Citrus Sinensis ID: 020408

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MKFASLYDLVVLLVYEITFFFLFSPIIEGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGGVY
Secondary Structure (PSIPRED)
cccccccccHHHHHccccccccccccccccccccHHHHHHHHHHHccccccccccccccccEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcEEEcccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccHHHHcccccHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKFASLYDLVVLLVYEITFFFLfspiiegsTAVKHVEQAKKSTERKRKnqyrgirqrpwgkwaaeirdptKGVRVWLGTFNTAEEAARAYDAEARRIRgkkakvnfpdetpaaapkssvkansqksvpkaclspvqpslnqnfnylnnsdqdyynnvsileekpqvnqygymgsfpddgelgfkpfvptaddtpvyfnsdqgsnsfdcsdfgwgeqapktpeissvleatpevdesqfvdavanpmkklksnsenavpvqdnngksLSDELLAFdnqvkflpmpypegsweASLDAFlngdntqdggnlmnlwsfddfpstlggvy
Flexible Loop (DISEMBL)
MKFASLYDLVVLLVYEITFFFLFSPIIEGSTAVKHVEqakksterkrknqyrgirqrpwgkwaaeirdptkgvRVWLGTFNTAEEAARAYDAEARrirgkkakvnfpdetpaaapkssvkansqKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKklksnsenavpvqdnNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGnlmnlwsfddfpstlggvy
Low Complexity Region (SEG)
MKFASLYDLVVLLVYEITFFFLFSPIIEGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTaeeaaraydaearrIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGGVY
Disordered region (IsUnstruct)
***ASLYDLVVLLVYEITFFFLFSPIIEGSTAV*******************GIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARA****************************************************NFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFN*******FDCSDFGW*********************************************************LLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDF********
Disordered Region (DISOPRED)
*******DLVVLLVYE**************************************RQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPD************************************************************************************************SFDCSDFGWGEQAPKTPEISSVLEATPEVDESQF******************************DELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGGVY
Disordered Region (DISEMBL)
MKFASLYDLVVLLVYEITFFFLFSPIIEGSTAV*******************GIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDE*********************CLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKK**********VQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGGVY
Disordered Region (DISPRO)
*KFASLYDLVVLLVYEIT*****************************KNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDETPAAA*************************************************PQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKK****SENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGGVY
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFASLYDLVVLLVYEITFFFLFSPIIEGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGGVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q6K7E6	365	Ethylene-responsive trans	no	no	0.757	0.676	0.484	2e-53
Q9SSA8	358	Ethylene-responsive trans	yes	no	0.773	0.703	0.493	4e-49
Q9LUM4	379	Ethylene-responsive trans	no	no	0.803	0.691	0.483	5e-49
P42736	248	Ethylene-responsive trans	no	no	0.398	0.524	0.477	2e-27
Q8H0T5	211	Ethylene-responsive trans	no	no	0.248	0.383	0.654	2e-26
O22259	171	Ethylene-responsive trans	no	no	0.211	0.403	0.753	1e-25
P93007	218	Ethylene-responsive trans	no	no	0.282	0.422	0.567	2e-21
Q9LYU3	212	Ethylene-responsive trans	no	no	0.220	0.339	0.625	7e-21
Q9FH54	248	Ethylene-responsive trans	no	no	0.196	0.258	0.671	1e-20
Q9ZWA2	245	Ethylene-responsive trans	no	no	0.196	0.261	0.656	5e-20

>sp|Q6K7E6|ERF1_ORYSJ Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/287 (48%), Positives = 176/287 (61%), Gaps = 40/287 (13%)

Query: 39  AKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIR 98
           A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+AEEAARAYDAEARRIR
Sbjct: 108 AAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIR 167

Query: 99  GKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVS 158
           GKKAKVNFP E P  A K    + + K+ PK+ +   +P++   FN L N++   Y + +
Sbjct: 168 GKKAKVNFP-EAPTTAQKRRAGSTTAKA-PKSSVE-QKPTVKPAFNNLANANAFVYPSAN 224

Query: 159 ILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADD-TPV---YFNSDQGSNSFDCSDFGWG 214
               KP V         PD+      PFVP  +   P+     NSDQGSNSF CSDFGW 
Sbjct: 225 FTSNKPFVQ--------PDN-----MPFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW- 270

Query: 215 EQAPKTPEISSV--LEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELL 272
           E   KTP+I+S+  +    EVDES F+ +  NPM           PV +N+   L D   
Sbjct: 271 ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM---------VPPVMENSAVDLPD--- 318

Query: 273 AFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFP 319
             +  ++FL     +G+ + S+D+ LN D +QD  + M+LWSFDD P
Sbjct: 319 -LEPYMRFL---LDDGAGD-SIDSLLNLDGSQDVVSNMDLWSFDDMP 360

Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SSA8|RA212_ARATH Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1

 Score =  195 bits (495), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 156/316 (49%), Positives = 181/316 (57%), Gaps = 64/316 (20%)

Query: 24  SPIIEGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGT 79
           S   EGS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGT
Sbjct: 94  SAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGT 153

Query: 80  FNTAEEAARAYDAEARRIRGKKAKVNFPDET-PAAAPKSSVKANSQKSVPKACLSPVQPS 138
           F TAEEAARAYDA ARRIRG KAKVNFP+E   A + K SVKAN QK V K   +P  P+
Sbjct: 154 FKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNP-SPA 212

Query: 139 LNQNFNYLNNSDQDYYNNVSILEEKPQV-----NQYGYMGSFPDDGELGFKPFVPTADDT 193
           L QN N         + N+  +EEK QV     NQ+G   S  D G  G++         
Sbjct: 213 LVQNSNI-------SFENMCFMEEKHQVSNNNNNQFGMTNSV-DAGCNGYQ--------- 255

Query: 194 PVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNS 253
             YF+SDQGSNSFDCS+FGW +QAP TP+ISS   A    + S      ANP KKLKS  
Sbjct: 256 --YFSSDQGSNSFDCSEFGWSDQAPITPDISS---AVINNNNSALFFEEANPAKKLKS-- 308

Query: 254 ENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGD--NTQD-GGNLM 310
                             + F+        PY    W+ASLD FLN D   TQD G N M
Sbjct: 309 ------------------MDFE-------TPYNNTEWDASLD-FLNEDAVTTQDNGANPM 342

Query: 311 NLWSFDDFPSTLGGVY 326
           +LWS D+  S +GGV+
Sbjct: 343 DLWSIDEIHSMIGGVF 358

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUM4|RAP22_ARATH Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=1 SV=2

 Score =  194 bits (494), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 147/304 (48%), Positives = 187/304 (61%), Gaps = 42/304 (13%)

Query: 32  AVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYD 91
            V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+TAEEAARAYD
Sbjct: 109 TVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYD 168

Query: 92  AEARRIRGKKAKVNFPDE---TPAAAPKSSVKANS-QKSV--PKACLSPVQPSLNQNFNY 145
           A ARRIRG KAKVNFP+E   +  +  + S K N+ QKSV  P   ++ VQ   + +  Y
Sbjct: 169 AAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQY 228

Query: 146 LNNSDQDYYNNVSILEEKPQV--NQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGS 203
            NNS  + + ++S +EEKPQ+  NQ+G   SF   G  G++           YF+SDQGS
Sbjct: 229 CNNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQ-----------YFSSDQGS 277

Query: 204 NSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNN 263
           NSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+         
Sbjct: 278 NSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEET-NAAKKLKPNSDE-------- 325

Query: 264 GKSLSDELLAF-DNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTL 322
               SD+L+A+ DN +   P+       EA L A   G  TQ+  N + LWS D+    L
Sbjct: 326 ----SDDLMAYLDNALWDTPLEV-----EAMLGADA-GAVTQEEENPVELWSLDEINFML 375

Query: 323 GGVY 326
            G +
Sbjct: 376 EGDF 379

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P42736|RAP23_ARATH Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 84/153 (54%), Gaps = 23/153 (15%)

Query: 32  AVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYD 91
           AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNTAEEAA AYD
Sbjct: 60  AVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYD 119

Query: 92  AEARRIRGKKAKVNFPD-------------------ETPAAAPKSSVKAN----SQKSVP 128
             A++IRG KAK+NFPD                   + P A     V  +    SQ S P
Sbjct: 120 VAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSFP 179

Query: 129 KACLSPVQPSLNQNFNYLNNSDQDYYNNVSILE 161
             C+        QN +Y    D D    +S LE
Sbjct: 180 VECIGFGNGDEFQNLSYGFEPDYDLKQQISSLE 212

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H0T5|ERF73_ARATH Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 69/84 (82%), Gaps = 3/84 (3%)

Query: 44  ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAK 103
           ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNTAEEAARAYD EA+RIRG KAK
Sbjct: 18  KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAK 77

Query: 104 VNFPDETPAAAPKSSVKANSQKSV 127
           +NFP+E+     K   KA + + V
Sbjct: 78  LNFPNESSG---KRKAKAKTVQQV 98

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O22259|ERF71_ARATH Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 62/69 (89%)

Query: 40  KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRG 99
           ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF TA+EAARAYD  A +IRG
Sbjct: 39  ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRG 98

Query: 100 KKAKVNFPD 108
           +KAK+NFP+
Sbjct: 99  RKAKLNFPN 107

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 66/97 (68%), Gaps = 5/97 (5%)

Query: 13  LVYEITFFFLFSPIIEGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKG 72
            V E+T   + S I + S+++   E   KS  R+R   YRG+RQRPWGKWAAEIRDP K 
Sbjct: 37  FVSELTGQPIPSSIDDQSSSLTLQE---KSNSRQR--NYRGVRQRPWGKWAAEIRDPNKA 91

Query: 73  VRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDE 109
            RVWLGTF+TAEEAA AYD  A   RG KAK+NFP+ 
Sbjct: 92  ARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEH 128

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1

 Score =  101 bits (252), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 55/72 (76%)

Query: 37  EQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARR 96
           +Q +   ++ R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF TAEEAA AYD  A +
Sbjct: 25  DQHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALK 84

Query: 97  IRGKKAKVNFPD 108
            +G KAK+NFP+
Sbjct: 85  FKGTKAKLNFPE 96

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 49/64 (76%)

Query: 47  RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNF 106
           R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF TAE AA AYD  A + +G KAK+NF
Sbjct: 86  RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145

Query: 107 PDET 110
           P+  
Sbjct: 146 PERV 149

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA2|ERF77_ARATH Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 52/64 (81%)

Query: 44  ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAK 103
           E+ ++ +YRG+R+RPWG++AAEIRDP K  RVWLG+FNT EEAARAYD+ A R RG KA 
Sbjct: 46  EKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKAT 105

Query: 104 VNFP 107
            NFP
Sbjct: 106 TNFP 109

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
62526569	381	ethylene response factor [Manihot escule	0.883	0.755	0.697	1e-113
225442001	379	PREDICTED: ethylene-responsive transcrip	0.904	0.778	0.668	1e-112
339649137	385	ethylene-responsive transcription factor	0.883	0.748	0.684	1e-110
38343926	378	ethylene transcription factor [Fagus syl	0.941	0.812	0.662	1e-110
289466347	376	ERF2 transcription factor [Vitis pseudor	0.892	0.773	0.661	1e-109
255585060	383	Ethylene-responsive transcription factor	0.880	0.749	0.666	1e-107
50429207	319	ethylene response factor 1 [Gossypium ba	0.950	0.971	0.614	1e-106
292668899	387	AP2 domain class transcription factor [M	0.904	0.762	0.653	1e-106
222427675	381	ethylene responsive transcription factor	0.892	0.763	0.650	1e-104
239937658	388	ethylene signal transcription factor [Mo	0.907	0.762	0.645	1e-104

>gi|62526569|gb|AAX84670.1| ethylene response factor [Manihot esculenta]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/301 (69%), Positives = 245/301 (81%), Gaps = 13/301 (4%)

Query: 29  GSTAVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEE 85
           GSTAVK VE    A+KS +RKRKNQYRGIRQRPWGKWAAEIRDP KGVRVWLGTFNTAEE
Sbjct: 91  GSTAVKSVEFNGLAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 150

Query: 86  AARAYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNY 145
           AARAYDAEARRIRGKKAKVNFPDE P A+PK ++KAN QK +PK        +  ++ +Y
Sbjct: 151 AARAYDAEARRIRGKKAKVNFPDEAPRASPKRTMKANPQKPLPKR-------NATESMSY 203

Query: 146 LNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNS 205
           LNN DQDY+N +  ++EKP V+Q+  M SFP +G+   K  +P  D+ P +FNSDQGSNS
Sbjct: 204 LNNPDQDYFNTLGSVDEKPLVSQFDLMDSFPANGDATVKS-IPPCDNVPTFFNSDQGSNS 262

Query: 206 FDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGK 265
           F+CSDFGWGEQA KTPEISSVL ATPE+DES F+D  ANP KK+KS+SENAVP++++NGK
Sbjct: 263 FECSDFGWGEQASKTPEISSVLSATPEIDESLFMDD-ANPKKKMKSDSENAVPIEESNGK 321

Query: 266 SLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGGV 325
           SLS+ELLAFDNQ+ F  MPY EGSWEASLD FLNGD TQDGGN M+LWSFDD P+ +GGV
Sbjct: 322 SLSEELLAFDNQMNFQ-MPYLEGSWEASLDGFLNGDVTQDGGNPMDLWSFDDLPNMVGGV 380

Query: 326 Y 326
           Y
Sbjct: 381 Y 381

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442001|ref|XP_002267008.1| PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Vitis vinifera]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/302 (66%), Positives = 245/302 (81%), Gaps = 7/302 (2%)

Query: 28  EGSTAVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAE 84
            G T +K VE   QA+KS +RKRKNQYRGIRQRPWGKWAAEIRDP KGVRVWLGTFNTAE
Sbjct: 82  HGYTGIKSVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 141

Query: 85  EAARAYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFN 144
           EAARAYDAEARRIRGKKAKVNFPDETP  APK ++KAN+QK +PK   +    +LNQ+FN
Sbjct: 142 EAARAYDAEARRIRGKKAKVNFPDETPLTAPKRTIKANAQKLIPKGSPNSSHSNLNQSFN 201

Query: 145 YLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSN 204
           ++NNSDQ+YY+  S+++EKP  NQYGY  SFP +GE+G K   P+ ++  +YFNSDQGSN
Sbjct: 202 FMNNSDQEYYS--SLMDEKPSTNQYGYPDSFPANGEVGLKSLAPS-ENGRMYFNSDQGSN 258

Query: 205 SFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNG 264
           SFDCSD GWGEQ  KTPEISSVL AT E DESQF++  ANP KKLKSNS+NAVPV++N  
Sbjct: 259 SFDCSDLGWGEQGAKTPEISSVLSATLEGDESQFIED-ANPKKKLKSNSQNAVPVEENTP 317

Query: 265 KSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGG 324
             LS++L AF++Q+K+  +PY +G+WEAS+DA L+GD  QDGGN M+LWSFDD P+ +GG
Sbjct: 318 NGLSEDLSAFESQMKYFQIPYLDGNWEASMDALLSGDAAQDGGNPMDLWSFDDLPTVVGG 377

Query: 325 VY 326
           V+
Sbjct: 378 VF 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|339649137|gb|AEJ87198.1| ethylene-responsive transcription factor [Jatropha curcas]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/301 (68%), Positives = 239/301 (79%), Gaps = 13/301 (4%)

Query: 29  GSTAVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEE 85
           GS AVK VE   QA+KS +RKRKNQYRGIRQRPWGKWAAEIRDP KGVRVWLGTFNTAEE
Sbjct: 95  GSAAVKSVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 154

Query: 86  AARAYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNY 145
           AARAYDAEARRIRGKKAKVNFP+E P A+PK   KANSQKS+ K  L+       +N NY
Sbjct: 155 AARAYDAEARRIRGKKAKVNFPEEAPHASPKRPSKANSQKSLGKTNLA-------ENLNY 207

Query: 146 LNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNS 205
           L+N +QDY+N++  +EEKP V+Q+G M S P +G+       P+ D+ P+YFNSDQGSNS
Sbjct: 208 LDNPEQDYFNSMGFVEEKPPVSQFGIMDSLPVNGDAVVNSITPS-DNVPMYFNSDQGSNS 266

Query: 206 FDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGK 265
           F+CSD GW EQA KTPEISSVL ATPE+DES F++  ANP KKLKS+S N  P ++NNGK
Sbjct: 267 FECSDIGWAEQAAKTPEISSVLSATPEIDESLFIED-ANPKKKLKSDSGNEAPAEENNGK 325

Query: 266 SLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGGV 325
           SLSDELLAF+NQ+ +  MPY EGSWEASLD+FLNGD TQDGGN M+LWSFDD    +GGV
Sbjct: 326 SLSDELLAFENQMNYQ-MPYLEGSWEASLDSFLNGDTTQDGGNPMDLWSFDDLAGMVGGV 384

Query: 326 Y 326
           Y
Sbjct: 385 Y 385

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38343926|emb|CAE54591.1| ethylene transcription factor [Fagus sylvatica]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/317 (66%), Positives = 250/317 (78%), Gaps = 10/317 (3%)

Query: 12  LLVYEITFFFLFSPIIEGSTAVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAEIRD 68
           +LV ++  F   +P   GS  VK VE   QA+KS +RKRKNQYRGIRQRPWGKWAAEIRD
Sbjct: 68  VLVQDVKPFTFSAPPSSGSKPVKSVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRD 127

Query: 69  PTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQKSVP 128
           P KGVRVWLGTFNTAE+AARAYDAEARRIRGKKAKVNFPDETP A+PK SVKAN QK + 
Sbjct: 128 PRKGVRVWLGTFNTAEKAARAYDAEARRIRGKKAKVNFPDETPRASPKRSVKANLQKPLA 187

Query: 129 KACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVP 188
           KA L+ VQP+LNQNFN++NNSDQDY   + ++EEKP  NQYGYM S P + ++G KPF  
Sbjct: 188 KANLNSVQPNLNQNFNFMNNSDQDY--TMGLMEEKPFTNQYGYMDSIPANADVGLKPFA- 244

Query: 189 TADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKK 248
            +++T  YFNSDQGSNSFDCSD+GWGEQ  KTPEISSVL AT E DESQFV+  A P KK
Sbjct: 245 -SNNTTPYFNSDQGSNSFDCSDYGWGEQGSKTPEISSVLSATLEGDESQFVED-AMPTKK 302

Query: 249 LKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGN 308
           LKS+S NAV +++N  K+LS+EL AF++Q+ F  MP+ EGSWE++++A  +GD TQD GN
Sbjct: 303 LKSDSGNAVFIENNTAKTLSEELSAFESQMNF-QMPFLEGSWESNMEALFSGDTTQD-GN 360

Query: 309 LMNLWSFDDFPSTLGGV 325
            M+LWSFDD P   GGV
Sbjct: 361 SMDLWSFDDLPVMAGGV 377

Source: Fagus sylvatica

Species: Fagus sylvatica

Genus: Fagus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289466347|gb|ADC94859.1| ERF2 transcription factor [Vitis pseudoreticulata]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/298 (66%), Positives = 241/298 (80%), Gaps = 7/298 (2%)

Query: 32  AVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAAR 88
            +K VE   QA+KS +RKRKNQYRGIRQRPWGKWAAEIRDP KGVRVWLGTFNTAEEAAR
Sbjct: 83  GIKSVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAR 142

Query: 89  AYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNN 148
           AYDAEARRIRGKKAKVNFPDETP  APK ++KAN+QK +PK   +P   +LNQ+FN++NN
Sbjct: 143 AYDAEARRIRGKKAKVNFPDETPLTAPKRTIKANAQKLIPKGSPNPSHSNLNQSFNFMNN 202

Query: 149 SDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDC 208
           SDQ+YY+  S+++EKP  NQ+GY  SFP +GE+G K   P+ ++  +YFNSDQGSNSFDC
Sbjct: 203 SDQEYYS--SLMDEKPSTNQHGYPDSFPANGEVGLKSLAPS-ENGRMYFNSDQGSNSFDC 259

Query: 209 SDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLS 268
           SD GWGEQ  KTPEISSVL AT E DES F++  A+P KKLKSNS+NAVPV++N    L 
Sbjct: 260 SDLGWGEQGAKTPEISSVLSATLEGDESLFIED-ASPKKKLKSNSQNAVPVEENTPNGLF 318

Query: 269 DELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGGVY 326
           ++L AF++Q+K+  +PY +GSWEAS+D  L+GD  QDGGN M+LWSFDD P+ +GGV+
Sbjct: 319 EDLSAFESQMKYFQIPYLDGSWEASMDPLLSGDAAQDGGNPMDLWSFDDLPTVVGGVF 376

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585060|ref|XP_002533237.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223526935|gb|EEF29138.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/306 (66%), Positives = 243/306 (79%), Gaps = 19/306 (6%)

Query: 24  SPIIEGSTAVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTF 80
           S +  G T VK VE   QA+KS +RKRKNQYRGIRQRPWGKWAAEIRDP KGVRVWLGTF
Sbjct: 94  SAVSRGPTPVKTVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTF 153

Query: 81  NTAEEAARAYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLN 140
           NTAEEAARAYDAEARRIRGKKAKVNFPDE P A+ K SVKA+ QKS+ K         +N
Sbjct: 154 NTAEEAARAYDAEARRIRGKKAKVNFPDEAPRASTKPSVKASPQKSLSKT-------KMN 206

Query: 141 QNFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSD 200
           + F+YLNN++QDY+N++  ++EKP V+Q+G M SFP +G+ G K       + P+YFNSD
Sbjct: 207 ETFSYLNNTEQDYFNSLGFVDEKPPVSQFGLMDSFPTNGDSGVK------SNFPMYFNSD 260

Query: 201 QGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQ 260
           QGSNSFDCSDFGWGE A KTPEISS+L ATPE+DES FV+  ANP K++KS+S + +PV+
Sbjct: 261 QGSNSFDCSDFGWGEHASKTPEISSMLSATPEIDESLFVED-ANPKKRMKSDSGDVMPVE 319

Query: 261 DNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPS 320
           D NGKSLS+ELLAFDNQ  F  +PY EG+WE SL++FLNGD TQDGGN ++LWSFDD PS
Sbjct: 320 D-NGKSLSEELLAFDNQENFQ-VPYLEGNWETSLESFLNGDTTQDGGNPVDLWSFDDLPS 377

Query: 321 TLGGVY 326
            +GGVY
Sbjct: 378 LVGGVY 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50429207|gb|AAT77192.1| ethylene response factor 1 [Gossypium barbadense]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/322 (61%), Positives = 251/322 (77%), Gaps = 12/322 (3%)

Query: 9   LVVLLVYEITFFFLFSPIIEGSTAVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAE 65
           L  +  Y+I FFFL S IIEGS + K ++   QA+K  +RKRKNQYRGIRQRPWGKWAAE
Sbjct: 6   LWFMYPYDIKFFFLCS-IIEGSNSEKSMQFDGQAEKCAKRKRKNQYRGIRQRPWGKWAAE 64

Query: 66  IRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQK 125
           IRDP KGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFP+ETP  +PK +VK NSQK
Sbjct: 65  IRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPNETPRTSPKHAVKTNSQK 124

Query: 126 SVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKP 185
            + K+ LSPVQ +L+QN+NYL+  +Q+Y++ +  +EEKP VNQ+ Y+   P   + G   
Sbjct: 125 PLSKSNLSPVQLNLDQNYNYLSQPEQEYFDTMGFVEEKPLVNQFAYVDPVPTSIDAGSN- 183

Query: 186 FVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANP 245
               +D+ P+YFNSDQGSNS +CSD+GWGEQ  +TPEISS+LEA+  V   +F++  ANP
Sbjct: 184 ---QSDNAPLYFNSDQGSNSINCSDYGWGEQGARTPEISSILEAS--VVGEEFLED-ANP 237

Query: 246 MKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPM-PYPEGSWEASLDAFLNGDNTQ 304
            KKLK +S+N +P +DN+ K+LSDELLA DNQ+K+  M P+ EG+W+A++DAFLNGD TQ
Sbjct: 238 SKKLKPSSDNVMPAEDNSAKTLSDELLALDNQMKYFQMPPFIEGNWDATIDAFLNGDATQ 297

Query: 305 DGGNLMNLWSFDDFPSTLGGVY 326
           DGGN M+LW+FDDFP+   GV+
Sbjct: 298 DGGNPMDLWNFDDFPTMAEGVF 319

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668899|gb|ADE41104.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/303 (65%), Positives = 239/303 (78%), Gaps = 8/303 (2%)

Query: 28  EGSTAVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAE 84
            GSTAVK VE   QA+KS +RKRKNQYRGIRQRPWGKWAAEIRDP KGVRVWLGTFNTAE
Sbjct: 89  RGSTAVKSVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 148

Query: 85  EAARAYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFN 144
           EAARAYDAEARRIRGKKAKVNFP+ETP A+ K SVKANSQK +PK  ++  + +LNQNFN
Sbjct: 149 EAARAYDAEARRIRGKKAKVNFPEETPRASAKRSVKANSQKLIPKTNVNGTESNLNQNFN 208

Query: 145 YLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSN 204
           ++N+S QDYY+ +  L+EKP +N +GYM +F  +G++  K   P+ D  P Y +SDQGSN
Sbjct: 209 FVNDSSQDYYSALGFLDEKPTLNNFGYMSTFLANGDVALKSSTPS-DPAPFYLSSDQGSN 267

Query: 205 SFDCSDFGWGEQAPKTPEISSVLEAT-PEVDESQFVDAVANPMKKLKSNSENAVPVQDNN 263
           SFDCSDFGWGEQ  KTPEISSVL +   E D+S F++  ANP KKLK NS++ V  QDN 
Sbjct: 268 SFDCSDFGWGEQGSKTPEISSVLSSVMEETDDSLFLED-ANPTKKLKPNSQDLVLPQDNA 326

Query: 264 GKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLG 323
           GK+LSDEL AF  ++K+   PY +GSW+AS+DAFLNGD TQDGGN  +LW+FDD P+ +G
Sbjct: 327 GKTLSDELSAF--EMKYFQTPYLDGSWDASVDAFLNGDATQDGGNPGDLWTFDDLPAIVG 384

Query: 324 GVY 326
           G +
Sbjct: 385 GTF 387

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222427675|gb|ACM49847.1| ethylene responsive transcription factor 2a [Prunus salicina]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/303 (65%), Positives = 238/303 (78%), Gaps = 12/303 (3%)

Query: 28  EGSTAVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAE 84
            GST VK VE   QA+KS +RKRKNQYRGIRQRPWGKWAAEIRDP KGVRVWLGTFNTAE
Sbjct: 87  RGSTTVKSVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 146

Query: 85  EAARAYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFN 144
           EAARAYD+EARRIRGKKAKVNFPDETP ++ K SVKA SQK +PK  ++ +QP+LNQN N
Sbjct: 147 EAARAYDSEARRIRGKKAKVNFPDETPRSSAKRSVKA-SQKMLPKTNMNAIQPNLNQNIN 205

Query: 145 YLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSN 204
           ++++ +QDYYN +  L+EKP  N +G+M +FP +GE+  K   P+ D  P+YF+SDQGSN
Sbjct: 206 FVHDPNQDYYNAMGFLDEKPATNDFGFMSTFPANGEVVLKSSAPS-DAVPLYFSSDQGSN 264

Query: 205 SFDCSDFGWGEQAPKTPEISSVLEAT-PEVDESQFVDAVANPMKKLKSNSENAVPVQDNN 263
           SFDCSDFGWGEQ  KTPEISSVL +   E D+S F++  ANP KKLKSN E+ VPVQDN 
Sbjct: 265 SFDCSDFGWGEQGSKTPEISSVLSSVMEESDDSLFLED-ANPTKKLKSNPEDLVPVQDNA 323

Query: 264 GKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLG 323
           GK+LSDEL AF  ++K+   PY  GSW+AS+DAFL+ D TQDGGN ++ WSFDD    +G
Sbjct: 324 GKTLSDELSAF--EMKYFQTPYLGGSWDASVDAFLSADATQDGGNSVDFWSFDDL---IG 378

Query: 324 GVY 326
           G +
Sbjct: 379 GGF 381

Source: Prunus salicina

Species: Prunus salicina

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239937658|gb|ACS35626.1| ethylene signal transcription factor [Morus alba]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/302 (64%), Positives = 233/302 (77%), Gaps = 6/302 (1%)

Query: 29  GSTAVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEE 85
           GST VK+ E   QA+KS +RKRKNQYRGIRQRPWGKWAAEIRDP KGVRVWLGTFNTAEE
Sbjct: 89  GSTTVKYTESDGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 148

Query: 86  AARAYDAEARRIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSL-NQNFN 144
           AARAYDAEARRIRGKKAKVNFPDETP A PK  VK + ++S+PK   +  + +L NQ+FN
Sbjct: 149 AARAYDAEARRIRGKKAKVNFPDETPRALPKHPVKESPKRSLPKENSNSTESNLNNQSFN 208

Query: 145 YLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSN 204
            +NNSD DYYN +  LEEKP  NQY ++ + P   ++G K   P A  TP+YF+SDQGSN
Sbjct: 209 SVNNSDLDYYNAMGFLEEKPLTNQYEHVETLPAKADVGLKSNAPAA-TTPLYFSSDQGSN 267

Query: 205 SFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNG 264
           SF+CSDFG GE   KTPEISSV  AT E D+S F++   NP KKLKS+SENAV  ++N+ 
Sbjct: 268 SFECSDFGLGEHGSKTPEISSVFSATSENDDSLFLEDT-NPTKKLKSDSENAVLPEENHA 326

Query: 265 KSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGG 324
           K+LS+EL AF++Q+KF  MPY EGSW+A LD FL GD+TQDGGN +NLWSFDDF +  G 
Sbjct: 327 KTLSEELSAFESQMKFFQMPYLEGSWDALLDTFLAGDSTQDGGNSINLWSFDDFSTVSGE 386

Query: 325 VY 326
            +
Sbjct: 387 AF 388

Source: Morus alba

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2197076	358	RAP2.12 "related to AP2 12" [A	0.564	0.513	0.5	6.1e-52
UNIPROTKB|Q5MFV3	399	BIERF1 "BTH-induced ERF transc	0.840	0.686	0.425	4.1e-49
TAIR|locus:2090975	379	RAP2.2 "related to AP2 2" [Ara	0.641	0.551	0.491	6.7e-49
TAIR|locus:2061956	171	ERF71 "ethylene response facto	0.211	0.403	0.623	3e-24
TAIR|locus:2089368	248	EBP "ethylene-responsive eleme	0.389	0.512	0.455	1.8e-23
UNIPROTKB|Q5MFV0	329	BIERF4 "BTH-induced ERF transc	0.398	0.395	0.35	3.5e-22
TAIR|locus:2194007	262	ERF73 "ethylene response facto	0.423	0.526	0.377	8e-21
TAIR|locus:2018635	192	RAP2.6 "related to AP2 6" [Ara	0.248	0.421	0.535	2.5e-19
TAIR|locus:2183304	263	AT5G07310 [Arabidopsis thalian	0.319	0.395	0.446	2.8e-18
TAIR|locus:2116224	268	RRTF1 "redox responsive transc	0.306	0.373	0.462	4.6e-18

TAIR|locus:2197076 RAP2.12 "related to AP2 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
 Identities = 107/214 (50%), Positives = 125/214 (58%)

Query:    24 SPIIEGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGT 79
             S   EGS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGT
Sbjct:    94 SAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGT 153

Query:    80 FNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAA-APKSSVKANSQKSVPKACLSPVQPS 138
             F T              IRG KAKVNFP+E   A + K SVKAN QK V K   +P  P+
Sbjct:   154 FKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNP-SPA 212

Query:   139 LNQNFNYLNNSDQDYYNNVSILEEKPQV-----NQYGYMGSFPDDGELGFKPFVPTADDT 193
             L QN N         + N+  +EEK QV     NQ+G   S  D G  G++         
Sbjct:   213 LVQNSNIS-------FENMCFMEEKHQVSNNNNNQFGMTNSV-DAGCNGYQ--------- 255

Query:   194 PVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVL 227
               YF+SDQGSNSFDCS+FGW +QAP TP+ISS +
Sbjct:   256 --YFSSDQGSNSFDCSEFGWSDQAPITPDISSAV 287

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0070483 "detection of hypoxia" evidence=IEP

UNIPROTKB|Q5MFV3 BIERF1 "BTH-induced ERF transcriptional factor 1" [Oryza sativa Indica Group (taxid:39946)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 125/294 (42%), Positives = 163/294 (55%)

Query:    33 VKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXX 92
             V+H     +S +RKRKNQYRGIRQRPWGKWAAEIRDP+KGVRVWLGT+NT          
Sbjct:   121 VQHDGPTARSAKRKRKNQYRGIRQRPWGKWAAEIRDPSKGVRVWLGTYNTAEEAARAYDA 180

Query:    93 XXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQD 152
                 IRGKKAKVNFPDE PA A K S+K N+ K    A   P++   +  F  LN+SD D
Sbjct:   181 EARKIRGKKAKVNFPDE-PAVAQKLSLKQNAAKQEKLA--PPLKSCGDDAFFQLNSSDND 237

Query:   153 YYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFG 212
              +  ++ +  KP         + P D     KP   T +   +   SD  SNSF  SDFG
Sbjct:   238 LFAMLAKVPAKP---------AEPVDLMPPVKPLAST-ETFEMNMLSDTSSNSFGSSDFG 287

Query:   213 WGEQAPKTPEISSVL---EATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSD 269
             W E    TP+ +SV     A P   E  ++   A P K++++N   AVP Q N   +L+ 
Sbjct:   288 W-EDDTLTPDYTSVFVPNAAMPAYGEPAYLTGGA-P-KRMRNNYGIAVP-QGNGMPNLAQ 343

Query:   270 ELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLG 323
              +  FD ++K+LP+PY E S + S+D  L  D TQDG +   +WS D+     G
Sbjct:   344 NMPTFDPEMKYLPLPYVESSSDESMDNLLQNDATQDGASNEGIWSLDELLMAAG 397

GO:0009620 "response to fungus" evidence=IEP

TAIR|locus:2090975 RAP2.2 "related to AP2 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 114/232 (49%), Positives = 145/232 (62%)

Query:    33 VKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXX 92
             V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T          
Sbjct:   110 VESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDA 169

Query:    93 XXXXIRGKKAKVNFPDE-TPAAAPKS--SVKANS-QKSV--PKACLSPVQPSLNQNFNYL 146
                 IRG KAKVNFP+E  P+   +   S K N+ QKSV  P   ++ VQ   + +  Y 
Sbjct:   170 AARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQYC 229

Query:   147 NNSDQDYYNNVSILEEKPQV--NQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSN 204
             NNS  + + ++S +EEKPQ+  NQ+G   SF   G  G++           YF+SDQGSN
Sbjct:   230 NNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQ-----------YFSSDQGSN 278

Query:   205 SFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENA 256
             SFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+ +
Sbjct:   279 SFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEET-NAAKKLKPNSDES 326

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2061956 ERF71 "ethylene response factor 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 43/69 (62%), Positives = 51/69 (73%)

Query:    40 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRG 99
             ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG
Sbjct:    39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRG 98

Query:   100 KKAKVNFPD 108
             +KAK+NFP+
Sbjct:    99 RKAKLNFPN 107

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0034059 "response to anoxia" evidence=IGI

TAIR|locus:2089368 EBP "ethylene-responsive element binding protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 62/136 (45%), Positives = 76/136 (55%)

Query:    32 AVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXX 91
             AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT         
Sbjct:    60 AVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYD 119

Query:    92 XXXXXIRGKKAKVNFPD--ETPA---AAPKSSVKANSQKSVPKACL-SPVQPSLNQ-NF- 143
                  IRG KAK+NFPD    P      P SS ++  Q    K C+ S  +  L+Q +F 
Sbjct:   120 VAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSFP 179

Query:   144 -NYLNNSDQDYYNNVS 158
                +   + D + N+S
Sbjct:   180 VECIGFGNGDEFQNLS 195

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;IMP;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0051707 "response to other organism" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0008219 "cell death" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

UNIPROTKB|Q5MFV0 BIERF4 "BTH-induced ERF transcriptional factor 4" [Oryza sativa Indica Group (taxid:39946)]

 Score = 226 (84.6 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
 Identities = 49/140 (35%), Positives = 73/140 (52%)

Query:    39 AKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIR 98
             A  S+ R++  QYRG+R+RPWGKWAAEIRDP KG+RVWLGTF                IR
Sbjct:    85 AAASSRRRKPAQYRGVRRRPWGKWAAEIRDPVKGIRVWLGTFTNAEAAALAYDDAARAIR 144

Query:    99 GKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNN-V 157
             G +AK+NFP  T     K   +A +  + P    +PV        N +   D++     +
Sbjct:   145 GDRAKLNFPSATTPDTRKRG-RATAA-AAPAVKATPV-------INLVEEEDEEEVAAAM 195

Query:   158 SILEEKPQVNQYGYMGSFPD 177
             + ++ +P+ ++     + PD
Sbjct:   196 ASIKYEPETSESSESNALPD 215

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IC

TAIR|locus:2194007 ERF73 "ethylene response factor 73" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 54/143 (37%), Positives = 77/143 (53%)

Query:    25 PIIEGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXX 84
             P +  ST   H   +    ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT  
Sbjct:    50 PFVFSSTHKHHASGSASDGKKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAE 109

Query:    85 XXXXXXXXXXXXIRGKKAKVNFPDETPA---AAPKS--SVKANSQKSVPKACLSPVQPSL 139
                         IRG KAK+NFP+E+     A  K+   V+ N +  +  A +S    S 
Sbjct:   110 EAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPSSS 169

Query:   140 NQNFNYLNNSDQDYYNNVSILEE 162
               +F +  N+      +   LE+
Sbjct:   170 CLDFLWEENNPDTLLIDTQWLED 192

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IDA

GO:0034059 "response to anoxia" evidence=IGI

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP;TAS

GO:0071369 "cellular response to ethylene stimulus" evidence=IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

TAIR|locus:2018635 RAP2.6 "related to AP2 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 45/84 (53%), Positives = 51/84 (60%)

Query:    25 PIIEGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXX 84
             P+I GS   K  E +  S ER +K  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T  
Sbjct:    38 PLITGSAVTKECESSM-SLERPKK--YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAE 94

Query:    85 XXXXXXXXXXXXIRGKKAKVNFPD 108
                          RG KAK+NFP+
Sbjct:    95 AAARAYDAAALRFRGSKAKLNFPE 118

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0034605 "cellular response to heat" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:2183304 AT5G07310 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 50/112 (44%), Positives = 57/112 (50%)

Query:    47 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNF 106
             RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NF
Sbjct:    88 RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147

Query:   107 PDETPAAAPKSSVKA--NSQKSVPKACLSPVQPSLN-QNFNYLNNSDQDYYN 155
             P+    A+  S+     N   S  +   S   P  N Q   Y N   Q YYN
Sbjct:   148 PERAQLASNTSTTTGPPNYYSSNNQIYYS--NPQTNPQTIPYFN---QYYYN 194

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2116224 RRTF1 "redox responsive transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 50/108 (46%), Positives = 59/108 (54%)

Query:    28 EGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXX 86
             E S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T    
Sbjct:   112 ESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDA 171

Query:    87 XXXXXXXXXXIRGKKAKVNFP--DET-----PAAAPKSSVKANSQKSV 127
                        RG +AK+NFP  D T     P AA     KA++  SV
Sbjct:   172 ARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAADDIGAKASASASV 219

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-35
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-33
pfam00847	53	pfam00847, AP2, AP2 domain	5e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  121 bits (306), Expect = 4e-35
 Identities = 43/58 (74%), Positives = 51/58 (87%)

Query: 50  QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFP 107
           +YRG+RQRPWGKW AEIRDP+KG RVWLGTF+TAEEAARAYD  A + RG+ A++NFP
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  116 bits (294), Expect = 2e-33
 Identities = 42/59 (71%), Positives = 50/59 (84%)

Query: 50  QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPD 108
           +YRG+RQRPWGKW AEIRDP+ G R+WLGTF+TAEEAARAYD  A ++RG  A +NFPD
Sbjct: 2   KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 65.4 bits (160), Expect = 5e-14
 Identities = 28/52 (53%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 51 YRGIRQRP-WGKWAAEIRDPT--KGVRVWLGTFNTAEEAARAYDAEARRIRG 99
          Y+G+R    WG+W AEIRDP   K  R  LGTF T EEAARA  A   ++RG
Sbjct: 3  YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.8
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.78
PHA00280	121	putative NHN endonuclease	99.56
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.07
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	95.65
cd00018	61	AP2 DNA-binding domain found in transcription regu	94.24

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.80  E-value=9.2e-20  Score=136.08  Aligned_cols=61  Identities=69%  Similarity=1.298  Sum_probs=57.1

Q ss_pred             CcceeeEECCCCeEEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHhcCCCcCCCCCCC
Q 020408           49 NQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDE  109 (326)
Q Consensus        49 S~YRGVr~r~~GKW~A~I~~p~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~~NFp~~  109 (326)
                      |+||||+++++|||+|+|+++..||++|||+|+|+||||+|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999888899999999655599999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.78  E-value=4.6e-19  Score=133.94  Aligned_cols=63  Identities=68%  Similarity=1.262  Sum_probs=59.4

Q ss_pred             cceeeEECCCCeEEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHhcCCCcCCCCCCCCCC
Q 020408           50 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDETPA  112 (326)
Q Consensus        50 ~YRGVr~r~~GKW~A~I~~p~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~~NFp~~~~~  112 (326)
                      +||||+++++|||+|+|++|.+|+++|||+|+|+||||+|||.++++++|.++++|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589998888999999999777999999999999999999999999999999999999998764

>PHA00280 putative NHN endonuclease

Probab=99.56  E-value=4.3e-15  Score=126.47  Aligned_cols=75  Identities=15%  Similarity=0.232  Sum_probs=65.8

Q ss_pred             CcchhhhhhHHHhhhhhccCCCCcceeeE-ECCCCeEEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHhcCCCcCC
Q 020408           27 IEGSTAVKHVEQAKKSTERKRKNQYRGIR-QRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKV  104 (326)
Q Consensus        27 ~~~s~~~~~~~~~~r~~~r~~~S~YRGVr-~r~~GKW~A~I~~p~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~~  104 (326)
                      ++...++..++.+|++..+.++|||+||+ ++..|||+|+|+  ++||+++||.|+++|+|+.||+ +++++||++|+.
T Consensus        45 ~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~--~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         45 DNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVT--AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             HHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEE--ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence            34455667788888888889999999995 667899999999  9999999999999999999997 788999999864

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.07  E-value=3.3e-10  Score=82.53  Aligned_cols=52  Identities=31%  Similarity=0.561  Sum_probs=44.9

Q ss_pred             CcceeeE-ECCCCeEEEEEecCC-C--CeEEeecCcccHHHHHHHHHHHHHHhcCC
Q 020408           49 NQYRGIR-QRPWGKWAAEIRDPT-K--GVRVWLGTFNTAEEAARAYDAEARRIRGK  100 (326)
Q Consensus        49 S~YRGVr-~r~~GKW~A~I~~p~-~--gkri~LGtF~T~EEAArAYD~AA~~l~G~  100 (326)
                      |+|+||+ .+..++|+|+|+++. +  +|+++||.|.+++||++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899996 556899999999632 1  49999999999999999999999999885

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=95.65  E-value=0.003  Score=47.62  Aligned_cols=27  Identities=19%  Similarity=0.047  Sum_probs=23.7

Q ss_pred             ccccccchhhheecccccccccccCCcc
Q 020408            2 KFASLYDLVVLLVYEITFFFLFSPIIEG   29 (326)
Q Consensus         2 eAA~AYD~Aalk~~g~~~~~N~~~~~~~   29 (326)
                      |||+|||+++++++|..+.+|| +..+|
T Consensus        36 eAa~Ayd~a~~~~~g~~a~~Nf-~~~~y   62 (64)
T smart00380       36 EAARAYDRAAFKFRGRSARLNF-PNSLY   62 (64)
T ss_pred             HHHHHHHHHHHHhcCCccccCC-CCccC
Confidence            7999999999999999999999 44444

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=94.24  E-value=0.012  Score=43.70  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=21.7

Q ss_pred             ccccccchhhheecccccccccc
Q 020408            2 KFASLYDLVVLLVYEITFFFLFS   24 (326)
Q Consensus         2 eAA~AYD~Aalk~~g~~~~~N~~   24 (326)
                      |||+|||.++++++|..+.+||+
T Consensus        37 eAa~Ayd~a~~~~~g~~a~~Nf~   59 (61)
T cd00018          37 EAARAYDRAALKLRGSSAVLNFP   59 (61)
T ss_pred             HHHHHHHHHHHHhcCCccccCCC
Confidence            79999999999999999999985

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	326
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-13
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		3e-13

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 50  QYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 107
            YRG+RQRPWGK+AAEIRDP K G RVWLGTF T              +RG +A +NFP
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 47  RKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVN 105
           +   YRG+RQRPWGK+AAEIRDP K G RVWLGTF T              +RG +A +N
Sbjct: 2   KGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 61
Query: 106 FP 107
           FP
Sbjct: 62  FP 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
1gcc_A	63	Ethylene responsive element binding factor 1; tran	8e-39

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  130 bits (330), Expect = 8e-39
 Identities = 42/61 (68%), Positives = 48/61 (78%), Gaps = 1/61 (1%)

Query: 50  QYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPD 108
            YRG+RQRPWGK+AAEIRDP K G RVWLGTF TAE+AA AYD  A R+RG +A +NFP 
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 109 E 109
            
Sbjct: 62  R 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.88
1gcc_A	63	Ethylene responsive element binding factor 1; tran	96.22
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	92.59
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	88.18
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	83.78

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.88  E-value=4e-23  Score=155.87  Aligned_cols=60  Identities=68%  Similarity=1.204  Sum_probs=57.0

Q ss_pred             cceeeEECCCCeEEEEEecCC-CCeEEeecCcccHHHHHHHHHHHHHHhcCCCcCCCCCCC
Q 020408           50 QYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDE  109 (326)
Q Consensus        50 ~YRGVr~r~~GKW~A~I~~p~-~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~~NFp~~  109 (326)
                      +||||+++++|||+|+|++|. +|+++|||+|+|+||||+|||.++++++|.++++|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            699999889999999999886 489999999999999999999999999999999999986

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=96.22  E-value=0.00064  Score=50.70  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=22.0

Q ss_pred             ccccccchhhheecccccccccc
Q 020408            2 KFASLYDLVVLLVYEITFFFLFS   24 (326)
Q Consensus         2 eAA~AYD~Aalk~~g~~~~~N~~   24 (326)
                      |||+|||.|+++++|..+.+||+
T Consensus        38 eAA~AyD~Aa~~~~G~~a~~NFp   60 (63)
T 1gcc_A           38 DAALAYDRAAFRMRGSRALLNFP   60 (63)
T ss_dssp             HHHHHHHHHHHHHHSSCCCCSSC
T ss_pred             HHHHHHHHHHHHhcCcccccCCC
Confidence            79999999999999999999995

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=92.59  E-value=0.0061  Score=52.73  Aligned_cols=58  Identities=5%  Similarity=-0.047  Sum_probs=38.4

Q ss_pred             hhhhhhHHHhhhhhccCCCCcceeeEECCCCeEEEEEecCCCCeEEeecCcccHHHHHHHHH
Q 020408           30 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYD   91 (326)
Q Consensus        30 s~~~~~~~~~~r~~~r~~~S~YRGVr~r~~GKW~A~I~~p~~gkri~LGtF~T~EEAArAYD   91 (326)
                      .-++...+.+++.....+ +.++||.....++|.+.|.  .+ +.++||.|.|.+|||++|.
T Consensus        89 ~~~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~--~~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           89 RWVTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIV--IS-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             EEECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEE--EC-TTSCEEEESCHHHHHHHHT
T ss_pred             EECCHHHHhhcccccCcc-cceeeeeeccCCCCceEEE--Ec-CCceEEeeCCHHHHHHHHC
Confidence            344455555544433322 2257774344567999998  56 6778999999999999963

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=88.18  E-value=0.61  Score=36.23  Aligned_cols=29  Identities=17%  Similarity=0.249  Sum_probs=22.2

Q ss_pred             CCCCcceee-EECCCCeEEEEEecCCCCeEEe
Q 020408           46 KRKNQYRGI-RQRPWGKWAAEIRDPTKGVRVW   76 (326)
Q Consensus        46 ~~~S~YRGV-r~r~~GKW~A~I~~p~~gkri~   76 (326)
                      ..+|+|.|| +..+.+.|.|+-.  .+|++..
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~--e~g~rrs   32 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFY--DGASRRS   32 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEE--ETTEEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEe--cCCeEee
Confidence            568999999 4666799999999  4566543

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=83.78  E-value=1.5  Score=39.60  Aligned_cols=42  Identities=14%  Similarity=0.049  Sum_probs=32.7

Q ss_pred             eeeEECCCCeEEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHh
Q 020408           52 RGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRI   97 (326)
Q Consensus        52 RGVr~r~~GKW~A~I~~p~~gkri~LGtF~T~EEAArAYD~AA~~l   97 (326)
                      .||++++.|+|+.+..  .+||++.+|.  |..||..+...+...+
T Consensus        14 ~~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            4788888899998876  7899999996  8888877766554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	326
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	7e-33

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  114 bits (286), Expect = 7e-33
 Identities = 42/61 (68%), Positives = 48/61 (78%), Gaps = 1/61 (1%)

Query: 50  QYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPD 108
            YRG+RQRPWGK+AAEIRDP K G RVWLGTF TAE+AA AYD  A R+RG +A +NFP 
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 109 E 109
            
Sbjct: 62  R 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.88
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	96.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=1.3e-23  Score=157.18  Aligned_cols=60  Identities=68%  Similarity=1.201  Sum_probs=56.5

Q ss_pred             cceeeEECCCCeEEEEEecC-CCCeEEeecCcccHHHHHHHHHHHHHHhcCCCcCCCCCCC
Q 020408           50 QYRGIRQRPWGKWAAEIRDP-TKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDE  109 (326)
Q Consensus        50 ~YRGVr~r~~GKW~A~I~~p-~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~~NFp~~  109 (326)
                      +||||+++++|||+|+|++| .+++++|||+|+|+||||+|||+++++++|.++.+|||.+
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            59999988899999999986 4679999999999999999999999999999999999986

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.91  E-value=5e-05  Score=55.28  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=22.1

Q ss_pred             ccccccchhhheecccccccccc
Q 020408            2 KFASLYDLVVLLVYEITFFFLFS   24 (326)
Q Consensus         2 eAA~AYD~Aalk~~g~~~~~N~~   24 (326)
                      |||||||.|+++++|..+.+||+
T Consensus        38 eAArAYD~aa~~~~G~~a~~NFP   60 (63)
T d1gcca_          38 DAALAYDRAAFRMRGSRALLNFP   60 (63)
T ss_dssp             HHHHHHHHHHHHHHSSCCCCSSC
T ss_pred             HHHHHHHHHHHHhcCCCcccCCC
Confidence            79999999999999999999995