+|.|.|| |.+|+-++..-...|++|++++-+.+...
T Consensus 1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~~pa 38 (78)
T d3etja2 1 MKQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAEPAA 38 (78)
T ss_dssp CEEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSCGGG
T ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCCCcc
Confidence 579999995 99999999999999999999998765543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.74 E-value=0.036 Score=36.89 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=45.9
Q ss_pred CCCeEEEECCccHHH-HHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGASGYIA-SWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGatG~iG-~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
+.|+|.+.|-. .+| ++|++.|.++|++|.+.++.....- ..+.. .++.+..++-. +.++++|.||
T Consensus 7 ~~~~ihfiGig-G~GMs~LA~~L~~~G~~VsGSD~~~~~~~--~~L~~-----~Gi~v~~g~~~------~~i~~~d~vV 72 (96)
T d1p3da1 7 RVQQIHFIGIG-GAGMSGIAEILLNEGYQISGSDIADGVVT--QRLAQ-----AGAKIYIGHAE------EHIEGASVVV 72 (96)
T ss_dssp TCCEEEEETTT-STTHHHHHHHHHHHTCEEEEEESCCSHHH--HHHHH-----TTCEEEESCCG------GGGTTCSEEE
T ss_pred hCCEEEEEEEC-HHHHHHHHHHHHhCCCEEEEEeCCCChhh--hHHHH-----CCCeEEECCcc------ccCCCCCEEE
Confidence 46789888753 334 7789999999999999998754322 12211 24555554432 2246789999
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
...|.
T Consensus 73 ~S~AI 77 (96)
T d1p3da1 73 VSSAI 77 (96)
T ss_dssp ECTTS
T ss_pred ECCCc
Confidence 88775
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0082 Score=42.43 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
.|+++|.|| |+||-.++..|.+.|.+|.++.|+..
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeeccc
Confidence 579999996 99999999999999999999999653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.69 E-value=0.0075 Score=42.45 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=31.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
.++++|.|| |+||-.++..|.+.|.+|.++.|++
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~~ 53 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRSI 53 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEech
Confidence 578999996 9999999999999999999998763
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.013 Score=43.36 Aligned_cols=98 Identities=20% Similarity=0.255 Sum_probs=55.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC-CCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.++|.|.|++|-.|+.+++.+.+. +.++.+. +|....... .......... ..++.-..++..+++.+|+||
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g--~d~~~~~~~~-----~~~~~~~~~~~~~~~~~DViI 76 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG--SDAGELAGAG-----KTGVTVQSSLDAVKDDFDVFI 76 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS--CCTTCSSSSS-----CCSCCEESCSTTTTTSCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhcc--chhhhhhccc-----cCCceeeccHHHHhcccceEE
Confidence 468999999999999999998886 6675443 443322110 0000000000 001111233445667899999
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
...- -.++...++.|.+. +++ + .++|+
T Consensus 77 DFs~-----------------p~~~~~~~~~a~~~-~~~-~-ViGTT 103 (162)
T d1diha1 77 DFTR-----------------PEGTLNHLAFCRQH-GKG-M-VIGTT 103 (162)
T ss_dssp ECSC-----------------HHHHHHHHHHHHHT-TCE-E-EECCC
T ss_pred Eecc-----------------HHHHHHHHHHHHhc-cce-e-EEecC
Confidence 7643 22345677888887 553 3 34453
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.67 E-value=0.0014 Score=50.65 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=34.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (328)
+.++|+|+|-| .|-+|++++++|.+.|.+|++.+.+...
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~ 62 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTER 62 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHH
Confidence 46789999998 7999999999999999999988776543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.65 E-value=0.0069 Score=42.62 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
.++++|.|| |++|-.++..|.+.|++|.++.|.+.
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccceEEEEecccc
Confidence 478999996 99999999999999999999988654
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.65 E-value=0.036 Score=36.27 Aligned_cols=71 Identities=18% Similarity=0.069 Sum_probs=45.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEEEc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVCHT 88 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 88 (328)
+|||.++|-.|-==+.|++.|.+.|+.|.+.++...+. ..++. . .++++..+. +++. ++++|.||..
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~--t~~L~-~----~Gi~i~~gh--~~~~----i~~~d~vV~S 67 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETER--TAYLR-K----LGIPIFVPH--SADN----WYDPDLVIKT 67 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHHH-H----TTCCEESSC--CTTS----CCCCSEEEEC
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChh--HHHHH-H----CCCeEEeee--cccc----cCCCCEEEEe
Confidence 36788887655444578999999999999999875432 22221 1 245554442 1222 3568999998
Q ss_pred cCCC
Q 020266 89 ASPF 92 (328)
Q Consensus 89 a~~~ 92 (328)
.|..
T Consensus 68 sAI~ 71 (89)
T d1j6ua1 68 PAVR 71 (89)
T ss_dssp TTCC
T ss_pred cCcC
Confidence 8763
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.64 E-value=0.0069 Score=42.12 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=31.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
.++++|.|| |++|-.++..|.+.|++|.++.|.+.
T Consensus 21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeecc
Confidence 689999996 99999999999999999999988643
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.64 E-value=0.01 Score=41.45 Aligned_cols=35 Identities=23% Similarity=0.093 Sum_probs=31.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
.++++|.|| |+||-.++..|.+.|.+|.++.|...
T Consensus 22 p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 22 PGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecc
Confidence 688999996 99999999999999999999998654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.60 E-value=0.029 Score=41.97 Aligned_cols=85 Identities=13% Similarity=-0.081 Sum_probs=55.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCC-----CCcEEEE-------EccC--CCcCc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGA-----SERLQLF-------KANL--LEEGS 74 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~-------~~Dl--~~~~~ 74 (328)
.-+|+|.|| |-.|.+-++-....|.+|.+++.+....+.+..+...... ....+.. .-+. .+.+.
T Consensus 29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~ 107 (183)
T d1l7da1 29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 107 (183)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence 458999996 9999999999999999999999999988887765421110 0000000 0000 11234
Q ss_pred hHHhhCCccEEEEccCCCCC
Q 020266 75 FDSIVDGCDGVCHTASPFYH 94 (328)
Q Consensus 75 ~~~~~~~~d~vih~a~~~~~ 94 (328)
+.+.+.++|+||-.+-....
T Consensus 108 l~~~l~~aDlVI~talipG~ 127 (183)
T d1l7da1 108 VLKELVKTDIAITTALIPGK 127 (183)
T ss_dssp HHHHHTTCSEEEECCCCTTS
T ss_pred HHHHHHhhhhheeeeecCCc
Confidence 55667789999988865443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.58 E-value=0.012 Score=43.72 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
.+.+|+|.|+ |.+|...+..+...|++|+++++++.+.+.
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~ 66 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLEL 66 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHh
Confidence 4788999986 999999998888889999999988766544
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.52 E-value=0.024 Score=42.55 Aligned_cols=74 Identities=9% Similarity=0.056 Sum_probs=49.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc-hHHh---h--C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSI---V--D 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~---~--~ 80 (328)
.+.+|+|+|+ |.+|...+..+...| .+|+++++++++.+.- +.+. ...+ .|..+.+. ...+ . .
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A-k~~G-------A~~~-in~~~~~~~~~~~~~~~~g~ 98 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA-MAVG-------ATEC-ISPKDSTKPISEVLSEMTGN 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHHT-------CSEE-ECGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHH-HhcC-------CcEE-ECccccchHHHHHHHHhccc
Confidence 4778999986 999999999999998 5799999998876542 2221 1111 12233222 2222 2 3
Q ss_pred CccEEEEccCC
Q 020266 81 GCDGVCHTASP 91 (328)
Q Consensus 81 ~~d~vih~a~~ 91 (328)
++|++|.+.+.
T Consensus 99 G~d~vi~~~g~ 109 (176)
T d1d1ta2 99 NVGYTFEVIGH 109 (176)
T ss_dssp CCCEEEECSCC
T ss_pred cceEEEEeCCc
Confidence 79999998874
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.51 E-value=0.011 Score=42.27 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=32.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
..++|+|.|| |++|-.++..|.+.|.+|.++.+.+.
T Consensus 34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence 3689999995 99999999999999999999998654
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.0084 Score=53.46 Aligned_cols=112 Identities=11% Similarity=0.040 Sum_probs=66.2
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhh-------------------hhccCCCCcEEEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHL-------------------LALDGASERLQLFK 66 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 66 (328)
+...+|+|.|+ |.+|..+++.|+..|. ++++++.+.-....+.+. +......-+++.+.
T Consensus 23 L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~ 101 (529)
T d1yova1 23 LESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE 101 (529)
T ss_dssp HHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEc
Confidence 34578999997 7799999999999994 688887655444443332 11111112344444
Q ss_pred ccCCCc-CchHHhhCCccEEEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecchhhhcc
Q 020266 67 ANLLEE-GSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN 138 (328)
Q Consensus 67 ~Dl~~~-~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~ 138 (328)
.+..+. +...+.+.++|+||.+.. |......+-+.|++. +. .+|+.+|. +.+|
T Consensus 102 ~~~~~~~~~~~~~~~~~dvVv~~~~----------------~~~~~~~l~~~c~~~-~i-p~i~~~~~-G~~G 155 (529)
T d1yova1 102 ESPENLLDNDPSFFCRFTVVVATQL----------------PESTSLRLADVLWNS-QI-PLLICRTY-GLVG 155 (529)
T ss_dssp SCHHHHHHSCGGGGGGCSEEEEESC----------------CHHHHHHHHHHHHHH-TC-CEEEEEEE-TTEE
T ss_pred CCchhhhhhHHHHhcCCCEEEECCC----------------CHHHHHHHHHHHHHc-CC-CEEEEecc-CCEE
Confidence 433221 111234567899986532 222334566777776 55 48888885 4555
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.29 E-value=0.022 Score=43.08 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=48.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
..+|++.|.| .|.||+.+++.|..-|.+|++.++...+...... .++ ..++.++++.+|+|+
T Consensus 42 l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~---------~~~--------~~~l~ell~~sDiv~ 103 (184)
T d1ygya1 42 IFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL---------GIE--------LLSLDDLLARADFIS 103 (184)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHH---------TCE--------ECCHHHHHHHCSEEE
T ss_pred ccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHHhhc---------Cce--------eccHHHHHhhCCEEE
Confidence 4578899999 6999999999998889999999887654332111 111 245778888899887
Q ss_pred EccCC
Q 020266 87 HTASP 91 (328)
Q Consensus 87 h~a~~ 91 (328)
-+...
T Consensus 104 ~~~Pl 108 (184)
T d1ygya1 104 VHLPK 108 (184)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 66544
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.24 E-value=0.095 Score=36.08 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=54.9
Q ss_pred CeEEEECCc---cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGAS---GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
|+|.|.|++ +-.|..+.+.|++.||+|+.+..+.+.- ..+.-+.++.++-+.+|.++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i--------------------~G~~~y~sl~~lp~~~D~vv 61 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI--------------------EGLKCYRSVRELPKDVDVIV 61 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE--------------------TTEECBSSGGGSCTTCCEEE
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc--------------------cCccccccchhccccceEEE
Confidence 689999988 7799999999999999987764332111 12233455666666788877
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEe
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~ 130 (328)
-+.. -..+..+++.|.+. +.+.++.-
T Consensus 62 i~vp-----------------~~~~~~~l~~~~~~-g~k~v~~~ 87 (116)
T d1y81a1 62 FVVP-----------------PKVGLQVAKEAVEA-GFKKLWFQ 87 (116)
T ss_dssp ECSC-----------------HHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EEeC-----------------HHHHHHHHHHHHhc-CCceEEec
Confidence 5432 22244566677776 77766543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.19 E-value=0.026 Score=42.24 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=48.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc-hHHhh-----C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIV-----D 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~-----~ 80 (328)
.+.+|+|.|+ |.+|...+..+...|. +|+++++++++.+...++ +...+ .|..+.+. +.+.. .
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l--------Ga~~~-i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL--------GATEC-LNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT--------TCSEE-ECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc--------CCcEE-EcCCCchhHHHHHHHHhcCC
Confidence 4778999996 9999999999988885 688888887665443222 11111 23332222 22222 2
Q ss_pred CccEEEEccCC
Q 020266 81 GCDGVCHTASP 91 (328)
Q Consensus 81 ~~d~vih~a~~ 91 (328)
++|++|.+++.
T Consensus 97 G~d~vid~~g~ 107 (174)
T d1p0fa2 97 GVDYAVECAGR 107 (174)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEEEEcCCC
Confidence 68999998864
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.021 Score=49.29 Aligned_cols=79 Identities=15% Similarity=0.072 Sum_probs=54.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhh-------------------hccCCCCcEEEEEc
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLL-------------------ALDGASERLQLFKA 67 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 67 (328)
+..||||.|+ |.||..+++.|+..|. ++.+++.+.-+...+.+++ ......-++..+..
T Consensus 36 ~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 114 (426)
T d1yovb1 36 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN 114 (426)
T ss_dssp HHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred hcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence 3568999997 6799999999999996 7888887655444443321 11112335666777
Q ss_pred cCCCcCchHHhhCCccEEEEcc
Q 020266 68 NLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 68 Dl~~~~~~~~~~~~~d~vih~a 89 (328)
++.+.. ...++++|+||.+.
T Consensus 115 ~i~~~~--~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 115 KIQDFN--DTFYRQFHIIVCGL 134 (426)
T ss_dssp CGGGBC--HHHHTTCSEEEECC
T ss_pred cccchH--HHHHHhcchheecc
Confidence 776543 46788999999764
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.14 E-value=0.01 Score=41.76 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (328)
.++++|.|| |+||-.++..|.+.|.+|.++.|++.-
T Consensus 25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 689999996 999999999999999999999986643
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.08 E-value=0.082 Score=37.75 Aligned_cols=87 Identities=23% Similarity=0.114 Sum_probs=57.5
Q ss_pred CCCeEEEECCc---cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 8 AGKVVCVTGAS---GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 8 ~~~~vlVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
+.|+|.|.|++ +-.|..+++.|.+.||+|+.+.-..... ....-+.++.++-..+|.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i--------------------~G~~~~~sl~dlp~~iD~ 77 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV--------------------LGRKCYPSVLDIPDKIEV 77 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE--------------------TTEECBSSGGGCSSCCSE
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc--------------------CCCcccccccccCccceE
Confidence 47899999998 7899999999999999987775432211 111223455555567888
Q ss_pred EEEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 85 VCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 85 vih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
|+-+.. ...+..+++.|.+. +++.+++.++
T Consensus 78 v~i~vp-----------------~~~~~~~~~e~~~~-g~k~v~~~~G 107 (139)
T d2d59a1 78 VDLFVK-----------------PKLTMEYVEQAIKK-GAKVVWFQYN 107 (139)
T ss_dssp EEECSC-----------------HHHHHHHHHHHHHH-TCSEEEECTT
T ss_pred EEEEeC-----------------HHHHHHHHHHHHHh-CCCEEEEecc
Confidence 765432 22345667777776 7776665443
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=95.07 E-value=0.02 Score=44.86 Aligned_cols=71 Identities=20% Similarity=0.165 Sum_probs=48.4
Q ss_pred ccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-Ccc
Q 020266 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-GCD 83 (328)
Q Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d 83 (328)
.++++++|+|-| -|-+|+++++.|.+.|..|++.+.+......+.... +.+. .+++ +++. .||
T Consensus 35 ~~l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~-------g~~~-----~~~~---~~~~~~cD 98 (230)
T d1leha1 35 DSLEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE-------GADA-----VAPN---AIYGVTCD 98 (230)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-------CCEE-----CCGG---GTTTCCCS
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhc-------CCcc-----cCCc---cccccccc
Confidence 346799999999 599999999999999999998876654433322211 1111 1222 2333 689
Q ss_pred EEEEccCC
Q 020266 84 GVCHTASP 91 (328)
Q Consensus 84 ~vih~a~~ 91 (328)
+++=||-.
T Consensus 99 Il~PcA~~ 106 (230)
T d1leha1 99 IFAPCALG 106 (230)
T ss_dssp EEEECSCS
T ss_pred Eecccccc
Confidence 99999853
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.03 E-value=0.014 Score=48.32 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=32.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
++|+|+|+|| |+-|-..|..|.+.|++|.++-++..
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 4789999995 99999999999999999999988654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.93 E-value=0.021 Score=39.75 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=32.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
.+++|+|.|| |++|-.++..|.+.|.+|.++.|.+.
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence 3689999995 99999999999999999999998654
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.92 E-value=0.044 Score=40.81 Aligned_cols=114 Identities=18% Similarity=0.065 Sum_probs=65.6
Q ss_pred CeEEEECCccHHHHH--HHHHHHHC----CCeEEEEecCCCChhhhhhhh----hccCCCCcEEEEEccCCCcCchHHhh
Q 020266 10 KVVCVTGASGYIASW--LVKLLLSR----GYTVKASVRDPNDPKKTRHLL----ALDGASERLQLFKANLLEEGSFDSIV 79 (328)
Q Consensus 10 ~~vlVtGatG~iG~~--l~~~L~~~----g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (328)
|||.|.|| |.+|.. ++..|+.. +.++..+++++++.+...... .... ...++ ....+.++++
T Consensus 3 mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~--~~~~i-----~~~td~~eaL 74 (171)
T d1obba1 3 VKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG--ADLKF-----EKTMNLDDVI 74 (171)
T ss_dssp CEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTT--CCCEE-----EEESCHHHHH
T ss_pred cEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcC--CCeEE-----EEeCChhhcc
Confidence 57999996 888865 34445543 469999999877655422221 1111 12222 1224577888
Q ss_pred CCccEEEEccCCCCCC------------------C--------CCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 80 DGCDGVCHTASPFYHD------------------A--------KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 80 ~~~d~vih~a~~~~~~------------------~--------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
+++|+||..++..... . .... ....-|+.-.+.+++..++......+|.+|=
T Consensus 75 ~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~-~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TN 152 (171)
T d1obba1 75 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYT-FSNYNQLKYFVDIARKIEKLSPKAWYLQAAN 152 (171)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCS-SSCHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred cCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcce-eeecchHHHHHHHHHHHHHHCcCeEEEEECC
Confidence 9999999987642110 0 0000 0122488888888888887733334554443
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.86 E-value=0.017 Score=40.73 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=31.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
.++++|.|| |+||-.++..|.+.|.+|.++.+.+.
T Consensus 26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 689999996 99999999999999999999988653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.70 E-value=0.023 Score=42.40 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=45.6
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----G 81 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~ 81 (328)
.+.+|+|.|+ |.+|...+..+...|. .|++.++++++.+...+. + ....+.. . .+.++...+ +
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----g---a~~~i~~--~-~~~~~~~~~~~~~~g 100 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----G---ADHVVDA--R-RDPVKQVMELTRGRG 100 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----T---CSEEEET--T-SCHHHHHHHHTTTCC
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----c---cceeecC--c-ccHHHHHHHhhCCCC
Confidence 3678999986 9999999988877775 567777776554443322 1 1123322 2 233333332 5
Q ss_pred ccEEEEccCC
Q 020266 82 CDGVCHTASP 91 (328)
Q Consensus 82 ~d~vih~a~~ 91 (328)
+|+||.+++.
T Consensus 101 ~d~vid~~g~ 110 (172)
T d1h2ba2 101 VNVAMDFVGS 110 (172)
T ss_dssp EEEEEESSCC
T ss_pred ceEEEEecCc
Confidence 8999999874
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.70 E-value=0.016 Score=46.68 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=29.1
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
|+|+|| |..|..++.+|+++|++|+++.+..
T Consensus 7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 999996 9999999999999999999999864
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.043 Score=38.34 Aligned_cols=73 Identities=21% Similarity=0.170 Sum_probs=51.1
Q ss_pred CCeEEEECC----------ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 9 GKVVCVTGA----------SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 9 ~~~vlVtGa----------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
-|+|+|.|+ --+-+.+.+++|.+.|++++.+..+++.--.-. .-..-+..+-...+++.++
T Consensus 7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~---------d~aD~lYfePlt~e~v~~I 77 (127)
T d1a9xa3 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDP---------EMADATYIEPIHWEVVRKI 77 (127)
T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCG---------GGSSEEECSCCCHHHHHHH
T ss_pred CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcCh---------hhcceeeeecCCHHHHHHH
Confidence 578999998 457899999999999999999888876532200 0112233444555777777
Q ss_pred hC--CccEEEEccC
Q 020266 79 VD--GCDGVCHTAS 90 (328)
Q Consensus 79 ~~--~~d~vih~a~ 90 (328)
++ ++|.|+-..|
T Consensus 78 i~~E~pd~il~~~G 91 (127)
T d1a9xa3 78 IEKERPDAVLPTMG 91 (127)
T ss_dssp HHHHCCSEEECSSS
T ss_pred HHHhCcCCeEEEee
Confidence 76 7999885543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.61 E-value=0.01 Score=45.50 Aligned_cols=36 Identities=31% Similarity=0.284 Sum_probs=29.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK 47 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 47 (328)
|||.|.| .|++|..++..| +.|++|++++.++...+
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~~v~ 36 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPSKVD 36 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHHHHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHHHHH
Confidence 5799997 799999999766 57999999998765433
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.02 Score=41.64 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=28.5
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC--CeEEEEec
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG--YTVKASVR 41 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r 41 (328)
||+|.|.|+||-||.....-+.+.. ++|.++.-
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa 35 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA 35 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 6899999999999999999888863 78888764
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.027 Score=42.34 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=32.7
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
+.|+|+|+|| |.-|-..+..|.++||+|.++.+.+.
T Consensus 42 ~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 42 QKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCc
Confidence 4789999996 99999999999999999999998654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.47 E-value=0.027 Score=44.74 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=32.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
..+||+|+|| |..|..++..|.++|++|.++.|++.
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3578999996 99999999999999999999998654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.45 E-value=0.022 Score=43.11 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=31.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPND 45 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~ 45 (328)
+|||+|+|| |..|-..+.+|.+.|+ +|.++.|++.-
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQEYV 40 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 689999996 9999999999999998 59999886543
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=94.38 E-value=0.053 Score=40.15 Aligned_cols=76 Identities=11% Similarity=0.029 Sum_probs=45.2
Q ss_pred CCCeEEEECCccHHHHH-HHHHHHHC-----CCeEEEEecCCCChhhhhhhh----hccCCCCcEEEEEccCCCcCchHH
Q 020266 8 AGKVVCVTGASGYIASW-LVKLLLSR-----GYTVKASVRDPNDPKKTRHLL----ALDGASERLQLFKANLLEEGSFDS 77 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~-l~~~L~~~-----g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~ 77 (328)
+..||.|.||.+ +|.. ++..|+.+ +.++..++.++++.+...... .......+++.. .+..+
T Consensus 2 k~~KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~e 73 (167)
T d1u8xx1 2 KSFSIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-------TDPEE 73 (167)
T ss_dssp CCEEEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-------SCHHH
T ss_pred CCceEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-------CChhh
Confidence 345799999844 4543 44455542 247888998877655322221 121211122221 35677
Q ss_pred hhCCccEEEEccCC
Q 020266 78 IVDGCDGVCHTASP 91 (328)
Q Consensus 78 ~~~~~d~vih~a~~ 91 (328)
.++++|+||..|+.
T Consensus 74 al~~AD~Vvitag~ 87 (167)
T d1u8xx1 74 AFTDVDFVMAHIRV 87 (167)
T ss_dssp HHSSCSEEEECCCT
T ss_pred ccCCCCEEEECCCc
Confidence 88999999999986
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=94.38 E-value=0.072 Score=38.89 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=53.6
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
++.+|+++|.| =|.+|+.+++.|...|.+|+++..+|-+ .++.. ..+++. ..++++++..|++
T Consensus 20 ~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~--alqA~------mdGf~v--------~~~~~a~~~aDi~ 82 (163)
T d1v8ba1 20 LISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPIC--AIQAV------MEGFNV--------VTLDEIVDKGDFF 82 (163)
T ss_dssp CCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHH--HHHHH------TTTCEE--------CCHHHHTTTCSEE
T ss_pred eecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchh--hHHHH------hcCCcc--------CchhHccccCcEE
Confidence 34689999999 5999999999999999999999988733 33332 123333 4567888889999
Q ss_pred EEccCCC
Q 020266 86 CHTASPF 92 (328)
Q Consensus 86 ih~a~~~ 92 (328)
|-+.|..
T Consensus 83 vTaTGn~ 89 (163)
T d1v8ba1 83 ITCTGNV 89 (163)
T ss_dssp EECCSSS
T ss_pred EEcCCCC
Confidence 9888753
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.31 E-value=0.015 Score=43.26 Aligned_cols=82 Identities=18% Similarity=0.041 Sum_probs=50.8
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccC--CCcCchHHhhCCcc
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL--LEEGSFDSIVDGCD 83 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~~~~~~~~~~d 83 (328)
..++|+|+|.|.+.-+|+.++..|+++|..|................. .. ......|+ ...+.+.+....+|
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~lk~~~~~aD 99 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESL--KL----NKHHVEDLGEYSEDLLKKCSLDSD 99 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCS--SC----CCCEEEEEEECCHHHHHHHHHHCS
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccce--ee----eeeccccccccchhHHhhccccCC
Confidence 456899999999999999999999999999987654321110000000 00 00011122 12234666666799
Q ss_pred EEEEccCCCC
Q 020266 84 GVCHTASPFY 93 (328)
Q Consensus 84 ~vih~a~~~~ 93 (328)
+||..+|...
T Consensus 100 IvIsavG~p~ 109 (171)
T d1edza1 100 VVITGVPSEN 109 (171)
T ss_dssp EEEECCCCTT
T ss_pred EEEEccCCCc
Confidence 9998887643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.26 E-value=0.024 Score=41.91 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
.+.+|+|.|+ |-+|...+..+...|++|+++++++++...
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~ 66 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLEL 66 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhh
Confidence 4678999975 889999998888899999999988766544
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=94.04 E-value=0.029 Score=40.76 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=29.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC--CCeEEEEecC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR--GYTVKASVRD 42 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~ 42 (328)
+|+|.|.|+||-||....+-+.+. .++|.++.-.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~ 37 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN 37 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC
Confidence 689999999999999999988775 4788887643
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.92 E-value=0.028 Score=42.15 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=45.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhc-c--CCCCcEE-EEEccCCCcCchHHhhCCcc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLAL-D--GASERLQ-LFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~-~~~~Dl~~~~~~~~~~~~~d 83 (328)
|-||.|.| .|-||+.++|.|.+++ .+|.++....+.......+..- . ....... +-...+.-...+..+..++|
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vD 79 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSD 79 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCC
Confidence 45899999 7999999999999874 6777765432222211111100 0 0000000 00011222234556666899
Q ss_pred EEEEccCC
Q 020266 84 GVCHTASP 91 (328)
Q Consensus 84 ~vih~a~~ 91 (328)
+|+-|.|.
T Consensus 80 iViecTG~ 87 (178)
T d1b7go1 80 IVVDTTPN 87 (178)
T ss_dssp EEEECCST
T ss_pred EEEECCCC
Confidence 99999885
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=93.78 E-value=0.037 Score=41.02 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=29.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCC--eEEEEecCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGY--TVKASVRDP 43 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~ 43 (328)
+|||+|+|| |++|-.++.+|.+.++ +|+++.+.+
T Consensus 2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 789999996 9999999999999874 677777654
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.44 E-value=0.2 Score=35.42 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=45.1
Q ss_pred eEEEECCccHHHHHHHHHHHHC-CCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-----Ccc
Q 020266 11 VVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-----GCD 83 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d 83 (328)
||.|.|++|-.|+.+++.+.+. ++++.+. ++... ...+.. .+.. +..|++.|+...+.++ ++-
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~-~~~~~~--------~~~D-vvIDFS~p~~~~~~~~~~~~~~~~ 70 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP-LSLLTD--------GNTE-VVIDFTHPDVVMGNLEFLIDNGIH 70 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC-THHHHT--------TTCS-EEEECCCTTTHHHHHHHHHHTTCE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc-hhhhcc--------ccCC-EEEEcccHHHHHHHHHHHHhcCCC
Confidence 6999999999999999998775 6776554 44322 111100 0111 4568999987766654 566
Q ss_pred EEEEccC
Q 020266 84 GVCHTAS 90 (328)
Q Consensus 84 ~vih~a~ 90 (328)
.|+=..|
T Consensus 71 ~ViGTTG 77 (135)
T d1yl7a1 71 AVVGTTG 77 (135)
T ss_dssp EEECCCC
T ss_pred EEEeccc
Confidence 7765444
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.37 E-value=0.048 Score=40.68 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=29.3
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
++++|+|.|| |++|-.++..|.+.|.+|.++.+.+
T Consensus 2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence 3678999996 9999999999999998877665543
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.14 Score=35.18 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=47.9
Q ss_pred CCeEEEECCc----------cHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHh
Q 020266 9 GKVVCVTGAS----------GYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSI 78 (328)
Q Consensus 9 ~~~vlVtGat----------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (328)
.|+|||.|+. -+-+.+.++.|.+.|++++.+..+++.--.- ..-..-+..+-...+.+.++
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd---------~d~aD~lYfeplt~e~v~~I 74 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTD---------YDTSDRLYFEPVTLEDVLEI 74 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTS---------TTSSSEEECCCCSHHHHHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcC---------hhhcCceEEccCCHHHHHHH
Confidence 5789999983 3789999999999999999988877653210 01111222333445566666
Q ss_pred hC--CccEEEEcc
Q 020266 79 VD--GCDGVCHTA 89 (328)
Q Consensus 79 ~~--~~d~vih~a 89 (328)
++ ++|.|+-.-
T Consensus 75 i~~E~p~~ii~~~ 87 (121)
T d1a9xa4 75 VRIEKPKGVIVQY 87 (121)
T ss_dssp HHHHCCSEEECSS
T ss_pred HHHhCCCEEEeeh
Confidence 65 788887543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.18 E-value=0.048 Score=44.08 Aligned_cols=34 Identities=26% Similarity=0.176 Sum_probs=30.7
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
.|||+|+|| |.-|-..+.+|.+.|++|.++.+++
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 478999995 9999999999999999999998754
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.14 E-value=0.15 Score=37.68 Aligned_cols=74 Identities=19% Similarity=0.191 Sum_probs=45.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc-hHHhh-----C
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIV-----D 80 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~-----~ 80 (328)
.+.+|+|.|+ |.+|...+..+...| .+|+++++++++.+...++ +...+ .|..+.++ ..+.. .
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~--------GAd~~-in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF--------GATDF-VNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------TCCEE-ECGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHHc--------CCcEE-EcCCCcchhHHHHHHhhccC
Confidence 4678999997 557777777777776 5788888887765442222 12111 13322222 22222 2
Q ss_pred CccEEEEccCC
Q 020266 81 GCDGVCHTASP 91 (328)
Q Consensus 81 ~~d~vih~a~~ 91 (328)
++|+++.+.|.
T Consensus 98 G~d~vid~~G~ 108 (175)
T d1cdoa2 98 GVDFSLECVGN 108 (175)
T ss_dssp CBSEEEECSCC
T ss_pred CcceeeeecCC
Confidence 69999999874
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.81 E-value=0.081 Score=41.32 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=33.0
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (328)
..++|+|+|| |..|-..+.+|.++|++|.++.++..-
T Consensus 48 ~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 48 NKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecccc
Confidence 4789999996 999999999999999999999876543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.81 E-value=0.042 Score=44.39 Aligned_cols=32 Identities=28% Similarity=0.252 Sum_probs=29.7
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
+|+|.|| |-.|..++..|.+.|++|.++.|.+
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 6999997 8999999999999999999998865
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=92.74 E-value=0.016 Score=42.24 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=27.8
Q ss_pred EEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhh
Q 020266 13 CVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLL 53 (328)
Q Consensus 13 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~ 53 (328)
-++| +|.+|+++++.|.+.++.+.+..|++++.+.+....
T Consensus 3 gfIG-~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~ 42 (153)
T d2i76a2 3 NFVG-TGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVY 42 (153)
T ss_dssp EEES-CCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHT
T ss_pred EEEe-CcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcc
Confidence 3566 799999999988664444567889888877766654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.65 E-value=0.076 Score=38.59 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=29.8
Q ss_pred CCeEEEE-CCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 9 GKVVCVT-GASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVt-GatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
.++++|. .+.||+|-.+++.|.+.|++|.++.+.+.
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 4556665 34699999999999999999999998754
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=92.64 E-value=0.054 Score=43.61 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=30.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
|+|+|+|| |.-|-..+.+|.++|++|.++-+++.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSAR 34 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56999997 99999999999999999999987643
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=92.60 E-value=0.064 Score=43.93 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=31.8
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
+.|+|+|+|| |.-|-..+.+|.++|++|.++.+.+
T Consensus 29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999995 9999999999999999999998764
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.21 Score=40.32 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=24.8
Q ss_pred CccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 17 ASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 17 atG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
.||-.|.+|+++|+.+|++|+.+.+..+
T Consensus 44 SSGk~G~alA~~~~~~Ga~V~li~g~~s 71 (290)
T d1p9oa_ 44 SSGRRGATSAEAFLAAGYGVLFLYRARS 71 (290)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred CchHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 4799999999999999999999987543
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=92.35 E-value=0.079 Score=43.85 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=30.9
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEecCCC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRG--YTVKASVRDPN 44 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~ 44 (328)
.+|+|+|+|| |.-|-..+.+|+++| ++|+++-|+..
T Consensus 3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 4789999996 999999999999876 69999988753
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.20 E-value=0.054 Score=44.24 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=31.0
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
|..|+|+|| |+-|..+++.|++.|++|.++.++..
T Consensus 1 M~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 1 MYDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp CEEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred CccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 457999995 99999999999999999999987654
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.96 E-value=0.055 Score=40.18 Aligned_cols=117 Identities=10% Similarity=-0.007 Sum_probs=60.4
Q ss_pred CeEEEECC-ccHHHHHHHHHHHHCC----CeEEEEecCCCC--hhhhhhhhhc--cCCCCcEEEEEccCCCcCchHHhhC
Q 020266 10 KVVCVTGA-SGYIASWLVKLLLSRG----YTVKASVRDPND--PKKTRHLLAL--DGASERLQLFKANLLEEGSFDSIVD 80 (328)
Q Consensus 10 ~~vlVtGa-tG~iG~~l~~~L~~~g----~~V~~~~r~~~~--~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (328)
+||.|+|| +.+.+..++..+.... -++..++.++.. .+.+...... .......... ...+..+.++
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~td~~~al~ 76 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIH-----LTLDRRRALD 76 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEE-----EESCHHHHHT
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceee-----ecCCchhhcC
Confidence 57999996 3455555555554432 378888877643 2222221110 0011122221 1234567788
Q ss_pred CccEEEEccCCCCCCCCCcc-------------------hhhhhHHHHHHHHHHHHHhcCCCccEEEEec
Q 020266 81 GCDGVCHTASPFYHDAKDPQ-------------------VELLDPAVKGTLNVLNSCAKFPSIKRVVLTS 131 (328)
Q Consensus 81 ~~d~vih~a~~~~~~~~~~~-------------------~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~S 131 (328)
++|+||.+|+.......... .....-|+.-.+.+++...+.....-++.+|
T Consensus 77 gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 77 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 99999999985321100000 0112347777788888887773333444444
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.1 Score=40.55 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=29.2
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
|+|+| +|.-|-..+.+|+++|++|.++.+...
T Consensus 8 viViG-aG~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 89999 599999999999999999999988653
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=91.86 E-value=0.12 Score=35.42 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=29.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHH---CCCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLS---RGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~ 44 (328)
.++++|.|| |++|-.++..|.+ .|.+|.++.|.+.
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccccccceeccccc
Confidence 689999996 9999999987665 3889999988654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=91.32 E-value=0.11 Score=41.64 Aligned_cols=31 Identities=23% Similarity=0.069 Sum_probs=28.6
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
|+|+|| |..|..++.+|+++|++|.++.+..
T Consensus 6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 899995 9999999999999999999999854
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=91.32 E-value=0.12 Score=40.80 Aligned_cols=81 Identities=14% Similarity=0.065 Sum_probs=50.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEecCCCChhhhhhhh-------------------hccCCCCcEEEEE
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTRHLL-------------------ALDGASERLQLFK 66 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 66 (328)
.+.++|+|.| .|.+|++++..|+..|. ++++++.+.-+...+.+++ .......+++.+.
T Consensus 28 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~ 106 (247)
T d1jw9b_ 28 LKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 106 (247)
T ss_dssp HHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhh
Confidence 3467999999 58899999999999995 6788876655544443321 1111122333333
Q ss_pred ccCCCcCchHHhhCCccEEEEcc
Q 020266 67 ANLLEEGSFDSIVDGCDGVCHTA 89 (328)
Q Consensus 67 ~Dl~~~~~~~~~~~~~d~vih~a 89 (328)
..+. .......+...|+||.+.
T Consensus 107 ~~~~-~~~~~~~~~~~divid~~ 128 (247)
T d1jw9b_ 107 ALLD-DAELAALIAEHDLVLDCT 128 (247)
T ss_dssp SCCC-HHHHHHHHHTSSEEEECC
T ss_pred hhhh-hccccccccccceeeecc
Confidence 3333 234555666788888654
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.17 E-value=0.62 Score=34.24 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=46.2
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEe-cCCCChhhhhhhhhccCCCCcEEEEEcc-----------CCCcCch
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASV-RDPNDPKKTRHLLALDGASERLQLFKAN-----------LLEEGSF 75 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~D-----------l~~~~~~ 75 (328)
.+||.|-| .|-||+.+++.|.+++ .+|.++. .++.......... .+..+..+ +.....+
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKEL-------GIPVYAASEEFIPRFEKEGFEVAGTL 73 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHT-------TCCEEESSGGGHHHHHHHTCCCSCBH
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhc-------CceeecccccceeeecccCccccchh
Confidence 46899999 5999999999998864 6666554 3332222111111 11111111 2223356
Q ss_pred HHhhCCccEEEEccCCC
Q 020266 76 DSIVDGCDGVCHTASPF 92 (328)
Q Consensus 76 ~~~~~~~d~vih~a~~~ 92 (328)
..+.+++|+|+-|.|.+
T Consensus 74 ~~~~~~vDvViEcTG~f 90 (172)
T d2czca2 74 NDLLEKVDIIVDATPGG 90 (172)
T ss_dssp HHHHTTCSEEEECCSTT
T ss_pred hhhhccCCEEEECCCCC
Confidence 66677899999999863
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=91.08 E-value=0.11 Score=42.18 Aligned_cols=32 Identities=25% Similarity=0.548 Sum_probs=28.7
Q ss_pred eEEEECCccHHHHHHHHHHHHCCC-eEEEEecCC
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP 43 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 43 (328)
+|+|+|| |.+|..++.+|+++|. +|.++.|+.
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 5999996 9999999999999995 799998864
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.83 E-value=0.13 Score=38.80 Aligned_cols=33 Identities=18% Similarity=0.017 Sum_probs=27.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHC--CCeEEEEecCC
Q 020266 10 KVVCVTGASGYIASWLVKLLLSR--GYTVKASVRDP 43 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 43 (328)
|||+|.|| |++|-.++..|.+. +.+|+++.|..
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 57999996 89999999999886 46788888754
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.65 E-value=0.022 Score=44.63 Aligned_cols=27 Identities=30% Similarity=0.175 Sum_probs=24.0
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVK 37 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~ 37 (328)
|||+|+|| |.+|-..+.+|+++|++|.
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCce
Confidence 57999996 9999999999999997653
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=90.63 E-value=0.5 Score=34.73 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=45.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEc-----------cCCCcCch
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-YTVKASVR-DPNDPKKTRHLLALDGASERLQLFKA-----------NLLEEGSF 75 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------Dl~~~~~~ 75 (328)
|++|.|-| -|-||+.+++.|.+++ .+|.++.- ++........... ...... .+.-....
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~v~g~~ 72 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKG-------YDLYVAIPERVKLFEKAGIEVAGTV 72 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTT-------CCEEESSGGGHHHHHHTTCCCCEEH
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcC-------CceEecccccceeecccCcccCCCh
Confidence 67899998 6999999999998876 56665543 3322211111111 111111 11111245
Q ss_pred HHhhCCccEEEEccCCC
Q 020266 76 DSIVDGCDGVCHTASPF 92 (328)
Q Consensus 76 ~~~~~~~d~vih~a~~~ 92 (328)
..+++++|+|+-|.|.+
T Consensus 73 ~~~~~~vDvViEcTG~f 89 (171)
T d1cf2o1 73 DDMLDEADIVIDCTPEG 89 (171)
T ss_dssp HHHHHTCSEEEECCSTT
T ss_pred hHhhcCCCEEEEccCCC
Confidence 55667899999999863
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.55 E-value=0.17 Score=41.37 Aligned_cols=34 Identities=21% Similarity=0.119 Sum_probs=30.2
Q ss_pred CCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecC
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (328)
+.+||+|+|| |.-|-.-+.+|.++|++|.++-.+
T Consensus 4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~ 37 (449)
T d2dw4a2 4 KTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEAR 37 (449)
T ss_dssp CCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4668999996 999999999999999999998654
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=90.27 E-value=0.19 Score=39.45 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=31.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR 41 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r 41 (328)
+.++++|+|-| -|-+|+++++.|.+.|.+|++++-
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence 45789999998 699999999999999999988764
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.05 E-value=0.22 Score=39.41 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=29.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHCC-CeEEEEecCCC
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRG-YTVKASVRDPN 44 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~ 44 (328)
++|+|+|| |.-|..++..|.+.| ++|.++-|++.
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 57999996 999999999999999 58999988654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.91 E-value=0.24 Score=39.87 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=31.1
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR 41 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r 41 (328)
.+++++|+|-|- |-+|+++++.|.+.|..|++++-
T Consensus 33 ~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 33 GFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp SSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence 457899999995 99999999999999999988764
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.86 E-value=0.19 Score=34.42 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=28.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC---CCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR---GYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~ 44 (328)
.++++|.|| |++|-.++..|.+. |.+|.++.|.+.
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 579999997 99999999776654 568999988543
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.83 E-value=0.25 Score=36.76 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=57.9
Q ss_pred CeEEEECCccHHHHHHHHHHHHC-CCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--CccEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCDGV 85 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 85 (328)
.||.|+| +|.+|+..++.|... +.+|.++ ++++++...+....+. .....+ .++++++++ ++|+|
T Consensus 2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~ll~~~~iD~v 70 (184)
T d1ydwa1 2 IRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNY---PESTKI-------HGSYESLLEDPEIDAL 70 (184)
T ss_dssp EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC---CTTCEE-------ESSHHHHHHCTTCCEE
T ss_pred eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccc---ccceee-------cCcHHHhhhcccccee
Confidence 4799999 589999999999886 5787765 5665544443333221 112222 245666664 58988
Q ss_pred EEccCCCC----------CCCCCcchhhhhHHHHHHHHHHHHHhcC
Q 020266 86 CHTASPFY----------HDAKDPQVELLDPAVKGTLNVLNSCAKF 121 (328)
Q Consensus 86 ih~a~~~~----------~~~~~~~~~~~~~N~~~~~~l~~~~~~~ 121 (328)
+-+..... ....--.+.-+..|..-...|++.+++.
T Consensus 71 ~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~ 116 (184)
T d1ydwa1 71 YVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEAN 116 (184)
T ss_dssp EECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTT
T ss_pred eecccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhh
Confidence 86553200 0000001112234677778888888776
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=89.77 E-value=0.09 Score=39.18 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=25.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEec
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVR 41 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r 41 (328)
.+|+|.|| |++|-.++..|.+.|.+|.++.+
T Consensus 4 a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~ 34 (183)
T d1d7ya1 4 APVVVLGA-GLASVSFVAELRQAGYQGLITVV 34 (183)
T ss_dssp SSEEEECC-SHHHHHHHHHHHHHTCCSCEEEE
T ss_pred CCEEEECc-cHHHHHHHHHHHhcCCceEEEEE
Confidence 45999995 99999999999999977655544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=89.70 E-value=0.99 Score=36.72 Aligned_cols=81 Identities=17% Similarity=0.127 Sum_probs=51.0
Q ss_pred CCCCeEE-EECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc-hHHhhCCccE
Q 020266 7 AAGKVVC-VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIVDGCDG 84 (328)
Q Consensus 7 ~~~~~vl-VtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~ 84 (328)
.++++|| +.-+||..+-+++ ..+.+|++++.++...+.........+ -.+++++.+|..+... +...-+.+|.
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a----~g~~~V~~vD~s~~al~~a~~n~~~ng-l~~~~~i~~d~~~~~~~~~~~~~~fD~ 218 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLA----LGFREVVAVDSSAEALRRAEENARLNG-LGNVRVLEANAFDLLRRLEKEGERFDL 218 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHH----HHEEEEEEEESCHHHHHHHHHHHHHTT-CTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeeeccCCCCcHHHHHHH----hcCCcEEeecchHHHHHHHHHHHHHcC-CCCcceeeccHHHHhhhhHhhhcCCCE
Confidence 3567787 5556777665543 346799999999876655444433332 2468999999865321 2222246899
Q ss_pred EEEccCCC
Q 020266 85 VCHTASPF 92 (328)
Q Consensus 85 vih~a~~~ 92 (328)
||.....+
T Consensus 219 Vi~DpP~~ 226 (318)
T d1wxxa2 219 VVLDPPAF 226 (318)
T ss_dssp EEECCCCS
T ss_pred EEEcCCcc
Confidence 99876543
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.62 E-value=0.2 Score=35.46 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCeEEEECCccHHHHHHHHHHHH----CCCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLS----RGYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~----~g~~V~~~~r~~~ 44 (328)
.++++|.|| ||+|-.++..|.+ .|.+|..+.+.+.
T Consensus 37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 578999996 9999999988853 5899999887543
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=89.15 E-value=0.68 Score=33.50 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=41.7
Q ss_pred CeEEEECCccHHHHH-HHHHHHHC-CCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 10 KVVCVTGASGYIASW-LVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~-l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
++|.|+| +|.+|+. .+..|... +.+++++ +++++........++ + + -.+++.++.+++|+|+
T Consensus 2 iri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-------~-----~--~~~~~~~l~~~~D~V~ 66 (164)
T d1tlta1 2 LRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-------I-----P--YADSLSSLAASCDAVF 66 (164)
T ss_dssp EEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-------C-----C--BCSSHHHHHTTCSEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-------c-----c--ccccchhhhhhccccc
Confidence 4799999 5999975 56666654 6777665 466666555443321 1 1 1345666678899988
Q ss_pred Ecc
Q 020266 87 HTA 89 (328)
Q Consensus 87 h~a 89 (328)
-+.
T Consensus 67 I~t 69 (164)
T d1tlta1 67 VHS 69 (164)
T ss_dssp ECS
T ss_pred ccc
Confidence 654
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=89.09 E-value=0.2 Score=39.58 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=31.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEec
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR 41 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r 41 (328)
++++++|+|-| .|-+|++++++|.+.|..|+++.-
T Consensus 33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 33 TLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp CSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence 45789999999 699999999999999999988753
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.76 E-value=0.23 Score=36.03 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=26.3
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
||+|.|| |++|-.++..|. ++.+|.++.|.+
T Consensus 2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence 7999996 999999999885 578999998743
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.45 E-value=0.21 Score=38.05 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=43.2
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChh------hhhhhhhccCCCCcEEEEE-ccCCCcCchHHhhC-C
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPK------KTRHLLALDGASERLQLFK-ANLLEEGSFDSIVD-G 81 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~~~~~~~~~-~Dl~~~~~~~~~~~-~ 81 (328)
|||+|.|. +-.|..+++.|++.|++|.++.-.+++.. .+..... ..++.++. .++.+++.++.+-+ +
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~----~~~i~~~~~~~~~~~~~~~~i~~~~ 75 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAA----ERGIPVYAPDNVNHPLWVERIAQLS 75 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHH----HHTCCEECCSCCCSHHHHHHHHHTC
T ss_pred CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHH----HcCCcceecccccchhhhhhhhhhc
Confidence 56888865 55799999999999999977653222211 0111110 11344443 45555544443332 6
Q ss_pred ccEEEEccC
Q 020266 82 CDGVCHTAS 90 (328)
Q Consensus 82 ~d~vih~a~ 90 (328)
+|++|-...
T Consensus 76 ~Dlii~~g~ 84 (203)
T d2blna2 76 PDVIFSFYY 84 (203)
T ss_dssp CSEEEEESC
T ss_pred ccceeeeec
Confidence 898887653
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=88.44 E-value=0.47 Score=34.51 Aligned_cols=75 Identities=17% Similarity=0.091 Sum_probs=43.6
Q ss_pred CeEEEECCccHHHHHHHHH-HHH-C----CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCcc
Q 020266 10 KVVCVTGASGYIASWLVKL-LLS-R----GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCD 83 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~-L~~-~----g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 83 (328)
|||.|.|| |-+|...+-. |+. . +.++..++.++++.+........... ....... + .+..+.++++|
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~-~~~~~~~---t--~~~~~~l~~aD 73 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVK-DRFKVLI---S--DTFEGAVVDAK 73 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHT-TSSEEEE---C--SSHHHHHTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhc-cCceEEE---e--cCcccccCCCC
Confidence 57999998 5466555533 322 1 35899999887765543322211111 1222221 1 23566788999
Q ss_pred EEEEccCC
Q 020266 84 GVCHTASP 91 (328)
Q Consensus 84 ~vih~a~~ 91 (328)
+||..|+.
T Consensus 74 vVVita~~ 81 (162)
T d1up7a1 74 YVIFQFRP 81 (162)
T ss_dssp EEEECCCT
T ss_pred EEEEeccc
Confidence 99999985
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=87.69 E-value=0.33 Score=35.99 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=40.6
Q ss_pred CCCCeEEEECCccHHHHH-HHHHHHHCC--CeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--
Q 020266 7 AAGKVVCVTGASGYIASW-LVKLLLSRG--YTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-- 80 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~-l~~~L~~~g--~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 80 (328)
|+..+|.|.| +|.+|+. .+..|.+.+ .+|.++ ++++++...+...++ ...+ ..+++++++
T Consensus 1 MkkirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~-------~~~~------~~~~~ell~~~ 66 (181)
T d1zh8a1 1 LRKIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG-------NPAV------FDSYEELLESG 66 (181)
T ss_dssp CCCEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS-------SCEE------ESCHHHHHHSS
T ss_pred CCCcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccc-------ccce------eeeeecccccc
Confidence 4456899999 5999986 467776643 466655 455544444333321 1111 245666665
Q ss_pred CccEEEEcc
Q 020266 81 GCDGVCHTA 89 (328)
Q Consensus 81 ~~d~vih~a 89 (328)
++|+|+-+.
T Consensus 67 ~id~v~I~t 75 (181)
T d1zh8a1 67 LVDAVDLTL 75 (181)
T ss_dssp CCSEEEECC
T ss_pred ccceeeccc
Confidence 589888654
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=87.58 E-value=0.27 Score=32.98 Aligned_cols=37 Identities=22% Similarity=0.033 Sum_probs=30.3
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
.+++|+|+|.|+ |.-|.-++..|+..+.+|+...|..
T Consensus 29 ~f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 29 LFVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GGTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred hcCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecC
Confidence 467999999995 8999999999998877766665543
|
| >d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose 6-phosphate dehydrogenase, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.38 E-value=0.26 Score=37.41 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=52.7
Q ss_pred CCeEEEECCccHHHHHH-HHH---HHHCC-----CeEEEEecCCCChhhhhhhhhccC------------CCCcEEEEEc
Q 020266 9 GKVVCVTGASGYIASWL-VKL---LLSRG-----YTVKASVRDPNDPKKTRHLLALDG------------ASERLQLFKA 67 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l-~~~---L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 67 (328)
..+++|.||||-+.+.- ... |...| ..|++++|++-+.+.......... ....+.++.+
T Consensus 20 ~~t~VIFGatGDLA~RKL~PALf~L~~~g~Lp~~~~Iig~aR~~~s~e~fr~~~~~~~~~~~~~~~~~~~f~~~~~Y~~~ 99 (203)
T d1qkia1 20 THIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAG 99 (203)
T ss_dssp CEEEEEETTTSHHHHHTHHHHHHHHHHTTCSCSSEEEEEEBSSCCSCHHHHHHHSCCTTCCGGGHHHHHHHHTTEECCBC
T ss_pred CcEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCcEEEEEECCCCCHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccC
Confidence 55689999999998652 222 33444 579999997765444433221110 1245888999
Q ss_pred cCCCcCchHHhhC---------CccEEEEccCC
Q 020266 68 NLLEEGSFDSIVD---------GCDGVCHTASP 91 (328)
Q Consensus 68 Dl~~~~~~~~~~~---------~~d~vih~a~~ 91 (328)
|+++++++.++-+ ....|+.+|-+
T Consensus 100 d~~~~~~~~~L~~~l~~~~~~~~~~rifYLAvp 132 (203)
T d1qkia1 100 QYDDAASYQRLNSHMNALHLGSQANRLFYLALP 132 (203)
T ss_dssp CTTCHHHHHHHHHHHHHTTTTTTSEEEEEECSC
T ss_pred cCCChhhHHHHHHHHHHHhcCCCcceEEEEecC
Confidence 9999887665422 23578888754
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.15 E-value=0.32 Score=37.78 Aligned_cols=32 Identities=25% Similarity=0.144 Sum_probs=28.5
Q ss_pred eEEEECCccHHHHHHHHHHHHCCC-eEEEEecCC
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGY-TVKASVRDP 43 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 43 (328)
+|+|+|| |.-|-..+.+|.++|+ +|.++-++.
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 5999996 9999999999999995 799998764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=86.63 E-value=0.84 Score=36.26 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=50.3
Q ss_pred CCCeEEEECC-ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.+++||=+|+ +|.+...|++.. |.+|++++-++.............+...+++++.+|..+...- -..+|+|+
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~---~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~---~~sfD~V~ 140 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKF---GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE---DNSYDFIW 140 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC---TTCEEEEE
T ss_pred CCCEEEEeCCCCcHHHhhhhccC---CcEEEEEeccchhhhhhhccccccccccccccccccccccccc---ccccchhh
Confidence 4678998887 676666655433 7899999988765544444433334446899999999775311 13579887
Q ss_pred Ecc
Q 020266 87 HTA 89 (328)
Q Consensus 87 h~a 89 (328)
-..
T Consensus 141 ~~~ 143 (282)
T d2o57a1 141 SQD 143 (282)
T ss_dssp EES
T ss_pred ccc
Confidence 543
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=86.62 E-value=0.39 Score=38.87 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=30.5
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCC
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPN 44 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 44 (328)
-.|+|+|| |+-|-..+.+|.+.|.+|.++.+.++
T Consensus 8 ~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGA-GFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 46999996 99999999999999999999998654
|
| >d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose 6-phosphate dehydrogenase, N-terminal domain species: Leuconostoc mesenteroides [TaxId: 1245]
Probab=86.54 E-value=2.1 Score=31.93 Aligned_cols=80 Identities=13% Similarity=0.215 Sum_probs=50.0
Q ss_pred EEEECCccHHHHHHHH-H---HHHCC-----CeEEEEecCCCChhhhhhhhh----ccC--------CCCcEEEEEccCC
Q 020266 12 VCVTGASGYIASWLVK-L---LLSRG-----YTVKASVRDPNDPKKTRHLLA----LDG--------ASERLQLFKANLL 70 (328)
Q Consensus 12 vlVtGatG~iG~~l~~-~---L~~~g-----~~V~~~~r~~~~~~~~~~~~~----~~~--------~~~~~~~~~~Dl~ 70 (328)
++|.||||-+.+.-+- . |...| ..|++++|+.-+.+....... ... .-.++.++++|+.
T Consensus 8 lVIFGaTGDLa~RKL~PAL~~L~~~g~lp~~~~Iig~aR~~~~~e~f~~~v~~~l~~~~~~~~~~~~~~~~~~y~~~~~~ 87 (195)
T d1h9aa1 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDVT 87 (195)
T ss_dssp EEEETTTSHHHHHTHHHHHHHHHHTTSSCSSEEEEEEESSCCCHHHHHHHHHHHHGGGCSCHHHHHHHHTTEEEEECCTT
T ss_pred EEEECcccHHHHhHHHHHHHHHHHcCCCCCCCEEEEEECCcCcHHHHHHHHHHHHhhccchHhhHHHHhhccceeeEeec
Confidence 5578999999875332 2 33344 579999998766555433211 110 1246889999999
Q ss_pred CcCchHHhhC-----------CccEEEEccCC
Q 020266 71 EEGSFDSIVD-----------GCDGVCHTASP 91 (328)
Q Consensus 71 ~~~~~~~~~~-----------~~d~vih~a~~ 91 (328)
++++..++.+ ....||.+|-+
T Consensus 88 ~~~~~~~l~~~l~~~~~~~~~~~~rifYLAvp 119 (195)
T d1h9aa1 88 DAASYAVLKEAIEEAADKFDIDGNRIFYMSVA 119 (195)
T ss_dssp CTTTHHHHHHHHHHHHHHHTCCSCEEEEECSC
T ss_pred cHhhHHHHHHHHHHHHhhcCCCcceEEEEecC
Confidence 9887654332 23578888854
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=86.47 E-value=0.31 Score=36.25 Aligned_cols=77 Identities=13% Similarity=0.165 Sum_probs=47.6
Q ss_pred CCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccC-----------CCCcEEEEEccCCCcCch
Q 020266 7 AAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG-----------ASERLQLFKANLLEEGSF 75 (328)
Q Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dl~~~~~~ 75 (328)
..+++||..|+.- |+ .+..|+++|++|++++.++...+......+... ......++.+|..+....
T Consensus 19 ~~~~rvLd~GCG~--G~-~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 19 VPGARVLVPLCGK--SQ-DMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CTTCEEEETTTCC--SH-HHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEecCcC--CH-HHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 3578999999743 33 555788889999999998766554433322111 123457778887664422
Q ss_pred HHhhCCccEEEEc
Q 020266 76 DSIVDGCDGVCHT 88 (328)
Q Consensus 76 ~~~~~~~d~vih~ 88 (328)
. ....|.|+-.
T Consensus 96 ~--~~~~D~i~~~ 106 (201)
T d1pjza_ 96 D--IGHCAAFYDR 106 (201)
T ss_dssp H--HHSEEEEEEE
T ss_pred c--ccceeEEEEE
Confidence 1 2345777653
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=86.32 E-value=0.41 Score=38.99 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=24.1
Q ss_pred CeEEEEC-Cc-cHH--HHHHHHHHHHCCCeEEEEecCC
Q 020266 10 KVVCVTG-AS-GYI--ASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 10 ~~vlVtG-at-G~i--G~~l~~~L~~~g~~V~~~~r~~ 43 (328)
|||+|++ || |.+ ..+|+++|.++||+|..+....
T Consensus 1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~~ 38 (351)
T d1f0ka_ 1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTAD 38 (351)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence 5677765 44 333 3458899999999999887543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.14 E-value=0.63 Score=35.37 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=56.3
Q ss_pred CCCeEEEECC-ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.+++||=.|+ ||..-.++++.. ..| +|++++.++...+.+.+.... ..++.++.+|..++......+..+|+|+
T Consensus 56 pg~~VLDlGcG~G~~~~~la~~v-~~g-~V~gvDis~~~i~~a~~~a~~---~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 56 GDERVLYLGAASGTTVSHLADIV-DEG-IIYAVEYSAKPFEKLLELVRE---RNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHT-TTS-EEEEECCCHHHHHHHHHHHHH---CSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCCEEEEeCCcCCHHHHHHHHhc-cCC-eEEEEeCCHHHHHHHHHHhhc---cCCceEEEeeccCccccccccceEEEEE
Confidence 4678887775 677777776644 455 899999988766655444332 2579999999999888877777889988
Q ss_pred Ecc
Q 020266 87 HTA 89 (328)
Q Consensus 87 h~a 89 (328)
|.-
T Consensus 131 ~~~ 133 (209)
T d1nt2a_ 131 QDI 133 (209)
T ss_dssp ECC
T ss_pred ecc
Confidence 753
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=85.81 E-value=2.1 Score=31.13 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=33.6
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhc
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLAL 55 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~ 55 (328)
||.|-| -|-||+.+.+.+++++.+|.++.-...+.+.+..+++-
T Consensus 2 kIgING-fGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlky 45 (169)
T d1dssg1 2 KIGING-FGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKY 45 (169)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHC
T ss_pred eEEEEC-CcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhc
Confidence 578888 79999999999999998877765544556666666543
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=85.67 E-value=2 Score=31.14 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=49.8
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCC----cEEE------------EEccCCCcC
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE----RLQL------------FKANLLEEG 73 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~------------~~~Dl~~~~ 73 (328)
+||.|-| -|-||+.+.|.|.+++.+|.++.- ..+.+.+..+++-..-+. .++. ....-.+++
T Consensus 1 ikigING-fGRIGR~~~R~l~~~~i~iv~INd-~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~ 78 (168)
T d2g82a1 1 MKVGING-FGRIGRQVFRILHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK 78 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEC-SSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred CEEEEEC-CcHHHHHHHHHHhcCCCEEEEECC-CcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChH
Confidence 4788888 599999999999999998877654 345666666654332111 1111 011112333
Q ss_pred chHHhhCCccEEEEccCCCC
Q 020266 74 SFDSIVDGCDGVCHTASPFY 93 (328)
Q Consensus 74 ~~~~~~~~~d~vih~a~~~~ 93 (328)
++.=.-.++|+|+-|.|.+.
T Consensus 79 ~i~W~~~gvdiViEcTG~f~ 98 (168)
T d2g82a1 79 EIPWAEAGVGVVIESTGVFT 98 (168)
T ss_dssp GCCTGGGTEEEEEECSSSCC
T ss_pred HCcccccCCceeEecccccc
Confidence 32212236899999998743
|
| >d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD domain: MrsD species: Bacillus sp. hil-y85/54728 [TaxId: 69002]
Probab=85.53 E-value=0.17 Score=37.82 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=25.2
Q ss_pred cccCCCCeEE--EECCccHHH-HHHHHHHHHCCCeEEEEecC
Q 020266 4 VAAAAGKVVC--VTGASGYIA-SWLVKLLLSRGYTVKASVRD 42 (328)
Q Consensus 4 ~~~~~~~~vl--VtGatG~iG-~~l~~~L~~~g~~V~~~~r~ 42 (328)
|+.+++|||+ |||+-+-++ ..+++.|.+.|++|.++...
T Consensus 1 ms~l~~KkIllgvTGsiaa~k~~~l~~~L~~~g~eV~vv~T~ 42 (183)
T d1p3y1_ 1 ISILKDKKLLIGICGSISSVGISSYLLYFKSFFKEIRVVMTK 42 (183)
T ss_dssp CTTGGGCEEEEEECSCGGGGGTHHHHHHHTTTSSEEEEEECH
T ss_pred CCCcCCCEEEEEEeCHHHHHHHHHHHHHHHHCCCeEEEEEEc
Confidence 3444578765 445443332 47778888889999887643
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=84.70 E-value=0.86 Score=31.93 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=29.9
Q ss_pred CCCeEEEECCc---cHHHHHHHHHHHHCCCeEEEEecC
Q 020266 8 AGKVVCVTGAS---GYIASWLVKLLLSRGYTVKASVRD 42 (328)
Q Consensus 8 ~~~~vlVtGat---G~iG~~l~~~L~~~g~~V~~~~r~ 42 (328)
+.|+|.|+||| +-.|..+++.|.+.|+.+..+.-+
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~ 49 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPR 49 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGG
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEec
Confidence 47899999998 669999999999999998776543
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.63 E-value=0.55 Score=38.20 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=28.2
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCC
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (328)
|+|+|| |.-|-..+..|.++|++|+++-++.
T Consensus 2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 789995 9999999999999999999998754
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.44 E-value=0.51 Score=36.47 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=57.5
Q ss_pred CCCeEEEEC-CccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTG-ASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.+++||=.| |+|+.-.+|++..-..| .|++++.++.....+..... ....+..+.+|..+++.+......+|+|+
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~VG~~G-~V~aVD~s~~~l~~a~~~a~---~~~~~~~i~~d~~~~~~~~~~~~~vD~i~ 148 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIVGWEG-KIFGIEFSPRVLRELVPIVE---ERRNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHS---SCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHH---hcCCceEEEEECCCcccccccccceEEEE
Confidence 367888665 57888889888654445 89999998876655444332 23568889999999888777777889998
Q ss_pred Ecc
Q 020266 87 HTA 89 (328)
Q Consensus 87 h~a 89 (328)
+..
T Consensus 149 ~d~ 151 (227)
T d1g8aa_ 149 EDV 151 (227)
T ss_dssp ECC
T ss_pred EEc
Confidence 753
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=84.37 E-value=1.3 Score=36.37 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=53.4
Q ss_pred CCCeEEEECCccHHHHHHHHHHHH-CC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEE
Q 020266 8 AGKVVCVTGASGYIASWLVKLLLS-RG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGV 85 (328)
Q Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~-~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 85 (328)
.-+++.|+| +|..+..-++.|.. .+ .+|.+.+|++++...+...+.. ..++.+..+ ++++++++++|+|
T Consensus 127 da~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~---~~g~~v~~~-----~s~~eav~~ADIi 197 (340)
T d1x7da_ 127 NARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE---YSGLTIRRA-----SSVAEAVKGVDII 197 (340)
T ss_dssp TCCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT---CTTCEEEEC-----SSHHHHHTTCSEE
T ss_pred CCceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhh---ccCCCceec-----CCHHHHHhcCCce
Confidence 357899999 68999988888766 45 5799999998776665544422 124554443 4688899999999
Q ss_pred EEccC
Q 020266 86 CHTAS 90 (328)
Q Consensus 86 ih~a~ 90 (328)
+-+.+
T Consensus 198 ~t~Ta 202 (340)
T d1x7da_ 198 TTVTA 202 (340)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 97765
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.25 E-value=0.79 Score=32.87 Aligned_cols=34 Identities=29% Similarity=0.118 Sum_probs=28.4
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCCCe-EEEEecCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRGYT-VKASVRDP 43 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~ 43 (328)
+++|+|+|| |.+|--.+..+++.|.+ |+++.|..
T Consensus 45 ~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 578999986 99999999999999865 77777643
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.21 E-value=0.81 Score=34.57 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=26.2
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEec
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVR 41 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r 41 (328)
|||++.| ++..|..+.+.|.++||+|.++..
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t 31 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFT 31 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEc
Confidence 5788887 567899999999999999987654
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.17 E-value=0.8 Score=29.51 Aligned_cols=30 Identities=23% Similarity=0.168 Sum_probs=25.6
Q ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEe
Q 020266 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASV 40 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 40 (328)
|||||.| +|.=-.+|++.|.+++++|++.-
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~~v~~~p 30 (90)
T d1vkza2 1 VRVHILG-SGGREHAIGWAFAKQGYEVHFYP 30 (90)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCeEEEec
Confidence 6899999 57778999999999998888763
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=84.10 E-value=1.3 Score=34.59 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=50.9
Q ss_pred CCCeEEEECC-ccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccEEE
Q 020266 8 AGKVVCVTGA-SGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDGVC 86 (328)
Q Consensus 8 ~~~~vlVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 86 (328)
.+++||=.|+ ||.+..++++.+...| +|++++++++..+...+.+.......++++..+|+.+.-. -..+|.||
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~g-~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~----~~~fD~V~ 159 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS----DQMYDAVI 159 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC----SCCEEEEE
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc----cceeeeee
Confidence 4788998874 6888888888775544 8999998876555433333333334689999999876421 12478887
Q ss_pred E
Q 020266 87 H 87 (328)
Q Consensus 87 h 87 (328)
-
T Consensus 160 l 160 (250)
T d1yb2a1 160 A 160 (250)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=84.07 E-value=0.52 Score=38.98 Aligned_cols=30 Identities=23% Similarity=0.133 Sum_probs=27.6
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecC
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRD 42 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (328)
|+|+| +|+-|..++.+|.+.|++|.++-+-
T Consensus 5 VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 5 AVVIG-TGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEeC-cCHHHHHHHHHHHHCcCeEEEEecC
Confidence 78898 6999999999999999999999874
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=83.69 E-value=0.61 Score=36.07 Aligned_cols=33 Identities=18% Similarity=0.009 Sum_probs=29.7
Q ss_pred EEEECCccHHHHHHHHHHHHCCCeEEEEecCCCC
Q 020266 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPND 45 (328)
Q Consensus 12 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 45 (328)
|+|+|| |..|...+..|.+.|++|.++.+.+..
T Consensus 5 ViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 5 VIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 899996 999999999999999999999986543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.66 E-value=0.49 Score=33.92 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=50.6
Q ss_pred CCCCeEE-EECCccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 7 AAGKVVC-VTGASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 7 ~~~~~vl-VtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
.++++|| +..|||.+|-. .+.+| .+|+.+..++...+.............+++++++|..+ .+...-+.+|+
T Consensus 13 ~~g~~vlDl~~GtG~~~ie----a~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~--~l~~~~~~fDi 86 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIE----AVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER--AIDCLTGRFDL 86 (152)
T ss_dssp CCSCEEEEETCTTCHHHHH----HHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH--HHHHBCSCEEE
T ss_pred CCCCeEEEcCCccCHHHHH----HHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc--cccccccccce
Confidence 4678887 55678887763 34567 48999999887766555444444445679999999754 23333456898
Q ss_pred EEEc
Q 020266 85 VCHT 88 (328)
Q Consensus 85 vih~ 88 (328)
|+-.
T Consensus 87 If~D 90 (152)
T d2esra1 87 VFLD 90 (152)
T ss_dssp EEEC
T ss_pred eEec
Confidence 8743
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.40 E-value=0.97 Score=35.08 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=30.0
Q ss_pred cCCCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecC
Q 020266 6 AAAGKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRD 42 (328)
Q Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~ 42 (328)
+.++++|+|-|- |-+|.++++.|.+. |..|+++.-.
T Consensus 29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~ 65 (239)
T d1gtma1 29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS 65 (239)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence 467899999995 99999999999865 8988877643
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=83.39 E-value=0.38 Score=34.65 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=28.6
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCChhh
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKK 48 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 48 (328)
||.++| .|..|..+++.|++.|+.| +..|+.++...
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~ 37 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFPTL-VWNRTFEKALR 37 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSCEE-EECSSTHHHHH
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCCEE-EEeCCHHHHHH
Confidence 588899 5999999999999999866 56666655544
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=83.34 E-value=0.5 Score=35.72 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.8
Q ss_pred CeEEEECCccHHHH-----HHHHHHHHCCCeEEEEe
Q 020266 10 KVVCVTGASGYIAS-----WLVKLLLSRGYTVKASV 40 (328)
Q Consensus 10 ~~vlVtGatG~iG~-----~l~~~L~~~g~~V~~~~ 40 (328)
|+++|||-...+|+ +|+..|.++|++|..++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 68999994336665 68888999999998885
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=83.28 E-value=0.6 Score=38.64 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=59.3
Q ss_pred CCeEE-EECCccHHHHHHHHHHHHCCCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc-hHHhhCCccEEE
Q 020266 9 GKVVC-VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIVDGCDGVC 86 (328)
Q Consensus 9 ~~~vl-VtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~vi 86 (328)
..+|+ +-+|+|.+|-.|+ +.+.+|+++..+++..+....-... ..-.+++++.+|..+.-. .......+|+||
T Consensus 213 ~~~vlDLycG~G~fsl~La----~~~~~V~gvE~~~~ai~~A~~na~~-n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 213 EDRVLDLFCGMGNFTLPLA----TQAASVVGVEGVPALVEKGQQNARL-NGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp TCEEEEESCTTTTTHHHHH----TTSSEEEEEESCHHHHHHHHHHHHH-TTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CceEEEecccccccchhcc----ccccEEEeccCcHHHHHHHHHhHHh-cccccceeeecchhhhhhhhhhhhccCceEE
Confidence 34444 6789999998765 5678999999877655443222211 123578999999875422 222233578876
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecc
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSS 132 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS 132 (328)
=. |+..-. ..+++...+. +.+++||+|.
T Consensus 288 lD----------PPR~G~-------~~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 288 LD----------PARAGA-------AGVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp EC----------CCTTCC-------HHHHHHHHHH-CCSEEEEEES
T ss_pred eC----------CCCccH-------HHHHHHHHHc-CCCEEEEEeC
Confidence 32 111111 1223333333 5689999998
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=83.01 E-value=1.1 Score=32.47 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=54.2
Q ss_pred CeEEEECCccHHHHH-HHHHHHHC-CCeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhh-CCccEEE
Q 020266 10 KVVCVTGASGYIASW-LVKLLLSR-GYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIV-DGCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~-l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~d~vi 86 (328)
+||.|+|+ |.+|+. ....|.+. +.++.+.+++++....+...++. ..+. +|.+ +++ .++|+|+
T Consensus 2 irvgiiG~-G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~~---~~~~---~ll~~~iD~V~ 67 (167)
T d1xeaa1 2 LKIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRV-------SATC---TDYR---DVLQYGVDAVM 67 (167)
T ss_dssp EEEEEECC-CHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTC-------CCCC---SSTT---GGGGGCCSEEE
T ss_pred eEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccc-------cccc---ccHH---Hhcccccceec
Confidence 57999995 888865 56666555 46776666665555444443211 1111 2222 333 3689888
Q ss_pred EccCCCCC----------CCCCcchhhhhHHHHHHHHHHHHHhcCCCc
Q 020266 87 HTASPFYH----------DAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124 (328)
Q Consensus 87 h~a~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~ 124 (328)
-+...... .-.-..+.-+..|..-+..|.+++++. +.
T Consensus 68 I~tp~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~-~~ 114 (167)
T d1xeaa1 68 IHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKH-HQ 114 (167)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHT-TC
T ss_pred ccccccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHc-CC
Confidence 76542100 000001122345677788888888887 44
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.79 E-value=2.3 Score=34.10 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=47.4
Q ss_pred CCCCeEEEECCc-cHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhCCccE
Q 020266 7 AAGKVVCVTGAS-GYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVDGCDG 84 (328)
Q Consensus 7 ~~~~~vlVtGat-G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 84 (328)
.++++||-.|+. |.+ +..+++.| .+|+++..++... .............+++++.+|+.+.... .+.+|+
T Consensus 34 ~~~~~VLDiGcG~G~l----sl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~---~~~~D~ 105 (311)
T d2fyta1 34 FKDKVVLDVGCGTGIL----SMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLP---VEKVDV 105 (311)
T ss_dssp TTTCEEEEETCTTSHH----HHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCS---CSCEEE
T ss_pred CCcCEEEEECCCCCHH----HHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCc---cccceE
Confidence 468899999854 444 34455677 4799999876432 2222333334456899999999875422 246899
Q ss_pred EEEc
Q 020266 85 VCHT 88 (328)
Q Consensus 85 vih~ 88 (328)
|+-.
T Consensus 106 Ivse 109 (311)
T d2fyta1 106 IISE 109 (311)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9863
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.57 E-value=3.8 Score=33.07 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=63.6
Q ss_pred CCeEEEEC-CccHHHHHHHHHHHHCC-CeEEEEecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc-hHHhhCCccEE
Q 020266 9 GKVVCVTG-ASGYIASWLVKLLLSRG-YTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS-FDSIVDGCDGV 85 (328)
Q Consensus 9 ~~~vlVtG-atG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~v 85 (328)
+++||=.| ++|..+-+++ ..| .+|++++.++...+...+.....+...+++++.+|+.+.-. +...-+.+|.|
T Consensus 146 g~~VLDl~~g~G~~si~~a----~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAA----IAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp TCEEEETTCTTTHHHHHHH----HTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCeeecccCcccchhhhhh----hcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 67787544 4566655433 456 47999999987666554444333334578999999764311 11112368999
Q ss_pred EEccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCC-ccEEEEecc
Q 020266 86 CHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS-IKRVVLTSS 132 (328)
Q Consensus 86 ih~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~v~~SS 132 (328)
|.....+.... .....-...-..++..+.+.-. .+.+|+.|.
T Consensus 222 i~DpP~~~~~~-----~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 222 VLDPPAFVQHE-----KDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp EECCCCSCSSG-----GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred hcCCccccCCH-----HHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 97765433211 1122223345556666655422 234555544
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=82.50 E-value=2.8 Score=32.13 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=45.8
Q ss_pred CcccccCCCCeEEEECCc---cHHHHHHHHHHHHC--CCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCc
Q 020266 1 MSSVAAAAGKVVCVTGAS---GYIASWLVKLLLSR--GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGS 74 (328)
Q Consensus 1 ~~~~~~~~~~~vlVtGat---G~iG~~l~~~L~~~--g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 74 (328)
|+++.+.+..+|.|+|.. |+++..-+..|.+. +.+|.++ +++.+..+.....++. +.... +++
T Consensus 8 ~~~~~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~----~~~~~-------~~~ 76 (237)
T d2nvwa1 8 LSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQL----KHATG-------FDS 76 (237)
T ss_dssp GGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTC----TTCEE-------ESC
T ss_pred cccCCCCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhccc----cccee-------ecc
Confidence 445556667899999974 56777666667653 5787765 4554444433333211 11221 245
Q ss_pred hHHhhC--CccEEEEcc
Q 020266 75 FDSIVD--GCDGVCHTA 89 (328)
Q Consensus 75 ~~~~~~--~~d~vih~a 89 (328)
++++++ .+|+|+-+.
T Consensus 77 ~~~l~~~~~iD~V~i~t 93 (237)
T d2nvwa1 77 LESFAQYKDIDMIVVSV 93 (237)
T ss_dssp HHHHHHCTTCSEEEECS
T ss_pred hhhcccccccceeeccC
Confidence 666664 578888775
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=82.34 E-value=0.57 Score=39.42 Aligned_cols=32 Identities=25% Similarity=0.157 Sum_probs=24.0
Q ss_pred CeEEEECC------ccHHH---HHHHHHHHHCCCeEEEEec
Q 020266 10 KVVCVTGA------SGYIA---SWLVKLLLSRGYTVKASVR 41 (328)
Q Consensus 10 ~~vlVtGa------tG~iG---~~l~~~L~~~g~~V~~~~r 41 (328)
||||+++. +|++| ..|+++|.+.||+|.++..
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp 41 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 41 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 56777553 35555 6779999999999999874
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.29 E-value=3.2 Score=30.72 Aligned_cols=47 Identities=23% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCeEEEECCccHHHHHHHHHHHHCC-----CeEEEEecCCCChhhhhhhhhcc
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSRG-----YTVKASVRDPNDPKKTRHLLALD 56 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~ 56 (328)
+++|.|-| -|-||+.+.|.+++++ .+|.++.-...+.+.+..+++-.
T Consensus 2 ~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyD 53 (190)
T d1k3ta1 2 PIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYD 53 (190)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEE
T ss_pred CeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhcc
Confidence 45899999 7999999999999875 24454444445666666665433
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=82.03 E-value=1 Score=32.46 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=24.4
Q ss_pred CCeEEEECCccHHHHHHH-HHHHHC-CCeEEEE-ecCCCC
Q 020266 9 GKVVCVTGASGYIASWLV-KLLLSR-GYTVKAS-VRDPND 45 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~-~~L~~~-g~~V~~~-~r~~~~ 45 (328)
..||.|.| +|.+|+.+. +.|.+. ..++.++ +|+...
T Consensus 4 kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~ 42 (157)
T d1nvmb1 4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS 42 (157)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhc
Confidence 46899999 899998654 555444 3577666 455543
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=81.78 E-value=0.36 Score=33.49 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=54.9
Q ss_pred CeEEEECCccHHHHHHHHHHHH-CCCeEEEEec-CCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC-CccEEE
Q 020266 10 KVVCVTGASGYIASWLVKLLLS-RGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD-GCDGVC 86 (328)
Q Consensus 10 ~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~vi 86 (328)
.+|+|.|| |.+|+.|++++.. .|+++.++-- ++..... .-.++..+. ++.+.++.+ .+++++
T Consensus 4 ~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~---------~I~Gi~V~~-----~~~l~~~~~~~i~iai 68 (126)
T d2dt5a2 4 WGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGR---------PVRGGVIEH-----VDLLPQRVPGRIEIAL 68 (126)
T ss_dssp EEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC---------EETTEEEEE-----GGGHHHHSTTTCCEEE
T ss_pred ceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC---------EECCEEEec-----HHHHHHHHhhcccEEE
Confidence 47999995 9999999998754 4788887655 4333221 012445442 244555554 455544
Q ss_pred EccCCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCCccEEEEecch
Q 020266 87 HTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133 (328)
Q Consensus 87 h~a~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~v~~SS~ 133 (328)
-+.. ....+.+++.|.+. +++.+..++..
T Consensus 69 ~~i~-----------------~~~~~~I~d~l~~~-gIk~I~~f~~~ 97 (126)
T d2dt5a2 69 LTVP-----------------REAAQKAADLLVAA-GIKGILNFAPV 97 (126)
T ss_dssp ECSC-----------------HHHHHHHHHHHHHH-TCCEEEECSSS
T ss_pred EeCC-----------------HHHHHHHHHHHHHc-CCCEEeecCce
Confidence 3321 11234567777776 78878887764
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=81.72 E-value=0.85 Score=35.49 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=30.8
Q ss_pred eEEEECCccHHHHHHHHHHHHCCCeEEEEecCCCCh
Q 020266 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDP 46 (328)
Q Consensus 11 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 46 (328)
-|+|+|| |--|-..+..|.++|++|.++.+.+...
T Consensus 6 DViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~~G 40 (253)
T d2gqfa1 6 ENIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKKIG 40 (253)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred cEEEECc-CHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 4999996 9999999999999999999999876543
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=81.66 E-value=0.36 Score=38.43 Aligned_cols=35 Identities=17% Similarity=0.052 Sum_probs=30.1
Q ss_pred CCeEEEECCccHHHHHHHHHHHHC-CCeEEEEecCCC
Q 020266 9 GKVVCVTGASGYIASWLVKLLLSR-GYTVKASVRDPN 44 (328)
Q Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~ 44 (328)
..-|+|+|| |.-|-..+..|+++ |++|.++.+.+.
T Consensus 33 e~DViVIGa-GpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 33 ETDVVVVGA-GSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CCCEEEECC-CHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 345999997 99999999999875 999999998653
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=80.68 E-value=0.72 Score=35.33 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=41.9
Q ss_pred CCeEEEECCccHHHH-HHHHHHHHC-CCeEEEE-ecCCCChhhhhhhhhccCCCCcEEEEEccCCCcCchHHhhC--Ccc
Q 020266 9 GKVVCVTGASGYIAS-WLVKLLLSR-GYTVKAS-VRDPNDPKKTRHLLALDGASERLQLFKANLLEEGSFDSIVD--GCD 83 (328)
Q Consensus 9 ~~~vlVtGatG~iG~-~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 83 (328)
.-+|.|+|+ |.+|+ +++..|... +.+|+++ +|++++.+...+.++... .++. ...+++++++ ++|
T Consensus 33 ~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~--~~~~-------~~~d~~ell~~~~iD 102 (221)
T d1h6da1 33 RFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDP--RKIY-------DYSNFDKIAKDPKID 102 (221)
T ss_dssp CEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCG--GGEE-------CSSSGGGGGGCTTCC
T ss_pred CEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhcccc--cccc-------ccCchhhhcccccce
Confidence 347999995 89996 677776664 6777754 566655555444332110 1111 1234555565 588
Q ss_pred EEEEccC
Q 020266 84 GVCHTAS 90 (328)
Q Consensus 84 ~vih~a~ 90 (328)
+|+-+..
T Consensus 103 ~V~I~tp 109 (221)
T d1h6da1 103 AVYIILP 109 (221)
T ss_dssp EEEECSC
T ss_pred eeeeccc
Confidence 8886553
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.35 E-value=0.66 Score=35.49 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=28.9
Q ss_pred CCeEEEECCccHHHH-----HHHHHHHHCCCeEEEEecCC
Q 020266 9 GKVVCVTGASGYIAS-----WLVKLLLSRGYTVKASVRDP 43 (328)
Q Consensus 9 ~~~vlVtGatG~iG~-----~l~~~L~~~g~~V~~~~r~~ 43 (328)
+|.|.|+|+-|.+|+ +|+.+|++.|++|.+++-+.
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~ 41 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 577999999888886 57778888999999998653
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=80.25 E-value=2.3 Score=35.56 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=54.6
Q ss_pred cccCCCCeEEEECCccHHHHHHHHHHHHCCCeEEEEecCC-CChhhhh-hhhhccCCCCcEEEEEccCCCcCc---hHHh
Q 020266 4 VAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDP-NDPKKTR-HLLALDGASERLQLFKANLLEEGS---FDSI 78 (328)
Q Consensus 4 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~ 78 (328)
+-.+.+-+|+=.+ +..-|-.-.+.|++.|.+|+=+-+.. .+..... ...... +.+-+.+..|+.+++. +.++
T Consensus 6 ~gPL~GirVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~--n~~K~si~ldl~~~~G~~~~~~L 82 (402)
T d1xk7a1 6 FGPLAGLRVVFSG-IEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLS--RRNLHALSLNIFKDEGREAFLKL 82 (402)
T ss_dssp CSTTTTCEEEEEC-CSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHH--TTTCEEEEECTTSHHHHHHHHHH
T ss_pred CcCCCCCEEEEeC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHh--CCCCeEEEEeCcCHHHHHHHHHH
Confidence 3456777887665 34557777777888899999887533 2211111 111111 2345678899998764 6677
Q ss_pred hCCccEEEEccCC
Q 020266 79 VDGCDGVCHTASP 91 (328)
Q Consensus 79 ~~~~d~vih~a~~ 91 (328)
++.+|+||++--+
T Consensus 83 v~~aDv~i~n~rp 95 (402)
T d1xk7a1 83 METTDIFIEASKG 95 (402)
T ss_dssp HTTCSEEEEECSS
T ss_pred HhhcCCceeeecc
Confidence 8899999998543
|