Citrus Sinensis ID: 020267

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKVDKKETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLERQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISSSYQQPQNVFDPSSRASVGKEDRPEVSGNDL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
myqpnsvpssslvrsnslvhgqhldcgssqmdpmnggnslnnnpslaskqRLRWTHELHERFVDAVaqlggpdratpkgvlrVMGVQGLTIYHVKSHLQKYRLakylpdsssdgkkvdkketgdmlssldgssgMQITEALKLQMEVQKRLHEQLERQLQLRIEAQGKYLKKIIEEQQRLSgvlteapgsggsapasgdncqepdkktdpatpaptsesplqdkaakehvpakslsldesfssqnepltpdsgcnvsspsqspkgersmkkQRVDMETayakpemvlthpilessisssyqqpqnvfdpssrasvgkedrpevsgndl
Flexible Loop (DISEMBL)
myqpnsvpssslVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAvaqlggpdratpkGVLRVMGVQGLTIYHVKSHLQKYRLakylpdsssdgkkvdkketgdmlssldgssGMQITEALKLQMEVQKRLHEQLERQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPtsesplqdkaAKEHVPAKSLSLDESFSSQnepltpdsgcnvsspsqspkgersmkkqRVDMETAYAKPEMVLTHPILESSISSSYQQPQNvfdpssrasvgkedrpevsgndl
Low Complexity Region (SEG)
MYQpnsvpssslvrsnslVHGQHLDCGSSQMDpmnggnslnnnpslASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPdsssdgkkvdkkETgdmlssldgssgmQITEALKLQMEVQKrlheqlerqlqlrieAQGKYLKKIIEEQQRLSGVLTEapgsggsapasgDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISSSYQQPQNVFDPSSRASVGKEDRPEVSGNDL
Disordered region (IsUnstruct)
***************************************************LRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL***************************************************LQLRIEAQGKYLKKII**********************************************************************************************************************************************************
Disordered Region (DISOPRED)
****************************************************RWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR*************************************************************E********************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**************SNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP*************TGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLERQLQLRIEAQGKYLKKIIEEQQRLSGVLT****************************************************************************************VDMETAYAKPEMVLTHPILESSIS*******************************
Disordered Region (DISPRO)
**************************************************RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL**************************GMQITEALKLQMEVQKRLHEQLERQLQLRIEAQGKYLKKIIEEQQRLS********************************************************************************************************VL*****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKVDKKETGDMLSSLDGSSGMQIxxxxxxxxxxxxxxxxxxxxxLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISSSYQQPQNVFDPSSRASVGKEDRPEVSGNDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.448	0.355	0.568	1e-39
Q9SAK5	358	Myb family transcription	no	no	0.399	0.365	0.584	3e-37
Q9C616	388	Probable transcription fa	no	no	0.310	0.262	0.418	9e-15
Q93WJ9	403	Transcription repressor K	no	no	0.195	0.158	0.606	2e-14
Q941I2	322	Probable transcription fa	no	no	0.280	0.285	0.45	1e-13
Q9FJV5	276	Probable transcription fa	no	no	0.213	0.253	0.542	3e-13
Q0J235	532	Probable transcription fa	no	no	0.222	0.137	0.512	3e-13
Q700D9	255	Putative Myb family trans	no	no	0.158	0.203	0.692	5e-13
Q9FGT7	635	Two-component response re	no	no	0.204	0.105	0.480	1e-10
O49397	552	Two-component response re	no	no	0.192	0.114	0.5	3e-10

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/153 (56%), Positives = 116/153 (75%), Gaps = 6/153 (3%)

Query: 32  DPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTI 91
           D ++G NS  ++    SKQR+RWT ELHE FV+AV QLGG +RATPK VL+++   GLTI
Sbjct: 216 DQLSGRNS--SSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTI 273

Query: 92  YHVKSHLQKYRLAKYLPDSSS-DGKKVDKKETG-DMLSSLDGSSGMQITEALKLQMEVQK 149
           YHVKSHLQKYR A+Y P++S   G+  +KK T  + + SLD  + ++IT+AL+LQMEVQK
Sbjct: 274 YHVKSHLQKYRTARYKPETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEVQK 333

Query: 150 RLHEQLE--RQLQLRIEAQGKYLKKIIEEQQRL 180
           RLHEQLE  R LQL+IE QG+YL+ + E+QQ++
Sbjct: 334 RLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKI 366

Transcription factor acting as central integrator of phosphate starvation responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/142 (58%), Positives = 103/142 (72%), Gaps = 11/142 (7%)

Query: 49  KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK--- 105
           K RLRWT ELHERFVDAVAQLGGPD+ATPK ++RVMGV+GLT+YH+KSHLQK+RL K   
Sbjct: 34  KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93

Query: 106 --YLPDSSSDGKKVDKKETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLE--RQLQL 161
             Y   S+ +G +       D+  ++  SSGM      ++QMEVQ+RLHEQLE  R LQL
Sbjct: 94  KEYGDHSTKEGSRASAM---DIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQL 150

Query: 162 RIEAQGKYLKKIIEEQ-QRLSG 182
           RIEAQGKY++ I+E   Q L+G
Sbjct: 151 RIEAQGKYMQSILERACQTLAG 172

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 8/110 (7%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDS 110
           R+RWT  LH RFV AV  LGG +RATPK VL +M V+ LT+ HVKSHLQ YR  K    +
Sbjct: 215 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKA 274

Query: 111 SSDGKKVDKKETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLERQLQ 160
           ++   + D  E        +GSSG   ++     M  + R  E+L   L+
Sbjct: 275 AASSGQSDVYE--------NGSSGDNNSDDWMFDMNRKSRDSEELTNPLE 316

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 46/66 (69%), Gaps = 2/66 (3%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL--P 108
           R+RWT  LH RFV AV  LGG +RATPK VL +M V+ LT+ HVKSHLQ YR  K    P
Sbjct: 221 RMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKP 280

Query: 109 DSSSDG 114
            +SSDG
Sbjct: 281 AASSDG 286

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 57/100 (57%), Gaps = 8/100 (8%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL--P 108
           R+RWT  LH  FV AV  LGG +RATPK VL +M VQ LT+ HVKSHLQ YR  K    P
Sbjct: 166 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEKP 225

Query: 109 DSSS------DGKKVDKKETGDMLSSLDGSSGMQITEALK 142
            +SS      +G +V+ +     L+ L  +S  +    LK
Sbjct: 226 TTSSGQSDCENGSQVNSEREARNLTGLWNNSSSEARFQLK 265

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 45/70 (64%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDS 110
           R+RWT  LH  FV AV  LGG +RATPK VL +M V+ LT+ HVKSHLQ YR  K     
Sbjct: 107 RMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKG 166

Query: 111 SSDGKKVDKK 120
           S    KV+K+
Sbjct: 167 SPGEGKVEKE 176

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 48/78 (61%), Gaps = 5/78 (6%)

Query: 33  PMNGGNSLNNNPSLASKQ-----RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQ 87
           P  G  +    P L +K+     R+RWT  LH RFV AV  LGG +RATPK VL +M V+
Sbjct: 303 PFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVK 362

Query: 88  GLTIYHVKSHLQKYRLAK 105
            LT+ HVKSHLQ YR  K
Sbjct: 363 DLTLAHVKSHLQMYRTVK 380

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 40/52 (76%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102
           RLRWT ELH  FV AV  LGG  +ATPK VL++M V+GLTI HVKSHLQ YR
Sbjct: 25  RLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 10/77 (12%)

Query: 49  KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 108
           K R+ W+ ELH++FV AV QLG  D+A PK +L +M ++GLT  +V SHLQKYRL  YL 
Sbjct: 194 KPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRL--YL- 249

Query: 109 DSSSDGKKVDKKETGDM 125
                 KK+D+ +  +M
Sbjct: 250 ------KKIDEGQQQNM 260

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 41  NNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQK 100
           N++P+   K R+ WTHELH +F+ AV  L G +RA PK +L +M V  LT  +V SHLQK
Sbjct: 175 NDDPTAQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQK 233

Query: 101 YRLA 104
           +R+A
Sbjct: 234 FRVA 237

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
359496884	336	PREDICTED: uncharacterized protein LOC10	0.978	0.955	0.818	1e-151
255568528	336	transcription factor, putative [Ricinus	0.993	0.970	0.812	1e-149
224124782	314	predicted protein [Populus trichocarpa]	0.926	0.968	0.805	1e-138
147840891	306	hypothetical protein VITISV_035498 [Viti	0.887	0.950	0.83	1e-137
255638496	329	unknown [Glycine max]	0.908	0.905	0.787	1e-132
356555797	329	PREDICTED: uncharacterized protein LOC10	0.908	0.905	0.787	1e-132
224089499	360	predicted protein [Populus trichocarpa]	0.993	0.905	0.737	1e-132
388498370	321	unknown [Lotus japonicus]	0.945	0.965	0.725	1e-128
357448191	330	Two-component response regulator EHD1 [M	0.917	0.912	0.775	1e-123
217073354	330	unknown [Medicago truncatula]	0.917	0.912	0.768	1e-122

>gi|359496884|ref|XP_002272588.2| PREDICTED: uncharacterized protein LOC100248144 [Vitis vinifera]

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 270/330 (81%), Positives = 290/330 (87%), Gaps = 9/330 (2%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MYQP +VPS SLV +NSLVHGQH DCG++ MDP+NGGNSLNNNPSLASKQRLRWTHELHE
Sbjct: 1   MYQPKAVPSPSLVHNNSLVHGQHSDCGANTMDPINGGNSLNNNPSLASKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKVDKK 120
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKK DKK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKK 120

Query: 121 ETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLE--RQLQLRIEAQGKYLKKIIEEQQ 178
           E+GDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLE  RQLQLRIEAQGKYLKKIIEEQQ
Sbjct: 121 ESGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQ 180

Query: 179 RLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLD 238
           RLSGV+TE PGSG S P SGDNC E D KTDPATPAPTSE PL DKAAKE  PAKSLS+D
Sbjct: 181 RLSGVITEVPGSGVSVPVSGDNCLESD-KTDPATPAPTSEGPLLDKAAKETAPAKSLSID 239

Query: 239 ESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISS 298
           ESFSS +EPLTPDSGC+V+SP +SPKGERS+KKQRV +  AYAK EMVLTH ILESS+SS
Sbjct: 240 ESFSSHHEPLTPDSGCHVNSPDESPKGERSVKKQRVSIGAAYAKQEMVLTHQILESSLSS 299

Query: 299 SYQQPQNV------FDPSSRASVGKEDRPE 322
           S+ QP +V      FDP +  S+  ED+ E
Sbjct: 300 SFHQPHSVFLNRDQFDPQAGISISNEDQLE 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568528|ref|XP_002525238.1| transcription factor, putative [Ricinus communis] gi|223535535|gb|EEF37204.1| transcription factor, putative [Ricinus communis]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 273/336 (81%), Positives = 293/336 (87%), Gaps = 10/336 (2%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MYQ  SVPSSSLV  +SLVHGQHLDCG+S+MD +NG NSLNNNPSLASKQRLRWTHELHE
Sbjct: 1   MYQLKSVPSSSLVHKSSLVHGQHLDCGASRMDAINGENSLNNNPSLASKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKVDKK 120
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKK DKK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKK 120

Query: 121 ETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLE--RQLQLRIEAQGKYLKKIIEEQQ 178
           ETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLE  RQLQLRIEAQGKYLKKIIEEQQ
Sbjct: 121 ETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQ 180

Query: 179 RLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLD 238
           RLSGVL E PG+  +AP SGDNC E D KTDPATPAPTSESP+QDKAAKE  PAKSLS+D
Sbjct: 181 RLSGVLGEVPGAVAAAPVSGDNCPESDNKTDPATPAPTSESPIQDKAAKERAPAKSLSID 240

Query: 239 ESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISS 298
           ESFSS++EPLTPDS CNV SP++SPKGERSMKKQRV M T+Y K EMVLTH ILESS+ +
Sbjct: 241 ESFSSRHEPLTPDSRCNVGSPAESPKGERSMKKQRVCMGTSYGKSEMVLTHQILESSL-N 299

Query: 299 SYQQPQNV------FDPSSRASVGKEDRPE-VSGND 327
           SY QP ++      FDPSS  S G +D  E V G+D
Sbjct: 300 SYPQPHSLFLSREQFDPSSGLSTGNDDHIEKVPGSD 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124782|ref|XP_002329947.1| predicted protein [Populus trichocarpa] gi|222871969|gb|EEF09100.1| predicted protein [Populus trichocarpa]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/313 (80%), Positives = 271/313 (86%), Gaps = 9/313 (2%)

Query: 24  LDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRV 83
           LDC +  MDP+NGGNSLNNNP+LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRV
Sbjct: 3   LDCEAMTMDPINGGNSLNNNPNLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRV 62

Query: 84  MGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKVDKKETGDMLSSLDGSSGMQITEALKL 143
           MGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKVDKKETGD+LS+ DGSSGMQITEALKL
Sbjct: 63  MGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKVDKKETGDVLSNSDGSSGMQITEALKL 122

Query: 144 QMEVQKRLHEQLE--RQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNC 201
           QMEVQKRLHEQLE  RQLQLRIEAQGKYLKKIIEEQQRLSGVL + PGSG SAP SGDNC
Sbjct: 123 QMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLEDVPGSGVSAPVSGDNC 182

Query: 202 QEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQ 261
              D KTDPATPAPTSESPLQDK AKE  P KSLS+DESFSSQ+EPLTPDS CN  SP++
Sbjct: 183 PVSDNKTDPATPAPTSESPLQDKVAKECAPTKSLSIDESFSSQHEPLTPDSRCNTGSPAE 242

Query: 262 SPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISSSYQQPQNV------FDPSSRASV 315
           SP+GERS+KKQ V M  A+ KPEMVLTH ILESS+ +SY QP +       FDPSS  S+
Sbjct: 243 SPRGERSLKKQMVSMGVAFGKPEMVLTHQILESSL-NSYPQPHSAFLTREQFDPSSGLSM 301

Query: 316 GKEDRPEVSGNDL 328
           G ED+ EV G+DL
Sbjct: 302 GNEDQSEVLGSDL 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840891|emb|CAN66505.1| hypothetical protein VITISV_035498 [Vitis vinifera]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/300 (83%), Positives = 265/300 (88%), Gaps = 9/300 (3%)

Query: 31  MDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLT 90
           MDP+NGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLT
Sbjct: 1   MDPINGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLT 60

Query: 91  IYHVKSHLQKYRLAKYLPDSSSDGKKVDKKETGDMLSSLDGSSGMQITEALKLQMEVQKR 150
           IYHVKSHLQKYRLAKYLPDSSSDGKK DKKE+GDMLSSLDGSSGMQITEALKLQMEVQKR
Sbjct: 61  IYHVKSHLQKYRLAKYLPDSSSDGKKADKKESGDMLSSLDGSSGMQITEALKLQMEVQKR 120

Query: 151 LHEQLE--RQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKT 208
           LHEQLE  RQLQLRIEAQGKYLKKIIEEQQRLSGV+TE PGSG S P SGDNC E D KT
Sbjct: 121 LHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVITEVPGSGVSVPVSGDNCLESD-KT 179

Query: 209 DPATPAPTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERS 268
           DPATPAPTSE PL DKAAKE  PAKSLS+DESFSS +EPLTPDSGC+V+SP +SPKGERS
Sbjct: 180 DPATPAPTSEGPLLDKAAKETAPAKSLSIDESFSSHHEPLTPDSGCHVNSPXESPKGERS 239

Query: 269 MKKQRVDMETAYAKPEMVLTHPILESSISSSYQQPQNV------FDPSSRASVGKEDRPE 322
           +KKQRV +  AYAK EMVLTH ILESS+SSS+ QP +V      FDP +  S+  ED+ E
Sbjct: 240 VKKQRVSIGAAYAKQEMVLTHQILESSLSSSFHQPHSVFLNRDQFDPQAGISISNEDQLE 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638496|gb|ACU19557.1| unknown [Glycine max]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/310 (78%), Positives = 264/310 (85%), Gaps = 12/310 (3%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MY   +VPS+SL+  NSL HGQH+DCG S MDP +GGN L+NN +L SKQRLRWTHELHE
Sbjct: 1   MYHSKNVPSASLIGGNSLSHGQHIDCGGSTMDPGSGGNGLSNNSNLTSKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD-GKKVDK 119
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD GKK DK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADK 120

Query: 120 KETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLE--RQLQLRIEAQGKYLKKIIEEQ 177
           KETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLE  RQLQLRIEAQGKYLKKIIEEQ
Sbjct: 121 KETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 180

Query: 178 QRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSL 237
           QRLSGVL+EAPGSG  A   GD CQEPD KTDP+TP P       +KAAK+  PAKSLS+
Sbjct: 181 QRLSGVLSEAPGSGAVAVVPGDACQEPDNKTDPSTPDP-------EKAAKDRAPAKSLSI 233

Query: 238 DESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSIS 297
            ESFSS  EP+TPDSGC+V SP++SPKGERS KKQRV M+  Y+KPEMVL H ILESS+ 
Sbjct: 234 -ESFSSHPEPMTPDSGCHVGSPAESPKGERSAKKQRVTMDGVYSKPEMVLPHQILESSM- 291

Query: 298 SSYQQPQNVF 307
           SSYQQP  VF
Sbjct: 292 SSYQQPNTVF 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555797|ref|XP_003546216.1| PREDICTED: uncharacterized protein LOC100786925 isoform 1 [Glycine max] gi|356555799|ref|XP_003546217.1| PREDICTED: uncharacterized protein LOC100786925 isoform 2 [Glycine max]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/310 (78%), Positives = 264/310 (85%), Gaps = 12/310 (3%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MY   +VPS+SL+  NSL HGQH+DCG S MDP +GGN L+NN +L SKQRLRWTHELHE
Sbjct: 1   MYHSKNVPSASLIGGNSLSHGQHIDCGGSTMDPGSGGNGLSNNSNLTSKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD-GKKVDK 119
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD GKK DK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADK 120

Query: 120 KETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLE--RQLQLRIEAQGKYLKKIIEEQ 177
           KETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLE  RQLQLRIEAQGKYLKKIIEEQ
Sbjct: 121 KETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 180

Query: 178 QRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSL 237
           QRLSGVL+EAPGSG  A   GD CQEPD KTDP+TP P       +KAAK+  PAKSLS+
Sbjct: 181 QRLSGVLSEAPGSGAVAVVPGDACQEPDNKTDPSTPDP-------EKAAKDRAPAKSLSI 233

Query: 238 DESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSIS 297
            ESFSS  EP+TPDSGC+V SP++SPKGERS KKQRV M+  Y+KPEMVL H ILESS+ 
Sbjct: 234 -ESFSSHPEPMTPDSGCHVGSPAESPKGERSAKKQRVTMDGVYSKPEMVLPHQILESSM- 291

Query: 298 SSYQQPQNVF 307
           SSYQQP  VF
Sbjct: 292 SSYQQPNTVF 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089499|ref|XP_002308734.1| predicted protein [Populus trichocarpa] gi|222854710|gb|EEE92257.1| predicted protein [Populus trichocarpa]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/362 (73%), Positives = 288/362 (79%), Gaps = 36/362 (9%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MYQ  SVPSSS V  N LV+ Q+LDC    MDP+NGGN+LNNNP+LASKQRLRWTHELHE
Sbjct: 1   MYQLESVPSSSSVHKNLLVNDQYLDCDDMTMDPINGGNNLNNNPNLASKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKVDKK 120
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKK DKK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKK 120

Query: 121 ETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLE------------------------ 156
           ETGDM+S+LDGSSGMQITEALKLQMEVQKRLHEQLE                        
Sbjct: 121 ETGDMISNLDGSSGMQITEALKLQMEVQKRLHEQLEACFPCTRHPINCAIMCGDFYAHVS 180

Query: 157 ---RQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATP 213
              RQLQLRIEAQGKYLKKIIEEQQRLSGVL + PGSG +AP SGDNC E D KTDPATP
Sbjct: 181 LVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLEDVPGSGVTAPVSGDNCPESD-KTDPATP 239

Query: 214 APTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQR 273
           APTSESPLQDKAAKE  PAKSLS+DESFSSQ EPLTPDS CN  SP++SP+GERSMKKQR
Sbjct: 240 APTSESPLQDKAAKERAPAKSLSIDESFSSQPEPLTPDSRCNAGSPAESPRGERSMKKQR 299

Query: 274 VDMETAYAKPEMVLTHPILESSISSSYQQPQNV------FDPSSRASVGKEDRPE-VSGN 326
           V M   Y K EMVLTH ILESS+ +SY +P +       FDPSS  S+G ED+ E VSG+
Sbjct: 300 VSMGVTYGKQEMVLTHQILESSL-NSYPRPHSAFLGREQFDPSSGLSMGIEDQMEKVSGS 358

Query: 327 DL 328
           D+
Sbjct: 359 DV 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498370|gb|AFK37251.1| unknown [Lotus japonicus]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/339 (72%), Positives = 272/339 (80%), Gaps = 29/339 (8%)

Query: 1   MYQPN--SVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHEL 58
           MY P   +VPSS+L+ SNSLVHGQH+DCG S MDP NGGNSL+NN +L SKQRLRWTHEL
Sbjct: 1   MYHPKIQNVPSSTLIGSNSLVHGQHIDCGDSTMDPGNGGNSLSNNSNLTSKQRLRWTHEL 60

Query: 59  HERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD-GKKV 117
           HERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD GKK 
Sbjct: 61  HERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKA 120

Query: 118 DKKETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLE--RQLQLRIEAQGKYLKKIIE 175
           DKKETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLE  RQLQLRIEAQGKYLKKIIE
Sbjct: 121 DKKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIE 180

Query: 176 EQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSL 235
           EQQRLSGV +EAP          D C+EPD KTDPATP P       +KAAK+H PAKSL
Sbjct: 181 EQQRLSGVFSEAP---------ADVCREPDNKTDPATPDP-------EKAAKQHAPAKSL 224

Query: 236 SLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESS 295
           S+ ESFSS +EP+TPDS C+V SP+ SPK ERS KKQRV M+ AY+KP++VL H ILESS
Sbjct: 225 SI-ESFSSHHEPMTPDSACHVGSPADSPKEERSAKKQRVSMDGAYSKPDIVLPHQILESS 283

Query: 296 ISSSYQQPQNV------FDPSSRASVGKEDRPEVSGNDL 328
           +  SYQQP  V      FD S   S   E+  ++ G++L
Sbjct: 284 M-PSYQQPTTVFLTQEHFDSSLGISTRSEELEKIGGSNL 321

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448191|ref|XP_003594371.1| Two-component response regulator EHD1 [Medicago truncatula] gi|355483419|gb|AES64622.1| Two-component response regulator EHD1 [Medicago truncatula]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/320 (77%), Positives = 263/320 (82%), Gaps = 19/320 (5%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MY P +VP SSLV SN LVHGQH+D G S MDP +GGNSL NN +L SKQRLRWTHELHE
Sbjct: 1   MYHPTNVPDSSLVGSNPLVHGQHIDSGRSAMDPGSGGNSLANNSNLNSKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD-GKKVDK 119
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPD SSD GKK DK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDCSSDEGKKTDK 120

Query: 120 KETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLE--RQLQLRIEAQGKYLKKIIEEQ 177
           KETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLE  RQLQLRIEAQGKYLKKIIEEQ
Sbjct: 121 KETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 180

Query: 178 QRLSGVLTEAPGSGGSAPASGDNC-QEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLS 236
           QRLSGVL+EAPGSG SAP  GD   QE D KT+PATP P       +KAAKEH PAKSLS
Sbjct: 181 QRLSGVLSEAPGSGVSAPTPGDMFQQELDNKTEPATPDP-------EKAAKEHAPAKSLS 233

Query: 237 LDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSI 296
             ESFSS +EP+TPDSGC V SP+ SP GERS KKQRV +E AY K +MVL H ILESS+
Sbjct: 234 A-ESFSSHHEPMTPDSGCQVGSPADSPNGERSTKKQRVSVEGAYLKSDMVLPHQILESSM 292

Query: 297 SSSYQQP------QNVFDPS 310
             SYQQP      Q+ FDPS
Sbjct: 293 -PSYQQPNAIFLTQDHFDPS 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073354|gb|ACJ85036.1| unknown [Medicago truncatula]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/320 (76%), Positives = 262/320 (81%), Gaps = 19/320 (5%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MY P +VP SSLV SN LVHGQH+D G S MDP +GGNSL NN +L SKQRLRWTHELHE
Sbjct: 1   MYHPTNVPDSSLVGSNPLVHGQHIDSGRSAMDPGSGGNSLANNSNLNSKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD-GKKVDK 119
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY+PD SSD GKK DK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYVPDCSSDEGKKTDK 120

Query: 120 KETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLE--RQLQLRIEAQGKYLKKIIEEQ 177
           KETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLE  RQLQLRIEAQGKYLKKIIEEQ
Sbjct: 121 KETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 180

Query: 178 QRLSGVLTEAPGSGGSAPASGDNC-QEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLS 236
           QRLSGVL+EAPGSG SAP  GD   QE D KT+PATP P       +KAAKEH PAKSLS
Sbjct: 181 QRLSGVLSEAPGSGVSAPTPGDMFQQELDNKTEPATPDP-------EKAAKEHAPAKSLS 233

Query: 237 LDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSI 296
             ESF S +EP+TPDSGC V SP+ SP GERS KKQRV +E AY K +MVL H ILESS+
Sbjct: 234 A-ESFPSHHEPMTPDSGCQVGSPADSPNGERSTKKQRVSVEGAYLKSDMVLPHQILESSM 292

Query: 297 SSSYQQP------QNVFDPS 310
             SYQQP      Q+ FDPS
Sbjct: 293 -PSYQQPNAIFLTQDHFDPS 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.820	0.940	0.574	5.3e-72
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.503	0.403	0.433	1.5e-26
TAIR|locus:2100880	442	AT3G04450 [Arabidopsis thalian	0.567	0.420	0.359	6.7e-26
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.539	0.394	0.372	2.3e-25
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.176	0.172	0.637	6.3e-25
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.405	0.322	0.452	1.6e-24
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.390	0.433	0.430	4.8e-23
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.408	0.374	0.438	6.1e-23
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.390	0.429	0.430	1.6e-22
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.173	0.215	0.719	1.8e-22

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 165/287 (57%), Positives = 187/287 (65%)

Query:    47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY 106
             ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY
Sbjct:    13 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY 72

Query:   107 LPXXXXXXXXXXXXETXXXXXXXXXXXXXQITEALKLQMEVQKXXXXXXXXXXXXXXX-- 164
             LP            E+             QITEALKLQMEVQK                 
Sbjct:    73 LPDSSSEGKKTDKKESGDMLSGLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIE 132

Query:   165 AQGKYLKKIIEEQQRLSGVLTEXXXXXXXXXXXXDNCQEPDKKTDPATPAPTSESPLQDK 224
             AQGKYLKKIIEEQQRLSGVL E                     +DPATPAPTSESPLQDK
Sbjct:   133 AQGKYLKKIIEEQQRLSGVLGEPSAPVTGD-------------SDPATPAPTSESPLQDK 179

Query:   225 AAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPE 284
             + K+  P KSLS+DES SS  EPLTPDSGCN+ SP +S   ER  KK R+    A   P+
Sbjct:   180 SGKDCGPDKSLSVDESLSSYREPLTPDSGCNIGSPDESTGEERLSKKPRLVRGAAGYTPD 239

Query:   285 MVLTHPILESSISSSYQQPQNV--FDPSSRASVGKEDR-PEVSGNDL 328
             +V+ HPILES +++SY Q  +V  FD  S + +G E++  +VSG++L
Sbjct:   240 IVVGHPILESGLNTSYHQSDHVLAFDQPSTSLLGAEEQLDKVSGDNL 286

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 75/173 (43%), Positives = 90/173 (52%)

Query:    49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 108
             K R+RWT ELHE FV+AV  LGG +RATPKGVL++M V+GLTIYHVKSHLQKYR A+Y P
Sbjct:   225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTARYRP 284

Query:   109 XXXXXXXXXXXXETXXXXXXXXXXXXXQITEALKLQMEVQKXXXXXXXXXXXXXXXA--Q 166
                                         ITEAL+LQMEVQK                  Q
Sbjct:   285 EPSETGSPERKLTPLEHITSLDLKGGIGITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQ 344

Query:   167 GKYLKKIIEEQQRLSGVLTEXXXXXXXXXXXXDNCQEPDKKTDPATPAPTSES 219
             GKYL+ + E+Q   SG LT+            +  QE DKKT  +   P  E+
Sbjct:   345 GKYLQMMFEKQN--SG-LTKGTASTSDSAAKSE--QE-DKKTADSKEVPEEET 391

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2100880 AT3G04450 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 6.7e-26, P = 6.7e-26
 Identities = 73/203 (35%), Positives = 101/203 (49%)

Query:    48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107
             SKQR+RWT ELHE FV+A+ QLGG +RATPK VL+++   GLT+YHVKSHLQKYR A+Y 
Sbjct:   237 SKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRTARYK 296

Query:   108 PXXXXXXXX--XXXXETXXXXXXXXXXXXXQITEALKLQMEVQKXXXXXXXXXXXXXXXA 165
             P              +T             +ITEAL+LQM+VQK                
Sbjct:   297 PELSKDTEEPLVKNLKTIEDIKSLDLKTSIEITEALRLQMKVQKQLHEQLEIQRSLQLQI 356

Query:   166 --QGKYLKKIIEEQQRLSGVLTEXXXXXXXXXXXXDNCQEPDKKTDPATPAPTSESPLQD 223
               QG+YL+ +IE+QQ++     +                 P+   DP+ P+P    P   
Sbjct:   357 EEQGRYLQMMIEKQQKMQENKKDSTSSSSM----------PE--ADPSAPSPNLSQPFLH 404

Query:   224 KAAKEHVPAKSLSLDESFSSQNE 246
             KA     P+ +  L    S+ ++
Sbjct:   405 KATNSE-PSITQKLQNGSSTMDQ 426

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 2.3e-25, P = 2.3e-25
 Identities = 69/185 (37%), Positives = 95/185 (51%)

Query:    49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 108
             K R+RWT ELHE FV AV +L GP++ATPK V ++M V+GLTIYHVKSHLQKYRLAKY+P
Sbjct:   241 KSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRLAKYMP 300

Query:   109 XXXXXXXXXXXXETXXXXXXXXXXX----XXQITEALKLQMEVQKXXXXXXXXXXXXXXX 164
                         E                  Q+TEAL++QMEVQK               
Sbjct:   301 EKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLTEALRMQMEVQKQLHEQLEVQRVLQLR 360

Query:   165 AQ--GKYLKKIIEEQQRLSGVLTEXXXXXXXXXXXXDNCQEPDKKTDPATPAPTSESPLQ 222
              +   KYL+K++EEQ++    ++                 +   KT  ++P P    P +
Sbjct:   361 IEEHAKYLEKMLEEQRKTGRWISSSSQTVLSPSDDSIPDSQNMSKTKASSPQPPL--PAE 418

Query:   223 DKAAK 227
             +KA++
Sbjct:   419 NKASE 423

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
 Identities = 37/58 (63%), Positives = 51/58 (87%)

Query:    48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 105
             +K RL+WT +LH +F++AV QLGGP++ATPKG+++VM + GLT+YH+KSHLQKYRL K
Sbjct:    33 AKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRLGK 90

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 62/137 (45%), Positives = 79/137 (57%)

Query:    48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107
             SKQR+RWT ELHE FV+AV QLGG +RATPK VL+++   GLTIYHVKSHLQKYR A+Y 
Sbjct:   230 SKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYK 289

Query:   108 PXXXXXXXXXXXXETXXXXXXXXXX--XXXQITEALKLQMEVQKXXXXXXXXXXXXXXXA 165
             P            +                +IT+AL+LQMEVQK                
Sbjct:   290 PETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEIQRSLQLQI 349

Query:   166 --QGKYLKKIIEEQQRL 180
               QG+YL+ + E+QQ++
Sbjct:   350 EKQGRYLQMMFEKQQKI 366

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 62/144 (43%), Positives = 78/144 (54%)

Query:    49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY-- 106
             K RLRWT ELHERFVDAV QLGGPD+ATPK ++R MGV+GLT+YH+KSHLQK+RL +   
Sbjct:    37 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQSC 96

Query:   107 ---LPXXXXXXXXXXXXETXXXXXXXXXXXXX------QITEALKLQMEVQKXXXXXXXX 157
                +             +T                   Q+TEAL+ QMEVQ+        
Sbjct:    97 KESIDNSKDVSCVAESQDTGSSSTSSLRLAAQEQNESYQVTEALRAQMEVQRRLHEQLEY 156

Query:   158 XXXXXXX-----AQGKYLKKIIEE 176
                         AQGKYL+ I+E+
Sbjct:   157 TQVQRRLQLRIEAQGKYLQSILEK 180

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 61/139 (43%), Positives = 76/139 (54%)

Query:    49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK--Y 106
             K RLRWT ELHERFVDAVAQLGGPD+ATPK ++RVMGV+GLT+YH+KSHLQK+RL K  +
Sbjct:    34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93

Query:   107 LPXXXXXXXXXXXXETXXXXXXXXXXXXXQITEALKLQMEVQKXXXXXXXXXXXXXXX-- 164
                                                ++QMEVQ+                 
Sbjct:    94 KEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIE 153

Query:   165 AQGKYLKKIIEEQ-QRLSG 182
             AQGKY++ I+E   Q L+G
Sbjct:   154 AQGKYMQSILERACQTLAG 172

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 62/144 (43%), Positives = 77/144 (53%)

Query:    49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 108
             K RLRWT ELHERFVDAV QLGGPD+ATPK ++R MGV+GLT+YH+KSHLQK+RL +   
Sbjct:    41 KPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQAG 100

Query:   109 XXXXXXXXXXX-----XETXXXXXXXXXXXXX------QITEALKLQMEVQKXXXXXXXX 157
                              +T                   Q+TEAL+ QMEVQ+        
Sbjct:   101 KESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQMEVQRRLHDQLEY 160

Query:   158 XXXXXXX-----AQGKYLKKIIEE 176
                         AQGKYL+ I+E+
Sbjct:   161 GQVQRRLQLRIEAQGKYLQSILEK 184

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 41/57 (71%), Positives = 52/57 (91%)

Query:    49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 105
             K RLRWT +LH+RFVDAVA+LGG D+ATPK VL++MG++GLT+YH+KSHLQKYRL +
Sbjct:     7 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRLGQ 63

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1370033 hypothetical protein (314 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	2e-24
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	1e-20
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	5e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-08

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 93.6 bits (233), Expect = 2e-24
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 49  KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 105
           K R+ WT +LH+RF+ AV +LGGPD ATPK +L +M V GLT   V SHLQKYRL +
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 83.1 bits (206), Expect = 1e-20
 Identities = 36/51 (70%), Positives = 44/51 (86%), Gaps = 2/51 (3%)

Query: 134 GMQITEALKLQMEVQKRLHEQLE--RQLQLRIEAQGKYLKKIIEEQQRLSG 182
           GMQITEAL+LQMEVQ+RLHEQLE  R LQ+RIEAQGKYL++I+E+ Q+   
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 57.1 bits (137), Expect = 5e-09
 Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 49  KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102
           K ++ WT ELH RFV AV QLG  ++A P  +L +MGVQ LT +++ SHLQKYR
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102
           R  WT E  E  ++AV + G  +      + + +   G T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
PLN03162	526	golden-2 like transcription factor; Provisional	99.89
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.87
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.85
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.42
smart00426	68	TEA TEA domain.	89.73

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.89  E-value=6.3e-24  Score=207.80  Aligned_cols=63  Identities=48%  Similarity=0.699  Sum_probs=59.2

Q ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhhccCC
Q 020267           45 SLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP  108 (328)
Q Consensus        45 ~~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~p  108 (328)
                      ...+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.+++.
T Consensus       231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l  293 (526)
T PLN03162        231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL  293 (526)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence            34789999999999999999999999 7999999999999999999999999999999987653

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.87  E-value=1.3e-22  Score=150.20  Aligned_cols=48  Identities=75%  Similarity=1.070  Sum_probs=45.9

Q ss_pred             CCChHHHHHHHHHHhhhhHHHHH--HHHhHHHHHHhHHHHHHHHHHHHHc
Q 020267          134 GMQITEALKLQMEVQKRLHEQLE--RQLQLRIEAQGKYLKKIIEEQQRLS  181 (328)
Q Consensus       134 g~qItEALrlQmEVQrrLhEQLE--R~LQLRIEAQGKYLqsiLEkqq~l~  181 (328)
                      |++|+|||++|||||||||||||  |+||+|||||||||++|||+|++..
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~   50 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKAL   50 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            68999999999999999999999  9999999999999999999998754

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.85  E-value=5.7e-22  Score=148.07  Aligned_cols=56  Identities=61%  Similarity=0.981  Sum_probs=54.2

Q ss_pred             CCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhh
Q 020267           49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA  104 (328)
Q Consensus        49 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~  104 (328)
                      |+|++||+|+|++|++||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.42  E-value=0.00018  Score=50.64  Aligned_cols=48  Identities=29%  Similarity=0.391  Sum_probs=40.5

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhh
Q 020267           51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR  102 (328)
Q Consensus        51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR  102 (328)
                      |..||++-+..|++||.++|.-   .-+.|-+.|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            5689999999999999999932   4568888888 7899999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=89.73  E-value=0.42  Score=38.08  Aligned_cols=46  Identities=26%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCCcc-chhhh---cC-----------CCCc--cHHHHHHHhhh
Q 020267           53 RWTHELHERFVDAVAQLGGPDRATPK-GVLRV---MG-----------VQGL--TIYHVKSHLQK  100 (328)
Q Consensus        53 rWT~ELH~rFV~AV~qLGG~dkAtPK-~IL~l---M~-----------V~GL--T~~hVKSHLQK  100 (328)
                      .|.++|-..|++|+..+-  ...+=| .+...   .|           ..|.  |..+|.||||.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999998874  222222 22111   11           1443  67789999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		1e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 49  KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104
           K R+ WTHELH +F+ AV  LG  +RA PK +L +M V  LT  +V SHLQK+R+A
Sbjct: 5   KPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	7e-25
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 94.2 bits (234), Expect = 7e-25
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 45  SLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104
           +   K R+ WTHELH +F+ AV  LG  +RA PK +L +M V  LT  +V SHLQK+R+A
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 105 K 105
            
Sbjct: 60  L 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 56/326 (17%), Positives = 93/326 (28%), Gaps = 77/326 (23%)

Query: 37  GNSLNNN-PSLAS--KQRLRWTHELHERFVDAVAQL-GGPDRATPKGVLRVMGVQGLTIY 92
              L  N   L S  K   R    +   +++   +L           V R+     L   
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--- 140

Query: 93  HVKSHLQKYRLAKYL-----PDSSSDGKKV-------DKKETGDMLSSLDG-----SSGM 135
             +  L + R AK +       S   GK           K    +   +D      +   
Sbjct: 141 --RQALLELRPAKNVLIDGVLGS---GKTWVALDVCLSYK----VQCKMDFKIFWLNLKN 191

Query: 136 QITEALKLQMEVQKRLHEQLERQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAP 195
             +    L+M   ++L  Q++     R +       +I   Q  L  +L   P       
Sbjct: 192 CNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-----E 244

Query: 196 AS---GDNCQEPDKKTDPA---------TPAPTSESPLQDKAAKEHVPAKSLSLDESFSS 243
                  N Q  + K   A         T   T    + D  +        +SLD     
Sbjct: 245 NCLLVLLNVQ--NAKAWNAFNLSCKILLT---TRFKQVTDFLSAATT--THISLDH---- 293

Query: 244 QNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISSSYQQP 303
            +  LTPD   ++               + +D        E++ T+P   S I+ S +  
Sbjct: 294 HSMTLTPDEVKSLLL-------------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 304 QNVFDPSSRASVGKEDRP-EVSGNDL 328
              +D     +  K     E S N L
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVL 366

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	94.52
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	92.7
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	92.38
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	91.19
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	90.46
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	89.0
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	87.99
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	86.38
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	85.73
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	84.51
2ba2_A	85	D12_ORF131, hypothetical UPF0134 protein MPN010; D	82.49
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	82.14
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	81.33
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	80.8

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=3.7e-29  Score=190.54  Aligned_cols=61  Identities=49%  Similarity=0.750  Sum_probs=57.5

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhhccC
Q 020267           46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL  107 (328)
Q Consensus        46 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~  107 (328)
                      ..+|+||+||+|||++||+||++|| .++||||.||++|+|+|||++||+|||||||+...+
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999 799999999999999999999999999999997543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=94.52  E-value=0.061  Score=41.46  Aligned_cols=52  Identities=13%  Similarity=0.133  Sum_probs=41.8

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhh
Q 020267           46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL  103 (328)
Q Consensus        46 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl  103 (328)
                      .....+-.||++=+.+|++||..+|+-+.    .|-++|+  +=|..+++.|.++|-+
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~----~IA~~v~--~RT~~qcr~r~~~~~i   64 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEMYKDDWN----KVSEHVG--SRTQDECILHFLRLPI   64 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHHSSSCHH----HHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhCCCHH----HHHHHcC--CCCHHHHHHHHHHhcc
Confidence            33445778999999999999999996543    6777764  7999999999988743

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.70  E-value=0.077  Score=39.46  Aligned_cols=53  Identities=17%  Similarity=0.258  Sum_probs=39.4

Q ss_pred             CCcccCCHHHHHHHHHHHHHhCCCCCCCc---cchhhhcCCCCccHHHHHHHhhhhhhh
Q 020267           49 KQRLRWTHELHERFVDAVAQLGGPDRATP---KGVLRVMGVQGLTIYHVKSHLQKYRLA  104 (328)
Q Consensus        49 KpRlrWT~ELH~rFV~AV~qLGG~dkAtP---K~IL~lM~V~GLT~~hVKSHLQKYRl~  104 (328)
                      ..+-.||+|=+++|++||..+|. +...|   +.|-+.|  +|=|..+|+.|.|+|-..
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence            34557999999999999999992 22111   2344444  689999999999999654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=92.38  E-value=0.18  Score=37.41  Aligned_cols=52  Identities=27%  Similarity=0.388  Sum_probs=40.7

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhhc
Q 020267           48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK  105 (328)
Q Consensus        48 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k  105 (328)
                      ...+-.||+|-++.|+++|..+|--    =+.|-+.  ++|=|..+|+.|.++|-..+
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGRR----WTKISKL--IGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCSC----HHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence            3445689999999999999999942    2355554  47899999999999995543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=91.19  E-value=0.29  Score=35.16  Aligned_cols=50  Identities=26%  Similarity=0.272  Sum_probs=40.0

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhhhh
Q 020267           48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL  103 (328)
Q Consensus        48 ~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl  103 (328)
                      .-.|-.||+|-.++|++||..+| +-+.    .|-+.|  +|=|..+++.|-++|-+
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~----~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCGFGNWQ----DVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTCTTCHH----HHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCcHH----HHHHHh--CCCCHHHHHHHHHHHcc
Confidence            34456799999999999999999 4443    566666  67899999999988854

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=90.46  E-value=0.23  Score=46.08  Aligned_cols=52  Identities=25%  Similarity=0.374  Sum_probs=42.9

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhh
Q 020267           46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL  103 (328)
Q Consensus        46 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl  103 (328)
                      ...+..-+||++=++.|++|+..+|--+.    .|-++  |++=|..+|+.|..+||.
T Consensus       128 ~~~k~s~~WTeEE~~lFleAl~kYGKDW~----~IAk~--VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          128 VIQKCNARWTTEEQLLAVQAIRKYGRDFQ----AISDV--IGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHSSCHH----HHHHH--HSSCCHHHHHHHHHHTTT
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHCcCHH----HHHHH--cCCCCHHHHHHHHHHHHH
Confidence            34577889999999999999999994333    56666  567999999999999973

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=89.00  E-value=0.43  Score=47.96  Aligned_cols=52  Identities=27%  Similarity=0.387  Sum_probs=43.0

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhh
Q 020267           47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA  104 (328)
Q Consensus        47 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~  104 (328)
                      ..+..-+||.+=|..|++||.+.|--+.    .|-++++-  =|..+|++|.++||..
T Consensus       376 ~~~~~~~WT~eE~~~f~~al~~yGkdw~----~IA~~VgT--KT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          376 IQKCNARWTTEEQLLAVQAIRKYGRDFQ----AISDVIGN--KSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHHTTCHH----HHHHHHSS--CCHHHHHHHHHHTTTT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHCcCHH----HHHHHhCC--CCHHHHHHHHHHHHHH
Confidence            3466789999999999999999995443    67777665  6999999999999753

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=87.99  E-value=1.4  Score=32.17  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=43.3

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhhh
Q 020267           46 LASKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR  102 (328)
Q Consensus        46 ~~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR  102 (328)
                      ..++.|-.||+|--+..+++|.++| |-+.    .|.+.|+..|=|-.+++.+...|-
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~----~Ia~~~~~~~Rt~~qcr~Rw~~~l   58 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWS----KILLHYKFNNRTSVMLKDRWRTMK   58 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHH----HHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHH----HHHHHcCcCCCCHHHHHHHHHHHc
Confidence            4577888999999999999999999 4443    778888655889999998877664

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=86.38  E-value=0.71  Score=36.68  Aligned_cols=57  Identities=25%  Similarity=0.278  Sum_probs=37.1

Q ss_pred             CCcccCCHHHHHHHHHHHHHhCCCCCCCccchhh---hc-C-----------C--CCccHHHHHHHhhhhhhhccC
Q 020267           49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLR---VM-G-----------V--QGLTIYHVKSHLQKYRLAKYL  107 (328)
Q Consensus        49 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~---lM-~-----------V--~GLT~~hVKSHLQKYRl~k~~  107 (328)
                      +..-.|.++|-..|++|+..+-=..+.  |-+|.   .| |           .  .-=|+.+|.||||.-|-.+..
T Consensus         4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~   77 (82)
T 2hzd_A            4 DAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR   77 (82)
T ss_dssp             GGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred             CcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence            445689999999999999987511122  23331   11 1           1  233777899999998766543

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=85.73  E-value=1.3  Score=31.59  Aligned_cols=48  Identities=21%  Similarity=0.282  Sum_probs=37.6

Q ss_pred             cccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhhhh
Q 020267           51 RLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL  103 (328)
Q Consensus        51 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl  103 (328)
                      +-.||++-.+++++||.++| +-+.    .|-+.|+. |=|..+++.|-++|-+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~~W~----~IA~~~~~-~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLGNWA----DIADYVGN-ARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTTCHH----HHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHH----HHHHHHCC-CCCHHHHHHHHHHHcc
Confidence            44699999999999999999 5444    55555542 6899999999888754

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=84.51  E-value=1.3  Score=33.67  Aligned_cols=47  Identities=15%  Similarity=0.332  Sum_probs=37.0

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCCCCccc---hhhhcCCCCccHHHHHHHhhhhhhh
Q 020267           52 LRWTHELHERFVDAVAQLGGPDRATPKG---VLRVMGVQGLTIYHVKSHLQKYRLA  104 (328)
Q Consensus        52 lrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~GLT~~hVKSHLQKYRl~  104 (328)
                      -.||.|=+.+|+.|+..++   .-||.+   |-+.|   |=|..+|+.|-+++.-.
T Consensus         9 ~~WT~eE~k~fe~al~~~p---~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            9 PEWTEEDLSQLTRSMVKFP---GGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence            3699999999999999998   335665   44554   68999999998887543

>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1

Probab=82.49  E-value=2.5  Score=33.94  Aligned_cols=45  Identities=31%  Similarity=0.422  Sum_probs=34.5

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHhHHHHHHhHHHHHHHHHHHHHcC
Q 020267          137 ITEALKLQMEVQKRLHEQLERQLQLRIEAQGKYLKKIIEEQQRLSG  182 (328)
Q Consensus       137 ItEALrlQmEVQrrLhEQLER~LQLRIEAQGKYLqsiLEkqq~l~g  182 (328)
                      |.+.|..|-|-=+.--||| +.||+-+.|||+-|+.||+.-+.++.
T Consensus        34 ie~~~~~QgEqI~~qGeqI-keLq~eqkaQg~tl~lil~tL~~~nk   78 (85)
T 2ba2_A           34 VMESFAVQNQNIDAQGEQI-KELQVEQKAQGKTLQLILEALQGINK   78 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778887776554445555 89999999999999999987665543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=82.14  E-value=1.7  Score=31.93  Aligned_cols=48  Identities=19%  Similarity=0.246  Sum_probs=37.1

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhh
Q 020267           48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQ   99 (328)
Q Consensus        48 ~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQ   99 (328)
                      .+.|-.||+|--++.+++|.++| |-+.    .|.+.+.+.|=|-.+++-.-.
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~----~Ia~~~~~~~Rt~~qcr~Rw~   56 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWA----AISKNYPFVNRTAVMIKDRWR   56 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHH----HHHHHSCCSSCCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchH----HHHhhcCCCCCCHHHHHHHHH
Confidence            34566899999999999999999 3333    688888878888888875543

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=81.33  E-value=2  Score=32.68  Aligned_cols=49  Identities=12%  Similarity=0.098  Sum_probs=38.0

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcC-CCCccHHHHHHHhhhhh
Q 020267           51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKYR  102 (328)
Q Consensus        51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKYR  102 (328)
                      +-.||.+=...|++||..+|   +-+|..--++-. |||=|..+|+.|.+.+.
T Consensus        18 ~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~   67 (73)
T 2cqr_A           18 EEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLV   67 (73)
T ss_dssp             SCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            44699999999999999998   236665443332 57999999999988764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=80.80  E-value=2.8  Score=29.65  Aligned_cols=48  Identities=23%  Similarity=0.258  Sum_probs=37.6

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267           48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY  101 (328)
Q Consensus        48 ~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY  101 (328)
                      ...|-.||+|=.++++++|.++| +-+    ..|-+.|  +|=|-.+++.|-.+|
T Consensus         5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~   53 (60)
T 2d9a_A            5 SSGKVKWTHEEDEQLRALVRQFGQQDW----KFLASHF--PNRTDQQCQYRWLRV   53 (60)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHTCTTCH----HHHHHHC--SSSCHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCH----HHHHHHc--cCCCHHHHHHHHHHH
Confidence            45677899999999999999999 333    3555554  678999998887766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	2e-23

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.6 bits (222), Expect = 2e-23
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 45  SLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104
           +   K R+ WTHELH +F+ AV  LG  +RA PK +L +M V  LT  +V SHLQK+R+A
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 105 K 105
            
Sbjct: 60  L 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	94.32
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	91.64
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	88.81
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	85.14
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	82.17

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1e-26  Score=174.93  Aligned_cols=61  Identities=49%  Similarity=0.742  Sum_probs=57.2

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhhccC
Q 020267           46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL  107 (328)
Q Consensus        46 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~  107 (328)
                      ..+|+|++||+|||++||+||++||+ ++||||.|+++|+|+|||+.||+|||||||+...+
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999985 89999999999999999999999999999997643

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.018  Score=40.18  Aligned_cols=48  Identities=25%  Similarity=0.394  Sum_probs=39.2

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhh
Q 020267           51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA  104 (328)
Q Consensus        51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~  104 (328)
                      ..+||+|=++.|++||..+|.-+.    .|-++|  ++=|..+|++|.++|...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~----~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWT----KISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHH----HHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHH----HHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            468999999999999999995333    565555  578999999999998654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.078  Score=35.43  Aligned_cols=43  Identities=28%  Similarity=0.370  Sum_probs=35.2

Q ss_pred             cCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267           53 RWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY  101 (328)
Q Consensus        53 rWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY  101 (328)
                      .||.+-..+|++||..+| |-.    +.|-+.|+  |=|..+++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW----~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNW----QDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCH----HHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccH----HHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999999 323    35666665  67999999999887

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.81  E-value=0.56  Score=32.73  Aligned_cols=47  Identities=11%  Similarity=0.034  Sum_probs=37.0

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhh
Q 020267           47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQ   99 (328)
Q Consensus        47 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQ   99 (328)
                      .++..-.||++=+..|++||.+.|.-+.    .|-++  ++|=|..+|+.|-.
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G~~w~----~Ia~~--~~~rt~~q~~~~yy   59 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHPKNFG----LIASF--LERKTVAECVLYYY   59 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTTSCSS----SHHHH--TTTSCHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHCCcHH----HHHHH--cCCCCHHHHHHHHH
Confidence            3455567999999999999999995444    46555  57899999999853

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.14  E-value=0.46  Score=32.86  Aligned_cols=48  Identities=27%  Similarity=0.408  Sum_probs=38.2

Q ss_pred             CCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhh
Q 020267           49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR  102 (328)
Q Consensus        49 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR  102 (328)
                      |.+-+||++=...|.+|+...|.-+    ..|-++|  +|=|..+|+.|-.+|+
T Consensus         3 k~~~~WT~eE~~~f~~~~~~~G~~w----~~Ia~~~--~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           3 KCNARWTTEEQLLAVQAIRKYGRDF----QAISDVI--GNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSCH----HHHHHHH--SSCCHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCchH----HHHHHHc--CCCCHHHHHHHHHHHH
Confidence            4556799999999999999999432    2555554  6899999999988774

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.17  E-value=0.75  Score=30.52  Aligned_cols=45  Identities=24%  Similarity=0.302  Sum_probs=35.8

Q ss_pred             cccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267           51 RLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY  101 (328)
Q Consensus        51 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY  101 (328)
                      |-+||++=.++.+++|.+.| |-+.    .|-+.|  +|=|-.+++.|-++|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~----~Ia~~~--~~Rt~~qcr~Rw~~~   46 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWK----VIANYL--PNRTDVQCQHRWQKV   46 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHH----HHHHTS--TTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHH----HHHHHH--CCCCHHHHHHHHHhh
Confidence            45799999999999999999 3333    566666  588999999887776