Citrus Sinensis ID: 020291

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MKMEAGQATSSSSWLENSSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNGDSDEASQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRGCYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSLIKSSQLMLDSTTSDQCPMISFGSAHITEKDFNPFLSSFPSIKQESNKDDQGPLSDMTHNQSSSSDEYLVSHDFPAFESNEHMKVLSSDHGDVISGVNSSCTASAHSLDLAVDMSVNFDDVLEFNF
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccEEHccccEcccccccccEEEEccccccccccEEEEEEccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccEEcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkmeagqatsssswleNSSDRRRAIEELIKGQEMALQLRNLIHTstkkgegskaMIINQDLVANILSSFTNSLsilkngdsdeasqvqehtqlsspcweaylktedsgessksstvkdrrgcykrrkcaeswtehsstltddgHAWRKYGQKVILnarfprnyfrcthkfdqgcqASKQVQriqeepplhrttyygrhtCKSLIKSSqlmldsttsdqcpmisfgsahitekdfnpflssfpsikqesnkddqgplsdmthnqssssdeylvshdfpafesnehmkvlssdhgdvisgvnssctasaHSLDLAVDMsvnfddvlefnf
Flexible Loop (DISEMBL)
mkmeagqatsssswlenssDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNGDSDEASQVQEHTQLSSPCWEAYLKtedsgessksstvkdrrgcykrrkcaeswtehsstltddghaWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQvqriqeepplhrttyyGRHTCKSLIKSSQLMLDSTTSDQCPMISFGSAHITEKDFNPFLSSFPSIKQESNKDDQGPLSDMTHNQSSSSDEYLVSHDFPAFESNEHMKVLSSDHGDVISGVNSSCTASAHSLDLAVDMSVNFDDVLEFNF
Low Complexity Region (SEG)
MKMEAGQATSSSSWLENSSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNGDSDEASQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRGCYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSLIKSSQLMLDSTTSDQCPMISFGSAHITEKDFNPFLSSFPSIKQESNKDDQGPLSDMTHNQSSSSDEYLVSHDFPAFESNEHMKVLSSDHGDVISGVNSSCTASAHSLDLAVDMSVNFDDVLEFNF
Disordered region (IsUnstruct)
**********************************ALQLRNLIH**********AMIINQDLVANILSSFTNSLSI**********************W************************YKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQAS***********LHRTTYYGRHTCKSLIKSSQLML*******CPMISFGSAHIT*****************************************************************I**V***CTASAHSLDLAVDMSVNFDDVL****
Disordered Region (DISOPRED)
************************IEELIKGQEMALQL**************************ILS***********************************************************************LTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCK******************************************************************************************************TASAHSLDLAVDMSVNFDDVLEFNF
Disordered Region (DISEMBL)
*******************DRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNG**************SSPCWEAYL**************************************DDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSLIKSSQLMLDSTTSDQCPMISFGSAHITEKDFNPFLSSFPSIK************************YLVSHDFPAFESNEHMKVLSSDHGDVISGVNSSCTASAHSLDLAVDMSVNFDDVLEFNF
Disordered Region (DISPRO)
*************WLENSSDRRRAIEELIKGQEMALQLRNLIH**************NQDLVANILSSFTNSLSILK*******************************************GCYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHT**********************************************************************************************DV*****SSCTASAHSLDLAVDMSVNFDDVLEFNF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMEAGQATSSSSWLENSSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNGDSDEASQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRGCYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSLIKSSQLMLDSTTSDQCPMISFGSAHITEKDFNPFLSSFPSIKQESNKDDQGPLSDMTHNQSSSSDEYLVSHDFPAFESNEHMKVLSSDHGDVISGVNSSCTASAHSLDLAVDMSVNFDDVLEFNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q9LY00	294	Probable WRKY transcripti	yes	no	0.533	0.595	0.417	6e-34
Q93WU8	346	Probable WRKY transcripti	no	no	0.545	0.517	0.333	5e-23
Q9LZV6	263	Probable WRKY transcripti	no	no	0.631	0.787	0.319	2e-21
Q8GWF1	289	Probable WRKY transcripti	no	no	0.606	0.688	0.314	2e-20
Q93WV7	254	Probable WRKY transcripti	no	no	0.692	0.893	0.291	3e-20
Q9SKD9	295	Probable WRKY transcripti	no	no	0.567	0.630	0.292	6e-20
Q9C557	249	Probable WRKY transcripti	no	no	0.475	0.626	0.342	1e-18
Q8H0Y8	313	Probable WRKY transcripti	no	no	0.560	0.587	0.331	1e-18
Q9SHB5	292	WRKY transcription factor	no	no	0.371	0.417	0.406	8e-18
Q9C6H5	241	Probable WRKY transcripti	no	no	0.192	0.261	0.555	7e-17

>sp|Q9LY00|WRK70_ARATH Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1

 Score =  144 bits (364), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 119/189 (62%), Gaps = 14/189 (7%)

Query: 17  NSSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSIL 76
           N + + + + +L++G ++  QL+ L+   ++ G G       +DLVA IL  F N++S+L
Sbjct: 4   NKAKKLKVMNQLVEGHDLTTQLQQLL---SQPGSGL------EDLVAKILVCFNNTISVL 54

Query: 77  KNGD--SDEASQVQEHTQLSSPCWEAYLKTEDSGESSKS-STVKDRRGCYKRRKCAESWT 133
              +  S  +S        ++ C +   K EDSG+S K    VK +RGCYKR+K +E+ T
Sbjct: 55  DTFEPISSSSSLAAVEGSQNASC-DNDGKFEDSGDSRKRLGPVKGKRGCYKRKKRSETCT 113

Query: 134 EHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTT 193
             S T+ +D  +WRKYGQK ILNA+FPR+YFRCTHK+ QGC+A+KQVQ+++ EP +   T
Sbjct: 114 IES-TILEDAFSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSIT 172

Query: 194 YYGRHTCKS 202
           Y G HTC +
Sbjct: 173 YIGNHTCNT 181

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU8|WRK54_ARATH Probable WRKY transcription factor 54 OS=Arabidopsis thaliana GN=WRKY54 PE=2 SV=2

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 22/201 (10%)

Query: 21  RRRAIEELIKGQEMALQLRNLI-HTSTKKGEGSKAMIINQ------------DLVANILS 67
           +R+ +++L++G E A QL+ L+ H  + +    +  +++             +L++ IL 
Sbjct: 12  KRKVVDQLVEGYEFATQLQLLLSHQHSNQYHIDETRLVSGSGSVSGGPDPVDELMSKILG 71

Query: 68  SFTNSLSILKNGDSDEAS-QVQEHTQLSSPCWE-----AYLKTEDSGESSKS--STVKDR 119
           SF  ++S+L + D    S  +      ++ C +           DSGES K      K +
Sbjct: 72  SFHKTISVLDSFDPVAVSVPIAVEGSWNASCGDDSATPVSCNGGDSGESKKKRLGVGKGK 131

Query: 120 RGCYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQ 179
           RGCY R+  + +    + + ++D +AWRKYGQK ILN  FPR+YFRCTHK  QGC+A+KQ
Sbjct: 132 RGCYTRKTRSHTRIVEAKS-SEDRYAWRKYGQKEILNTTFPRSYFRCTHKPTQGCKATKQ 190

Query: 180 VQRIQEEPPLHRTTYYGRHTC 200
           VQ+  ++  + + TY G HTC
Sbjct: 191 VQKQDQDSEMFQITYIGYHTC 211

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZV6|WRK62_ARATH Probable WRKY transcription factor 62 OS=Arabidopsis thaliana GN=WRKY62 PE=1 SV=2

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 34/241 (14%)

Query: 21  RRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNGD 80
           +++A+E+L+ G   A QL  LI   T+    S + +  +DL  ++L  F+++LSIL + +
Sbjct: 5   QQKAMEKLLHGHGCANQL--LIMDQTE----SDSSMEREDLAKSVLHCFSDALSILIDTN 58

Query: 81  SDEASQVQEHT-QLSSPCWEAYLKTEDSGESSKSSTVKDRRGCYKRRKCAESWTEH---- 135
             +  Q    + Q SSP  E+            S     +RG  ++   AES   H    
Sbjct: 59  DHQDDQSNNSSPQDSSPVLES------------SRKPLHKRG--RKTSMAESSDYHRHES 104

Query: 136 SSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYY 195
           S+ +  DG  WRKYGQK I  + + R+Y++C +  DQ C+A KQVQ+IQ  PPL+ TTY+
Sbjct: 105 STPIYHDGFLWRKYGQKQIKESEYQRSYYKCAYTKDQNCEAKKQVQKIQHNPPLYSTTYF 164

Query: 196 GRHTCKSLIKSSQLMLDSTTSDQ---CPMISFGSAHITEKDFNPFLSSFPSIKQESNKDD 252
           G+H C+     +   +D++  ++     MI FG  +I+      F SS  +++Q  N  D
Sbjct: 165 GQHICQLHQAYATFPIDTSDFEEHEGSHMIRFGHPNIS------FSSSTSNLRQHQNHQD 218

Query: 253 Q 253
           +
Sbjct: 219 R 219

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWF1|WRK38_ARATH Probable WRKY transcription factor 38 OS=Arabidopsis thaliana GN=WRKY38 PE=1 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 27/226 (11%)

Query: 15  LENSSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLS 74
           +E +S   +A++ +  G   A++L+  ++     G      + + DL  +I+ SF+N++S
Sbjct: 1   MEMNSPHEKAVQAIRYGHSCAMRLKRRLNHPMADG----GPLSSYDLAKSIVESFSNAIS 56

Query: 75  ILKNGDSDEASQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRGCYKRRKCAESWTE 134
           IL       A    E  Q S       L + DS    + S  K R+        +E+W +
Sbjct: 57  IL------SAKPETEDDQFSD------LSSRDSSPPPQGSPSKKRK--IDSTNSSENWRD 102

Query: 135 HS-STLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTT 193
            S   +  DG+ WRKYGQK I  +   R+Y+RC++  D  C+A K  Q+I++ PP++RTT
Sbjct: 103 DSPDPIYYDGYLWRKYGQKSIKKSNHQRSYYRCSYNKDHNCEARKHEQKIKDNPPVYRTT 162

Query: 194 YYGRHTCK------SLIKSSQLMLDSTTSDQCPMISFGSAHITEKD 233
           Y+G HTCK      ++  + Q  LD   S Q  MI FG     EK+
Sbjct: 163 YFGHHTCKTEHNLDAIFIAGQDPLDDFKSTQ--MIRFGKDQDQEKE 206

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV7|WRK67_ARATH Probable WRKY transcription factor 67 OS=Arabidopsis thaliana GN=WRKY67 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 130/274 (47%), Gaps = 47/274 (17%)

Query: 23  RAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNGDSD 82
           +A+E L++GQ  A  L+ L+    + GE S   +  + L+  IL SF+ +LS +      
Sbjct: 8   KAMEALLRGQGCANNLKILL----ENGEISS--VSTEPLIHTILDSFSLALSFM------ 55

Query: 83  EASQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRGCYKRRKC-AESWTEHS----S 137
                       SP    Y ++     +S  S    ++  ++R+ C AE    ++    +
Sbjct: 56  -----------DSPNHPPYHESSSHNMASHMSRRSSKQVQHRRKLCVAEGLVNYNHDSRT 104

Query: 138 TLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGR 197
              +DG  WRKYGQK I  +   R Y+RCT+  DQ C A+K+VQ+I++ PP++RTTY G+
Sbjct: 105 MCPNDGFTWRKYGQKTIKASAHKRCYYRCTYAKDQNCNATKRVQKIKDNPPVYRTTYLGK 164

Query: 198 HTCKSLIKSSQLMLDSTTSDQCPMISFGSAHITEKDFNPFLSSFPSIKQESNKDDQGPLS 257
           H CK+       + D T S    MI F    + E    P +    +I  +    ++   +
Sbjct: 165 HVCKAF-----AVHDDTYSST--MIRFDQV-VPE----PIMPQLTTIDHQVITVEENS-A 211

Query: 258 DMTHNQSSSSDEYLVSHD------FPAFESNEHM 285
           +   NQ    ++YLV  D      FP F S++ M
Sbjct: 212 EHIMNQECDINDYLVDDDPFWASQFPPFPSSDTM 245

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKD9|WRK46_ARATH Probable WRKY transcription factor 46 OS=Arabidopsis thaliana GN=WRKY46 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 43/229 (18%)

Query: 20  DRRRAIEELIKGQEMALQL-RNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKN 78
           + +  I EL  G+E+A +L  NL HTS+           N+ L+++IL  + N++ +L  
Sbjct: 4   EEKLVINELELGKELANRLMNNLKHTSSVDS--------NKTLISDILRIYQNAIFML-- 53

Query: 79  GDSDEASQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRGCYKRRKCAESWTEHSST 138
                                ++ + ++  + S     KD +  +K+RK +E  TE    
Sbjct: 54  ---------------------SFNQDKNILKRSLEIDGKDSKNVFKKRKVSEKNTEKVKV 92

Query: 139 LT---------DDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPL 189
                      DDGH WRKYGQK I  ++ PR Y+RCTH+F Q C A KQVQ+   +P L
Sbjct: 93  FVATEQENGSIDDGHCWRKYGQKEIHGSKNPRAYYRCTHRFTQDCLAVKQVQKSDTDPSL 152

Query: 190 HRTTYYGRHTCKSLIKSSQLMLDSTTSDQCPMISFGSAHITEK--DFNP 236
               Y G HTC ++         S +     +      H+TE+  D  P
Sbjct: 153 FEVKYLGNHTCNNITSPKTTTNFSVSLTNTNIFEGNRVHVTEQSEDMKP 201

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C557|WRK64_ARATH Probable WRKY transcription factor 64 OS=Arabidopsis thaliana GN=WRKY64 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 93/181 (51%), Gaps = 25/181 (13%)

Query: 24  AIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNGDSDE 83
           A+  L++GQ  A  L+ L+       + ++       L+  IL+SF+ +LS +     D 
Sbjct: 9   AVAALLRGQGCANSLKRLLENHKLSSDSTEP------LIYTILNSFSLALSFV-----DP 57

Query: 84  ASQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRGCYKRRKCAESWTEHSSTL-TDD 142
            S +        P  E+ L+   S    +SS  K     Y   +  E + + S T   DD
Sbjct: 58  PSLL--------PHNESSLQNMTSHVLQRSSKKK-----YYGAEDLEYYRDESPTPRPDD 104

Query: 143 GHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKS 202
           G  WRKYGQK I  + + R Y+RCT+  DQ C A K+VQ IQ+ PP++RTTY G+H CK+
Sbjct: 105 GFTWRKYGQKTIKTSPYQRCYYRCTYAKDQNCNARKRVQMIQDNPPVYRTTYLGKHVCKA 164

Query: 203 L 203
           +
Sbjct: 165 V 165

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H0Y8|WRK41_ARATH Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 92/199 (46%), Gaps = 15/199 (7%)

Query: 20  DRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNG 79
           +RR  + ELI G + A QL+     S           I ++L+ NI+SSF  ++ +L NG
Sbjct: 7   ERRSLLNELIHGLKAAKQLQGSSSPSLSASSSYLTTEIKENLLHNIVSSFKKAILML-NG 65

Query: 80  DSDEASQVQEHTQ------LSSPCWEAYLKTEDSGESSKSSTVKDRRGCYKRRKCAESWT 133
            + + +   E            P   A +      E   +   K+     K+RK    WT
Sbjct: 66  STTQHNPTIELAPDPLAHPGKVPGSPASITGNPRSEEFFNVRSKEFNLSSKKRKMLPKWT 125

Query: 134 EHSSTLT--------DDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQE 185
           E              DD  +WRKYGQK IL A+FPR+Y+RCT +  Q C A+KQVQR   
Sbjct: 126 EQVRISPERGLEGPHDDIFSWRKYGQKDILGAKFPRSYYRCTFRNTQYCWATKQVQRSDG 185

Query: 186 EPPLHRTTYYGRHTCKSLI 204
           +P +   TY G HTC   I
Sbjct: 186 DPTIFEVTYRGTHTCSQGI 204

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHB5|WRK55_ARATH WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 104 TEDSGESSKSSTVKDRR---GCYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFP 160
            E SG S  S+  + RR   G  +    A   T ++    DD H WRKYGQK IL +RFP
Sbjct: 133 VERSGASGSSTPRQRRRKDEGEEQTVLVAALRTGNTDLPPDDNHTWRKYGQKEILGSRFP 192

Query: 161 RNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSLIKSSQLMLDSTTSDQCP 220
           R Y+RCTH+    C A KQVQR+ ++P   R TY G HTC     S+     S T    P
Sbjct: 193 RAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSHTC---YNSTAPTASSATPSTIP 249

Query: 221 MISFGSAH 228
           + S  + H
Sbjct: 250 ISSVTTGH 257

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6H5|WRK63_ARATH Probable WRKY transcription factor 63 OS=Arabidopsis thaliana GN=WRKY63 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 46/63 (73%)

Query: 141 DDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTC 200
           DDG  WRKYGQK I  + + R Y+RC +  DQ C A+K+VQ IQ+ PP++RTTY G+HTC
Sbjct: 103 DDGFTWRKYGQKTIKTSLYQRCYYRCAYAKDQNCYATKRVQMIQDSPPVYRTTYLGQHTC 162

Query: 201 KSL 203
           K+ 
Sbjct: 163 KAF 165

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
224091122	333	predicted protein [Populus trichocarpa]	0.932	0.918	0.5	1e-77
224140611	321	predicted protein [Populus trichocarpa]	0.914	0.934	0.529	1e-74
297735534	331	unnamed protein product [Vitis vinifera]	0.823	0.815	0.493	7e-68
225439707	322	PREDICTED: probable WRKY transcription f	0.887	0.903	0.507	7e-67
147828310	719	hypothetical protein VITISV_015394 [Viti	0.887	0.404	0.501	4e-66
255575594	330	WRKY transcription factor, putative [Ric	0.893	0.887	0.462	5e-66
263199372	322	WRKY transcription factor [Vitis pseudor	0.902	0.919	0.483	1e-64
163914205	291	hypothetical protein [Vitis hybrid culti	0.847	0.955	0.495	5e-60
351725863	299	transcription factor [Glycine max] gi|16	0.783	0.859	0.474	4e-56
255647162	299	unknown [Glycine max]	0.783	0.859	0.467	4e-55

>gi|224091122|ref|XP_002309186.1| predicted protein [Populus trichocarpa] gi|222855162|gb|EEE92709.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 170/340 (50%), Positives = 231/340 (67%), Gaps = 34/340 (10%)

Query: 12  SSWLEN-SSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFT 70
           SSW EN  S R++ I+EL++GQE+A +L+ ++  ST    G+   +  ++LV  I++SF 
Sbjct: 3   SSWPENLPSHRKKVIDELLRGQEIAKKLKFVMSKST----GNDGSMSAENLVREIMNSFN 58

Query: 71  NSLSILKNGD-SDEASQVQEHTQLSSPCWEAYLKTEDSGESSKSST---VKDRRGCYKRR 126
           ++LSIL  G   D+ SQ    T++ SP W+    +EDSGESSKS+    VKDRRGCYKRR
Sbjct: 59  STLSILNGGGYDDDVSQTPATTKVCSPLWDGRKSSEDSGESSKSTATVKVKDRRGCYKRR 118

Query: 127 KCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEE 186
           + + SWT  +STLTDDGHAWRKYGQK+ILNA+FPRNY+RCTHKFDQ CQA+KQVQR+++E
Sbjct: 119 RSSHSWTNETSTLTDDGHAWRKYGQKMILNAKFPRNYYRCTHKFDQHCQATKQVQRVEDE 178

Query: 187 PPLHRTTYYGRHTCKSLIKSS-QLMLDSTT---SDQCPMISFGSA-----HITEKDFNPF 237
           PPL+RTTY+G HTCK+L+K+S Q +LD      +D   ++SF ++      +T K  +PF
Sbjct: 179 PPLYRTTYHGYHTCKNLLKASDQFVLDPIDHFHTDSSTLLSFNNSSNHHQMMTNKQNHPF 238

Query: 238 L-SSFPSIKQE--SNKDDQGPLSDMT-HNQSSSSDEYLVSHDFPAFESNEHMKVLSSDHG 293
             +SF SIKQE  + +D+  P  D T HN  + S +YL+  D       +H ++ + DHG
Sbjct: 239 FTTSFQSIKQEYYNKEDNDMPGYDPTIHNNQALSSDYLLPTD-------DHDRISTFDHG 291

Query: 294 DVISGVNSSCTASAHSLDLAVDM--SVNF---DDVLEFNF 328
           D+ISGVNSSCT S+HSLD+   M  SV F    DVL F F
Sbjct: 292 DLISGVNSSCTTSSHSLDIDSIMAESVGFGDGGDVLGFEF 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140611|ref|XP_002323675.1| predicted protein [Populus trichocarpa] gi|222868305|gb|EEF05436.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 178/336 (52%), Positives = 230/336 (68%), Gaps = 36/336 (10%)

Query: 12  SSWLEN-SSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFT 70
           SSW  N  ++R++AI+EL++GQE+A QL+ +++ S     G    +  +DLV  I++SF 
Sbjct: 3   SSWHGNLPANRKKAIDELVRGQEIAAQLKLVMNKSI----GVDESVFAEDLVKKIMNSFN 58

Query: 71  NSLSILKNGDSDE-ASQVQEHTQLSSPCWEAYLKTEDSGESSKSST---VKDRRGCYKRR 126
           +SL IL  G+ DE ASQ+    Q+ SPCW+    ++DSGES + +    VKDRRGCYKRR
Sbjct: 59  SSLYILNGGEFDEVASQI---PQVGSPCWDGRKSSKDSGESGRGTAELKVKDRRGCYKRR 115

Query: 127 KCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEE 186
           K + S T+ S+TLTDDGHAWRKYGQKVILNA++PRNYFRCTHK+DQ CQA KQVQRIQEE
Sbjct: 116 KSSHSRTDDSTTLTDDGHAWRKYGQKVILNAKYPRNYFRCTHKYDQQCQAIKQVQRIQEE 175

Query: 187 PPLHRTTYYGRHTCKSLIKSSQLMLDSTTS---DQCPMISFGSA--HITEKDFNPFLSSF 241
           PPL+RTTYYG HTCK+L+K+SQ +LD +     D   +ISF S   H + K  N  L+SF
Sbjct: 176 PPLYRTTYYGHHTCKNLLKASQFVLDPSDHHDIDSSILISFNSNGDHASNKPSNSLLTSF 235

Query: 242 PSIKQES--NKDDQG-PLS-DMT---HNQSSSSDEYLVSHDFPAFESNEHMKVLSSDHGD 294
            ++KQE    +DD   P+S D T   +NQ+SSSD YL+S D       ++M     DHGD
Sbjct: 236 QTVKQECCHKEDDMNIPISYDPTTQYNNQASSSD-YLLSPD-------DYMSAF--DHGD 285

Query: 295 VISGVNSSCTASAHSLDLAVDM--SVNFDDVLEFNF 328
           VISGVNSSCT S+HSLD+   M  S +FDD   F F
Sbjct: 286 VISGVNSSCTTSSHSLDMDGIMMESADFDDDGVFGF 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735534|emb|CBI18028.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (673), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 154/312 (49%), Positives = 199/312 (63%), Gaps = 42/312 (13%)

Query: 4   EAGQATSSSSWLEN-SSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLV 62
           +A  +T   +W E  S DR+RAI+EL++G+    QLR+++        G       QDL+
Sbjct: 41  DATMSTMECTWSEKISGDRKRAIDELLRGRSFTKQLRSVLL-------GGDQQESAQDLL 93

Query: 63  ANILSSFTNSLSILKNGDSDEA-SQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRG 121
             I  SFT++LSIL +G+SDEA SQ+    QL SP W    ++E+S ES KSST KDRRG
Sbjct: 94  VKISRSFTDTLSILNSGESDEAVSQIPASGQLYSPGWHGR-RSEESCESGKSST-KDRRG 151

Query: 122 CYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQ 181
           CYKRRK ++SW   +    DDG+AWRKYGQKVILNA+  R+Y+RCTHK DQGC A+KQVQ
Sbjct: 152 CYKRRKNSQSWIRITPNFHDDGYAWRKYGQKVILNAKHQRSYYRCTHKHDQGCMATKQVQ 211

Query: 182 RIQEEPPLHRTTYYGRHTCKSLIKSSQLMLD-STTSDQCPMISFGSAHITEKDFNPFLSS 240
             +EEPP+++TTY+G+HTCKS++KSSQ+M++ ST  D   ++SF S +  + D N F SS
Sbjct: 212 MTEEEPPMYKTTYHGQHTCKSMLKSSQIMVENSTARDSSILLSFESNN--QDDSNAFFSS 269

Query: 241 FPSIKQESN--KDDQGPLSDMTHNQSSSSDEYLVSHDFPAFESNEHMKVLSSDHGDVISG 298
           FP IKQE     DDQ                     +   FESN     L SDHGDV+SG
Sbjct: 270 FPLIKQEEEIPNDDQ---------------------ELTTFESN-----LGSDHGDVLSG 303

Query: 299 VNSSCTASAHSL 310
           VNSSCT S HSL
Sbjct: 304 VNSSCTDSTHSL 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439707|ref|XP_002272504.1| PREDICTED: probable WRKY transcription factor 70-like [Vitis vinifera]

 Score =  260 bits (664), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 161/317 (50%), Positives = 211/317 (66%), Gaps = 26/317 (8%)

Query: 4   EAGQATSSSSWLEN-SSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLV 62
           +A  +T   +W E  S DR+RAI+EL++G+    QLR+++        G       QDL+
Sbjct: 6   DATMSTMECTWSEKISGDRKRAIDELLRGRSFTKQLRSVLL-------GGDQQESAQDLL 58

Query: 63  ANILSSFTNSLSILKNGDSDEA-SQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRG 121
             I  SFT++LSIL +G+SDEA SQ+    QL SP W    ++E+S ES KSST KDRRG
Sbjct: 59  VKISRSFTDTLSILNSGESDEAVSQIPASGQLYSPGWHGR-RSEESCESGKSST-KDRRG 116

Query: 122 CYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQ 181
           CYKRRK ++SW   +    DDG+AWRKYGQKVILNA+  R+Y+RCTHK DQGC A+KQVQ
Sbjct: 117 CYKRRKNSQSWIRITPNFHDDGYAWRKYGQKVILNAKHQRSYYRCTHKHDQGCMATKQVQ 176

Query: 182 RIQEEPPLHRTTYYGRHTCKSLIKSSQLMLD-STTSDQCPMISFGSAHITEKDFNPFLSS 240
             +EEPP+++TTY+G+HTCKS++KSSQ+M++ ST  D   ++SF S +  + D N F SS
Sbjct: 177 MTEEEPPMYKTTYHGQHTCKSMLKSSQIMVENSTARDSSILLSFESNN--QDDSNAFFSS 234

Query: 241 FPSIKQESN--KDDQ-----GPLSDMTHNQSSSSDEYLVSHDFPAFESNEHMKVLSSDHG 293
           FP IKQE     DDQ        ++   N +SSS +YL+S +   FESN     L SDHG
Sbjct: 235 FPLIKQEEEIPNDDQEVTYNNHTNNNNKNNNSSSSDYLLSLELTTFESN-----LGSDHG 289

Query: 294 DVISGVNSSCTASAHSL 310
           DV+SGVNSSCT S HSL
Sbjct: 290 DVLSGVNSSCTDSTHSL 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828310|emb|CAN66487.1| hypothetical protein VITISV_015394 [Vitis vinifera]

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 159/317 (50%), Positives = 211/317 (66%), Gaps = 26/317 (8%)

Query: 4   EAGQATSSSSWLEN-SSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLV 62
           +A  +T   +W E  S DR+RAI+EL++G+    QLR+++    ++          QDL+
Sbjct: 403 DATMSTMECTWSEKISGDRKRAIDELLRGRSFTKQLRSVLLGGXQQES-------XQDLL 455

Query: 63  ANILSSFTNSLSILKNGDSDE-ASQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRG 121
             I  SFT++LSIL +G+SDE  SQ+    QL SP W    ++E+S ES KSST KDRRG
Sbjct: 456 XKIXRSFTDTLSILNSGESDEXVSQIPASGQLYSPGWHGR-RSEESCESGKSST-KDRRG 513

Query: 122 CYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQ 181
           CYKRRK ++SW   +    DDG+AWRKYGQKVILNA+  R+Y+RCTHK DQGC A+KQVQ
Sbjct: 514 CYKRRKNSQSWIRITPNFHDDGYAWRKYGQKVILNAKHQRSYYRCTHKHDQGCMATKQVQ 573

Query: 182 RIQEEPPLHRTTYYGRHTCKSLIKSSQLMLD-STTSDQCPMISFGSAHITEKDFNPFLSS 240
             +EEPP+++TTY+G+HTCKS++KSSQ+M++ ST  D   ++SF S +  + D N F SS
Sbjct: 574 MTEEEPPMYKTTYHGQHTCKSMLKSSQIMVENSTARDSSILLSFESNN--QDDSNAFFSS 631

Query: 241 FPSIKQESN--KDDQ-----GPLSDMTHNQSSSSDEYLVSHDFPAFESNEHMKVLSSDHG 293
           FP IKQE     DDQ        ++   N +SSS +YL+S +   FESN     L SDHG
Sbjct: 632 FPLIKQEEEIPNDDQEVTYNNHTNNNNKNNNSSSSDYLLSLELTTFESN-----LGSDHG 686

Query: 294 DVISGVNSSCTASAHSL 310
           DV+SGVNSSCT S HSL
Sbjct: 687 DVLSGVNSSCTDSTHSL 703

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575594|ref|XP_002528697.1| WRKY transcription factor, putative [Ricinus communis] gi|223531869|gb|EEF33686.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 156/337 (46%), Positives = 208/337 (61%), Gaps = 44/337 (13%)

Query: 19  SDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKN 78
           S +RRAI ELI+G+E+A QL+ ++++     E         DLV  IL+SFTNSLSIL  
Sbjct: 11  STQRRAIGELIRGRELARQLKIVLNSRDDMEEHVPV----DDLVMKILNSFTNSLSILNR 66

Query: 79  GDSDEASQVQEHTQLSSPCWEAYLKTEDSGESSKS-STVKDRRGCYKRRKCAESWTEHSS 137
            DSD   +    T + SPCW++  K+EDSGES +S ST KDRRGCYKRRK + +    +S
Sbjct: 67  FDSD--IEFPPSTHVGSPCWDSGRKSEDSGESIRSTSTNKDRRGCYKRRKISNALIRETS 124

Query: 138 TLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGR 197
            L DDGHAWRKYGQKVILN +FPRNYFRCTHK+DQGCQA+KQVQ+I+E+PP +RTTYYG 
Sbjct: 125 DLIDDGHAWRKYGQKVILNTKFPRNYFRCTHKYDQGCQATKQVQKIEEDPPKYRTTYYGN 184

Query: 198 HTCKSLIKSSQLMLDSTTSDQCPMISFGSAH---ITEKDFNPFLS---SFPSIKQE---- 247
           HTCK+L+K+S  ++  +  D   ++SF + +   IT K  +PFL+   S  SIKQE    
Sbjct: 185 HTCKNLLKASHHLILESPDDSSILLSFNTTNDSIITSKQDSPFLTSFSSSSSIKQEYKDE 244

Query: 248 -SNKDDQGPLSDMTH------NQSSSSDEYLVSHDFPAFESNEHMKVLSSDHGDVISGVN 300
            ++ +    + ++ H      NQSSS+D  L   D  A            DH DVISGVN
Sbjct: 245 LAHGNSDNDMINIIHNNSIMNNQSSSTDYLLAPDDLSAL-----------DHADVISGVN 293

Query: 301 SSCTASAHS---LDLAVD------MSVNFDDVLEFNF 328
           SS   ++     +D+ V        + + DDVL + F
Sbjct: 294 SSSCTTSTHSFDMDMIVSSVGHACFAADDDDVLPYAF 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|263199372|gb|ACY69975.1| WRKY transcription factor [Vitis pseudoreticulata]

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 151/312 (48%), Positives = 202/312 (64%), Gaps = 16/312 (5%)

Query: 4   EAGQATSSSSWLEN-SSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLV 62
           +A  +T   +W E  S DR+RAI+EL++G+    QLR+++        G       QDL+
Sbjct: 6   DATMSTMECTWSEKISGDRKRAIDELLRGRSFTKQLRSVL-------VGGDQQESAQDLL 58

Query: 63  ANILSSFTNSLSILKNGDSDEA-SQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRG 121
           A IL SF ++LSIL +G+S+E  SQ+    QL SP W    ++E+S ES KSST KDRRG
Sbjct: 59  AKILRSFNDTLSILNSGESNEVVSQIPASGQLYSPGWHGR-RSEESCESGKSST-KDRRG 116

Query: 122 CYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQ 181
           CYKRRK ++S    +    DDG+AWRKYGQKVILNA+  R+Y+RCTHK DQGC A+KQVQ
Sbjct: 117 CYKRRKNSQSLIRITPNFHDDGYAWRKYGQKVILNAKHQRSYYRCTHKHDQGCMATKQVQ 176

Query: 182 RIQEEPPLHRTTYYGRHTCKSLIKSSQLMLD-STTSDQCPMISFGSAHITEKDFNPFLSS 240
             +EEPP+++TTY+G+HTCKS++KSSQ+M++ ST  D   ++SF S +  + D N F SS
Sbjct: 177 MTEEEPPMYKTTYHGQHTCKSMLKSSQIMVENSTARDSSILLSFESNN--QDDSNAFFSS 234

Query: 241 FPSIKQESN--KDDQGPLSDMTHNQSSSSDEYLVSHDFPAFESNEHMKVLSSDHGDVISG 298
           FP IKQE     DDQ    +   N ++ ++    S    + E       L SDHGDV+SG
Sbjct: 235 FPLIKQEEEIPNDDQEVTYNNHTNNNNKNNNSSSSDYLLSLELTTSESNLGSDHGDVLSG 294

Query: 299 VNSSCTASAHSL 310
           VNSSCT S HSL
Sbjct: 295 VNSSCTDSTHSL 306

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|163914205|dbj|BAF95871.1| hypothetical protein [Vitis hybrid cultivar]

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 151/305 (49%), Positives = 197/305 (64%), Gaps = 27/305 (8%)

Query: 28  LIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNGDSDEA-SQ 86
           L +G+    QLR+++        G       Q+L+A IL SFT++LSIL +G SDEA SQ
Sbjct: 1   LRRGRSFTKQLRSVL-------VGGDQQESAQNLLAKILRSFTDTLSILNSGQSDEAVSQ 53

Query: 87  VQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRGCYKRRKCAESWTEHSSTLTDDGHAW 146
           +    Q  SP W    ++E+S ES KSST KDRRGCYKRRK ++SW   +    DDG+AW
Sbjct: 54  IPTSGQPYSPGWHG-RRSEESCESGKSST-KDRRGCYKRRKSSQSWIRITPNFHDDGYAW 111

Query: 147 RKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSLIKS 206
           RKYGQKVILNA+  R+Y+RCTHK DQGC A+KQVQ  ++EPP ++TTY+G+HTCKS++KS
Sbjct: 112 RKYGQKVILNAKHQRSYYRCTHKHDQGCTATKQVQMTEDEPPKYKTTYHGQHTCKSMLKS 171

Query: 207 SQLMLD-STTSDQCPMISFGSAHITEKDFNPFLSSFPSIKQESN--KDDQ----GPLSDM 259
           SQ+M++ ST  D   ++SF S +  + D N F SSFP IKQE     DDQ       ++ 
Sbjct: 172 SQIMVENSTARDSSFLLSFESNN--QDDSNAFSSSFPLIKQEEEIPNDDQEVTYNNHTNN 229

Query: 260 THNQSSSSDEYLVSHDFPAFESNEHMKVLSSDHGDVISGVNSSCTASAHSLDLAVDMSVN 319
            +   S S +YL+S +   FESN     L SDHGDV+SGVNSSCT S HSLD    M ++
Sbjct: 230 NNRTHSLSSDYLLSLELTTFESN-----LGSDHGDVLSGVNSSCTDSTHSLD---GMMMD 281

Query: 320 FDDVL 324
            D  L
Sbjct: 282 VDGFL 286

Source: Vitis hybrid cultivar

Species: Vitis hybrid cultivar

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725863|ref|NP_001237619.1| transcription factor [Glycine max] gi|166203242|gb|ABY84661.1| transcription factor [Glycine max]

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 131/276 (47%), Positives = 172/276 (62%), Gaps = 19/276 (6%)

Query: 19  SDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKN 78
           S RR+AIEEL++G++ A QLR++I+ S + G  +      Q LV  +L SFTNSLS LKN
Sbjct: 7   SSRRKAIEELLRGRDCAKQLRSVINGSCEDGSSTTPSFAEQ-LVKEVLMSFTNSLSFLKN 65

Query: 79  GDSDEASQVQEHTQLSSPCWEAYLKTEDSGESS-KSSTVKDRRGCYKRRKCAESWTEHSS 137
             + E+  V       SP      K+EDS ES+ KSS +K+RRGCYKRR+  ++W + S 
Sbjct: 66  NPTSESHDVSNVQVCESP------KSEDSQESNCKSSIIKERRGCYKRRRTEQTWEKESE 119

Query: 138 TLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGR 197
              DDGH WRKYGQK IL+A+FPRNY+RCTHKFDQGCQA+KQVQR+QEEP L++TTYYG 
Sbjct: 120 APIDDGHQWRKYGQKEILSAKFPRNYYRCTHKFDQGCQATKQVQRVQEEPILYKTTYYGL 179

Query: 198 HTCKSLIKSSQLMLDSTTSDQCPMISFGSAHITE-KDFNPFLSS--FPSIKQESNKDDQG 254
           HTCK+L     ++   + S     +SF ++  T  K   PFLSS   PS  +   K++  
Sbjct: 180 HTCKNLANPEIILDPMSPSSSSKFLSFDNSFPTPSKQECPFLSSSNLPSSVKGECKEEVP 239

Query: 255 PLSDMTHNQSSSSDEYLVSHDFPAFESNEHMKVLSS 290
           P        S+SS+ YL+S D     S  H   LSS
Sbjct: 240 P--------STSSNHYLISSDLTFDSSPRHHVTLSS 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647162|gb|ACU24049.1| unknown [Glycine max]

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 129/276 (46%), Positives = 170/276 (61%), Gaps = 19/276 (6%)

Query: 19  SDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKN 78
           S RR+AIEEL++G++ A QLR++I+ S + G  +      Q LV  +L SFTNSLS LKN
Sbjct: 7   SSRRKAIEELLRGRDCAKQLRSVINGSCEDGSSTTPSFAEQ-LVKEVLMSFTNSLSFLKN 65

Query: 79  GDSDEASQVQEHTQLSSPCWEAYLKTEDSGESS-KSSTVKDRRGCYKRRKCAESWTEHSS 137
             + E+  V       SP      K+EDS ES+ KSS +K+RRGCYKRR+  ++W + S 
Sbjct: 66  NPTSESHDVSNVQVCESP------KSEDSQESNCKSSIIKERRGCYKRRRTEQTWEKESE 119

Query: 138 TLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGR 197
              DDGH WRKYGQK IL+A+FPRNY+RCTHKFDQGCQA+KQVQR+QEEP L++TTYYG 
Sbjct: 120 APIDDGHQWRKYGQKEILSAKFPRNYYRCTHKFDQGCQATKQVQRVQEEPILYKTTYYGL 179

Query: 198 HTCKSLIKSSQLMLDSTTSDQCPMISFGSAHITE-KDFNPFLSS--FPSIKQESNKDDQG 254
           HTCK+L     ++   + S     +SF ++  T  K   PFLSS   PS  +   K++  
Sbjct: 180 HTCKNLANPEIILDPMSPSSSSKFLSFDNSFPTPSKQECPFLSSSNLPSSVKGECKEEVP 239

Query: 255 PLSDMTHNQSSSSDEYLVSHDFPAFESNEHMKVLSS 290
           P        S+SS+ Y +  D     S  H   LSS
Sbjct: 240 P--------STSSNHYFIFFDLTFDSSPRHHVTLSS 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2102539	294	WRKY70 "WRKY DNA-binding prote	0.646	0.721	0.389	2.4e-37
TAIR|locus:2181052	263	WRKY62 "WRKY DNA-binding prote	0.646	0.806	0.326	6.8e-24
TAIR|locus:2028952	249	WRKY64 "WRKY DNA-binding prote	0.448	0.590	0.352	3.4e-23
TAIR|locus:2064806	346	WRKY54 "WRKY DNA-binding prote	0.676	0.641	0.308	3.8e-23
TAIR|locus:2171157	289	WRKY38 "WRKY DNA-binding prote	0.734	0.833	0.304	7e-22
TAIR|locus:2028962	254	WRKY67 "WRKY DNA-binding prote	0.490	0.633	0.342	1.9e-19
TAIR|locus:2136093	313	WRKY41 [Arabidopsis thaliana (	0.548	0.575	0.338	1.9e-19
TAIR|locus:2039119	295	WRKY46 "WRKY DNA-binding prote	0.817	0.908	0.244	3.1e-19
TAIR|locus:2064816	292	WRKY55 "WRKY DNA-binding prote	0.365	0.410	0.421	2.8e-18
TAIR|locus:2195165	241	ABO3 "ABA overly sensitive mut	0.405	0.551	0.342	1e-17

TAIR|locus:2102539 WRKY70 "WRKY DNA-binding protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 92/236 (38%), Positives = 139/236 (58%)

Query:    17 NSSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSIL 76
             N + + + + +L++G ++  QL+ L+   ++ G G       +DLVA IL  F N++S+L
Sbjct:     4 NKAKKLKVMNQLVEGHDLTTQLQQLL---SQPGSGL------EDLVAKILVCFNNTISVL 54

Query:    77 KNGD--SDEASQVQEHTQLSSPCWEAYLKTEDSGESSKS-STVKDRRGCYKRRKCAESWT 133
                +  S  +S        ++ C +   K EDSG+S K    VK +RGCYKR+K +E+ T
Sbjct:    55 DTFEPISSSSSLAAVEGSQNASC-DNDGKFEDSGDSRKRLGPVKGKRGCYKRKKRSETCT 113

Query:   134 EHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTT 193
               S T+ +D  +WRKYGQK ILNA+FPR+YFRCTHK+ QGC+A+KQVQ+++ EP +   T
Sbjct:   114 IES-TILEDAFSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSIT 172

Query:   194 YYGRHTCKSLIKSSQLMLDSTTSDQCPMISFGSAHITEKDFNPFLSSFPSIKQESN 249
             Y G HTC +  ++ +    S T D    I   S    E   +P LS+  S+K+E N
Sbjct:   173 YIGNHTCNTNAETPK----SKTCDHHDEIFMDS----EDHKSPSLST--SMKEEDN 218

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;RCA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2181052 WRKY62 "WRKY DNA-binding protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 79/242 (32%), Positives = 125/242 (51%)

Query:    18 SSDRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSIL- 76
             +S +++A+E+L+ G   A QL  LI   T+    S + +  +DL  ++L  F+++LSIL 
Sbjct:     2 NSCQQKAMEKLLHGHGCANQL--LIMDQTE----SDSSMEREDLAKSVLHCFSDALSILI 55

Query:    77 -KNGDSDEASQVQEHTQLSSPCWEAYLKT-EDSGESSKSSTVKDRRGCYKRRKCAESWTE 134
               N   D+ S      Q SSP  E+  K     G  +  +   D    Y R        E
Sbjct:    56 DTNDHQDDQSN-NSSPQDSSPVLESSRKPLHKRGRKTSMAESSD----YHRH-------E 103

Query:   135 HSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTY 194
              S+ +  DG  WRKYGQK I  + + R+Y++C +  DQ C+A KQVQ+IQ  PPL+ TTY
Sbjct:   104 SSTPIYHDGFLWRKYGQKQIKESEYQRSYYKCAYTKDQNCEAKKQVQKIQHNPPLYSTTY 163

Query:   195 YGRHTCKSLIKSSQLMLDSTTSDQ---CPMISFGSAHITEKDFNPFLSSFPSIKQESNKD 251
             +G+H C+     +   +D++  ++     MI FG  +I+      F SS  +++Q  N  
Sbjct:   164 FGQHICQLHQAYATFPIDTSDFEEHEGSHMIRFGHPNIS------FSSSTSNLRQHQNHQ 217

Query:   252 DQ 253
             D+
Sbjct:   218 DR 219

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2028952 WRKY64 "WRKY DNA-binding protein 64" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 56/159 (35%), Positives = 80/159 (50%)

Query:   130 ESWTEHSST-LTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPP 188
             E + + S T   DDG  WRKYGQK I  + + R Y+RCT+  DQ C A K+VQ IQ+ PP
Sbjct:    91 EYYRDESPTPRPDDGFTWRKYGQKTIKTSPYQRCYYRCTYAKDQNCNARKRVQMIQDNPP 150

Query:   189 LHRTTYYGRHTCKSLIKSSQLMLDSTTSDQCPMISFGSAHITEKDFNPFLSSFP--SIKQ 246
             ++RTTY G+H CK++      + D T   +  MI F    +  +   P L++    +I  
Sbjct:   151 VYRTTYLGKHVCKAVA-----VHDDTYGSE--MIKFDQ--VVSESVMPQLATIDEQAITM 201

Query:   247 ESNKDDQGPLSDMTHNQSSSSDEYLVSHDFPAFESNEHM 285
             E    D     +   N  S  D+   +  FP F S + M
Sbjct:   202 EDEAIDHIMNQECDINDFSVDDDPFWASQFPPFSSEDIM 240

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2064806 WRKY54 "WRKY DNA-binding protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 76/246 (30%), Positives = 129/246 (52%)

Query:    60 DLVANILSSFTNSLSILKNGDSDEAS-QVQEHTQLSSPCWE-----AYLKTEDSGESSKS 113
             +L++ IL SF  ++S+L + D    S  +      ++ C +           DSGES K 
Sbjct:    64 ELMSKILGSFHKTISVLDSFDPVAVSVPIAVEGSWNASCGDDSATPVSCNGGDSGESKKK 123

Query:   114 --STVKDRRGCYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFD 171
                  K +RGCY R+  + +    + + ++D +AWRKYGQK ILN  FPR+YFRCTHK  
Sbjct:   124 RLGVGKGKRGCYTRKTRSHTRIVEAKS-SEDRYAWRKYGQKEILNTTFPRSYFRCTHKPT 182

Query:   172 QGCQASKQVQRIQEEPPLHRTTYYGRHTC----KSLIKSS----QLMLDST-TSDQCPMI 222
             QGC+A+KQVQ+  ++  + + TY G HTC    ++  K+     ++++DS  T       
Sbjct:   183 QGCKATKQVQKQDQDSEMFQITYIGYHTCTANDQTHAKTEPFDQEIIMDSEKTLAASTAQ 242

Query:   223 SFGSAHITEKDFNPF-LSSFPS--IKQESNKD-DQGPLSDMTHNQSSSSDEYLVSHDFPA 278
             +  +A + E++ N   +++  +  +K+E N + DQ    D     S+  D  LV  +   
Sbjct:   243 NHVNAMVQEQENNTSSVTAIDAGMVKEEQNNNGDQS--KDYYEGSSTGEDLSLVWQETMM 300

Query:   279 FESNEH 284
             F+ +++
Sbjct:   301 FDDHQN 306

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2171157 WRKY38 "WRKY DNA-binding protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 84/276 (30%), Positives = 127/276 (46%)

Query:    60 DLVANILSSFTNSLSILKNGDSDEASQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDR 119
             DL  +I+ SF+N++SIL       A    E  Q S       L + DS    + S  K R
Sbjct:    42 DLAKSIVESFSNAISILS------AKPETEDDQFSD------LSSRDSSPPPQGSPSKKR 89

Query:   120 RGCYKRRKCAESWTEHS-STLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASK 178
             +        +E+W + S   +  DG+ WRKYGQK I  +   R+Y+RC++  D  C+A K
Sbjct:    90 K--IDSTNSSENWRDDSPDPIYYDGYLWRKYGQKSIKKSNHQRSYYRCSYNKDHNCEARK 147

Query:   179 QVQRIQEEPPLHRTTYYGRHTCKS------LIKSSQLMLDSTTSDQCPMISFGSAHITEK 232
               Q+I++ PP++RTTY+G HTCK+      +  + Q  LD   S Q  MI FG     EK
Sbjct:   148 HEQKIKDNPPVYRTTYFGHHTCKTEHNLDAIFIAGQDPLDDFKSTQ--MIRFGKDQDQEK 205

Query:   233 DFNPFLSSFPSIKQESNKDDQGPLSDMTHNQSSSSDEYLVSHDFPAFESNEHMKVLSSDH 292
             +      S  S+K E          D+   Q+      + S+D    +  E  + LSS  
Sbjct:   206 ESRSNGFSL-SVKHEE---------DIIKEQAIDQYREITSNDQDCQDVIE--EYLSSPS 253

Query:   293 GDVISGVNSSCTASAHSLDLAVDMSVNFDDVLEFNF 328
             G      +S   ++  + DL  D   ++D   +F F
Sbjct:   254 GSYPPSSSSGSESADFNSDLLFDNPDSWDRYDQFYF 289

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;RCA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA;IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2028962 WRKY67 "WRKY DNA-binding protein 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 62/181 (34%), Positives = 95/181 (52%)

Query:    23 RAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNGDSD 82
             +A+E L++GQ  A  L+ L+    + GE S   +  + L+  IL SF+ +LS + + +  
Sbjct:     8 KAMEALLRGQGCANNLKILL----ENGEISS--VSTEPLIHTILDSFSLALSFMDSPNHP 61

Query:    83 EASQVQEHTQLSSPCWEAYLKTEDSGESSKSSTVKDRRGCYKRRKCAESWTEHSSTLT-D 141
                +   H   S            S  SSK   V+ RR          ++   S T+  +
Sbjct:    62 PYHESSSHNMASHM----------SRRSSKQ--VQHRRKLCVAEGLV-NYNHDSRTMCPN 108

Query:   142 DGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCK 201
             DG  WRKYGQK I  +   R Y+RCT+  DQ C A+K+VQ+I++ PP++RTTY G+H CK
Sbjct:   109 DGFTWRKYGQKTIKASAHKRCYYRCTYAKDQNCNATKRVQKIKDNPPVYRTTYLGKHVCK 168

Query:   202 S 202
             +
Sbjct:   169 A 169

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2136093 WRKY41 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 66/195 (33%), Positives = 95/195 (48%)

Query:    20 DRRRAIEELIKGQEMALQLRNLIHTSTKKGEGSKAMIINQDLVANILSSFTNSLSILKNG 79
             +RR  + ELI G + A QL+     S           I ++L+ NI+SSF  ++ +L NG
Sbjct:     7 ERRSLLNELIHGLKAAKQLQGSSSPSLSASSSYLTTEIKENLLHNIVSSFKKAILML-NG 65

Query:    80 DSDEASQVQEHTQ--LSSPCWEAYLKTEDSGE--SSKSSTVKDRRG--CYKRRKCAESWT 133
              + + +   E     L+ P          +G   S +   V+ +      K+RK    WT
Sbjct:    66 STTQHNPTIELAPDPLAHPGKVPGSPASITGNPRSEEFFNVRSKEFNLSSKKRKMLPKWT 125

Query:   134 EHSSTLTDDG----H----AWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQE 185
             E      + G    H    +WRKYGQK IL A+FPR+Y+RCT +  Q C A+KQVQR   
Sbjct:   126 EQVRISPERGLEGPHDDIFSWRKYGQKDILGAKFPRSYYRCTFRNTQYCWATKQVQRSDG 185

Query:   186 EPPLHRTTYYGRHTC 200
             +P +   TY G HTC
Sbjct:   186 DPTIFEVTYRGTHTC 200

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2039119 WRKY46 "WRKY DNA-binding protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 70/286 (24%), Positives = 122/286 (42%)

Query:    55 MIINQ-DLVANILSSFTNSLSILKNGDSDEASQVQEHTQLSSPCWEAYLKTEDSGESSKS 113
             ++IN+ +L   + +   N+L    + DS++ + + +  ++           +D     +S
Sbjct:     7 LVINELELGKELANRLMNNLKHTSSVDSNK-TLISDILRIYQNAIFMLSFNQDKNILKRS 65

Query:   114 STV--KDRRGCYKRRKCAESWTEHSSTLT---------DDGHAWRKYGQKVILNARFPRN 162
               +  KD +  +K+RK +E  TE               DDGH WRKYGQK I  ++ PR 
Sbjct:    66 LEIDGKDSKNVFKKRKVSEKNTEKVKVFVATEQENGSIDDGHCWRKYGQKEIHGSKNPRA 125

Query:   163 YFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSLIKSSQLMLDSTTSDQCPMI 222
             Y+RCTH+F Q C A KQVQ+   +P L    Y G HTC ++         S +     + 
Sbjct:   126 YYRCTHRFTQDCLAVKQVQKSDTDPSLFEVKYLGNHTCNNITSPKTTTNFSVSLTNTNIF 185

Query:   223 SFGSAHITEK--DFNPFLSSFPSIKQESNKDDQGPLSDMTHNQSSSSDEYLVSHDFPAFE 280
                  H+TE+  D  P  S    I  E  ++ +      + +     +    S+    F 
Sbjct:   186 EGNRVHVTEQSEDMKPTKSEEVMISLEDLENKKNIFRTFSFSNHEIENGVWKSN---LFL 242

Query:   281 SNEHMKVLSSDHGDVISGVNSSCTASAHSLDLAVDMSVNFDDVLEF 326
              N    +  +  G  I+    S  A+  + + A     + D++++F
Sbjct:   243 GNFVEDLSPATSGSAITSEVLSAPAAVENSETADSYFSSLDNIIDF 288

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2064816 WRKY55 "WRKY DNA-binding protein 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 54/128 (42%), Positives = 68/128 (53%)

Query:   105 EDSGESSKSSTVKDRR----GCYKRRKCAESWTEHSSTLTDDGHAWRKYGQKVILNARFP 160
             E SG S  SST + RR    G  +    A   T ++    DD H WRKYGQK IL +RFP
Sbjct:   134 ERSGASG-SSTPRQRRRKDEGEEQTVLVAALRTGNTDLPPDDNHTWRKYGQKEILGSRFP 192

Query:   161 RNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSLIKSSQLMLDSTTSDQCP 220
             R Y+RCTH+    C A KQVQR+ ++P   R TY G HTC +   S+     S T    P
Sbjct:   193 RAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSHTCYN---STAPTASSATPSTIP 249

Query:   221 MISFGSAH 228
             + S  + H
Sbjct:   250 ISSVTTGH 257

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2195165 ABO3 "ABA overly sensitive mutant 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 51/149 (34%), Positives = 81/149 (54%)

Query:   141 DDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTC 200
             DDG  WRKYGQK I  + + R Y+RC +  DQ C A+K+VQ IQ+ PP++RTTY G+HTC
Sbjct:   103 DDGFTWRKYGQKTIKTSLYQRCYYRCAYAKDQNCYATKRVQMIQDSPPVYRTTYLGQHTC 162

Query:   201 KSLIKSSQLMLDSTTSDQCPMISFGSAHITEKDFNPFLSSFPSIKQES--NKDDQGPLSD 258
             K+       + D+T   +  MI+F    ++E      +    +I +++   +D+   + +
Sbjct:   163 KAFG-----VHDNTYGSE--MINFDQV-VSES----VMRQLATIGEQAVLMEDEANHIMN 210

Query:   259 MTH--NQSSSSDEYLVSHDFPAFESNEHM 285
               +  N     DE    ++FP F S + M
Sbjct:   211 QEYDINDYLVDDEVFWGNEFPLFSSEDLM 239

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0023037401 hypothetical protein (333 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
smart00774	59	smart00774, WRKY, DNA binding domain	5e-32
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-21

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  113 bits (285), Expect = 5e-32
 Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 2/60 (3%)

Query: 141 DDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTC 200
           DDG+ WRKYGQKVI  + +PR+Y+RCT+   QGC A KQVQR  ++P +   TY G HT 
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTY--TQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 141 DDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTC 200
           DDG+ WRKYGQK +  + FPR+Y+RCT     GC   KQV+R  ++P +   TY G H  
Sbjct: 2   DDGYNWRKYGQKPVKGSPFPRSYYRCTS---PGCPVKKQVERSSDDPQIVEITYEGEHNH 58

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	90.49

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=9.4e-31  Score=196.96  Aligned_cols=59  Identities=58%  Similarity=1.044  Sum_probs=57.2

Q ss_pred             CCCChhhhhhccccccCCCCCcccccccCCCCcCChhhhhhhhhcCCCCeEEEEEeccCCC
Q 020291          140 TDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTC  200 (328)
Q Consensus       140 ~~Dg~~WRKYGQK~I~~s~~pRsYyrCt~~~~~gC~A~KqVqr~~~dp~~~~vtY~G~Htc  200 (328)
                      ++|||.|||||||.|+|+++||+|||||+  ++||+|+|+|||+.+||.++.|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~--~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTY--SQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccc--cCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999  689999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=1e-30  Score=197.28  Aligned_cols=59  Identities=53%  Similarity=0.988  Sum_probs=52.1

Q ss_pred             CCCChhhhhhccccccCCCCCcccccccCCCCcCChhhhhhhhhcCCCCeEEEEEeccCCCC
Q 020291          140 TDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCK  201 (328)
Q Consensus       140 ~~Dg~~WRKYGQK~I~~s~~pRsYyrCt~~~~~gC~A~KqVqr~~~dp~~~~vtY~G~Htc~  201 (328)
                      ++|||+|||||||.|+|++|||+||||++   .+|+|+|+|||+.+||.++.|||+|+|||.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~---~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTH---PGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEEC---TTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccc---cChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            48999999999999999999999999999   599999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.49  E-value=0.068  Score=38.46  Aligned_cols=52  Identities=21%  Similarity=0.402  Sum_probs=27.3

Q ss_pred             cCCCChhhhhhccccccCCCCCcccccccCCCCcCChhhhhhhhhcCCCCeEEEEEeccCCC
Q 020291          139 LTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTC  200 (328)
Q Consensus       139 ~~~Dg~~WRKYGQK~I~~s~~pRsYyrCt~~~~~gC~A~KqVqr~~~dp~~~~vtY~G~Htc  200 (328)
                      +.-|||.-+++...      ..+.|+||+.+...+|+|+-.+.  .++.  ..+...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~--~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG--RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT--EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC--EEEECCCccCC
Confidence            45688877665544      34689999998878999987776  3333  33444488987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		9e-10
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		6e-09

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 139 LTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRH 198
           L DDG+ WRKYGQKV+    +PR+Y++CT     GC   K V+R   +P    TTY G+H
Sbjct: 16  LLDDGYRWRKYGQKVVKGNPYPRSYYKCT---TPGCGVRKHVERAATDPKAVVTTYEGKH 72

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 135 HSSTLTD---DGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHR 191
           H+ TL D   DG+ WRKYGQK +  + +PR+Y+RC+     GC   K V+R   +  L  
Sbjct: 6   HTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS---SPGCPVKKHVERSSHDTKLLI 62
Query: 192 TTYYGRH 198
           TTY G+H
Sbjct: 63  TTYEGKH 69
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	3e-22
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	8e-22

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score = 87.9 bits (218), Expect = 3e-22
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 133 TEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRT 192
           T+    + +DG+ WRKYGQK +  + +PR+Y+RC+     GC   K V+R   +  L  T
Sbjct: 7   TQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLIT 63

Query: 193 TYYGRHTC 200
           TY G+H  
Sbjct: 64  TYEGKHDH 71

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 86.7 bits (215), Expect = 8e-22
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 133 TEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRT 192
           T     L DDG+ WRKYGQKV+    +PR+Y++CT     GC   K V+R   +P    T
Sbjct: 10  TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVT 66

Query: 193 TYYGRHTC 200
           TY G+H  
Sbjct: 67  TYEGKHNH 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.96
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.96

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.96  E-value=3.1e-31  Score=207.51  Aligned_cols=65  Identities=38%  Similarity=0.790  Sum_probs=61.3

Q ss_pred             ccccCCCChhhhhhccccccCCCCCcccccccCCCCcCChhhhhhhhhcCCCCeEEEEEeccCCCCCc
Q 020291          136 SSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSL  203 (328)
Q Consensus       136 t~~~~~Dg~~WRKYGQK~I~~s~~pRsYyrCt~~~~~gC~A~KqVqr~~~dp~~~~vtY~G~Htc~~~  203 (328)
                      ...+++|||.|||||||.|+|++|||+|||||+   +||+|+|+|||+.+||.++.|||+|+|||..+
T Consensus        10 ~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           10 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             SSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS---TTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             CCCcCCCCchhhhCcccccCCCCCceeEeEcCC---CCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            345789999999999999999999999999998   79999999999999999999999999999865

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.96  E-value=4e-31  Score=207.69  Aligned_cols=64  Identities=44%  Similarity=0.852  Sum_probs=60.8

Q ss_pred             cccCCCChhhhhhccccccCCCCCcccccccCCCCcCChhhhhhhhhcCCCCeEEEEEeccCCCCCc
Q 020291          137 STLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSL  203 (328)
Q Consensus       137 ~~~~~Dg~~WRKYGQK~I~~s~~pRsYyrCt~~~~~gC~A~KqVqr~~~dp~~~~vtY~G~Htc~~~  203 (328)
                      ..+++|||.|||||||.|+|++|||+|||||+   +||+|+|+|||+.+||.++.|||+|+|||..+
T Consensus        14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CCcCCCCchhhhCcccccCCCcCeeEEeecCc---CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            35689999999999999999999999999999   89999999999999999999999999999864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	1e-22

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.6 bits (217), Expect = 1e-22
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 133 TEHSSTLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRT 192
           T     L DDG+ WRKYGQKV+    +PR+Y++CT     GC   K V+R   +P    T
Sbjct: 3   TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVT 59

Query: 193 TYYGRHTC 200
           TY G+H  
Sbjct: 60  TYEGKHNH 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.97

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=2.8e-32  Score=208.76  Aligned_cols=64  Identities=44%  Similarity=0.852  Sum_probs=60.5

Q ss_pred             cccCCCChhhhhhccccccCCCCCcccccccCCCCcCChhhhhhhhhcCCCCeEEEEEeccCCCCCc
Q 020291          137 STLTDDGHAWRKYGQKVILNARFPRNYFRCTHKFDQGCQASKQVQRIQEEPPLHRTTYYGRHTCKSL  203 (328)
Q Consensus       137 ~~~~~Dg~~WRKYGQK~I~~s~~pRsYyrCt~~~~~gC~A~KqVqr~~~dp~~~~vtY~G~Htc~~~  203 (328)
                      ..+++|||.|||||||.|+|++|||+||||++   +||+|+|+|||+.+||.+|.|||+|+|||..|
T Consensus         7 ~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~---~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           7 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             cccCCCCcEecccCceeccCCCCceEEEEccc---cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            35689999999999999999999999999998   79999999999999999999999999999764