Citrus Sinensis ID: 020384

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
MAGKVASGFTPQAQRVFAVPVQKPAAALAPFPSSSRAHSNSNTQFNGRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLPEGSEA
ccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccEEEEccccEEccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccEEcccccccccccccccEEccccccEEEEEcccEEEEccccccc
cccHHHccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEccccccHHcccccccccccccccccccEccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccEEEEcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccEEEEccEcEccccEEEccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccEHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccEEEEEccEcccccccccccEEEccccEEEEEcccEEEEEccccccc
magkvasgftpqaqrvfavpvqkpaaalapfpsssrahsnsntqfngrqftvrrrsfvlpskattdqqgqvegdevvDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYegkavmsneEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYvagkpimsdeEYDKLKQKLKMEgseivvegprcslrsrkvysDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYllelpepfsfifTWFAAVPLIVYLSQSLTKLIVREslilkgpcpncgtenvsFFGTILSissggttntincsncgttmvydsntrlitlpegsea
magkvasgftpqaqrVFAVPVQKPAAALAPfpsssrahsnsntqfngrqftvRRRSFVLpskattdqqgqvegdevvdSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKmegseivvegprcslrsrkVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTincsncgttmvydsntrlitlpegsea
MAGKVASGFTPQAQRVFAVPVQKpaaalapfpsssraHSNSNTQFNGRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLPEGSEA
********************************************************************************ILQY*****************FLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGK********************EIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLIT*******
*********TPQAQRV**************************************************************SKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILS********TINCSNCGTTMVYDSNT***********
********FTPQAQRVFAVPVQKPAAALAP*************QFNGRQFTVRRRSFVLPS*************EVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLPEGSEA
**********************************************GRQFTVRRRSFVLPSK*********EGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLPE****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAGKVASGFTPQAQRVFAVPVQKPAAALAPFPSSSRAHSNSNTQFNGRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLPEGSEA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query327 2.2.26 [Sep-21-2011]
Q8H112324 PGR5-like protein 1A, chl yes no 0.856 0.864 0.790 1e-134
Q8GYC7313 PGR5-like protein 1B, chl no no 0.859 0.897 0.794 1e-128
>sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1 Back     alignment and function desciption
 Score =  477 bits (1227), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/281 (79%), Positives = 258/281 (91%), Gaps = 1/281 (0%)

Query: 47  GRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQAL 106
           G+  ++RRR F+LP+KATT+Q G V GD V DS +L YCSI+K EKK++GE+EQEFLQAL
Sbjct: 45  GKSISLRRRVFLLPAKATTEQSGPVGGDNV-DSNVLPYCSINKAEKKTIGEMEQEFLQAL 103

Query: 107 QAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYD 166
           Q+FYY+GKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI++DEEYD
Sbjct: 104 QSFYYDGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYD 163

Query: 167 KLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDIT 226
           KLK KLK++GS+IV EGPRCSLRS+KVYSDL+VDY KMLLLNVPATVVALGLFFFLDDIT
Sbjct: 164 KLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDIT 223

Query: 227 GFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFF 286
           GFEITY++ELPEP+SFIFTWFAAVP+IVYL+ S+TKLI+++ LILKGPCPNCGTEN SFF
Sbjct: 224 GFEITYIMELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFF 283

Query: 287 GTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLPEGSEA 327
           GTILSISSGG TNT+ C+NCGT MVYDS +RLITLPEGS+A
Sbjct: 284 GTILSISSGGKTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 324
Involved in cyclic electron flow (CEF) around photosystem I.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
255537217320 conserved hypothetical protein [Ricinus 0.975 0.996 0.759 1e-139
225426724331 PREDICTED: PGR5-like protein 1A, chlorop 0.996 0.984 0.755 1e-138
297742627326 unnamed protein product [Vitis vinifera] 0.996 1.0 0.755 1e-138
224071670327 predicted protein [Populus trichocarpa] 0.993 0.993 0.753 1e-138
118487360323 unknown [Populus trichocarpa] 0.984 0.996 0.759 1e-137
356514103321 PREDICTED: PGR5-like protein 1A, chlorop 0.966 0.984 0.758 1e-137
255645443321 unknown [Glycine max] 0.966 0.984 0.755 1e-136
224058627327 predicted protein [Populus trichocarpa] 0.984 0.984 0.731 1e-135
449460457321 PREDICTED: PGR5-like protein 1A, chlorop 0.917 0.934 0.775 1e-133
18416029324 PGR5-like protein 1A [Arabidopsis thalia 0.856 0.864 0.790 1e-132
>gi|255537217|ref|XP_002509675.1| conserved hypothetical protein [Ricinus communis] gi|223549574|gb|EEF51062.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/328 (75%), Positives = 278/328 (84%), Gaps = 9/328 (2%)

Query: 1   MAGKVASGFTPQAQRVFAVPVQKPAAALAPFPSSSRAHSNSNTQFNGRQFTVRRRSFVLP 60
           MA K+A  F+    RV++ P+ KP  +       S +    ++  +G+  +VRRR  +LP
Sbjct: 1   MASKLA--FSLTFPRVYSAPILKPLIS------LSSSSRIHSSHLHGKHLSVRRRILLLP 52

Query: 61  SKATTDQQ-GQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSN 119
            KAT DQQ G+VEGDEVVD KILQYCSIDKK+KKS+GE+EQEFLQALQAFYYEGKA+MSN
Sbjct: 53  IKATADQQQGKVEGDEVVDGKILQYCSIDKKDKKSIGEMEQEFLQALQAFYYEGKAIMSN 112

Query: 120 EEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEI 179
           EEFDNLKEELMWEGSSVVMLS  EQKFLEASMAYV+G PIMSDEE+D+LK +LK EGSEI
Sbjct: 113 EEFDNLKEELMWEGSSVVMLSCDEQKFLEASMAYVSGNPIMSDEEFDQLKLRLKQEGSEI 172

Query: 180 VVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDITGFEITYLLELPEP 239
           VVEGPRCSLRSRKVYSDLSVDYLKM LLNVPA VVALGLFFFLDD+TGFEITYLLELPEP
Sbjct: 173 VVEGPRCSLRSRKVYSDLSVDYLKMFLLNVPAAVVALGLFFFLDDLTGFEITYLLELPEP 232

Query: 240 FSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTN 299
           FSFIFTWFAAVP+IV+LS S T  IV++ LILKGPCPNCGTEN SFFGTILSISSGGTTN
Sbjct: 233 FSFIFTWFAAVPVIVWLSLSFTNAIVKDFLILKGPCPNCGTENQSFFGTILSISSGGTTN 292

Query: 300 TINCSNCGTTMVYDSNTRLITLPEGSEA 327
           ++ CSNCGT MVYDS TRLITLPEGS A
Sbjct: 293 SVKCSNCGTDMVYDSKTRLITLPEGSNA 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225426724|ref|XP_002282120.1| PREDICTED: PGR5-like protein 1A, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742627|emb|CBI34776.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224071670|ref|XP_002303553.1| predicted protein [Populus trichocarpa] gi|222840985|gb|EEE78532.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118487360|gb|ABK95508.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514103|ref|XP_003525746.1| PREDICTED: PGR5-like protein 1A, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|255645443|gb|ACU23217.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224058627|ref|XP_002299573.1| predicted protein [Populus trichocarpa] gi|222846831|gb|EEE84378.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449460457|ref|XP_004147962.1| PREDICTED: PGR5-like protein 1A, chloroplastic-like [Cucumis sativus] gi|449494267|ref|XP_004159497.1| PREDICTED: PGR5-like protein 1A, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18416029|ref|NP_567672.1| PGR5-like protein 1A [Arabidopsis thaliana] gi|30685973|ref|NP_849422.1| PGR5-like protein 1A [Arabidopsis thaliana] gi|30685977|ref|NP_849423.1| PGR5-like protein 1A [Arabidopsis thaliana] gi|75151862|sp|Q8H112.1|PGL1A_ARATH RecName: Full=PGR5-like protein 1A, chloroplastic; Flags: Precursor gi|24030260|gb|AAN41305.1| unknown protein [Arabidopsis thaliana] gi|332659274|gb|AEE84674.1| PGR5-like protein 1A [Arabidopsis thaliana] gi|332659275|gb|AEE84675.1| PGR5-like protein 1A [Arabidopsis thaliana] gi|332659276|gb|AEE84676.1| PGR5-like protein 1A [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
TAIR|locus:2127233324 PGR5-LIKE A "AT4G22890" [Arabi 0.868 0.876 0.783 5.8e-121
TAIR|locus:2118031313 PGRL1B "AT4G11960" [Arabidopsi 0.880 0.920 0.778 1.4e-119
TAIR|locus:2148338301 AT5G59400 "AT5G59400" [Arabido 0.229 0.249 0.392 3.8e-09
TAIR|locus:2127233 PGR5-LIKE A "AT4G22890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 224/286 (78%), Positives = 261/286 (91%)

Query:    43 TQFN-GRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQE 101
             TQ + G+  ++RRR F+LP+KATT+Q G V GD V DS +L YCSI+K EKK++GE+EQE
Sbjct:    40 TQLSPGKSISLRRRVFLLPAKATTEQSGPVGGDNV-DSNVLPYCSINKAEKKTIGEMEQE 98

Query:   102 FLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMS 161
             FLQALQ+FYY+GKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI++
Sbjct:    99 FLQALQSFYYDGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILN 158

Query:   162 DEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFF 221
             DEEYDKLK KLK++GS+IV EGPRCSLRS+KVYSDL+VDY KMLLLNVPATVVALGLFFF
Sbjct:   159 DEEYDKLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFF 218

Query:   222 LDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILKGPCPNCGTE 281
             LDDITGFEITY++ELPEP+SFIFTWFAAVP+IVYL+ S+TKLI+++ LILKGPCPNCGTE
Sbjct:   219 LDDITGFEITYIMELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTE 278

Query:   282 NVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITLPEGSEA 327
             N SFFGTILSISSGG TNT+ C+NCGT MVYDS +RLITLPEGS+A
Sbjct:   279 NTSFFGTILSISSGGKTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 324
GO:0003674 "molecular_function" evidence=ND
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IGI;RCA
GO:0015979 "photosynthesis" evidence=IGI
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010114 "response to red light" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0010218 "response to far red light" evidence=RCA
GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:2118031 PGRL1B "AT4G11960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148338 AT5G59400 "AT5G59400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H112PGL1A_ARATHNo assigned EC number0.79000.85620.8641yesno
Q8GYC7PGL1B_ARATHNo assigned EC number0.79430.85930.8977nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 327
PRK0039846 rpoP DNA-directed RNA polymerase subunit P; Provis 96.12
COG205167 RPS27A Ribosomal protein S27E [Translation, riboso 95.32
PF11023114 DUF2614: Protein of unknown function (DUF2614); In 95.25
PRK00420112 hypothetical protein; Validated 95.17
PRK08097 562 ligB NAD-dependent DNA ligase LigB; Reviewed 95.12
TIGR0120654 lysW lysine biosynthesis protein LysW. This very s 95.11
PF1324826 zf-ribbon_3: zinc-ribbon domain 95.03
TIGR0209838 MJ0042_CXXC MJ0042 family finger-like domain. This 94.79
PF1324023 zinc_ribbon_2: zinc-ribbon domain 94.66
cd00114 307 LIGANc NAD+ dependent DNA ligase adenylation domai 94.65
PF01653 315 DNA_ligase_aden: NAD-dependent DNA ligase adenylat 93.94
smart00532 441 LIGANc Ligase N family. 93.1
COG288861 Predicted Zn-ribbon RNA-binding protein with a fun 93.04
PRK0971064 lar restriction alleviation and modification prote 93.02
PRK05978148 hypothetical protein; Provisional 92.95
TIGR00575 652 dnlj DNA ligase, NAD-dependent. The member of this 92.92
PRK07956 665 ligA NAD-dependent DNA ligase LigA; Validated 92.89
PRK0041559 rps27e 30S ribosomal protein S27e; Reviewed 92.87
PHA0062659 hypothetical protein 92.35
PF06044 254 DRP: Dam-replacing family; InterPro: IPR010324 Dam 92.35
PRK1489059 putative Zn-ribbon RNA-binding protein; Provisiona 92.1
PF1425552 Cys_rich_CPXG: Cysteine-rich CPXCG 92.08
smart00531147 TFIIE Transcription initiation factor IIE. 92.05
PF0166755 Ribosomal_S27e: Ribosomal protein S27; InterPro: I 91.2
PF1435461 Lar_restr_allev: Restriction alleviation protein L 90.6
PRK14351 689 ligA NAD-dependent DNA ligase LigA; Provisional 90.03
smart0065944 RPOLCX RNA polymerase subunit CX. present in RNA p 89.9
cd00114307 LIGANc NAD+ dependent DNA ligase adenylation domai 89.85
TIGR00373158 conserved hypothetical protein TIGR00373. This fam 89.79
PF14353128 CpXC: CpXC protein 89.24
PF0827143 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 89.19
PRK02935110 hypothetical protein; Provisional 89.05
PF1057126 UPF0547: Uncharacterised protein family UPF0547; I 89.01
PF1480334 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C. 88.59
smart0083441 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C 88.54
PRK14350 669 ligA NAD-dependent DNA ligase LigA; Provisional 87.81
PF01653315 DNA_ligase_aden: NAD-dependent DNA ligase adenylat 87.81
PLN0020986 ribosomal protein S27; Provisional 87.74
smart00532 441 LIGANc Ligase N family. 87.57
PRK06266178 transcription initiation factor E subunit alpha; V 87.15
smart0066152 RPOL9 RNA polymerase subunit 9. 86.94
PF05876 557 Terminase_GpA: Phage terminase large subunit (GpA) 86.76
PTZ0008385 40S ribosomal protein S27; Provisional 86.68
COG1645131 Uncharacterized Zn-finger containing protein [Gene 86.48
PRK08097 562 ligB NAD-dependent DNA ligase LigB; Reviewed 85.8
PF0728269 OrfB_Zn_ribbon: Putative transposase DNA-binding d 85.0
TIGR0365553 anti_R_Lar restriction alleviation protein, Lar fa 84.99
PRK14351 689 ligA NAD-dependent DNA ligase LigA; Provisional 84.68
PF0109639 TFIIS_C: Transcription factor S-II (TFIIS); InterP 84.64
PRK07956 665 ligA NAD-dependent DNA ligase LigA; Validated 84.63
PF10083158 DUF2321: Uncharacterized protein conserved in bact 84.33
PF0972342 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134 84.22
PF0519136 ADK_lid: Adenylate kinase, active site lid; InterP 83.95
COG5349126 Uncharacterized protein conserved in bacteria [Fun 83.83
smart0044040 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo 83.62
PF09862113 DUF2089: Protein of unknown function (DUF2089); In 83.57
PF09538108 FYDLN_acid: Protein of unknown function (FYDLN_aci 83.09
PF03367161 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004 82.15
TIGR00575 652 dnlj DNA ligase, NAD-dependent. The member of this 80.72
TIGR02300129 FYDLN_acid conserved hypothetical protein TIGR0230 80.65
smart0077837 Prim_Zn_Ribbon Zinc-binding domain of primase-heli 80.58
PF0180797 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zin 80.45
TIGR0260552 CxxC_CxxC_SSSS putative regulatory protein, FmdB f 80.15
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional Back     alignment and domain information 
Probab=96.12  E-value=0.0057  Score=43.48  Aligned_cols=37  Identities=19%  Similarity=0.572  Sum_probs=26.5

Q ss_pred             CCCCCccccceeccccccccCCCCccceeCCCCCceeEEeccceeee
Q 020384          274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLIT  320 (327)
Q Consensus       274 pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R~it  320 (327)
                      -|||||.++-.-       +   .....+|+.||..+.|...+++|.
T Consensus         5 ~C~~CG~~~~~~-------~---~~~~~~Cp~CG~~~~~~~~~~~v~   41 (46)
T PRK00398          5 KCARCGREVELD-------E---YGTGVRCPYCGYRILFKERPPVVK   41 (46)
T ss_pred             ECCCCCCEEEEC-------C---CCCceECCCCCCeEEEccCCCcce
Confidence            599999975431       1   112789999999999986665543

>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins Back     alignment and domain information
>PRK00420 hypothetical protein; Validated Back     alignment and domain information
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed Back     alignment and domain information
>TIGR01206 lysW lysine biosynthesis protein LysW Back     alignment and domain information
>PF13248 zf-ribbon_3: zinc-ribbon domain Back     alignment and domain information
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain Back     alignment and domain information
>PF13240 zinc_ribbon_2: zinc-ribbon domain Back     alignment and domain information
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain Back     alignment and domain information
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>smart00532 LIGANc Ligase N family Back     alignment and domain information
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09710 lar restriction alleviation and modification protein; Reviewed Back     alignment and domain information
>PRK05978 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed Back     alignment and domain information
>PHA00626 hypothetical protein Back     alignment and domain information
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements Back     alignment and domain information
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional Back     alignment and domain information
>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG Back     alignment and domain information
>smart00531 TFIIE Transcription initiation factor IIE Back     alignment and domain information
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>smart00659 RPOLCX RNA polymerase subunit CX Back     alignment and domain information
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain Back     alignment and domain information
>TIGR00373 conserved hypothetical protein TIGR00373 Back     alignment and domain information
>PF14353 CpXC: CpXC protein Back     alignment and domain information
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK02935 hypothetical protein; Provisional Back     alignment and domain information
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines Back     alignment and domain information
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C Back     alignment and domain information
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>PLN00209 ribosomal protein S27; Provisional Back     alignment and domain information
>smart00532 LIGANc Ligase N family Back     alignment and domain information
>PRK06266 transcription initiation factor E subunit alpha; Validated Back     alignment and domain information
>smart00661 RPOL9 RNA polymerase subunit 9 Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PTZ00083 40S ribosomal protein S27; Provisional Back     alignment and domain information
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only] Back     alignment and domain information
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed Back     alignment and domain information
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins Back     alignment and domain information
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454 Back     alignment and domain information
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria Back     alignment and domain information
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2 Back     alignment and domain information
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>smart00440 ZnF_C2C2 C2C2 Zinc finger Back     alignment and domain information
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins Back     alignment and domain information
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues Back     alignment and domain information
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300 Back     alignment and domain information
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase Back     alignment and domain information
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
3k1f_M 197 Transcription initiation factor IIB; RNA polymeras 5e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 52/199 (26%)

Query: 78  DSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEG--KAVMSNEEFDNLKEE------- 128
           ++   QY       K  L   E  F+        +   K+++S EE D++          
Sbjct: 10  ETGEHQYQY-----KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 129 --LMW----EGSSVV--MLSSAEQK---FLEASMAYVAGKPIMSDEEYDKLKQKLKMEGS 177
             L W    +   +V   +    +    FL + +     +P M    Y + + +L    +
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDN 123

Query: 178 EIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNV-PATVVAL-GLFFFLDDITGFEITYL-- 233
           ++  +      R +          L+  LL + PA  V + G+        G   T++  
Sbjct: 124 QVFAKYNVS--RLQPYLK------LRQALLELRPAKNVLIDGVL-------GSGKTWVAL 168

Query: 234 -----LELPEPFSF-IFTW 246
                 ++     F IF W
Sbjct: 169 DVCLSYKVQCKMDFKIF-W 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
3uq8_A 322 DNA ligase; adenylated protein, ATP-grAsp, rossman 93.54
3jsl_A 318 DNA ligase; NAD+-dependent, DNA damage, DNA repair 92.72
4glw_A 305 DNA ligase; inhibitor, ligase-ligase inhibitor com 92.53
4esj_A 257 Type-2 restriction enzyme DPNI; restriction endonu 92.36
1zau_A 328 DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacteriu 91.8
1ta8_A 332 DNA ligase, NAD-dependent; nucleotidyl transferase 91.7
1nui_A 255 DNA primase/helicase; zinc-biding domain, toprim f 91.61
1b04_A 318 Protein (DNA ligase); DNA replication; 2.80A {Geob 91.6
3j20_W63 30S ribosomal protein S27E; archaea, archaeal, KIN 90.86
4glx_A 586 DNA ligase; inhibitor, ligase-ligase inhibitor-DNA 90.7
1qxf_A66 GR2, 30S ribosomal protein S27E; structural genomi 90.6
1qyp_A57 RNA polymerase II; transcription, RPB9, Zn ribbon, 88.97
3flo_B 206 DNA polymerase alpha catalytic subunit A; protein- 87.64
4glw_A305 DNA ligase; inhibitor, ligase-ligase inhibitor com 87.24
2xzm_681 RPS27E; ribosome, translation; 3.93A {Tetrahymena 86.86
1pft_A50 TFIIB, PFTFIIBN; N-terminal domain, transcription 86.29
3u5c_b82 RP61, YS20, 40S ribosomal protein S27-A; translati 86.15
3uq8_A322 DNA ligase; adenylated protein, ATP-grAsp, rossman 85.85
2owo_A 671 DNA ligase; protein-DNA complex, ligase-DNA comple 85.76
1zau_A328 DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacteriu 85.4
1b04_A318 Protein (DNA ligase); DNA replication; 2.80A {Geob 85.38
3jsl_A318 DNA ligase; NAD+-dependent, DNA damage, DNA repair 85.27
1ta8_A332 DNA ligase, NAD-dependent; nucleotidyl transferase 84.98
4glx_A 586 DNA ligase; inhibitor, ligase-ligase inhibitor-DNA 84.86
3j20_Y50 30S ribosomal protein S27AE; archaea, archaeal, KI 84.78
1twf_L70 ABC10-alpha, DNA-directed RNA polymerases I, II, a 84.48
1dgs_A 667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 84.41
3iz6_X86 40S ribosomal protein S27 (S27E); eukaryotic ribos 83.22
1dl6_A58 Transcription factor II B (TFIIB); zinc ribbon, ge 81.59
3sgi_A 615 DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tub 80.02
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A* Back     alignment and structure
Probab=93.54  E-value=0.058  Score=51.60  Aligned_cols=27  Identities=33%  Similarity=0.589  Sum_probs=22.6

Q ss_pred             HHHHhhhc-CCCccChHHHHHHHHHHhh
Q 020384          148 EASMAYVA-GKPIMSDEEYDKLKQKLKM  174 (327)
Q Consensus       148 EA~~AY~s-GkPimsDeeFD~LK~kLk~  174 (327)
                      ++-.+||. ++|+|||+|||+|..+|+.
T Consensus        15 ~~~~~YY~~d~p~IsD~eYD~L~~eL~~   42 (322)
T 3uq8_A           15 QYEYEYHVLDNPSVPDSEYDRLFHQLKA   42 (322)
T ss_dssp             HHHHHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            34557886 9999999999999999865
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A* Back     alignment and structure
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae} Back     alignment and structure
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} Back     alignment and structure
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A* Back     alignment and structure
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2 Back     alignment and structure
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2 Back     alignment and structure
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} Back     alignment and structure
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4 Back     alignment and structure
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 Back     alignment and structure
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6 Back     alignment and structure
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Back     alignment and structure
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b Back     alignment and structure
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A* Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} Back     alignment and structure
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2 Back     alignment and structure
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A* Back     alignment and structure
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A* Back     alignment and structure
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} Back     alignment and structure
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ... Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A Back     alignment and structure
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 327
d1b04a_ 312 d.142.2.2 (A:) Adenylation domain of NAD+-dependen 8e-05
d1b04a_312 d.142.2.2 (A:) Adenylation domain of NAD+-dependen 2e-04
d1ta8a_ 313 d.142.2.2 (A:) Adenylation domain of NAD+-dependen 1e-04
d1ta8a_313 d.142.2.2 (A:) Adenylation domain of NAD+-dependen 0.004
d1dgsa3 314 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dep 2e-04
d1dgsa3314 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dep 0.001
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} Length = 312 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
family: Adenylation domain of NAD+-dependent DNA ligase
domain: Adenylation domain of NAD+-dependent DNA ligase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 153 YVAGKPIMSDEEYDKLKQKLK 173
           YV  +P + D EYD+L Q+L 
Sbjct: 24  YVLDRPSVPDAEYDRLMQELI 44
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} Length = 312 Back     information, alignment and structure
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} Length = 313 Back     information, alignment and structure
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} Length = 313 Back     information, alignment and structure
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} Length = 314 Back     information, alignment and structure
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} Length = 314 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
d1ta8a_ 313 Adenylation domain of NAD+-dependent DNA ligase {E 96.51
d1b04a_ 312 Adenylation domain of NAD+-dependent DNA ligase {B 96.4
d1dgsa3 314 Adenylation domain of NAD+-dependent DNA ligase {T 95.64
d1ta8a_313 Adenylation domain of NAD+-dependent DNA ligase {E 95.33
d1b04a_312 Adenylation domain of NAD+-dependent DNA ligase {B 95.1
d1qxfa_58 Ribosomal protein S27e {Archaeon Archaeoglobus ful 92.98
d1dgsa3314 Adenylation domain of NAD+-dependent DNA ligase {T 92.93
d1pfva335 Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch 87.01
d1rqga335 Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro 86.03
d1s3ga235 Microbial and mitochondrial ADK, insert "zinc fing 83.68
d1zina235 Microbial and mitochondrial ADK, insert "zinc fing 81.4
d1akya238 Microbial and mitochondrial ADK, insert "zinc fing 80.95
d1d0qa_102 Zinc-binding domain of DNA primase {Bacillus stear 80.08
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
family: Adenylation domain of NAD+-dependent DNA ligase
domain: Adenylation domain of NAD+-dependent DNA ligase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.51  E-value=0.00089  Score=59.36  Aligned_cols=28  Identities=29%  Similarity=0.383  Sum_probs=23.6

Q ss_pred             HHHHHhhh-cCCCccChHHHHHHHHHHhh
Q 020384          147 LEASMAYV-AGKPIMSDEEYDKLKQKLKM  174 (327)
Q Consensus       147 LEA~~AY~-sGkPimsDeeFD~LK~kLk~  174 (327)
                      -++-.+|| .|+|+|||+|||.|+.+|+.
T Consensus        19 ~~~~~~Yy~~~~p~iSD~eYD~L~~~L~~   47 (313)
T d1ta8a_          19 NQYSHEYYVKDQPSVEDYVYDRLYKELVD   47 (313)
T ss_dssp             HHHHHHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            34566788 59999999999999999975
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure