Citrus Sinensis ID: 020288

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MVFSSVPVYLDPPNWHHQQPNHQQGAGSENPHQLPPIPSAPHHVVGVGGAPGGAGSIRPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSSLPPEIIGHLQQQCNTPHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGVGSSHSTDHVGFQIGSNSSMSSSAILSAGGGVQQFTFFEPPNTGLYSFQAEGIEAPSSLVVASNPRVSEQAPAKMEDHHQELNLSRPFFGISENNQYWSGNNWTDLSALNNSTSTNHLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccEEEccccccccHHHHHccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccEEEccccccccccccHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvfssvpvyldppnwhhqqpnhqqgagsenphqlppipsaphhvvgvggapggagsirpgsmadrarlakiphtevplkcprcdstntkfcyfnnyslsqprhFCKACRRYwtrggalrnvpvgggcrrnkksksssssskspanntEKLQqmgnsnstsslppeIIGHLQqqcntphqiplmpslhnlsqynmgsiglnfggigassgvgsshstdhvgfqigsnssmsSSAILsagggvqqftffeppntglysfqaegieapsslvvasnprvseqapakmedhhqelnlsrpffgisennqywsgnnwtdlsalnnststnhll
Flexible Loop (DISEMBL)
MVFSSVPVYLDPPNWHHQQPNHQQGAGSENPHQLPPIPSAPHHVVGVGGAPGGAGSIRPGSMADRARLAkiphtevplkcprcdSTNTKFCYFnnyslsqprHFCKACRRYWTRggalrnvpvgggcrrnkksksssssskspannTEKLQQMGNSNSTSSLPPEIIGHLQQQCNTPHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGVGSSHSTDHVGFQIGSNSSMSSSAILSAGGGVQQFTFFEPPNTGLYSFQAEGIEAPSSLVVASNPRVSEQAPAKMEDHHQELNLSRPFFGISENNQYWSGNNWTDlsalnnststnhll
Low Complexity Region (SEG)
MVFSSVPVYLDppnwhhqqpnhqqGAGSENPHQLPPIpsaphhvvgvggapggagsIRPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNkkskssssssksPANNTEKLQQMGNSNSTSSLPPEIIGHLQQQCNTPHQIPLMPSLHNLSQYNMGSIGLNFggigassgvgsshsTDHVGFQigsnssmsssailsagggVQQFTFFEPPNTGLYSFQAEGIEAPSSLVVASNPRVSEQAPAKMEDHHQELNLSRPFFGISENNQYWSGNNWTDLSALNNSTSTNHLL
Disordered region (IsUnstruct)
*********************************************************************KIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGG*****************************************************QIPLMPSLHNLSQYNMGSIGLNFGGIG*******************************AGGGVQQFTFFEPPNTGLYSFQA************************************PFFGISENNQYWSGNNWTDL*************
Disordered Region (DISOPRED)
*VFSSVPVY***********************************************************************PRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNV************************************************************************************************************************************************************************************ENNQYWSGNNWTDLS************
Disordered Region (DISEMBL)
MVFSSVPVYLDPPNWHH**************HQLPPIPSAPHHVVGVGGAPGGAGSIRPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGG***********************************SLPPEIIGHLQQQCNTPHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGVGSSHSTDHVGFQIGSNSSMSSSAILSAGGGVQQFTFFEPPNTGLYSFQAEGIEAPSSLVVASNPRVSEQAPAKMEDHHQELNLSRPFFGISENNQYWSGNNWTDLSALNNSTSTNHLL
Disordered Region (DISPRO)
***SSVPVY****NW************************************************************VPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGG*C*******************************************QQQCNTPHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGVGSSHSTDHVGFQIGSNSSMSSSAILSAGGGVQQFTFFEPPNTGLYSFQAEGIE*********NPRVSEQAPAKMEDHHQELNLSRPFFGISENNQYWSGNNWTD**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFSSVPVYLDPPNWHHQQPNHQQGAGSENPHQLPPIPSAPHHVVGVGGAPGGAGSIRPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSSLPPEIIGHLQQQCNTPHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGVGSSHSTDHVGFQIGSNSSMSSSAILSAGGGVQQFTFFEPPNTGLYSFQAEGIEAPSSLVVASNPRVSEQAPAKMEDHHQELNLSRPFFGISENNQYWSGNNWTDLSALNNSTSTNHLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q8L9V6	331	Dof zinc finger protein D	yes	no	0.795	0.788	0.419	1e-50
Q9ZV33	340	Dof zinc finger protein D	no	no	0.896	0.864	0.443	5e-49
Q9M2U1	323	Dof zinc finger protein D	no	no	0.902	0.916	0.392	1e-44
O80928	330	Dof zinc finger protein D	no	no	0.408	0.406	0.579	7e-38
Q9LZ56	399	Dof zinc finger protein D	no	no	0.231	0.190	0.881	5e-37
Q84TE9	257	Dof zinc finger protein D	no	no	0.201	0.256	0.757	2e-28
Q9LSL6	316	Dof zinc finger protein D	no	no	0.277	0.287	0.538	3e-27
Q8LDR0	307	Dof zinc finger protein D	no	no	0.256	0.273	0.625	1e-26
O24463	328	Dof zinc finger protein P	N/A	no	0.189	0.189	0.75	4e-26
Q8LE43	288	Dof zinc finger protein D	no	no	0.426	0.486	0.452	1e-25

>sp|Q8L9V6|DOF11_ARATH Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1 PE=1 SV=2

 Score =  200 bits (509), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/315 (41%), Positives = 176/315 (55%), Gaps = 54/315 (17%)

Query: 32  HQLPPIPSAP----HHVVGVGGAPGGAGSIRPGSMADRARLAKIPHTEVPLKCPRCDSTN 87
           HQLPP+ + P    HHV    G P   G    GSMA+RAR A IP    PLKCPRCDS+N
Sbjct: 31  HQLPPLQANPNPNHHHVATSAGLPSRMG----GSMAERARQANIPPLAGPLKCPRCDSSN 86

Query: 88  TKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKSKSSSSSSKSPANNT 147
           TKFCY+NNY+L+QPRHFCK CRRYWT+GGALRNVPVGGGCRRN K   + +   S +++ 
Sbjct: 87  TKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKNGNLKSSSSSSK 146

Query: 148 EKLQQMGNSNSTSSLPPEIIGHLQQQCNTPHQIPLMPSLHNLSQYNMGSIGLNFG---GI 204
           +      N+ S SS           Q  T HQ P  P+L+NL+Q  +G IGLN     G 
Sbjct: 147 QSSSV--NAQSPSS----------GQLRTNHQFPFSPTLYNLTQ--LGGIGLNLAATNGN 192

Query: 205 GASSGVGSSHSTDHVGFQIGSNSSM--------------SSSAILSAGGGVQQFTFFEPP 250
             +  +GSS     +GF  G N+S               + + ++++ G +  F  F+ P
Sbjct: 193 NQAHQIGSSLMMSDLGFLHGRNTSTPMTGNIHENNNNNNNENNLMASVGSLSPFALFD-P 251

Query: 251 NTGLYSFQAE-------GIEAPSSLVVASNPRVSEQAPAKMEDHHQELNLSRPFFGIS-- 301
            TGLY+FQ +       GI   S+ +V S  RV +  P KME+     NLSRP  G++  
Sbjct: 252 TTGLYAFQNDGNIGNNVGISGSSTSMVDS--RVYQTPPVKMEEQPNLANLSRPVSGLTSP 309

Query: 302 --ENNQY-WSGNNWT 313
             + NQY W G++++
Sbjct: 310 GNQTNQYFWPGSDFS 324

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV33|DOF22_ARATH Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana GN=DOF2.2 PE=2 SV=2

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 150/338 (44%), Positives = 190/338 (56%), Gaps = 44/338 (13%)

Query: 1   MVFSSVPVYLDPP-NW-----------HHQ-QPNHQQGAGSEN--PHQLPPIPSAPHHVV 45
           MVFSSV  +LDPP NW           HHQ Q N    +G      H  P  P+  HH V
Sbjct: 1   MVFSSVSSFLDPPINWPQSANPNNHPHHHQLQENGSLVSGHHQVLSHHFPQNPNPNHHHV 60

Query: 46  GVGGAPGGAGSIRPGSMADRARLAKIPHT-EVPLKCPRCDSTNTKFCYFNNYSLSQPRHF 104
               A     S   G  A+RARLAK     E  LKCPRCDS NTKFCYFNNY+L+QPRHF
Sbjct: 61  ETAAATTVDPSSLNGQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHF 120

Query: 105 CKACRRYWTRGGALRNVPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSSLPP 164
           CKACRRYWTRGGALRNVPVGGGCRRNKK KS +S S S + N +    +   N+TS   P
Sbjct: 121 CKACRRYWTRGGALRNVPVGGGCRRNKKGKSGNSKSSSSSQNKQSTSMV---NATS---P 174

Query: 165 EIIGHLQQQCNTPHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGVG---SSHSTDHVGF 221
               ++Q Q N+  Q P +P+L NL+Q  +G IGLN   I  ++G     SS   + +GF
Sbjct: 175 TNTSNVQLQTNS--QFPFLPTLQNLTQ--LGGIGLNLAAINGNNGGNGNTSSSFLNDLGF 230

Query: 222 QIGSNSS------MSSSAILSAGGGVQQFTFFEPPNTGLYSFQAEGIEAPSSLVVASNPR 275
             G N+S       + + ++++ G    F  F+    GLY+F  E     SS+      R
Sbjct: 231 FHGGNTSGPVMGNNNENNLMTSLGSSSHFALFD-RTMGLYNFPNEVNMGLSSIGAT---R 286

Query: 276 VSEQAPAKMEDHHQELNLSRPFFGIS----ENNQYWSG 309
           VS+ A  KMED+H   N+SRP  G++    ++NQYW+G
Sbjct: 287 VSQTAQVKMEDNHLG-NISRPVSGLTSPGNQSNQYWTG 323

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 138/352 (39%), Positives = 174/352 (49%), Gaps = 56/352 (15%)

Query: 1   MVFSSVPV-YLDPPNWHHQQPNHQQG--AGSENPHQ-LPPIPSAPHHVVGVGGAPGGAGS 56
           MVFSS+PV   D  NW  Q   HQ       +NP+  L  + S P   V       G+  
Sbjct: 1   MVFSSLPVNQFDSQNWQQQGNQHQLECVTTDQNPNNYLRQLSSPPTSQVA------GSSQ 54

Query: 57  IRPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGG 116
            R  SM +RAR+AK+P  E  L CPRCDSTNTKFCYFNNYSL+QPRHFCK CRRYWTRGG
Sbjct: 55  ARVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGG 114

Query: 117 ALRNVPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSSLPPEIIGHLQQ-QCN 175
           +LRNVPVGGG RRNK+SKS S S+   + +         S  + S P +   + Q  + N
Sbjct: 115 SLRNVPVGGGFRRNKRSKSRSKSTVVVSTDNTTSTSSLTSRPSYSNPSKFHSYGQIPEFN 174

Query: 176 TPHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGVGSSHSTDHVGFQIGSNSSMSSS-AI 234
           +   +P++P L +L  YN  + GL+FGG   S+ +                S MSSS  I
Sbjct: 175 S--NLPILPPLQSLGDYNSSNTGLDFGGTQISNMI----------------SGMSSSGGI 216

Query: 235 LSA-----GGGVQQFTF------FEPPNTGLYSFQAEGIEAPSSLVVASNPRVSEQAPAK 283
           L A         QQF F          +  LY     G+ A  +     N +  E    +
Sbjct: 217 LDAWRIPPSQQAQQFPFLINTTGLVQSSNALYPLLEGGVSATQT----RNVKAEENDQDR 272

Query: 284 MEDHHQELNLSRPFFG-----ISENNQY--WSGN-NWTDLSALNNSTSTNHL 327
             D     NLSR F G        N +Y  W GN +WT  ++ N   ST HL
Sbjct: 273 GRDGDGVNNLSRNFLGNININSGRNEEYTSWGGNSSWTGFTSNN---STGHL 321

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|O80928|DOF24_ARATH Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1

 Score =  157 bits (398), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 84/145 (57%), Positives = 92/145 (63%), Gaps = 11/145 (7%)

Query: 1   MVFSSVPVYLDPPNWHHQQP---NHQ-QGAGSENPHQLPPIPSAPHHVVGVGGA------ 50
           MVFSS+  YLD  NW    P   NH   GA +   H L P                    
Sbjct: 1   MVFSSIQAYLDSSNWQQAPPSNYNHDGTGASANGGHVLRPQLQPQQQPQQQPHPNGSGGG 60

Query: 51  -PGGAGSIRPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACR 109
             GG GSIR GSM DRAR A +   E  LKCPRC+STNTKFCYFNNYSL+QPRHFCK CR
Sbjct: 61  GGGGGGSIRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCR 120

Query: 110 RYWTRGGALRNVPVGGGCRRNKKSK 134
           RYWTRGGALRNVPVGGGCRRN+++K
Sbjct: 121 RYWTRGGALRNVPVGGGCRRNRRTK 145

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ56|DOF51_ARATH Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1 PE=2 SV=1

 Score =  155 bits (391), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 71/76 (93%)

Query: 57  IRPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGG 116
           IRPGSMA+RARLA IP  E  LKCPRCDSTNTKFCYFNNYSL+QPRHFCKACRRYWTRGG
Sbjct: 74  IRPGSMAERARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGG 133

Query: 117 ALRNVPVGGGCRRNKK 132
           ALR+VPVGGGCRRNK+
Sbjct: 134 ALRSVPVGGGCRRNKR 149

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 62/66 (93%)

Query: 75  EVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKSK 134
           E+ L+CPRCDSTNTKFCY+NNYSL+QPR+FCK+CRRYWT+GG LRN+PVGGGCR+NK+S 
Sbjct: 52  ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 111

Query: 135 SSSSSS 140
           SS++ S
Sbjct: 112 SSAARS 117

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 68/104 (65%), Gaps = 13/104 (12%)

Query: 36  PIPSAPHHVVGVGGAPGGAGSIRPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNN 95
           P+P   H + G              S   +   + +   +  LKCPRC+S NTKFCY+NN
Sbjct: 12  PVPKPDHRISGT-------------SQTKKPPSSSVAQDQQNLKCPRCNSPNTKFCYYNN 58

Query: 96  YSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKSKSSSSS 139
           YSLSQPRHFCK+CRRYWTRGGALRNVP+GGGCR+ KKS   +SS
Sbjct: 59  YSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKSIKPNSS 102

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDR0|DOF54_ARATH Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 65/88 (73%), Gaps = 4/88 (4%)

Query: 65  RARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVG 124
           RA    I +    LKCPRC+S NTKFCY+NNY+LSQPRHFCK CRRYWT+GG LRNVPVG
Sbjct: 38  RAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVG 97

Query: 125 GGCRRNKKSKS----SSSSSKSPANNTE 148
           GGCR+ K+SK+    SSSS+  P    +
Sbjct: 98  GGCRKAKRSKTKQVPSSSSADKPTTTQD 125

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|O24463|PBF_MAIZE Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 56/64 (87%), Gaps = 2/64 (3%)

Query: 70  KIPHTEVP--LKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGC 127
           + P  ++P  LKCPRCDS NTKFCY+NNYS+SQPR+FCKACRRYWT GG LRNVP+GGGC
Sbjct: 50  RKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGC 109

Query: 128 RRNK 131
           R+NK
Sbjct: 110 RKNK 113

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Zea mays (taxid: 4577)

>sp|Q8LE43|DOF21_ARATH Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 97/159 (61%), Gaps = 19/159 (11%)

Query: 80  CPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKSKSSSSS 139
           CPRC+S NTKFCY+NNYSLSQPR+FCK+CRRYWT+GG LRNVPVGGGCRRNK+S SS+ S
Sbjct: 50  CPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSSSAFS 109

Query: 140 SKSPAN----NTEKLQQMGNSNSTSSLPPEIIGHLQQQCNTPHQIPLMPSLHNLSQYNMG 195
             +       +T+ LQ    +   + +PP   G+        H I L  +   L ++++ 
Sbjct: 110 KNNNNKSINFHTDPLQ----NPLITGMPPSSFGY-------DHSIDLNLAFATLQKHHLS 158

Query: 196 SIGL--NFGGIGASSGVGSSHSTDHVGFQIGSNSSMSSS 232
           S     +FG  G  S  G  +ST+ VG   G N + ++S
Sbjct: 159 SQATTPSFGFGGDLSIYG--NSTNDVGIFGGQNGTYNNS 195

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
224059504	332	f-box family protein [Populus trichocarp	0.948	0.936	0.594	2e-91
225434982	320	PREDICTED: dof zinc finger protein DOF3.	0.899	0.921	0.556	2e-79
147777724	320	hypothetical protein VITISV_018540 [Viti	0.911	0.934	0.551	7e-79
224106505	326	f-box family protein [Populus trichocarp	0.954	0.960	0.609	3e-77
147846631	338	hypothetical protein VITISV_020749 [Viti	0.963	0.934	0.54	2e-76
356542453	307	PREDICTED: dof zinc finger protein DOF3.	0.893	0.954	0.523	7e-74
225449501	338	PREDICTED: dof zinc finger protein DOF3.	0.963	0.934	0.54	3e-72
296086231	337	unnamed protein product [Vitis vinifera]	0.932	0.908	0.536	1e-69
224113471	337	f-box family protein [Populus trichocarp	0.957	0.931	0.504	2e-63
297740387	323	unnamed protein product [Vitis vinifera]	0.865	0.879	0.515	4e-62

>gi|224059504|ref|XP_002299879.1| f-box family protein [Populus trichocarpa] gi|222847137|gb|EEE84684.1| f-box family protein [Populus trichocarpa]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 207/348 (59%), Positives = 242/348 (69%), Gaps = 37/348 (10%)

Query: 1   MVFSSVPVYLDPPNWHHQ---------QPNHQQGAGSENPHQLPPIPSAPHHVVGVGGAP 51
           MVFSSVP YLDPPNW  Q         QP+ Q GA +E+P   P  P    HV    G  
Sbjct: 1   MVFSSVPFYLDPPNWQQQPLNFSILQQQPSQQPGASNESPQLPPLPPPT--HV----GGS 54

Query: 52  GGAGSIRPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRY 111
           G AG+IRPGSMADRARLAKIP  EV LKCPRC+STNTKFCYFNNY+LSQPRHFCK CRRY
Sbjct: 55  GTAGTIRPGSMADRARLAKIPQPEVALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRY 114

Query: 112 WTRGGALRNVPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGN-SNSTSSLPPEIIGHL 170
           WTRGGALR+VPVGGGCRRNKK K  SSS    ++     +Q+G+ S+STS+LP ++IGHL
Sbjct: 115 WTRGGALRSVPVGGGCRRNKKRKVQSSSKSPVSSE----RQVGSTSSSTSALPSQVIGHL 170

Query: 171 QQQCNTPHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSG--VGSSHSTDHVGFQIGSNSS 228
            QQ +   Q+P M SLHNL+Q+  G+IGLNFGGI    G   G+S  TD +GFQIGSNS 
Sbjct: 171 PQQQS---QLPYMTSLHNLAQFGEGNIGLNFGGIQGQLGSTSGASGQTD-MGFQIGSNSG 226

Query: 229 MSSSAILSAGGGVQQFTFFEPPNTGLYSFQAEGIEAPSSL-------VVASNPRVSEQAP 281
           M+SSAILSA GGV QF FFE    GLY  Q+EG E P S+        + S+ RVS+ AP
Sbjct: 227 MNSSAILSA-GGVHQFPFFEFSPAGLYPLQSEGAETPISVHGDNQLQSMTSSSRVSQLAP 285

Query: 282 AKMEDHHQELNLSRPFFGISENNQ-YWSGNNWTDLSALNNSTSTNHLL 328
            K E  +Q LNLS+P+ G  +NNQ YW GN W DLS L NS+ST+HLL
Sbjct: 286 VKTEG-NQGLNLSKPYLGAPQNNQYYWGGNTWADLSGL-NSSSTSHLL 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434982|ref|XP_002281144.1| PREDICTED: dof zinc finger protein DOF3.6-like [Vitis vinifera]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 196/352 (55%), Positives = 232/352 (65%), Gaps = 57/352 (16%)

Query: 1   MVFSSVPVYLDPPNWHHQQPNHQQGAGSENPHQLPPIPSAPHHVVGVGGAPGGAGSIRPG 60
           MVFSSVP+Y DP NW  QQPN Q+G+G+ENP   PP P A           G  GSIRPG
Sbjct: 1   MVFSSVPLYPDPLNWQ-QQPNRQEGSGNENPQLPPPPPQA-----------GSLGSIRPG 48

Query: 61  SMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 120
           SMADRAR+AKIP  E  LKCPRC+STNTKFCYFNNYSL+QPRHFCK CRRYWTRGGALRN
Sbjct: 49  SMADRARVAKIPQPETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRN 108

Query: 121 VPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSSLP----PEIIGHLQQQCNT 176
           VPVGGGCRRN   KS SSSSKSPA+     ++   SNSTS++P     EIIGHL +Q + 
Sbjct: 109 VPVGGGCRRN--KKSKSSSSKSPAST----ERHAGSNSTSAIPSSGTAEIIGHLPKQAS- 161

Query: 177 PHQIPLMPSLHNLSQYNMGSIGLNFGG----IGASSGVGSSHSTDHVGFQIGSNSSMSSS 232
             Q+P MP+L NL+QY +G++ LNFGG    + ASSG G     + +GF IGSN     S
Sbjct: 162 --QLPFMPTLQNLTQYGIGNMSLNFGGNLPHVMASSGGGQ----NEMGFHIGSN-----S 210

Query: 233 AILSAGG-------GVQQFTF---FEPPNTGLYSFQAEGIEAPSSLV-------VASNPR 275
             LSA G        VQQF F   FEPP TGLY FQ E ++A SS+        + S   
Sbjct: 211 VGLSAEGVEQWRLQQVQQFPFLGSFEPP-TGLYPFQNEDVKASSSVDRNGHLPHMVSGSG 269

Query: 276 VSEQAPAKMEDHHQELNLSRPFFGISENNQYWSGNNWTDLSALNNSTSTNHL 327
           V++    K+ + +Q LNLSR F   SENNQYW GN WTD S LN+S+++N L
Sbjct: 270 VAQLTAVKLLE-NQGLNLSRQFLDTSENNQYWVGNAWTDFSGLNSSSTSNRL 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777724|emb|CAN60303.1| hypothetical protein VITISV_018540 [Vitis vinifera]

 Score =  300 bits (768), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 192/348 (55%), Positives = 227/348 (65%), Gaps = 49/348 (14%)

Query: 1   MVFSSVPVYLDPPNWHHQQPNHQQGAGSENPHQLPPIPSAPHHVVGVGGAPGGAGSIRPG 60
           MVFSSVP+Y DP NW  QQPN Q+G+G+ENP   PP P A           G  GSIRPG
Sbjct: 1   MVFSSVPLYPDPLNWQ-QQPNRQEGSGNENPQLPPPPPQA-----------GSLGSIRPG 48

Query: 61  SMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 120
           SMADRAR+AKIP  E  LKCPRC+STNTKFCYFNNYSL+QPRHFCK CRRYWTRGGALRN
Sbjct: 49  SMADRARVAKIPQPETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRN 108

Query: 121 VPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSSLP----PEIIGHLQQQCNT 176
           VPVGGGCRRN   KS SSSSKSPA+     ++   SNSTS++P     EIIGHL +Q + 
Sbjct: 109 VPVGGGCRRN--KKSKSSSSKSPAST----ERHAGSNSTSAIPSSGTAEIIGHLPKQAS- 161

Query: 177 PHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGVGSSHSTDHVGFQIGSNSSMSSSAILS 236
             Q+P MP+L NL+QY +G++ LNFGG        S    + +GF IGSN     S  LS
Sbjct: 162 --QLPFMPTLQNLTQYGIGNMSLNFGGNLPHXMASSGGGQNEMGFHIGSN-----SVGLS 214

Query: 237 AGG-------GVQQFTF---FEPPNTGLYSFQAEGIEAPSSLV-------VASNPRVSEQ 279
           A G        VQQF F   FEPP TGLY FQ E ++A SS+        + S   V++ 
Sbjct: 215 AEGVEQWRLQQVQQFPFLGSFEPP-TGLYPFQNEDVKASSSVDRNGHLPHMVSGSGVAQL 273

Query: 280 APAKMEDHHQELNLSRPFFGISENNQYWSGNNWTDLSALNNSTSTNHL 327
              K+ + +Q LNLSR F   SENNQYW GN WTD S LN+S+++N L
Sbjct: 274 TAVKLLE-NQGLNLSRQFLDTSENNQYWVGNAWTDFSGLNSSSTSNRL 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106505|ref|XP_002314189.1| f-box family protein [Populus trichocarpa] gi|222850597|gb|EEE88144.1| f-box family protein [Populus trichocarpa]

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 208/341 (60%), Positives = 242/341 (70%), Gaps = 28/341 (8%)

Query: 1   MVFSSVPVYLDPPNWHHQQPNHQQGAGSENPHQLPPIPSAPHHVVGVGGAPGGAGSIRPG 60
           MVFSSVPVYLDPP+W  QQ   QQ    +   QLPP+P  PH    VGG+ G AGSIRPG
Sbjct: 1   MVFSSVPVYLDPPSWQQQQQPSQQLGACDESPQLPPLPPPPH----VGGS-GTAGSIRPG 55

Query: 61  SMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 120
           SM+DRARLAKIP  E  LKCPRCDSTNTKFCYFNNYSLSQPRHFCK CRRYWTRGGALR+
Sbjct: 56  SMSDRARLAKIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRS 115

Query: 121 VPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMG--NSNSTSSLPPEIIGHLQQQCNTPH 178
           VPVGGGCRRNKK+KS SSS    ++     +QMG  +S S+S+LP +IIGH  QQ     
Sbjct: 116 VPVGGGCRRNKKTKSQSSSKSPVSSE----RQMGSTSSTSSSALPSQIIGHFPQQ---QT 168

Query: 179 QIPLMPSLHNLSQYNMGSIGLNFGGIGASSGVGSSHSTDH-VGFQIGSNSSMSSSAILSA 237
           Q P + SLHNL+Q+ +G+IGLNFGGI    G  S  S    + FQ+GS S MSSS+I SA
Sbjct: 169 QFPFVTSLHNLTQFGVGNIGLNFGGIQGQMGSTSGASGQAGMEFQMGSGSGMSSSSIFSA 228

Query: 238 GGGVQQFTFFEPPNTGLYSFQAE-GIEAPSSL--------VVASNPRVSEQAPAKMEDHH 288
            GGVQQF FFE P  GLY FQ++ G EAP+ +         +AS+ RVS+ AP K E  +
Sbjct: 229 -GGVQQFPFFESPPAGLYPFQSDQGAEAPTGIPGESSQLRSMASSSRVSQLAPVKSEG-N 286

Query: 289 QELNLSRPFFGISENNQ-YWSGNNWTDLSALNNSTSTNHLL 328
           Q LNLS+P+ GI ENNQ YW GN WTDLS L NS+ST+H L
Sbjct: 287 QGLNLSKPYLGIPENNQYYWGGNTWTDLSGL-NSSSTSHFL 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846631|emb|CAN79495.1| hypothetical protein VITISV_020749 [Vitis vinifera]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 189/350 (54%), Positives = 222/350 (63%), Gaps = 34/350 (9%)

Query: 1   MVFSSVPVYLDPPNWHHQQPNHQQGAGSENPHQLPPIPSAPHHVVGVGGAPGGAGSIRPG 60
           MVFSSVPVYLDPPNW  QQ NHQ G GS +   LPP  + P      GG  GG G+IRPG
Sbjct: 1   MVFSSVPVYLDPPNWQ-QQANHQPG-GSNDNPHLPPQQAPPPLPPVGGGGSGGTGTIRPG 58

Query: 61  SMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 120
           SMADRARLAK+P  E  LKCPRC+STNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN
Sbjct: 59  SMADRARLAKLPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 118

Query: 121 VPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSSLP-----PEIIGHLQQQCN 175
           VPVGGGCRRNK+SK   + SKSP       ++ G S+S S++P      ++IGHL     
Sbjct: 119 VPVGGGCRRNKRSK--GNRSKSPVTG----ERQGGSSSASAVPSNSCTSDMIGHLPPP-P 171

Query: 176 TPHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGV-GSSHSTDHVGFQIGSNSSMSSSAI 234
            P Q+  +P LH+L+ Y  G IGLNFGGI     V G  +S   + F IGS S      +
Sbjct: 172 PPPQLSFLPXLHHLADYGAGDIGLNFGGIQPPVAVSGGGNSGTDIEFPIGSCSGGGGPIL 231

Query: 235 LSAGGG------VQQFTF---FEPPNTGLYSFQAEGIEAPSSL-------VVASNPRVSE 278
                       VQQF F    EPP +GLYSF+ EG E PS L         A +  V++
Sbjct: 232 SGGLAEQWRLQQVQQFPFLAGLEPP-SGLYSFEGEGTEPPSYLGGSGHLRAKALDSGVTQ 290

Query: 279 QAPAKMEDHHQELNLSRPFFGISENNQYWSGNNWTDLSALNNSTSTNHLL 328
               K+E+ +Q LNLSR F G+  N+QYWSGN W DLS  N+ST T+HLL
Sbjct: 291 MTAVKIEE-NQGLNLSRNFLGLPGNDQYWSGNTWNDLSGFNSST-TSHLL 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542453|ref|XP_003539681.1| PREDICTED: dof zinc finger protein DOF3.6-like [Glycine max]

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 179/342 (52%), Positives = 221/342 (64%), Gaps = 49/342 (14%)

Query: 1   MVFSSVPVYLDPPNWHHQQPNHQQGA--GSENPHQLPPIPSAPHHVVGVGGAPGGAGSIR 58
           MVFSS+PV++DPPNW  QQPNH Q +  G +N      +P  P H   VGG+    GSIR
Sbjct: 1   MVFSSIPVFVDPPNWQ-QQPNHPQASNNGGDNSQL---LPPLPPHQPHVGGS---VGSIR 53

Query: 59  PGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGAL 118
           PGSMADRARLAKIP  E  LKCPRCDSTNTKFCYFNNYSLSQPRHFCK CRRYWT GGAL
Sbjct: 54  PGSMADRARLAKIPPPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTSGGAL 113

Query: 119 RNVPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSS--LPPEIIGHLQQQCNT 176
           RNVPVGGGCRRNKK+K   S SKSPA ++EK    G++++T S     E++G L Q    
Sbjct: 114 RNVPVGGGCRRNKKNK--RSRSKSPA-SSEKQTLSGSTSATPSGGTTHELVGQLPQ---- 166

Query: 177 PHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGVGSSHSTDHVGFQIGSNSSMSSSAILS 236
           P  +P M SL NL++Y +G++GL    I   +        +++GFQIG++S        +
Sbjct: 167 PPNLPFMASLQNLNRYAVGNMGLGLREIHGQN--------ENMGFQIGNSS--------A 210

Query: 237 AGGGVQQFTF--------FEPPNTGLYSFQAEGIEAPSSL--VVASNPRVSEQAPAKMED 286
           AGGG+ Q+          FE  + G Y FQ EGIE PS     +A+N RVS+    KME+
Sbjct: 211 AGGGMDQWRIQQVPFLNGFESTSAGSYPFQNEGIETPSGFGGDIATNSRVSQMPSVKMEE 270

Query: 287 HHQELNLSRPFFGISENNQYWSGNNWTDLSALNNSTSTNHLL 328
               LNLSR    +SENNQY+S   WTD+S L +S++T HLL
Sbjct: 271 SG-ALNLSRSTLNVSENNQYYS---WTDMSGLASSSAT-HLL 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449501|ref|XP_002278642.1| PREDICTED: dof zinc finger protein DOF3.6 [Vitis vinifera]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 189/350 (54%), Positives = 222/350 (63%), Gaps = 34/350 (9%)

Query: 1   MVFSSVPVYLDPPNWHHQQPNHQQGAGSENPHQLPPIPSAPHHVVGVGGAPGGAGSIRPG 60
           MVFSSVPVYLDPPNW  QQ NHQ G GS +   LPP  + P      GG  GG G+IRPG
Sbjct: 1   MVFSSVPVYLDPPNWQ-QQANHQPG-GSNDNPHLPPQQAPPPLPPVGGGGSGGTGTIRPG 58

Query: 61  SMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 120
           SMADRARLAK+P  E  LKCPRC+STNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN
Sbjct: 59  SMADRARLAKLPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 118

Query: 121 VPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSSLP-----PEIIGHLQQQCN 175
           VPVGGGCRRNK+SK   + SKSP       ++ G S+S S++P      ++IGHL     
Sbjct: 119 VPVGGGCRRNKRSK--GNRSKSPVTG----ERQGGSSSASAVPSNSCTSDMIGHLPPP-P 171

Query: 176 TPHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGV-GSSHSTDHVGFQIGSNSSMSSSAI 234
            P Q+  +P LH+L+ Y  G IGLNFGGI     V G  +S   + F IGS S      +
Sbjct: 172 PPPQLSFLPPLHHLADYGAGDIGLNFGGIQPPVAVSGGGNSGTDIEFPIGSCSGGGGPIL 231

Query: 235 LSAGGG------VQQFTF---FEPPNTGLYSFQAEGIEAPSSL-------VVASNPRVSE 278
                       VQQF F    EPP +GLYSF+ EG E PS L         A +  V++
Sbjct: 232 SGGLAEHWRLQQVQQFPFLAGLEPP-SGLYSFEGEGTEPPSYLGGSGHLRAKALDSGVTQ 290

Query: 279 QAPAKMEDHHQELNLSRPFFGISENNQYWSGNNWTDLSALNNSTSTNHLL 328
               K+E+ +Q LNLSR F G+  N+QYWSGN W DLS  N+ST T+HLL
Sbjct: 291 MTAVKIEE-NQGLNLSRNFLGLPGNDQYWSGNTWNDLSGFNSST-TSHLL 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086231|emb|CBI31672.3| unnamed protein product [Vitis vinifera]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 182/339 (53%), Positives = 213/339 (62%), Gaps = 33/339 (9%)

Query: 1   MVFSSVPVYLDPPNWHHQQPNHQQGAGSENPHQLPPIPSAPHHVVGVGGAPGGAGSIRPG 60
           MVFSSVPVYLDPPNW  QQ NHQ G GS +   LPP  + P      GG  GG G+IRPG
Sbjct: 1   MVFSSVPVYLDPPNWQ-QQANHQPG-GSNDNPHLPPQQAPPPLPPVGGGGSGGTGTIRPG 58

Query: 61  SMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 120
           SMADRARLAK+P  E  LKCPRC+STNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN
Sbjct: 59  SMADRARLAKLPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 118

Query: 121 VPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSSLP-----PEIIGHLQQQCN 175
           VPVGGGCRRNK+SK   + SKSP       ++ G S+S S++P      ++IGHL     
Sbjct: 119 VPVGGGCRRNKRSK--GNRSKSPVTG----ERQGGSSSASAVPSNSCTSDMIGHLPPP-P 171

Query: 176 TPHQIPLMPSLHNLSQYNMGSIGLNFGGIGASSGV-GSSHSTDHVGFQIGSNSSMSSSAI 234
            P Q+  +P LH+L+ Y  G IGLNFGGI     V G  +S   + F IGS S      +
Sbjct: 172 PPPQLSFLPPLHHLADYGAGDIGLNFGGIQPPVAVSGGGNSGTDIEFPIGSCSGGGGPIL 231

Query: 235 LSAGGG------VQQFTF---FEPPNTGLYSFQAEGIEAPSSL-------VVASNPRVSE 278
                       VQQF F    EPP +GLYSF+ EG E PS L         A +  V++
Sbjct: 232 SGGLAEHWRLQQVQQFPFLAGLEPP-SGLYSFEGEGTEPPSYLGGSGHLRAKALDSGVTQ 290

Query: 279 QAPAKMEDHHQELNLSRPFFGISENNQYWSGNNWTDLSA 317
               K+E+ +Q LNLSR F G+  N+QYWSGN W DLS 
Sbjct: 291 MTAVKIEE-NQGLNLSRNFLGLPGNDQYWSGNTWNDLSG 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113471|ref|XP_002332583.1| f-box family protein [Populus trichocarpa] gi|222832921|gb|EEE71398.1| f-box family protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 177/351 (50%), Positives = 208/351 (59%), Gaps = 37/351 (10%)

Query: 1   MVFSSVPVYLDPPNWHHQQPNHQ-QGAGSENPHQLPPIPSAPHHVVGVGGAPGGAGSIRP 59
           MVFSS+PVYLDPPNW  Q  N    GAG+ENP   PP         G G     AGSIRP
Sbjct: 1   MVFSSIPVYLDPPNWQQQHNNQPPAGAGNENPQLPPPSGPPTGGGDGGGTT---AGSIRP 57

Query: 60  GSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALR 119
           GSM DRARLAKIP  E+ LKCPRC+STNTKFCYFNNYSL+QPRHFCK CRRYWTRGGALR
Sbjct: 58  GSMTDRARLAKIPLPEMALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALR 117

Query: 120 NVPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSSLPPEIIGHLQQQCNTPHQ 179
           NVPVGGGCRRNK+SK  S  SKSP           +SN  ++   +I G++         
Sbjct: 118 NVPVGGGCRRNKRSK-GSGRSKSPVKAGSSSSGGLSSNGGTT---DITGNMTTPPPLLPI 173

Query: 180 IPLMPSLHNLSQYNMGSIGLNFGGIGASSGVGSSHSTDHVGFQI-GSNSSMSSSAILSAG 238
               P LH+L  YN   IGLNFGGI   S   ++     V FQ+  S SS S    + + 
Sbjct: 174 ---FPPLHHLGDYNSPDIGLNFGGI-LPSVGATAGGGGGVEFQMENSTSSNSVGGSVLSS 229

Query: 239 GGVQQFTFFE--------------PPNTGLYSFQAEGIEAPSSLV--VASNPR----VSE 278
           G V+Q+   +               P++GLYSF+  GI  PS+    + S P     VS+
Sbjct: 230 GLVEQWRLQQVQHQVQQYPFLSNLEPSSGLYSFEGGGI-GPSNYAGQIRSRPLDSTGVSQ 288

Query: 279 QAPAKMEDHHQELNLSRPFFGISENNQYWSGNN-WTDLSALNNSTSTNHLL 328
            A  KME  +Q LNLSR F GIS N+QYW GNN WTDL     S+ST+HLL
Sbjct: 289 LASVKMEG-NQGLNLSRNFLGISGNDQYWGGNNAWTDLPGF-TSSSTSHLL 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740387|emb|CBI30569.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 171/332 (51%), Positives = 198/332 (59%), Gaps = 48/332 (14%)

Query: 1   MVFSSVPVYLDPPNWHHQQP-NHQQGA-GSENPHQLPPIPSAPHHVVGVGGAPGGAGSIR 58
           MVFSS+P YLDP NW  QQP NH+ G+ G  N    PP P    H    GG  GG GSIR
Sbjct: 1   MVFSSMPSYLDPANW--QQPHNHEAGSSGLPNQPPPPPPPPPQPH----GG--GGTGSIR 52

Query: 59  PGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGAL 118
           PGSMADRARLA IP  E  LKCPRC+STNTKFCYFNNYSLSQPRHFCK CRRYWTRGGAL
Sbjct: 53  PGSMADRARLANIPLPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGAL 112

Query: 119 RNVPVGGGCRRNKKSKSSSSSSKSPANNTEKLQQMGNSNSTSSLPPEIIGHLQQQCNTPH 178
           RNVPVGGGCRRNK+SK SSS S    +        G  +S  S   EI+G          
Sbjct: 113 RNVPVGGGCRRNKRSKGSSSKSPVSGDRQAGSSSTGAIHSNCST-AEILG-------LAP 164

Query: 179 QIP---LMPSLHNLSQYNMGSIGLNFGGIGASSGVGSSHSTDHVGFQIGSNSSMSSSAIL 235
           QIP    M  LH+L+ Y  G IGLN+ GI  + G      T  + FQIGS          
Sbjct: 165 QIPPMRFMAPLHHLADYGAGDIGLNYSGIPTAVG-----GTGDMNFQIGSLEQWRLQQ-- 217

Query: 236 SAGGGVQQFTF---FEPPNTGLYSFQAEGIEAPSSLVVASN---PR-----VSEQAPAKM 284
                 QQF F    +PP  GLY  +  G+E PS+ V  S+   P+     +S+ A  KM
Sbjct: 218 -----TQQFPFLGGLDPP-PGLYPLEG-GVE-PSNYVGGSSQVRPKLTGSGLSQVASVKM 269

Query: 285 EDHHQELNLSRPFFGISENNQYWSGNNWTDLS 316
           ED+H E+N++R F GI  N+QYW GN WTDL+
Sbjct: 270 EDNH-EMNVARQFLGIPGNDQYWGGNAWTDLA 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2053175	340	AT2G28810 [Arabidopsis thalian	0.399	0.385	0.556	1.6e-47
TAIR|locus:2026595	339	OBP2 [Arabidopsis thaliana (ta	0.493	0.477	0.488	1.1e-46
TAIR|locus:2181773	399	AT5G02460 [Arabidopsis thalian	0.408	0.335	0.573	4e-45
TAIR|locus:2040746	330	DOF2.4 "DNA binding with one f	0.423	0.421	0.520	6.5e-40
TAIR|locus:2039959	369	DAG2 "DOF AFFECTING GERMINATIO	0.161	0.143	0.792	4.4e-28
TAIR|locus:2155755	316	AT5G65590 [Arabidopsis thalian	0.158	0.164	0.884	6.6e-28
TAIR|locus:2056588	288	AT2G28510 [Arabidopsis thalian	0.335	0.381	0.470	6.6e-28
TAIR|locus:2019499	352	AT1G64620 [Arabidopsis thalian	0.320	0.298	0.481	2.2e-27
TAIR|locus:2159275	307	OBP4 "OBF binding protein 4" [	0.213	0.228	0.685	9.4e-27
TAIR|locus:2134981	342	AT4G24060 [Arabidopsis thalian	0.216	0.207	0.630	3.1e-26

TAIR|locus:2053175 AT2G28810 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
 Identities = 79/142 (55%), Positives = 93/142 (65%)

Query:    60 GSMADRARLAKIPHT-EVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGAL 118
             G  A+RARLAK     E  LKCPRCDS NTKFCYFNNY+L+QPRHFCKACRRYWTRGGAL
Sbjct:    75 GQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGAL 134

Query:   119 RNVPVGGGCRRNXXXXXXXXXXXXPANNTEKLQQMGNSNSTSSLPPEIIGHLQQQCNTPH 178
             RNVPVGGGCRRN             + N +    +   N+TS   P    ++Q Q N+  
Sbjct:   135 RNVPVGGGCRRNKKGKSGNSKSSSSSQNKQSTSMV---NATS---PTNTSNVQLQTNS-- 186

Query:   179 QIPLMPSLHNLSQYNMGSIGLN 200
             Q P +P+L NL+Q  +G IGLN
Sbjct:   187 QFPFLPTLQNLTQ--LGGIGLN 206

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026595 OBP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 86/176 (48%), Positives = 103/176 (58%)

Query:    25 GAGSENPHQLPPIXXXXXXXXXXXXXXXXXXXIRPGSMADRARLAKIPHTEVPLKCPRCD 84
             G G    HQLPP+                      GSMA+RAR A IP    PLKCPRCD
Sbjct:    32 GHGLVLSHQLPPLQANPNPNHHHVATSAGLPSRMGGSMAERARQANIPPLAGPLKCPRCD 91

Query:    85 STNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNXXXXXXXXXXXXPA 144
             S+NTKFCY+NNY+L+QPRHFCK CRRYWT+GGALRNVPVGGGCRRN             +
Sbjct:    92 SSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKNGNLKS--S 149

Query:   145 NNTEKLQQMGNSNSTSSLPPEIIGHLQQQCNTPHQIPLMPSLHNLSQYNMGSIGLN 200
             +++ K     N+ S SS      G L+    T HQ P  P+L+NL+Q  +G IGLN
Sbjct:   150 SSSSKQSSSVNAQSPSS------GQLR----TNHQFPFSPTLYNLTQ--LGGIGLN 193

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009625 "response to insect" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0003002 "regionalization" evidence=IMP

TAIR|locus:2181773 AT5G02460 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 4.0e-45, Sum P(3) = 4.0e-45
 Identities = 82/143 (57%), Positives = 89/143 (62%)

Query:    57 IRPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGG 116
             IRPGSMA+RARLA IP  E  LKCPRCDSTNTKFCYFNNYSL+QPRHFCKACRRYWTRGG
Sbjct:    74 IRPGSMAERARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGG 133

Query:   117 ALRNVPVGGGCRRNXXXXXXXXXXXXPANNTEKLQQMGNSNSTSSLPPEIIGHLQQQCNT 176
             ALR+VPVGGGCRRN              ++       GNS S  S       H +   N 
Sbjct:   134 ALRSVPVGGGCRRNKRTKNSSGGGGGSTSS-------GNSKSQDSATSNDQYHHRAMANN 186

Query:   177 PHQIPLMPS-LHNL-SQYNMGSI 197
                 P   S L +L S YN G I
Sbjct:   187 QMGPPSSSSSLSSLLSSYNAGLI 209

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2040746 DOF2.4 "DNA binding with one finger 2.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 6.5e-40, Sum P(3) = 6.5e-40
 Identities = 77/148 (52%), Positives = 93/148 (62%)

Query:    57 IRPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGG 116
             IR GSM DRAR A +   E  LKCPRC+STNTKFCYFNNYSL+QPRHFCK CRRYWTRGG
Sbjct:    68 IRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGG 127

Query:   117 ALRNVPVGGGCRRNXXXXXXXXX---XXXPANNTEKLQQMGNSNSTSSLPPEIIGHLQQQ 173
             ALRNVPVGGGCRRN                +NNT      GN+++ S++     G  Q+ 
Sbjct:   128 ALRNVPVGGGCRRNRRTKSNSNNNNNSTATSNNTSF--SSGNASTISTILSSHYGGNQES 185

Query:   174 CNTPHQIPLMPS-LHNLSQYNMGSIGLN 200
               +  QI L P+ L N +  ++G +  N
Sbjct:   186 ILS--QI-LSPARLMNPTYNHLGDLTSN 210

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2039959 DAG2 "DOF AFFECTING GERMINATION 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 4.4e-28, Sum P(3) = 4.4e-28
 Identities = 42/53 (79%), Positives = 48/53 (90%)

Query:    78 LKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRN 130
             L CPRC+STNTKFCY+NNYSL+QPR+FCK CRRYWT GG+LRNVPVGG  R+N
Sbjct:    80 LNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKN 132

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009409 "response to cold" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2155755 AT5G65590 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 46/52 (88%), Positives = 51/52 (98%)

Query:    78 LKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRR 129
             LKCPRC+S NTKFCY+NNYSLSQPRHFCK+CRRYWTRGGALRNVP+GGGCR+
Sbjct:    41 LKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRK 92

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2056588 AT2G28510 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 55/117 (47%), Positives = 69/117 (58%)

Query:    80 CPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNXXXXXXXXX 139
             CPRC+S NTKFCY+NNYSLSQPR+FCK+CRRYWT+GG LRNVPVGGGCRRN         
Sbjct:    50 CPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSSSAFS 109

Query:   140 XXXPANNTEKLQQMGNSNSTSSLPPEIIGHLQQQCNTPHQIPLMPSLHNLSQYNMGS 196
                  NN + +    N ++     P I G         H I L  +   L ++++ S
Sbjct:   110 KN---NNNKSI----NFHTDPLQNPLITGMPPSSFGYDHSIDLNLAFATLQKHHLSS 159

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2019499 AT1G64620 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
 Identities = 51/106 (48%), Positives = 65/106 (61%)

Query:    59 PGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGAL 118
             P S A        P  +  L CPRC+S NTKFCY+NNYSL+QPR+FCK CRRYWT GG+L
Sbjct:    30 PPSPATPVERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSL 89

Query:   119 RNVPVGGGCRRNXXXXXXXXXXXXPANNTEKLQQMGNSNS-TSSLP 163
             RN+PVGGG R+N             ++++ K     N+N+ T  LP
Sbjct:    90 RNIPVGGGVRKNKRSSSNSSSSSPSSSSSSKKPLFANNNTPTPPLP 135

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2159275 OBP4 "OBF binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
 Identities = 48/70 (68%), Positives = 54/70 (77%)

Query:    60 GSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALR 119
             G    RA    I +    LKCPRC+S NTKFCY+NNY+LSQPRHFCK CRRYWT+GG LR
Sbjct:    33 GDRRMRAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLR 92

Query:   120 NVPVGGGCRR 129
             NVPVGGGCR+
Sbjct:    93 NVPVGGGCRK 102

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2134981 AT4G24060 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 46/73 (63%), Positives = 58/73 (79%)

Query:    58 RPGSMADRARLAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGA 117
             +P S+    R A+ P  +  + CPRC+STNTKFCY+NNYSL+QPR+FCK CRRYWT GG+
Sbjct:    35 QPPSVGGE-RKAR-PEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGS 92

Query:   118 LRNVPVGGGCRRN 130
             LRN+PVGGG R+N
Sbjct:    93 LRNIPVGGGSRKN 105

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I001774 f-box family protein (323 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	1e-39

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  133 bits (337), Expect = 1e-39
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 77  PLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKSKS 135
            LKCPRCDS NTKFCY+NNY+L+QPR+FCK CRRYWT GGALRNVPVGGG R+NK+S S
Sbjct: 5   ALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKRSSS 63

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	94.67
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	92.1
COG3677	129	Transposase and inactivated derivatives [DNA repli	91.76
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	91.66
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	87.71
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	85.06
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	80.41

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=1.2e-37  Score=237.72  Aligned_cols=63  Identities=79%  Similarity=1.569  Sum_probs=60.4

Q ss_pred             CCCCCCCCCCCCCCCcceeeecCCCCCcCchhhhhhhcccccCccccccccCCCcccCCCCCC
Q 020288           73 HTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKSKS  135 (328)
Q Consensus        73 ~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRywT~GG~lRnvPvGgG~Rknkr~~~  135 (328)
                      .||+.++||||+|+||||||||||+++||||||++|+||||+||+||||||||||||+|++++
T Consensus         1 ~~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    1 KPEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CCccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            478999999999999999999999999999999999999999999999999999999998763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=94.67  E-value=0.022  Score=50.00  Aligned_cols=34  Identities=26%  Similarity=0.724  Sum_probs=27.5

Q ss_pred             CCCCCCCCCCCcceeeecCCC--CCcCchhhhhhhccc
Q 020288           77 PLKCPRCDSTNTKFCYFNNYS--LSQPRHFCKACRRYW  112 (328)
Q Consensus        77 ~~~CPRC~S~~Tkfcy~NNy~--~~QPR~fCk~CrRyw  112 (328)
                      ...||||.|.+|+.  .+.|-  .++.-|+|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~--~s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTI--TSIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEe--ecCCCChhhHHHhhhhhhCCcH
Confidence            47999999999997  56664  457779999998644

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=92.10  E-value=0.11  Score=37.12  Aligned_cols=36  Identities=39%  Similarity=0.765  Sum_probs=26.1

Q ss_pred             hccCCCCCCCCCCCCCCCCCcceeeecCCCCCcCchhhhhhhc
Q 020288           68 LAKIPHTEVPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRR  110 (328)
Q Consensus        68 ~a~~p~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrR  110 (328)
                      |+.+-=|+. ..||+|.+.  ++..+.+    ..++.|++|++
T Consensus        10 l~~~RW~~g-~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   10 LEEIRWPDG-FVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             HHHhcCCCC-CCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            444444444 669999998  6655555    78999999985

It may be a zinc-binding beta ribbon domain that could bind DNA.

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=91.76  E-value=0.1  Score=44.95  Aligned_cols=36  Identities=31%  Similarity=0.640  Sum_probs=28.4

Q ss_pred             CCCCCCCCCCCcceeeecCCCCCcCchhhhhhhccccc
Q 020288           77 PLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTR  114 (328)
Q Consensus        77 ~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRywT~  114 (328)
                      ...||+|.+.+.+  =+.-+.....|+.|++|++-|+.
T Consensus        30 ~~~cP~C~s~~~~--k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          30 KVNCPRCKSSNVV--KIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             cCcCCCCCcccee--eECCccccccccccCCcCcceee
Confidence            3789999999922  25555556999999999998874

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=91.66  E-value=0.094  Score=36.65  Aligned_cols=31  Identities=42%  Similarity=0.738  Sum_probs=21.7

Q ss_pred             CCCCCCCCCCCcceeeecCCCC-CcCchhhhhhh
Q 020288           77 PLKCPRCDSTNTKFCYFNNYSL-SQPRHFCKACR  109 (328)
Q Consensus        77 ~~~CPRC~S~~Tkfcy~NNy~~-~QPR~fCk~Cr  109 (328)
                      .+.||+|.+++.-  |=|-.+. -..||+|++|+
T Consensus         5 ~v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    5 DVHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            3789999998721  1344433 35899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=87.71  E-value=0.42  Score=33.68  Aligned_cols=37  Identities=24%  Similarity=0.722  Sum_probs=28.2

Q ss_pred             CCCCCCCCCCcceeeecCCCCCcC---chhhhhhhccccc
Q 020288           78 LKCPRCDSTNTKFCYFNNYSLSQP---RHFCKACRRYWTR  114 (328)
Q Consensus        78 ~~CPRC~S~~Tkfcy~NNy~~~QP---R~fCk~CrRywT~  114 (328)
                      .+||+|...+.-|-..+-.+...|   -|.|.+|...|.+
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            379999988777765556655555   4999999999964

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.06  E-value=0.55  Score=32.83  Aligned_cols=36  Identities=28%  Similarity=0.755  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCcceeeecCCCCCcC---chhhhhhhcccc
Q 020288           78 LKCPRCDSTNTKFCYFNNYSLSQP---RHFCKACRRYWT  113 (328)
Q Consensus        78 ~~CPRC~S~~Tkfcy~NNy~~~QP---R~fCk~CrRywT  113 (328)
                      .+||.|...+..|--.+..+...|   .|.|.+|..-|+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~wr   39 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRWR   39 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCeeC
Confidence            379999998877655555555544   389999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=80.41  E-value=1.9  Score=32.25  Aligned_cols=42  Identities=29%  Similarity=0.687  Sum_probs=29.9

Q ss_pred             CCCCCCCCCcceeeecCCCCCcCchhhhhhhcccccCcccccccc
Q 020288           79 KCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV  123 (328)
Q Consensus        79 ~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRywT~GG~lRnvPv  123 (328)
                      .|--|..++|..=.-..   .....+|-+|..||.+.|..|.+-.
T Consensus         1 ~C~~C~~~~Tp~WR~g~---~~~~~LCNaCgl~~~k~~~~rp~~~   42 (54)
T cd00202           1 ACSNCGTTTTPLWRRGP---SGGSTLCNACGLYWKKHGVMRPLSK   42 (54)
T ss_pred             CCCCCCCCCCcccccCC---CCcchHHHHHHHHHHhcCCCCCccc
Confidence            37788888776422222   4678999999999999996655443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	89.06
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	88.16

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.06  E-value=0.14  Score=37.73  Aligned_cols=45  Identities=18%  Similarity=0.414  Sum_probs=33.1

Q ss_pred             CCCCCCCCCCCCCCCcceeeecCCCCCcCc---hhhhhhhcccccCcc
Q 020288           73 HTEVPLKCPRCDSTNTKFCYFNNYSLSQPR---HFCKACRRYWTRGGA  117 (328)
Q Consensus        73 ~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRywT~GG~  117 (328)
                      +|..-..||+|...+.-|-+.+-.+..-|-   |.|..|.-.|+...+
T Consensus        19 lp~t~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          19 LPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             SCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             CCccCCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            344457999999888777666665554443   899999999998443

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.16  E-value=0.12  Score=35.82  Aligned_cols=37  Identities=22%  Similarity=0.633  Sum_probs=31.1

Q ss_pred             CCCCCCCCCCCCcceeeecCCCCCcCc---hhhhhhhccc
Q 020288           76 VPLKCPRCDSTNTKFCYFNNYSLSQPR---HFCKACRRYW  112 (328)
Q Consensus        76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyw  112 (328)
                      ..++||+|.+.+..|--.+..+...|-   +.|..|..-|
T Consensus         8 ~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             CCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            457999999999887777777777775   8999999888