Citrus Sinensis ID: 020376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGRPRKYGPDGTMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTASSPFRRDNWPTIQEPINSTTDINISLPAS
Secondary Structure (PSIPRED)
cccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHcccEEEEEEEccEEEEEEEcccccccccEEEEEEEEEEEEEEEEEccccccccccccccEEEEccccccEEEcccccEEEEcccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEccHHHHEEccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meagegmstgvtvigaeapsayhvaprtenptqvsgslavttspvsvgltgtqekkkrgrprkygpdgtmalspmpisssvppsgdfpsgkrgrgrvsgheskhYKKMGMdnlgelhacsvgtnftphvitinAGEDVMMKVISFSQQGPRAICILSangvisnvtlrqpdssggtltyegRFEILSLsgsfmltesqgtrsrsggmsvslaspdgrvvGGAVAGLLVAAGPVQVVVGsflpgnqqeqkpkkqkaesipaivtpapsivgvipvnnaekegtdghrqqnssplkpntasspfrrdnwptiqepinsttdinislpas
Flexible Loop (DISEMBL)
MEAGEGMSTGVTVIGAEAPSAYHVAPRTenptqvsgslavttspvsvgltgtqekkkrgrprkygpdgtMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISnvtlrqpdssggtLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLpgnqqeqkpkkqkaesipaivtpapsivgvIPVNNAEKEGtdghrqqnssplkpntasspfrrdnwptiqepinsttdinislpas
Low Complexity Region (SEG)
MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEkkkrgrprkygpDGTMALspmpisssvppsGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDgrvvggavagllvaagpvqvvvgSFLPGNqqeqkpkkqkAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTASSPFRRDNWPTIQEPINSTTDINISLPAS
Disordered region (IsUnstruct)
***************************************************************************************************************NLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQ****GGTLTYEGRFEILSLSGSF************************RVVGGAVAGLLVAAGPVQVVVGSFL********************V***PSIVGVIP******************************************************
Disordered Region (DISOPRED)
*************************************************************************************************************************GTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTE*******SGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF********************************************************************************NISLP**
Disordered Region (DISEMBL)
********TGVTVIGAEAPSAYHVAPR***********AVTTSPVSV*****************GPDGTMALSPMPIS************************KHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFML***************SLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGN*************IPAIVTPAPSIVGVIPVNNAEK********************SPFRRDNWPTIQEPINSTTD********
Disordered Region (DISPRO)
*************I**EAPSAY*V***********************************************L***********************************MGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPG************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGRPRKYGPDGTMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTASSPFRRDNWPTIQEPINSTTDINISLPAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.425	0.446	0.333	7e-08

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 23/162 (14%)

Query: 90  GKRGRGRVSGHESKHYKKMGM--DNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQ 147
           GKR RGR  G ++K    + +  D+   L +         HV+ ++ G D++  V ++++
Sbjct: 85  GKRPRGRPPGSKNKAKPPIIVTRDSPNALRS---------HVLEVSPGADIVESVSTYAR 135

Query: 148 QGPRAICILSANGVISNVTLRQP---------DSSGGTLTYEGRFEILSLSGSFMLTESQ 198
           +  R + +L  NG +SNVTLRQP            GG +T  GRFEILSL+G+ +   + 
Sbjct: 136 RRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAP 195

Query: 199 GTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 240
                   +S+ LA   G+VVGG+V   L+A+ PV ++  SF
Sbjct: 196 PGAGG---LSIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
255541324	324	DNA binding protein, putative [Ricinus c	0.966	0.975	0.737	1e-118
224130006	324	predicted protein [Populus trichocarpa]	0.954	0.962	0.716	1e-118
449522149	369	PREDICTED: uncharacterized LOC101212918	0.993	0.880	0.683	1e-107
359807105	346	uncharacterized protein LOC100796830 [Gl	0.993	0.939	0.681	1e-107
449432243	348	PREDICTED: uncharacterized protein LOC10	0.984	0.925	0.674	1e-105
356532097	337	PREDICTED: uncharacterized protein LOC10	0.984	0.955	0.649	1e-104
356568280	338	PREDICTED: uncharacterized protein LOC10	0.981	0.949	0.663	1e-104
296089154	334	unnamed protein product [Vitis vinifera]	0.990	0.970	0.660	1e-102
359489416	328	PREDICTED: uncharacterized protein LOC10	0.972	0.969	0.660	1e-100
356514170	327	PREDICTED: uncharacterized protein LOC10	0.929	0.929	0.617	8e-92

>gi|255541324|ref|XP_002511726.1| DNA binding protein, putative [Ricinus communis] gi|223548906|gb|EEF50395.1| DNA binding protein, putative [Ricinus communis]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/331 (73%), Positives = 267/331 (80%), Gaps = 15/331 (4%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGR 60
           ME  EG+++GVTVIGAEAPS YHVAPRTEN +Q++GS AV  S  S+GLTGT EKKKRGR
Sbjct: 1   METREGLTSGVTVIGAEAPSTYHVAPRTENSSQIAGSPAVAMSQASLGLTGTTEKKKRGR 60

Query: 61  PRKYGPDGTMA--LSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHA 118
           PRKYGPDGT+A  LSPMPISSS PP GDF SGK G+    G E K YKKMGM+N G+  +
Sbjct: 61  PRKYGPDGTVARALSPMPISSSAPPGGDFSSGKPGKVWSGGFEKKKYKKMGMENSGDWAS 120

Query: 119 CSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT 178
            SVGTNFTPHVIT+NAGEDV MKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT
Sbjct: 121 GSVGTNFTPHVITVNAGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT 180

Query: 179 YEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVG 238
           YEGRFEILSLSGSFM TESQGTRSRSGGMSVSLASPDGRVVGG VAGLLVAA PVQVVVG
Sbjct: 181 YEGRFEILSLSGSFMPTESQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVG 240

Query: 239 SFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGT-DGHRQQNSSPLKPNT 297
           SFLPGN Q+QKPKK K + +PA +TPA +I   IPV NAE++ +  GH  QN        
Sbjct: 241 SFLPGNHQDQKPKKIKIDPVPASITPAQTIAIPIPVTNAERDDSMGGHGLQN-------- 292

Query: 298 ASSPFRRDNWPT---IQEPINSTTDINISLP 325
            SS FRR+NW T   +QE   S TDINISLP
Sbjct: 293 -SSSFRRENWTTMQPVQEMRTSGTDINISLP 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130006|ref|XP_002320727.1| predicted protein [Populus trichocarpa] gi|222861500|gb|EEE99042.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/335 (71%), Positives = 263/335 (78%), Gaps = 23/335 (6%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSL-AVTTSPVSVGLTG-TQEKKKR 58
           ME  EG+S+GVTVIGAEAPS YH+APRTENP Q+  S  AV   PV  GL G T EKKKR
Sbjct: 1   MEGREGLSSGVTVIGAEAPSTYHMAPRTENPGQIVVSPPAVEVPPVGAGLIGGTAEKKKR 60

Query: 59  GRPRKYGPDGTMA--LSPMPISSSVPPSG-DFPSGKRGRGRVSGHESKHYKKMGMDNLGE 115
           GRPRKYGPDG +A  LSPMPIS+S P +G D+ +GK G+     +E K YKKMGM+NLGE
Sbjct: 61  GRPRKYGPDGAVARALSPMPISASAPHTGGDYSAGKPGKVWPGSYEKKKYKKMGMENLGE 120

Query: 116 LHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG 175
             A SVGTNFTPHVIT+NAGEDV MKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG
Sbjct: 121 WAANSVGTNFTPHVITVNAGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG 180

Query: 176 TLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQV 235
           TLTYEGRFEILSLSGSFM TE QGTRSRSGGMSVSLASPDGRVVGG+VAGLLVAA PVQV
Sbjct: 181 TLTYEGRFEILSLSGSFMPTEIQGTRSRSGGMSVSLASPDGRVVGGSVAGLLVAASPVQV 240

Query: 236 VVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGTDG--HRQQNSSPL 293
           VVGSFLPGN QEQKPKK K +SIPA   PAP+    IP + AE+E + G    QQN    
Sbjct: 241 VVGSFLPGNHQEQKPKKPKIDSIPATFAPAPA----IPASIAEREESAGTPQGQQN---- 292

Query: 294 KPNTASSPFRRDNWPT---IQEPINSTTDINISLP 325
                SSPF+R+NW T   +Q+  NS TDINISLP
Sbjct: 293 -----SSPFQRENWATMHSMQDVRNSGTDINISLP 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522149|ref|XP_004168090.1| PREDICTED: uncharacterized LOC101212918 [Cucumis sativus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/344 (68%), Positives = 267/344 (77%), Gaps = 19/344 (5%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENP---TQVSGSLAVTTSPVSVGL--TGTQEK 55
           ME  E ++ GVTVIGAEAPSAYHVAPRT+NP       GS  V  SPVSVGL  +GT  K
Sbjct: 25  MEEREAINAGVTVIGAEAPSAYHVAPRTDNPPPPASGGGSPTVAASPVSVGLPGSGTTGK 84

Query: 56  KKRGRPRKYGPDGT--MALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNL 113
           KKRGRPRKYGPDGT  MALSP+P+SSS P +G F   KRG+GR+ G E KH+KKMGM+ +
Sbjct: 85  KKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYI 144

Query: 114 GELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSS 173
           GE +AC+VGTNF PH+IT+NAGEDV MK+ISFSQQGPRAICILSANGVISNVTLRQPDSS
Sbjct: 145 GEWNACAVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSS 204

Query: 174 GGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPV 233
           GGTLTYEGRFEILSLSGSFM TE+QGTRSR+GGMSVSLASPDGRVVGG VAGLL+AAGPV
Sbjct: 205 GGTLTYEGRFEILSLSGSFMPTENQGTRSRTGGMSVSLASPDGRVVGGGVAGLLIAAGPV 264

Query: 234 QVVVGSFLPGNQQEQKPKKQKA-ESIPAIV---TPAPSIVGVIPVNNAEKEGT-DGHRQQ 288
           QVVVGSFLP +QQEQ+  K++  ESIP       P+ +    +P  NA+ E   +G+  Q
Sbjct: 265 QVVVGSFLPTSQQEQQKVKKQKPESIPTAAPGSVPSMAPPTTMPTTNADTEDNLNGNGVQ 324

Query: 289 NSSPLKP-NTASSPFRRDNWPT------IQEPINSTTDINISLP 325
           N  PLKP   A SPF+RD W T      +QEP NS TDINISLP
Sbjct: 325 NPGPLKPAGFAPSPFQRDTWGTNAAVHSLQEPRNSPTDINISLP 368

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807105|ref|NP_001241091.1| uncharacterized protein LOC100796830 [Glycine max] gi|255644758|gb|ACU22881.1| unknown [Glycine max]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/348 (68%), Positives = 262/348 (75%), Gaps = 23/348 (6%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQV---------SGSLAVTTSPVSVGLTG 51
           MEA EG+S+GVTVIGAEAPSAYHVAPR+E P QV         + +  V  SPVS GL G
Sbjct: 1   MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGAAATAAPVGVSPVSAGLDG 60

Query: 52  TQEKKKRGRPRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMG 109
           T  KKKRGRPRKYGPDG  TMALSPMPISSS PPS DF SGKRG+ R  G + K  KK+G
Sbjct: 61  TAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKMR--GMDYKPSKKVG 118

Query: 110 MDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQ 169
           +D LG+L+ACS GTNF PH+IT+NAGED+ MKVISFSQQGPRAICILSANGVISNVTLRQ
Sbjct: 119 LDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQ 178

Query: 170 PDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVA 229
           PDSSGGTLTYEGRFEILSLSGSFM T++QGTRSR+GGMSVSLASPDGRVVGG VAGLLVA
Sbjct: 179 PDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVA 238

Query: 230 AGPVQVVVGSFLPGNQQEQKPKKQKAESI-PAIVTPAPSIVGV-IPVNNAEKEGTD---- 283
           A PVQVVVGSFLP +QQEQK KK K+     A VTP  ++     P  NAEKE  +    
Sbjct: 239 ASPVQVVVGSFLPSSQQEQKIKKSKSSDYGVATVTPTIAVSPTPPPPTNAEKEDVNVMGG 298

Query: 284 GHRQQNSSPLKPN-TASSPFRRDNWPTIQ---EPINSTTDINISLPAS 327
            H  QNS  L  N T  + FRRDNW  +    +   S TDINISLP S
Sbjct: 299 AHVLQNSGTLNSNLTPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432243|ref|XP_004133909.1| PREDICTED: uncharacterized protein LOC101212918 [Cucumis sativus]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/350 (67%), Positives = 267/350 (76%), Gaps = 28/350 (8%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLA------VTTSPVSVGL--TGT 52
           ME  E ++ GVTVIGAEAPSAYHVAPRT+NP       +      V  SPVSVGL  +GT
Sbjct: 1   MEEREAINAGVTVIGAEAPSAYHVAPRTDNPPPPPPPASGGGSPTVAASPVSVGLPGSGT 60

Query: 53  QEKKKRGRPRKYGPDGT--MALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGM 110
             KKKRGRPRKYGPDGT  MALSP+P+SSS P +G F   KRG+GR+ G E KH+KKMGM
Sbjct: 61  TGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGM 120

Query: 111 DNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQP 170
           + +GE +AC+VGTNF PH+IT+NAGEDV MK+ISFSQQGPRAICILSANGVISNVTLRQP
Sbjct: 121 EYIGEWNACAVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQP 180

Query: 171 DSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAA 230
           DSSGGTLTYEGRFEILSLSGSFM TE+QGTRSR+GGMSVSLASPDGRVVGG VAGLL+AA
Sbjct: 181 DSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRTGGMSVSLASPDGRVVGGGVAGLLIAA 240

Query: 231 GPVQVVVGSFLPGNQQEQKPKKQKA-ESIPAIVTPAPSIV------GVIPVNNAEKEGT- 282
           GPVQVVVGSFLP +QQEQ+  K++  ESIP   T AP  V        +P  NA+ E   
Sbjct: 241 GPVQVVVGSFLPTSQQEQQKVKKQKPESIP---TAAPGSVPSMAPPTTMPTTNADTEDNL 297

Query: 283 DGHRQQNSSPLKP-NTASSPFRRDNWPT------IQEPINSTTDINISLP 325
           +G+  QN  PLKP   A SPF+RD W T      +QEP NS TDINISLP
Sbjct: 298 NGNGVQNPGPLKPAGFAPSPFQRDTWGTNAAVHSLQEPRNSPTDINISLP 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532097|ref|XP_003534610.1| PREDICTED: uncharacterized protein LOC100791563 [Glycine max]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/342 (64%), Positives = 259/342 (75%), Gaps = 20/342 (5%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQV------SGSLAVTTSPVSVGLTGTQE 54
           ME  EG+S+GVTVIGAEAPSAYH+APR+E P+QV      + + A+  SP SVGL GT  
Sbjct: 1   MEGREGISSGVTVIGAEAPSAYHMAPRSEAPSQVPPPVPEATAGAIGVSPASVGLDGTAA 60

Query: 55  KKKRGRPRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDN 112
           KKKRGRPRKYGPDG  +MALSP+PISSS P + +F SGK+ RG+    E K  KK+G+D 
Sbjct: 61  KKKRGRPRKYGPDGLNSMALSPIPISSSAPFANEFSSGKQ-RGKPRAMEYKLPKKVGVDL 119

Query: 113 LGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS 172
            G+    SVGTNF PH+IT+N GED+ MKVISFSQQGPRAICILSA+GVISNVTLRQPDS
Sbjct: 120 FGD----SVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDS 175

Query: 173 SGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGP 232
           SGGTLTYEGRFEILSLSGSFM T++QGTRSRSGGMSVSL+SPDGR+VGG VAGLLVAAGP
Sbjct: 176 SGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRIVGGGVAGLLVAAGP 235

Query: 233 VQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGT-DGHRQQNSS 291
           VQVVVGSFLP N Q++KPKK K++  PA VTP+ ++    P  N EKE    GH   N+S
Sbjct: 236 VQVVVGSFLPNNPQDKKPKKPKSDYAPANVTPSIAVSSAPPPTNGEKEDVMGGHLLHNNS 295

Query: 292 PLKPNTASSP---FRRDNWPTIQEPINS---TTDINISLPAS 327
               N+  SP   FRR+NW  +    +S    TDINISLP S
Sbjct: 296 GTTLNSNFSPPSAFRRENWVNMHSMADSMKLVTDINISLPDS 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568280|ref|XP_003552341.1| PREDICTED: uncharacterized protein LOC100777213 [Glycine max]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/342 (66%), Positives = 263/342 (76%), Gaps = 21/342 (6%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQV------SGSLAVTTSPVSVGLTGTQE 54
           ME  EG S+GVTVIGAEAPSAYH+APR+E P+QV      + + A+  SPVSVGL GT  
Sbjct: 3   MEGREGFSSGVTVIGAEAPSAYHMAPRSEAPSQVPPPVPEATAGAIGVSPVSVGLDGTAA 62

Query: 55  KKKRGRPRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDN 112
           KKKRGRPRKYGPDG  +MALSPMPISSS P + +F SGKRG+ R  G E K  KK+G+D 
Sbjct: 63  KKKRGRPRKYGPDGLNSMALSPMPISSSAPFANNFSSGKRGKSR--GMEYKLLKKVGVDL 120

Query: 113 LGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS 172
            G+    SVGTNF PH+IT+N GED+ MKVISFSQQGPRAICILSA+GVISNVTLRQPDS
Sbjct: 121 FGD----SVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDS 176

Query: 173 SGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGP 232
           SGGTLTYEGRFEILSLSGSFM T++QG+RSRSGGMSVSL+SPDGRVVGG VAGLLVAAGP
Sbjct: 177 SGGTLTYEGRFEILSLSGSFMPTDNQGSRSRSGGMSVSLSSPDGRVVGGGVAGLLVAAGP 236

Query: 233 VQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGT-DGHRQQNSS 291
           VQVVVGSFLP NQQ+QKPKK K++  PA VTP+ ++    P  N EKE    GH   N+S
Sbjct: 237 VQVVVGSFLPNNQQDQKPKKPKSDYAPANVTPSITVSSAPPPTNGEKEDVIGGHLLHNNS 296

Query: 292 PLKPNTASSP---FRRDNW---PTIQEPINSTTDINISLPAS 327
               N+  +P   FRR+NW    ++ + + S TDINISLP S
Sbjct: 297 GTTLNSNLTPPSAFRRENWVNMHSLTDSMKSATDINISLPDS 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089154|emb|CBI38857.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/333 (66%), Positives = 253/333 (75%), Gaps = 9/333 (2%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGR 60
           ME  EGM++GVTVIGAEAPS Y +  RTENP+Q++GS AV  SPVSVG TGT  KKKRGR
Sbjct: 1   MEGREGMTSGVTVIGAEAPSDYEMVARTENPSQIAGSPAVDASPVSVGFTGTVGKKKRGR 60

Query: 61  PRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHA 118
           PRKY PDG  +M LSPMPISSS P SG+F SGKRGRGR  G ESK  +K+G +N G   A
Sbjct: 61  PRKYQPDGMASMTLSPMPISSSAPLSGNFSSGKRGRGRPVGSESKQKQKVGSENSGNWSA 120

Query: 119 CSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT 178
            S G NFTPH+IT+NAGEDV MK+ISFSQQGPRA+CILSANGVISNVTLRQ DSSGGTLT
Sbjct: 121 ISDGVNFTPHIITVNAGEDVTMKLISFSQQGPRAVCILSANGVISNVTLRQQDSSGGTLT 180

Query: 179 YEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVG 238
           YEGRFEILSL+GSF+ TES GTR+R+GGMSVSLASPDGRVVGG VAGLL+AA PV VVVG
Sbjct: 181 YEGRFEILSLTGSFVPTESGGTRNRAGGMSVSLASPDGRVVGGGVAGLLIAASPVLVVVG 240

Query: 239 SFLPGNQQEQKPKKQKAESIPAIVTPAP--SIVGVIPVNNAEKEGTDGHRQQNSSPLKPN 296
           SFLP N   QKPKK K+ S     TP    +    +  +  ++EG  G  Q +SS LKP+
Sbjct: 241 SFLPDNAPVQKPKKMKSVSA-QTATPVSVQTTTPPVVTSTPKEEGVGGQGQPSSSALKPD 299

Query: 297 TAS-SPFRRDNWP---TIQEPINSTTDINISLP 325
            AS S  +R+NW    ++Q+   S TDINISLP
Sbjct: 300 IASPSSIQRENWASMQSMQDSRKSGTDINISLP 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489416|ref|XP_002273440.2| PREDICTED: uncharacterized protein LOC100262627 [Vitis vinifera]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/327 (66%), Positives = 249/327 (76%), Gaps = 9/327 (2%)

Query: 7   MSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGRPRKYGP 66
           M++GVTVIGAEAPS Y +  RTENP+Q++GS AV  SPVSVG TGT  KKKRGRPRKY P
Sbjct: 1   MTSGVTVIGAEAPSDYEMVARTENPSQIAGSPAVDASPVSVGFTGTVGKKKRGRPRKYQP 60

Query: 67  DG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTN 124
           DG  +M LSPMPISSS P SG+F SGKRGRGR  G ESK  +K+G +N G   A S G N
Sbjct: 61  DGMASMTLSPMPISSSAPLSGNFSSGKRGRGRPVGSESKQKQKVGSENSGNWSAISDGVN 120

Query: 125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFE 184
           FTPH+IT+NAGEDV MK+ISFSQQGPRA+CILSANGVISNVTLRQ DSSGGTLTYEGRFE
Sbjct: 121 FTPHIITVNAGEDVTMKLISFSQQGPRAVCILSANGVISNVTLRQQDSSGGTLTYEGRFE 180

Query: 185 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGN 244
           ILSL+GSF+ TES GTR+R+GGMSVSLASPDGRVVGG VAGLL+AA PV VVVGSFLP N
Sbjct: 181 ILSLTGSFVPTESGGTRNRAGGMSVSLASPDGRVVGGGVAGLLIAASPVLVVVGSFLPDN 240

Query: 245 QQEQKPKKQKAESIPAIVTPAP--SIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTAS-SP 301
              QKPKK K+ S     TP    +    +  +  ++EG  G  Q +SS LKP+ AS S 
Sbjct: 241 APVQKPKKMKSVSA-QTATPVSVQTTTPPVVTSTPKEEGVGGQGQPSSSALKPDIASPSS 299

Query: 302 FRRDNWP---TIQEPINSTTDINISLP 325
            +R+NW    ++Q+   S TDINISLP
Sbjct: 300 IQRENWASMQSMQDSRKSGTDINISLP 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514170|ref|XP_003525779.1| PREDICTED: uncharacterized protein LOC100801730 [Glycine max]

 Score =  343 bits (879), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 215/348 (61%), Positives = 244/348 (70%), Gaps = 44/348 (12%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVG---------LTG 51
           MEA  G+S+GVTV+G++APS YHVAPRT+NP   SGS   T  P + G          T 
Sbjct: 1   MEASGGVSSGVTVVGSDAPSDYHVAPRTDNPAPASGS--TTQIPATAGSALSPSHPPHTA 58

Query: 52  TQE--------KKKRGRPRKYGPDG--TMALSPMPISSS--VPPSGDFPSGKRGRGRVSG 99
             E        KKKRGRPRKY PDG  TMALSP PISSS  +PP  DF S KRG+ + + 
Sbjct: 59  AMEAYPATMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPAS 118

Query: 100 HESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSAN 159
             SK   K  ++NLGE  ACSVG NFTPH+IT+N+GEDV MKVISFSQQGPRAICILSAN
Sbjct: 119 SVSK--AKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSAN 176

Query: 160 GVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVV 219
           GVIS+VTLRQPDSSGGTLTYEGRFEILSLSGSFM  ES GTRSRSGGMSVSLASPDGRVV
Sbjct: 177 GVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNESGGTRSRSGGMSVSLASPDGRVV 236

Query: 220 GGAVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEK 279
           GG VAGLLVAA PVQVVVGSFL GNQ EQKP+KQK E I + VTPA     V+P++  + 
Sbjct: 237 GGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISS-VTPA----AVVPISTLD- 290

Query: 280 EGTDGHRQQNSSPLKPNTASSPFRRDNWPTI-QEPINSTTDINISLPA 326
                       P+   +A+S  R DNW  +  E  +   DIN+SLPA
Sbjct: 291 ------------PVSILSAASSIRNDNWSAMPAEAKDKPADINVSLPA 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.691	0.710	0.487	7.7e-52
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.926	0.851	0.398	1.1e-46
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.388	0.380	0.651	2.6e-45
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.290	0.226	0.757	1.1e-39
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.648	0.603	0.423	4.5e-38
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.449	0.363	0.577	2.4e-37
TAIR|locus:2167988	404	AT5G62260 [Arabidopsis thalian	0.299	0.242	0.714	5.2e-33
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.437	0.410	0.496	9.8e-32
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.370	0.320	0.52	7.9e-30
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.376	0.347	0.527	1e-29

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 119/244 (48%), Positives = 141/244 (57%)

Query:    91 KRGRGRVSGHESKH-YKKMGMDNLGELHACS------VGTNFTPHVITINAGEDVMMKVI 143
             KR RG+++G + K  +K +G  + GE           VG+NFTPHVIT+N GED+ M++I
Sbjct:    82 KRVRGKLNGFDMKKMHKTIGFHSSGERFGVGGGVGGGVGSNFTPHVITVNTGEDITMRII 141

Query:   144 SFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSR 203
             SFSQQGPRAICILSANGVISNVTLRQPDS GGTLTYEGRFEILSLSGSFM TE+QG++ R
Sbjct:   142 SFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYEGRFEILSLSGSFMETENQGSKGR 201

Query:   204 SGGMSVSLASPDXXXXXXXXXXXXXXXXXXXXXXXSFLPGNXXXXXX-XXXXAESIPAIV 262
             SGGMSVSLA PD                       SF+  +            E  PA V
Sbjct:   202 SGGMSVSLAGPDGRVVGGGVAGLLIAATPIQVVVGSFITSDQQDHQKPRKQRVEHAPAAV 261

Query:   263 TPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTASSPFRRDNWPTIQE-PINSTTDIN 321
                P      P   +    T+  R+Q   P  P    S F   +W   Q+ P NS TDIN
Sbjct:   262 MSVPPPPSPPPPAASVFSPTNPDREQ---P--P----SSFGISSWTNGQDMPRNSATDIN 312

Query:   322 ISLP 325
             ISLP
Sbjct:   313 ISLP 316

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 134/336 (39%), Positives = 168/336 (50%)

Query:     2 EAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEXXXXXXX 61
             E+     T VT    + PS++H AP    P Q+S     TT+    G++G          
Sbjct:    40 ESSNQSPTSVTPPPPQ-PSSHHTAPP---PLQISTVTTTTTTAAMEGISGGLMKKKRGRP 95

Query:    62 XXXXXDGTMALXXXXXXXXXXXXGDFP---------SGKRGRGRVSGHESKHYKKMG--M 110
                  DGT+                 P         S    R +V    S +  K    +
Sbjct:    96 RKYGPDGTVVALSPKPISSAPAPSHLPPPSSHVIDFSASEKRSKVKPTNSFNRTKYHHQV 155

Query:   111 DNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQP 170
             +NLGE   CSVG NFTPH+IT+N GEDV MK+ISFSQQGPR+IC+LSANGVIS+VTLRQP
Sbjct:   156 ENLGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQP 215

Query:   171 DSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDXXXXXXXXXXXXXXX 230
             DSSGGTLTYEGRFEILSLSGSFM  +S GTRSR+GGMSVSLASPD               
Sbjct:   216 DSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGGLAGLLVAA 275

Query:   231 XXXXXXXXSFLPGNXXXXXXXXXXAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNS 290
                     SFL G                  +  +P+    IP+++A     D HR  +S
Sbjct:   276 SPVQVVVGSFLAGTDHQDQKPKKNKHDF---MLSSPT--AAIPISSA----AD-HRTIHS 325

Query:   291 SPLKPNTASSPFRRDNWPT--IQEPINSTTDINISL 324
                    +S P   + W T    +P N  TDIN+++
Sbjct:   326 ------VSSLPVNNNTWQTSLASDPRNKHTDINVNV 355

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 84/129 (65%), Positives = 101/129 (78%)

Query:    89 SGKRGRGRVSGHESKHY--KKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFS 146
             S KRG+ + +      +   K  ++NLGE    S   NFTPH+IT+NAGEDV  ++ISFS
Sbjct:   112 SEKRGKMKPATPTPSSFIRPKYQVENLGEWSPSSAAANFTPHIITVNAGEDVTKRIISFS 171

Query:   147 QQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGG 206
             QQG  AIC+L ANGV+S+VTLRQPDSSGGTLTYEGRFEILSLSG+FM ++S GTRSR+GG
Sbjct:   172 QQGSLAICVLCANGVVSSVTLRQPDSSGGTLTYEGRFEILSLSGTFMPSDSDGTRSRTGG 231

Query:   207 MSVSLASPD 215
             MSVSLASPD
Sbjct:   232 MSVSLASPD 240

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.1e-39, Sum P(3) = 1.1e-39
 Identities = 72/95 (75%), Positives = 83/95 (87%)

Query:   121 VGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYE 180
             V  +FTPHV+T+NAGEDV MK+++FSQQG RAICILSANG ISNVTLRQ  +SGGTLTYE
Sbjct:   174 VSPSFTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 233

Query:   181 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 215
             G FEILSL+GSF+ +ES GTRSR+GGMSVSLA  D
Sbjct:   234 GHFEILSLTGSFIPSESGGTRSRAGGMSVSLAGQD 268

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 97/229 (42%), Positives = 124/229 (54%)

Query:    85 GDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVIS 144
             GD   G++ RGR  G  SK  K   +  LG     S G  FTPHV+T+ AGEDV  K+++
Sbjct:   133 GD--GGEKKRGRPPGSSSKRLK---LQALG-----STGIGFTPHVLTVLAGEDVSSKIMA 182

Query:   145 FSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRS 204
              +  GPRA+C+LSANG ISNVTLRQ  +SGGT+TYEGRFEILSLSGSF L E+ G RSR+
Sbjct:   183 LTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRSRT 242

Query:   205 GGMSVSLASPDXXXXXXXXXXXXXXXXXXXXXXXSFLP-GNXXXXXXXXXXAESIPAIVT 263
             GG+SVSL+SPD                       SFLP G             S P +  
Sbjct:   243 GGLSVSLSSPDGNVLGGSVAGLLIAASPVQIVVGSFLPDGEKEPKQHVGQMGLSSPVLPR 302

Query:   264 PAPSIVGVIPVNNAEKEGTDGHRQ---QNSSPLKPNTASSPFRRD-NWP 308
              AP+ V + P ++ +  GT         + SP+  +T   P+    N P
Sbjct:   303 VAPTQVLMTP-SSPQSRGTMSESSCGGGHGSPIHQSTGG-PYNNTINMP 349

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 93/161 (57%), Positives = 107/161 (66%)

Query:    67 DGTMA--LXXXXXXXXXXXXGDFPSGKRGRGRVSGHESKHYKKMGM---D------NLGE 115
             DGT+   L             +FP  KRGRGR  G  ++  KK  M   D      NL  
Sbjct:    98 DGTLVVTLSPMPISSSVPLTSEFPPRKRGRGR--GKSNRWLKKSQMFQFDRSPVDTNLAG 155

Query:   116 LHACS-VGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG 174
             +     VG NFTPHV+ +NAGEDV MK+++FSQQG RAICILSANG ISNVTLRQ  +SG
Sbjct:   156 VGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSG 215

Query:   175 GTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 215
             GTLTYEGRFEILSL+GSFM  +S GTRSR+GGMSV LA PD
Sbjct:   216 GTLTYEGRFEILSLTGSFMQNDSGGTRSRAGGMSVCLAGPD 256

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2167988 AT5G62260 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 70/98 (71%), Positives = 81/98 (82%)

Query:   118 ACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTL 177
             +C VG NFT H  T+N GEDV MKV+ +SQQG RAICILSA G ISNVTL QP ++GGTL
Sbjct:   153 SCYVGANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGTL 212

Query:   178 TYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 215
             TYEGRFEILSLSGSFM TE+ GT+ R+GGMS+SLA P+
Sbjct:   213 TYEGRFEILSLSGSFMPTENGGTKGRAGGMSISLAGPN 250

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 74/149 (49%), Positives = 97/149 (65%)

Query:    67 DGTMALXXXXXXXXXXXXGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFT 126
             DG+++L             +  S KRGRGR  G      KK  M ++GEL   S G +FT
Sbjct:   110 DGSVSLALSSSSVSTITPNN--SNKRGRGRPPGSG----KKQRMASVGELMPSSSGMSFT 163

Query:   127 PHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEIL 186
             PHVI ++ GED+  KVI+FSQQGPRAIC+LSA+G +S  TL QP +S G + YEGRFEIL
Sbjct:   164 PHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSASPGAIKYEGRFEIL 223

Query:   187 SLSGSFMLTESQGTRSRSGGMSVSLASPD 215
             +LS S+++      R+R+G +SVSLASPD
Sbjct:   224 ALSTSYIVATDGSFRNRTGNLSVSLASPD 252

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 65/125 (52%), Positives = 91/125 (72%)

Query:    91 KRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGP 150
             KR RGR  G      +K  + NLGE    S G  F PHVI++ +GED++ KV+SFSQ+ P
Sbjct:   147 KRARGRPPGTG----RKQRLANLGEWMNTSAGLAFAPHVISVGSGEDIVSKVLSFSQKRP 202

Query:   151 RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVS 210
             RA+CI+S  G +S+VTLR+P S+  +LT+EGRFEILSL GS+++ E  G++SR+GG+SVS
Sbjct:   203 RALCIMSGTGTVSSVTLREPASTTPSLTFEGRFEILSLGGSYLVNEEGGSKSRTGGLSVS 262

Query:   211 LASPD 215
             L+ P+
Sbjct:   263 LSGPE 267

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 67/127 (52%), Positives = 87/127 (68%)

Query:    89 SGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQ 148
             S KRGRGR  G      KK  + ++GE+   S G +FTPHVI ++ GED+  KVISFS Q
Sbjct:   132 SNKRGRGRPPGSG----KKQRLSSIGEMMPSSTGMSFTPHVIVVSIGEDIASKVISFSHQ 187

Query:   149 GPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMS 208
             GPRAIC+LSA+G +S  TL QP  S GT+ YEG FE++SLS S++ T      +R+G ++
Sbjct:   188 GPRAICVLSASGAVSTATLLQPAPSHGTIIYEGLFELISLSTSYLNTTDNDYPNRTGSLA 247

Query:   209 VSLASPD 215
             VSLASPD
Sbjct:   248 VSLASPD 254

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	2e-38
cd11378	113	cd11378, DUF296, Domain of unknown function found	2e-34
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	2e-05

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  132 bits (334), Expect = 2e-38
 Identities = 55/123 (44%), Positives = 71/123 (57%), Gaps = 9/123 (7%)

Query: 125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPD---SSGGTLTYEG 181
             PHV+ +  GED++  + +F++Q      +LS  G +SNVTLRQPD    S G +T EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 182 RFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVA-GLLVAAGPVQVVVGSF 240
           RFEILSLSG+            SG + VSLA PDG+VVGG +A G + A G V V   SF
Sbjct: 61  RFEILSLSGTISP-----GGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

Query: 241 LPG 243
              
Sbjct: 116 ENA 118

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  121 bits (306), Expect = 2e-34
 Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 8/118 (6%)

Query: 126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS---SGGTLTYEGR 182
            P V+ +  GED++  + +F+++      +LS  G +SN TLR PD       T+T+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 183 FEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 240
            EILSLSG+    + +     SG + VSLA  DGRV+GG + G LV AG V+VV+G  
Sbjct: 61  LEILSLSGNISPDDGK----PSGHLHVSLADSDGRVIGGHLLGALV-AGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 135 GEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFEILSLSGS 191
           GED+  ++ +F++Q      +++A G + +  LR     +    T+      E+LSL G+
Sbjct: 19  GEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGN 78

Query: 192 FMLTESQGTRSRSGGMSVSLASPDGRVVGGAVA-GLLVAAGPVQVVVGSFLPGNQQEQKP 250
             L +          +  +L   +G  +GG +  G +     V +     LPG    ++ 
Sbjct: 79  IALDDP------FVHLHAALGDENGITLGGHLLEGEVFPTAEVFIRE---LPGELFRREF 129

Query: 251 KKQ 253
              
Sbjct: 130 DPT 132

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.95
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.91
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.06
smart00384	26	AT_hook DNA binding domain with preference for A/T	95.95
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	81.89

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.95  E-value=4.1e-28  Score=202.98  Aligned_cols=111  Identities=32%  Similarity=0.455  Sum_probs=99.3

Q ss_pred             ceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCC--CCCceeeccceeEEEeeeeeeccCCCCCcC
Q 020376          125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS--SGGTLTYEGRFEILSLSGSFMLTESQGTRS  202 (327)
Q Consensus       125 f~phVIrV~~GEDVvekI~~Faqq~~raicILSaiGaVSnVTLrq~~~--~~~t~t~eG~FEILSLsGsis~~e~g~~~~  202 (327)
                      ||+|++||++||||+++|++||+++.+..|+||++|+|++|+|++++.  ....++|+|+|||+||+|||...++    +
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG----K   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT----E
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC----C
Confidence            689999999999999999999999889889999999999999999954  3358899999999999999998555    4


Q ss_pred             CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEe
Q 020376          203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF  240 (327)
Q Consensus       203 ~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF  240 (327)
                      ++.|||++|++.||+++||||..+.+ ..++||+|.++
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~  113 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITEL  113 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEe
Confidence            89999999999999999999996676 67999999988

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.91  E-value=6.4e-24  Score=184.60  Aligned_cols=114  Identities=20%  Similarity=0.311  Sum_probs=104.9

Q ss_pred             CCceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCC
Q 020376          123 TNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQG  199 (327)
Q Consensus       123 ~~f~phVIrV~~GEDVvekI~~Faqq~~raicILSaiGaVSnVTLrq~~~~~---~t~t~eG~FEILSLsGsis~~e~g~  199 (327)
                      ..-+.|++||++|||+++.|.+||+++.+..++++|+|++++++|++++.++   .++++.|+||||||.|||..++   
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence            4567899999999999999999999999999999999999999999999654   5889999999999999999887   


Q ss_pred             CcCCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecCC
Q 020376          200 TRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPG  243 (327)
Q Consensus       200 ~~~~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF~~~  243 (327)
                         |+.|||++|++++|+++||||.++.+.. ++||+|..+...
T Consensus        84 ---p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~  123 (141)
T COG1661          84 ---PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGE  123 (141)
T ss_pred             ---CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEcccc
Confidence               7899999999999999999999988765 999999998433

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.06  E-value=0.002  Score=35.83  Aligned_cols=12  Identities=67%  Similarity=1.085  Sum_probs=4.5

Q ss_pred             hhccCCCCCCCC
Q 020376           55 KKKRGRPRKYGP   66 (327)
Q Consensus        55 kkKRGRPrKY~~   66 (327)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            689999999864

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=95.95  E-value=0.0033  Score=40.98  Aligned_cols=15  Identities=60%  Similarity=0.811  Sum_probs=13.1

Q ss_pred             hhccCCCCCCCCCCC
Q 020376           55 KKKRGRPRKYGPDGT   69 (327)
Q Consensus        55 kkKRGRPrKY~~dg~   69 (327)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999988765

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=81.89  E-value=0.56  Score=43.57  Aligned_cols=20  Identities=50%  Similarity=0.848  Sum_probs=14.5

Q ss_pred             chhhhccCCCCCC-CCCCCCc
Q 020376           52 TQEKKKRGRPRKY-GPDGTMA   71 (327)
Q Consensus        52 ~~~kkKRGRPrKY-~~dg~~~   71 (327)
                      ...|||||||||- |-.|...
T Consensus        65 sdAKRKRGRPRKKsggsgErn   85 (219)
T PF14621_consen   65 SDAKRKRGRPRKKSGGSGERN   85 (219)
T ss_pred             chhhhhcCCCccCCCCCcccc
Confidence            4689999999964 5555533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	4e-27
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	2e-26
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	4e-18
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	2e-08
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	5e-08
3htn_A	149	Putative DNA binding protein; DUF269 family protei	1e-07

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  103 bits (257), Expect = 4e-27
 Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 11/134 (8%)

Query: 118 ACSVGTNFTPHVITINAGEDVMMKVISFSQQ-GPRAICILSANGVISNVTLRQPDSSGGT 176
           +    +    + + +  G++V  ++ +F QQ   RA  I    G +++V LR       T
Sbjct: 11  SHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EAT 69

Query: 177 LTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVV 236
            +  G FE++SL+G+  LT           + ++++ P G ++GG +         +++V
Sbjct: 70  TSLTGTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTVRTTLELV 121

Query: 237 VGSFLPGNQQEQKP 250
           +G   P     ++P
Sbjct: 122 IGEL-PALTFSRQP 134

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score =  100 bits (251), Expect = 2e-26
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 127 PHVITINAGEDVMMKVISF-SQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEI 185
              + +  G D+  +++    Q    A  I S  G +S + +R  D S  TL     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLAD-SVSTLQVSAPFEI 62

Query: 186 LSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 240
           LSLSG+               + +++A   GRV GG +    +     ++++  +
Sbjct: 63  LSLSGTLTYQHC--------HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY 109

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 78.9 bits (194), Expect = 4e-18
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 120 SVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG---T 176
            + +    ++  +  GE+++  + +F ++      I++  G + N  +            
Sbjct: 4   GMFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKV 63

Query: 177 LTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVV 236
           +  +G +E++SL G+  L + +          VSL + +G V GG +    V    + + 
Sbjct: 64  IPLKGSYELISLIGNVSLKDGE----PFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ 119

Query: 237 VGSFLPGNQQEQKP 250
               L G + E+KP
Sbjct: 120 E---LKGEKIERKP 130

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 128 HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG---TLTYEGRFE 184
            ++ ++ G+D++ ++  F ++       +SA G + +  +   D               E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 185 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVV 237
           ILSLSG+  + +S         + V L   DG V GG +    V A  V V+ 
Sbjct: 72  ILSLSGNVSMKDS----KPFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 50.7 bits (121), Expect = 5e-08
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGT--LTYEGRF 183
           T +++ +  G++V+  +   ++            G +S  T    D              
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 184 EILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 240
           E+ +++GS    E +     S     ++     +  GG + GL V  G  ++ V  +
Sbjct: 73  EMANMTGSIAWKEGK----PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY 125

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 128 HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFE 184
           ++++IN   +++  + +F ++       ++  G I  +TLR       +    T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 185 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAA 230
           I +L+G+      Q        + +++   D   + G +   +   
Sbjct: 78  ISNLTGNISSMNEQ----VYLHLHITVGRSDYSALAGHLLSAIQNG 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.94
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.94
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.94
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.94
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.93
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.91
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	92.93

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.94  E-value=3.3e-27  Score=201.38  Aligned_cols=110  Identities=17%  Similarity=0.288  Sum_probs=99.4

Q ss_pred             eeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 020376          126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  202 (327)
Q Consensus       126 ~phVIrV~~GEDVvekI~~Faqq~~raicILSaiGaVSnVTLrq~~~~~---~t~t~eG~FEILSLsGsis~~e~g~~~~  202 (327)
                      ++|++||++||||+++|.+||+++.+..|+++++|++++|+|+|++.+.   ..++++|+|||+||+|||.+.++    +
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g----~   85 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG----E   85 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC----C
Confidence            7999999999999999999998776666667999999999999998764   36889999999999999999765    4


Q ss_pred             CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEec
Q 020376          203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL  241 (327)
Q Consensus       203 ~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF~  241 (327)
                      ++.|||++|+|.||+++||||..++ +. ++||+|.+|.
T Consensus        86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~  122 (143)
T 2dt4_A           86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELK  122 (143)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEE
T ss_pred             ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcC
Confidence            8999999999999999999999888 55 9999999983

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.94  E-value=4.5e-26  Score=197.33  Aligned_cols=112  Identities=23%  Similarity=0.427  Sum_probs=102.3

Q ss_pred             cCCCCceeEEEEEcCCCcHHHHHHHHHH-hCCccEEEEEeeceeeeEEEeCCCCCCCceeeccceeEEEeeeeeeccCCC
Q 020376          120 SVGTNFTPHVITINAGEDVMMKVISFSQ-QGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQ  198 (327)
Q Consensus       120 s~g~~f~phVIrV~~GEDVvekI~~Faq-q~~raicILSaiGaVSnVTLrq~~~~~~t~t~eG~FEILSLsGsis~~e~g  198 (327)
                      +....+++|++||++||||+++|.+||+ ++.+++||++++|++++++|||++... +++|+|+|||+||+|||++.   
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~---   88 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT---   88 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence            3567899999999999999999999996 566689999999999999999999875 78899999999999999985   


Q ss_pred             CCcCCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEe
Q 020376          199 GTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF  240 (327)
Q Consensus       199 ~~~~~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF  240 (327)
                           ..|||++|+|.||+++||||++++++..++||+|..|
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~  125 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL  125 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEc
Confidence                 2799999999999999999998777778999999988

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.94  E-value=1e-26  Score=200.39  Aligned_cols=110  Identities=16%  Similarity=0.278  Sum_probs=101.0

Q ss_pred             eeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 020376          126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  202 (327)
Q Consensus       126 ~phVIrV~~GEDVvekI~~Faqq~~raicILSaiGaVSnVTLrq~~~~~---~t~t~eG~FEILSLsGsis~~e~g~~~~  202 (327)
                      +.|++||++||||+++|.+||+++.+..|+++++|++++|+|++++.+.   ..++|+|+|||+||+|||++.++    +
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~   91 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q   91 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence            7899999999999999999999888877777999999999999998764   36889999999999999999865    4


Q ss_pred             CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEe
Q 020376          203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF  240 (327)
Q Consensus       203 ~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF  240 (327)
                      ++.|||++|+|.||+|+||||..+ ++..++||+|..+
T Consensus        92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~  128 (149)
T 3htn_A           92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDY  128 (149)
T ss_dssp             EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEEC
T ss_pred             ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEc
Confidence            899999999999999999999987 5678999999988

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.94  E-value=4.8e-26  Score=194.63  Aligned_cols=108  Identities=26%  Similarity=0.390  Sum_probs=97.9

Q ss_pred             CceeEEEEEcCCCcHHHHHHHHHHh-CCccEEEEEeeceeeeEEEeCCCCCCCceeeccceeEEEeeeeeeccCCCCCcC
Q 020376          124 NFTPHVITINAGEDVMMKVISFSQQ-GPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRS  202 (327)
Q Consensus       124 ~f~phVIrV~~GEDVvekI~~Faqq-~~raicILSaiGaVSnVTLrq~~~~~~t~t~eG~FEILSLsGsis~~e~g~~~~  202 (327)
                      +|++|++||++||||+++|.+||++ +.+++||++++|++++++|++++... +++|+|+|||+||+|||.++       
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-------   72 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-------   72 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-------
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-------
Confidence            3789999999999999999999976 55578999999999999999999864 78899999999999999984       


Q ss_pred             CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEe
Q 020376          203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF  240 (327)
Q Consensus       203 ~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF  240 (327)
                       ..|||++|+|.||+++||||++++++..|+||+|.+|
T Consensus        73 -~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~  109 (142)
T 2p6y_A           73 -HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY  109 (142)
T ss_dssp             -CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEEC
T ss_pred             -CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEc
Confidence             2699999999999999999998677788999999988

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.93  E-value=1.8e-26  Score=197.41  Aligned_cols=111  Identities=23%  Similarity=0.254  Sum_probs=98.8

Q ss_pred             ceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCc
Q 020376          125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTR  201 (327)
Q Consensus       125 f~phVIrV~~GEDVvekI~~Faqq~~raicILSaiGaVSnVTLrq~~~~~---~t~t~eG~FEILSLsGsis~~e~g~~~  201 (327)
                      -++|++||++||||+++|.+||++..+..|+++++|+|++++|++++...   ..++++|+|||+||+|||++.++    
T Consensus         9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg----   84 (146)
T 2h6l_A            9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS----   84 (146)
T ss_dssp             CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT----
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC----
Confidence            36999999999999999999998766655556999999999999998775   37889999999999999999765    


Q ss_pred             CCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 020376          202 SRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP  242 (327)
Q Consensus       202 ~~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF~~  242 (327)
                      +++.|||++|+ .||+++||||.+++|  .|+||+|.+|..
T Consensus        85 ~p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~  122 (146)
T 2h6l_A           85 KPFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSG  122 (146)
T ss_dssp             EEEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBS
T ss_pred             CceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCC
Confidence            48999999999 999999999998885  699999999843

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.91  E-value=4.8e-24  Score=183.18  Aligned_cols=110  Identities=19%  Similarity=0.289  Sum_probs=98.8

Q ss_pred             eeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 020376          126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  202 (327)
Q Consensus       126 ~phVIrV~~GEDVvekI~~Faqq~~raicILSaiGaVSnVTLrq~~~~~---~t~t~eG~FEILSLsGsis~~e~g~~~~  202 (327)
                      +.+++||++||||+++|.+||+++.+..++++++|++++++|++++.+.   ...+++ ++||+||+|||++.|+    +
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence            5699999999999999999999988888888999999999999998764   256788 8999999999998775    4


Q ss_pred             CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEe
Q 020376          203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF  240 (327)
Q Consensus       203 ~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF  240 (327)
                      ++.|||++|+|.||+++||||..+.|...|+||+|..+
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~  125 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY  125 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc
Confidence            99999999999999999999998855445999999986

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=92.93  E-value=0.051  Score=34.41  Aligned_cols=16  Identities=44%  Similarity=0.497  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCCCcccc
Q 020376           89 SGKRGRGRVSGHESKHYK  106 (327)
Q Consensus        89 ~~kr~Rgr~~p~gs~~k~  106 (327)
                      ..||+|||  |.|||||.
T Consensus         3 tpKrpRgR--pkGSKNk~   18 (26)
T 2ezd_A            3 TPKRPRGR--PKGSKNKG   18 (26)
T ss_dssp             SCCCCSSC--CTTCCCCS
T ss_pred             CCcCCCCC--cCcccccC
Confidence            35999999  99999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	327
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	6e-25
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	2e-16

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 95.7 bits (238), Expect = 6e-25
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 122 GTNFTPHVITINAGEDVMMKVISFS-QQGPRAICILSANGVISNVTLRQPDSSGGTLTYE 180
            +    + + +  G++V  ++ +F  Q   RA  I    G +++V LR       T +  
Sbjct: 3   ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLT 61

Query: 181 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 240
           G FE++SL+G+  LT           + ++++ P G ++GG +         +++V+G  
Sbjct: 62  GTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL 113

Query: 241 LPGNQQEQKP 250
            P     ++P
Sbjct: 114 -PALTFSRQP 122

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 72.7 bits (178), Expect = 2e-16
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 11/126 (8%)

Query: 128 HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFE 184
            ++ ++ G+D++ ++  F ++       +SA G + +  +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 185 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGN 244
           ILSLSG+  + +S+        + V L   DG V GG +    V A  V V+    L G 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP---LSGE 123

Query: 245 QQEQKP 250
             E+  
Sbjct: 124 APERAF 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.94
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.91

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=7e-27  Score=196.69  Aligned_cols=110  Identities=24%  Similarity=0.439  Sum_probs=102.1

Q ss_pred             CCCceeEEEEEcCCCcHHHHHHHHHH-hCCccEEEEEeeceeeeEEEeCCCCCCCceeeccceeEEEeeeeeeccCCCCC
Q 020376          122 GTNFTPHVITINAGEDVMMKVISFSQ-QGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT  200 (327)
Q Consensus       122 g~~f~phVIrV~~GEDVvekI~~Faq-q~~raicILSaiGaVSnVTLrq~~~~~~t~t~eG~FEILSLsGsis~~e~g~~  200 (327)
                      ++..|.|++||++||||+++|.+||+ ++.+++||++++|++++|+|++|+.. ....++|+|||+||+|||...+    
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~-~~~~~~g~~Ei~sl~G~I~~~~----   77 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTG----   77 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTE----
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCC-CcEEecCcEEEEEEEEEeccCC----
Confidence            56789999999999999999999996 56678999999999999999999876 4788999999999999998765    


Q ss_pred             cCCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEe
Q 020376          201 RSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF  240 (327)
Q Consensus       201 ~~~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF  240 (327)
                          .|||++|+|.||+++||||+++++++.++||+|.+|
T Consensus        78 ----~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l  113 (136)
T d2hx0a1          78 ----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL  113 (136)
T ss_dssp             ----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC
T ss_pred             ----CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEc
Confidence                499999999999999999999888999999999999

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=1.2e-24  Score=182.11  Aligned_cols=109  Identities=23%  Similarity=0.294  Sum_probs=98.7

Q ss_pred             eeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 020376          126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  202 (327)
Q Consensus       126 ~phVIrV~~GEDVvekI~~Faqq~~raicILSaiGaVSnVTLrq~~~~~---~t~t~eG~FEILSLsGsis~~e~g~~~~  202 (327)
                      |.|++||++||||+++|.+||++..+..|+++++|++++++|++++.+.   ..+.++|+|||+||+|||...+++    
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~----   85 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK----   85 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC----
Confidence            7999999999999999999999888888999999999999999988765   367899999999999999988874    


Q ss_pred             CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEec
Q 020376          203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL  241 (327)
Q Consensus       203 ~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF~  241 (327)
                      ++.|+|+++++ ||+++||||..+.+.  ++|++|.++.
T Consensus        86 p~~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~  121 (138)
T d2h6la1          86 PFCHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLS  121 (138)
T ss_dssp             EEEEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECB
T ss_pred             cEEEEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEec
Confidence            89999999997 799999999987654  5788888873