Citrus Sinensis ID: 020431

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEEEEcccccccccccHHHHHHHHHHHHccccccEEEEcccEEEccccccccccccccHHHHHHHHHHHcccEEEEEcccccccccccccccccEEcccccHHHHHHHHHccccccccccHHHHHHccccEEEccccccccccEEEEccccccccccccccccEEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHccccEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEccEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHEEEcccHHHHHHHHHHHHHHccccEEEEcccEEEEEEcccccccEcccHcHHHHHHHHcccccccEEEEEEEEEEcccccEEEccccccHHHHHHHHHHHcccEEEEEEccccEEcccccccccccccccccHHHHHHHHHHcccccccccHHHHHHccccEEEEEccccccccEEEEccccccHHHHHHHcccEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEcHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccc
Coil and Loop (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFlsnvdsghatesfTDFVVGHGELWSAQMLAAVVRKNgidckwmdtrevlivnptssnqvdpdfseSEKRLEKWfsqspsntiiatgfiastpdnipttlkrdgsdFSAAIMGALLRAHQVtiwtdvdgvysadprkVSEAVILRTLSYQEAWEMSYFganvlhprtiipvmrydipIVIRNifnlsvpgimicrppvdenedeqiidspvkgfatiDNLALVNvegtgmagvpgtaNAIFGAVKDVGANVIMISQASsehsvcfavpEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT
Flexible Loop (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLivnptssnqvdpdFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFrealnagrlsqVCLSFWLCDYT
Low Complexity Region (SEG)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFavpekevkavaealeskFREALNAGRLSQVCLSFWLCDYT
Disordered region (IsUnstruct)
***VRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN***************************NTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDY*
Disordered Region (DISOPRED)
MFQ*RNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVD*****QIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT
Disordered Region (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN**************KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT
Disordered Region (DISPRO)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
P37142	921	Bifunctional aspartokinas	N/A	no	0.953	0.337	0.784	1e-144
O81852	916	Bifunctional aspartokinas	yes	no	0.920	0.327	0.793	1e-143
Q9SA18	911	Bifunctional aspartokinas	no	no	0.880	0.315	0.837	1e-143
P49079	920	Bifunctional aspartokinas	N/A	no	0.877	0.310	0.802	1e-137
P49080	917	Bifunctional aspartokinas	N/A	no	0.877	0.311	0.775	1e-132
P27725	819	Bifunctional aspartokinas	N/A	no	0.828	0.329	0.378	6e-50
P00561	820	Bifunctional aspartokinas	N/A	no	0.868	0.345	0.371	3e-48
Q57991	473	Probable aspartokinase OS	yes	no	0.812	0.560	0.392	1e-45
P57290	816	Bifunctional aspartokinas	yes	no	0.855	0.341	0.327	3e-43
P44505	815	Bifunctional aspartokinas	yes	no	0.776	0.310	0.390	7e-42

>sp|P37142|AKH_DAUCA Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1

 Score =  512 bits (1318), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/311 (78%), Positives = 272/311 (87%)

Query: 7   YVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66
           +++ L ++ I       +   +GHATESF+DFVVGHGELWSAQ+L+ V+RKNG DC WMD
Sbjct: 178 FLTRLQHDVITLKAMLRAIYIAGHATESFSDFVVGHGELWSAQLLSFVIRKNGGDCNWMD 237

Query: 67  TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           TR+VL+VNP  SNQVDPD+ ESEKRLEKWFS +   TI+ATGFIASTP NIPTTLKRDGS
Sbjct: 238 TRDVLVVNPAGSNQVDPDYLESEKRLEKWFSSNQCQTIVATGFIASTPQNIPTTLKRDGS 297

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           DFSAAIMGALLRA QVTIWTDV+GVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHP
Sbjct: 298 DFSAAIMGALLRAGQVTIWTDVNGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHP 357

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTI PVMRYDIPIVIRNIFNLS PG MICR  V E ED   ++S VKGFATIDNLAL+NV
Sbjct: 358 RTINPVMRYDIPIVIRNIFNLSAPGTMICRESVGETEDGLKLESHVKGFATIDNLALINV 417

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306
           EGTGMAGVPGTA AIFGAVKDVGANVIMISQASSEHS+CFAVPE EVKAVA+ALE++FR+
Sbjct: 418 EGTGMAGVPGTATAIFGAVKDVGANVIMISQASSEHSICFAVPESEVKAVAKALEARFRQ 477

Query: 307 ALNAGRLSQVC 317
           AL+AGRLSQV 
Sbjct: 478 ALDAGRLSQVA 488

Daucus carota (taxid: 4039)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3

>sp|O81852|AKH2_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1

 Score =  508 bits (1309), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/310 (79%), Positives = 274/310 (88%), Gaps = 10/310 (3%)

Query: 15  FIRSTYNFLSNVDS--------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66
           F+   +N +SN+ +        GHA+ESF+DFV GHGELWSAQML+ VVRK G++CKWMD
Sbjct: 175 FLSHLHNDISNLKAMLRAIYIAGHASESFSDFVAGHGELWSAQMLSYVVRKTGLECKWMD 234

Query: 67  TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           TR+VLIVNPTSSNQVDPDF ESEKRL+KWFS +PS  IIATGFIASTP NIPTTLKRDGS
Sbjct: 235 TRDVLIVNPTSSNQVDPDFGESEKRLDKWFSLNPSKIIIATGFIASTPQNIPTTLKRDGS 294

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           DFSAAIMGALLRA QVTIWTDVDGVYSADPRKV+EAVIL+TLSYQEAWEMSYFGANVLHP
Sbjct: 295 DFSAAIMGALLRARQVTIWTDVDGVYSADPRKVNEAVILQTLSYQEAWEMSYFGANVLHP 354

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTIIPVMRY+IPIVIRNIFNLS PG +IC+PP  E++ +  + +PVKGFATIDNLAL+NV
Sbjct: 355 RTIIPVMRYNIPIVIRNIFNLSAPGTIICQPP--EDDYDLKLTTPVKGFATIDNLALINV 412

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306
           EGTGMAGVPGTA+ IFG VKDVGANVIMISQASSEHSVCFAVPEKEV AV+EAL S+F E
Sbjct: 413 EGTGMAGVPGTASDIFGCVKDVGANVIMISQASSEHSVCFAVPEKEVNAVSEALRSRFSE 472

Query: 307 ALNAGRLSQV 316
           AL AGRLSQ+
Sbjct: 473 ALQAGRLSQI 482

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9SA18|AKH1_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1 SV=1

 Score =  508 bits (1309), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/289 (83%), Positives = 266/289 (92%), Gaps = 2/289 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQMLAAVVRK+G+DC WMD R+VL+V PTSSNQVDPDF E
Sbjct: 191 AGHATESFSDFVVGHGELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTSSNQVDPDFVE 250

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLEKWF+Q+ +  IIATGFIASTP NIPTTLKRDGSDFSAAIM AL R+HQ+TIWTD
Sbjct: 251 SEKRLEKWFTQNSAKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTD 310

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVM+YDIPIVIRNIFNL
Sbjct: 311 VDGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNL 370

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICR    ++ED   +D+PVKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVK+
Sbjct: 371 SAPGTMICRQI--DDEDGFKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKE 428

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQV 316
           VGANVIMISQASSEHSVCFAVPEKEVKAV+EAL S+FR+AL  GRLSQ+
Sbjct: 429 VGANVIMISQASSEHSVCFAVPEKEVKAVSEALNSRFRQALAGGRLSQI 477

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P49079|AKH1_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1

 Score =  488 bits (1257), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/289 (80%), Positives = 261/289 (90%), Gaps = 3/289 (1%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+  ++K+G  C WMDTREVL+VNP+ +NQVDPD+ E
Sbjct: 201 AGHATESFSDFVVGHGELWSAQMLSYAIQKSGTPCSWMDTREVLVVNPSGANQVDPDYLE 260

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLEKWFS+ P+ TIIATGFIASTP+NIPTTLKRDGSDFSAAI+G+L++A QVTIWTD
Sbjct: 261 SEKRLEKWFSRCPAETIIATGFIASTPENIPTTLKRDGSDFSAAIIGSLVKARQVTIWTD 320

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGV+SADPRKVSEAVIL TLSYQEAWEMSYFGANVLHPRTIIPVM+Y+IPIVIRNIFN 
Sbjct: 321 VDGVFSADPRKVSEAVILSTLSYQEAWEMSYFGANVLHPRTIIPVMKYNIPIVIRNIFNT 380

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MIC+ P +EN D   +++ VK FATID LALVNVEGTGMAGVPGTANAIFGAVKD
Sbjct: 381 SAPGTMICQQPANENGD---LEACVKAFATIDKLALVNVEGTGMAGVPGTANAIFGAVKD 437

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQV 316
           VGANVIMISQASSEHSVCFAVPEKEV  V+ AL ++FREAL AGRLS+V
Sbjct: 438 VGANVIMISQASSEHSVCFAVPEKEVALVSAALHARFREALAAGRLSKV 486

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P49080|AKH2_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1

 Score =  472 bits (1215), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/289 (77%), Positives = 253/289 (87%), Gaps = 3/289 (1%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+  ++K+G  C WMDTREVL+V P+  NQVDPD+ E
Sbjct: 198 AGHATESFSDFVVGHGELWSAQMLSYAIKKSGAPCSWMDTREVLVVTPSGCNQVDPDYLE 257

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
            EKRL+KWFS+ P+  I+ATGFIAST  NIPTTLKRDGSDFSAAI+G+L+RA QVTIWTD
Sbjct: 258 CEKRLQKWFSRQPAEIIVATGFIASTAGNIPTTLKRDGSDFSAAIVGSLVRARQVTIWTD 317

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGV+SADPRKVSEAVIL TLSYQEAWEMSYFGANVLHPRTIIPVM+ +IPIVIRN+FNL
Sbjct: 318 VDGVFSADPRKVSEAVILSTLSYQEAWEMSYFGANVLHPRTIIPVMKDNIPIVIRNMFNL 377

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MIC+ P +EN D   +D+ VK FAT+DNLALVNVEGTGMAGVPGTA+AIF AVKD
Sbjct: 378 SAPGTMICKQPANENGD---LDACVKSFATVDNLALVNVEGTGMAGVPGTASAIFSAVKD 434

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQV 316
           VGANVIMISQASSEHSVCFAVPEKEV  V+  L  +FREAL AGRLS+V
Sbjct: 435 VGANVIMISQASSEHSVCFAVPEKEVAVVSAELHDRFREALAAGRLSKV 483

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P27725|AK1H_SERMA Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1

 Score =  198 bits (503), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 159/291 (54%), Gaps = 21/291 (7%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G   +S    ++  GE  S  ++  V R  G          V ++NP         + ES
Sbjct: 112 GQCPDSVNAAIICRGEKLSIAIMEGVFRAKGY--------PVTVINPVEKLLAQGHYLES 163

Query: 89  -----EKRLEKWFSQSPSNTII-ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQV 142
                E  L    +  P++ I+   GF A         L R+GSD+SAA++ A LRA   
Sbjct: 164 TVDIAESTLRIAAAAIPADHIVLMAGFTAGNDKGELVVLGRNGSDYSAAVLAACLRADCC 223

Query: 143 TIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
            IWTDVDGVY+ DPR V +A +L+++SYQEA E+SYFGA VLHPRTI P+ ++ IP +I+
Sbjct: 224 EIWTDVDGVYTCDPRTVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIK 283

Query: 203 NIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIF 262
           N  N   PG +I +   D        D PVKG   ++N+A++NV G GM G+ G A  +F
Sbjct: 284 NTSNPQAPGTLIGKDSTDA-------DMPVKGITNLNNMAMINVSGPGMKGMVGMAARVF 336

Query: 263 GAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
             +   G +V++I+Q+SSE+S+ F VP+ E++    ALE +F   L  G L
Sbjct: 337 AVMSRAGISVVLITQSSSEYSISFCVPQGELQRARRALEEEFYLELKDGVL 387

Serratia marcescens (taxid: 615)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P00561|AK1H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/296 (37%), Positives = 171/296 (57%), Gaps = 13/296 (4%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLI-VNPTSSNQVDPDFSE 87
           G   +S    ++  GE  S  ++A V+   G +   +D  E L+ V     + VD   +E
Sbjct: 112 GQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVD--IAE 169

Query: 88  SEKRLEKWFSQSPSN-TIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           S +R+    S+ P++  ++  GF A         L R+GSD+SAA++ A LRA    IWT
Sbjct: 170 STRRIAA--SRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWT 227

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DVDGVY+ DPR+V +A +L+++SYQEA E+SYFGA VLHPRTI P+ ++ IP +I+N  N
Sbjct: 228 DVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGN 287

Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
              PG +I       +EDE     PVKG + ++N+A+ +V G GM G+ G A  +F A+ 
Sbjct: 288 PQAPGTLI---GASRDEDEL----PVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMS 340

Query: 267 DVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWL 322
               +V++I+Q+SSE+S+ F VP+ +      A++ +F   L  G L  + ++  L
Sbjct: 341 RARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERL 396

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q57991|AK_METJA Probable aspartokinase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0571 PE=1 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 154/278 (55%), Gaps = 13/278 (4%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 115 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 174

Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 175 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290

Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 291 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 343

Query: 267 DVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304
           +   NVI+ISQ SSE ++   V E++V    +AL+ +F
Sbjct: 344 EEEVNVILISQGSSETNISLVVSEEDVDKALKALKREF 381

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 4

>sp|P57290|AKH_BUCAI Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=thrA PE=3 SV=1

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 29/308 (9%)

Query: 20  YNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN 74
           +N L N+  G        ++    ++  GE+ S  ++ ++++    +        V I+N
Sbjct: 98  FNELKNIIQGILLLKQCPDNIRAIIISRGEILSVFIMKSILQSKNYN--------VTIIN 149

Query: 75  PTSS------NQVDP--DFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           P  +      N +D   D SES+K ++   + + SN I+  GFIA   D     L R+GS
Sbjct: 150 PVKNLVAIGDNYLDSTVDISESKKNIQNM-NINQSNIILMAGFIAGNKDKKLVVLGRNGS 208

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D+SAA++ A L A+   IWTDVDGV+++DPRKV  A +L+++SYQEA E+SYFGA VLHP
Sbjct: 209 DYSAAVLAACLDANCCEIWTDVDGVFTSDPRKVPNARLLKSISYQEAMELSYFGAKVLHP 268

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTI P+ ++ IP +I+N  N+   G +IC     E +        +KG   +D +A+ N+
Sbjct: 269 RTIEPIAQFKIPCLIKNTNNVKSIGTLICEQNCSEKD-------FLKGVTHLDEIAMFNI 321

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306
            G  +  V    + IF  +      +++I+Q+SSE+ + F V E ++  +      +F+ 
Sbjct: 322 SGPHIKDVGSVISRIFTMMSRGNIKILLITQSSSENKINFCVYEHDIYKILYLFNKEFQL 381

Query: 307 ALNAGRLS 314
            L  G L+
Sbjct: 382 ELKDGLLN 389

Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P44505|AKH_HAEIN Bifunctional aspartokinase/homoserine dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=thrA PE=3 SV=1

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/279 (39%), Positives = 152/279 (54%), Gaps = 26/279 (9%)

Query: 57  KNGIDCK-----------WMDTR--EVLIVNPTSSNQVDPDFSESEKRLEKWFSQ----- 98
           K  IDC+           W + R   V IV+P         + ES   +E+   +     
Sbjct: 119 KATIDCRGEKLSIAMMKAWFEARGYSVHIVDPVKQLLAKGGYLESSVEIEESTKRVDAAN 178

Query: 99  -SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR 157
            +    ++  GF A         L R+GSD+SAA + A L A    IWTDVDGVY+ DPR
Sbjct: 179 IAKDKVVLMAGFTAGNEKGELVLLGRNGSDYSAACLAACLGASVCEIWTDVDGVYTCDPR 238

Query: 158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP 217
            V +A +L TLSY+EA E+SYFGA V+HPRTI P++  +IP VI+N  N S PG +I   
Sbjct: 239 LVPDARLLPTLSYREAMELSYFGAKVIHPRTIGPLLPQNIPCVIKNTGNPSAPGSII--- 295

Query: 218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
             D N   + +   VKG   +DNLA+ NV G GM G+ G A+ +F A+   G +VI+I+Q
Sbjct: 296 --DGNVKSESLQ--VKGITNLDNLAMFNVSGPGMQGMVGMASRVFSAMSGAGISVILITQ 351

Query: 278 ASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQV 316
           +SSE+S+ F VP K  +     LE++F   LN  +L  +
Sbjct: 352 SSSEYSISFCVPVKSAEVAKTVLETEFANELNEHQLEPI 390

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
255569084	920	aspartate kinase, putative [Ricinus comm	0.892	0.316	0.876	1e-150
224145045	829	predicted protein [Populus trichocarpa]	0.886	0.348	0.869	1e-149
224136137	843	predicted protein [Populus trichocarpa]	0.886	0.342	0.862	1e-147
147856217	841	hypothetical protein VITISV_034964 [Viti	0.917	0.355	0.819	1e-146
297740938	871	unnamed protein product [Vitis vinifera]	0.917	0.343	0.819	1e-146
225460063	918	PREDICTED: bifunctional aspartokinase/ho	0.917	0.325	0.819	1e-146
351721667	916	aspartokinase-homoserine dehydrogenase [	0.892	0.317	0.845	1e-145
357518663	909	Bifunctional aspartokinase/homoserine de	0.892	0.320	0.845	1e-144
357518661	917	Bifunctional aspartokinase/homoserine de	0.898	0.319	0.839	1e-144
449481510	918	PREDICTED: bifunctional aspartokinase/ho	0.886	0.314	0.852	1e-144

>gi|255569084|ref|XP_002525511.1| aspartate kinase, putative [Ricinus communis] gi|223535190|gb|EEF36869.1| aspartate kinase, putative [Ricinus communis]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 255/291 (87%), Positives = 273/291 (93%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESFTDFVVGHGELWSAQML+ VVRK+G DCKWMDTREVLIVNPTSSNQVDPDF E
Sbjct: 198 AGHATESFTDFVVGHGELWSAQMLSYVVRKSGQDCKWMDTREVLIVNPTSSNQVDPDFVE 257

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WF++ P  TI+ATGFIASTP NIPTTLKRDGSDFSAAIMGALLRA QVTIWTD
Sbjct: 258 SEKRLEEWFAKHPCKTIVATGFIASTPQNIPTTLKRDGSDFSAAIMGALLRARQVTIWTD 317

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPI+IRNIFNL
Sbjct: 318 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIMIRNIFNL 377

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           + PG MICR   DENED Q ++S VKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 378 ASPGTMICRTSTDENEDCQKLESFVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 437

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCL 318
           VGANVIMISQASSEHSVCFAVPEKEV AVAEAL+S+FR+AL+AGRLSQV +
Sbjct: 438 VGANVIMISQASSEHSVCFAVPEKEVNAVAEALQSRFRQALHAGRLSQVAI 488

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145045|ref|XP_002325506.1| predicted protein [Populus trichocarpa] gi|222862381|gb|EEE99887.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/291 (86%), Positives = 274/291 (94%), Gaps = 2/291 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELW+AQML+ VVRKNG+DC+WMDTREVLIVNP+ SNQVDPDF E
Sbjct: 109 AGHATESFSDFVVGHGELWTAQMLSYVVRKNGLDCEWMDTREVLIVNPSGSNQVDPDFVE 168

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WFS+ PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIMGA++RA QVTIWTD
Sbjct: 169 SEKRLEEWFSRHPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIMGAMVRARQVTIWTD 228

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI+PVMRYDIPI+IRNIFNL
Sbjct: 229 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTILPVMRYDIPIMIRNIFNL 288

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICRP   ENED Q ++SPVKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 289 SAPGTMICRPA--ENEDGQKLESPVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 346

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCL 318
           VGANVIMISQASSEHSVCFAVPEKEV AVAEAL+S+F EALNAGRLSQV +
Sbjct: 347 VGANVIMISQASSEHSVCFAVPEKEVTAVAEALKSRFHEALNAGRLSQVAV 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136137|ref|XP_002327390.1| predicted protein [Populus trichocarpa] gi|222835760|gb|EEE74195.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/291 (86%), Positives = 273/291 (93%), Gaps = 2/291 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+ VVRKNG+DC+WMDTREVLIVNP+ SNQVDPDF+E
Sbjct: 123 AGHATESFSDFVVGHGELWSAQMLSYVVRKNGLDCEWMDTREVLIVNPSGSNQVDPDFAE 182

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WFS+ PS TI+ATGFIAST  NIPTTLKRDGSDFSAAIMGAL+RA QVTIWTD
Sbjct: 183 SEKRLEEWFSRHPSKTIVATGFIASTQQNIPTTLKRDGSDFSAAIMGALVRARQVTIWTD 242

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI+PVMRYDIPI+IRN+FNL
Sbjct: 243 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIMPVMRYDIPILIRNVFNL 302

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICRP   ENED Q ++S VKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 303 SAPGTMICRPA--ENEDGQKLESLVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 360

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCL 318
           VGANVI+ISQASSEHSVCFAVPEKEV AVAEAL+S+F EALNAGRLSQV +
Sbjct: 361 VGANVIVISQASSEHSVCFAVPEKEVAAVAEALKSRFHEALNAGRLSQVAV 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856217|emb|CAN82421.1| hypothetical protein VITISV_034964 [Vitis vinifera]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/305 (81%), Positives = 275/305 (90%), Gaps = 6/305 (1%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 111 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 164

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 165 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 224

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 225 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 284

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 285 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 344

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           VPGTA+AIF AVKDVGANVIMISQASSEHSVCFAVPEKEV+AVAEAL+S+FR+AL+AGRL
Sbjct: 345 VPGTASAIFSAVKDVGANVIMISQASSEHSVCFAVPEKEVEAVAEALQSRFRQALDAGRL 404

Query: 314 SQVCL 318
           SQV +
Sbjct: 405 SQVAV 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740938|emb|CBI31250.3| unnamed protein product [Vitis vinifera]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/305 (81%), Positives = 275/305 (90%), Gaps = 6/305 (1%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 141 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 194

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 195 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 254

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 255 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 314

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 315 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 374

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           VPGTA+AIF AVKDVGANVIMISQASSEHSVCFAVPEKEV+AVAEAL+S+FR+AL+AGRL
Sbjct: 375 VPGTASAIFSAVKDVGANVIMISQASSEHSVCFAVPEKEVEAVAEALQSRFRQALDAGRL 434

Query: 314 SQVCL 318
           SQV +
Sbjct: 435 SQVAV 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460063|ref|XP_002271525.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic-like [Vitis vinifera]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/305 (81%), Positives = 275/305 (90%), Gaps = 6/305 (1%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 188 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 241

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 242 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 301

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 302 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 361

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 362 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 421

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           VPGTA+AIF AVKDVGANVIMISQASSEHSVCFAVPEKEV+AVAEAL+S+FR+AL+AGRL
Sbjct: 422 VPGTASAIFSAVKDVGANVIMISQASSEHSVCFAVPEKEVEAVAEALQSRFRQALDAGRL 481

Query: 314 SQVCL 318
           SQV +
Sbjct: 482 SQVAV 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721667|ref|NP_001237473.1| aspartokinase-homoserine dehydrogenase [Glycine max] gi|2970447|gb|AAC05981.1| aspartokinase-homoserine dehydrogenase [Glycine max]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/291 (84%), Positives = 268/291 (92%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESFTDFVVGHGELWSAQML+ V+RKNG DCKWMDTR+VLIVNPT SNQVDPD+ E
Sbjct: 194 AGHATESFTDFVVGHGELWSAQMLSLVIRKNGTDCKWMDTRDVLIVNPTGSNQVDPDYLE 253

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SE+RLEKW+S +P   IIATGFIASTP NIPTTLKRDGSDFSAAIMGAL +A QVTIWTD
Sbjct: 254 SEQRLEKWYSLNPCKVIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALFKARQVTIWTD 313

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY IPI+IRNIFNL
Sbjct: 314 VDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPIMIRNIFNL 373

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG  IC P V+++ED Q + + VKGFATIDNLALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 374 SAPGTKICHPSVNDHEDSQNLQNFVKGFATIDNLALVNVEGTGMAGVPGTASAIFGAVKD 433

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCL 318
           VGANVIMISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL+ GRLSQV +
Sbjct: 434 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGRLSQVAV 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518663|ref|XP_003629620.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] gi|355523642|gb|AET04096.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/291 (84%), Positives = 267/291 (91%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GH TESFTDFVVGHGELWSAQML+ V+RKNGIDCKWMDTREVLIVNPTSSNQVDPD+ E
Sbjct: 187 AGHVTESFTDFVVGHGELWSAQMLSLVIRKNGIDCKWMDTREVLIVNPTSSNQVDPDYLE 246

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SE+RLEKW+S +P   IIATGFIASTP+NIPTTLKRDGSDFSAAIMG+L RA QVTIWTD
Sbjct: 247 SERRLEKWYSLNPCKVIIATGFIASTPENIPTTLKRDGSDFSAAIMGSLFRARQVTIWTD 306

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY IPI+IRNIFNL
Sbjct: 307 VDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPILIRNIFNL 366

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG  IC P V + ED+  + + VKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVKD
Sbjct: 367 SAPGTKICHPVVSDYEDKSNLQNYVKGFATIDNLALVNVEGTGMAGVPGTASAIFAAVKD 426

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCL 318
           VGANVIMISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL+ GRLSQV +
Sbjct: 427 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGRLSQVAV 477

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518661|ref|XP_003629619.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] gi|355523641|gb|AET04095.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/293 (83%), Positives = 267/293 (91%)

Query: 26  VDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF 85
           +  GH TESFTDFVVGHGELWSAQML+ V+RKNGIDCKWMDTREVLIVNPTSSNQVDPD+
Sbjct: 193 IGPGHVTESFTDFVVGHGELWSAQMLSLVIRKNGIDCKWMDTREVLIVNPTSSNQVDPDY 252

Query: 86  SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW 145
            ESE+RLEKW+S +P   IIATGFIASTP+NIPTTLKRDGSDFSAAIMG+L RA QVTIW
Sbjct: 253 LESERRLEKWYSLNPCKVIIATGFIASTPENIPTTLKRDGSDFSAAIMGSLFRARQVTIW 312

Query: 146 TDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205
           TDVDGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY IPI+IRNIF
Sbjct: 313 TDVDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPILIRNIF 372

Query: 206 NLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV 265
           NLS PG  IC P V + ED+  + + VKGFATIDNLALVNVEGTGMAGVPGTA+AIF AV
Sbjct: 373 NLSAPGTKICHPVVSDYEDKSNLQNYVKGFATIDNLALVNVEGTGMAGVPGTASAIFAAV 432

Query: 266 KDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCL 318
           KDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL+ GRLSQV +
Sbjct: 433 KDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGRLSQVAV 485

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449481510|ref|XP_004156204.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic-like [Cucumis sativus]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/291 (85%), Positives = 270/291 (92%), Gaps = 2/291 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHA ESFTDFVVGHGELWSA ML+AV+RK G+DCKWMDTREVLIVNPTSSNQVDPDF E
Sbjct: 198 AGHAMESFTDFVVGHGELWSASMLSAVIRKRGLDCKWMDTREVLIVNPTSSNQVDPDFLE 257

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SE+RLE+W+S++ S  IIATGFIAST +NIPTTLKRDGSDFSAAIMGALL + QVTIWTD
Sbjct: 258 SERRLEQWYSKNSSKIIIATGFIASTHENIPTTLKRDGSDFSAAIMGALLTSRQVTIWTD 317

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKV EAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPI+IRNIFNL
Sbjct: 318 VDGVYSADPRKVKEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIIIRNIFNL 377

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICR PVDE E E ++ S VKGFATIDN+ALVNVEGTGMAGVPGTANAIFGAVKD
Sbjct: 378 SAPGTMICRQPVDE-ESESLV-SFVKGFATIDNVALVNVEGTGMAGVPGTANAIFGAVKD 435

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCL 318
           VGANV+MISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL AGRLSQV +
Sbjct: 436 VGANVVMISQASSEHSVCFAVPEKEVKAVAEALKSRFRQALEAGRLSQVAV 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2133995	916	AK-HSDH II "aspartate kinase-h	0.880	0.313	0.792	3.2e-120
TAIR|locus:2029564	911	AK-HSDH I "aspartate kinase-ho	0.880	0.315	0.792	1.4e-119
UNIPROTKB|P00561	820	thrA "ThrA" [Escherichia coli	0.828	0.329	0.370	7.4e-42
UNIPROTKB|Q9KPK3	825	VC_2364 "Aspartokinase I/homos	0.822	0.324	0.379	9.8e-42
TIGR_CMR|VC_2364	825	VC_2364 "aspartokinase I/homos	0.822	0.324	0.379	9.8e-42
TIGR_CMR|CPS_4291	825	CPS_4291 "aspartokinase/homose	0.825	0.326	0.374	2.5e-40
TIGR_CMR|SO_3415	822	SO_3415 "aspartokinase I/homos	0.733	0.290	0.379	7.3e-37
UNIPROTKB|Q9KUW8	479	VC_0391 "Aspartokinase" [Vibri	0.530	0.361	0.365	2.6e-31
TIGR_CMR|VC_0391	479	VC_0391 "aspartokinase III, ly	0.530	0.361	0.365	2.6e-31
UNIPROTKB|P08660	449	lysC "LysC" [Escherichia coli	0.723	0.525	0.32	1.3e-29

TAIR|locus:2133995 AK-HSDH II "aspartate kinase-homoserine dehydrogenase ii" [Arabidopsis thaliana (taxid:3702)]

 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 229/289 (79%), Positives = 251/289 (86%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             +GHA+ESF+DFV GHGELWSAQML+ VVRK G++CKWMDTR+VLIVNPTSSNQVDPDF E
Sbjct:   196 AGHASESFSDFVAGHGELWSAQMLSYVVRKTGLECKWMDTRDVLIVNPTSSNQVDPDFGE 255

Query:    88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
             SEKRL+KWFS +PS  IIATGFIASTP NIPTTLKRDGSDFSAAIMGALLRA QVTIWTD
Sbjct:   256 SEKRLDKWFSLNPSKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALLRARQVTIWTD 315

Query:   148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
             VDGVYSADPRKV+EAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY+IPIVIRNIFNL
Sbjct:   316 VDGVYSADPRKVNEAVILQTLSYQEAWEMSYFGANVLHPRTIIPVMRYNIPIVIRNIFNL 375

Query:   208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
             S PG +IC+PP D+ + +  + +PVKGFATIDNLAL+NVEGTGMAGVPGTA+ IFG VKD
Sbjct:   376 SAPGTIICQPPEDDYDLK--LTTPVKGFATIDNLALINVEGTGMAGVPGTASDIFGCVKD 433

Query:   268 VGANVIMISQASSEHSVCFXXXXXXXXXXXXXXXXXFREALNAGRLSQV 316
             VGANVIMISQASSEHSVCF                 F EAL AGRLSQ+
Sbjct:   434 VGANVIMISQASSEHSVCFAVPEKEVNAVSEALRSRFSEALQAGRLSQI 482

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2029564 AK-HSDH I "aspartate kinase-homoserine dehydrogenase i" [Arabidopsis thaliana (taxid:3702)]

 Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
 Identities = 229/289 (79%), Positives = 251/289 (86%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             +GHATESF+DFVVGHGELWSAQMLAAVVRK+G+DC WMD R+VL+V PTSSNQVDPDF E
Sbjct:   191 AGHATESFSDFVVGHGELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTSSNQVDPDFVE 250

Query:    88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
             SEKRLEKWF+Q+ +  IIATGFIASTP NIPTTLKRDGSDFSAAIM AL R+HQ+TIWTD
Sbjct:   251 SEKRLEKWFTQNSAKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTD 310

Query:   148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
             VDGVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVM+YDIPIVIRNIFNL
Sbjct:   311 VDGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNL 370

Query:   208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
             S PG MICR  +D+ ED   +D+PVKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVK+
Sbjct:   371 SAPGTMICRQ-IDD-EDGFKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKE 428

Query:   268 VGANVIMISQASSEHSVCFXXXXXXXXXXXXXXXXXFREALNAGRLSQV 316
             VGANVIMISQASSEHSVCF                 FR+AL  GRLSQ+
Sbjct:   429 VGANVIMISQASSEHSVCFAVPEKEVKAVSEALNSRFRQALAGGRLSQI 477

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|P00561 thrA "ThrA" [Escherichia coli K-12 (taxid:83333)]

 Score = 451 (163.8 bits), Expect = 7.4e-42, P = 7.4e-42
 Identities = 106/286 (37%), Positives = 168/286 (58%)

Query:     3 QVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDC 62
             Q++ +V +  +  I+   + +S +  G   +S    ++  GE  S  ++A V+   G + 
Sbjct:    89 QLKTFVDQ-EFAQIKHVLHGISLL--GQCPDSINAALICRGEKMSIAIMAGVLEARGHNV 145

Query:    63 KWMDTREVLI-VNPTSSNQVDPDFSESEKRLEKWFSQSPSN-TIIATGFIASTPDNIPTT 120
               +D  E L+ V     + VD   +ES +R+    S+ P++  ++  GF A         
Sbjct:   146 TVIDPVEKLLAVGHYLESTVD--IAESTRRIAA--SRIPADHMVLMAGFTAGNEKGELVV 201

Query:   121 LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG 180
             L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR+V +A +L+++SYQEA E+SYFG
Sbjct:   202 LGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFG 261

Query:   181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDN 240
             A VLHPRTI P+ ++ IP +I+N  N   PG +I       +EDE     PVKG + ++N
Sbjct:   262 AKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLI---GASRDEDEL----PVKGISNLNN 314

Query:   241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
             +A+ +V G GM G+ G A  +F A+     +V++I+Q+SSE+S+ F
Sbjct:   315 MAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360

GO:0050661 "NADP binding" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009088 "threonine biosynthetic process" evidence=IEA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;IDA

GO:0009090 "homoserine biosynthetic process" evidence=IDA

UNIPROTKB|Q9KPK3 VC_2364 "Aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 450 (163.5 bits), Expect = 9.8e-42, P = 9.8e-42
 Identities = 106/279 (37%), Positives = 151/279 (54%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-QVDPDFSESEKRLEKWFS 97
             ++  GE  S Q++ AV+   G+    +D  + L+         VD + S    R +    
Sbjct:   128 IISKGERVSIQLMKAVMEAKGLPANLVDPVKYLLAKGDHLEAMVDVEISTQRFR-QAPLP 186

Query:    98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR 157
             Q   N  I  GF A         L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR
Sbjct:   187 QQHVN--IMPGFTAGNAQGELVCLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYNCDPR 244

Query:   158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP 217
              V +A +L++LSYQEA E+SYFGA+VLHP+TI P+ ++ IP +I+N FN    G +I + 
Sbjct:   245 LVDDARLLKSLSYQEAMELSYFGASVLHPKTIAPIAQFQIPCLIKNSFNPQGAGTLIGQ- 303

Query:   218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
               D  ED+  I    KG  T+ NL +VNV G GM G+ G A+ +FGA+     ++++I+Q
Sbjct:   304 --DTGEDKLAI----KGITTLSNLTMVNVSGPGMKGMVGMASRVFGAMSAADVSIVLITQ 357

Query:   278 ASSEHSVCFXXXXXXXXXXXXXXXXXFREALNAGRLSQV 316
             +SSE+S+ F                 F   L  G L  V
Sbjct:   358 SSSEYSISFCIEAQHKALAQQALADAFELELKDGLLEPV 396

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|VC_2364 VC_2364 "aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 450 (163.5 bits), Expect = 9.8e-42, P = 9.8e-42
 Identities = 106/279 (37%), Positives = 151/279 (54%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-QVDPDFSESEKRLEKWFS 97
             ++  GE  S Q++ AV+   G+    +D  + L+         VD + S    R +    
Sbjct:   128 IISKGERVSIQLMKAVMEAKGLPANLVDPVKYLLAKGDHLEAMVDVEISTQRFR-QAPLP 186

Query:    98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR 157
             Q   N  I  GF A         L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR
Sbjct:   187 QQHVN--IMPGFTAGNAQGELVCLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYNCDPR 244

Query:   158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP 217
              V +A +L++LSYQEA E+SYFGA+VLHP+TI P+ ++ IP +I+N FN    G +I + 
Sbjct:   245 LVDDARLLKSLSYQEAMELSYFGASVLHPKTIAPIAQFQIPCLIKNSFNPQGAGTLIGQ- 303

Query:   218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
               D  ED+  I    KG  T+ NL +VNV G GM G+ G A+ +FGA+     ++++I+Q
Sbjct:   304 --DTGEDKLAI----KGITTLSNLTMVNVSGPGMKGMVGMASRVFGAMSAADVSIVLITQ 357

Query:   278 ASSEHSVCFXXXXXXXXXXXXXXXXXFREALNAGRLSQV 316
             +SSE+S+ F                 F   L  G L  V
Sbjct:   358 SSSEYSISFCIEAQHKALAQQALADAFELELKDGLLEPV 396

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|CPS_4291 CPS_4291 "aspartokinase/homoserine dehydrogenase, threonine-sensitive" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 437 (158.9 bits), Expect = 2.5e-40, P = 2.5e-40
 Identities = 107/286 (37%), Positives = 157/286 (54%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
             ++  GE  S  +L AV++   +    +   + L  N +S N V  D   S+++ E  +++
Sbjct:   122 IISTGERLSVAILDAVLQAYSVQVSLLAPEKFLYTNKSSLNAV-ADLVLSKEKFEHEYTE 180

Query:    99 SPSNTIIATGFIASTPDN---IP--TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
               +   +  GFI    DN    P  TTL R+GSD+SAA++     A    IWTDVDGVY+
Sbjct:   181 L-NQVSLMPGFIGVNADNNDGTPEVTTLGRNGSDYSAAVLAVCAVAECCEIWTDVDGVYN 239

Query:   154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
             ADPR + EA +L  LSYQEA E+SYFGA+VLHP+TI P+ +Y IP +I+N  N S PG +
Sbjct:   240 ADPRYIKEAKLLDYLSYQEAMELSYFGASVLHPKTIGPIAQYHIPCLIKNTSNPSAPGTL 299

Query:   214 ICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVI 273
             I       NE++Q     VK  + +D+L +VNV G GM G+ G A+ +F  +     +++
Sbjct:   300 I------SNENDQ--QKRVKAISNLDDLTMVNVSGPGMKGMVGMASRVFATMSRENISLV 351

Query:   274 MISQASSEHSVCFXXXXXXXXXXXXXXXXXFR-EALNAGRLSQVCL 318
             +ISQ+SSE+ + F                 F  E LN G L  + L
Sbjct:   352 LISQSSSEYCISFCIYSSDSARAKQSLHEEFELELLN-GLLEPLAL 396

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|SO_3415 SO_3415 "aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 405 (147.6 bits), Expect = 7.3e-37, P = 7.3e-37
 Identities = 94/248 (37%), Positives = 136/248 (54%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
             +V  GE  SA ++  V+   GI    +D R++ +        V  D + S+ R +     
Sbjct:   123 IVVAGERLSAALMEQVMLAKGITSAQLDPRKLFLGRGRPLESV-VDIAVSKPRFKNLLLD 181

Query:    99 SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
                   +  GF A+  D    TL R+GSD+SAA++ A L A    IWTDVDGVY+ DPR 
Sbjct:   182 E-KRVWVMPGFTAADEDGKVVTLGRNGSDYSAAVLAACLDASSCEIWTDVDGVYNTDPRV 240

Query:   159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP 218
             V++A +L  LSYQEA E+SYFGA VLHP+TI P+ ++ IP  I+N FN   PG +     
Sbjct:   241 VADAKLLSQLSYQEAMELSYFGAKVLHPKTIAPIAQFHIPCYIKNSFNPDAPGTL----- 295

Query:   219 VDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278
             V    D   +   VK  + +DN  + +V G GM G+ G A+    A+   G +V +I+Q+
Sbjct:   296 VSNLADASGLQ--VKAISNLDNQTMFDVSGPGMKGMVGMASRTLAAISRSGVSVSLITQS 353

Query:   279 SSEHSVCF 286
             S E+S+ F
Sbjct:   354 SCEYSISF 361

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|Q9KUW8 VC_0391 "Aspartokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 299 (110.3 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
 Identities = 64/175 (36%), Positives = 99/175 (56%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             S  +++  TD +V  GEL S  +L  ++R+ G+D    D REVL  +     + +P   E
Sbjct:   132 SFQSSKKLTDHLVACGELISTYILTQLMRERGVDAVRFDIREVLRTDD-HYGRAEPQLKE 190

Query:    88 -SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
              ++   EK         ++  GFI S      TTL R GSD+SAA++   ++A  + IWT
Sbjct:   191 IAQLAKEKLVPLCEQYVVVTQGFIGSDAQGNTTTLGRGGSDYSAALIAEAVQASGLEIWT 250

Query:   147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
             DV G+YS DPR   +A  +  +S+ EA EM+ FGA +LHP T++P +R+ IP+ +
Sbjct:   251 DVPGIYSTDPRIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFV 305

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|VC_0391 VC_0391 "aspartokinase III, lysine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 299 (110.3 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
 Identities = 64/175 (36%), Positives = 99/175 (56%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             S  +++  TD +V  GEL S  +L  ++R+ G+D    D REVL  +     + +P   E
Sbjct:   132 SFQSSKKLTDHLVACGELISTYILTQLMRERGVDAVRFDIREVLRTDD-HYGRAEPQLKE 190

Query:    88 -SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
              ++   EK         ++  GFI S      TTL R GSD+SAA++   ++A  + IWT
Sbjct:   191 IAQLAKEKLVPLCEQYVVVTQGFIGSDAQGNTTTLGRGGSDYSAALIAEAVQASGLEIWT 250

Query:   147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
             DV G+YS DPR   +A  +  +S+ EA EM+ FGA +LHP T++P +R+ IP+ +
Sbjct:   251 DVPGIYSTDPRIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFV 305

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|P08660 lysC "LysC" [Escherichia coli K-12 (taxid:83333)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 80/250 (32%), Positives = 130/250 (52%)

Query:    34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE-SEKRL 92
             + TD +V HGEL S  +   ++R+  +  +W D R+V+  N     + +PD +  +E   
Sbjct:   109 ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFG-RAEPDIAALAELAA 167

Query:    93 EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
              +   +     +I  GFI S      TTL R GSD++AA++   L A +V IWTDV G+Y
Sbjct:   168 LQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227

Query:   153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
             + DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G 
Sbjct:   228 TTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGT 287

Query:   213 MICRPPVDENEDEQIIDSPV-KGFATIDNLALVNVEGTGMAGVPGTANAIFG--AVKDVG 269
             ++C      N+ E   + P+ +  A   N  L+ +    M    G    +FG  A  ++ 
Sbjct:   288 LVC------NKTE---NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNIS 338

Query:   270 ANVIMISQAS 279
              ++I  S+ S
Sbjct:   339 VDLITTSEVS 348

GO:0016597 "amino acid binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;IDA

GO:0009090 "homoserine biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81852	AKH2_ARATH	1, ., 1, ., 1, ., 3	0.7935	0.9202	0.3275	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.2	LOW CONFIDENCE prediction!
4th Layer	2.7.2.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
PRK09436	819	PRK09436, thrA, bifunctional aspartokinase I/homos	1e-105
cd04257	294	cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kina	1e-97
COG0527	447	COG0527, LysC, Aspartokinases [Amino acid transpor	4e-92
cd04243	293	cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino	1e-91
PRK06291	465	PRK06291, PRK06291, aspartate kinase; Provisional	2e-79
cd04234	227	cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa	2e-76
TIGR00657	441	TIGR00657, asp_kinases, aspartate kinase	6e-75
TIGR00656	401	TIGR00656, asp_kin_monofn, aspartate kinase, monof	3e-64
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	8e-52
cd04244	298	cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino	2e-50
cd04258	292	cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami	3e-50
PRK08961	861	PRK08961, PRK08961, bifunctional aspartate kinase/	7e-46
PRK09466	810	PRK09466, metL, bifunctional aspartate kinase II/h	3e-45
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	2e-42
cd04259	295	cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Ki	2e-39
cd04245	288	cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Ami	7e-37
PRK09034	454	PRK09034, PRK09034, aspartate kinase; Reviewed	2e-34
cd04246	239	cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino	2e-34
cd02115	248	cd02115, AAK, Amino Acid Kinases (AAK) superfamily	2e-32
PLN02551	521	PLN02551, PLN02551, aspartokinase	2e-32
PRK08210	403	PRK08210, PRK08210, aspartate kinase I; Reviewed	5e-32
cd04260	244	cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A	4e-31
cd04261	239	cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino	2e-30
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	2e-29
cd04921	80	cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of	4e-29
pfam00696	230	pfam00696, AA_kinase, Amino acid kinase family	2e-28
PRK05925	440	PRK05925, PRK05925, aspartate kinase; Provisional	1e-27
PRK08373	341	PRK08373, PRK08373, aspartate kinase; Validated	2e-27
cd04247	306	cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kina	9e-27
TIGR02078	327	TIGR02078, AspKin_pair, Pyrococcus aspartate kinas	1e-20
cd04892	65	cd04892, ACT_AK-like_2, ACT domains C-terminal to	3e-19
PRK08841	392	PRK08841, PRK08841, aspartate kinase; Validated	3e-18
PRK06291	465	PRK06291, PRK06291, aspartate kinase; Provisional	2e-16
cd04868	60	cd04868, ACT_AK-like, ACT domains C-terminal to th	2e-15
cd04924	66	cd04924, ACT_AK-Arch_2, ACT domains of a monofunct	1e-13
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	2e-12
cd04239	229	cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase	3e-10
PRK09034	454	PRK09034, PRK09034, aspartate kinase; Reviewed	4e-09
cd04916	66	cd04916, ACT_AKiii-YclM-BS_2, ACT domains located	1e-08
cd04917	64	cd04917, ACT_AKiii-LysC-EC_2, ACT domains located	1e-08
cd04922	66	cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the b	3e-08
PRK00358	231	PRK00358, pyrH, uridylate kinase; Provisional	3e-08
COG0528	238	COG0528, PyrH, Uridylate kinase [Nucleotide transp	3e-08
TIGR02075	232	TIGR02075, pyrH_bact, uridylate kinase	1e-07
cd04254	231	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t	3e-07
cd04248	304	cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Aci	7e-06
PRK14558	231	PRK14558, pyrH, uridylate kinase; Provisional	9e-06
pfam01842	66	pfam01842, ACT, ACT domain	1e-05
cd04923	63	cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of t	1e-05
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	2e-05
TIGR02076	221	TIGR02076, pyrH_arch, uridylate kinase, putative	2e-05
cd04936	63	cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of t	2e-05
cd04253	221	cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k	2e-05
PRK09181	475	PRK09181, PRK09181, aspartate kinase; Validated	3e-05
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	2e-04
cd04913	75	cd04913, ACT_AKii-LysC-BS-like_1, ACT domains of t	2e-04
pfam13840	65	pfam13840, ACT_7, Family description	3e-04
cd04242	251	cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-k	6e-04
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	0.001
PRK05429	372	PRK05429, PRK05429, gamma-glutamyl kinase; Provisi	0.001
COG0263	369	COG0263, ProB, Glutamate 5-kinase [Amino acid tran	0.001
TIGR01027	363	TIGR01027, proB, glutamate 5-kinase	0.001
cd04255	262	cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD i	0.003
cd04891	61	cd04891, ACT_AK-LysC-DapG-like_1, ACT domains of t	0.004

>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

 Score =  324 bits (833), Expect = e-105
 Identities = 113/280 (40%), Positives = 166/280 (59%), Gaps = 9/280 (3%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
             ++  GE  S  ++AAV+   G D   +D RE+L+ +     +   D +ES +R+   F
Sbjct: 120 AAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLAD-GHYLESTVDIAESTRRIAASF 178

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
             +  + I+  GF A        TL R+GSD+SAAI+ A L A    IWTDVDGVY+ADP
Sbjct: 179 IPAD-HVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADP 237

Query: 157 RKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR 216
           R V +A +L++LSYQEA E+SYFGA VLHPRTI P+ ++ IP +I+N FN   PG +I  
Sbjct: 238 RVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGA 297

Query: 217 PPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276
              ++         PVKG + ++N+A+ NV G GM G+ G A+ +F A+   G +V++I+
Sbjct: 298 ESDED-------SLPVKGISNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLIT 350

Query: 277 QASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQV 316
           Q+SSE+S+ F VP+ +      ALE +F   L  G L  +
Sbjct: 351 QSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPL 390

Length = 819

>gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

 Score =  289 bits (743), Expect = 1e-97
 Identities = 97/187 (51%), Positives = 126/187 (67%), Gaps = 2/187 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G   +S    V+  GE  SA++L+A++ + G+D  W+D RE LIV          D   S
Sbjct: 110 GELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARE-LIVTDGGYLNAVVDIELS 168

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           ++R++ WFS +    I+ TGFIAS P    TTL R+GSD+SAAI+ ALL A QV IWTDV
Sbjct: 169 KERIKAWFSSNGK-VIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDV 227

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVYSADPRKV +A +L +LSYQEA E+SYFGA VLHP+TI PV + +IPI+I+N FN  
Sbjct: 228 DGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPE 287

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 288 APGTLIS 294

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Length = 294

>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]

 Score =  281 bits (720), Expect = 4e-92
 Identities = 108/278 (38%), Positives = 150/278 (53%), Gaps = 9/278 (3%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR 91
           +    D ++  GE  SA +LAA +   G+D + +D R+  I   ++         +SE+R
Sbjct: 107 SPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERR 166

Query: 92  LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
           L +          +  GF     D   TTL R GSD+SAA + A L A +V IWTDVDGV
Sbjct: 167 LLR--LLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGV 224

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
           Y+ADPR V +A +L  +SY+EA E++Y GA VLHPR + P MR  IP+ I+N FN   PG
Sbjct: 225 YTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPG 284

Query: 212 IMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271
            +I      +          VKG A  DN+AL+ V G GM G+ G A  +FG + + G N
Sbjct: 285 TLITAETESDEP-------VVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEAGIN 337

Query: 272 VIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN 309
           V +I+Q+ SE S+ F VPE +      AL  +  E L 
Sbjct: 338 VDLITQSISEVSISFTVPESDAPRALRALLEEKLELLA 375

Length = 447

>gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

 Score =  274 bits (703), Expect = 1e-91
 Identities = 83/187 (44%), Positives = 120/187 (64%), Gaps = 2/187 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  ++     V+  GEL S+++++A +++ G+   W+D RE+ ++          D   S
Sbjct: 109 GELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDGFLNAVVDLKLS 167

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           ++RL +  ++     ++  GFIAS  D   TTL R GSD+SAA++ ALL A +V IWTDV
Sbjct: 168 KERLAQLLAEH-GKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDV 226

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPRKV +A +L+ LSY EA E++YFGA VLHPRTI P +R +IPI I+N FN  
Sbjct: 227 DGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPE 286

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 287 APGTLIS 293

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293

>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional

 Score =  249 bits (637), Expect = 2e-79
 Identities = 117/278 (42%), Positives = 160/278 (57%), Gaps = 18/278 (6%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN----QVDPDFSESEKRL 92
           D+++  GE  SA +L+  +R  GI    +   E  I+  T SN    +  P   ++ +R+
Sbjct: 123 DYILSFGERLSAPILSGALRDLGIKSVALTGGEAGII--TDSNFGNARPLP---KTYERV 177

Query: 93  EKWFSQSPSNTII--ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG 150
           ++         +I   TGFI  T + I TTL R GSD+SAAI+GA L A ++ IWTDVDG
Sbjct: 178 KERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDG 237

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVP 210
           V + DPR V EA ++  +SY EA E+SYFGA VLHPRTI P M   IP+ ++N FN   P
Sbjct: 238 VMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFP 297

Query: 211 GIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA 270
           G +I         D +     VK    I N+AL+N+ G GM GVPGTA  IF A+ + G 
Sbjct: 298 GTLITS-------DSESSKRVVKAVTLIKNVALINISGAGMVGVPGTAARIFSALAEEGV 350

Query: 271 NVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL 308
           NVIMISQ SSE ++   V E +++   +AL  +F E L
Sbjct: 351 NVIMISQGSSESNISLVVDEADLEKALKALRREFGEGL 388

Length = 465

>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

 Score =  233 bits (596), Expect = 2e-76
 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 2/177 (1%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
           ++  GE  SA++LAA +R  GI  + +D R+  I     ++        S +RL++  ++
Sbjct: 53  LLSFGERLSARLLAAALRDRGIKARSLDARQAGITT-DDNHGAARIIEISYERLKELLAE 111

Query: 99  SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
                 + TGFI    D   TTL R GSD+SAA + A L A +V IWTDVDG+Y+ADPR 
Sbjct: 112 I-GKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
           V EA ++  +SY EA E++YFGA VLHPR + P  + +IPI ++N FN   PG +I 
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT 227

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227

>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase

 Score =  236 bits (605), Expect = 6e-75
 Identities = 94/268 (35%), Positives = 142/268 (52%), Gaps = 11/268 (4%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWM-DTREVLIVNPTSSNQVDPDFSESEKRLEK 94
            D ++  GE  SA +L+A + + G+    +      ++ +               +RLE 
Sbjct: 105 MDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARV-IIEILTERLEP 163

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +      +  GF  +T     TTL R GSD++AA++ A L+A +  I+TDVDG+Y+ 
Sbjct: 164 LLEEGII--PVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTT 221

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V +A  +  +SY+E  E++ FGA VLHPRT+ P MR  IPIV+++ FN   PG +I
Sbjct: 222 DPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPEAPGTLI 281

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
                 E E     +  VKG +   N A V V G GM G PG    +FGA+ + G NV +
Sbjct: 282 V-ASTKEME-----EPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGINVDL 334

Query: 275 ISQASSEHSVCFAVPEKEVKAVAEALES 302
           I+Q+SSE S+ F V +++       L+S
Sbjct: 335 ITQSSSETSISFTVDKEDADQAKTLLKS 362

Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441

>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class

 Score =  208 bits (530), Expect = 3e-64
 Identities = 100/282 (35%), Positives = 142/282 (50%), Gaps = 15/282 (5%)

Query: 25  NVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVD-- 82
                  T    D +V HGE  S+ + +  +R  G+   W+D  E  I+  T  N  +  
Sbjct: 55  KAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGII--TDDNFGNAK 112

Query: 83  PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQV 142
            D   +E+RL     +     ++  GF  +T     TTL R GSD++AA++ A L+A +V
Sbjct: 113 IDIIATEERLLPLLEEG--IIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRV 170

Query: 143 TIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
            I+TDV GVY+ DPR V  A  +  +SY+EA E++ FGA VLHPRT+ P MR  +PI +R
Sbjct: 171 DIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVR 230

Query: 203 NIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIF 262
           + F+    G +I      EN         VKG A   N+  V V G GM G  G    IF
Sbjct: 231 SSFDPE-EGTLITNS--MENPP------LVKGIALRKNVTRVTVHGLGMLGKRGFLARIF 281

Query: 263 GAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304
           GA+ +   NV +ISQ  SE S+   V E +      AL+ + 
Sbjct: 282 GALAERNINVDLISQTPSETSISLTVDETDADEAVRALKDQS 323

This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score =  176 bits (449), Expect = 8e-52
 Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 16/256 (6%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN--QVDPDFSESE 89
           + + TD +V HGEL S  +   ++R+ G+  +W D R+V+    T     + +PD +   
Sbjct: 105 SPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMR---TDDRFGRAEPDVAALA 161

Query: 90  KRLEKWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           +  ++      +  ++ T GFI S      TTL R GSD+SAA++   L A +V IWTDV
Sbjct: 162 ELAQEQLLPLLAEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDV 221

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
            G+Y+ DPR V  A  +  +S++EA EM+ FGA VLHP T++P +R +IP+ + +  +  
Sbjct: 222 PGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPE 281

Query: 209 VPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDV 268
             G  IC    +            +  A   N  L+ +    M    G    +FG +   
Sbjct: 282 AGGTWICNDTENP--------PLFRAIALRRNQTLLTLHSLNMLHARGFLAEVFGILARH 333

Query: 269 GANVIMISQASSEHSV 284
             +V +I+  +SE SV
Sbjct: 334 KISVDLIT--TSEVSV 347

Length = 448

>gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

 Score =  169 bits (430), Expect = 2e-50
 Identities = 77/181 (42%), Positives = 104/181 (57%), Gaps = 5/181 (2%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDP---DFSESEKRLE 93
           D++V  GE  SA + +A +R  GI  + +D  E  I+   +     P    +    KRL 
Sbjct: 119 DYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLL 178

Query: 94  KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
               +     ++ TGFI +T D   TTL R GSD+SA I+GA L A ++ IW DVDGV +
Sbjct: 179 P-MLEDGKIPVV-TGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMT 236

Query: 154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
           ADPR V EA  +  LSY EA E++YFGA VLHPRT+ P M   IP+ ++N FN   PG +
Sbjct: 237 ADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTL 296

Query: 214 I 214
           I
Sbjct: 297 I 297

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298

>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score =  168 bits (427), Expect = 3e-50
 Identities = 64/188 (34%), Positives = 104/188 (55%), Gaps = 2/188 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  + +  D ++  GE  S+ + +  +R+ G+  +W D R VL  + +   +  PD +  
Sbjct: 106 GELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTD-SRFGRAAPDLNAL 164

Query: 89  EKRLEKWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
            +   K      + T++ T GFI ST     TTL R GSD+SAA++   L A ++ IWTD
Sbjct: 165 AELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTD 224

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           V G+Y+ DPR    A  ++ +S+ EA EM+ FGA VLHP T++P +R +IP+ + +  + 
Sbjct: 225 VAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDP 284

Query: 208 SVPGIMIC 215
              G +I 
Sbjct: 285 EAGGTLIT 292

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292

>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

 Score =  166 bits (421), Expect = 7e-46
 Identities = 92/259 (35%), Positives = 127/259 (49%), Gaps = 30/259 (11%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE---KW 95
           V+G GEL S  + AA +  +G+D  W+D RE L   P       P+ SE  + L    +W
Sbjct: 122 VLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALP------QPNQSEWSQYLSVSCQW 175

Query: 96  ---------FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
                    F+  P+  +I  GFIA   D     L R GSD SAA   A L A +V IWT
Sbjct: 176 QSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWT 235

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV G++SA+P++V +A +L  L Y EA E++  GA VLHPR+I P     IP+ I +   
Sbjct: 236 DVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTER 295

Query: 207 LSVPGIMICRPPVDENEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV 265
             + G  I         D      P VK  +  + + LV++E  GM    G    +F   
Sbjct: 296 PDLSGTSI---------DGDAEPVPGVKAISRKNGIVLVSMETIGMWQQVGFLADVFTLF 346

Query: 266 KDVGANVIMISQASSEHSV 284
           K  G +V +IS  SSE +V
Sbjct: 347 KKHGLSVDLIS--SSETNV 363

Length = 861

>gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

 Score =  163 bits (416), Expect = 3e-45
 Identities = 70/164 (42%), Positives = 99/164 (60%), Gaps = 2/164 (1%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
           VVGHGE+WSA+++AA++ + G+   W+D R  L     +  QVD     S   L++  +Q
Sbjct: 125 VVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVD--EGLSYPLLQQLLAQ 182

Query: 99  SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
            P   ++ TGFI+         L R+GSD+SA ++GAL    +VTIW+DV GVYSADPRK
Sbjct: 183 HPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRK 242

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
           V +A +L  L   EA E++   A VLH RT+ PV   DI + +R
Sbjct: 243 VKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLR 286

Length = 810

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score =  150 bits (382), Expect = 2e-42
 Identities = 91/290 (31%), Positives = 145/290 (50%), Gaps = 33/290 (11%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSESE 89
           D ++  GE  S  +LA  ++  G+  +     +  I+  T S         +DP      
Sbjct: 67  DMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGII--TDSAHGKARITDIDPS----- 119

Query: 90  KRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
            R+ +   +     + +  GF     D   TTL R GSD +A  + A L+A +  I+TDV
Sbjct: 120 -RIREALDE---GDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDV 175

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ DPR V +A  L  +SY+E  E++  GA VLHPR++    +Y++P+ +R+ F+  
Sbjct: 176 DGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS-D 234

Query: 209 VPGIMICRPPVDENEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
            PG +I        E+E+I++ P V G A   + A V V   G+   PG A  IFGA+ +
Sbjct: 235 NPGTLIT------GEEEEIMEQPVVTGIAFDKDEAKVTV--VGVPDKPGIAAQIFGALAE 286

Query: 268 VGANVIMISQASSEH---SVCFAVPEKEVKAVAEALESKFREALNAGRLS 314
              NV MI Q  SE     + F VP  +++   E LE + ++ + A  ++
Sbjct: 287 ANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLE-EVKDEIGAESVT 335

Length = 404

>gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

 Score =  140 bits (354), Expect = 2e-39
 Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 7/182 (3%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ------VDPDFSESEKRL 92
           V+  GEL S ++ AA +   G+  KW+D RE+L   PT   +         +   ++  L
Sbjct: 114 VLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALL 173

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
           +K  +   +  II  GFIA         L R GSD SAA   A L+A +  IWTDV G++
Sbjct: 174 QKRLA-DGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLF 232

Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           +A+P +V  A +L+ L Y EA E++  GA VLHPR I P  R +IP+V+R+     + G 
Sbjct: 233 TANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGT 292

Query: 213 MI 214
           +I
Sbjct: 293 LI 294

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 295

>gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

 Score =  133 bits (336), Expect = 7e-37
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 7/180 (3%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV-LIVNPTSSN-QVDPDFSESEKRLEK 94
           D +   GE  +AQ++AA +   GID +++  ++  L+V     N Q+ P   ES ++++K
Sbjct: 113 DALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILP---ESYQKIKK 169

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
                    ++  GF   + +    T  R GSD + AI+    +A     +TDVDG+Y+A
Sbjct: 170 LRD--SDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAA 227

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           +PR V+    +  ++Y+E  E+SY G +V H   +IP +   IPI I+N  +   PG +I
Sbjct: 228 NPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLI 287

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. Length = 288

>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed

 Score =  130 bits (329), Expect = 2e-34
 Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 19/214 (8%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV-LIVNPTSSN-QVDPDFSESEK 90
           +   D     GE  +A+++AA +   GI  +++D +E  +IV     N QV P   ES  
Sbjct: 109 DRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLP---ESYD 165

Query: 91  RLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG 150
            L+K   +     ++  GF   T D    T  R GSD + AI+   ++A     +TDVDG
Sbjct: 166 NLKKL--RDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDG 223

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVP 210
           +Y+A+PR V     ++ ++Y+E  E+SY G +V H   +IP  R  IPI I+N  N   P
Sbjct: 224 IYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDP 283

Query: 211 GIMICRPPVDENEDEQIIDSPV------KGFATI 238
           G +I        + +    +P+      KGF +I
Sbjct: 284 GTLI------VPDRDNKNKNPITGIAGDKGFTSI 311

Length = 454

>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

 Score =  125 bits (316), Expect = 2e-34
 Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 18/187 (9%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSES 88
            D ++  GE  SA +LA  + + GI    +   +  I+  T  +        +DP     
Sbjct: 64  LDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGIL--TDDHHGNARIIDIDP----- 116

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
            KR+ +   +   + ++  GF     D   TTL R GSD +A  + A L+A +  I+TDV
Sbjct: 117 -KRILEALEEG--DVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDV 173

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPR V +A  L  +SY E  EM+  GA VLHPR++    +Y++P+ +R+ F+  
Sbjct: 174 DGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFS-E 232

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 233 NPGTLIT 239

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239

>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

 Score =  120 bits (303), Expect = 2e-32
 Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 8/180 (4%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT--SSNQVDPDFSESE 89
           T+  TD +   GE  S  ++AA + ++GI    +D  +    +P      ++      S 
Sbjct: 62  TDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITK---VST 118

Query: 90  KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVD 149
            RL+           I +GF  +       TL R GSD +AA++ A L+A ++ I TDVD
Sbjct: 119 DRLKSLLENG--ILPILSGFGGTDEKET-GTLGRGGSDSTAALLAAALKADRLVILTDVD 175

Query: 150 GVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
           GVY+ADPRKV +A +L  L+Y+EA E++Y GA VL P+   P  R  IP+ I N  N   
Sbjct: 176 GVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGA 235

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248

>gnl|CDD|178166 PLN02551, PLN02551, aspartokinase

 Score =  125 bits (316), Expect = 2e-32
 Identities = 79/281 (28%), Positives = 144/281 (51%), Gaps = 24/281 (8%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV---NPTSSNQVDPDFSESEKRL 92
            D++V  GE  S ++ AA + K G+  +  D  ++  +   + T+++ ++  +    KRL
Sbjct: 165 RDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL 224

Query: 93  EKWFSQSPSNTIIATGFIA-STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
              +   P+  ++ TGF+         TTL R GSD +A  +G  L   ++ +W DVDGV
Sbjct: 225 HGDWIDDPAVPVV-TGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGV 283

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
            + DPR    AV +  L++ EA E++YFGA VLHP+++ P    DIP+ ++N +N + PG
Sbjct: 284 LTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPG 343

Query: 212 IMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271
            +I +     +  + ++ S V       N+ ++++  T M G  G    +F   +D+G +
Sbjct: 344 TLITK---TRDMSKAVLTSIVLK----RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGIS 396

Query: 272 VIMISQASSEHSV----------CFAVPEKEVKAVAEALES 302
           V ++  A+SE S+             + ++E+  + E LE 
Sbjct: 397 VDVV--ATSEVSISLTLDPSKLWSRELIQQELDHLVEELEK 435

Length = 521

>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed

 Score =  122 bits (309), Expect = 5e-32
 Identities = 75/268 (27%), Positives = 135/268 (50%), Gaps = 11/268 (4%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE-KRLEK 94
            D ++  GE+ S+ + + ++ +NGI    +   +  I+  T  N  +    E    R+ +
Sbjct: 71  QDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGII--TDDNFTNAKIIEVNPDRILE 128

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +   + ++  GF   T +   TTL R GSD +AA +G  L+A  V I+TDVDG+ +A
Sbjct: 129 ALEEG--DVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTA 186

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V +A +L  +SY E ++M+Y GA V+HPR +   M+ +IP+ IR+ ++   PG +I
Sbjct: 187 DPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYS-DSPGTLI 245

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
                 +   + + +  + G A + N+  + V+             +F A+ + G +V  
Sbjct: 246 TSLGDAKGGID-VEERLITGIAHVSNVTQIKVKAKE--NAYDLQQEVFKALAEAGISVDF 302

Query: 275 ISQASSEHSVCFAVPEKEVKAVAEALES 302
           I+       V F V +++ +   E LE+
Sbjct: 303 IN--IFPTEVVFTVSDEDSEKAKEILEN 328

Length = 403

>gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

 Score =  117 bits (294), Expect = 4e-31
 Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 6/180 (3%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE-SEKRLEK 94
            D ++  GE+ SA +L + +R  G+    +   +  I+  T  N  +    + + K++  
Sbjct: 69  LDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGIL--TDDNYSNAKIIKVNPKKILS 126

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +   + ++  GF   T D   TTL R GSD +AA +GA L A  V I+TDVDG+ +A
Sbjct: 127 ALKEG--DVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTA 184

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V  A IL  +SY E ++M++ GA V+HPR +   M+ +IPI IR+  +   PG +I
Sbjct: 185 DPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMS-ENPGTLI 243

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244

>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

 Score =  114 bits (289), Expect = 2e-30
 Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 18/187 (9%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSES 88
            D ++  GE  S  +LA  + + GI    +   +  I+  T  +        +DPD    
Sbjct: 64  LDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGIL--TDGHHGKARIIDIDPD---- 117

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
             R+ +   +   + +I  GF     D   TTL R GSD SA  + A L A +  I+TDV
Sbjct: 118 --RIRELLEEG--DVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDV 173

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPR V +A  L  +SY E  EM+  GA VLHPR++    +Y +P+ + + F+  
Sbjct: 174 DGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFS-E 232

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 233 EPGTLIT 239

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score =  118 bits (297), Expect = 2e-29
 Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 12/213 (5%)

Query: 102 NTIIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV 159
             ++  GF  I+ + +   TTL R GSD SA  + A L A    I+TDV GV + DPR V
Sbjct: 129 KVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLV 188

Query: 160 SEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV 219
            EA ++  +S  E  E++  GA+VLHPR +     Y +P+V+R+ ++ + PG ++  PP 
Sbjct: 189 PEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWSDA-PGTLVTSPPP 247

Query: 220 DENEDEQI-IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278
                  + +  PV G    ++ A V +    +   PG A  +F  +   G NV +I Q+
Sbjct: 248 RPRSLGGLELGKPVDGVELDEDQAKVALL--RVPDRPGIAAQLFEELAAQGVNVDLIIQS 305

Query: 279 SSEHS---VCFAVPEKEVK---AVAEALESKFR 305
             E +   + F V E E+K   AVAEA+     
Sbjct: 306 IHEGNSNDIAFTVAENELKKAEAVAEAIAPALG 338

Length = 587

>gnl|CDD|153193 cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

 Score =  106 bits (267), Expect = 4e-29
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           +AL+N+EGTGM GVPG A  IF A+   G NVI+ISQASSEHS+ F V E +     EAL
Sbjct: 1   VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADKALEAL 60

Query: 301 ESKFREALNAGRLSQV 316
           E +F   + AG +  +
Sbjct: 61  EEEFALEIKAGLIKPI 76

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Also included in this CD is the first of two ACT domains of a tetrameric, monofunctional, threonine-sensitive, AK found in Methanococcus jannaschii and other related archaeal species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 80

>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family

 Score =  109 bits (274), Expect = 2e-28
 Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 26/172 (15%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
             VV  GE   A+ +A ++   G+    +D                       + +++  
Sbjct: 80  RIVVSLGERLGARAVALLLSDGGLPAVRLD-------------------LVDTEAIKELL 120

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
                   + TGF         TTL R  SD  AA++   L A ++ I TDVDGVY+ADP
Sbjct: 121 EAG--VVPVITGFGGENDTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADP 178

Query: 157 RKVSEAVILRTLSYQEAWEMS-----YFGANVLHPRTIIPVMRYDIPIVIRN 203
           RK  +A ++  LSY EA E+        G  V HP  +    R  IP+ I N
Sbjct: 179 RKNPDAKLIPELSYDEAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230

This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230

>gnl|CDD|235646 PRK05925, PRK05925, aspartate kinase; Provisional

 Score =  111 bits (279), Expect = 1e-27
 Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 6/175 (3%)

Query: 43  GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQS-PS 101
           GE  SA ++ A      +  ++++ R+V I+      +  PD +  +     W   +   
Sbjct: 109 GEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAVPDLALMQ---TAWHELALQE 164

Query: 102 NTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVS 160
           + I I  GFI +      T L R GSDFSA+++  L +A +V I+TDV+G+Y+ DP+ + 
Sbjct: 165 DAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIK 224

Query: 161 EAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
           +A ++  LS++E   ++ FGA VLHP  + P +R  IPI + + F+++  G  I 
Sbjct: 225 DAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIY 279

Length = 440

>gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated

 Score =  109 bits (275), Expect = 2e-27
 Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 4/180 (2%)

Query: 22  FLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQV 81
            L N      +E+  D+++  GE  SA + A  +   GI  K +D  E+L    +  N  
Sbjct: 88  KLFNSRPDLPSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGN-A 146

Query: 82  DPDFSESEKRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAH 140
             D  +S++ ++  +       + +  GFI +  +    TL R GSD+SA  +G LL A 
Sbjct: 147 FIDIKKSKRNVKILYELLERGRVPVVPGFIGNL-NGFRATLGRGGSDYSAVALGVLLNAK 205

Query: 141 QVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
            V I +DV+G+Y+ADP+ V  A ++  LSY EA   +  G   LH + I PV +  IPI+
Sbjct: 206 AVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPV-KGKIPII 264

Length = 341

>gnl|CDD|239780 cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

 Score =  106 bits (267), Expect = 9e-27
 Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 2/179 (1%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF-SESEKRLEKW 95
           D V+  GE  S + +AAV+R  G+D +++D   + +    S   +D  F  E  + L + 
Sbjct: 126 DLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHI-VDLDFSIEALDQTFYDELAQVLGEK 184

Query: 96  FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSAD 155
            +   +   + TGF  + P  + + + R  +D  AA+    L A ++ IW +VDG+++AD
Sbjct: 185 ITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTAD 244

Query: 156 PRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           PRKV  A +L +++ +EA E++Y+G+ V+HP T+  V++  IPI I+N+ N    G +I
Sbjct: 245 PRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVI 303

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Length = 306

>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative

 Score = 90.2 bits (224), Expect = 1e-20
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRL 92
           E+  D+++  GE  SA + A      GI+ K +D  ++        N    D  +S++  
Sbjct: 94  EALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIFFAKGDFGN-AFIDIKKSKRNA 147

Query: 93  EKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
           +  +    S  I +  GF  +  +    TL R GSD+SA  +G LL +  V I +DV+G+
Sbjct: 148 KILYEVLESGKIPVIPGFYGNL-NGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGI 206

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
           ++ADP+ V  A ++  LSY+E    +  G   L  +       Y IP++
Sbjct: 207 FTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVL 255

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between [Amino acid biosynthesis, Aspartate family]. Length = 327

>gnl|CDD|153164 cd04892, ACT_AK-like_2, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

 Score = 79.8 bits (198), Expect = 3e-19
 Identities = 30/65 (46%), Positives = 39/65 (60%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           ALV+V G GM G PG A  IF A+ + G N+IMISQ SSE ++ F V E +     +AL 
Sbjct: 1   ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALH 60

Query: 302 SKFRE 306
            +F  
Sbjct: 61  EEFFL 65

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different AK isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are AKs with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 65

>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated

 Score = 84.0 bits (208), Expect = 3e-18
 Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
           D ++  GE  S  +LA  + K G   + +   +  IV     N       ++   + +  
Sbjct: 67  DVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTS-TITELL 125

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
            Q     +I  GF     +   TTL R GSD +A  +   L A +  I+TDVDGVY+ DP
Sbjct: 126 EQD--QIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDP 183

Query: 157 RKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR 216
           R V  A  L  + +     M+  GA VLH  ++    ++ +P+ + + F           
Sbjct: 184 RVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSF----------- 232

Query: 217 PPVDENEDEQIID----SPVKGFATIDNLALVNVE 247
              +  E   I        V G A   +LAL+ VE
Sbjct: 233 ---EVGEGTLIKGEAGTQAVCGIALQRDLALIEVE 264

Length = 392

>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEK 291
           V+      ++ +V V G GMAG PG A  IF A+ + G N+ MISQ SSE ++ F V E+
Sbjct: 389 VRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEE 448

Query: 292 EVKAVAEALESKFRE 306
           + +   + L  +F  
Sbjct: 449 DGERAVKVLHDEFIL 463

Length = 465

>gnl|CDD|153140 cd04868, ACT_AK-like, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

 Score = 69.1 bits (170), Expect = 2e-15
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           A V++ G GM G PG A  IF A+ + G NV MISQ+ SE ++ F V E +++   +AL 
Sbjct: 1   AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH 60

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are aspartokinases with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this AK family CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 60

>gnl|CDD|153196 cd04924, ACT_AK-Arch_2, ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

 Score = 64.4 bits (157), Expect = 1e-13
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           +A+V V G+GM G PG A  +FGA+   G NVIMISQ SSE+++ F V E +  A  +A+
Sbjct: 1   VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAV 60

Query: 301 ESKF 304
             +F
Sbjct: 61  HDEF 64

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
           + LALV + G  ++   G A  +FG ++    N+ MI   +S H++CF VPE + + V +
Sbjct: 382 EGLALVALIGNNLSKACGVAKRVFGVLEPF--NIRMICYGASSHNLCFLVPESDAEQVVQ 439

Query: 299 ALESKFREA 307
           AL     E 
Sbjct: 440 ALHQNLFEG 448

Length = 448

>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D +AA+    + A  +   T+VDGVY ADP+K  +A     +SY E  +    G  V+  
Sbjct: 135 DTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKK---GLKVMDA 191

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPG 211
             +    R  IPI+   +FN   PG
Sbjct: 192 TALTLCRRNKIPII---VFNGLKPG 213

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229

>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed

 Score = 57.1 bits (139), Expect = 4e-09
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAV-PEKEVKAV 296
             +LA++ V G GM    G A  I  A+ +   N+ MI+Q SSE S+ F V  E   KAV
Sbjct: 382 EHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAV 441

Length = 454

>gnl|CDD|153188 cd04916, ACT_AKiii-YclM-BS_2, ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           LAL+ V G GM    G +     A+   G N+ MI+Q SSE S+   V  ++     +A+
Sbjct: 1   LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAI 60

Query: 301 ESKF 304
             +F
Sbjct: 61  YEEF 64

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66

>gnl|CDD|153189 cd04917, ACT_AKiii-LysC-EC_2, ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           LALV + G  ++   G    IF A++D+  NV MI   +S H++CF V E++   V + L
Sbjct: 1   LALVALIGNDISETAGVEKRIFDALEDI--NVRMICYGASNHNLCFLVKEEDKDEVVQRL 58

Query: 301 ESKFRE 306
            S+  E
Sbjct: 59  HSRLFE 64

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 64

>gnl|CDD|153194 cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPE-KEVKAVAEA 299
           L+++ + G GMAG PG A   F A+     N+  I+Q SSE ++   + E    KA+   
Sbjct: 1   LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAV 60

Query: 300 LESKF 304
            E  F
Sbjct: 61  HERFF 65

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66

>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 146 TDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205
           T+VDGVY ADP+K  +A     L+Y E  E       V+    I       IPI+   +F
Sbjct: 156 TNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL---KVMDATAISLARDNKIPII---VF 209

Query: 206 NLSVPG 211
           N++ PG
Sbjct: 210 NMNKPG 215

Length = 231

>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism]

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 127 DFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           D +AA+    + A  +   T  VDGVY ADP+K  +A    TL+Y E  ++      V+ 
Sbjct: 142 DTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLK---VMD 198

Query: 186 PRTIIPVMRYDIPIVIRNIFN 206
           P          IPI++ NI  
Sbjct: 199 PTAFSLARDNGIPIIVFNINK 219

Length = 238

>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D +AA+    + A  +   T+VDGVY+ADP+K  +A    T++Y EA +       V+  
Sbjct: 138 DTAAALRAIEINADVILKGTNVDGVYTADPKKNKDAKKYDTITYNEALKK---NLKVMDL 194

Query: 187 RTIIPVMRYDIPIVIRNIF 205
                    ++PIV+ NI 
Sbjct: 195 TAFALARDNNLPIVVFNID 213

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232

>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+    + A  +   T VDGVY ADP+K   A     L+Y E       G  V+ 
Sbjct: 136 TDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GLKVMD 192

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                     ++PIV   +FN++ PG
Sbjct: 193 ATAFTLCRDNNLPIV---VFNINEPG 215

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231

>gnl|CDD|239781 cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
           + +   GE  SA   A +++  G++ +++D          S  +   D +  E+  E + 
Sbjct: 134 ELLASLGEAHSAFNTALLLQNRGVNARFVDL---------SGWRDSGDMTLDERISEAFR 184

Query: 97  SQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSAD 155
              P + + I TG+ A   + +     R  S+ + + +  L  A +  I  +   + SAD
Sbjct: 185 DIDPRDELPIVTGY-AKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSAD 242

Query: 156 PRKVSEAV---ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           P+ V E     I RT +Y  A +++  G   +HP+    + +  IP+ ++N F    PG 
Sbjct: 243 PKLVGEDKARPIGRT-NYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGT 301

Query: 213 MI 214
           +I
Sbjct: 302 LI 303

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. Length = 304

>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+    ++A  +   T VDG+Y  DP+K  +A  +  L++ EA +M   G  V+ 
Sbjct: 134 TDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMD 190

Query: 186 PRTIIPVMRYDIPIVIRNIF 205
                   +Y I I++ N F
Sbjct: 191 TEAFSICKKYGITILVINFF 210

Length = 231

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 250 GMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESKF 304
           G+   PG    +FGA+ D G N+  ISQ++S        +   V E++++A  EAL+   
Sbjct: 6   GVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALKKLL 65

Query: 305 R 305
            
Sbjct: 66  G 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153195 cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK 303
           V++ G GM   PG A  +F A+ + G N+ MIS  +SE  +   V E + +    AL   
Sbjct: 3   VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS--TSEIKISCLVDEDDAEKAVRALHEA 60

Query: 304 F 304
           F
Sbjct: 61  F 61

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
           D++A V+V G GM   PG A  +F A+ + G N+ MIS  +SE  +   + EK ++    
Sbjct: 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS--TSEIKISVLIDEKYLELAVR 395

Query: 299 ALESKF 304
           AL   F
Sbjct: 396 ALHEAF 401

Length = 404

>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177
           D  AA++    +A  +   T+VDGVY  DP+K  +A     L+ +E  E+ 
Sbjct: 118 DAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIV 168

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 221

>gnl|CDD|153208 cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           A V++ G GM   PG A  +F A+ + G N+ MIS  +SE  +   + E + +    AL 
Sbjct: 1   AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS--TSEIKISCLIDEDDAEKAVRALH 58

Query: 302 SKFR 305
             F 
Sbjct: 59  EAFE 62

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Conserved residues in the ACT domains have been shown to be involved in this concerted feedback inhibition. Also included in this CD are the AKs of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single AKs found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis strain 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans AKs are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. This CD includes the second ACT domain C-terminal to the AK catalytic domain of the alpha subunit and the second ACT domain of the beta subunit that lacks the AK catalytic domain. Unlike the C. glutamicum AK beta subunit, which is involved in feedback regulation, the B. subtilis AKII beta subunit is not. Cyanobacteria AKs are unique to this CD and they have a unique domain architecture with two tandem pairs of ACT domains, C-terminal to the catalytic AK domain. In this CD, the second and fourth cyanobacteria AK ACT domains are present. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63

>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177
           D  AA++   L A  +   T+VDGVYS DPRK  +A     LS  E  ++ 
Sbjct: 118 DAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIV 168

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 221

>gnl|CDD|236396 PRK09181, PRK09181, aspartate kinase; Validated

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 36/286 (12%)

Query: 43  GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ-SPS 101
           GE  SA   A +++  G++ +++D           +   D D    ++R++K F     +
Sbjct: 146 GEAHSAFNTALLLQNRGVNARFVDL----------TGWDDDDPLTLDERIKKAFKDIDVT 195

Query: 102 NTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY---SADPR 157
             + I TG+ A   + +  T  R  S+ + + +  L  A +  I  +    Y   SADP+
Sbjct: 196 KELPIVTGY-AKCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKE----YHLSSADPK 250

Query: 158 KVSE--AV-ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
            V E   V I RT +Y  A +++  G   +HP+    + +  IP+ I+N F    PG +I
Sbjct: 251 LVGEDKVVPIGRT-NYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEHPGTLI 309

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
            +  V E    +II       A  D +  + V    M G  G    I   +      V  
Sbjct: 310 TKDYVSEQPRVEII-------AGSDKVFALEVFDQDMVGEDGYDLEILEILTR--HKVSY 360

Query: 275 ISQASSEHSVCFAVPE--KEVKAVAEALESKFREA-LNAGRLSQVC 317
           IS+A++ +++   +    K +K V   LE ++  A +   +++ V 
Sbjct: 361 ISKATNANTITHYLWGSLKTLKRVIAELEKRYPNAEVTVRKVAIVS 406

Length = 475

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           A V++ G GM G PG A  +F A+ D G N+ MI  A+SE      V E +     +A+ 
Sbjct: 520 AKVSIVGAGMPGTPGVAARMFRALADAGINIEMI--ATSEIRTSCVVAEDDGVKALQAVH 577

Query: 302 SKFREALNA 310
             F  A   
Sbjct: 578 QAFGLAGEE 586

Length = 587

>gnl|CDD|153185 cd04913, ACT_AKii-LysC-BS-like_1, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHS---VCFAVPEKEVKAVAEALESKFREALNA 310
            PG A  IFGA+ +   NV MI Q  S      + F VP+ ++K     LE K ++ L A
Sbjct: 12  KPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKKALAVLE-KLKKELGA 70

Query: 311 GRL 313
             +
Sbjct: 71  EEV 73

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Conserved residues in the ACT domains have been shown to be involved in this concerted feedback inhibition. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomonas aeruginosa, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. This CD includes the first ACT domain C-terminal to the AK catalytic domain of the alpha subunit and the first ACT domain of the beta subunit that lacks the AK catalytic domain. Unlike the C. glutamicum AK beta subunit, which is involved in feedback regulation, the B. subtilis AKII beta subunit is not. Cyanobacteria aspartokinases are unique to this CD and they have a unique domain architecture with two tandem pairs of ACT domains, C-terminal to the catalytic AK domain. In this CD, the first and third cyanobacteria AK ACT domains are present. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|222411 pfam13840, ACT_7, Family description

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 237 TIDNLALVNVEGTGMAG-VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA 295
           + D    ++V G G+   VPG    I   + + G ++  IS   +  +    VPE++++ 
Sbjct: 2   SEDGWRKLSVVGPGLDFDVPGILAKITSPLAEAGISIFQIS---TYDTDYILVPEEDLEK 58

Query: 296 VAEALES 302
              AL  
Sbjct: 59  AVNALHE 65

The ACT domain is a structural motif of 70-90 amino acids that functions in the control of metabolism, solute transport and signal transduction. They are thus found in a variety of different proteins in a variety of different arrangements. In mammalian phenylalanine hydroxylase the domain forms no contacts but promotes an allosteric effect despite the apparent lack of ligand binding. Length = 65

>gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 11/38 (28%), Positives = 24/38 (63%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT 167
           +A++  L+ A  + + +DVDG+Y  +PR+  +A ++  
Sbjct: 148 SALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPE 185

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR. Length = 251

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVP----EKEVK 294
            N+A +++ G GM G PG A  +F  + + G N+ MIS  +SE  V   +     +K ++
Sbjct: 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEVKVSCVIDAEDGDKALR 403

Query: 295 AVAEALE 301
           AV EA E
Sbjct: 404 AVCEAFE 410

Length = 587

>gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional

 Score = 40.1 bits (95), Expect = 0.001
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT 167
           D  +A++  L+ A  + + TDVDG+Y+ADPRK  +A ++  
Sbjct: 154 DTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPE 194

Length = 372

>gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 12/39 (30%), Positives = 25/39 (64%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165
           D  +A++  L+ A  + + +D+DG+Y A+PR   +A ++
Sbjct: 152 DTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLI 190

Length = 369

>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165
           D  +A++  L+ A  + + TDVDG+Y ADPR   +A ++
Sbjct: 146 DTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLI 184

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family [Amino acid biosynthesis, Glutamate family]. Length = 363

>gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE 172
           +D  A ++  ++ A  +    D DG+Y+ADP+K  +A  +  +S  E
Sbjct: 163 TDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAE 209

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 262

>gnl|CDD|153163 cd04891, ACT_AK-LysC-DapG-like_1, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHS---VCFAVPEKEVKAVAEALE 301
            PG A  IF A+ + G NV MI Q+ S      + F VP+ +++     LE
Sbjct: 11  KPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSDLEKALAILE 61

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	100.0
PLN02551	521	aspartokinase	100.0
PRK09034	454	aspartate kinase; Reviewed	100.0
PRK06291	465	aspartate kinase; Provisional	100.0
PRK09084	448	aspartate kinase III; Validated	100.0
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	100.0
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	100.0
PRK09181	475	aspartate kinase; Validated	100.0
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	100.0
PRK05925	440	aspartate kinase; Provisional	100.0
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	100.0
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	100.0
PRK08841	392	aspartate kinase; Validated	100.0
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	100.0
PRK06635	404	aspartate kinase; Reviewed	100.0
PRK08210	403	aspartate kinase I; Reviewed	100.0
PRK07431	587	aspartate kinase; Provisional	100.0
cd04245	288	AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki	100.0
cd04257	294	AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa	100.0
cd04258	292	AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki	100.0
cd04243	293	AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina	100.0
cd04247	306	AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa	100.0
PRK08373	341	aspartate kinase; Validated	100.0
cd04244	298	AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina	100.0
cd04259	295	AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super	100.0
TIGR02078	327	AspKin_pair Pyrococcus aspartate kinase subunit, p	100.0
cd04248	304	AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S	100.0
cd04261	239	AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina	100.0
cd04260	244	AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase	100.0
cd04234	227	AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK)	100.0
cd04246	239	AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina	100.0
cd02115	248	AAK Amino Acid Kinases (AAK) superfamily, catalyti	99.97
PRK14558	231	pyrH uridylate kinase; Provisional	99.94
cd04242	251	AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K	99.92
cd04239	229	AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik	99.92
PF00696	242	AA_kinase: Amino acid kinase family Match to Gluta	99.91
PRK00358	231	pyrH uridylate kinase; Provisional	99.91
PRK12314	266	gamma-glutamyl kinase; Provisional	99.91
PRK14557	247	pyrH uridylate kinase; Provisional	99.9
cd04254	231	AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi	99.9
TIGR02075	233	pyrH_bact uridylate kinase. This protein, also cal	99.89
PRK13402	368	gamma-glutamyl kinase; Provisional	99.87
COG0528	238	PyrH Uridylate kinase [Nucleotide transport and me	99.87
PRK14556	249	pyrH uridylate kinase; Provisional	99.87
PRK05429	372	gamma-glutamyl kinase; Provisional	99.85
cd04253	221	AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP	99.85
TIGR01027	363	proB glutamate 5-kinase. Bacterial ProB proteins h	99.84
TIGR02076	221	pyrH_arch uridylate kinase, putative. This family	99.83
cd04241	252	AAK_FomA-like AAK_FomA-like: This CD includes a fo	99.82
PRK14058	268	acetylglutamate/acetylaminoadipate kinase; Provisi	99.82
cd04250	279	AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase	99.8
PRK00942	283	acetylglutamate kinase; Provisional	99.78
cd04249	252	AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina	99.78
TIGR00761	231	argB acetylglutamate kinase. This model describes	99.78
COG0263	369	ProB Glutamate 5-kinase [Amino acid transport and	99.77
cd04238	256	AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate	99.76
PLN02512	309	acetylglutamate kinase	99.75
cd04251	257	AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina	99.74
cd04255	262	AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th	99.74
CHL00202	284	argB acetylglutamate kinase; Provisional	99.74
PTZ00489	264	glutamate 5-kinase; Provisional	99.73
cd04256	284	AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase	99.73
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	99.73
COG1608	252	Predicted archaeal kinase [General function predic	99.68
COG0548	265	ArgB Acetylglutamate kinase [Amino acid transport	99.63
TIGR01092	715	P5CS delta l-pyrroline-5-carboxylate synthetase. T	99.59
cd04236	271	AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA	99.51
cd04252	248	AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam	99.49
cd04915	66	ACT_AK-Ectoine_2 ACT domains located C-terminal to	99.49
PRK12353	314	putative amino acid kinase; Reviewed	99.49
cd04235	308	AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot	99.49
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	99.47
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	99.45
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	99.42
cd04237	280	AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG)	99.41
TIGR00746	310	arcC carbamate kinase. The seed alignment for this	99.4
PRK05279	441	N-acetylglutamate synthase; Validated	99.4
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	99.4
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	99.36
PRK12686	312	carbamate kinase; Reviewed	99.35
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	99.35
cd04917	64	ACT_AKiii-LysC-EC_2 ACT domains located C-terminal	99.34
cd04920	63	ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AK	99.34
TIGR01890	429	N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi	99.33
KOG1154	285	consensus Gamma-glutamyl kinase [Amino acid transp	99.31
PLN02551	521	aspartokinase	99.31
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	99.31
PRK12454	313	carbamate kinase-like carbamoyl phosphate syntheta	99.3
cd04240	203	AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin	99.29
PRK06291	465	aspartate kinase; Provisional	99.25
PRK12354	307	carbamate kinase; Reviewed	99.23
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	99.22
PRK09181	475	aspartate kinase; Validated	99.22
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	99.21
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	99.18
PRK09034	454	aspartate kinase; Reviewed	99.15
PRK07431	587	aspartate kinase; Provisional	99.15
PRK09411	297	carbamate kinase; Reviewed	99.14
PRK09084	448	aspartate kinase III; Validated	99.1
PRK12352	316	putative carbamate kinase; Reviewed	99.1
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	99.05
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	99.04
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	99.02
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	99.01
PRK04531	398	acetylglutamate kinase; Provisional	99.0
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	98.95
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	98.93
PLN02825	515	amino-acid N-acetyltransferase	98.91
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	98.91
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	98.89
PRK05925	440	aspartate kinase; Provisional	98.88
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	98.88
PRK06635	404	aspartate kinase; Reviewed	98.87
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	98.86
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	98.85
PRK08210	403	aspartate kinase I; Reviewed	98.85
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	98.82
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	98.78
COG2054	212	Uncharacterized archaeal kinase related to asparto	98.77
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	98.64
COG0549	312	ArcC Carbamate kinase [Amino acid transport and me	98.55
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	98.54
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	98.52
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	98.34
cd04910	71	ACT_AK-Ectoine_1 ACT domains located C-terminal to	97.77
cd04911	76	ACT_AKiii-YclM-BS_1 ACT domains located C-terminal	97.53
PRK08841	392	aspartate kinase; Validated	97.38
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	97.04
COG3830	90	ACT domain-containing protein [Signal transduction	96.97
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.34
COG3603	128	Uncharacterized conserved protein [Function unknow	96.12
KOG2436	520	consensus Acetylglutamate kinase/acetylglutamate s	96.04
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	95.96
cd02116	60	ACT ACT domains are commonly involved in specifica	95.26
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	95.05
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	94.98
PRK04435	147	hypothetical protein; Provisional	94.82
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	94.53
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	94.41
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	93.68
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	93.2
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	92.84
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	92.77
COG4747	142	ACT domain-containing protein [General function pr	92.22
PRK00194	90	hypothetical protein; Validated	92.09
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	91.84
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	91.71
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	91.59
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	91.14
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	91.06
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	91.03
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	90.84
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	90.63
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	90.24
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	90.07
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	89.7
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	89.31
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	87.5
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	87.29
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	85.52
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	84.49
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	84.46
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	84.28
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	83.67
PRK11589	190	gcvR glycine cleavage system transcriptional repre	83.35
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	83.15
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	82.99
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	81.87
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	81.49
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	80.4
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	80.24

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=100.00  E-value=8.7e-63  Score=483.22  Aligned_cols=285  Identities=39%  Similarity=0.583  Sum_probs=264.6

Q ss_pred             cCCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEec
Q 020431           28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIAT  107 (326)
Q Consensus        28 ~~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~  107 (326)
                      .++.+++.+|+++|+||++|+++|+.+|+++|++|.+++++++++.+++.+++..++...+...+.++++  .+.|||++
T Consensus       103 ~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~--~~~v~Vv~  180 (447)
T COG0527         103 LGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLE--EGKVPVVA  180 (447)
T ss_pred             ccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhc--CCcEEEec
Confidence            3678999999999999999999999999999999999999999999998888776665444333776776  89999999


Q ss_pred             CccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchh
Q 020431          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (326)
Q Consensus       108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~  187 (326)
                      ||+|.+++|+++|||||||||+|++||.+++|+++.||||||||||+|||++|+|+++++|||+||.||+++|++|+||+
T Consensus       181 GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHpr  260 (447)
T COG0527         181 GFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPR  260 (447)
T ss_pred             CceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHh
Q 020431          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD  267 (326)
Q Consensus       188 a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~  267 (326)
                      |++|++++|||++|+|+++|+.+||+|..+....       .+.+++|+..+|+++|++.|..|...+|+.+++|.+|++
T Consensus       261 av~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~~-------~~~v~gIa~~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~  333 (447)
T COG0527         261 AVEPAMRSGIPLRIKNTFNPDAPGTLITAETESD-------EPVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAE  333 (447)
T ss_pred             HHHHHHhcCCcEEEEecCCCCCCceEEecCCcCC-------CCceEEEEeCCCeEEEEEEccCccccccHHHHHHHHHHH
Confidence            9999999999999999999999999998864321       257999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       268 ~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      +||+++||+|+.++.+++|++++.+.+++.+.|++.+.....     +++++.++|+|+
T Consensus       334 ~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~~~-----~v~~~~~~a~vs  387 (447)
T COG0527         334 AGINVDLITQSISEVSISFTVPESDAPRALRALLEEKLELLA-----EVEVEEGLALVS  387 (447)
T ss_pred             cCCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhhcc-----eEEeeCCeeEEE
Confidence            999999999999999999999999999999999998866554     799999999874

>PLN02551 aspartokinase

Probab=100.00  E-value=1.7e-59  Score=468.53  Aligned_cols=299  Identities=25%  Similarity=0.425  Sum_probs=259.6

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhH
Q 020431           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE   89 (326)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~   89 (326)
                      .+...++.|+++++     ++.+++.+|+++|+||+||+++++.+|+++|++|.+++++++++++++.|++..++ ..+.
T Consensus       139 ~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~-~~~~  217 (521)
T PLN02551        139 VVEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL-EATY  217 (521)
T ss_pred             HHHHHHHHHHHHHHhhhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchh-hhhH
Confidence            35566777777765     47889999999999999999999999999999999999999988888888876665 3444


Q ss_pred             HHHHHHhhc---CCCcEEEecCccccC-CCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEE
Q 020431           90 KRLEKWFSQ---SPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (326)
Q Consensus        90 ~~i~~~l~~---~~~~ipVv~Gfi~~~-~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i  165 (326)
                      +.+.+.+..   ..+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++.+|||||||||+|||++|+|+++
T Consensus       218 ~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l  297 (521)
T PLN02551        218 PAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPV  297 (521)
T ss_pred             HHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEe
Confidence            555555421   245899999999999 8999999999999999999999999999999999999999999999999999


Q ss_pred             eeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEE
Q 020431          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVN  245 (326)
Q Consensus       166 ~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~Is  245 (326)
                      ++|||+||.||+++|++|+||+|+.||++++||++|+|+++|+.+||+|..... +      ....+++|+..+|+++|+
T Consensus       298 ~~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi~vknt~~p~~~GT~I~~~~~-~------~~~~v~~It~~~~v~li~  370 (521)
T PLN02551        298 PYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPGTLITKTRD-M------SKAVLTSIVLKRNVTMLD  370 (521)
T ss_pred             cccCHHHHHHHHhCCCcccCHHHHHHHHHCCceEEEEecCCCCCCCcEEecccc-c------CCCcccceecCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999976421 1      234699999999999999


Q ss_pred             EecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHH---HHHhcCCCCcceEEEcCe
Q 020431          246 VEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF---REALNAGRLSQVCLSFWL  322 (326)
Q Consensus       246 ivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f---~~~~~~~~~~~v~~~~~~  322 (326)
                      |.|.+|.+.+|+++++|+.|+++||+|+||+  +|+.+|||++++++... .+.+.+.+   ..++.  .+.++++++++
T Consensus       371 i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe~sIs~~v~~~~~~~-~~~i~~~l~~l~~el~--~~~~V~v~~~v  445 (521)
T PLN02551        371 IVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSISLTLDPSKLWS-RELIQQELDHLVEELE--KIAVVNLLQGR  445 (521)
T ss_pred             EecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccCCEEEEEEehhHhhh-hhhHHHHHHHHHHHhh--cCCeEEEeCCE
Confidence            9999999999999999999999999999998  56899999999998755 32332222   22333  37889999999


Q ss_pred             eecC
Q 020431          323 CDYT  326 (326)
Q Consensus       323 ~~~~  326 (326)
                      ++|+
T Consensus       446 AiIS  449 (521)
T PLN02551        446 SIIS  449 (521)
T ss_pred             EEEE
Confidence            9874

>PRK09034 aspartate kinase; Reviewed

Probab=100.00  E-value=2.6e-57  Score=448.82  Aligned_cols=295  Identities=23%  Similarity=0.378  Sum_probs=258.9

Q ss_pred             HHHHHHHHhhhcCCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHh
Q 020431           17 RSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF   96 (326)
Q Consensus        17 ~~~~~~l~~~~~~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l   96 (326)
                      ...++.|..++ .+.+++.+|.++|+||+||+.+++.+|+++|+++.+++++++++++++++++..++.. +.+.+..++
T Consensus        94 ~~~l~~l~~~~-~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~-~~~~~~~~~  171 (454)
T PRK09034         94 EEILEHLANLA-SRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPE-SYDNLKKLR  171 (454)
T ss_pred             HHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHh-hHHHHHHHH
Confidence            33445555444 3577889999999999999999999999999999999999998888888887665542 456666666


Q ss_pred             hcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHH
Q 020431           97 SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM  176 (326)
Q Consensus        97 ~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l  176 (326)
                      .  .+.|||++||+|.+.+|+++|+|||||||+|+++|.+|+|+++.+|||||||||+|||++|+|+++++|||+||.||
T Consensus       172 ~--~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~el  249 (454)
T PRK09034        172 D--RDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMREL  249 (454)
T ss_pred             h--cCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHH
Confidence            5  66799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCccc
Q 020431          177 SYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPG  256 (326)
Q Consensus       177 ~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~  256 (326)
                      +++|+++|||+|+.||++++||++|+|+++|+.+||+|.......      ....+++|+..+|+++|++.|.+|.+.+|
T Consensus       250 a~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~~~GT~I~~~~~~~------~~~~Vk~It~~~~i~~Itv~~~~~~~~~g  323 (454)
T PRK09034        250 SYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVPDRDNK------NKNPITGIAGDKGFTSIYISKYLMNREVG  323 (454)
T ss_pred             HhCCcccCCHHHHHHHHHcCCCEEEEcCCCCCCCccEEEeccccC------ccccceEEEecCCEEEEEEccCCCCCCcc
Confidence            999999999999999999999999999999998999997642211      12469999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHH-HHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVA-EALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       257 i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av-~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      +++++|+.|+++||+|+|++  +|+.++||++++.+..++. +.+..+|..++   ....+.++.++|+|+
T Consensus       324 ~~a~if~~la~~~I~Vd~i~--ss~~sis~~v~~~~~~~a~~~~l~~el~~~~---~~~~I~~~~~va~Vs  389 (454)
T PRK09034        324 FGRKVLQILEDHGISYEHMP--SGIDDLSIIIRERQLTPKKEDEILAEIKQEL---NPDELEIEHDLAIIM  389 (454)
T ss_pred             HHHHHHHHHHHcCCeEEEEc--CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhh---CCceEEEeCCEEEEE
Confidence            99999999999999999997  7899999999999887765 66666665554   356799999999874

>PRK06291 aspartate kinase; Provisional

Probab=100.00  E-value=4.9e-57  Score=448.43  Aligned_cols=299  Identities=40%  Similarity=0.614  Sum_probs=270.3

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCC---ch
Q 020431           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---FS   86 (326)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~---~~   86 (326)
                      .++..++.|++++.     ++.+++.+|+++|+||+||+++++.+|+++|++|.++++++++++++++++...++   +.
T Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~  175 (465)
T PRK06291         96 TIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYE  175 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHH
Confidence            46667788888776     36788999999999999999999999999999999999999988888777765443   33


Q ss_pred             hhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEe
Q 020431           87 ESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR  166 (326)
Q Consensus        87 ~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~  166 (326)
                      ...+.++.+++  .+.|||++||+|.+++|.++|+||||||++|+++|.+|+|+++++||||||||++||+++|+|++++
T Consensus       176 ~~~~~~~~ll~--~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~  253 (465)
T PRK06291        176 RVKERLEPLLK--EGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIP  253 (465)
T ss_pred             HHHHHHHHHhh--cCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEcc
Confidence            44456677776  7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEE
Q 020431          167 TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV  246 (326)
Q Consensus       167 ~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~Isi  246 (326)
                      +++|+||.+++++|++++||+|+.+|+++|||++|.|+++|+.+||+|..... .      ....+++|+..+|+++|++
T Consensus       254 ~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~-~------~~~~V~~It~~~~valIsI  326 (465)
T PRK06291        254 KISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSE-S------SKRVVKAVTLIKNVALINI  326 (465)
T ss_pred             ccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCCCCceEEEeccc-c------cCcccceEEeeCCEEEEEE
Confidence            99999999999999999999999999999999999999999999999976422 1      1246999999999999999


Q ss_pred             ecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       247 vG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      +|.+|.+.+|+++++|+.|+++||+|+||+|++|+.+++|+|++++.+++++.||+.|...    ..+.++++.++++|+
T Consensus       327 ~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~av~~L~~~~~~~----~~~~i~~~~~~a~Is  402 (465)
T PRK06291        327 SGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEKALKALRREFGEG----LVRDVTFDKDVCVVA  402 (465)
T ss_pred             eCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHHHHHHHHHHHHHh----cCcceEEeCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999988754    367899999999873

>PRK09084 aspartate kinase III; Validated

Probab=100.00  E-value=9.9e-57  Score=443.78  Aligned_cols=299  Identities=28%  Similarity=0.465  Sum_probs=264.1

Q ss_pred             HHHHHHHHHHHhhhcC---CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHH
Q 020431           14 EFIRSTYNFLSNVDSG---HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (326)
Q Consensus        14 ~~i~~~~~~l~~~~~~---~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~   90 (326)
                      +.++..++.|++++++   +.+++.+|.++|+||+||+++++.+|+++|++|.+++++++ +.+++.+++..+++..+..
T Consensus        84 ~~i~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~-i~t~~~~~~~~~~~~~~~~  162 (448)
T PRK09084         84 EEIERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGRAEPDVAALAE  162 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHe-EEecCCCCcccccHHHHHH
Confidence            4577889999999876   47889999999999999999999999999999999999999 4566677777787766655


Q ss_pred             HHHHHhhc--CCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeee
Q 020431           91 RLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (326)
Q Consensus        91 ~i~~~l~~--~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~l  168 (326)
                      .+.+.+..  ..+ |||++||+|.+.+|.++|+||||||++|+++|.+|+|+++++|||||||||+|||++|+|+++++|
T Consensus       163 ~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~i  241 (448)
T PRK09084        163 LAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEI  241 (448)
T ss_pred             HHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccC
Confidence            55544432  145 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEec
Q 020431          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEG  248 (326)
Q Consensus       169 s~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG  248 (326)
                      +|+||.||+++|++++||+++.++++++||++|+|+++|+.+||+|.....        ....+++|+..+|+++|++.|
T Consensus       242 s~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~--------~~~~v~~it~~~~i~lItv~~  313 (448)
T PRK09084        242 SFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTE--------NPPLFRAIALRRNQTLLTLHS  313 (448)
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCC--------CCCeeEEEEeeCCEEEEEEec
Confidence            999999999999999999999999999999999999999989999976421        123699999999999999999


Q ss_pred             CCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccH-HHHHHHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          249 TGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV-KAVAEALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       249 ~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~-~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      .+|.+.+|+++++|+.|++++|+|+||+  +|+.+|||++++++. .++...+.+++..++.  .+.+++++.++++|+
T Consensus       314 ~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse~sIs~~i~~~~~~~~~~~~~~~~l~~el~--~~~~i~~~~~va~Is  388 (448)
T PRK09084        314 LNMLHARGFLAEVFGILARHKISVDLIT--TSEVSVSLTLDTTGSTSTGDTLLTQALLTELS--QLCRVEVEEGLALVA  388 (448)
T ss_pred             CCCCccccHHHHHHHHHHHcCCeEEEEe--ccCcEEEEEEechhhhhhhhHHHHHHHHHHHh--cCCeEEEECCeEEEE
Confidence            9999999999999999999999999999  468999999999874 4455556666665654  478899999999874

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=100.00  E-value=1.3e-56  Score=469.89  Aligned_cols=304  Identities=39%  Similarity=0.634  Sum_probs=280.3

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhh
Q 020431           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (326)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~   88 (326)
                      ++|+..|+.|+++++     ++.+++.+|+++|+||+||+++++.+|+++|++|.+++++++++ +++.+++..+++..+
T Consensus        92 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~-t~~~~~~~~~~~~~~  170 (819)
T PRK09436         92 AKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLL-ADGHYLESTVDIAES  170 (819)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEE-ecCCCCCceechHhh
Confidence            457777888888776     47789999999999999999999999999999999999999854 566777777887778


Q ss_pred             HHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeee
Q 020431           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (326)
Q Consensus        89 ~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~l  168 (326)
                      ++.+++++.. .+.|||++||+|.+.+|+++|+||||||++|+++|.+++|+.+++|||||||||+||+.+|+|++++++
T Consensus       171 ~~~i~~~~~~-~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~i  249 (819)
T PRK09436        171 TRRIAASFIP-ADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSL  249 (819)
T ss_pred             HHHHHHHHhc-CCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEe
Confidence            8888888752 478999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEec
Q 020431          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEG  248 (326)
Q Consensus       169 s~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG  248 (326)
                      +|+|+.+++++|++++||+|+.+|+++|||++|+|+++|+.+||+|+.... +      ....+++|+.++|+++|+++|
T Consensus       250 sy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~-~------~~~~Vk~It~~~dvalIsV~G  322 (819)
T PRK09436        250 SYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESD-E------DSLPVKGISNLNNMAMFNVSG  322 (819)
T ss_pred             cHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCCCCceEEEecCc-c------cccccceEEEeCCEEEEEEEc
Confidence            999999999999999999999999999999999999999999999976421 1      235699999999999999999


Q ss_pred             CCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          249 TGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       249 ~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      .+|...+|+++++|+.|+++||+|+|++|++|+.+|||+|++++.+++++.||++|..++....++++++.+++++|+
T Consensus       323 ~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~~~~valIs  400 (819)
T PRK09436        323 PGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENLAIIS  400 (819)
T ss_pred             CCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999998888888899999999999874

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=100.00  E-value=9.8e-56  Score=460.72  Aligned_cols=295  Identities=27%  Similarity=0.407  Sum_probs=264.3

Q ss_pred             HHHHHHHHHHhhhcCCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHH
Q 020431           15 FIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEK   94 (326)
Q Consensus        15 ~i~~~~~~l~~~~~~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~   94 (326)
                      .++..++.|++++.++++++.+|+++|+||+||+++++.+|+++|+++.++++++++. +++. +...++...+++++++
T Consensus       101 ~i~~~~~~l~~~l~~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~-~~~~-~~~~i~~~~~~~~l~~  178 (810)
T PRK09466        101 RLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLR-AERA-AQPQVDEGLSYPLLQQ  178 (810)
T ss_pred             HHHHHHHHHHHHhhccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHhee-cCCC-CCcccchhhhHHHHHH
Confidence            3667788999999899999999999999999999999999999999999999999844 4333 2345666667788988


Q ss_pred             HhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHH
Q 020431           95 WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW  174 (326)
Q Consensus        95 ~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~  174 (326)
                      ++....+.|||++||+|.+.+|+++|+|||||||+|+++|.+|+|++++||||||||||+|||++|+|+++++|||+||.
T Consensus       179 ~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~  258 (810)
T PRK09466        179 LLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEAS  258 (810)
T ss_pred             HHhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHH
Confidence            88744558999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCc
Q 020431          175 EMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGV  254 (326)
Q Consensus       175 ~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~  254 (326)
                      ||+++|++|+||+|++|++++|||++|+|+++|+.+||+|.....        ....++.|+..+|+++|++.+.++.+.
T Consensus       259 ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~--------~~~~v~~It~~~~v~~i~i~~~~~~g~  330 (810)
T PRK09466        259 ELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA--------SGTGARIVTSLDDVCLIELQVPASHDF  330 (810)
T ss_pred             HHHHcCccccCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc--------cccceeeeeccCCEEEEEEecCCcCCc
Confidence            999999999999999999999999999999999999999975311        123578999999999999999888889


Q ss_pred             ccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          255 PGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       255 ~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      +|+.+++|+.|++++|+++||+|++++.+++|.++..+.+++.+.|++..       ..++++++.++|+|+
T Consensus       331 ~g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~~~~~~~~~~~l~~~~-------~~~~i~v~~~~a~Vs  395 (810)
T PRK09466        331 KLAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYTSEVADSALKLLDDAA-------LPGELKLREGLALVA  395 (810)
T ss_pred             chHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEeHHHHHHHHHHHHhhc-------CCCcEEEeCCeEEEE
Confidence            99999999999999999999999999999999999888888888887742       127899999999874

>PRK09181 aspartate kinase; Validated

Probab=100.00  E-value=8.1e-54  Score=423.84  Aligned_cols=282  Identities=20%  Similarity=0.279  Sum_probs=240.8

Q ss_pred             HHHHHHHHHhhhc------CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhH
Q 020431           16 IRSTYNFLSNVDS------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE   89 (326)
Q Consensus        16 i~~~~~~l~~~~~------~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~   89 (326)
                      ++..++.+.+++.      ++++++.+|.++|+||+||+++|+.+|+++|++|.++++..+.. ++        ++ .+.
T Consensus       113 ~~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~-~~--------~~-~~~  182 (475)
T PRK09181        113 ARACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDD-DD--------PL-TLD  182 (475)
T ss_pred             HHHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccC-Cc--------cc-chH
Confidence            4666777777654      57899999999999999999999999999999999998865532 11        11 134


Q ss_pred             HHHHHHhhc--CCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCC--CCCeEE
Q 020431           90 KRLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVIL  165 (326)
Q Consensus        90 ~~i~~~l~~--~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~--~~a~~i  165 (326)
                      +++++.++.  ..+.|||++||+ .+.+|+++|||||||||+|+++|.+|+|+++.+||||+ |||+|||++  |+|+++
T Consensus       183 ~~i~~~l~~~~~~~~v~Vv~GF~-~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i  260 (475)
T PRK09181        183 ERIKKAFKDIDVTKELPIVTGYA-KCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPI  260 (475)
T ss_pred             HHHHHHHhhhccCCcEEEecCCc-CCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEc
Confidence            667766652  246899999996 57789999999999999999999999999999999996 999999999  699999


Q ss_pred             eeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEE
Q 020431          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVN  245 (326)
Q Consensus       166 ~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~Is  245 (326)
                      ++|||+||.||+++|++|+||+|++||++++||++|+|+++|+.+||+|..... .      ....+++|+..+|+++|+
T Consensus       261 ~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~nt~~p~~~GT~I~~~~~-~------~~~~ik~It~~~~~~~i~  333 (475)
T PRK09181        261 GRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEHPGTLITKDYV-S------EQPRVEIIAGSDKVFALE  333 (475)
T ss_pred             CccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCCCCCeEEecCcc-c------ccccceeEeccCCEEEEE
Confidence            999999999999999999999999999999999999999999999999976421 1      124589999999999999


Q ss_pred             EecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccc-c-HHHHHHHHHHHHHHHhcCCCCcceEEEcCee
Q 020431          246 VEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEK-E-VKAVAEALESKFREALNAGRLSQVCLSFWLC  323 (326)
Q Consensus       246 ivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~-d-~~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~  323 (326)
                      +.|.+|...+|+.+++|+.|++++|+|+|++  +|+.++||+++.+ + ..++++.|+++|.       .+++++ ++++
T Consensus       334 i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~--ss~~sis~~v~~~~~~~~~~~~~L~~~~~-------~~~i~~-~~~a  403 (475)
T PRK09181        334 VFDQDMVGEDGYDLEILEILTRHKVSYISKA--TNANTITHYLWGSLKTLKRVIAELEKRYP-------NAEVTV-RKVA  403 (475)
T ss_pred             EcCCCCCCcchHHHHHHHHHHHcCCeEEEEE--ecCcEEEEEEcCChHHHHHHHHHHHHhcC-------CceEEE-CCce
Confidence            9999999999999999999999999999998  5689999999988 3 5667777776542       235664 8888


Q ss_pred             ecC
Q 020431          324 DYT  326 (326)
Q Consensus       324 ~~~  326 (326)
                      +|+
T Consensus       404 ~Vs  406 (475)
T PRK09181        404 IVS  406 (475)
T ss_pred             EEE
Confidence            763

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=100.00  E-value=5.6e-53  Score=412.73  Aligned_cols=282  Identities=35%  Similarity=0.533  Sum_probs=256.9

Q ss_pred             CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCc
Q 020431           30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (326)
Q Consensus        30 ~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gf  109 (326)
                      ..++..+|.++++||++|+++++++|+++|+++.++++.+..+++++++++..+....+++.+.++++  .+.|||++||
T Consensus        60 ~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVi~g~  137 (401)
T TIGR00656        60 AITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLE--EGIIVVVAGF  137 (401)
T ss_pred             CCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceEeeecchHHHHHHHHh--CCCEEEecCc
Confidence            34677789999999999999999999999999999999998888877776555555555588899988  8899999999


Q ss_pred             cccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhH
Q 020431          110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (326)
Q Consensus       110 i~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~  189 (326)
                      +|.+.+|.++++||||||++|+.+|.+|+|+++++||||||||++||+++|+|+++++++|+||.+|+++|++++||+|+
T Consensus       138 ~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~  217 (401)
T TIGR00656       138 QGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTV  217 (401)
T ss_pred             ceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCC
Q 020431          190 IPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVG  269 (326)
Q Consensus       190 ~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~  269 (326)
                      ++|++++||++|.|+++|+ +||+|.++..        ....+++|+.++|+++|+++|.+|.+.+|+++++|+.|++++
T Consensus       218 ~~a~~~~i~i~i~~~~~~~-~gT~I~~~~~--------~~~~v~~I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~  288 (401)
T TIGR00656       218 EPAMRSGVPIEVRSSFDPE-EGTLITNSME--------NPPLVKGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERN  288 (401)
T ss_pred             HHHHHCCCeEEEEECCCCC-CCeEEEeCcc--------cCCceEEEEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcC
Confidence            9999999999999999988 8999976421        123699999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          270 ANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       270 I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      |+++|++|+.|+.+++|+|++++.+++++.||+.|...    .+..++++.++++|+
T Consensus       289 I~i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~~~----~~~~i~~~~~~a~Is  341 (401)
T TIGR00656       289 INVDLISQTPSETSISLTVDETDADEAVRALKDQSGAA----GLDRVEVEEGLAKVS  341 (401)
T ss_pred             CcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHhc----CCceEEEeCCeEEEE
Confidence            99999999889999999999999999999999976332    267789999988763

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK05925 aspartate kinase; Provisional

Probab=100.00  E-value=2.4e-52  Score=410.19  Aligned_cols=292  Identities=23%  Similarity=0.379  Sum_probs=249.6

Q ss_pred             HHHHHHHhhh-cCCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHh
Q 020431           18 STYNFLSNVD-SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF   96 (326)
Q Consensus        18 ~~~~~l~~~~-~~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l   96 (326)
                      ..++.|++++ .++.+++.+|+++|+||+||+++++.+|+++|++|.+++++++ +.++++|++..++...+.+.+.+..
T Consensus        83 ~~~~~L~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~~~~~~~~~~~~~~~  161 (440)
T PRK05925         83 PWWERLEHFEDVEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAVPDLALMQTAWHELA  161 (440)
T ss_pred             HHHHHHHHHHHhCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHh-EeecCCccccccCHHHHHHHHHHhh
Confidence            3445566665 3677889999999999999999999999999999999999998 5566677777788766766666544


Q ss_pred             hcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHH
Q 020431           97 SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM  176 (326)
Q Consensus        97 ~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l  176 (326)
                      . ..+.|||++||+|.+.+|+++|+||||||++|+++|.+++|+.+++|||||||||+||+++|+|+++++++|+|+.++
T Consensus       162 ~-~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~el  240 (440)
T PRK05925        162 L-QEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNL  240 (440)
T ss_pred             c-cCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHH
Confidence            3 256899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCccc
Q 020431          177 SYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPG  256 (326)
Q Consensus       177 ~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~  256 (326)
                      +++|++++||+++++|+++|||++|.|+++|+.+||+|.+.....     .....+++|+.++|+++|++.+..  ..++
T Consensus       241 a~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~~~GT~i~~~~~~~-----~~~~~ik~It~~~~~~~i~v~~~~--~~~~  313 (440)
T PRK05925        241 ASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYASDKEV-----SYEPRIKALSLKQNQALWSVDYNS--LGLV  313 (440)
T ss_pred             HhCCCCcCCHHHHHHHHHCCCcEEEecCCCCCCCccEEecCCccc-----cCCCceEEEEEeCCEEEEEEecCC--cchh
Confidence            999999999999999999999999999999999999997642111     023469999999999999997643  3578


Q ss_pred             HHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccH-HHHHHHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV-KAVAEALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       257 i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~-~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      +++++|+.|+++||++++++  +++.++||++++++. ..+++.|..+    +  ..+.+++++.++++|+
T Consensus       314 ~~~~if~~l~~~~I~vd~i~--s~~~sis~~i~~~~~~~~~~~~l~~~----l--~~~~~i~~~~~~a~Vs  376 (440)
T PRK05925        314 RLEDVLGILRSLGIVPGLVM--AQNLGVYFTIDDDDISEEYPQHLTDA----L--SAFGTVSCEGPLALIT  376 (440)
T ss_pred             HHHHHHHHHHHcCCcEEEEe--ccCCEEEEEEechhccHHHHHHHHHH----h--cCCceEEEECCEEEEE
Confidence            89999999999999999986  447899999999875 3355555443    2  2467899999999874

>TIGR00657 asp_kinases aspartate kinase

Probab=100.00  E-value=2.3e-52  Score=412.93  Aligned_cols=282  Identities=35%  Similarity=0.531  Sum_probs=253.7

Q ss_pred             ChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccc
Q 020431           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (326)
Q Consensus        32 ~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~  111 (326)
                      +++.+|.++|+||+||+++++++|+++|++++++++.+.++++++++++..+......+.++++++  .+.|||++||+|
T Consensus       101 ~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVv~G~~g  178 (441)
T TIGR00657       101 KPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLE--EGIIPVVAGFQG  178 (441)
T ss_pred             CcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHh--cCCEEEEeCcEe
Confidence            467889999999999999999999999999999999999888877776543234445688999988  789999999999


Q ss_pred             cCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHH
Q 020431          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (326)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~  191 (326)
                      .+.+|+++++||||||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|+++|++++||+|+++
T Consensus       179 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~  258 (441)
T TIGR00657       179 ATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEP  258 (441)
T ss_pred             eCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCc
Q 020431          192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN  271 (326)
Q Consensus       192 a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~  271 (326)
                      +++++||++|.|+++|+.+||+|.+.....      ....+++|+..+++++|++.|.+|.. +|+++++|+.|+++||+
T Consensus       259 ~~~~~i~i~i~~~~~~~~~GT~I~~~~~~~------~~~~i~~It~~~~v~~Isv~g~~~~~-~g~la~if~~L~~~~I~  331 (441)
T TIGR00657       259 AMRAKIPIVVKSTFNPEAPGTLIVASTKEM------EEPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGIN  331 (441)
T ss_pred             HHHcCCeEEEecCCCCCCCceEEEeCCCcc------ccCccceEEEeCCEEEEEEECCCCCC-ccHHHHHHHHHHHcCCe
Confidence            999999999999999988999998643211      22468999999999999999999998 99999999999999999


Q ss_pred             EEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          272 VIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       272 v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      |++++|++|+.+|+|++++++.+++.+.|..    ......+..+.++.++++++
T Consensus       332 I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~----~~~~~~~~~I~~~~~~a~Vs  382 (441)
T TIGR00657       332 VDLITQSSSETSISFTVDKEDADQAKTLLKS----ELNLSALSSVEVEKGLAKVS  382 (441)
T ss_pred             EEEEEecCCCceEEEEEEHHHHHHHHHHHHH----HHHhcCcceEEEcCCeEEEE
Confidence            9999999999999999999999988887744    22345577899999998874

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-53  Score=397.27  Aligned_cols=298  Identities=27%  Similarity=0.399  Sum_probs=249.9

Q ss_pred             hhHHHHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCc
Q 020431           11 LSYEFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF   85 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~   85 (326)
                      +|...+..+.+.|+++++     +|.+++.+|+++|+||.||+|.|+++|+..|++|..+|+.+++.++-+.+...+..+
T Consensus       162 ~d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~  241 (559)
T KOG0456|consen  162 VDPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILE  241 (559)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHH
Confidence            456677788888999887     599999999999999999999999999999999999999999777644443222211


Q ss_pred             hhhHHHHHHHhh-c--CCCcEEEecCccc-cCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCC
Q 020431           86 SESEKRLEKWFS-Q--SPSNTIIATGFIA-STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE  161 (326)
Q Consensus        86 ~~~~~~i~~~l~-~--~~~~ipVv~Gfi~-~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~  161 (326)
                       ......-+++. .  ..+.|||++||.| ....|-.+++||||+|.+|+.+|.+||++++.+|+|||||+|+||+++|.
T Consensus       242 -a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~  320 (559)
T KOG0456|consen  242 -ATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPG  320 (559)
T ss_pred             -HHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCC
Confidence             11111122222 2  3568999999999 66889999999999999999999999999999999999999999999999


Q ss_pred             CeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCC--------------------C
Q 020431          162 AVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVD--------------------E  221 (326)
Q Consensus       162 a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~--------------------~  221 (326)
                      |++++.+|++||.||+|+|+.|+||-++.++.+.+||++|.|..+|.++||.|.++.+-                    .
T Consensus       321 Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~~~GTvI~~d~~m~k~~~TsI~lK~nv~mldI~S  400 (559)
T KOG0456|consen  321 ARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPTAPGTVITPDRDMSKAGLTSIVLKRNVTMLDIAS  400 (559)
T ss_pred             ccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCCCCceEeccchhhhhccceEEEEeccEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999876320                    0


Q ss_pred             C---------------------------------cc------------hh-------hccCCeeeEEeecCeEEEEEecC
Q 020431          222 N---------------------------------ED------------EQ-------IIDSPVKGFATIDNLALVNVEGT  249 (326)
Q Consensus       222 ~---------------------------------~~------------~~-------~~~~~v~~I~~~~~ia~IsivG~  249 (326)
                      +                                 .+            .|       .+-..+-.+...++.++||++|.
T Consensus       401 tr~l~q~GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~~l~~a~eeL~ki~~vdll~~~sIiSLiGn  480 (559)
T KOG0456|consen  401 TRMLGQHGFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQGELDQAVEELEKIAVVDLLKGRSIISLIGN  480 (559)
T ss_pred             cchhhhhhHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHhhHHHHHHHHHHhhhhhhhccchHHhhhhh
Confidence            0                                 00            00       00111223344568899999998


Q ss_pred             CCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcC
Q 020431          250 GMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNA  310 (326)
Q Consensus       250 ~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~  310 (326)
                       |++..+++.+.|..|++.||||.|||||+|+.+|||+|++++..++++.||++|+..+..
T Consensus       481 -vq~ss~i~~rmF~~l~e~giNvqMISQGAskvNIS~ivne~ea~k~v~~lH~~~~e~~~~  540 (559)
T KOG0456|consen  481 -VQNSSGILERMFCVLAENGINVQMISQGASKVNISCIVNEKEAEKCVQALHKAFFETLDL  540 (559)
T ss_pred             -hhhhhHHHHHHHHHHHhcCcceeeeccccccceEEEEEChHHHHHHHHHHHHHHcCCCCc
Confidence             999999999999999999999999999999999999999999999999999999877533

>PRK08841 aspartate kinase; Validated

Probab=100.00  E-value=2.4e-51  Score=398.56  Aligned_cols=268  Identities=22%  Similarity=0.304  Sum_probs=232.3

Q ss_pred             CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCcc
Q 020431           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (326)
Q Consensus        31 ~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi  110 (326)
                      .+++.+|.++|+||++|+.+++.+|+++|+++.+++++++++++++.++...+... ..+.++++++  .+.|||++||+
T Consensus        61 ~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~~-~~~~i~~ll~--~~~vpVv~Gf~  137 (392)
T PRK08841         61 PTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHI-DTSTITELLE--QDQIVIVAGFQ  137 (392)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceechh-hHHHHHHHHh--CCCEEEEeCCc
Confidence            35677899999999999999999999999999999999987777766654434332 3478888888  78999999999


Q ss_pred             ccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHH
Q 020431          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (326)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~  190 (326)
                      |.+++|+++|+||||||++|+.+|.+|+|+++++||||||||++||+++|+|+++++++|+||.||+++|++++||+|++
T Consensus       138 g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~  217 (392)
T PRK08841        138 GRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQ  217 (392)
T ss_pred             ccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEeccCCCCCceEEeCCCCC---------CC---------cc---------------------------h
Q 020431          191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVD---------EN---------ED---------------------------E  225 (326)
Q Consensus       191 ~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~---------~~---------~~---------------------------~  225 (326)
                      +|+++|||++|.|++++ .+||+|..+...         .+         .+                           .
T Consensus       218 ~a~~~~Ipi~i~n~~~~-~~GT~I~~~~~~~~i~~i~~~~~~~~i~v~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~~~v  296 (392)
T PRK08841        218 HAWKHSVPLRVLSSFEV-GEGTLIKGEAGTQAVCGIALQRDLALIEVESESLPSLTKQCQMLGIEVWNVIEEADRAQIVI  296 (392)
T ss_pred             HHHHCCCeEEEEecCCC-CCCeEEEeccCCCcEEEEEEeCCeEEEEeccchHHHHHHHHHHcCCCEEEEEecCCcEEEEE
Confidence            99999999999999986 579999643210         00         00                           0


Q ss_pred             -----h-hccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHH
Q 020431          226 -----Q-IIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEA  299 (326)
Q Consensus       226 -----~-~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~  299 (326)
                           . ........+...+|+++|+++|.++   ||+.+++|++|++++||+.+++  +|+.+|||+|+++|.+++++.
T Consensus       297 ~~~~~~~~~~~~~~~i~~~~~~a~vsvVG~~~---~gv~~~~~~aL~~~~I~i~~i~--~s~~~is~vv~~~~~~~av~~  371 (392)
T PRK08841        297 KQDACAKLKLVFDDKIRNSESVSLLTLVGLEA---NGMVEHACNLLAQNGIDVRQCS--TEPQSSMLVLDPANVDRAANI  371 (392)
T ss_pred             CHHHHHHHHHhCcccEEEeCCEEEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEE--CCCcEEEEEEeHHHHHHHHHH
Confidence                 0 0011122477778999999999874   9999999999999999999998  578999999999999999999


Q ss_pred             HHHHHHHH
Q 020431          300 LESKFREA  307 (326)
Q Consensus       300 Lh~~f~~~  307 (326)
                      ||++|+..
T Consensus       372 lH~~f~~~  379 (392)
T PRK08841        372 LHKTYVTS  379 (392)
T ss_pred             HHHHHcCC
Confidence            99999765

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=100.00  E-value=6.9e-49  Score=415.01  Aligned_cols=295  Identities=32%  Similarity=0.450  Sum_probs=252.6

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCC-------CCC
Q 020431           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVD   82 (326)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g-------~~~   82 (326)
                      .++..++.|+++++     ++.+++.+|.++|+||+||+.+++.+|+++|+++.+++++++++++++.++       +..
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~  172 (861)
T PRK08961         93 VLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVS  172 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccce
Confidence            56677888888874     577899999999999999999999999999999999999999766652211       111


Q ss_pred             CCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCC
Q 020431           83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (326)
Q Consensus        83 ~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a  162 (326)
                      ++.......++.+++ ..+.|||++||+|.+.+|.++|+||||||++|+++|.+|+|+++++|||||||||+||+++|+|
T Consensus       173 ~~~~~~~~~~~~~~~-~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a  251 (861)
T PRK08961        173 CQWQSDPALRERFAA-QPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDA  251 (861)
T ss_pred             ecHhhHHHHHHHHhc-cCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCc
Confidence            212112234444443 2346999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeE
Q 020431          163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLA  242 (326)
Q Consensus       163 ~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia  242 (326)
                      ++++++||+|+.+|++.|++++||+|+++|+++|||++|.|+++|+.+||+|..+..        ....+++|+.++|++
T Consensus       252 ~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~~--------~~~~v~~It~~~~v~  323 (861)
T PRK08961        252 RLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSGTSIDGDAE--------PVPGVKAISRKNGIV  323 (861)
T ss_pred             eEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCCC--------CCCcceeEEEECCEE
Confidence            999999999999999999999999999999999999999999999889999976421        234699999999999


Q ss_pred             EEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHH---HHHHHHHHHHHHHhcCCCCcceEEE
Q 020431          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK---AVAEALESKFREALNAGRLSQVCLS  319 (326)
Q Consensus       243 ~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~---~av~~Lh~~f~~~~~~~~~~~v~~~  319 (326)
                      +|++.+.+|.+.+|+++++|+.|++++|+|+||+  +|+.++||++++.+..   ++++.+.+++.      .++.+.++
T Consensus       324 lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~--sse~sis~~i~~~~~~~~~~~~~~l~~~l~------~~~~i~~~  395 (861)
T PRK08961        324 LVSMETIGMWQQVGFLADVFTLFKKHGLSVDLIS--SSETNVTVSLDPSENLVNTDVLAALSADLS------QICRVKII  395 (861)
T ss_pred             EEEEecCCccccccHHHHHHHHHHHcCCeEEEEE--cCCCEEEEEEccccccchHHHHHHHHHHHh------hcCcEEEe
Confidence            9999999999999999999999999999999998  5789999999998753   56666665542      36779999


Q ss_pred             cCeeecC
Q 020431          320 FWLCDYT  326 (326)
Q Consensus       320 ~~~~~~~  326 (326)
                      +++|+|+
T Consensus       396 ~~va~IS  402 (861)
T PRK08961        396 VPCAAVS  402 (861)
T ss_pred             CCeEEEE
Confidence            9999874

>PRK06635 aspartate kinase; Reviewed

Probab=100.00  E-value=4.1e-48  Score=378.75  Aligned_cols=280  Identities=30%  Similarity=0.470  Sum_probs=246.9

Q ss_pred             ChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccc
Q 020431           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (326)
Q Consensus        32 ~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~  111 (326)
                      ++..++.++++||++|+++++.+|+++|+++.++++.+++++++.+++..++. ....+.++++++  .+.|||++||+|
T Consensus        62 ~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~--~~~ipVi~g~~~  138 (404)
T PRK06635         62 DPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARIT-DIDPSRIREALD--EGDVVVVAGFQG  138 (404)
T ss_pred             CHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEee-ecCHHHHHHHHh--CCCEEEecCccE
Confidence            56778999999999999999999999999999999999977776666543321 112478888988  789999999999


Q ss_pred             cCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHH
Q 020431          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (326)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~  191 (326)
                      .+++|+++++||||||++|+++|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++++.|++++||+|+++
T Consensus       139 ~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~  218 (404)
T PRK06635        139 VDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEY  218 (404)
T ss_pred             eCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCc
Q 020431          192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN  271 (326)
Q Consensus       192 a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~  271 (326)
                      ++++|+|++|.|++++ ..||.|......     ......+++|+..+++++|+++|  |.+.+|+++++|++|+++||+
T Consensus       219 ~~~~~i~~~i~~~~~~-~~gT~i~~~~~~-----~~~~~~i~~I~~~~~v~~Isv~g--~~~~~g~l~~i~~~L~~~~I~  290 (404)
T PRK06635        219 AKKYNVPLRVRSSFSD-NPGTLITGEEEE-----IMEQPVVTGIAFDKDEAKVTVVG--VPDKPGIAAQIFGALAEANIN  290 (404)
T ss_pred             HHHcCceEEEEcCCCC-CCCCEEeeCCcc-----ccccCceEEEEecCCeEEEEECC--CCCCccHHHHHHHHHHHcCCe
Confidence            9999999999999986 579999764320     01235689999999999999998  889999999999999999999


Q ss_pred             EEEEEecCCc---cEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          272 VIMISQASSE---HSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       272 v~~Isq~~se---~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      +++++|+.++   .+++|++++++.+++++.||+ +..+.   .+..+++..++++++
T Consensus       291 i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~-~~~~~---~~~~i~~~~~ia~is  344 (404)
T PRK06635        291 VDMIVQNVSEDGKTDITFTVPRDDLEKALELLEE-VKDEI---GAESVTYDDDIAKVS  344 (404)
T ss_pred             EEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHH-HHHHc---CcceEEEcCCeEEEE
Confidence            9999998766   899999999999999999998 43333   255688888888763

>PRK08210 aspartate kinase I; Reviewed

Probab=100.00  E-value=2.8e-47  Score=372.75  Aligned_cols=278  Identities=26%  Similarity=0.407  Sum_probs=239.2

Q ss_pred             CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCc
Q 020431           30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (326)
Q Consensus        30 ~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gf  109 (326)
                      ..+++.+|.++++||++|+++++++|+++|+++.++++.+..+++++.++...+... ..+.++++++  .+.|||++||
T Consensus        65 ~~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~-~~~~l~~~l~--~~~vpVi~G~  141 (403)
T PRK08210         65 EISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEV-NPDRILEALE--EGDVVVVAGF  141 (403)
T ss_pred             CCChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehh-hHHHHHHHHh--cCCEEEeeCe
Confidence            346778899999999999999999999999999999999987777766543323221 2378888887  7899999999


Q ss_pred             cccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhH
Q 020431          110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (326)
Q Consensus       110 i~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~  189 (326)
                      +|.+++|+++|+||||||++|+.+|.+|+|++++|||||||||++||+.+|+++++++|+|+|+.+++++|++++||+|+
T Consensus       142 ~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~  221 (403)
T PRK08210        142 QGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAV  221 (403)
T ss_pred             eecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCC
Q 020431          190 IPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVG  269 (326)
Q Consensus       190 ~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~  269 (326)
                      ++|++++||++|+|++++ .+||+|.++....... +.....+++|+..+|+++|++.+..+  .+|+++++|+.|+++|
T Consensus       222 ~~~~~~~i~i~i~~~~~~-~~gT~I~~~~~~~~~~-~~~~~~v~~It~~~~i~~isv~~~~~--~~g~la~If~~L~~~~  297 (403)
T PRK08210        222 EIAMQANIPLRIRSTYSD-SPGTLITSLGDAKGGI-DVEERLITGIAHVSNVTQIKVKAKEN--AYDLQQEVFKALAEAG  297 (403)
T ss_pred             HHHHHCCCeEEEEecCCC-cCCcEEEecCcccccc-ccccCceEEEEEcCCcEEEEEecCCC--cchHHHHHHHHHHHcC
Confidence            999999999999999984 4699998653211000 01235799999999999999987654  3999999999999999


Q ss_pred             CcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceEEEcCeeec
Q 020431          270 ANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDY  325 (326)
Q Consensus       270 I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~  325 (326)
                      |+|++++|+  ..+++|+++.++.+++.+.|++.         ..++.+++++++|
T Consensus       298 I~i~~i~~~--~~~is~~v~~~~~~~a~~~l~~~---------~~~v~~~~~~a~i  342 (403)
T PRK08210        298 ISVDFINIF--PTEVVFTVSDEDSEKAKEILENL---------GLKPSVRENCAKV  342 (403)
T ss_pred             CeEEEEEec--CceEEEEEcHHHHHHHHHHHHHh---------CCcEEEeCCcEEE
Confidence            999999986  34799999999999888777762         1268888888876

>PRK07431 aspartate kinase; Provisional

Probab=100.00  E-value=4.1e-46  Score=380.26  Aligned_cols=288  Identities=27%  Similarity=0.419  Sum_probs=244.3

Q ss_pred             CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecC
Q 020431           29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG  108 (326)
Q Consensus        29 ~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~G  108 (326)
                      .+.+....|.++++||++|+.+++.+|+++|++++++++.++++++++.+|..++... ..+.++++++  .+.|||++|
T Consensus        59 ~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~~-~~~~l~~~l~--~g~vpVv~g  135 (587)
T PRK07431         59 SNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEI-KTDRIQRHLD--AGKVVVVAG  135 (587)
T ss_pred             cCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeeec-cHHHHHHHHh--CCCeEEecC
Confidence            3456678899999999999999999999999999999999998887766554322221 2268888888  789999999


Q ss_pred             ccccCCC--CCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccch
Q 020431          109 FIASTPD--NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP  186 (326)
Q Consensus       109 fi~~~~~--g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~  186 (326)
                      |+|.+.+  |+++|+||||||++|+++|.+|+|+++++||||||||++||+++|+|+++++++|+|+.+|+++|+++|||
T Consensus       136 ~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~  215 (587)
T PRK07431        136 FQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHP  215 (587)
T ss_pred             CcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhH
Confidence            9987644  88999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcch-hhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHH
Q 020431          187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDE-QIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV  265 (326)
Q Consensus       187 ~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~-~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L  265 (326)
                      +|+++++++|||++|+|++. +..||+|.+......... ......+++++..+|++++++.  ++.+.+|+++++|+.|
T Consensus       216 ~a~~~~~~~~i~i~i~~~~~-~~~GT~i~~~~~~~~~~~~~~~~~~i~gi~~~~~~a~itl~--~~~~~~g~~a~if~~l  292 (587)
T PRK07431        216 RAVEIARNYGVPLVVRSSWS-DAPGTLVTSPPPRPRSLGGLELGKPVDGVELDEDQAKVALL--RVPDRPGIAAQLFEEL  292 (587)
T ss_pred             HHHHHHHHcCCcEEEecCCC-CCCCeEEEeCCcccccccchhcccccceEEEecCceEEEEe--cCCCcccHHHHHHHHH
Confidence            99999999999999999984 558999976432110000 0013468999999999999997  5888999999999999


Q ss_pred             HhCCCcEEEEEecCCc---cEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          266 KDVGANVIMISQASSE---HSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       266 ~~~~I~v~~Isq~~se---~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      +++||+|+||+|++++   .+|||++++++..++.+.|.+ +..++..   +++++.+++|+|+
T Consensus       293 ~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~~~~~l~~-l~~~~~~---~~i~~~~~~a~Is  352 (587)
T PRK07431        293 AAQGVNVDLIIQSIHEGNSNDIAFTVAENELKKAEAVAEA-IAPALGG---AEVLVETNVAKLS  352 (587)
T ss_pred             HHcCCcEEEEEeccCCCCCccEEEEEeHHHHHHHHHHHHH-HHHHcCC---CcEEEeCCeEEEE
Confidence            9999999999997654   899999999999988777764 5444433   6799999999874

>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

Probab=100.00  E-value=1.6e-46  Score=350.21  Aligned_cols=196  Identities=28%  Similarity=0.467  Sum_probs=178.1

Q ss_pred             HHHHHHHHHhhhcCCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHH
Q 020431           16 IRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKW   95 (326)
Q Consensus        16 i~~~~~~l~~~~~~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~   95 (326)
                      +...++.+.+++. +.+++.+|.++|+||+||+++++.+|+++|+++.++++++++++++++++...++.. +.+.+.++
T Consensus        93 i~~~~~~l~~~~~-~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~-~~~~~~~~  170 (288)
T cd04245          93 IAEILENLANLDY-ANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPE-SYQKIKKL  170 (288)
T ss_pred             HHHHHHHHHHhhc-cCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchh-hHHHHHHH
Confidence            3344455555443 467889999999999999999999999999999999999998888888877666553 56788888


Q ss_pred             hhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHH
Q 020431           96 FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE  175 (326)
Q Consensus        96 l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~  175 (326)
                      ++  .+.|||++||+|.+.+|+++++|||||||+|+++|.+|+|+++.+|||||||||+|||++|+|+.+++|||+||.+
T Consensus       171 ~~--~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~e  248 (288)
T cd04245         171 RD--SDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRE  248 (288)
T ss_pred             Hh--CCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHH
Confidence            87  6789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEe
Q 020431          176 MSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (326)
Q Consensus       176 l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~  215 (326)
                      |+++|+++|||+|+.+|++++||++|+|+++|+.+||+|.
T Consensus       249 la~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~~~GT~I~  288 (288)
T cd04245         249 LSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLIV  288 (288)
T ss_pred             HHHCCCcccCHHHHHHHHHCCCcEEEeeCCCCCCCCceeC
Confidence            9999999999999999999999999999999999999984

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.

>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

Probab=100.00  E-value=1e-45  Score=346.36  Aligned_cols=200  Identities=49%  Similarity=0.798  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhh
Q 020431           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (326)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~   88 (326)
                      +.|+..++.|++++.     ++.+++.+|.++|+||+||+++++.+|+++|+++.+++++++ +.+++.++...++...+
T Consensus        90 ~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~~~~~~~  168 (294)
T cd04257          90 SALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDGGYLNAVVDIELS  168 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHe-eEecCCCCceEechHhh
Confidence            346677888888776     578899999999999999999999999999999999999997 55666677777877777


Q ss_pred             HHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeee
Q 020431           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (326)
Q Consensus        89 ~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~l  168 (326)
                      .+.+++++... +.|||++||+|.+.+|.++|+||||||++|+++|..++|+++++||||||||++||+.+|+|++++++
T Consensus       169 ~~~l~~~~~~~-~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~i  247 (294)
T cd04257         169 KERIKAWFSSN-GKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSL  247 (294)
T ss_pred             HHHHHHHHhcC-CCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEecee
Confidence            78899888732 78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEe
Q 020431          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (326)
Q Consensus       169 s~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~  215 (326)
                      +|+|+.+++++|++++||+|+++++++|||++|+|+++|+.+||+|+
T Consensus       248 s~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~~~GT~I~  294 (294)
T cd04257         248 SYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLIS  294 (294)
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCCCCCCEeC
Confidence            99999999999999999999999999999999999999999999984

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act

>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=100.00  E-value=1.4e-45  Score=344.47  Aligned_cols=200  Identities=31%  Similarity=0.574  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhH
Q 020431           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE   89 (326)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~   89 (326)
                      .|+..+++|+++++     ++++++.+|.++|+||+||+++++.+|+++|+++.+++++++ +.++++++...++...+.
T Consensus        87 ~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~~~~~~~~  165 (292)
T cd04258          87 KLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGRAAPDLNALA  165 (292)
T ss_pred             HHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHe-EEecCCCccccccHHHHH
Confidence            46778889998885     467889999999999999999999999999999999999999 556677787888887777


Q ss_pred             HHHHHHhhc-CCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeee
Q 020431           90 KRLEKWFSQ-SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (326)
Q Consensus        90 ~~i~~~l~~-~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~l  168 (326)
                      +.+...++. ..+.|||++||+|.+.+|+++|+||||||++|+++|.+++|+++++||||||||++||+++|+|++++.+
T Consensus       166 ~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~i  245 (292)
T cd04258         166 ELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEI  245 (292)
T ss_pred             HHHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEecee
Confidence            777776653 2568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEe
Q 020431          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (326)
Q Consensus       169 s~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~  215 (326)
                      +|+||.+|+++|++++||+|+.++++++||++|+|+++|+.+||+|.
T Consensus       246 sy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~~~GT~I~  292 (292)
T cd04258         246 SFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLIT  292 (292)
T ss_pred             CHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCCceeC
Confidence            99999999999999999999999999999999999999999999984

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.

>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

Probab=100.00  E-value=1.6e-45  Score=344.93  Aligned_cols=200  Identities=43%  Similarity=0.738  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhh
Q 020431           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (326)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~   88 (326)
                      +.|+..++.|+++++     ++++++.+|.++|+||+||+++++.+|+++|++|.++++++++ .+++.++...+++..+
T Consensus        89 ~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i-~t~~~~~~~~~~~~~s  167 (293)
T cd04243          89 AALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELL-LTDDGFLNAVVDLKLS  167 (293)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeE-EecCCCCcchhhhHHH
Confidence            457777888888875     4678999999999999999999999999999999999999984 4555677777777777


Q ss_pred             HHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeee
Q 020431           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (326)
Q Consensus        89 ~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~l  168 (326)
                      ++.++.++..+ +.|||++||+|.+.+|+++|+||||||++|+++|.+++|+++++||||||||++||+++|+|++++++
T Consensus       168 ~~~~~~~~~~~-~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~l  246 (293)
T cd04243         168 KERLAQLLAEH-GKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKEL  246 (293)
T ss_pred             HHHHHHHHhcC-CCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEecee
Confidence            78899888721 78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEe
Q 020431          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (326)
Q Consensus       169 s~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~  215 (326)
                      +|+|+.+++++|++++||+|+++++++|||++|+|+++|+.+||+|+
T Consensus       247 s~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~~~GT~I~  293 (293)
T cd04243         247 SYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLIS  293 (293)
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEeC
Confidence            99999999999999999999999999999999999999999999984

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-

>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

Probab=100.00  E-value=3.7e-45  Score=343.20  Aligned_cols=201  Identities=29%  Similarity=0.512  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCC-chhh
Q 020431           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD-FSES   88 (326)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~-~~~~   88 (326)
                      .++..++.|++++.     ++.+++.+|.++|+||+||+++++.+|+++|+++.++++++++. ++......... ....
T Consensus        99 ~i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~-~~~~~~~~~~~~~~~~  177 (306)
T cd04247          99 EINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVD-LDFSIEALDQTFYDEL  177 (306)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHhee-cCCCccccccchhHHH
Confidence            35667888887765     57889999999999999999999999999999999999999853 43321011111 1222


Q ss_pred             HHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeee
Q 020431           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (326)
Q Consensus        89 ~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~l  168 (326)
                      .+.+.+.+....+.|||++||+|.+.+|+++||||||||++|+++|..|+|+++++|||||||||+||+++|+|+++++|
T Consensus       178 ~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~i  257 (306)
T cd04247         178 AQVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSI  257 (306)
T ss_pred             HHHHHHHhhccCCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEeccc
Confidence            23333334323467999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeC
Q 020431          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR  216 (326)
Q Consensus       169 s~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~  216 (326)
                      +|+||.+|+++|++|+||+|+.||+++|||++|+|+++|+.+||+|.+
T Consensus       258 s~~ea~el~~~GakVlHp~ti~pa~~~~Ipi~i~nt~~P~~~GT~I~~  305 (306)
T cd04247         258 TPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVIYP  305 (306)
T ss_pred             CHHHHHHHHhCcCcccCHHHHHHHHHcCCcEEEecCCCCCCCCcEEcC
Confidence            999999999999999999999999999999999999999999999976

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.

>PRK08373 aspartate kinase; Validated

Probab=100.00  E-value=2.7e-44  Score=341.76  Aligned_cols=241  Identities=27%  Similarity=0.389  Sum_probs=208.0

Q ss_pred             CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhH---HHHHHHhhcCCCcEEEec
Q 020431           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE---KRLEKWFSQSPSNTIIAT  107 (326)
Q Consensus        31 ~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~---~~i~~~l~~~~~~ipVv~  107 (326)
                      ++++.+|+++|+||+||+.+++.+|+++|+++.+++++++ +.+++.+++..++...+.   +.+.++++  .+.|||++
T Consensus        97 ~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~a~i~~~~s~~~~~~l~~~l~--~g~VpVv~  173 (341)
T PRK08373         97 PSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNAFIDIKKSKRNVKILYELLE--RGRVPVVP  173 (341)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccceeechhhhhhhHHHHHHHHh--CCcEEEEe
Confidence            4578899999999999999999999999999999999998 556677777666654433   56666776  78999999


Q ss_pred             CccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchh
Q 020431          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (326)
Q Consensus       108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~  187 (326)
                      ||++ +.+|.++|+||||||++|+.+|.+|+|+++++||||||||++||+.+|+|++++++||+||.+++++|++++||+
T Consensus       174 Gf~g-~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~  252 (341)
T PRK08373        174 GFIG-NLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWK  252 (341)
T ss_pred             CCcc-CCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHH
Confidence            9998 889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHh
Q 020431          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD  267 (326)
Q Consensus       188 a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~  267 (326)
                      |++++++ +||++|+|++++ .+||+|..+..        ....+.++ ...|.|.|+++|.  .+.++           
T Consensus       253 ai~~a~~-~Ipi~v~~t~~~-~~GT~I~~~~~--------~~~~~~~~-~~~~~~~i~~~~~--~~~~~-----------  308 (341)
T PRK08373        253 AIEPVKG-KIPIIFGRTRDW-RMGTLVSNESS--------GMPILVHK-VGEEHAEILVVGV--EEEIG-----------  308 (341)
T ss_pred             HHHHHHc-CCcEEEecCCCC-CCCcEEecCCC--------CCceEEEE-ecCCEEEEEEecc--CCCCC-----------
Confidence            9999999 999999999987 47999976432        12457777 7889999999983  23222           


Q ss_pred             CCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHH
Q 020431          268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       268 ~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                        +.  .+.  -....+.+.|+.++...+++.+|...+
T Consensus       309 --~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (341)
T PRK08373        309 --YP--VYE--EGEFWFKIKVPKEELIEALREIHRRVF  340 (341)
T ss_pred             --CC--cee--cCCceEEEecCHHHHHHHHHHHHHHhh
Confidence              22  222  347889999999999999999999653

>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

Probab=100.00  E-value=7.7e-45  Score=341.40  Aligned_cols=200  Identities=41%  Similarity=0.636  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCC---c
Q 020431           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---F   85 (326)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~---~   85 (326)
                      +.|..++++|++++.     ++.+++.+|.++|+||+||+++++.+|+++|++|.+++++++++++++.+++..++   .
T Consensus        91 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~  170 (298)
T cd04244          91 SIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATY  170 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHH
Confidence            457778888888876     46788999999999999999999999999999999999999987777766554332   3


Q ss_pred             hhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEE
Q 020431           86 SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (326)
Q Consensus        86 ~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i  165 (326)
                      ...+..+..+++  .+.|||++||+|.+.+|+++|+||||||++|+.+|.+|+|+++++||||||||++||+++|+|+++
T Consensus       171 ~~i~~~l~~ll~--~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i  248 (298)
T cd04244         171 ERVRKRLLPMLE--DGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTI  248 (298)
T ss_pred             HHHHHHHHHHhh--cCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEc
Confidence            233344555555  689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEe
Q 020431          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (326)
Q Consensus       166 ~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~  215 (326)
                      +++||+||.+|+++|++++||+|+++|+++|||++|+|+++|+.+||+|+
T Consensus       249 ~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~~~GT~I~  298 (298)
T cd04244         249 PRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT  298 (298)
T ss_pred             CccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCCCCCCEeC
Confidence            99999999999999999999999999999999999999999999999984

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.

>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

Probab=100.00  E-value=3.7e-44  Score=335.76  Aligned_cols=199  Identities=34%  Similarity=0.543  Sum_probs=178.9

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCC-------CC
Q 020431           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-------VD   82 (326)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-------~~   82 (326)
                      .|+..++.|++++.     ++++++.+|.++|+||+||+++++.+|+++|+++.++++++++++++ .+|.       ..
T Consensus        85 ~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~-~~~~~~~~~~~a~  163 (295)
T cd04259          85 LLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATP-TLGGETMNYLSAR  163 (295)
T ss_pred             HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecc-cccccccccccce
Confidence            46677888888764     47889999999999999999999999999999999999999966543 4443       23


Q ss_pred             CCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCC
Q 020431           83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (326)
Q Consensus        83 ~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a  162 (326)
                      ++...+.+++.+.+.. .+.|||++||+|.+.+|+++|+||||||++|+.+|.+++|+++++||||||||++||+.+|+|
T Consensus       164 v~~~~~~~~l~~~l~~-~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a  242 (295)
T cd04259         164 CESEYADALLQKRLAD-GAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHA  242 (295)
T ss_pred             ehhhhhHHHHHHHHhc-CCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCC
Confidence            3334566788888762 367999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEe
Q 020431          163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (326)
Q Consensus       163 ~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~  215 (326)
                      +++++++|+||.+++++|++++||+|+++++++|||++|+|+++|+.+||+|+
T Consensus       243 ~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~~~GT~I~  295 (295)
T cd04259         243 RLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTLIT  295 (295)
T ss_pred             eEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCCCCCcEeC
Confidence            99999999999999999999999999999999999999999999999999984

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.

>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative

Probab=100.00  E-value=2.5e-41  Score=319.74  Aligned_cols=230  Identities=26%  Similarity=0.390  Sum_probs=195.1

Q ss_pred             ChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhH---HHHHHHhhcCCCcEEEecC
Q 020431           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE---KRLEKWFSQSPSNTIIATG  108 (326)
Q Consensus        32 ~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~---~~i~~~l~~~~~~ipVv~G  108 (326)
                      ++..+|+++|+||+||+++++.     |+++.+++++++ +.+++.+|+..+++..+.   +.+.++++  .+.|||++|
T Consensus        93 ~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~-i~t~~~~~~a~~~~~~~~~~~~~l~~~l~--~g~IpVv~G  164 (327)
T TIGR02078        93 KEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDI-FFAKGDFGNAFIDIKKSKRNAKILYEVLE--SGKIPVIPG  164 (327)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHH-hccCCcCCceeechhhhHhhHHHHHHHHh--CCcEEEEeC
Confidence            5678999999999999999886     899999999998 456667777777765544   34445555  789999999


Q ss_pred             ccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhh
Q 020431          109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT  188 (326)
Q Consensus       109 fi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a  188 (326)
                      |++ +.+|.++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|+||.+++++|++++||+|
T Consensus       165 f~~-~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a  243 (327)
T TIGR02078       165 FYG-NLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKA  243 (327)
T ss_pred             Ccc-CCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHH
Confidence            998 8899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecC-eEEEEEecCCCCCcccHHHHHHHHHHh
Q 020431          189 IIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDN-LALVNVEGTGMAGVPGTANAIFGAVKD  267 (326)
Q Consensus       189 ~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~-ia~IsivG~~~~~~~~i~a~if~~L~~  267 (326)
                      +++++++|||++|+|+++|. +||+|+....           ....+.++++ ++.|++..                   
T Consensus       244 ~~~a~~~~Ipi~I~~t~~~~-~GT~I~~~~~-----------~~~~i~~~~~~i~~v~~~~-------------------  292 (327)
T TIGR02078       244 ADLAKEYKIPVLFGRTRDWR-MGTLISNRSS-----------GMPLMVYKDGELLVVNVRR-------------------  292 (327)
T ss_pred             HHHHHHCCCeEEEEeCCCcC-CCcEEecCCC-----------CCcEEEEccCcEEEEEEee-------------------
Confidence            99999999999999999986 7999976422           2334777877 77777721                   


Q ss_pred             CCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHH
Q 020431          268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF  304 (326)
Q Consensus       268 ~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f  304 (326)
                       .++-..+.  -.+..+++.|+.++...+++.+|...
T Consensus       293 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (327)
T TIGR02078       293 -EISYPVIE--EGEFWKKYKVPKEDGIEIIRELHRKV  326 (327)
T ss_pred             -cccccccc--cCCceEEEecCHHHHHHHHHHHHhhh
Confidence             12222222  34678999999999999999999854

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.

>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

Probab=100.00  E-value=1.2e-41  Score=316.15  Aligned_cols=175  Identities=21%  Similarity=0.339  Sum_probs=154.2

Q ss_pred             CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhc--CCCcEEEe
Q 020431           29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ--SPSNTIIA  106 (326)
Q Consensus        29 ~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~--~~~~ipVv  106 (326)
                      ++++++.+|.++|+||+||+.+++.+|+++|++|.++++..+.. .+    ... +.    +++.+.+..  ..+.|||+
T Consensus       126 ~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~-~~----~~t-~~----~~i~~~~~~~~~~~~v~Iv  195 (304)
T cd04248         126 AEHLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRD-SG----DMT-LD----ERISEAFRDIDPRDELPIV  195 (304)
T ss_pred             hhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccc-cC----CCC-cH----HHHHHHHHhhccCCcEEEe
Confidence            48899999999999999999999999999999999998875522 11    111 22    344444431  25689999


Q ss_pred             cCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCC--CCCeEEeeecHHHHHHHhhcCCccc
Q 020431          107 TGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVILRTLSYQEAWEMSYFGANVL  184 (326)
Q Consensus       107 ~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~--~~a~~i~~ls~~e~~~l~~~g~~v~  184 (326)
                      +|| +.+.+|.++|+|||||||+|+.+|.+++|++++|||||+ |||+|||++  ++|++++++||+||.||+++|++++
T Consensus       196 tGF-~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvL  273 (304)
T cd04248         196 TGY-AKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAI  273 (304)
T ss_pred             CCc-cCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhc
Confidence            999 567899999999999999999999999999999999995 999999999  5899999999999999999999999


Q ss_pred             chhhHHHHHhCCCCEEEEeccCCCCCceEEe
Q 020431          185 HPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (326)
Q Consensus       185 ~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~  215 (326)
                      ||+|++++++++||++|+|+++|+.+||+|+
T Consensus       274 HP~ai~pa~~~~IPi~Vkntf~P~~~GTlIt  304 (304)
T cd04248         274 HPKAAKGLRQAGIPLRVKNTFEPDHPGTLIT  304 (304)
T ss_pred             CHHHHHHHHHcCCeEEEecCCCCCCCCceeC
Confidence            9999999999999999999999999999984

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

Probab=100.00  E-value=8e-37  Score=279.22  Aligned_cols=181  Identities=33%  Similarity=0.481  Sum_probs=165.0

Q ss_pred             CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCcc
Q 020431           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (326)
Q Consensus        31 ~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi  110 (326)
                      .+.+..+.+++.||++++.++++.|+++|++++++++.++.+++.+.++..++... ..+.++++++  .+.|||++||+
T Consensus        59 ~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~~-~~~~l~~ll~--~~~ipVi~G~~  135 (239)
T cd04261          59 PPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDI-DPDRIRELLE--EGDVVIVAGFQ  135 (239)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcceechh-hHHHHHHHHH--cCCeEEEcCcc
Confidence            45678889999999999999999999999999999999987776655533233221 2378889998  78999999999


Q ss_pred             ccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHH
Q 020431          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (326)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~  190 (326)
                      +.+++|.+++++||++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++++.|++++||+|++
T Consensus       136 ~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~  215 (239)
T cd04261         136 GINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVE  215 (239)
T ss_pred             ccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEeccCCCCCceEEe
Q 020431          191 PVMRYDIPIVIRNIFNLSVPGIMIC  215 (326)
Q Consensus       191 ~a~~~~I~v~I~n~~~~~~~GT~I~  215 (326)
                      ++.++|||++|.|+++|+ +||+|+
T Consensus       216 ~~~~~~i~i~I~n~~~~~-~gt~i~  239 (239)
T cd04261         216 LAKKYGVPLRVLSSFSEE-PGTLIT  239 (239)
T ss_pred             HHHHcCCeEEEecCCCCC-CCcEeC
Confidence            999999999999999999 999984

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and

>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

Probab=100.00  E-value=8.3e-37  Score=279.93  Aligned_cols=182  Identities=34%  Similarity=0.509  Sum_probs=165.3

Q ss_pred             CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCc
Q 020431           30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (326)
Q Consensus        30 ~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gf  109 (326)
                      ..+++.++.++++||.+++++++++|+++|+++..+++.++++++.+.++..++... ..+.++++++  .+.|||++||
T Consensus        63 ~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~~-~~~~l~~ll~--~g~VPVv~g~  139 (244)
T cd04260          63 DISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKV-NPKKILSALK--EGDVVVVAGF  139 (244)
T ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeecc-CHHHHHHHHh--CCCEEEecCC
Confidence            456778899999999999999999999999999999999988877665543222111 1267888888  8899999999


Q ss_pred             cccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhH
Q 020431          110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (326)
Q Consensus       110 i~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~  189 (326)
                      ++.+++|++++++|||||++|+.+|.+|+|+++++||||||||++||+.+++++++++|+|+|+.++++.|++++||+|+
T Consensus       140 ~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~  219 (244)
T cd04260         140 QGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAV  219 (244)
T ss_pred             cccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEEeccCCCCCceEEe
Q 020431          190 IPVMRYDIPIVIRNIFNLSVPGIMIC  215 (326)
Q Consensus       190 ~~a~~~~I~v~I~n~~~~~~~GT~I~  215 (326)
                      ++++++++|++|.|+++|+ +||+|+
T Consensus       220 ~~~~~~~i~v~I~~~~~~~-~gt~i~  244 (244)
T cd04260         220 EIAMQANIPIRIRSTMSEN-PGTLIT  244 (244)
T ss_pred             HHHHHcCCeEEEecCCCCC-CCCEeC
Confidence            9999999999999999988 899984

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet

>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

Probab=100.00  E-value=3.6e-37  Score=279.44  Aligned_cols=199  Identities=39%  Similarity=0.656  Sum_probs=172.9

Q ss_pred             HHHHHHHHHHHhhhc-----------CCCChhHHh--HhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCC
Q 020431           14 EFIRSTYNFLSNVDS-----------GHATESFTD--FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ   80 (326)
Q Consensus        14 ~~i~~~~~~l~~~~~-----------~~~~~~~~d--~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~   80 (326)
                      +.++...+.+.++-.           +..+....+  .++|.||.+|+++++++|+++|+++.++++.++++++++. +.
T Consensus        15 ~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~t~~l~~~~~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~-~~   93 (227)
T cd04234          15 ERIKRVADIIKAYEKGNRVVVVVSAMGGVTDLLIELALLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDN-HG   93 (227)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCc-cc
Confidence            466677777776511           123444333  6888999999999999999999999999999998876543 22


Q ss_pred             CCCCchhhHHHHHHHhhcCC-CcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCC
Q 020431           81 VDPDFSESEKRLEKWFSQSP-SNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV  159 (326)
Q Consensus        81 ~~~~~~~~~~~i~~~l~~~~-~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~  159 (326)
                      .........+.++++++  . +.|||++||++.+++|++++++|||||++|+.+|.+|+|+++++||||||||++||+.+
T Consensus        94 ~~~~~~~~~~~l~~~l~--~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~  171 (227)
T cd04234          94 AARIIEISYERLKELLA--EIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIV  171 (227)
T ss_pred             hhhHHHHHHHHHHHHHh--hCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCC
Confidence            22334445688999988  7 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEe
Q 020431          160 SEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (326)
Q Consensus       160 ~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~  215 (326)
                      |+++++++++|+|+.++++.|+++|||+|+++|.++|+|++|.|+++|+..||+|+
T Consensus       172 ~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~~~gT~I~  227 (227)
T cd04234         172 PEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT  227 (227)
T ss_pred             CCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCCCCCCEeC
Confidence            99999999999999999999999999999999999999999999999988999984

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd

>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

Probab=100.00  E-value=3.2e-36  Score=275.18  Aligned_cols=180  Identities=33%  Similarity=0.513  Sum_probs=164.2

Q ss_pred             ChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccc
Q 020431           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (326)
Q Consensus        32 ~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~  111 (326)
                      +....+.+++.||+++++++++.|+++|+++.++++.++.+.+..+++..++.. ...+.++++++  .+.|||++||+|
T Consensus        60 ~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~~-~~~~~l~~ll~--~g~ipVi~g~~~  136 (239)
T cd04246          60 SPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIID-IDPKRILEALE--EGDVVVVAGFQG  136 (239)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceeech-hhHHHHHHHHh--cCCEEEEcCccc
Confidence            567789999999999999999999999999999999998666655554333322 23488899998  789999999999


Q ss_pred             cCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHH
Q 020431          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (326)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~  191 (326)
                      .+++|.+++++|||+|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++++.|++++||+|+++
T Consensus       137 ~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~  216 (239)
T cd04246         137 VNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVEL  216 (239)
T ss_pred             cCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCEEEEeccCCCCCceEEe
Q 020431          192 VMRYDIPIVIRNIFNLSVPGIMIC  215 (326)
Q Consensus       192 a~~~~I~v~I~n~~~~~~~GT~I~  215 (326)
                      ++++|||++|.|+++|+ +||+|+
T Consensus       217 a~~~gi~i~i~~~~~~~-~gt~i~  239 (239)
T cd04246         217 AKKYNVPLRVRSSFSEN-PGTLIT  239 (239)
T ss_pred             HHHCCCeEEEecCCCCC-CCcEeC
Confidence            99999999999999998 999984

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati

>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

Probab=99.97  E-value=2.8e-29  Score=229.64  Aligned_cols=180  Identities=37%  Similarity=0.498  Sum_probs=157.1

Q ss_pred             CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCcc
Q 020431           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (326)
Q Consensus        31 ~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi  110 (326)
                      .++...+.+++.||.++++++++.|+++|+++..+++.++.+.+++ ++..........+.++++++  .+.|||++||.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~~-~~~~g~~~~~~~~~l~~~l~--~~~ipVv~g~~  137 (248)
T cd02115          61 ITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPN-QGHVGKITKVSTDRLKSLLE--NGILPILSGFG  137 (248)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeCC-CCCcccceeeCHHHHHHHHh--CCcEEEecCeE
Confidence            4567788999999999999999999999999999999998776643 33322223334488999998  79999999998


Q ss_pred             ccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHH
Q 020431          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (326)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~  190 (326)
                      +.+.+ +..+++|++||++|+.+|.+|+|++++|||||||||++||+++++++++++++++|+.++++.|..++||+++.
T Consensus       138 ~~~~~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~  216 (248)
T cd02115         138 GTDEK-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAAD  216 (248)
T ss_pred             eccCC-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHH
Confidence            87765 67778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEeccC--------CCCCceEE
Q 020431          191 PVMRYDIPIVIRNIFN--------LSVPGIMI  214 (326)
Q Consensus       191 ~a~~~~I~v~I~n~~~--------~~~~GT~I  214 (326)
                      ++.++|++++|.|+.+        ++..||+|
T Consensus       217 ~~~~~~~~v~I~~~~~~~~l~~~~~~~~GT~I  248 (248)
T cd02115         217 PAARAGIPVRIANTENPGALALFTPDGGGTLI  248 (248)
T ss_pred             HHHHcCCcEEEEeCCCcccccccCCCCCCCCC
Confidence            9999999999999887        34556654

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.

>PRK14558 pyrH uridylate kinase; Provisional

Probab=99.94  E-value=1.7e-25  Score=203.52  Aligned_cols=182  Identities=23%  Similarity=0.322  Sum_probs=147.0

Q ss_pred             hhHHHHHHHHHHHHhhhc-----------C---------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccce
Q 020431           11 LSYEFIRSTYNFLSNVDS-----------G---------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV   70 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~-----------~---------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~   70 (326)
                      ++.+.|+...++|.++.+           +         ..++...|.+...||+|++.+++..|.++|++++++++.  
T Consensus        20 ~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~~~~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~~--   97 (231)
T PRK14558         20 FDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELKELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQI--   97 (231)
T ss_pred             cCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccc--
Confidence            677788888887776532           1         234556788888899999999999999999999999862  


Q ss_pred             eeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCc
Q 020431           71 LIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG  150 (326)
Q Consensus        71 ~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~G  150 (326)
                      .  ....     + .....+.+..+++  .+.|||++||.+   ...      +.+|++|+++|..++|+++++||||||
T Consensus        98 ~--~~~~-----~-~~~~~~~i~~ll~--~g~vpV~~G~~~---~~~------~~~D~~a~~lA~~l~a~~l~~~tdVdG  158 (231)
T PRK14558         98 V--NLPS-----V-EPINYDDIELYFR--AGYIVIFAGGTS---NPF------FTTDTAAALRAVEMKADILIKATKVDG  158 (231)
T ss_pred             c--ccch-----h-hhhhHHHHHHHHH--CCCEEEEECCCC---CCC------CCcHHHHHHHHHHcCCCEEEEEecCCe
Confidence            1  1111     1 1223478888888  889999999853   111      235999999999999999999999999


Q ss_pred             ccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCC---------CCceEEeC
Q 020431          151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMICR  216 (326)
Q Consensus       151 v~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~---------~~GT~I~~  216 (326)
                      ||++||+++|+|+++++++++|+.++   |++++||+++++|.++|+|++|.|+++++         ..||.|.+
T Consensus       159 vy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~  230 (231)
T PRK14558        159 IYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP  230 (231)
T ss_pred             eEccCCCCCCCCeEcccccHHHHHHc---CcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence            99999999999999999999998876   78999999999999999999999987543         35777754

>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

Probab=99.92  E-value=2.9e-24  Score=197.75  Aligned_cols=159  Identities=18%  Similarity=0.281  Sum_probs=130.5

Q ss_pred             hHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccC
Q 020431           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (326)
Q Consensus        34 ~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~  113 (326)
                      ..++.++|+||..+.++++..|+++|+++.     +++ .+++.++.... +....+.++++++  .+.|||+++     
T Consensus        65 ~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~-----q~l-~t~~~~~~~~~-~~~~~~~i~~ll~--~g~iPVv~~-----  130 (251)
T cd04242          65 PEKQALAAVGQSLLMALYEQLFAQYGIKVA-----QIL-LTRDDFEDRKR-YLNARNTLETLLE--LGVIPIINE-----  130 (251)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-----EEE-EehhHhcchHH-HHHHHHHHHHHHH--CCCEEEEcC-----
Confidence            456889999999999999999999999963     332 34433322111 2223467888888  889999964     


Q ss_pred             CCCCccc--ccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeec--HHHHHHHh-----hcCCccc
Q 020431          114 PDNIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS--YQEAWEMS-----YFGANVL  184 (326)
Q Consensus       114 ~~g~~~~--lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls--~~e~~~l~-----~~g~~v~  184 (326)
                       ++.+++  ++||++|++|+.+|.+|+|++++|||||||||++||+.+|+++++++++  ++|+.+++     .+++++|
T Consensus       131 -~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm  209 (251)
T cd04242         131 -NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGM  209 (251)
T ss_pred             -CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCc
Confidence             233444  7899999999999999999999999999999999999999999999999  99999985     5778999


Q ss_pred             ch--hhHHHHHhCCCCEEEEeccCC
Q 020431          185 HP--RTIIPVMRYDIPIVIRNIFNL  207 (326)
Q Consensus       185 ~~--~a~~~a~~~~I~v~I~n~~~~  207 (326)
                      +|  +++..+.++|++++|.|+..|
T Consensus       210 ~~Kl~a~~~a~~~gi~v~I~~g~~~  234 (251)
T cd04242         210 RTKLKAARIATEAGIPVVIANGRKP  234 (251)
T ss_pred             HHHHHHHHHHHHCCCcEEEEcCCCC
Confidence            99  688999999999999998755

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir

>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

Probab=99.92  E-value=3.9e-24  Score=194.26  Aligned_cols=174  Identities=21%  Similarity=0.256  Sum_probs=142.5

Q ss_pred             hhHHHHHHHHHHHHhhhc---------C-------------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEccc
Q 020431           11 LSYEFIRSTYNFLSNVDS---------G-------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~-------------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~   68 (326)
                      ++.++|+...+.+.++.+         +             ..++...+.+.+.||++++.+|+..|.++|+++..+++.
T Consensus        18 ~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~   97 (229)
T cd04239          18 IDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAI   97 (229)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHH
Confidence            556777777777765431         1             123455678888999999999999999999999999998


Q ss_pred             ceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeecc
Q 020431           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (326)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV  148 (326)
                      ++...+.      ..+.    +.+.++++  .+.|||++||.+..     .    +.||++|+.+|..++|+++++||||
T Consensus        98 ~~~~~~~------~~~~----~~l~~~l~--~g~ipVi~g~~g~~-----~----~~sD~~A~~lA~~l~a~~li~~tdV  156 (229)
T cd04239          98 PMQGVAE------PYIR----RRAIRHLE--KGRIVIFGGGTGNP-----G----FTTDTAAALRAEEIGADVLLKATNV  156 (229)
T ss_pred             HHhhhhc------cccH----HHHHHHHh--CCCEEEEeCccCCC-----C----CCcHHHHHHHHHHcCCCEEEEEECC
Confidence            7743321      1123    67888888  88999999996422     1    2479999999999999999999999


Q ss_pred             CcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCC
Q 020431          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS  208 (326)
Q Consensus       149 ~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~  208 (326)
                      ||||++||+.+|+|+++++++++|+.+++.   +++|+.+++++.++|++++|.|+++|+
T Consensus       157 dGvy~~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~~~a~~~~~~~~i~v~I~~g~~~~  213 (229)
T cd04239         157 DGVYDADPKKNPDAKKYDRISYDELLKKGL---KVMDATALTLCRRNKIPIIVFNGLKPG  213 (229)
T ss_pred             CcccCCCCCCCCCCeEEeEEcHHHHHHHhc---CCccHHHHHHHHHCCCeEEEECCCChh
Confidence            999999999999999999999999988863   889999999999999999999987653

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als

>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families

Probab=99.91  E-value=2.3e-25  Score=203.05  Aligned_cols=112  Identities=35%  Similarity=0.488  Sum_probs=107.9

Q ss_pred             HHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeec
Q 020431           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls  169 (326)
                      +.++++++  .+.|||++||.+.+.+|++++++++++|++|+.||.+|+|++++|||||||||++||+.+|+++++++|+
T Consensus       125 ~~i~~~l~--~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~  202 (242)
T PF00696_consen  125 EAIRELLE--QGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELS  202 (242)
T ss_dssp             HHHHHHHH--TTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEE
T ss_pred             HHHHHHHH--CCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEee
Confidence            88999998  7999999999989999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh------hcCCcccchhhHHHHHhCCCCEEEEe
Q 020431          170 YQEAWEMS------YFGANVLHPRTIIPVMRYDIPIVIRN  203 (326)
Q Consensus       170 ~~e~~~l~------~~g~~v~~~~a~~~a~~~~I~v~I~n  203 (326)
                      ++|+.+++      +.|++++||.|++++++++++++|+|
T Consensus       203 ~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n  242 (242)
T PF00696_consen  203 YDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN  242 (242)
T ss_dssp             HHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence            99999999      78899999999999999999999986

In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....

>PRK00358 pyrH uridylate kinase; Provisional

Probab=99.91  E-value=1e-23  Score=191.69  Aligned_cols=174  Identities=22%  Similarity=0.290  Sum_probs=136.2

Q ss_pred             hhHHHHHHHHHHHHhhhc---------C--C-----------CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEccc
Q 020431           11 LSYEFIRSTYNFLSNVDS---------G--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~--~-----------~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~   68 (326)
                      ++.+.++...+.+.++..         +  .           .++...+.+.+.+++++++++++.|.++|+++..+++.
T Consensus        20 ~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~   99 (231)
T PRK00358         20 IDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMDRATADYMGMLATVMNALALQDALERAGVDTRVQSAI   99 (231)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechh
Confidence            466777777776665432         1  0           11233566777899999999999999999999977664


Q ss_pred             ceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeecc
Q 020431           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (326)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV  148 (326)
                      .+...+.        .+  ..+.+.++++  .+.|||++|+.+     ..    .+.+|++|+++|.+|+|+++++||||
T Consensus       100 ~~~~~~~--------~~--~~~~~~~~l~--~g~vPVv~g~~~-----~~----~~ssD~~A~~lA~~l~A~~li~~tdV  158 (231)
T PRK00358        100 PMPQVAE--------PY--IRRRAIRHLE--KGRVVIFAAGTG-----NP----FFTTDTAAALRAEEIGADVLLKATNV  158 (231)
T ss_pred             hcccccC--------cc--cHHHHHHHHH--CCCEEEEECCCC-----CC----CCCchHHHHHHHHHcCCCEEEEeeCc
Confidence            4422211        11  1256778888  889999988632     11    12479999999999999999999999


Q ss_pred             CcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCC
Q 020431          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS  208 (326)
Q Consensus       149 ~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~  208 (326)
                      ||||++||+.+|+|+++++++++|+.++   |++++|+.++++|.++|++++|.|+++|+
T Consensus       159 dGVy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~~i~v~I~~g~~~~  215 (231)
T PRK00358        159 DGVYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMDATAISLARDNKIPIIVFNMNKPG  215 (231)
T ss_pred             CceEcCCCCCCCCCEEeeEecHHHHHHc---CCcchhHHHHHHHHHcCCcEEEECCCCch
Confidence            9999999999999999999999987666   88999999999999999999999987553

>PRK12314 gamma-glutamyl kinase; Provisional

Probab=99.91  E-value=4.7e-23  Score=191.13  Aligned_cols=191  Identities=17%  Similarity=0.230  Sum_probs=144.3

Q ss_pred             hhHHHHHHHHHHHHhhhc----------C--------------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEc
Q 020431           11 LSYEFIRSTYNFLSNVDS----------G--------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD   66 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~----------~--------------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~   66 (326)
                      ++.++|+...+.+.++..          +              +...+.++.+.|.||.++.+++..+|+++|+++    
T Consensus        28 ~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~----  103 (266)
T PRK12314         28 INLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRPTSLAEKQALAAVGQPELMSLYSKFFAEYGIVV----  103 (266)
T ss_pred             cCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeE----
Confidence            577788888777775432          1              112356789999999999999999999999964    


Q ss_pred             ccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCccccc----CCcchHHHHHHHHhhccceE
Q 020431           67 TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLK----RDGSDFSAAIMGALLRAHQV  142 (326)
Q Consensus        67 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lg----rggsD~~A~~lA~~l~a~~~  142 (326)
                       +++ +.+++.|+..+. +....+.++++++  .|.|||+.+      ++.+++.+    +|++|++|+++|.+++|+.+
T Consensus       104 -~q~-llT~~~~~~~~~-~~~~~~~l~~ll~--~g~IPVv~~------nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~l  172 (266)
T PRK12314        104 -AQI-LLTRDDFDSPKS-RANVKNTFESLLE--LGILPIVNE------NDAVATDEIDTKFGDNDRLSAIVAKLVKADLL  172 (266)
T ss_pred             -EEE-EEecccccchHH-HHHHHHHHHHHHH--CCCEEEEcC------CCCeeeccccceecchHHHHHHHHHHhCCCEE
Confidence             455 334444432211 2334578888888  889999964      23333333    78999999999999999999


Q ss_pred             EEeeccCcccccCCCCCCCCeEEeeecH--HHHHHHhhc-----CCccc--chhhHHHHHhCCCCEEEEeccCCC-----
Q 020431          143 TIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSYF-----GANVL--HPRTIIPVMRYDIPIVIRNIFNLS-----  208 (326)
Q Consensus       143 ~~~tDV~Gv~~~dP~~~~~a~~i~~ls~--~e~~~l~~~-----g~~v~--~~~a~~~a~~~~I~v~I~n~~~~~-----  208 (326)
                      +|||||||||++||+.+|+|++++++++  .|..+++..     |.++|  +++++..|.++|++++|.|+.+|+     
T Consensus       173 iilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~  252 (266)
T PRK12314        173 IILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDF  252 (266)
T ss_pred             EEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHH
Confidence            9999999999999999999999999986  556555432     33445  557999999999999999987553     


Q ss_pred             ----CCceEEeC
Q 020431          209 ----VPGIMICR  216 (326)
Q Consensus       209 ----~~GT~I~~  216 (326)
                          ..||+|.+
T Consensus       253 l~g~~~GT~i~~  264 (266)
T PRK12314        253 LEGESIGTLFAP  264 (266)
T ss_pred             HcCCCCceEEcc
Confidence                46998865

>PRK14557 pyrH uridylate kinase; Provisional

Probab=99.90  E-value=4.3e-23  Score=189.08  Aligned_cols=162  Identities=17%  Similarity=0.262  Sum_probs=127.9

Q ss_pred             ChhHHhHhhccchHHHHHHHHHHHHHc-CCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCcc
Q 020431           32 TESFTDFVVGHGELWSAQMLAAVVRKN-GIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (326)
Q Consensus        32 ~~~~~d~i~~~GE~~s~~~~~~~L~~~-Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi  110 (326)
                      +....|.+.+.||+||+.++...|++. +..+        .+.++..++... . +....++.+.++  .|.|||++||.
T Consensus        67 ~~~~~D~ig~~g~~lna~ll~~~l~~~~~~~~--------~i~t~~~~~~~~-~-~~~~~~~~~~l~--~g~VvV~~G~~  134 (247)
T PRK14557         67 DRVEADNIGTLGTIINSLMLRGVLTSKTNKEV--------RVMTSIPFNAVA-E-PYIRLRAVHHLD--NGYIVIFGGGN  134 (247)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhCCce--------eEEecccccccc-c-hhhHHHHHHHHh--CCCEEEEECCc
Confidence            345668999999999999999999984 4443        333433332211 1 112244666676  78899999987


Q ss_pred             ccCCCCCcccccCCcchHHHHHHHHhhccceEEEee-ccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhH
Q 020431          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (326)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~t-DV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~  189 (326)
                      +.   +.++      +|++|+++|..++|+.+++|| ||||||++||+++|+|+++++++|.|+.   ..+.++|+++|+
T Consensus       135 g~---~~~s------tD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~~~A~  202 (247)
T PRK14557        135 GQ---PFVT------TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAAL  202 (247)
T ss_pred             CC---CccC------hHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHHHHHH
Confidence            63   3344      599999999999999999995 9999999999999999999999999873   456789999999


Q ss_pred             HHHHhCCCCEEEEeccCCC---------CCceEEeCC
Q 020431          190 IPVMRYDIPIVIRNIFNLS---------VPGIMICRP  217 (326)
Q Consensus       190 ~~a~~~~I~v~I~n~~~~~---------~~GT~I~~~  217 (326)
                      ++|.++|+|++|.|+.+|+         ..||+|.+.
T Consensus       203 ~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~  239 (247)
T PRK14557        203 LLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD  239 (247)
T ss_pred             HHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecC
Confidence            9999999999999987553         469999764

>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.90  E-value=4.6e-23  Score=187.51  Aligned_cols=155  Identities=24%  Similarity=0.278  Sum_probs=130.3

Q ss_pred             HhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCC
Q 020431           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (326)
Q Consensus        36 ~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~  115 (326)
                      .|.+.+.|+++++.++++.|+++|+++..+++.++....      ...+.    +.++++++  .+.|||++||.|    
T Consensus        67 ~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~~------~~~~~----~~l~~~l~--~g~ipV~~g~~G----  130 (231)
T cd04254          67 ADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVA------EPYIR----RRAIRHLE--KGRVVIFAGGTG----  130 (231)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhhh------cccCH----HHHHHHHH--CCCEEEEECCcC----
Confidence            455667799999999999999999999999998762211      11344    78888888  789999998854    


Q ss_pred             CCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhC
Q 020431          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY  195 (326)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~  195 (326)
                       ...+    .+|++|+++|.+|+|+++++||||||||++||+.+|+++++++++++|+.+   .|++++|+.++++|.++
T Consensus       131 -~~~~----~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~---~~~~~~d~~a~~~a~~~  202 (231)
T cd04254         131 -NPFF----TTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLS---KGLKVMDATAFTLCRDN  202 (231)
T ss_pred             -CCCC----CcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHh---cchhhhHHHHHHHHHHC
Confidence             2111    259999999999999999999999999999999999999999999999866   47889999999999999


Q ss_pred             CCCEEEEeccCCC---------CCceEE
Q 020431          196 DIPIVIRNIFNLS---------VPGIMI  214 (326)
Q Consensus       196 ~I~v~I~n~~~~~---------~~GT~I  214 (326)
                      |++++|.|+.+|+         ..||+|
T Consensus       203 gi~~~I~~g~~~~~l~~~l~g~~~GT~i  230 (231)
T cd04254         203 NLPIVVFNINEPGNLLKAVKGEGVGTLI  230 (231)
T ss_pred             CCeEEEEeCCCccHHHHHHCCCCCCEEe
Confidence            9999999987553         357776

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be

>TIGR02075 pyrH_bact uridylate kinase

Probab=99.89  E-value=1.5e-22  Score=184.39  Aligned_cols=155  Identities=22%  Similarity=0.275  Sum_probs=130.3

Q ss_pred             HhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCC
Q 020431           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (326)
Q Consensus        36 ~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~  115 (326)
                      .|.+.+.++++++++|+..|.++|+++..+++.++.. ....         ...+.++++++  .|.|||+.|+.+.   
T Consensus        68 ~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~~-~~~~---------~~~~~i~~ll~--~g~VpV~~g~~g~---  132 (233)
T TIGR02075        68 ADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQ-ICES---------YIRRKAIKHLE--KGKVVIFSGGTGN---  132 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCCC-Cccc---------cCHHHHHHHHH--CCCEEEEECCCCC---
Confidence            5778888999999999999999999999999987651 1111         12377888888  7899999987542   


Q ss_pred             CCcccccCCcchHHHHHHHHhhccceEEEeec-cCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHh
Q 020431          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR  194 (326)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tD-V~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~  194 (326)
                      ..      ..+|++|+++|..|+|+++++||| |||||++||+++|+++++++++++|+.++   |++++|+.++++|.+
T Consensus       133 ~~------~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d~~~~~~a~~  203 (233)
T TIGR02075       133 PF------FTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARD  203 (233)
T ss_pred             CC------CCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHHHHHHHHHHH
Confidence            11      125999999999999999999999 99999999999999999999999998764   778999999999999


Q ss_pred             CCCCEEEEeccCCC---------CCceEE
Q 020431          195 YDIPIVIRNIFNLS---------VPGIMI  214 (326)
Q Consensus       195 ~~I~v~I~n~~~~~---------~~GT~I  214 (326)
                      +|++++|.|+.+|+         ..||.|
T Consensus       204 ~~i~v~i~~g~~~~~l~~~l~g~~~GT~i  232 (233)
T TIGR02075       204 NNLPIVVFNIDEPGALKKVILGKGIGTLV  232 (233)
T ss_pred             CCCeEEEEeCCCcchHHHHHCCCCCCEEe
Confidence            99999999987543         457766

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.

>PRK13402 gamma-glutamyl kinase; Provisional

Probab=99.87  E-value=1.5e-21  Score=188.11  Aligned_cols=193  Identities=17%  Similarity=0.244  Sum_probs=150.5

Q ss_pred             hhhHHHHHHHHHHHHhhhcC-----------------------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEc
Q 020431           10 ELSYEFIRSTYNFLSNVDSG-----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD   66 (326)
Q Consensus        10 ~~~~~~i~~~~~~l~~~~~~-----------------------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~   66 (326)
                      .|+.+++....+++..+...                       ...-..++.+.+.||.++.+.+...|.++|+++..  
T Consensus        23 ~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~~~l~~~~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~aq--  100 (368)
T PRK13402         23 GCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKLGFIDRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAAQ--  100 (368)
T ss_pred             CcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCccccCCCCCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEEE--
Confidence            47788888877777765531                       01234567888999999999999999999998843  


Q ss_pred             ccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCccc--ccCCcchHHHHHHHHhhccceEEE
Q 020431           67 TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LKRDGSDFSAAIMGALLRAHQVTI  144 (326)
Q Consensus        67 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~--lgrggsD~~A~~lA~~l~a~~~~~  144 (326)
                         +++ +.+.+.. +-.+...+..++++++  .+.|||+..      ++.+++  +++|++|++|+++|.+++|+.+++
T Consensus       101 ---vLl-T~~d~~~-~~~y~n~~~~l~~LL~--~g~IPIine------nD~v~~~el~~GdnD~lAa~vA~~l~Ad~Lii  167 (368)
T PRK13402        101 ---LLL-THGDLRD-RERYINIRNTINVLLE--RGILPIINE------NDAVTTDRLKVGDNDNLSAMVAALADADTLII  167 (368)
T ss_pred             ---EEE-ecchhhh-HHHHHHHHHHHHHHHH--CCcEEEEeC------CCcEeecccccCChHHHHHHHHHHhCCCEEEE
Confidence               323 3222211 1123344678888888  889999852      223343  778999999999999999999999


Q ss_pred             eeccCcccccCCCCCCCCeEEeeecH--HHHHHHh-----hcCCcccch--hhHHHHHhCCCCEEEEeccCC--------
Q 020431          145 WTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMS-----YFGANVLHP--RTIIPVMRYDIPIVIRNIFNL--------  207 (326)
Q Consensus       145 ~tDV~Gv~~~dP~~~~~a~~i~~ls~--~e~~~l~-----~~g~~v~~~--~a~~~a~~~~I~v~I~n~~~~--------  207 (326)
                      ||||||||++||+.+|+|++++++++  +|+.+++     ..|+++|+|  .++..|.++|++++|.|+..|        
T Consensus       168 lTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~  247 (368)
T PRK13402        168 LSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLK  247 (368)
T ss_pred             EecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhc
Confidence            99999999999999999999999997  7777776     367899999  589999999999999998765        


Q ss_pred             -CCCceEEeCC
Q 020431          208 -SVPGIMICRP  217 (326)
Q Consensus       208 -~~~GT~I~~~  217 (326)
                       +..||+|.+.
T Consensus       248 g~~~GT~i~~~  258 (368)
T PRK13402        248 GQNPGTYFTPE  258 (368)
T ss_pred             CCCCceEEecC
Confidence             3469999764

>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]

Probab=99.87  E-value=5.3e-21  Score=170.36  Aligned_cols=181  Identities=23%  Similarity=0.281  Sum_probs=146.3

Q ss_pred             hhHHHHHHHHHHHHhhhcC----------------------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEccc
Q 020431           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~----------------------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~   68 (326)
                      .+.++++.+.++|.++.+.                      -.+....|++=...-+++|.++.+.|.+.|+++..+++.
T Consensus        25 id~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai  104 (238)
T COG0528          25 IDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAI  104 (238)
T ss_pred             CCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccc
Confidence            6788899988888888851                      134455666666777889999999999999999999886


Q ss_pred             ceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeec-
Q 020431           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-  147 (326)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tD-  147 (326)
                      ....+.          .+.+++...++++  .++|+|..|  | +.+-.++|      |++|+++|..++|+-++..|+ 
T Consensus       105 ~~~~~~----------e~~~~~~A~~~l~--~grVvIf~g--G-tg~P~fTT------Dt~AALrA~ei~ad~ll~atn~  163 (238)
T COG0528         105 AMPQVA----------EPYSRREAIRHLE--KGRVVIFGG--G-TGNPGFTT------DTAAALRAEEIEADVLLKATNK  163 (238)
T ss_pred             cCcccc----------CccCHHHHHHHHH--cCCEEEEeC--C-CCCCCCch------HHHHHHHHHHhCCcEEEEeccC
Confidence            663211          1234477777888  899999876  2 33333443      999999999999999999995 


Q ss_pred             cCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCC---------CCceEEe
Q 020431          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMIC  215 (326)
Q Consensus       148 V~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~---------~~GT~I~  215 (326)
                      |||||++||+++|+|+.+++|||.|+.++   +.++|||.|+.++++++||++++|.+++.         ..||+|.
T Consensus       164 VDGVY~~DPkk~pdA~~~~~Lty~e~l~~---~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~  237 (238)
T COG0528         164 VDGVYDADPKKDPDAKKYDTLTYDEVLKI---GLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE  237 (238)
T ss_pred             CCceeCCCCCCCCCceecccCCHHHHHHh---cCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence            99999999999999999999999998877   58999999999999999999999976543         4577764

>PRK14556 pyrH uridylate kinase; Provisional

Probab=99.87  E-value=5.1e-21  Score=174.38  Aligned_cols=181  Identities=18%  Similarity=0.248  Sum_probs=146.1

Q ss_pred             hhHHHHHHHHHHHHhhhc-C------------------C----CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcc
Q 020431           11 LSYEFIRSTYNFLSNVDS-G------------------H----ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDT   67 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~-~------------------~----~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~   67 (326)
                      ++.++++.+.+++.++.+ +                  .    .+....|++=.-+-+++|.++.+.|.+.|+++..+++
T Consensus        35 ~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa  114 (249)
T PRK14556         35 INVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSA  114 (249)
T ss_pred             cCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeec
Confidence            677888888888887775 1                  1    3334677877788999999999999999999999887


Q ss_pred             cceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeec
Q 020431           68 REVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD  147 (326)
Q Consensus        68 ~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tD  147 (326)
                      -...-     +    +.+ .+++.+.+.++  .|.|+|+.|+.|   ++.++      +|++|+++|..++|+.+++|||
T Consensus       115 ~~~~~-----~----~e~-~~~~~~~~~l~--~g~vvi~~gg~G---~p~~S------tD~lAallA~~l~Ad~Lii~Td  173 (249)
T PRK14556        115 KGVDG-----L----LKV-ASAHEFNQELA--KGRVLIFAGGTG---NPFVT------TDTTASLRAVEIGADALLKATT  173 (249)
T ss_pred             cccCc-----C----CCC-CCHHHHHHHHh--CCCEEEEECCCC---CCcCC------cHHHHHHHHHHcCCCEEEEEeC
Confidence            44311     1    111 14477778887  788999888754   34444      3999999999999999999999


Q ss_pred             cCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCC---------CCceEEe
Q 020431          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMIC  215 (326)
Q Consensus       148 V~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~---------~~GT~I~  215 (326)
                      |||||++||+++|+|+++++++|.|+.+.   +.++|++.+++++.++|+|++|.|+.+|+         ..||+|.
T Consensus       174 VDGVYd~DP~~~p~A~~i~~I~~~e~~~~---~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~  247 (249)
T PRK14556        174 VNGVYDKDPNKYSDAKRFDKVTFSEVVSK---ELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVT  247 (249)
T ss_pred             CCccCCCCCCCCCCceEeeEEchhhhccc---chHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEE
Confidence            99999999999999999999999987653   56899999999999999999999987543         4688874

>PRK05429 gamma-glutamyl kinase; Provisional

Probab=99.85  E-value=2.4e-20  Score=180.71  Aligned_cols=193  Identities=19%  Similarity=0.235  Sum_probs=146.3

Q ss_pred             hhHHHHHHHHHHHHhhhc---------C-------------C--CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEc
Q 020431           11 LSYEFIRSTYNFLSNVDS---------G-------------H--ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD   66 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~-------------~--~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~   66 (326)
                      |+.++++...+++.++..         +             +  ..-...+.+.|.||..+++++...|+++|+++..+ 
T Consensus        27 l~~~~i~~la~~I~~l~~~g~~vViV~sGai~~g~~~l~l~~~~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~qi-  105 (372)
T PRK05429         27 LDRARIAELARQIAALRAAGHEVVLVSSGAVAAGRERLGLPERPKTLAEKQAAAAVGQSRLMQAYEELFARYGITVAQI-  105 (372)
T ss_pred             cCHHHHHHHHHHHHHHHHCCCeEEEEcccHhhhhHhhcCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEEEE-
Confidence            667778777777665442         1             0  12235578889999999999999999999997653 


Q ss_pred             ccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecC-ccccCCCCCcccccCCcchHHHHHHHHhhccceEEEe
Q 020431           67 TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG-FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW  145 (326)
Q Consensus        67 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~G-fi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~  145 (326)
                          + .+.+.+.. ...+....+.++.+++  .+.|||++. +...+     ..+++|++|++|+++|.+++|+.++|+
T Consensus       106 ----l-~t~~d~~~-~~~~ln~~~~i~~Ll~--~g~IPVi~~nd~v~~-----~~l~~gd~D~~Aa~lA~~l~Ad~Liil  172 (372)
T PRK05429        106 ----L-LTRDDLED-RERYLNARNTLRTLLE--LGVVPIINENDTVAT-----DEIKFGDNDTLSALVANLVEADLLILL  172 (372)
T ss_pred             ----E-eehhHhhh-hhHhhhHHHHHHHHHH--CCCEEEEcCCCccce-----ecccccChHHHHHHHHHHcCCCEEEEe
Confidence                2 22222211 1122233577888887  889999963 21111     125678999999999999999999999


Q ss_pred             eccCcccccCCCCCCCCeEEeeecH--HHHHHHhh-----cCCcccch--hhHHHHHhCCCCEEEEeccCC---------
Q 020431          146 TDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHP--RTIIPVMRYDIPIVIRNIFNL---------  207 (326)
Q Consensus       146 tDV~Gv~~~dP~~~~~a~~i~~ls~--~e~~~l~~-----~g~~v~~~--~a~~~a~~~~I~v~I~n~~~~---------  207 (326)
                      |||||||++||+.+|++++++++++  +|+.+++.     .|+++|+|  .++..+.++|++++|.|+..+         
T Consensus       173 TDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g  252 (372)
T PRK05429        173 TDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAG  252 (372)
T ss_pred             cCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcC
Confidence            9999999999999999999999998  67888853     67889999  689999999999999998654         


Q ss_pred             CCCceEEeCC
Q 020431          208 SVPGIMICRP  217 (326)
Q Consensus       208 ~~~GT~I~~~  217 (326)
                      +..||.|.+.
T Consensus       253 ~~~GT~i~~~  262 (372)
T PRK05429        253 EAVGTLFLPQ  262 (372)
T ss_pred             CCCCEEEeeC
Confidence            2469999865

>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.85  E-value=2.7e-20  Score=168.20  Aligned_cols=138  Identities=22%  Similarity=0.228  Sum_probs=113.0

Q ss_pred             hHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccC
Q 020431           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (326)
Q Consensus        34 ~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~  113 (326)
                      ...|.+...+++++++++...+. +|++++.+                  +.    +.+.++++  .+.|||++||++  
T Consensus        61 ~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~------------------~~----~~~~~~l~--~g~vpv~~G~~~--  113 (221)
T cd04253          61 AFLDEIGIMATRLNARLLIAALG-DAYPPVPT------------------SY----EEALEAMF--TGKIVVMGGTEP--  113 (221)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCC------------------CH----HHHHHHHH--cCCeEEEECCCC--
Confidence            34566666778888888777776 66654322                  12    45667777  789999999964  


Q ss_pred             CCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhc-----CC-cccchh
Q 020431          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-----GA-NVLHPR  187 (326)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~-----g~-~v~~~~  187 (326)
                        + .+      +|++|+++|..++|+.+++||||||||++||+.+|+|+++++++++|+.+++..     |+ .++|+.
T Consensus       114 --~-~s------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~  184 (221)
T cd04253         114 --G-QS------TDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPL  184 (221)
T ss_pred             --C-Cc------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHH
Confidence              2 22      499999999999999999999999999999999999999999999999999765     44 578999


Q ss_pred             hHHHHHhCCCCEEEEeccCC
Q 020431          188 TIIPVMRYDIPIVIRNIFNL  207 (326)
Q Consensus       188 a~~~a~~~~I~v~I~n~~~~  207 (326)
                      +++++.++|++++|.|+.+|
T Consensus       185 a~~~~~~~gi~~~I~~g~~p  204 (221)
T cd04253         185 AAKIIERSGIKTIVVDGRDP  204 (221)
T ss_pred             HHHHHHHCCCeEEEECCCCc
Confidence            99999999999999998754

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi

>TIGR01027 proB glutamate 5-kinase

Probab=99.84  E-value=3.2e-20  Score=179.18  Aligned_cols=193  Identities=17%  Similarity=0.236  Sum_probs=145.7

Q ss_pred             hhHHHHHHHHHHHHhhhc---------C------------C---CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEc
Q 020431           11 LSYEFIRSTYNFLSNVDS---------G------------H---ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD   66 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~------------~---~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~   66 (326)
                      ++.++|+...+++.++..         +            +   ..-..++.+.+.|+.++.+++...|.++|+++..  
T Consensus        19 ~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~~g~~~lg~~~~~~~l~~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~aq--   96 (363)
T TIGR01027        19 LDRSHIAELVEQVAALHAAGHEVVIVSSGAIAAGFEALGLPERPKTLAEKQALAAVGQVRLMQLYEQLFSQYGIKVAQ--   96 (363)
T ss_pred             cCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHhcCccccCCCCCccchHHHHHHHHhChHHHHHHHHHHHHHcCCeEEE--
Confidence            677778777777765443         0            0   1113567889999999999999999999998633  


Q ss_pred             ccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEec-CccccCCCCCcccccCCcchHHHHHHHHhhccceEEEe
Q 020431           67 TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW  145 (326)
Q Consensus        67 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~-Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~  145 (326)
                         +++ +.+.+.+ +..+...+..+..+++  .+.|||++ ++...     .+.+++|++|++|+++|.+++|+.++|+
T Consensus        97 ---ill-t~~d~~~-~~~~lna~~~i~~Ll~--~g~iPVi~end~v~-----~~~l~~gd~D~lAa~lA~~l~Ad~liil  164 (363)
T TIGR01027        97 ---ILL-TRADFSD-RERYLNARNTLEALLE--LGVVPIINENDTVA-----TEEIKFGDNDTLSALVAILVGADLLVLL  164 (363)
T ss_pred             ---EEE-eccchhh-HHHHHHHHHHHHHHHh--CCCEEEEeCCCcee-----eeecCcCChHHHHHHHHHHcCCCEEEEE
Confidence               333 3322211 1123345577888887  78999996 33211     1336778899999999999999999999


Q ss_pred             eccCcccccCCCCCCCCeEEeeecHH--HHHHHh-----hcCCcccchh--hHHHHHhCCCCEEEEeccCCC--------
Q 020431          146 TDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMS-----YFGANVLHPR--TIIPVMRYDIPIVIRNIFNLS--------  208 (326)
Q Consensus       146 tDV~Gv~~~dP~~~~~a~~i~~ls~~--e~~~l~-----~~g~~v~~~~--a~~~a~~~~I~v~I~n~~~~~--------  208 (326)
                      |||||||++||+.+|+|++++++++.  +..+++     ..|+++|+|+  |+..|.++|++++|.|+..|+        
T Consensus       165 TDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g  244 (363)
T TIGR01027       165 TDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEG  244 (363)
T ss_pred             eCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcC
Confidence            99999999999999999999999864  455564     3678899997  889999999999999987543        


Q ss_pred             -CCceEEeCC
Q 020431          209 -VPGIMICRP  217 (326)
Q Consensus       209 -~~GT~I~~~  217 (326)
                       ..||.|.+.
T Consensus       245 ~~~GT~i~~~  254 (363)
T TIGR01027       245 APVGTLFHAQ  254 (363)
T ss_pred             CCCcEEEeeC
Confidence             469999764

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.

>TIGR02076 pyrH_arch uridylate kinase, putative

Probab=99.83  E-value=1.2e-19  Score=163.87  Aligned_cols=140  Identities=23%  Similarity=0.241  Sum_probs=112.9

Q ss_pred             hHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccC
Q 020431           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (326)
Q Consensus        34 ~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~  113 (326)
                      ...|.+...+++++++++...|...++++...+                  .    ....+.+.  .+.+||++||++  
T Consensus        60 ~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~------------------~----~~~~~~l~--~g~ipv~~G~~~--  113 (221)
T TIGR02076        60 TFLDEIGIDATRLNAMLLIAALGDDAYPKVPEN------------------F----EEALEAMS--LGKIVVMGGTHP--  113 (221)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCC------------------H----HHHHHHHH--cCCEEEEcCCCC--
Confidence            345667777899999998888877777654321                  1    22344555  678999999862  


Q ss_pred             CCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhh---cCCc---ccchh
Q 020431          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FGAN---VLHPR  187 (326)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~---~g~~---v~~~~  187 (326)
                        | ++      +|++|+++|.+++|+++++||||||||++||+++|+|+++++++++|+.+++.   +|++   .+++.
T Consensus       114 --~-~s------~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~  184 (221)
T TIGR02076       114 --G-HT------TDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPL  184 (221)
T ss_pred             --C-CC------cHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHH
Confidence              2 22      49999999999999999999999999999999999999999999999999876   3333   67889


Q ss_pred             hHHHHHhCCCCEEEEeccCCC
Q 020431          188 TIIPVMRYDIPIVIRNIFNLS  208 (326)
Q Consensus       188 a~~~a~~~~I~v~I~n~~~~~  208 (326)
                      +++.+.+.+++++|.|+.+|+
T Consensus       185 a~~~~~~~~i~v~I~~g~~~~  205 (221)
T TIGR02076       185 AAKIIERSKIRTIVVNGRDPE  205 (221)
T ss_pred             HHHHHHHCCCcEEEECCCCcc
Confidence            999999999999999987553

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.

>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms

Probab=99.82  E-value=8.7e-20  Score=167.97  Aligned_cols=145  Identities=15%  Similarity=0.191  Sum_probs=121.2

Q ss_pred             HHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchH
Q 020431           49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDF  128 (326)
Q Consensus        49 ~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~  128 (326)
                      ..+++.|.++|+++.++++.+++....++.  ..++.    +.++++++  .+.|||++|+++.+.+|++.+++   +|+
T Consensus        83 ~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~--~~~~~----~~l~~ll~--~g~iPVi~~~~~~~~~~~~~~~~---~D~  151 (252)
T cd04241          83 SIVVDALLEAGVPAVSVPPSSFFVTENGRI--VSFDL----EVIKELLD--RGFVPVLHGDVVLDEGGGITILS---GDD  151 (252)
T ss_pred             HHHHHHHHHCCCCeEEEChHHeEEecCCee--eeecH----HHHHHHHh--CCCEEEEcCCeEecCCCCeEEeC---hHH
Confidence            467889999999999999999866543211  23444    88999998  89999999998888888777664   899


Q ss_pred             HHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhc-------CCcccchh--hHHHHHhCCCCE
Q 020431          129 SAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-------GANVLHPR--TIIPVMRYDIPI  199 (326)
Q Consensus       129 ~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~-------g~~v~~~~--a~~~a~~~~I~v  199 (326)
                      +|+.+|.+|+|++++|||||||||++||   |+++++++++++|+.++...       ..++|.++  ++..+.++|+++
T Consensus       152 ~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v  228 (252)
T cd04241         152 IVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEV  228 (252)
T ss_pred             HHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeE
Confidence            9999999999999999999999999999   89999999999888888642       35688885  777778899999


Q ss_pred             EEEeccCC
Q 020431          200 VIRNIFNL  207 (326)
Q Consensus       200 ~I~n~~~~  207 (326)
                      +|.++.++
T Consensus       229 ~I~~g~~~  236 (252)
T cd04241         229 YIFNGDKP  236 (252)
T ss_pred             EEEeCCCH
Confidence            99998754

Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional

Probab=99.82  E-value=1.2e-19  Score=168.51  Aligned_cols=169  Identities=14%  Similarity=0.201  Sum_probs=133.5

Q ss_pred             hhHHhH-hhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCC-------------------CCCC-CCCCchhhHHH
Q 020431           33 ESFTDF-VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-------------------SSNQ-VDPDFSESEKR   91 (326)
Q Consensus        33 ~~~~d~-i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~-------------------~~g~-~~~~~~~~~~~   91 (326)
                      ++..+. ..+.| +++..++ +.|.++|++|+++++.++.+++..                   ..|+ .+++.    +.
T Consensus        68 ~~~l~~~~~a~~-~ln~~lv-~~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~----~~  141 (268)
T PRK14058         68 RETLEVFIMAMA-LINKQLV-ERLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNT----DL  141 (268)
T ss_pred             HHHHHHHHHHHH-HHHHHHH-HHHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECH----HH
Confidence            344444 45778 7777775 599999999999999987554211                   1111 23444    88


Q ss_pred             HHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHH
Q 020431           92 LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ  171 (326)
Q Consensus        92 i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~  171 (326)
                      ++.+++  .+.|||++|+ +.+..|+..++   ++|++|+.+|.+|+|++++|||||||||++||.   +++++++++++
T Consensus       142 i~~ll~--~g~iPVi~~~-~~~~~g~~~~i---~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~  212 (268)
T PRK14058        142 LKLLLK--AGYLPVVAPP-ALSEEGEPLNV---DGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPE  212 (268)
T ss_pred             HHHHHH--CCCEEEEeCc-eECCCCcEEec---CHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHH
Confidence            999998  8899999997 55677887766   489999999999999999999999999999984   57899999999


Q ss_pred             HHHHHhhcCCcccchh--hHHHHHhCCC-CEEEEeccCCC-------CCceEEeC
Q 020431          172 EAWEMSYFGANVLHPR--TIIPVMRYDI-PIVIRNIFNLS-------VPGIMICR  216 (326)
Q Consensus       172 e~~~l~~~g~~v~~~~--a~~~a~~~~I-~v~I~n~~~~~-------~~GT~I~~  216 (326)
                      |+.++.....++|.|+  ++..+.++|+ +++|.++..++       ..||+|.+
T Consensus       213 e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~GT~I~~  267 (268)
T PRK14058        213 EAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGEGTVIVN  267 (268)
T ss_pred             HHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCCceEEec
Confidence            9999887778889885  6777788899 79999886553       35898864

>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis

Probab=99.80  E-value=3.2e-19  Score=166.67  Aligned_cols=151  Identities=15%  Similarity=0.205  Sum_probs=123.4

Q ss_pred             chHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCC--------------C-CCCCchhhHHHHHHHhhcCCCcEEEec
Q 020431           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN--------------Q-VDPDFSESEKRLEKWFSQSPSNTIIAT  107 (326)
Q Consensus        43 GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g--------------~-~~~~~~~~~~~i~~~l~~~~~~ipVv~  107 (326)
                      |+ ++.. +++.|+++|++++++++.+.++++.++++              . ..++.    +.++++++  .+.|||++
T Consensus        93 g~-ln~~-l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~----~~i~~ll~--~g~IPVi~  164 (279)
T cd04250          93 GK-VNKE-IVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNP----ELLETLLE--AGYIPVIA  164 (279)
T ss_pred             Cc-hHHH-HHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcH----HHHHHHHH--CCCeEEEc
Confidence            74 5555 59999999999999999987666654433              1 12333    88899998  88999999


Q ss_pred             CccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhc--CCcccc
Q 020431          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF--GANVLH  185 (326)
Q Consensus       108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~--g~~v~~  185 (326)
                      | ++.++.|++.+++   +|.+|+.+|.+|+|++++|||||||||++||.   +++++++++++|+.+++..  ..++|.
T Consensus       165 ~-~~~~~~g~~~~~~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~  237 (279)
T cd04250         165 P-VGVGEDGETYNIN---ADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMI  237 (279)
T ss_pred             C-CccCCCCcEEEeC---HHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchH
Confidence            9 5888888888774   89999999999999999999999999999985   4799999999999999753  457888


Q ss_pred             hh--hHHHHHhCCCC-EEEEeccCCC
Q 020431          186 PR--TIIPVMRYDIP-IVIRNIFNLS  208 (326)
Q Consensus       186 ~~--a~~~a~~~~I~-v~I~n~~~~~  208 (326)
                      ++  ++..+.+.|++ ++|.|+..|+
T Consensus       238 ~Kl~~a~~a~~~g~~~v~I~~g~~~~  263 (279)
T cd04250         238 PKVEACIEALEGGVKAAHIIDGRVPH  263 (279)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence            85  66677778886 9999887553

In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A

>PRK00942 acetylglutamate kinase; Provisional

Probab=99.78  E-value=1.5e-18  Score=162.41  Aligned_cols=160  Identities=19%  Similarity=0.220  Sum_probs=126.5

Q ss_pred             HhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCC---------CC-CCCCchhhHHHHHHHhhcCCCcEEEec
Q 020431           38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS---------NQ-VDPDFSESEKRLEKWFSQSPSNTIIAT  107 (326)
Q Consensus        38 ~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~---------g~-~~~~~~~~~~~i~~~l~~~~~~ipVv~  107 (326)
                      .+++ | +++. .+.+.|+++|++++.+++.+..+++...+         |. ..++.    +.++++++  .|.|||++
T Consensus        98 ~a~~-G-~l~~-~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~----~~l~~ll~--~g~vpVv~  168 (283)
T PRK00942         98 MVLA-G-KVNK-ELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNP----ALLEALLE--AGYIPVIS  168 (283)
T ss_pred             HHHc-C-chHH-HHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECH----HHHHHHHH--CCCEEEEc
Confidence            3444 7 4554 45699999999999999998877765333         21 12333    88999998  88999999


Q ss_pred             CccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC--Ccccc
Q 020431          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLH  185 (326)
Q Consensus       108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g--~~v~~  185 (326)
                      + ++.+.+|++++++   +|++|+.||.+|+|++++|||||||||++      +++++++++++|+.+++..+  .++|.
T Consensus       169 ~-~~~~~~g~~~~l~---~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~  238 (283)
T PRK00942        169 P-IGVGEDGETYNIN---ADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMI  238 (283)
T ss_pred             C-cEECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchH
Confidence            7 5889999998885   89999999999999999999999999986      47899999999999998654  46777


Q ss_pred             hh--hHHHHHhCCC-CEEEEeccCC----------CCCceEEeC
Q 020431          186 PR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICR  216 (326)
Q Consensus       186 ~~--a~~~a~~~~I-~v~I~n~~~~----------~~~GT~I~~  216 (326)
                      |+  ++..+.++|+ +++|.|+..+          +..||.|.+
T Consensus       239 ~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~  282 (283)
T PRK00942        239 PKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP  282 (283)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence            75  5666667887 5999987544          346888865

>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis

Probab=99.78  E-value=1.1e-18  Score=160.68  Aligned_cols=156  Identities=17%  Similarity=0.182  Sum_probs=121.0

Q ss_pred             hHHhHhhcc-chHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCC-------C-CCCCchhhHHHHHHHhhcCCCcEE
Q 020431           34 SFTDFVVGH-GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------Q-VDPDFSESEKRLEKWFSQSPSNTI  104 (326)
Q Consensus        34 ~~~d~i~~~-GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g-------~-~~~~~~~~~~~i~~~l~~~~~~ip  104 (326)
                      ...+.+.+. ++.++.+++...+ ++|++++++++.+.++++..+++       . .+++.    +.++++++  .+.||
T Consensus        67 ~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~----~~l~~ll~--~g~ip  139 (252)
T cd04249          67 EQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDP----SLLNDLLK--AGFLP  139 (252)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCCCCcccceEEEcH----HHHHHHHH--CCCEE
Confidence            344454443 6677777766665 89999999999988666543322       1 12344    88999998  88999


Q ss_pred             EecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC--Cc
Q 020431          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--AN  182 (326)
Q Consensus       105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g--~~  182 (326)
                      |++|+ +.+++|++++++   +|++|+.+|.+|+|+ ++|||||||||+.||      +++++++++|+.++...|  ..
T Consensus       140 Vi~~~-g~~~~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~g  208 (252)
T cd04249         140 IISSI-GADDQGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITD  208 (252)
T ss_pred             EECCC-EECCCCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcC
Confidence            99985 889999999886   899999999999999 689999999998765      688999999999997654  35


Q ss_pred             ccch---hhHHHHHhCCCCEEEEeccCC
Q 020431          183 VLHP---RTIIPVMRYDIPIVIRNIFNL  207 (326)
Q Consensus       183 v~~~---~a~~~a~~~~I~v~I~n~~~~  207 (326)
                      +|.+   .|++.+.+.+++++|.++..+
T Consensus       209 Gm~~kl~~a~~~~~~~~~~v~I~~g~~~  236 (252)
T cd04249         209 GMIVKVNAALDAAQSLRRGIDIASWQYP  236 (252)
T ss_pred             CcHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            5655   466777777789999988654

There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).

>TIGR00761 argB acetylglutamate kinase

Probab=99.78  E-value=1.3e-18  Score=158.31  Aligned_cols=141  Identities=16%  Similarity=0.246  Sum_probs=114.4

Q ss_pred             chHHHHHHHHHHHHHcCCceEEEcccceeeccCCCC--------CC-CCCCchhhHHHHHHHhhcCCCcEEEecCccccC
Q 020431           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS--------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (326)
Q Consensus        43 GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~--------g~-~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~  113 (326)
                      +++++..+ .+.|+++|++++++++.+..+++...+        |. ..++.    +.++++++  .+.|||++|+ +.+
T Consensus        75 ~g~~~~~i-~~~L~~~G~~a~~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~----~~i~~~l~--~g~IPVi~~~-~~~  146 (231)
T TIGR00761        75 IGQVNKEL-VALLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNK----ALLEALLK--AGYIPVISSL-ALT  146 (231)
T ss_pred             hcchHHHH-HHHHHhCCCCcccccCCCCCEEEEEECCCccCCcccceEEEcH----HHHHHHHH--CCCeEEECCC-ccC
Confidence            44566544 569999999999999998755543221        11 12333    88999998  8899999995 888


Q ss_pred             CCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC--Ccccchh--hH
Q 020431          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TI  189 (326)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g--~~v~~~~--a~  189 (326)
                      .+|++++++   +|++|+.||.+|+|++++|||||||||++||+     +++++++++|+.++++.|  .++|.++  ++
T Consensus       147 ~~g~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a  218 (231)
T TIGR00761       147 AEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAA  218 (231)
T ss_pred             CCCcEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHH
Confidence            889999885   89999999999999999999999999999874     799999999999999866  5789885  67


Q ss_pred             HHHHhCCCCE
Q 020431          190 IPVMRYDIPI  199 (326)
Q Consensus       190 ~~a~~~~I~v  199 (326)
                      ..+.+.|++-
T Consensus       219 ~~a~~~gv~~  228 (231)
T TIGR00761       219 LEALRGGVKS  228 (231)
T ss_pred             HHHHHcCCCE
Confidence            7777788863

This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.

>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]

Probab=99.77  E-value=1.9e-17  Score=155.18  Aligned_cols=194  Identities=15%  Similarity=0.247  Sum_probs=154.7

Q ss_pred             hhhHHHHHHHHHHHHhhhcC------------------------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEE
Q 020431           10 ELSYEFIRSTYNFLSNVDSG------------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWM   65 (326)
Q Consensus        10 ~~~~~~i~~~~~~l~~~~~~------------------------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l   65 (326)
                      .|+..+++.+..++.++...                        +..-+.+-.+.|.|+....+.+...|..+|+++   
T Consensus        24 ~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v---  100 (369)
T COG0263          24 GLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKRPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKV---  100 (369)
T ss_pred             CcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCCCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCee---
Confidence            47788888888888887751                        222255667889999999999999999999964   


Q ss_pred             cccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCccc--ccCCcchHHHHHHHHhhccceEE
Q 020431           66 DTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LKRDGSDFSAAIMGALLRAHQVT  143 (326)
Q Consensus        66 ~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~--lgrggsD~~A~~lA~~l~a~~~~  143 (326)
                        .++.++.++ +.+ +..|.+.+..+..+++  .|.|||+      |+|..+.+  +..|++|.++++.|...+||.++
T Consensus       101 --~QiLLTr~D-~~~-r~ry~Nar~Tl~~Ll~--~gvVPII------NENDtva~~EikfGDND~LsA~VA~lv~ADlLv  168 (369)
T COG0263         101 --GQILLTRDD-FSD-RRRYLNARNTLSALLE--LGVVPII------NENDTVATEEIKFGDNDTLSALVAILVGADLLV  168 (369)
T ss_pred             --eEEEeehhh-hhh-HHHHHHHHHHHHHHHH--CCceeee------cCCCceeeeeeeecCCchHHHHHHHHhCCCEEE
Confidence              455444332 211 2245667788999998  8999998      67766655  55678899999999999999999


Q ss_pred             EeeccCcccccCCCCCCCCeEEeeecH--HHHHHHhh-----cCCcccchh--hHHHHHhCCCCEEEEeccCCC------
Q 020431          144 IWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHPR--TIIPVMRYDIPIVIRNIFNLS------  208 (326)
Q Consensus       144 ~~tDV~Gv~~~dP~~~~~a~~i~~ls~--~e~~~l~~-----~g~~v~~~~--a~~~a~~~~I~v~I~n~~~~~------  208 (326)
                      ++||+||+||+||+.+|+|+++++++-  .|...++.     .|.++|..|  |++.|.++|++++|.++.+++      
T Consensus       169 lLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~  248 (369)
T COG0263         169 LLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDAL  248 (369)
T ss_pred             EEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHH
Confidence            999999999999999999999998863  46767764     678899885  999999999999999998754      


Q ss_pred             ---CCceEEeCCC
Q 020431          209 ---VPGIMICRPP  218 (326)
Q Consensus       209 ---~~GT~I~~~~  218 (326)
                         ..||.+.+..
T Consensus       249 ~~~~~GT~F~~~~  261 (369)
T COG0263         249 EGEAVGTLFEPQA  261 (369)
T ss_pred             hCCCCccEEecCC
Confidence               4699998653

>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like

Probab=99.76  E-value=4.6e-18  Score=156.91  Aligned_cols=147  Identities=16%  Similarity=0.205  Sum_probs=118.4

Q ss_pred             chHHHHHHHHHHHHHcCCceEEEcccceeeccCCCC----------CC-CCCCchhhHHHHHHHhhcCCCcEEEecCccc
Q 020431           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS----------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (326)
Q Consensus        43 GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~----------g~-~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~  111 (326)
                      | +++.. +++.|+++|++++++++.+..++++.+.          |. ..++.    +.++.+++  .+.|||++| ++
T Consensus        77 g-~ln~~-i~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~----~~l~~ll~--~g~ipVv~~-~~  147 (256)
T cd04238          77 G-KVNKE-LVSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNP----ELLETLLE--AGYIPVIAP-IA  147 (256)
T ss_pred             C-chHHH-HHHHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEECH----HHHHHHHH--CCCEEEECC-cE
Confidence            6 55555 4999999999999999999866655332          22 13444    88899998  889999999 58


Q ss_pred             cCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhc--CCcccchh--
Q 020431          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF--GANVLHPR--  187 (326)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~--g~~v~~~~--  187 (326)
                      .++.|++++++   +|++|+.+|..|+|++++|||||+|||++      +++++++++++|+.++...  ..+.|.|+  
T Consensus       148 ~~~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~  218 (256)
T cd04238         148 VDEDGETYNVN---ADTAAGAIAAALKAEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVE  218 (256)
T ss_pred             ECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHH
Confidence            88889988875   89999999999999999999999999987      3789999999999998753  35788785  


Q ss_pred             hHHHHHhCCC-CEEEEeccCC
Q 020431          188 TIIPVMRYDI-PIVIRNIFNL  207 (326)
Q Consensus       188 a~~~a~~~~I-~v~I~n~~~~  207 (326)
                      ++..+.+.|+ +++|.|+..+
T Consensus       219 ~a~~~~~~g~~~v~I~~g~~~  239 (256)
T cd04238         219 AALEALEGGVRKVHIIDGRVP  239 (256)
T ss_pred             HHHHHHHhCCCEEEEeCCCCC
Confidence            5666666776 5999987654

Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>PLN02512 acetylglutamate kinase

Probab=99.75  E-value=1.6e-17  Score=157.26  Aligned_cols=155  Identities=17%  Similarity=0.205  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHcCCceEEEcccceeeccCCCC---------CC-CCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCC
Q 020431           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSS---------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (326)
Q Consensus        48 ~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~---------g~-~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~  117 (326)
                      .+.+++.|+++|++++++++.+..+++..++         |. ..++.    +.++.+++  .+.|||++|+ +.++.|+
T Consensus       129 n~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~----~~i~~lL~--~g~IPVi~~~-~~d~~g~  201 (309)
T PLN02512        129 NKSLVSLINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDP----TVLRPLVD--DGHIPVIATV-AADEDGQ  201 (309)
T ss_pred             HHHHHHHHHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecCH----HHHHHHHh--CCCEEEEeCc-eECCCCC
Confidence            5568899999999999999988654543322         11 13444    88999998  8999999996 8888888


Q ss_pred             cccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC--Ccccchh--hHHHHH
Q 020431          118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TIIPVM  193 (326)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g--~~v~~~~--a~~~a~  193 (326)
                      ..++   ++|.+|+.||.+|+|++++|||||||||+++|   ++++++++++++|+.++...|  .++|.||  ++..+.
T Consensus       202 ~~~i---~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~  275 (309)
T PLN02512        202 AYNI---NADTAAGEIAAALGAEKLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSL  275 (309)
T ss_pred             Eecc---CHHHHHHHHHHHcCCCEEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            8877   48999999999999999999999999999864   347899999999999987543  5789886  556667


Q ss_pred             hCCCC-EEEEeccCCC----------CCceEEe
Q 020431          194 RYDIP-IVIRNIFNLS----------VPGIMIC  215 (326)
Q Consensus       194 ~~~I~-v~I~n~~~~~----------~~GT~I~  215 (326)
                      +.|++ ++|.++..++          ..||.|.
T Consensus       276 ~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~  308 (309)
T PLN02512        276 AQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT  308 (309)
T ss_pred             HcCCCEEEEecCCCCChHHHHHhcCCCCeeEEe
Confidence            78996 8999875442          3477774

>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC)

Probab=99.74  E-value=1.1e-17  Score=154.51  Aligned_cols=158  Identities=14%  Similarity=0.187  Sum_probs=123.2

Q ss_pred             hhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCC-------------------CCC-CCCCchhhHHHH
Q 020431           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS-------------------SNQ-VDPDFSESEKRL   92 (326)
Q Consensus        33 ~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~-------------------~g~-~~~~~~~~~~~i   92 (326)
                      ++..+.+....+.++..+ ++.|+++|++++++++.+..++..+.                   .|. ..++.    +.+
T Consensus        64 ~~~l~~~~~a~~~ln~~i-v~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~----~~i  138 (257)
T cd04251          64 KETLEVFVMVMGLINKKI-VARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNS----DLI  138 (257)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcH----HHH
Confidence            444455554447777775 55999999999999998875443221                   111 12344    889


Q ss_pred             HHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHH
Q 020431           93 EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE  172 (326)
Q Consensus        93 ~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e  172 (326)
                      +.+++  .+.|||++++ +.+.+|++.+++   +|++|+.+|.+|+|++++|||||+|||++       ++++++++++|
T Consensus       139 ~~ll~--~g~vpVi~~~-~~~~~G~~~~i~---~D~~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e  205 (257)
T cd04251         139 EALLD--AGYLPVVSPV-AYSEEGEPLNVD---GDRAAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSD  205 (257)
T ss_pred             HHHHh--CCCeEEEeCc-EECCCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHH
Confidence            99998  8999999887 667889988884   89999999999999999999999999963       78999999999


Q ss_pred             HHHHhhcCCcccchh--hHHHHHhCCCC-EEEEeccCCC
Q 020431          173 AWEMSYFGANVLHPR--TIIPVMRYDIP-IVIRNIFNLS  208 (326)
Q Consensus       173 ~~~l~~~g~~v~~~~--a~~~a~~~~I~-v~I~n~~~~~  208 (326)
                      +.++...-.++|.|+  ++..+.++|++ ++|.++..|+
T Consensus       206 ~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~  244 (257)
T cd04251         206 AESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADS  244 (257)
T ss_pred             HHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCcc
Confidence            999976566788885  77777888884 7888876543

This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).

>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

Probab=99.74  E-value=2.6e-17  Score=152.19  Aligned_cols=182  Identities=14%  Similarity=0.161  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHhhhcCCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEc------ccc-eeeccC--CCCCCCCC
Q 020431           13 YEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD------TRE-VLIVNP--TSSNQVDP   83 (326)
Q Consensus        13 ~~~i~~~~~~l~~~~~~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~------~~~-~~~~~~--~~~g~~~~   83 (326)
                      .+.|+...++|.++..+      .+.++.+|+--.+|....+..+.|++....+      ... ..+..+  ..+|...+
T Consensus        47 ~~~i~~la~~i~~~~~~------~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i  120 (262)
T cd04255          47 AEAVLPLVEEIVALRPE------HKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQNAEMLATLLAKHGGSKV  120 (262)
T ss_pred             HHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            56788888888887641      3566666666666643343445666554432      111 111111  11222111


Q ss_pred             CchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCc------chHHHHHHHHhhccceEEEeeccCcccccCCC
Q 020431           84 DFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG------SDFSAAIMGALLRAHQVTIWTDVDGVYSADPR  157 (326)
Q Consensus        84 ~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrgg------sD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~  157 (326)
                      - ....+.++++++  .+.|||++|+.+.+   ..++.+|+|      +|++|+++|..++|+++++||||||||++||+
T Consensus       121 ~-~~~~~~l~~lL~--~g~vPVi~g~~~~~---~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~  194 (262)
T cd04255         121 G-HGDLLQLPTFLK--AGRAPVISGMPPYG---LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPK  194 (262)
T ss_pred             c-cccHHHHHHHHH--CCCeEEEeCCcCCC---eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCC
Confidence            0 011257888888  89999999996533   223444444      89999999999999999999999999999999


Q ss_pred             CCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhC--CCCEEEEeccCC
Q 020431          158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY--DIPIVIRNIFNL  207 (326)
Q Consensus       158 ~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~--~I~v~I~n~~~~  207 (326)
                      .+|+|+++++++++|+.++.. +..+|...+...+...  .++++|.|+..|
T Consensus       195 ~~~~a~~i~~i~~~~~~~~~~-~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~  245 (262)
T cd04255         195 KNKKAEFIPEISAAELLKKDL-DDLVLERPVLDLLQNARHVKEVQIVNGLVP  245 (262)
T ss_pred             CCCCCeEccEeCHHHHHHHhc-CCCCCcHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            999999999999988877642 3335666666666533  358999998755

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>CHL00202 argB acetylglutamate kinase; Provisional

Probab=99.74  E-value=2.7e-17  Score=154.04  Aligned_cols=159  Identities=16%  Similarity=0.208  Sum_probs=126.0

Q ss_pred             cchHHHHHHHHHHHHHcCCceEEEcccceeeccCCC-----C---CC-CCCCchhhHHHHHHHhhcCCCcEEEecCcccc
Q 020431           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS-----S---NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (326)
Q Consensus        42 ~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~-----~---g~-~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~  112 (326)
                      .|+.  .+.+++.|.++|++|+++++.+..+++..+     +   |. .+++.    +.++.+++  .|.|||++|+ +.
T Consensus       101 ~g~l--n~~lv~~L~~~Gv~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~----~~i~~ll~--~g~iPVi~~~-~~  171 (284)
T CHL00202        101 AGKV--NKDLVGSINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDP----QLIDMLLE--KNYIPVIASV-AA  171 (284)
T ss_pred             hhHH--HHHHHHHHHhCCCCeeeeeeccCCEEEEEeCCCcccccceeEEecCH----HHHHHHHH--CCCEEEECCC-cc
Confidence            3666  778899999999999999999876553211     1   22 23455    88999998  8899999995 88


Q ss_pred             CCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC--Ccccchh--h
Q 020431          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--T  188 (326)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g--~~v~~~~--a  188 (326)
                      +..|++.+++   +|++|+.+|.+|+|++++|||||+|||+.+ . .| .+++++++++|+.++...|  .++|.|+  +
T Consensus       172 ~~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~-~-d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~a  245 (284)
T CHL00202        172 DHDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPGILADI-N-DP-NSLISTLNIKEARNLASTGIISGGMIPKVNC  245 (284)
T ss_pred             CCCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChhhcCCC-C-CC-CCccccccHHHHHHHHhcCCCCCCHHHHHHH
Confidence            8889988875   899999999999999999999999999842 1 12 3799999999999998654  5789885  6


Q ss_pred             HHHHHhCCCC-EEEEeccCCC----------CCceEEe
Q 020431          189 IIPVMRYDIP-IVIRNIFNLS----------VPGIMIC  215 (326)
Q Consensus       189 ~~~a~~~~I~-v~I~n~~~~~----------~~GT~I~  215 (326)
                      +..+.++|++ ++|.++..++          ..||.|.
T Consensus       246 a~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~  283 (284)
T CHL00202        246 CIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV  283 (284)
T ss_pred             HHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence            6777788987 7898876543          3578774

>PTZ00489 glutamate 5-kinase; Provisional

Probab=99.73  E-value=9.9e-17  Score=148.37  Aligned_cols=169  Identities=17%  Similarity=0.209  Sum_probs=124.0

Q ss_pred             HhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCC
Q 020431           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (326)
Q Consensus        36 ~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~  115 (326)
                      +....+.|.....+++...|.++|+++..+-     +... .+. ....+....+.++++++  .+.|||+.|. .....
T Consensus        72 ~qa~aaiGq~~L~~~y~~~f~~~~~~~aqiL-----lt~~-d~~-~~~~~~n~~~~l~~lL~--~g~VPIinen-d~~~~  141 (264)
T PTZ00489         72 KQALASMGQPLLMHMYYTELQKHGILCAQML-----LAAY-DLD-SRKRTINAHNTIEVLIS--HKVIPIINEN-DATAL  141 (264)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhCCCeEEEee-----eecc-ccc-cchhhHHHHHHHHHHHH--CCCEEEECCC-CCccc
Confidence            3445567776777889999999999874332     2221 111 11234556788999998  8999999883 11111


Q ss_pred             CCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeE---EeeecHHHHHHHh----hcCCcccchh-
Q 020431          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI---LRTLSYQEAWEMS----YFGANVLHPR-  187 (326)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~---i~~ls~~e~~~l~----~~g~~v~~~~-  187 (326)
                      .++.   .|++|.+|+++|..++|+.++++|||||||++||+.+|+|++   +++++.++.....    ..+.++|.++ 
T Consensus       142 ~e~~---~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl  218 (264)
T PTZ00489        142 HELV---FGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKL  218 (264)
T ss_pred             ceeE---eCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHH
Confidence            2332   256899999999999999999999999999999999999998   7788887664432    2457888885 


Q ss_pred             -hHHHHHhCCCCEEEEeccCCC-----------CCceEEeCC
Q 020431          188 -TIIPVMRYDIPIVIRNIFNLS-----------VPGIMICRP  217 (326)
Q Consensus       188 -a~~~a~~~~I~v~I~n~~~~~-----------~~GT~I~~~  217 (326)
                       ++..+.++|++++|.++.+++           ..||+|.+.
T Consensus       219 ~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~  260 (264)
T PTZ00489        219 QAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPR  260 (264)
T ss_pred             HHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeec
Confidence             889999999999999986432           258888653

>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis

Probab=99.73  E-value=5.8e-17  Score=151.58  Aligned_cols=168  Identities=18%  Similarity=0.219  Sum_probs=125.5

Q ss_pred             HhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecC-ccccCC
Q 020431           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG-FIASTP  114 (326)
Q Consensus        36 ~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~G-fi~~~~  114 (326)
                      +-.+.|.|+.-...++.+.|.++|+++     .++++ +.+.+.+.. .+....+.++.+++  .|.|||++| +...+.
T Consensus        94 ~qa~aa~gq~~L~~~y~~~f~~~~~~~-----~q~ll-t~~d~~~~~-~~~~~~~~l~~lL~--~g~iPVi~~nD~v~~~  164 (284)
T cd04256          94 GRACAAVGQSGLMALYEAMFTQYGITV-----AQVLV-TKPDFYDEQ-TRRNLNGTLEELLR--LNIIPIINTNDAVSPP  164 (284)
T ss_pred             HHHHHHcccHHHHHHHHHHHHHcCCcH-----HHeee-eccccccHH-HHHHHHHHHHHHHH--CCCEEEEeCCCccccc
Confidence            455778999999999999999999854     56644 433343211 12344577888888  899999986 332221


Q ss_pred             -----CCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhh-----cCCccc
Q 020431          115 -----DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGANVL  184 (326)
Q Consensus       115 -----~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~-----~g~~v~  184 (326)
                           +|+..+ .-+++|++|+++|..++|+.++++|||||||++||+ .|+++++++++..|..++..     .|.++|
T Consensus       165 ~~~~~~~~~~~-~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM  242 (284)
T cd04256         165 PEPDEDLQGVI-SIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGM  242 (284)
T ss_pred             ccccccccccc-cccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCc
Confidence                 122211 124689999999999999999999999999999997 58999999999877766632     357899


Q ss_pred             chh--hHHHHHhCCCCEEEEeccCCC---------CCceEE
Q 020431          185 HPR--TIIPVMRYDIPIVIRNIFNLS---------VPGIMI  214 (326)
Q Consensus       185 ~~~--a~~~a~~~~I~v~I~n~~~~~---------~~GT~I  214 (326)
                      .|+  ++..+.++|++++|.|+..|+         ..||+|
T Consensus       243 ~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~  283 (284)
T cd04256         243 EAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFF  283 (284)
T ss_pred             HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEe
Confidence            985  888899999999999986543         457776

G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=99.73  E-value=4.5e-17  Score=169.58  Aligned_cols=170  Identities=15%  Similarity=0.222  Sum_probs=126.0

Q ss_pred             HHh--HhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCc-cc
Q 020431           35 FTD--FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF-IA  111 (326)
Q Consensus        35 ~~d--~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gf-i~  111 (326)
                      ..|  .++|+||.++.+++..+|+++|+     +++++++ +++.++... .+....+.++.+++  .|.|||++|. ..
T Consensus        90 ~~~~qa~aa~Gq~~l~~~~~~~f~~~g~-----~~~qill-T~~~~~~~~-~~~~~~~~l~~ll~--~g~iPVv~~nd~v  160 (718)
T PLN02418         90 ELDGKACAAVGQSELMALYDTLFSQLDV-----TASQLLV-TDSDFRDPD-FRKQLSETVESLLD--LRVIPIFNENDAV  160 (718)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHcCC-----eEEEEEe-cHhHhcchh-HhHhHHHHHHHHHH--CCCEEEEcCCCCc
Confidence            456  78999999999999999999999     4455533 444443211 12345688888888  8899999773 11


Q ss_pred             cCCCCC----cccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHH-Hhh-----cCC
Q 020431          112 STPDNI----PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE-MSY-----FGA  181 (326)
Q Consensus       112 ~~~~g~----~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~-l~~-----~g~  181 (326)
                      .+..+.    ...+  +++|++|+++|..++|+.++|||||||||++||+ .++++++++++..+... +..     .+.
T Consensus       161 ~~~~~~~~~~~~~~--~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~t  237 (718)
T PLN02418        161 STRRAPYEDSSGIF--WDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGR  237 (718)
T ss_pred             cccccccccccCee--cCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCC
Confidence            111110    0011  3689999999999999999999999999999998 58999999997654332 221     357


Q ss_pred             cccch--hhHHHHHhCCCCEEEEeccCCC---------CCceEEeC
Q 020431          182 NVLHP--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMICR  216 (326)
Q Consensus       182 ~v~~~--~a~~~a~~~~I~v~I~n~~~~~---------~~GT~I~~  216 (326)
                      ++|.+  .++..+.++|++++|.|+..++         ..||.|.+
T Consensus       238 GGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  283 (718)
T PLN02418        238 GGMTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQ  283 (718)
T ss_pred             CCcHHHHHHHHHHHHCCCcEEEeCCCCcchHHHHhcCCCCceEecc
Confidence            89999  4888999999999999976542         46999975

>COG1608 Predicted archaeal kinase [General function prediction only]

Probab=99.68  E-value=2.6e-16  Score=140.44  Aligned_cols=153  Identities=18%  Similarity=0.200  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhh-HHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcc
Q 020431           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES-EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS  126 (326)
Q Consensus        48 ~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~-~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggs  126 (326)
                      +..+++.|.+.|+++++..|..+. +.+++.     .+  + -+.+.++++  .+.|||++|++..+.++.+.+++   +
T Consensus        83 ~~~V~~~l~~~Gv~av~~~P~s~~-~~~gr~-----~~--~~l~~i~~~l~--~gfvPvl~GDVv~d~~~g~~IiS---G  149 (252)
T COG1608          83 NSIVVDALLDAGVRAVSVVPISFS-TFNGRI-----LY--TYLEAIKDALE--KGFVPVLYGDVVPDDDNGYEIIS---G  149 (252)
T ss_pred             HHHHHHHHHhcCCccccccCccee-ecCCce-----ee--chHHHHHHHHH--cCCEeeeecceEEcCCCceEEEe---c
Confidence            456788999999999999998886 333332     22  2 278888998  89999999999999875555554   3


Q ss_pred             hHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC----Ccccch--hhHHHHHhCCCCEE
Q 020431          127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG----ANVLHP--RTIIPVMRYDIPIV  200 (326)
Q Consensus       127 D~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g----~~v~~~--~a~~~a~~~~I~v~  200 (326)
                      |.++.+||+.|+|++++|+|||||||+.||.++|+++.++++...++  +...+    +++|--  +++..+.+++.+++
T Consensus       150 DdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~--~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vy  227 (252)
T COG1608         150 DDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVA--LGGSGGTDVTGGIAKKLEALLEIARYGKEVY  227 (252)
T ss_pred             cHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhh--hcCcCcccchhhHHHHHHHHHHHHhcCceEE
Confidence            99999999999999999999999999999999999999887754422  32212    345544  35666667788899


Q ss_pred             EEeccCC---------CCCceEEe
Q 020431          201 IRNIFNL---------SVPGIMIC  215 (326)
Q Consensus       201 I~n~~~~---------~~~GT~I~  215 (326)
                      ++|+..|         +..||.|.
T Consensus       228 i~ng~~~~ni~~~l~G~~vGT~I~  251 (252)
T COG1608         228 IFNGNKPENIYRALRGENVGTRID  251 (252)
T ss_pred             EECCCCHHHHHHHhcCCCCceEec
Confidence            9998644         45688874

>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]

Probab=99.63  E-value=5.5e-15  Score=135.42  Aligned_cols=151  Identities=17%  Similarity=0.195  Sum_probs=125.5

Q ss_pred             ccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCC--------CC---C-CCCCchhhHHHHHHHhhcCCCcEEEecC
Q 020431           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS--------SN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATG  108 (326)
Q Consensus        41 ~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~--------~g---~-~~~~~~~~~~~i~~~l~~~~~~ipVv~G  108 (326)
                      ..|+.  .+-+++.|+++|.+|+.+++.|..+++..+        +|   + ..+|.    +.++.+++  .+.|||+++
T Consensus        79 l~G~v--Nk~iva~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~----~~i~~ll~--~~~IpViap  150 (265)
T COG0548          79 LGGTV--NKEIVARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNP----ELIERLLD--NGAIPVIAP  150 (265)
T ss_pred             HHHHH--HHHHHHHHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECH----HHHHHHHh--CCCceEEec
Confidence            34677  888999999999999999998865553221        22   1 23454    78899998  899999999


Q ss_pred             ccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC--Ccccch
Q 020431          109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP  186 (326)
Q Consensus       109 fi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g--~~v~~~  186 (326)
                      . +.+.+|++.++.   +|+.|+.+|.+|+|++++++|||+||++..|.  +  +++++++.+|+.++...|  ..+|.|
T Consensus       151 i-a~~~~G~~~Nvn---aD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~  222 (265)
T COG0548         151 I-AVDEDGETLNVN---ADTAAGALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIP  222 (265)
T ss_pred             c-eECCCCcEEeeC---HHHHHHHHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHH
Confidence            5 889999999985   89999999999999999999999999998754  2  799999999999999877  578999


Q ss_pred             h--hHHHHHhCCCC-EEEEeccCC
Q 020431          187 R--TIIPVMRYDIP-IVIRNIFNL  207 (326)
Q Consensus       187 ~--a~~~a~~~~I~-v~I~n~~~~  207 (326)
                      +  ++..|.+.|++ +.|.|+..+
T Consensus       223 Kv~~a~~A~~~Gv~~v~ii~g~~~  246 (265)
T COG0548         223 KVEAALEALESGVRRVHIISGRVP  246 (265)
T ss_pred             HHHHHHHHHHhCCCeEEEecCCCc
Confidence            5  78888899995 999887543

>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase

Probab=99.59  E-value=1.6e-14  Score=150.68  Aligned_cols=162  Identities=12%  Similarity=0.203  Sum_probs=116.4

Q ss_pred             hhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCc
Q 020431           39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIP  118 (326)
Q Consensus        39 i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~  118 (326)
                      +.+.|+..-..++...|.++++.     +.++++ +++.+... -.+...++.++.+++  .|.|||+.|      ++.+
T Consensus        88 ~aa~gq~~L~~~y~~~f~~~~i~-----~aQ~Ll-t~~d~~~~-~~~~~~~~~l~~lL~--~g~iPVin~------nD~V  152 (715)
T TIGR01092        88 CAAVGQSGLMALYETMFTQLDIT-----AAQILV-TDLDFRDE-QFRRQLNETVHELLR--MNVVPVVNE------NDAV  152 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCe-----eEEEEe-chhhcccH-HHHHHHHHHHHHHHH--CCCEEEEcC------CCcc
Confidence            44566665566666777776764     456644 43333211 112335678888888  889999975      2333


Q ss_pred             ccccCC---------cchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHH-HHhh-----cCCcc
Q 020431          119 TTLKRD---------GSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW-EMSY-----FGANV  183 (326)
Q Consensus       119 ~~lgrg---------gsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~-~l~~-----~g~~v  183 (326)
                      ++.+++         ++|++|+++|.+++|+.++++|||||||++||+ .|+++++++++..+.. ++..     .++++
T Consensus       153 ~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGG  231 (715)
T TIGR01092       153 STRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGG  231 (715)
T ss_pred             cccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCC
Confidence            334333         479999999999999999999999999999997 5899999999865444 3322     34678


Q ss_pred             cch--hhHHHHHhCCCCEEEEeccCC---------CCCceEEeC
Q 020431          184 LHP--RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (326)
Q Consensus       184 ~~~--~a~~~a~~~~I~v~I~n~~~~---------~~~GT~I~~  216 (326)
                      |.+  .++..+.++|++++|.|+..+         +..||.|.+
T Consensus       232 M~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~  275 (715)
T TIGR01092       232 MTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLFHE  275 (715)
T ss_pred             chHHHHHHHHHHHCCCeEEEeCCCCcchHHHHhcCCCCceEecc
Confidence            988  588899999999999998654         246999965

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.

>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals

Probab=99.51  E-value=1.4e-13  Score=127.60  Aligned_cols=140  Identities=14%  Similarity=0.133  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHcCCceEEEcccceeec-----cCCCCCC-CCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccc
Q 020431           48 AQMLAAVVRKNGIDCKWMDTREVLIV-----NPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL  121 (326)
Q Consensus        48 ~~~~~~~L~~~Gi~a~~l~~~~~~~~-----~~~~~g~-~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~l  121 (326)
                      ...++..|+++|++|+++.+...++.     +.+..|+ .++|.    +.|+.+++  .|.|||+++ ++.+.+|++.++
T Consensus       100 n~~Lv~~L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~~Vd~----~~I~~lL~--~g~IPVisp-lg~~~~G~~~Ni  172 (271)
T cd04236         100 CKTLVEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDT----ELLQWCLG--SGHIPLVCP-IGETSSGRSVSL  172 (271)
T ss_pred             HHHHHHHHHhCCCCeeeecCccceEEEEEcccCCccceEEEECH----HHHHHHHh--CCCeEEECC-ceECCCCCEEEE
Confidence            56788999999999999998753332     1112233 24666    88999998  899999999 589999999998


Q ss_pred             cCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecH-HHHHHHhhcC--Cccc---chh--hHHHHH
Q 020431          122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVL---HPR--TIIPVM  193 (326)
Q Consensus       122 grggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~-~e~~~l~~~g--~~v~---~~~--a~~~a~  193 (326)
                      +   +|..|+.+|.+|+|++++|+||++|||+.      +.+++++++. +|+.+|...|  .++|   -|+  ++..+.
T Consensus       173 N---aD~~A~~lA~aL~A~KLIfltd~~GV~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l  243 (271)
T cd04236         173 D---SSEVTTAIAKALQPIKVIFLNRSGGLRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNAL  243 (271)
T ss_pred             C---HHHHHHHHHHHcCCCEEEEEeCCcceECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhc
Confidence            5   89999999999999999999999999973      3579999995 9999998876  4677   553  666777


Q ss_pred             hCCCCEEEEe
Q 020431          194 RYDIPIVIRN  203 (326)
Q Consensus       194 ~~~I~v~I~n  203 (326)
                      ..|+++.|.+
T Consensus       244 ~~g~sv~I~~  253 (271)
T cd04236         244 PSMSSAVITS  253 (271)
T ss_pred             ccCCeEEEeC
Confidence            8899988887

Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).

>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP)

Probab=99.49  E-value=4.7e-13  Score=123.07  Aligned_cols=144  Identities=12%  Similarity=0.126  Sum_probs=107.8

Q ss_pred             ccchHHHHHHHHHHHHHcCCceEEEcccceeecc---CCCC---CC-CCCCchhhHHHHHHHhhcCCCcEEEecCccccC
Q 020431           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN---PTSS---NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (326)
Q Consensus        41 ~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~---~~~~---g~-~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~  113 (326)
                      +.++.  ...+++.|.++|++++++.+..+ ...   ...+   |. .++|.    +.++++++  .+.|||++|. +.+
T Consensus        72 al~~v--n~~iv~~l~~~g~~a~~l~~~~~-~a~~~~~~d~g~~G~v~~i~~----~~i~~~L~--~g~IPVi~p~-~~~  141 (248)
T cd04252          72 VFLEE--NLKLVEALERNGARARPITSGVF-EAEYLDKDKYGLVGKITGVNK----APIEAAIR--AGYLPILTSL-AET  141 (248)
T ss_pred             HHHHH--HHHHHHHHHhCCCCcccccCceE-EEEECcCccCCccCceeeECH----HHHHHHHH--CCCeEEECCc-eEC
Confidence            34544  55667889999999999998633 221   1112   22 24566    88999998  8999999996 778


Q ss_pred             CCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecH-HHHHHHhhcC--Ccccchh--h
Q 020431          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVLHPR--T  188 (326)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~-~e~~~l~~~g--~~v~~~~--a  188 (326)
                      ..|++.+++   +|..|+.+|.+|+|++++|+|||+|||+.      +.+++++++. +++.++...|  .++|.|+  +
T Consensus       142 ~~g~~~nvn---aD~~A~~lA~aL~a~kli~ltdv~GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~  212 (248)
T cd04252         142 PSGQLLNVN---ADVAAGELARVLEPLKIVFLNETGGLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKE  212 (248)
T ss_pred             CCCCEEEEC---HHHHHHHHHHHcCCCeEEEEECCcccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHH
Confidence            889888885   79999999999999999999999999964      3679999986 5777777654  4678885  4


Q ss_pred             HHHHHhC--CC-CEEEEe
Q 020431          189 IIPVMRY--DI-PIVIRN  203 (326)
Q Consensus       189 ~~~a~~~--~I-~v~I~n  203 (326)
                      +..+.+.  ++ .+.|.+
T Consensus       213 ~~~~~~~~~~~~~v~i~~  230 (248)
T cd04252         213 IKELLDTLPRSSSVSITS  230 (248)
T ss_pred             HHHHHHhCCCceEEEEEC
Confidence            5555555  43 466665

The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th

>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=99.49  E-value=1.4e-13  Score=100.96  Aligned_cols=65  Identities=25%  Similarity=0.376  Sum_probs=62.4

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      +++|+++|.+|. .+|+.+++|++|++.||++.|++|++|+.+|||+|++++.+++++.||+.|++
T Consensus         2 ~a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~av~~Lh~~f~~   66 (66)
T cd04915           2 VAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAALVE   66 (66)
T ss_pred             EEEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHHHHHHHHHHHhC
Confidence            689999999995 89999999999999999999999999999999999999999999999999873

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas

>PRK12353 putative amino acid kinase; Reviewed

Probab=99.49  E-value=5e-13  Score=126.77  Aligned_cols=121  Identities=21%  Similarity=0.228  Sum_probs=92.0

Q ss_pred             HHHHHHhhcCCCcEEEecCc--cc-cCCCCCccccc-CCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEE
Q 020431           90 KRLEKWFSQSPSNTIIATGF--IA-STPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gf--i~-~~~~g~~~~lg-rggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i  165 (326)
                      +.++.+++  .|.|||++|.  ++ .++++.+.+.. -+++|.+|+++|..++|++++++|||||||+++|+  |+++++
T Consensus       176 ~~i~~lL~--~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~~--~~a~~i  251 (314)
T PRK12353        176 EAIKTLVD--AGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFGK--PNQKKL  251 (314)
T ss_pred             HHHHHHHH--CCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCCC--CCCeEC
Confidence            78888888  8999999987  11 12333332200 24579999999999999999999999999997663  889999


Q ss_pred             eeecHHHHHHHhh---cCCcccchh--hH-HHH-HhCCCCEEEEecc------CCCCCceEEe
Q 020431          166 RTLSYQEAWEMSY---FGANVLHPR--TI-IPV-MRYDIPIVIRNIF------NLSVPGIMIC  215 (326)
Q Consensus       166 ~~ls~~e~~~l~~---~g~~v~~~~--a~-~~a-~~~~I~v~I~n~~------~~~~~GT~I~  215 (326)
                      ++++++|+.++..   .+.++|.|+  ++ +.+ .+.|++++|.+..      +.+ .||.|.
T Consensus       252 ~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~~~~i~~~l~g~-~GT~i~  313 (314)
T PRK12353        252 DEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITSLEKAKEALEGK-AGTVIV  313 (314)
T ss_pred             cCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECCchHHHHHhCCC-CCeEec
Confidence            9999999988864   456789885  44 445 4778999998743      223 688874

>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP

Probab=99.49  E-value=6.8e-13  Score=124.80  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=90.9

Q ss_pred             HHHHHHhhcCCCcEEEecCc----cccCCCCCccccc-CCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeE
Q 020431           90 KRLEKWFSQSPSNTIIATGF----IASTPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gf----i~~~~~g~~~~lg-rggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~  164 (326)
                      +.++.+++  .|.|||++|.    +.. .+|...+.. -.+.|++|++||..++|+.++++|||||||+.+|  .|++++
T Consensus       172 ~~I~~Ll~--~g~IpI~~GggGiPv~~-~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~  246 (308)
T cd04235         172 EAIKTLVD--NGVIVIAAGGGGIPVVR-EGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKA  246 (308)
T ss_pred             HHHHHHHH--CCCEEEEECCCccCEEE-cCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeE
Confidence            56777888  8999999986    222 223322211 2346999999999999999999999999999654  378999


Q ss_pred             EeeecHHHHHHHhh---cCCcccchh---hHHHHHhCCCCEEEEecc------CCCCCceEE
Q 020431          165 LRTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIF------NLSVPGIMI  214 (326)
Q Consensus       165 i~~ls~~e~~~l~~---~g~~v~~~~---a~~~a~~~~I~v~I~n~~------~~~~~GT~I  214 (326)
                      +++++++|+.++..   +++++|.||   |++.+.+.+.+++|.+..      +.+ .||.|
T Consensus       247 i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~~~~i~~aL~G~-~GT~I  307 (308)
T cd04235         247 LEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITSLENAEAALEGK-AGTVI  307 (308)
T ss_pred             cCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECCHHHHHHHHCCC-CCeEE
Confidence            99999999999875   557899997   667777777888887743      222 58876

Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=99.47  E-value=2.4e-13  Score=99.33  Aligned_cols=63  Identities=24%  Similarity=0.360  Sum_probs=60.6

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      ++|+++|. +...+++++++|++|+++||++.|++|++|+.++||+|++++.+++++.||++|+
T Consensus         2 a~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~av~~Lh~~f~   64 (65)
T cd04918           2 SIISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKSFF   64 (65)
T ss_pred             cEEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHh
Confidence            68999999 7778999999999999999999999999999999999999999999999999985

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=99.45  E-value=4.6e-13  Score=97.52  Aligned_cols=66  Identities=27%  Similarity=0.424  Sum_probs=63.3

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      +++|+++|.++.+.+++.+++|+.|+++||+++|++|++|+.+++|++++++..++++.||++|+.
T Consensus         1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~~~~a~~~lh~~~~~   66 (66)
T cd04919           1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIHTNLLE   66 (66)
T ss_pred             CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHhC
Confidence            579999999999999999999999999999999999999999999999999999999999999863

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=99.42  E-value=1e-12  Score=95.50  Aligned_cols=66  Identities=30%  Similarity=0.533  Sum_probs=63.1

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      +++|+++|.++.+.+++.+++|+.|+++||+++|++|++|+.+++|++++++.+++++.||++|+.
T Consensus         1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~~   66 (66)
T cd04922           1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFFL   66 (66)
T ss_pred             CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999999999988999999999999999999999999863

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts

Probab=99.41  E-value=1.6e-12  Score=121.59  Aligned_cols=147  Identities=16%  Similarity=0.187  Sum_probs=111.1

Q ss_pred             cchHHHHHHHHHHHHHcCCceEEEcccceeec-----cC--------CCC---CC-CCCCchhhHHHHHHHhhcCCCcEE
Q 020431           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIV-----NP--------TSS---NQ-VDPDFSESEKRLEKWFSQSPSNTI  104 (326)
Q Consensus        42 ~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~-----~~--------~~~---g~-~~~~~~~~~~~i~~~l~~~~~~ip  104 (326)
                      .|+.  ...+.+.|++ |++++++++..+...     ..        -.+   |. ..++.    +.++.+++  .|.+|
T Consensus        94 ~g~v--~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~----~~i~~lL~--~g~ip  164 (280)
T cd04237          94 AGAV--RLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDA----DAIRRQLD--QGSIV  164 (280)
T ss_pred             HHHH--HHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcH----HHHHHHHH--CCCEE
Confidence            4666  6667788855 998876654322111     10        011   21 12444    88999998  88999


Q ss_pred             EecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC---C
Q 020431          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG---A  181 (326)
Q Consensus       105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g---~  181 (326)
                      |+++- +.+.+|+..+++   +|..|+.||.+|+|++++|+|||||||+.      +++++++++.+|+.++...|   .
T Consensus       165 v~~~~-g~~~~g~~lnvn---aD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~  234 (280)
T cd04237         165 LLSPL-GYSPTGEVFNLS---MEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLT  234 (280)
T ss_pred             EECCc-eECCCCCEEeeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCC
Confidence            99884 888889998875   79999999999999999999999999973      46899999999999998755   4


Q ss_pred             cccchh--hHHHHHhCCC-CEEEEeccCC
Q 020431          182 NVLHPR--TIIPVMRYDI-PIVIRNIFNL  207 (326)
Q Consensus       182 ~v~~~~--a~~~a~~~~I-~v~I~n~~~~  207 (326)
                      .+|.||  ++..+.+.|+ +++|.++..+
T Consensus       235 ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~  263 (280)
T cd04237         235 NDTARLLQAAIEACRGGVPRVHLISYAED  263 (280)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            789996  6666777899 5999987654

Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>TIGR00746 arcC carbamate kinase

Probab=99.40  E-value=5.7e-12  Score=119.01  Aligned_cols=200  Identities=15%  Similarity=0.167  Sum_probs=128.8

Q ss_pred             hhHHHHHHHHHHHHhhhcC---------------------CC----ChhH-HhHhhccchHHHHHHHHHHHH----HcCC
Q 020431           11 LSYEFIRSTYNFLSNVDSG---------------------HA----TESF-TDFVVGHGELWSAQMLAAVVR----KNGI   60 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~---------------------~~----~~~~-~d~i~~~GE~~s~~~~~~~L~----~~Gi   60 (326)
                      .+.+.++....+|..+...                     +.    .+.. .|...|.|+-+-+.++...|+    ++|+
T Consensus        23 ~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A~~qg~lg~~~~~~l~~~l~~~g~  102 (310)
T TIGR00746        23 AQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGAMSQGMIGYMLQQALNNELPKRGM  102 (310)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHHhhHHHHHHHHHHHHHHHHHhcCC
Confidence            4466778888888877741                     01    1112 578888888888888888887    8886


Q ss_pred             ceEEEcc-cceeeccCC----------------------------------CCCC----CCCCchh--hHHHHHHHhhcC
Q 020431           61 DCKWMDT-REVLIVNPT----------------------------------SSNQ----VDPDFSE--SEKRLEKWFSQS   99 (326)
Q Consensus        61 ~a~~l~~-~~~~~~~~~----------------------------------~~g~----~~~~~~~--~~~~i~~~l~~~   99 (326)
                      +...... .+..+..++                                  .+|+    +++.+..  -.+.|+.+++  
T Consensus       103 ~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rrvv~sp~p~~iv~~~~I~~LL~--  180 (310)
T TIGR00746       103 EKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRRVVPSPRPKDIVEAETIKTLVE--  180 (310)
T ss_pred             CccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceEeecCCCchhhccHHHHHHHHH--
Confidence            4422211 111111111                                  1111    1111111  1267888888  


Q ss_pred             CCcEEEecCc--ccc-CCCCCcccc-cCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHH
Q 020431          100 PSNTIIATGF--IAS-TPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE  175 (326)
Q Consensus       100 ~~~ipVv~Gf--i~~-~~~g~~~~l-grggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~  175 (326)
                      .|.++|.+|-  ++. +++|.+... -.+++|.+|+.+|..++|+.++++|||||||+++  ..|+++++++++++|+.+
T Consensus       181 ~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~--~~p~a~~i~~it~~e~~~  258 (310)
T TIGR00746       181 NGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINY--GKPDEKALREVTVEELED  258 (310)
T ss_pred             CCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCC--CCCCCcCCcCcCHHHHHH
Confidence            7776666653  111 334433210 0246799999999999999999999999999974  347899999999999999


Q ss_pred             Hhh---cCCcccchh---hHHHHHhCCCCEEEEecc------CCCCCceEEe
Q 020431          176 MSY---FGANVLHPR---TIIPVMRYDIPIVIRNIF------NLSVPGIMIC  215 (326)
Q Consensus       176 l~~---~g~~v~~~~---a~~~a~~~~I~v~I~n~~------~~~~~GT~I~  215 (326)
                      +..   +++++|.|+   |++.+.+.+.+++|.+..      +.+ .||+|.
T Consensus       259 ~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~~~~i~~~l~G~-~GT~I~  309 (310)
T TIGR00746       259 YYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLENAVEALEGK-AGTRVT  309 (310)
T ss_pred             HHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEechHHHHHHHCCC-CCcEEe
Confidence            874   456888884   446666667889998743      233 688874

The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.

>PRK05279 N-acetylglutamate synthase; Validated

Probab=99.40  E-value=2.2e-12  Score=128.00  Aligned_cols=157  Identities=17%  Similarity=0.182  Sum_probs=117.9

Q ss_pred             cchHHHHHHHHHHHHHcCCceEEEcccceeeccCC-------------CCCC----CCCCchhhHHHHHHHhhcCCCcEE
Q 020431           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-------------SSNQ----VDPDFSESEKRLEKWFSQSPSNTI  104 (326)
Q Consensus        42 ~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~-------------~~g~----~~~~~~~~~~~i~~~l~~~~~~ip  104 (326)
                      .|+.  ...+.+.|+ .|++++++.+..+...+..             .+|.    ..++.    +.++.+++  .|.||
T Consensus       101 ~g~v--~~~l~~~l~-~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~----~~i~~ll~--~g~ip  171 (441)
T PRK05279        101 AGEL--RLDIEARLS-MGLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDA----EAIRRQLD--SGAIV  171 (441)
T ss_pred             HHHH--HHHHHHHHh-ccCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeH----HHHHHHHH--CCCeE
Confidence            3544  566677774 5999988776654433311             1121    12344    88999998  88999


Q ss_pred             EecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhh---cC-
Q 020431          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FG-  180 (326)
Q Consensus       105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~---~g-  180 (326)
                      |+++ ++.+.+|++.+++   +|.+|+.||..|+|++++|+|||||||+.      +++++++++.+|+.++..   .| 
T Consensus       172 V~~~-i~~~~~g~~~ni~---~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~  241 (441)
T PRK05279        172 LLSP-LGYSPTGESFNLT---MEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGD  241 (441)
T ss_pred             EECC-ceECCCCCEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCC
Confidence            9955 6888889988875   79999999999999999999999999953      478999999999988875   33 


Q ss_pred             -Ccccchh--hHHHHHhCCC-CEEEEeccCC----------CCCceEEeCC
Q 020431          181 -ANVLHPR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICRP  217 (326)
Q Consensus       181 -~~v~~~~--a~~~a~~~~I-~v~I~n~~~~----------~~~GT~I~~~  217 (326)
                       .++|.|+  ++..+.+.|+ +++|.++..|          +..||.|...
T Consensus       242 ~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~  292 (441)
T PRK05279        242 YNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME  292 (441)
T ss_pred             CCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence             4788886  5556667899 5999887543          2469999875

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=99.40  E-value=2.8e-12  Score=97.06  Aligned_cols=80  Identities=49%  Similarity=0.743  Sum_probs=76.7

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceEEEc
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSF  320 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~~~~  320 (326)
                      +++|+++|.++.+.+++.+++|+.|++++|+++|++|++++.++||+++.++..++++.||+.|+.++++.++.++.++.
T Consensus         1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~   80 (80)
T cd04921           1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADKALEALEEEFALEIKAGLIKPIEVEK   80 (80)
T ss_pred             CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHHhhhhhCcccceEeeC
Confidence            57999999999999999999999999999999999999899999999999999999999999999999999999998863

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=99.36  E-value=3e-12  Score=93.12  Aligned_cols=63  Identities=30%  Similarity=0.521  Sum_probs=59.9

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      +++|+++|.+|...||+++|+|++|+++||++.+++  +|+.+|||+|++++..++++.||++|+
T Consensus         1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~--~Se~~is~~v~~~~~~~av~~Lh~~f~   63 (64)
T cd04937           1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTA--DSHTTISCLVSEDDVKEAVNALHEAFE   63 (64)
T ss_pred             CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEE--cCccEEEEEEcHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999988  489999999999999999999999984

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>PRK12686 carbamate kinase; Reviewed

Probab=99.35  E-value=6.1e-12  Score=118.48  Aligned_cols=122  Identities=18%  Similarity=0.214  Sum_probs=91.1

Q ss_pred             HHHHHHhhcCCCcEEEecCccc---cCCCCCccccc-CCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEE
Q 020431           90 KRLEKWFSQSPSNTIIATGFIA---STPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi~---~~~~g~~~~lg-rggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i  165 (326)
                      +.|+.+++  .|.|||.+|.-|   .++++.+.... -+++|.+|+.||..++|++++|+|||||||+. |+ .|+++++
T Consensus       174 ~~I~~Ll~--~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~-~~-~p~ak~I  249 (312)
T PRK12686        174 DTIRTLVD--GGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN-FN-KPNQQKL  249 (312)
T ss_pred             HHHHHHHH--CCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC-CC-CCCCeEC
Confidence            77888998  899999987622   23445433321 34679999999999999999999999999994 65 3789999


Q ss_pred             eeecHHHHHHHhh---cCCcccchh--hHHHHHh--CCCCEEEEeccCC-----CCCceEEe
Q 020431          166 RTLSYQEAWEMSY---FGANVLHPR--TIIPVMR--YDIPIVIRNIFNL-----SVPGIMIC  215 (326)
Q Consensus       166 ~~ls~~e~~~l~~---~g~~v~~~~--a~~~a~~--~~I~v~I~n~~~~-----~~~GT~I~  215 (326)
                      ++++.+|+.++..   +++++|.||  ++..+.+  .|.+++|.+..+.     ...||.|.
T Consensus       250 ~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~~~~i~~aL~G~~GT~I~  311 (312)
T PRK12686        250 DDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITSLEQAKEALAGNAGTHIT  311 (312)
T ss_pred             CccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeCchHHHHHhCCCCCeEEe
Confidence            9999999999874   446889996  5555553  3578888875321     12688874

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=99.35  E-value=4.9e-12  Score=91.85  Aligned_cols=66  Identities=32%  Similarity=0.450  Sum_probs=63.1

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      +++|+++|.++...+++.+++|+.|+++||+++|++|+.++.+++|++++++..++++.||++|+.
T Consensus         1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~   66 (66)
T cd04916           1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN   66 (66)
T ss_pred             CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999999999988999999999999999999999999863

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=99.34  E-value=5e-12  Score=91.85  Aligned_cols=63  Identities=37%  Similarity=0.604  Sum_probs=60.2

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      +++|+++|.+|.+.+++.+++|++|++  +++.+++|++|+.+++|+|++++.+++++.||++|+
T Consensus         1 ~alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~~s~~~is~~V~~~~~~~a~~~Lh~~f~   63 (64)
T cd04917           1 LALVALIGNDISETAGVEKRIFDALED--INVRMICYGASNHNLCFLVKEEDKDEVVQRLHSRLF   63 (64)
T ss_pred             CeEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEecCccEEEEEEeHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999975  799999999999999999999999999999999987

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC)

Probab=99.34  E-value=3.9e-12  Score=92.36  Aligned_cols=63  Identities=21%  Similarity=0.318  Sum_probs=58.3

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      ++|+++|.+|...+|+.+++|++|++.  ++.+++|++|+.+|||+|+++|.+++++.||++||.
T Consensus         1 a~VsvVG~g~~~~~gv~~~~~~~L~~~--~i~~i~~~~s~~~is~vv~~~d~~~av~~LH~~f~~   63 (63)
T cd04920           1 AAVSLVGRGIRSLLHKLGPALEVFGKK--PVHLVSQAANDLNLTFVVDEDQADGLCARLHFQLIE   63 (63)
T ss_pred             CEEEEECCCcccCccHHHHHHHHHhcC--CceEEEEeCCCCeEEEEEeHHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999886  566788889999999999999999999999999973

This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase

Probab=99.33  E-value=1.4e-11  Score=121.94  Aligned_cols=157  Identities=13%  Similarity=0.096  Sum_probs=114.8

Q ss_pred             cchHHHHHHHHHHHHHcCCceEE-----Ecccceeecc-----------CCCCCC-CCCCchhhHHHHHHHhhcCCCcEE
Q 020431           42 HGELWSAQMLAAVVRKNGIDCKW-----MDTREVLIVN-----------PTSSNQ-VDPDFSESEKRLEKWFSQSPSNTI  104 (326)
Q Consensus        42 ~GE~~s~~~~~~~L~~~Gi~a~~-----l~~~~~~~~~-----------~~~~g~-~~~~~~~~~~~i~~~l~~~~~~ip  104 (326)
                      .|+.  .+.+++.|.+. +++..     +.+.+..++.           .+..|+ ..++.    +.++.+++  .|.||
T Consensus        93 ~g~v--n~~l~~~l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~----~~l~~ll~--~g~ip  163 (429)
T TIGR01890        93 AGTL--RLAIEARLSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDT----EGIRRQLD--AGSIV  163 (429)
T ss_pred             hChH--HHHHHHHHHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcH----HHHHHHHH--CCCeE
Confidence            5666  67778888777 54443     3333322221           011222 23555    88999998  88999


Q ss_pred             EecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcc-
Q 020431          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANV-  183 (326)
Q Consensus       105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v-  183 (326)
                      |++.. +.+.+|++.+++   +|..|+.||.+|+|++++|+|||+|||+.      +.+++++|+.+|+.++....... 
T Consensus       164 vi~pi-~~~~~g~~~nvn---aD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~  233 (429)
T TIGR01890       164 LLSPL-GHSPTGETFNLD---MEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSET  233 (429)
T ss_pred             EECCc-ccCCCCCEEEeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCC
Confidence            99885 888899999986   89999999999999999999999999963      36799999999998887533333 


Q ss_pred             cchh--hHHHHHhCCC-CEEEEeccCC----------CCCceEEeCC
Q 020431          184 LHPR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICRP  217 (326)
Q Consensus       184 ~~~~--a~~~a~~~~I-~v~I~n~~~~----------~~~GT~I~~~  217 (326)
                      |.|+  ++..|.+.|+ ++.|.++..+          +..||.|...
T Consensus       234 ~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d  280 (429)
T TIGR01890       234 TRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKE  280 (429)
T ss_pred             cHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEecc
Confidence            4675  6667778897 5899997533          3479999764

This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.

>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]

Probab=99.31  E-value=8.8e-12  Score=110.85  Aligned_cols=157  Identities=16%  Similarity=0.230  Sum_probs=109.7

Q ss_pred             hhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCc
Q 020431           39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIP  118 (326)
Q Consensus        39 i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~  118 (326)
                      ..+.|.-=...++-..|.++|+.+     .++.+++. .+-+ .-.+......|.++|.  -+.|||+      |+|..+
T Consensus        92 ~AAvGQ~~Lmalye~lF~Qy~~~i-----AQvLvT~~-Di~d-~~~r~Nl~~Ti~eLL~--m~viPIv------NeNDav  156 (285)
T KOG1154|consen   92 CAAVGQSGLMALYETLFTQYGITI-----AQVLVTRN-DILD-EQQRKNLQNTISELLS--MNVIPIV------NENDAV  156 (285)
T ss_pred             HHHhCcchHHHHHHHHHHHhccch-----heeeecCc-chhh-HHHHHHHHHHHHHHHh--CCceeee------cCCCcc
Confidence            445555444567788999999964     34444332 2211 0012233466778887  8999998      334333


Q ss_pred             cc--ccCCc---chHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHH-H-----HhhcCCcccchh
Q 020431          119 TT--LKRDG---SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW-E-----MSYFGANVLHPR  187 (326)
Q Consensus       119 ~~--lgrgg---sD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~-~-----l~~~g~~v~~~~  187 (326)
                      ..  +.+|+   +|..|+++|..++||.++++|||||+||..|... .+++++.++..+.. +     -+..|.++|..+
T Consensus       157 s~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~-~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tK  235 (285)
T KOG1154|consen  157 SPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDAD-PSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETK  235 (285)
T ss_pred             CCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCC-cceeeeeeccCCCCCccccCccCccCcCcchhh
Confidence            22  33455   7999999999999999999999999999766543 46888888765443 2     234678899885


Q ss_pred             --hHHHHHhCCCCEEEEeccCCCCCc
Q 020431          188 --TIIPVMRYDIPIVIRNIFNLSVPG  211 (326)
Q Consensus       188 --a~~~a~~~~I~v~I~n~~~~~~~G  211 (326)
                        |+..|...|+++.|.|+..|+..+
T Consensus       236 v~AA~~A~~~Gv~viI~~g~~p~~I~  261 (285)
T KOG1154|consen  236 VKAAVNALNAGVSVIITNGDAPENIT  261 (285)
T ss_pred             HHHHHHHhcCCceEEEeCCCChHHHH
Confidence              889999999999999998877443

>PLN02551 aspartokinase

Probab=99.31  E-value=1.6e-11  Score=123.71  Aligned_cols=123  Identities=16%  Similarity=0.185  Sum_probs=94.2

Q ss_pred             cccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCc------chh---hccCCeeeEEeecCeEEEEEecCCCC
Q 020431          182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENE------DEQ---IIDSPVKGFATIDNLALVNVEGTGMA  252 (326)
Q Consensus       182 ~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~------~~~---~~~~~v~~I~~~~~ia~IsivG~~~~  252 (326)
                      .++..+.+..+.++||++.+.++..   ....+.-+..+...      ..+   .+-..+..+.+.+++++|+++|. |.
T Consensus       380 ~g~~arvf~~l~~~~I~Vd~IssSe---~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~~V~v~~~vAiISvVG~-~~  455 (521)
T PLN02551        380 YGFLAKVFSTFEDLGISVDVVATSE---VSISLTLDPSKLWSRELIQQELDHLVEELEKIAVVNLLQGRSIISLIGN-VQ  455 (521)
T ss_pred             ccHHHHHHHHHHHcCCcEEEEeccC---CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCCeEEEeCCEEEEEEEcc-CC
Confidence            3455567888899999988886542   22222211111100      010   01123567889999999999998 78


Q ss_pred             CcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHh
Q 020431          253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (326)
Q Consensus       253 ~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~  308 (326)
                      ..+|+++++|++|+++||||.||+|++|+.+|||+|+++|.+++++.||++|+...
T Consensus       456 ~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~~Ff~~~  511 (521)
T PLN02551        456 RSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHSAFFEGD  511 (521)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHHHHhcCC
Confidence            89999999999999999999999999999999999999999999999999998643

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=99.31  E-value=1.2e-11  Score=89.61  Aligned_cols=64  Identities=47%  Similarity=0.734  Sum_probs=61.8

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF  304 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f  304 (326)
                      +++|+++|.++.+.+++.+++|+.|+++||+++|++|+.++.+++|++++++.+++.+.||++|
T Consensus         1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~Lh~~~   64 (66)
T cd04924           1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHDEF   64 (66)
T ss_pred             CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHh
Confidence            4799999999999999999999999999999999999889999999999999999999999987

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed

Probab=99.30  E-value=2e-11  Score=114.93  Aligned_cols=121  Identities=19%  Similarity=0.162  Sum_probs=90.9

Q ss_pred             HHHHHHhhcCCCcEEEecCcc---ccCCCCCccccc-CCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEE
Q 020431           90 KRLEKWFSQSPSNTIIATGFI---ASTPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi---~~~~~g~~~~lg-rggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i  165 (326)
                      +.|+.+++  .|.|||++|.-   ..+.+|.+.++. -.+.|.+|+.||..++|++++|+|||||||+. |+ .|+++++
T Consensus       176 ~aI~~LLe--~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i  251 (313)
T PRK12454        176 EVIKALVE--NGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPL  251 (313)
T ss_pred             HHHHHHHH--CCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEc
Confidence            67888888  89999999872   144556544322 13469999999999999999999999999986 43 4789999


Q ss_pred             eeecHHHHHHHhh---cCCcccchh--hH-HHHHhCCCCEEEEecc------CCCCCceEEe
Q 020431          166 RTLSYQEAWEMSY---FGANVLHPR--TI-IPVMRYDIPIVIRNIF------NLSVPGIMIC  215 (326)
Q Consensus       166 ~~ls~~e~~~l~~---~g~~v~~~~--a~-~~a~~~~I~v~I~n~~------~~~~~GT~I~  215 (326)
                      ++++++|+.++..   ++.+.|.||  ++ +.+.+.+.+++|.+..      +.+ .||.|.
T Consensus       252 ~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~~~~i~~aL~G~-~GT~I~  312 (313)
T PRK12454        252 DKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIASLEKAVEALEGK-TGTRII  312 (313)
T ss_pred             cccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECchHHHHHHHCCC-CCeEeC
Confidence            9999999988764   345779884  44 5555556778887643      222 689885

>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria

Probab=99.29  E-value=1.1e-11  Score=110.83  Aligned_cols=102  Identities=23%  Similarity=0.249  Sum_probs=81.0

Q ss_pred             HHHHHHHhhcCCCcEEEecCcccc----CCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeE
Q 020431           89 EKRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (326)
Q Consensus        89 ~~~i~~~l~~~~~~ipVv~Gfi~~----~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~  164 (326)
                      .+.+...+.  .+.+||+.++ +.    ++.++..++   .+|..|+.+|..++|++++++|||||||++|      +++
T Consensus        81 ~~~~~~~~~--~g~ipV~~P~-~~~~~~~~~~~~~~~---ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~  148 (203)
T cd04240          81 LAELTDVLE--RGKIAILLPY-RLLLDTDPLPHSWEV---TSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKL  148 (203)
T ss_pred             HHHHHHHHH--CCCcEEEeCc-hhhcccCCCCccccc---CHHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcC
Confidence            367777777  7899999776 22    223333333   2799999999999999999999999999864      899


Q ss_pred             EeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCC
Q 020431          165 LRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL  207 (326)
Q Consensus       165 i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~  207 (326)
                      ++++++.|+.     +..++++-+.+.+.++|++++|.|+..|
T Consensus       149 i~~i~~~e~~-----~~~~id~~~~~~~~~~gi~v~I~~g~~~  186 (203)
T cd04240         149 VNEIAAAELL-----GETSVDPAFPRLLTKYGIRCYVVNGDDP  186 (203)
T ss_pred             ccccCHHHhC-----CCCeehhhHHHHHHhCCCeEEEECCCCc
Confidence            9999988764     2567777677888999999999998755

Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.

>PRK06291 aspartate kinase; Provisional

Probab=99.25  E-value=1.8e-11  Score=122.19  Aligned_cols=123  Identities=25%  Similarity=0.359  Sum_probs=94.4

Q ss_pred             ccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchh-----hccCCeeeEEeecCeEEEEEecCCCCCcccH
Q 020431          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQ-----IIDSPVKGFATIDNLALVNVEGTGMAGVPGT  257 (326)
Q Consensus       183 v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~-----~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i  257 (326)
                      ++-.+.+..+.++||++...+....+ ..-.+.-...+.....+     .....++.+++.+++++|+++|.+|++.+|+
T Consensus       336 g~~arvf~~L~~~gI~V~mIsq~sse-~sIsf~V~~~d~~~av~~L~~~~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gv  414 (465)
T PRK06291        336 GTAARIFSALAEEGVNVIMISQGSSE-SNISLVVDEADLEKALKALRREFGEGLVRDVTFDKDVCVVAVVGAGMAGTPGV  414 (465)
T ss_pred             cHHHHHHHHHHHCCCcEEEEEecCCC-ceEEEEEeHHHHHHHHHHHHHHHHHhcCcceEEeCCEEEEEEEcCCccCCcCh
Confidence            44556788889999999888754322 21122211111000000     1112457799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          258 ANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       258 ~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      .+|+|++|++.||+|.||+|++|+.+|||+|++++.+++++.||++|+.
T Consensus       415 ~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~~f~~  463 (465)
T PRK06291        415 AGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHDEFIL  463 (465)
T ss_pred             HHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999853

>PRK12354 carbamate kinase; Reviewed

Probab=99.23  E-value=1.8e-10  Score=108.17  Aligned_cols=122  Identities=20%  Similarity=0.150  Sum_probs=88.3

Q ss_pred             HHHHHHhhcCCCcEEEecCcccc----CCCCCccccc-CCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeE
Q 020431           90 KRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi~~----~~~g~~~~lg-rggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~  164 (326)
                      +.|+.+++  .+.|||..|-=|.    +.++...... -.++|.+|+.||..++|+.++|+|||||||++++  .|++++
T Consensus       166 ~~I~~Ll~--~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~  241 (307)
T PRK12354        166 RPIRWLLE--KGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRA  241 (307)
T ss_pred             HHHHHHHH--CCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeE
Confidence            78899998  8887776542111    1123222211 2357999999999999999999999999999753  378999


Q ss_pred             EeeecHHHHHHHhhcCCcccchh---hHHHHHhCCCCEEEEecc------CCCCCceEEeCC
Q 020431          165 LRTLSYQEAWEMSYFGANVLHPR---TIIPVMRYDIPIVIRNIF------NLSVPGIMICRP  217 (326)
Q Consensus       165 i~~ls~~e~~~l~~~g~~v~~~~---a~~~a~~~~I~v~I~n~~------~~~~~GT~I~~~  217 (326)
                      +++++.+|+.++ .+.++.|.||   |++.+.+.+.+++|.+..      +. ..||.|.+.
T Consensus       242 i~~it~~e~~~~-~f~~GgM~pKV~AA~~~~~~gg~~viI~~~~~l~~al~G-~~GT~I~~~  301 (307)
T PRK12354        242 IAQATPDELREL-GFAAGSMGPKVEAACEFVRATGKIAGIGSLEDIQAILAG-EAGTRISPE  301 (307)
T ss_pred             CCCCCHHHHHhh-CCCcCChHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCC-CCceEEecC
Confidence            999999999888 6678899996   445555556678776532      12 269999763

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=99.22  E-value=6e-11  Score=117.31  Aligned_cols=120  Identities=27%  Similarity=0.267  Sum_probs=90.4

Q ss_pred             ccchhhHHHHHhCCCCEEEEeccCCCCCceEEe-CCCCCCCcc---hhhc-cCCeeeEEeecCeEEEEEecCCCCCcccH
Q 020431          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC-RPPVDENED---EQII-DSPVKGFATIDNLALVNVEGTGMAGVPGT  257 (326)
Q Consensus       183 v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~-~~~~~~~~~---~~~~-~~~v~~I~~~~~ia~IsivG~~~~~~~~i  257 (326)
                      ++..+-+..+.++|+++..+.+...+ .+-.+. +..+ .+..   ++.. ......+...+++++|+++|.+|.++||+
T Consensus       322 g~~a~vf~~l~~~~i~v~~I~q~~~~-~~i~~~v~~~~-~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~gm~~~~gv  399 (447)
T COG0527         322 GFAARVFGILAEAGINVDLITQSISE-VSISFTVPESD-APRALRALLEEKLELLAEVEVEEGLALVSIVGAGMRSNPGV  399 (447)
T ss_pred             cHHHHHHHHHHHcCCcEEEEEeccCC-CeEEEEEchhh-HHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccccccCcCH
Confidence            44556788888999998666544322 232222 2211 1100   1111 11122688899999999999999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          258 ANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       258 ~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      ++++|++|++++||+.||+  +|+.+|||+|++++.+++++.||+.|+.
T Consensus       400 aa~~f~aL~~~~ini~~is--sSe~~Is~vV~~~~~~~av~~LH~~~~~  446 (447)
T COG0527         400 AARIFQALAEENINIIMIS--SSEISISFVVDEKDAEKAVRALHEAFFL  446 (447)
T ss_pred             HHHHHHHHHhCCCcEEEEE--cCCceEEEEEccHHHHHHHHHHHHHHhc
Confidence            9999999999999999999  8999999999999999999999999874

>PRK09181 aspartate kinase; Validated

Probab=99.22  E-value=4.3e-11  Score=119.37  Aligned_cols=125  Identities=18%  Similarity=0.256  Sum_probs=91.7

Q ss_pred             cccchhhHHHHHhCCCCEEEEeccCCCCCceEEe-CCCCCC-CcchhhccC--CeeeEEeecCeEEEEEecCCCCCcccH
Q 020431          182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC-RPPVDE-NEDEQIIDS--PVKGFATIDNLALVNVEGTGMAGVPGT  257 (326)
Q Consensus       182 ~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~-~~~~~~-~~~~~~~~~--~v~~I~~~~~ia~IsivG~~~~~~~~i  257 (326)
                      .++..+.+..+.+++|++.......   ....+. ....+. ....+....  ....+.. +++++|++||.+|. .||+
T Consensus       343 ~g~~~~if~~l~~~~i~v~~i~ss~---~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~~-~~~a~VsvVG~gm~-~~gv  417 (475)
T PRK09181        343 DGYDLEILEILTRHKVSYISKATNA---NTITHYLWGSLKTLKRVIAELEKRYPNAEVTV-RKVAIVSAIGSNIA-VPGV  417 (475)
T ss_pred             chHHHHHHHHHHHcCCeEEEEEecC---cEEEEEEcCChHHHHHHHHHHHHhcCCceEEE-CCceEEEEeCCCCC-cccH
Confidence            3444567888899999988765442   222222 211010 000111111  1235664 89999999999995 8999


Q ss_pred             HHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcCC
Q 020431          258 ANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAG  311 (326)
Q Consensus       258 ~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~  311 (326)
                      .+++|++|++.|||+.||+|++|+.+|||+|+++|.+++++.||++|+....++
T Consensus       418 ~ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~lH~~f~~~~~~~  471 (475)
T PRK09181        418 LAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICALHEALVENHNHG  471 (475)
T ss_pred             HHHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999999999999999999999999999999999998655443

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=99.21  E-value=7.5e-11  Score=124.95  Aligned_cols=125  Identities=23%  Similarity=0.361  Sum_probs=96.8

Q ss_pred             ccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcc---------hhhccCCeeeEEeecCeEEEEEecCCCCC
Q 020431          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENED---------EQIIDSPVKGFATIDNLALVNVEGTGMAG  253 (326)
Q Consensus       183 v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~---------~~~~~~~v~~I~~~~~ia~IsivG~~~~~  253 (326)
                      ++-.+.+..+.++||++...+....+ ..-.+.-+..+....         .+.....++.|++.+++++|+++|.+|..
T Consensus       330 G~~arIf~~La~~gI~V~mIsqssSe-~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~~~~valIsvvG~gm~~  408 (819)
T PRK09436        330 GMASRVFAALSRAGISVVLITQSSSE-YSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENLAIISVVGDGMRT  408 (819)
T ss_pred             CHHHHHHHHHHHCCCcEEEEEcCCCC-ceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCEEEEEEEccCccc
Confidence            34456788889999999888754322 221222111110000         01112357789999999999999999999


Q ss_pred             cccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHh
Q 020431          254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (326)
Q Consensus       254 ~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~  308 (326)
                      .+|+.+|+|++|++.||||.||+|++|+.+|||+|++++.+++++.||++|+.+.
T Consensus       409 ~~gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~~f~~~~  463 (819)
T PRK09436        409 HPGIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQSFFLSD  463 (819)
T ss_pred             CcCHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999999997653

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=99.18  E-value=8.5e-11  Score=85.91  Aligned_cols=63  Identities=38%  Similarity=0.588  Sum_probs=58.6

Q ss_pred             eecCeEEEEEecCCCCC-cccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHH
Q 020431          237 TIDNLALVNVEGTGMAG-VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       237 ~~~~ia~IsivG~~~~~-~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      ..++++.|+++|.+|.. .||+++++|++|+++||++.+++   |+.+++++|+++++++|++.||+
T Consensus         2 ~~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is---S~~~~~ilV~~~~~~~A~~~L~~   65 (65)
T PF13840_consen    2 IEEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS---SEISISILVKEEDLEKAVEALHE   65 (65)
T ss_dssp             EESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE---ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred             ccCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE---EeeeEEEEEeHHHHHHHHHHhcC
Confidence            46789999999999976 99999999999999999999998   79999999999999999999985

>PRK09034 aspartate kinase; Reviewed

Probab=99.15  E-value=1.3e-10  Score=115.74  Aligned_cols=121  Identities=21%  Similarity=0.192  Sum_probs=92.6

Q ss_pred             cchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCc-----chh-hc-cCCeeeEEeecCeEEEEEecCCCCCccc
Q 020431          184 LHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENE-----DEQ-II-DSPVKGFATIDNLALVNVEGTGMAGVPG  256 (326)
Q Consensus       184 ~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~-----~~~-~~-~~~v~~I~~~~~ia~IsivG~~~~~~~~  256 (326)
                      +-.+.+..+.++|+++.+.+...   ..-.+.-+..+...     ... .. .-...++++.+|+++|+++|.+|.+.++
T Consensus       324 ~~a~if~~la~~~I~Vd~i~ss~---~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~g~~~~~g  400 (454)
T PRK09034        324 FGRKVLQILEDHGISYEHMPSGI---DDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVG  400 (454)
T ss_pred             HHHHHHHHHHHcCCeEEEEcCCC---cEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECCCCCCCcc
Confidence            33467788889999988874221   22222211111100     000 01 1235789999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHH
Q 020431          257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (326)
Q Consensus       257 i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (326)
                      +.+++|++|+++||||+||+|++|+.+|||+|++++..++++.||++|+.+
T Consensus       401 v~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH~~f~~~  451 (454)
T PRK09034        401 VAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYNAFFKE  451 (454)
T ss_pred             HHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999754

>PRK07431 aspartate kinase; Provisional

Probab=99.15  E-value=1.6e-10  Score=118.74  Aligned_cols=132  Identities=17%  Similarity=0.219  Sum_probs=100.2

Q ss_pred             ccchhhHHHHHhCCCCEEEEeccCCCC--CceEEeCCCCCCCcch---hhccCCe--eeEEeecCeEEEEEecCCCCCcc
Q 020431          183 VLHPRTIIPVMRYDIPIVIRNIFNLSV--PGIMICRPPVDENEDE---QIIDSPV--KGFATIDNLALVNVEGTGMAGVP  255 (326)
Q Consensus       183 v~~~~a~~~a~~~~I~v~I~n~~~~~~--~GT~I~~~~~~~~~~~---~~~~~~v--~~I~~~~~ia~IsivG~~~~~~~  255 (326)
                      ++-.+-+..+.++|+++...++.-++.  ..-.+.-...+.....   ......+  ..+++.+++++|+++|.+|++.+
T Consensus       283 g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~~~~~l~~l~~~~~~~~i~~~~~~a~IsvvG~gm~~~~  362 (587)
T PRK07431        283 GIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENELKKAEAVAEAIAPALGGAEVLVETNVAKLSISGAGMMGRP  362 (587)
T ss_pred             cHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHHHHHHHHHHHHHHHcCCCcEEEeCCeEEEEEECCCcccCc
Confidence            444567888899999988886543221  1222222111100000   0011111  46889999999999999999999


Q ss_pred             cHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcce
Q 020431          256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQV  316 (326)
Q Consensus       256 ~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v  316 (326)
                      |+.+++|++|++++|+|.||+  +|+.+|||+|++++.+++++.||++|+.+..+.++.++
T Consensus       363 gi~~ki~~aL~~~~I~i~~i~--sSe~~Is~vv~~~d~~~av~~Lh~~f~~~~~~~~~~~~  421 (587)
T PRK07431        363 GIAAKMFDTLAEAGINIRMIS--TSEVKVSCVIDAEDGDKALRAVCEAFELEDSQIEINPT  421 (587)
T ss_pred             cHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEcHHHHHHHHHHHHHHhccCCcccccCcc
Confidence            999999999999999999999  89999999999999999999999999988888888877

>PRK09411 carbamate kinase; Reviewed

Probab=99.14  E-value=7.6e-10  Score=103.28  Aligned_cols=118  Identities=18%  Similarity=0.248  Sum_probs=87.6

Q ss_pred             HHHHHHhhcCCCcEEEecCc--cc--cCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEE
Q 020431           90 KRLEKWFSQSPSNTIIATGF--IA--STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gf--i~--~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i  165 (326)
                      +.|+.+++  .|.|||.+|-  ++  .+.+|...++   +.|.+|+.||..|+|++++|+|||||||..++  .|+++++
T Consensus       167 ~~I~~Ll~--~G~IVI~~gGGGIPV~~~~~G~e~vI---DkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I  239 (297)
T PRK09411        167 EAIELLLK--EGHVVICSGGGGVPVTEDGAGSEAVI---DKDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAI  239 (297)
T ss_pred             HHHHHHHH--CCCEEEecCCCCCCeEEcCCCeEEec---CHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCC
Confidence            78999998  8888887643  11  2223444433   47999999999999999999999999998643  4788999


Q ss_pred             eeecHHHHHHHhhcCCcccchh---hHHHHHhCCCCEEEEeccCC-----CCCceEEe
Q 020431          166 RTLSYQEAWEMSYFGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMIC  215 (326)
Q Consensus       166 ~~ls~~e~~~l~~~g~~v~~~~---a~~~a~~~~I~v~I~n~~~~-----~~~GT~I~  215 (326)
                      ++++.+|+.++.. ..+.|.||   |++.+...+.+++|.+..+.     ...||.|.
T Consensus       240 ~~it~~e~~~~~~-~~GgM~pKVeAA~~~v~~~g~~a~I~~l~~~~~~l~G~~GT~I~  296 (297)
T PRK09411        240 RHATPDELAPFAK-ADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCIS  296 (297)
T ss_pred             CCcCHHHHHHhcc-CCCCcHHHHHHHHHHHHhCCCeEEECChhHHHHHHCCCCCeEEe
Confidence            9999999977764 45678886   45666667788888764320     12688874

>PRK09084 aspartate kinase III; Validated

Probab=99.10  E-value=7e-10  Score=110.31  Aligned_cols=119  Identities=22%  Similarity=0.298  Sum_probs=90.4

Q ss_pred             ccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCC------c--chhhccCCeeeEEeecCeEEEEEecCCCCCc
Q 020431          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN------E--DEQIIDSPVKGFATIDNLALVNVEGTGMAGV  254 (326)
Q Consensus       183 v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~------~--~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~  254 (326)
                      ++-.+.+..+.++||++.+.++..   ..-.+.-+..+..      .  ....+-..+..+.+.+|+++|+++|.+|.+.
T Consensus       321 g~~a~if~~l~~~~I~Vd~I~sse---~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~i~~~~~va~IsvvG~gm~~~  397 (448)
T PRK09084        321 GFLAEVFGILARHKISVDLITTSE---VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCRVEVEEGLALVALIGNNLSKA  397 (448)
T ss_pred             cHHHHHHHHHHHcCCeEEEEeccC---cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCeEEEECCeEEEEEECCCcccC
Confidence            444567888999999988887542   2212221111100      0  0000112356788999999999999999999


Q ss_pred             ccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          255 PGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       255 ~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      ||+++|+|++|++  +||.||+|++|+.+|||+|++++..++++.||++|+.
T Consensus       398 ~gv~arif~aL~~--~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH~~f~~  447 (448)
T PRK09084        398 CGVAKRVFGVLEP--FNIRMICYGASSHNLCFLVPESDAEQVVQALHQNLFE  447 (448)
T ss_pred             cChHHHHHHHHHh--CCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHHHHHhc
Confidence            9999999999986  6899999999999999999999999999999999974

>PRK12352 putative carbamate kinase; Reviewed

Probab=99.10  E-value=5.1e-10  Score=106.01  Aligned_cols=120  Identities=13%  Similarity=0.124  Sum_probs=85.8

Q ss_pred             HHHHHHhhcCCCcEEEec-----CccccCCCCCcccccC-CcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCe
Q 020431           90 KRLEKWFSQSPSNTIIAT-----GFIASTPDNIPTTLKR-DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV  163 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~-----Gfi~~~~~g~~~~lgr-ggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~  163 (326)
                      +.|+.+++  .+.|+|.+     .. +.+..|+..++.- =+.|..|+.+|.+|+|++++|+|||+|||.++|+  ++++
T Consensus       177 ~~I~~ll~--~g~iVi~~ggggiPv-~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~--~~~~  251 (316)
T PRK12352        177 PAIKALIQ--QGFVVIGAGGGGIPV-VRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGK--PQQQ  251 (316)
T ss_pred             HHHHHHHH--CCCEEEecCCCCCCE-EeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCCCC--CCcc
Confidence            78888998  88885543     21 2233333322110 0279999999999999999999999999988654  6788


Q ss_pred             EEeeecHHHHHHHhhcC---Ccccchh--hHHHHHhCCC-CEEEEecc------CCCCCceEEe
Q 020431          164 ILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI-PIVIRNIF------NLSVPGIMIC  215 (326)
Q Consensus       164 ~i~~ls~~e~~~l~~~g---~~v~~~~--a~~~a~~~~I-~v~I~n~~------~~~~~GT~I~  215 (326)
                      ++++++.+|+.++...|   .+.|.|+  ++..+.+.|+ +++|.+..      +.+ .||+|.
T Consensus       252 li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~~~~i~~al~g~-~GT~I~  314 (316)
T PRK12352        252 ALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPECLPAALRGE-TGTHII  314 (316)
T ss_pred             cccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcchHHHHHHHcCC-CCeEEE
Confidence            99999999999998644   4688885  4544455555 68888743      222 688885

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=99.05  E-value=9.9e-10  Score=78.37  Aligned_cols=64  Identities=47%  Similarity=0.733  Sum_probs=60.5

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      ++|+++|.++...+++.+++|+.|++++|++.+++|+.++.+++|++++++..++++.||++|+
T Consensus         1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~~~~~~~~l~~~~~   64 (65)
T cd04892           1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALHEEFF   64 (65)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999999999999997778999999999999999999999875

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=99.04  E-value=1e-09  Score=78.47  Aligned_cols=62  Identities=34%  Similarity=0.554  Sum_probs=58.1

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      ++|+++|.++.+.+++.+++|+.|+++||+++|+++  ++.+++|+|++++.+++++.||++|+
T Consensus         1 ~~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~--s~~~is~~v~~~d~~~~~~~l~~~~~   62 (63)
T cd04936           1 AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST--SEIKISCLIDEDDAEKAVRALHEAFE   62 (63)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc--cCceEEEEEeHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999994  58999999999999999999999884

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=99.02  E-value=1.4e-09  Score=77.81  Aligned_cols=62  Identities=35%  Similarity=0.562  Sum_probs=58.2

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      ++|+++|.++...+++.+++|+.|++++|++++++  +++.+++|++++++..++++.||++|+
T Consensus         1 ~~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~--~s~~~is~~v~~~~~~~~~~~l~~~l~   62 (63)
T cd04923           1 AKVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS--TSEIKISCLVDEDDAEKAVRALHEAFE   62 (63)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE--ccCCeEEEEEeHHHHHHHHHHHHHHhc
Confidence            47899999999999999999999999999999999  468999999999999999999999884

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=99.01  E-value=1.4e-09  Score=106.78  Aligned_cols=121  Identities=26%  Similarity=0.402  Sum_probs=91.2

Q ss_pred             ccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhc-----cCCeeeEEeecCeEEEEEecCCCCCcccH
Q 020431          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQII-----DSPVKGFATIDNLALVNVEGTGMAGVPGT  257 (326)
Q Consensus       183 v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~-----~~~v~~I~~~~~ia~IsivG~~~~~~~~i  257 (326)
                      ++-.+.+..+.+++|++...+....+ ..-.+.-...+.....+..     ...+..+...+|+++|+++|.+|++.||+
T Consensus       275 g~~~~if~~L~~~~I~i~~i~~~~s~-~~Is~~V~~~d~~~a~~~L~~~~~~~~~~~i~~~~~~a~IsvVG~~~~~~~g~  353 (401)
T TIGR00656       275 GFLARIFGALAERNINVDLISQTPSE-TSISLTVDETDADEAVRALKDQSGAAGLDRVEVEEGLAKVSIVGAGMVGAPGV  353 (401)
T ss_pred             cHHHHHHHHHHHcCCcEEEEEcCCCC-ceEEEEEeHHHHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCcccCccH
Confidence            34446778888999999888765322 2222221111111011100     11246788999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          258 ANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       258 ~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      ++++|+.|+++|||+.+++  +|+.+++|+|+++|.+++++.||++|+.
T Consensus       354 ~a~i~~~L~~~gIni~~i~--~s~~~is~vv~~~d~~~av~~Lh~~f~~  400 (401)
T TIGR00656       354 ASEIFSALEEKNINILMIG--SSETNISFLVDEKDAEKAVRKLHEVFEE  400 (401)
T ss_pred             HHHHHHHHHHCCCcEEEEE--cCCCEEEEEEeHHHHHHHHHHHHHHHcc
Confidence            9999999999999999987  8999999999999999999999999864

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK04531 acetylglutamate kinase; Provisional

Probab=99.00  E-value=5.7e-09  Score=102.02  Aligned_cols=113  Identities=12%  Similarity=0.151  Sum_probs=82.4

Q ss_pred             HHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecH-
Q 020431           92 LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-  170 (326)
Q Consensus        92 i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~-  170 (326)
                      ++.+++  .|.|||++++ |.+..|++.+++   +|..|+.||.+|+|++++|+|||+|||+.      +.+++++++. 
T Consensus       122 I~~~L~--~g~IPVlspl-g~~~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~------~g~~i~~i~~~  189 (398)
T PRK04531        122 VESSLR--AGSIPVIASL-GETPSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDA------DGKLISSINLS  189 (398)
T ss_pred             HHHHHH--CCCEEEEeCc-EECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCC------CCCCcccCCHH
Confidence            666776  8999999986 777889988875   79999999999999999999999999974      3678999986 


Q ss_pred             HHHHHHhhcC--Ccccchh--hHHHHHhCCCCEEEEecc----------CCCCCceEEeC
Q 020431          171 QEAWEMSYFG--ANVLHPR--TIIPVMRYDIPIVIRNIF----------NLSVPGIMICR  216 (326)
Q Consensus       171 ~e~~~l~~~g--~~v~~~~--a~~~a~~~~I~v~I~n~~----------~~~~~GT~I~~  216 (326)
                      +|...+...+  .++|.|+  ++..|.+..-.+.++...          ..++.||.|..
T Consensus       190 ~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~  249 (398)
T PRK04531        190 TEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKGSGTLVRR  249 (398)
T ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCCCCeEEec
Confidence            5777775433  4678775  444444331123333322          22347999975

>TIGR00657 asp_kinases aspartate kinase

Probab=98.95  E-value=3.8e-09  Score=104.96  Aligned_cols=120  Identities=25%  Similarity=0.317  Sum_probs=91.2

Q ss_pred             ccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchh-----hccCCeeeEEeecCeEEEEEecCCCCCcccH
Q 020431          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQ-----IIDSPVKGFATIDNLALVNVEGTGMAGVPGT  257 (326)
Q Consensus       183 v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~-----~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i  257 (326)
                      ++-.+.+..+.++||++...++...+ ..-.+.-+..+......     .....++.|++.+|+++|+++|.+|.+.||+
T Consensus       316 g~la~if~~L~~~~I~I~~i~q~~se-~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~  394 (441)
T TIGR00657       316 GFLARVFGALAEAGINVDLITQSSSE-TSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGV  394 (441)
T ss_pred             cHHHHHHHHHHHcCCeEEEEEecCCC-ceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCch
Confidence            33446778889999998877643322 22222211111000100     1134678899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHH
Q 020431          258 ANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       258 ~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      .+++|+.|+++||||.||+  +|+.+|+|+|+++|.+++++.||++|+
T Consensus       395 ~a~if~~La~~~Inv~~i~--~se~~Is~vV~~~d~~~a~~~Lh~~f~  440 (441)
T TIGR00657       395 ASKIFEALAQNGINIEMIS--SSEINISFVVDEKDAEKAVRLLHNALF  440 (441)
T ss_pred             HHHHHHHHHHCCCCEEEEE--ecCCcEEEEEeHHHHHHHHHHHHHHhh
Confidence            9999999999999999999  578999999999999999999999986

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=98.93  E-value=9.3e-09  Score=77.13  Aligned_cols=71  Identities=24%  Similarity=0.386  Sum_probs=60.4

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccH---HHHHHHHHHHHHHHhcCCCCcceE
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV---KAVAEALESKFREALNAGRLSQVC  317 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~---~~av~~Lh~~f~~~~~~~~~~~v~  317 (326)
                      +++|+++|.++.+.+|+.+++|++|+++||++++++  +|+.++||++++++.   ...++.|-+++..      +.+++
T Consensus         1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~~~is~~v~~~~~~~~~~~~~~~~~~l~~------~~~~~   72 (75)
T cd04912           1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSEVSVSLTLDPTKNLSDQLLLDALVKDLSQ------IGDVE   72 (75)
T ss_pred             CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCCcEEEEEEEchhhccchHHHHHHHHHHHh------CCEEE
Confidence            478999999999999999999999999999999998  578999999999886   5567677676644      66666


Q ss_pred             EE
Q 020431          318 LS  319 (326)
Q Consensus       318 ~~  319 (326)
                      ++
T Consensus        73 ~~   74 (75)
T cd04912          73 VE   74 (75)
T ss_pred             Ee
Confidence            54

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>PLN02825 amino-acid N-acetyltransferase

Probab=98.91  E-value=6.2e-09  Score=104.53  Aligned_cols=109  Identities=9%  Similarity=0.107  Sum_probs=85.0

Q ss_pred             HHHHHcCCce----EEEcccceeeccCC--------CCC---C-CCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCC
Q 020431           53 AVVRKNGIDC----KWMDTREVLIVNPT--------SSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN  116 (326)
Q Consensus        53 ~~L~~~Gi~a----~~l~~~~~~~~~~~--------~~g---~-~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g  116 (326)
                      ..|+++|+++    ..+++.+...++..        .+|   + .++|.    +.|+.+++  .|.|||++.. |.+.+|
T Consensus       111 ~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~----~~i~~~L~--~g~Ipvispl-g~s~~G  183 (515)
T PLN02825        111 PNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDV----SRIKERLD--SNCIVLLSNL-GYSSSG  183 (515)
T ss_pred             hHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcH----HHHHHHHh--CCCeEEECCc-eECCCC
Confidence            3469999998    66665553222211        222   2 24566    88999998  8999999995 999999


Q ss_pred             CcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhh
Q 020431          117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY  178 (326)
Q Consensus       117 ~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~  178 (326)
                      ++.|++   +|..|+.+|.+|+|++++|+||++ +++.      +.+++++++.+|+.++..
T Consensus       184 e~~Nin---aD~vA~avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~  235 (515)
T PLN02825        184 EVLNCN---TYEVATACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIR  235 (515)
T ss_pred             CEEeeC---HHHHHHHHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHH
Confidence            999985   899999999999999999999977 5542      357999999999998864

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=98.91  E-value=3.9e-09  Score=112.82  Aligned_cols=121  Identities=15%  Similarity=0.179  Sum_probs=91.5

Q ss_pred             cccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCC---Ccchh---hccCCeeeEEeecCeEEEEEecCCCCCcc
Q 020431          182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE---NEDEQ---IIDSPVKGFATIDNLALVNVEGTGMAGVP  255 (326)
Q Consensus       182 ~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~---~~~~~---~~~~~v~~I~~~~~ia~IsivG~~~~~~~  255 (326)
                      .++..+.+..+.+++|++.+++...   ..-.+.-...+.   +...+   ..-..+..+.+.+++++|++||.+|.+.+
T Consensus       336 ~g~~a~if~~la~~~I~Vd~I~sse---~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~~~~~va~ISvVG~gm~~~~  412 (861)
T PRK08961        336 VGFLADVFTLFKKHGLSVDLISSSE---TNVTVSLDPSENLVNTDVLAALSADLSQICRVKIIVPCAAVSLVGRGMRSLL  412 (861)
T ss_pred             ccHHHHHHHHHHHcCCeEEEEEcCC---CEEEEEEccccccchHHHHHHHHHHHhhcCcEEEeCCeEEEEEeCCCcccCc
Confidence            3555677888999999988886442   222222111111   01111   11123456888899999999999999999


Q ss_pred             cHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHH
Q 020431          256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (326)
Q Consensus       256 ~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (326)
                      |+++++|++|++.  +|.|++|++|+.+|||+|+++|.+++++.||++|+..
T Consensus       413 gv~arif~aL~~~--~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~~f~~~  462 (861)
T PRK08961        413 HKLGPAWATFGAE--RVHLISQASNDLNLTFVIDESDADGLLPRLHAELIES  462 (861)
T ss_pred             ChHHHHHHHHhhc--CeEEEECCCccccEEEEEeHHHHHHHHHHHHHHHhcC
Confidence            9999999999986  5788999999999999999999999999999999765

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=98.89  E-value=1.5e-08  Score=76.10  Aligned_cols=71  Identities=21%  Similarity=0.316  Sum_probs=56.2

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHH--HHHH-HHHHHHHHHhcCCCCcceE
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK--AVAE-ALESKFREALNAGRLSQVC  317 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~--~av~-~Lh~~f~~~~~~~~~~~v~  317 (326)
                      +++|++.|.++.+.+|+.+++|+.|+++||+|+||+|  |+.++||+++.++..  ++++ .|-++|..      ++.|+
T Consensus         1 ~~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~--s~~~iSftv~~~d~~~~~~~~~~l~~~l~~------~~~v~   72 (75)
T cd04932           1 QTLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT--SEISVALTLDNTGSTSDQLLTQALLKELSQ------ICDVK   72 (75)
T ss_pred             CEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee--cCCEEEEEEeccccchhHHHHHHHHHHHHh------ccEEE
Confidence            4789998889999999999999999999999999996  579999999998743  2443 44444422      56666


Q ss_pred             EE
Q 020431          318 LS  319 (326)
Q Consensus       318 ~~  319 (326)
                      ++
T Consensus        73 ~~   74 (75)
T cd04932          73 VE   74 (75)
T ss_pred             ee
Confidence            54

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05925 aspartate kinase; Provisional

Probab=98.88  E-value=7.2e-09  Score=102.67  Aligned_cols=117  Identities=17%  Similarity=0.098  Sum_probs=87.4

Q ss_pred             hhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCC-Ccch---hhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHH
Q 020431          186 PRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE-NEDE---QIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAI  261 (326)
Q Consensus       186 ~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~-~~~~---~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~i  261 (326)
                      .+.+..+.++||++.+.+...   .+-.+.-...+. ....   ....+.+..+.+.+++++|+++|.+|++ +++.+++
T Consensus       316 ~~if~~l~~~~I~vd~i~s~~---~sis~~i~~~~~~~~~~~~l~~~l~~~~~i~~~~~~a~VsvVG~gm~~-~~v~~~~  391 (440)
T PRK05925        316 EDVLGILRSLGIVPGLVMAQN---LGVYFTIDDDDISEEYPQHLTDALSAFGTVSCEGPLALITMIGAKLAS-WKVVRTF  391 (440)
T ss_pred             HHHHHHHHHcCCcEEEEeccC---CEEEEEEechhccHHHHHHHHHHhcCCceEEEECCEEEEEEeCCCccc-ccHHHHH
Confidence            367788899999986654331   222222111111 1011   1112345678999999999999999998 7899999


Q ss_pred             HHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHh
Q 020431          262 FGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (326)
Q Consensus       262 f~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~  308 (326)
                      |++|++.|||+.+++|  |+.+|||+|+++|..++++.||++|+...
T Consensus       392 ~~aL~~~~Ini~~i~~--s~~~is~vV~~~d~~~av~~LH~~f~~~~  436 (440)
T PRK05925        392 TEKLRGYQTPVFCWCQ--SDMALNLVVNEELAVAVTELLHNDYVKQK  436 (440)
T ss_pred             HHHHhhCCCCEEEEEC--CCceEEEEEehHHHHHHHHHHHHHHhccc
Confidence            9999999999999986  57799999999999999999999998654

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=98.88  E-value=8.7e-09  Score=108.92  Aligned_cols=123  Identities=12%  Similarity=0.128  Sum_probs=89.7

Q ss_pred             ccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhc--cCCeeeEEeecCeEEEEEecCCCCCcccHHHH
Q 020431          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQII--DSPVKGFATIDNLALVNVEGTGMAGVPGTANA  260 (326)
Q Consensus       183 v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~--~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~  260 (326)
                      .+..+.+..+.+++|++.+.++...+ ....+.-...+........  ......+.+.+++++|++||.+|++.+|+.++
T Consensus       332 g~~~~if~~l~~~~I~v~~i~~~~s~-~sis~~i~~~~~~~~~~~l~~~~~~~~i~v~~~~a~VsvVG~gm~~~~gv~~~  410 (810)
T PRK09466        332 LAQKELDQLLKRAQLRPLAVGVHPDR-QLLQLAYTSEVADSALKLLDDAALPGELKLREGLALVALVGAGVTRNPLHCHR  410 (810)
T ss_pred             hHHHHHHHHHHHCCCeEEEEEecCCC-cEEEEEEeHHHHHHHHHHHHhhcCCCcEEEeCCeEEEEEeCCCcccCccHHHH
Confidence            33456788889999998888654322 2223322111111100000  01236788899999999999999999999999


Q ss_pred             HHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHh
Q 020431          261 IFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (326)
Q Consensus       261 if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~  308 (326)
                      +|++|++.+|++  ++|++|+.+|||+|+++|.+++++.||++|+...
T Consensus       411 ~f~aL~~~~I~i--i~~~~s~~sis~vV~~~d~~~av~~LH~~f~~~~  456 (810)
T PRK09466        411 FYQQLKDQPVEF--IWQSEDGLSLVAVLRQGPTESLIQGLHQSLFRAE  456 (810)
T ss_pred             HHHHHHhCCCcE--EEEeCCCcEEEEEEehHHHHHHHHHHHHHHhCcC
Confidence            999999997765  5556889999999999999999999999997643

>PRK06635 aspartate kinase; Reviewed

Probab=98.87  E-value=1e-08  Score=100.77  Aligned_cols=121  Identities=23%  Similarity=0.266  Sum_probs=91.2

Q ss_pred             ccchhhHHHHHhCCCCEEEEeccCCCC--CceEEeCCCCCCCcchh---h--ccCCeeeEEeecCeEEEEEecCCCCCcc
Q 020431          183 VLHPRTIIPVMRYDIPIVIRNIFNLSV--PGIMICRPPVDENEDEQ---I--IDSPVKGFATIDNLALVNVEGTGMAGVP  255 (326)
Q Consensus       183 v~~~~a~~~a~~~~I~v~I~n~~~~~~--~GT~I~~~~~~~~~~~~---~--~~~~v~~I~~~~~ia~IsivG~~~~~~~  255 (326)
                      +.-.+.+..+.++||++...++...+.  ..-.+.-...+.....+   .  ..-.++.+++.+|+++|+++|.+|.+.|
T Consensus       275 g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~~~~~~~~~i~~~~~ia~isvvG~~~~~~~  354 (404)
T PRK06635        275 GIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHP  354 (404)
T ss_pred             cHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHHHHHcCcceEEEcCCeEEEEEECCCCCCCc
Confidence            333467888899999998887764331  12222211111111111   0  0113677999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHH
Q 020431          256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       256 ~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      |+++++|++|+++||||.+++  +|+.+++|+++++|.+++++.||++|.
T Consensus       355 g~~a~i~~~La~~~Ini~~i~--ss~~~is~vv~~~d~~~a~~~Lh~~f~  402 (404)
T PRK06635        355 GVAAKMFEALAEEGINIQMIS--TSEIKISVLIDEKYLELAVRALHEAFG  402 (404)
T ss_pred             hHHHHHHHHHHHCCCCEEEEE--ecCCeEEEEEcHHHHHHHHHHHHHHHC
Confidence            999999999999999999998  579999999999999999999999984

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=98.86  E-value=9.2e-09  Score=71.85  Aligned_cols=60  Identities=43%  Similarity=0.680  Sum_probs=55.9

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE  301 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh  301 (326)
                      ++|+++|.++...+++.+++|+.|++++|++++++|+.++.+++|++++++.+++++.||
T Consensus         1 ~~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~~~~~~~~~~~lh   60 (60)
T cd04868           1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH   60 (60)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEeHHHHHHHHHHhC
Confidence            478999999989999999999999999999999998877799999999999999998886

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=98.85  E-value=2.1e-08  Score=74.93  Aligned_cols=64  Identities=19%  Similarity=0.239  Sum_probs=55.7

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHH-HHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA-VAEALESKFRE  306 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~-av~~Lh~~f~~  306 (326)
                      ++.|++.+.+|...+|+.+++|+.|+++||+++||+|  ++.++||++++++... .++.|.+++..
T Consensus         1 ~~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~--s~~~isftv~~~~~~~~~l~~l~~el~~   65 (73)
T cd04934           1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST--SEVHVSMALHMENAEDTNLDAAVKDLQK   65 (73)
T ss_pred             CEEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEehhhcChHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999996  5799999999987654 67777666544

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>PRK08210 aspartate kinase I; Reviewed

Probab=98.85  E-value=1.2e-08  Score=100.33  Aligned_cols=138  Identities=20%  Similarity=0.298  Sum_probs=96.3

Q ss_pred             eEEeeecHHHHHHHhh-cC---CcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEee
Q 020431          163 VILRTLSYQEAWEMSY-FG---ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI  238 (326)
Q Consensus       163 ~~i~~ls~~e~~~l~~-~g---~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~  238 (326)
                      +.++-+++.+-..+.. .+   ..+...+.+..+.++||++...+... + ..+..... .+-+.........-..+.+.
T Consensus       260 ~~v~~It~~~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~-~is~~v~~-~~~~~a~~~l~~~~~~v~~~  336 (403)
T PRK08210        260 RLITGIAHVSNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-T-EVVFTVSD-EDSEKAKEILENLGLKPSVR  336 (403)
T ss_pred             CceEEEEEcCCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-c-eEEEEEcH-HHHHHHHHHHHHhCCcEEEe
Confidence            3566666543322221 11   13455567888899999988877663 2 23322221 11000000000011157888


Q ss_pred             cCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHH
Q 020431          239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       239 ~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      +|+++|+++|.+|++.||+++++|++|+++||++.+++  +|+.+++|+|++++.+++++.||++|+
T Consensus       337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~--~s~~~is~vv~~~~~~~a~~~Lh~~f~  401 (403)
T PRK08210        337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSA--DSHTTIWVLVKEEDMEKAVNALHDAFE  401 (403)
T ss_pred             CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEe--cCCCEEEEEEcHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999876  589999999999999999999999984

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=98.82  E-value=2.7e-08  Score=75.24  Aligned_cols=63  Identities=16%  Similarity=0.324  Sum_probs=54.3

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHH------HHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK------AVAEALESKFR  305 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~------~av~~Lh~~f~  305 (326)
                      +++|++.+.++.+.||+.+++|+.|+++||+++||+|  ++.++||++++++..      ..++.|-++|.
T Consensus         1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~sISftV~~sd~~~~~~~~~~l~~~~~~~~   69 (78)
T cd04933           1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHVVEELE   69 (78)
T ss_pred             CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEhhhhhhhhhHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999996  679999999999873      45556655553

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=98.78  E-value=5.6e-08  Score=73.01  Aligned_cols=64  Identities=27%  Similarity=0.387  Sum_probs=54.5

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEcccc--HHH-HHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKE--VKA-VAEALESKFRE  306 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d--~~~-av~~Lh~~f~~  306 (326)
                      +++|++.+.++.+.+|+.+++|+.|+++||+++||+|  ++.++||++++.+  ... .++.|-+++..
T Consensus         1 ~~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~isftv~~~~~~~~~~~~~~l~~el~~   67 (75)
T cd04935           1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVST--SETNVTVSLDPDPNGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEeCcccccchHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999996  5799999999987  343 66666665533

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]

Probab=98.77  E-value=8.8e-09  Score=88.58  Aligned_cols=83  Identities=25%  Similarity=0.350  Sum_probs=70.6

Q ss_pred             chHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEecc
Q 020431          126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF  205 (326)
Q Consensus       126 sD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~  205 (326)
                      ||.+++++|+.+++.++++.|||||||+.+|+    ++++++|+..|...    |-..++|-+-+++.++++.++++|+.
T Consensus       118 SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~----~~t~vD~~~P~Ll~k~~m~~~Vvng~  189 (212)
T COG2054         118 SDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT----GETSVDPYLPKLLVKYKMNCRVVNGK  189 (212)
T ss_pred             ccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc----CcccccchhhHHHHHcCCceEEECCC
Confidence            69999999999999999999999999998864    58999887776532    66788998889999999999999998


Q ss_pred             CCC----------CCceEEeC
Q 020431          206 NLS----------VPGIMICR  216 (326)
Q Consensus       206 ~~~----------~~GT~I~~  216 (326)
                      .|+          ..||.|.+
T Consensus       190 ~pervi~~lrGk~~v~T~Ivg  210 (212)
T COG2054         190 EPERVILALRGKEVVGTLIVG  210 (212)
T ss_pred             CHHHHHHHHhccccceEEEeC
Confidence            664          35777754

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=98.64  E-value=1.5e-07  Score=67.56  Aligned_cols=60  Identities=22%  Similarity=0.274  Sum_probs=54.2

Q ss_pred             EEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHH
Q 020431          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF  304 (326)
Q Consensus       243 ~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f  304 (326)
                      .|++.+.+|.+.+|+.+++|+.|++++|+++||+|  ++.++||+++..+.++.++.|-+++
T Consensus         2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890           2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEEehhhhhHHHHHHHHhh
Confidence            57899999999999999999999999999999984  6799999999998888888776653

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]

Probab=98.55  E-value=6.6e-07  Score=82.33  Aligned_cols=116  Identities=22%  Similarity=0.311  Sum_probs=88.0

Q ss_pred             HHHHHHhhcCCCcEEEecCccccCCCCCcccccCC----------cchHHHHHHHHhhccceEEEeeccCcccccCCCCC
Q 020431           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD----------GSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV  159 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrg----------gsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~  159 (326)
                      +.|+.+++  .|.++|..|=      |.+.++..+          +-|.+++.||..++||.++|+||||+||-.=-+  
T Consensus       175 ~~Ik~L~~--~g~vVI~~GG------GGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gk--  244 (312)
T COG0549         175 EAIKALLE--SGHVVIAAGG------GGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGK--  244 (312)
T ss_pred             HHHHHHHh--CCCEEEEeCC------CCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCC--
Confidence            67888887  7888887662      223222222          259999999999999999999999999986433  


Q ss_pred             CCCeEEeeecHHHHHHHhh---cCCcccchh---hHHHHHhCCCCEEEEeccCC-----CCCceEEe
Q 020431          160 SEAVILRTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMIC  215 (326)
Q Consensus       160 ~~a~~i~~ls~~e~~~l~~---~g~~v~~~~---a~~~a~~~~I~v~I~n~~~~-----~~~GT~I~  215 (326)
                      |+.+.++.++.+|+++...   |..+-|-||   |+......|-+..|.+..+.     ...||.|.
T Consensus       245 p~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~ItsLe~~~~~l~g~~GT~I~  311 (312)
T COG0549         245 PNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITSLENAEAALEGKAGTVIV  311 (312)
T ss_pred             ccchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECcHHHHHHHhccCCCcEec
Confidence            6788999999999988775   445788886   67777777888888876532     24688885

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=98.54  E-value=3.7e-07  Score=64.16  Aligned_cols=57  Identities=35%  Similarity=0.599  Sum_probs=50.5

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCc---cEEEEEEccccHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAVPEKEVKAVAEAL  300 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se---~sIs~~V~~~d~~~av~~L  300 (326)
                      ++|+++|  +.+.+|+.+++|+.|+++||++++++|+.++   .+++|++++++..++++.|
T Consensus         1 ~~v~v~~--~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~~~~~~~~~~l   60 (61)
T cd04891           1 AQVTIKG--VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSDLEKALAIL   60 (61)
T ss_pred             CEEEEec--CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeHHHHHHHHHHh
Confidence            4678877  6788999999999999999999999998765   8899999999999887765

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=98.52  E-value=4.5e-07  Score=66.58  Aligned_cols=61  Identities=34%  Similarity=0.550  Sum_probs=54.3

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC---ccEEEEEEccccHHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESK  303 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s---e~sIs~~V~~~d~~~av~~Lh~~  303 (326)
                      +++|+++|  +.+.+|+.+++|+.|+++||++++++|+.+   +.+++|++++++.+++++.||+.
T Consensus         1 ~~~v~v~~--~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~~d~~~~~~~l~~~   64 (75)
T cd04913           1 QAKITLRG--VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKKALAVLEKL   64 (75)
T ss_pred             CeEEEECC--CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecHHHHHHHHHHHHHH
Confidence            46889977  678899999999999999999999999765   35799999999999999999984

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=98.34  E-value=3e-06  Score=62.12  Aligned_cols=57  Identities=21%  Similarity=0.337  Sum_probs=48.1

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      +.|++.|  ..+.+++.+++|+.|+++||+++||+|. ++ ++||+++..+.+++.+.|.+
T Consensus         2 ~~vtv~~--~~~~~~~~a~if~~La~~~InvDmI~~~-~~-~isFtv~~~d~~~~~~il~~   58 (67)
T cd04914           2 TQIKVKA--KDNENDLQQRVFKALANAGISVDLINVS-PE-EVIFTVDGEVAEKAVDILEK   58 (67)
T ss_pred             eEEEEec--CCCCccHHHHHHHHHHHcCCcEEEEEec-CC-CEEEEEchhhHHHHHHHHHH
Confidence            5788887  4466999999999999999999999876 34 79999999999998666544

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=97.77  E-value=0.00011  Score=54.53  Aligned_cols=65  Identities=20%  Similarity=0.254  Sum_probs=57.1

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      ..|.+.+++|.+.+|+.++||+.|+++++++.+..+++.+.++++..+.+.+++++..|.+.|..
T Consensus         2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p~   66 (71)
T cd04910           2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFPN   66 (71)
T ss_pred             eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCcc
Confidence            45788999999999999999999999999999998777777777777788999999999987753

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase

>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=97.53  E-value=0.00041  Score=52.06  Aligned_cols=73  Identities=10%  Similarity=0.209  Sum_probs=55.4

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHH-HHHHHHHHHHHHhcCCCCcceEEE
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA-VAEALESKFREALNAGRLSQVCLS  319 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~-av~~Lh~~f~~~~~~~~~~~v~~~  319 (326)
                      +.|++.-..|....||..|++++|.++||+++++.  ++..++|++++++++.. .++.+-+++..++.-+   .++++
T Consensus         2 ~~I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~P--SGID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD---~i~v~   75 (76)
T cd04911           2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHMP--SGIDDISIIIRDNQLTDEKEQKILAEIKEELHPD---EIEII   75 (76)
T ss_pred             ceEehhHhhccchhcHHHHHHHHHHHcCCCEeeec--CCCccEEEEEEccccchhhHHHHHHHHHHhcCCC---EEEEe
Confidence            45677778889999999999999999999999997  78999999999996655 4444444444444333   35554

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08841 aspartate kinase; Validated

Probab=97.38  E-value=0.00078  Score=66.13  Aligned_cols=76  Identities=16%  Similarity=0.131  Sum_probs=61.4

Q ss_pred             CCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhc
Q 020431          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN  309 (326)
Q Consensus       230 ~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~  309 (326)
                      ..+++|+..+|+++|++.|.       .++++|+.|+++||++++++|  ++.+++|++++.++.++.    ..      
T Consensus       247 ~~i~~i~~~~~~~~i~v~~~-------~~~~i~~~l~~~~i~v~~i~~--~~~~~~~~v~~~~~~~~~----~~------  307 (392)
T PRK08841        247 QAVCGIALQRDLALIEVESE-------SLPSLTKQCQMLGIEVWNVIE--EADRAQIVIKQDACAKLK----LV------  307 (392)
T ss_pred             CcEEEEEEeCCeEEEEeccc-------hHHHHHHHHHHcCCCEEEEEe--cCCcEEEEECHHHHHHHH----Hh------
Confidence            46999999999999999763       368999999999999999985  578899999987765541    11      


Q ss_pred             CCCCcceEEEcCeeecC
Q 020431          310 AGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       310 ~~~~~~v~~~~~~~~~~  326 (326)
                        ..+++.+++++++|+
T Consensus       308 --~~~~i~~~~~~a~vs  322 (392)
T PRK08841        308 --FDDKIRNSESVSLLT  322 (392)
T ss_pred             --CcccEEEeCCEEEEE
Confidence              134688999999874

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=97.04  E-value=0.0012  Score=46.94  Aligned_cols=53  Identities=26%  Similarity=0.391  Sum_probs=43.4

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCcc-----EEEEEEccccHHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSEH-----SVCFAVPEKEVKAVAEALESK  303 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~-----sIs~~V~~~d~~~av~~Lh~~  303 (326)
                      +.++||+++++++.|+++|+||..+.|.++..     .+.+..++.+..++++.|++.
T Consensus         7 ~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   64 (66)
T PF01842_consen    7 VPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEAL   64 (66)
T ss_dssp             EETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcc
Confidence            56899999999999999999999999887643     333445566899999998874

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=96.97  E-value=0.0028  Score=48.80  Aligned_cols=76  Identities=18%  Similarity=0.142  Sum_probs=56.9

Q ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC--ccEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceE
Q 020431          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVC  317 (326)
Q Consensus       240 ~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s--e~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~  317 (326)
                      ..++|++.|.   ++||+.+.+++.|+++|+||.=|||..-  -.++-++|+-.....-..++.+++..+.+... -.|.
T Consensus         2 ~~avITV~Gk---Dr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lg-v~V~   77 (90)
T COG3830           2 MRAVITVIGK---DRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAEGKKLG-VDVR   77 (90)
T ss_pred             ceEEEEEEcC---CCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHHHHhcC-cEEE
Confidence            4689999985   6899999999999999999999999764  45666667766666667777777766555444 2344


Q ss_pred             EE
Q 020431          318 LS  319 (326)
Q Consensus       318 ~~  319 (326)
                      +|
T Consensus        78 vq   79 (90)
T COG3830          78 VQ   79 (90)
T ss_pred             Ee
Confidence            44

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.34  E-value=0.02  Score=42.04  Aligned_cols=53  Identities=17%  Similarity=0.330  Sum_probs=41.3

Q ss_pred             CCcccHHHHHHHHHHhCCCcEEEEEecCC---ccEEEEEEccccHHHHHHHHHHHH
Q 020431          252 AGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESKF  304 (326)
Q Consensus       252 ~~~~~i~a~if~~L~~~~I~v~~Isq~~s---e~sIs~~V~~~d~~~av~~Lh~~f  304 (326)
                      .+.||.++++++.|+++|+++.+++|...   ...++|.++..+.+..++.|.+.+
T Consensus         8 ~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L   63 (76)
T cd04888           8 EHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEEL   63 (76)
T ss_pred             cCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHH
Confidence            45799999999999999999999998432   356889998887775555555543

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3603 Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.036  Score=44.77  Aligned_cols=71  Identities=17%  Similarity=0.213  Sum_probs=60.2

Q ss_pred             CCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHH
Q 020431          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (326)
Q Consensus       230 ~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~  303 (326)
                      +....|....+-..+.+.|.--.+.+|+++.+.+.|++.||.|..+|.-  .. =-++|.++|++++++.|.+.
T Consensus        52 ~vp~~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavSty--dt-DhiLVr~~dLekAv~~L~ea  122 (128)
T COG3603          52 RVPDVVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTY--DT-DHILVREEDLEKAVKALEEA  122 (128)
T ss_pred             cCCcceEecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEec--cC-ceEEEehhhHHHHHHHHHHc
Confidence            4455678888999999999988899999999999999999999999832  22 23678999999999999873

>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]

Probab=96.04  E-value=0.011  Score=58.83  Aligned_cols=118  Identities=13%  Similarity=0.072  Sum_probs=83.1

Q ss_pred             ccchHHHHHHHHHHHHHcCCceEEEccccee--eccC--------CCCC---C-CCCCchhhHHHHHHHhhcCCCcEEEe
Q 020431           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNP--------TSSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIA  106 (326)
Q Consensus        41 ~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~--~~~~--------~~~g---~-~~~~~~~~~~~i~~~l~~~~~~ipVv  106 (326)
                      -+||.--  -+...|+++|-.+++.+.....  .+..        ..||   + .+++.    ++++.+++  .|.+|++
T Consensus       170 ~~~E~n~--~lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~----d~i~~l~~--~G~mp~L  241 (520)
T KOG2436|consen  170 VSLEANL--NLVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDV----DRIRHLLD--AGSMPLL  241 (520)
T ss_pred             chhhhhh--HHHHHHHHhhceeccccccccccceeecccccccccceeeeecccceech----hhhhhhhh--CCCchhe
Confidence            4577733  3788899999998888765322  1111        1122   1 23444    88888887  8999998


Q ss_pred             cCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHH
Q 020431          107 TGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM  176 (326)
Q Consensus       107 ~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l  176 (326)
                      ... +.+..|+++|+.   +|..|..+|..|+|++++..+|+ |-.-.     .+.+.+..++..|...+
T Consensus       242 ~sl-a~TaSGqvlnvN---a~~~a~elA~~L~~~kli~l~d~-g~~l~-----e~ge~~S~l~l~~e~~~  301 (520)
T KOG2436|consen  242 RSL-AATASGQVLNVN---ADEVAGELALALGPDKLILLMDK-GRILK-----ENGEDISSLILQEEDAG  301 (520)
T ss_pred             hhh-cccCccceEEee---HHHHhhHHHhccCcceeEEeccc-ccccc-----cCcccccccccchhHhh
Confidence            885 889999999885   89999999999999999999998 55433     23445555555444433

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=95.96  E-value=0.0079  Score=58.00  Aligned_cols=93  Identities=16%  Similarity=0.255  Sum_probs=73.8

Q ss_pred             ccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHH--HHH-HHHHHHH
Q 020431          228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK--AVA-EALESKF  304 (326)
Q Consensus       228 ~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~--~av-~~Lh~~f  304 (326)
                      .+..+..|+.++|+.++.|....|....||++++|.+|.+.|+.|+.|+  +||.+||+.++..+..  .++ +.||+.+
T Consensus       380 ~k~~~TsI~lK~nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDvva--TSEV~iSltL~~~~~~sreliq~~l~~a~  457 (559)
T KOG0456|consen  380 SKAGLTSIVLKRNVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVA--TSEVSISLTLDPSKLDSRELIQGELDQAV  457 (559)
T ss_pred             hhccceEEEEeccEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEEEE--eeeEEEEEecChhhhhhHHHHHhhHHHHH
Confidence            3467889999999999999999999999999999999999999999999  8999999999987543  333 6666644


Q ss_pred             HHHhcCCCCcceEEEcCeeec
Q 020431          305 REALNAGRLSQVCLSFWLCDY  325 (326)
Q Consensus       305 ~~~~~~~~~~~v~~~~~~~~~  325 (326)
                      . ++  +.+..|..-.+++|+
T Consensus       458 e-eL--~ki~~vdll~~~sIi  475 (559)
T KOG0456|consen  458 E-EL--EKIAVVDLLKGRSII  475 (559)
T ss_pred             H-HH--HHhhhhhhhccchHH
Confidence            2 22  335556665666554

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.26  E-value=0.081  Score=34.64  Aligned_cols=48  Identities=25%  Similarity=0.450  Sum_probs=37.9

Q ss_pred             CcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEccc-cHHHHHHHH
Q 020431          253 GVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEK-EVKAVAEAL  300 (326)
Q Consensus       253 ~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~~-d~~~av~~L  300 (326)
                      +.+|.++++++.|+++++++..+.+...    ...+++.++.. +...+++.|
T Consensus         7 ~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   59 (60)
T cd02116           7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL   59 (60)
T ss_pred             CCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence            4689999999999999999999987543    36677888877 566666554

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=95.05  E-value=0.11  Score=38.54  Aligned_cols=59  Identities=25%  Similarity=0.314  Sum_probs=39.4

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEE--EEEEccccHHHHHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSV--CFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sI--s~~V~~~d~~~av~~Lh~~f~  305 (326)
                      .+|++.|.   ++||+.+++++.|+++|.||.-+.|..-+...  .+.++-.  +.....|.+.+.
T Consensus         3 ~vItv~G~---DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--~~~~~~l~~~L~   63 (76)
T PF13740_consen    3 LVITVVGP---DRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--EDSLERLESALE   63 (76)
T ss_dssp             EEEEEEEE-----TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--HHHHHHHHHHHH
T ss_pred             EEEEEEec---CCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--cccHHHHHHHHH
Confidence            57899985   68999999999999999999999987754444  4444333  223444444443

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=94.98  E-value=0.15  Score=36.68  Aligned_cols=52  Identities=19%  Similarity=0.270  Sum_probs=38.8

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      +.+.||.++++.+.|+++|+||..+.-...+....+-+.-++.+++.+.|.+
T Consensus         8 v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~   59 (66)
T cd04908           8 LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE   59 (66)
T ss_pred             EcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence            6789999999999999999999766533333345555555666788888765

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=94.82  E-value=0.21  Score=42.32  Aligned_cols=62  Identities=15%  Similarity=0.321  Sum_probs=45.5

Q ss_pred             cCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCc---cEEEEEEccccHHHHHHHHHHH
Q 020431          239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAVPEKEVKAVAEALESK  303 (326)
Q Consensus       239 ~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se---~sIs~~V~~~d~~~av~~Lh~~  303 (326)
                      ...+.+++.   +.+.||+++++++.++++|+||..|+|....   .+++|.++..+....++.|-+.
T Consensus        67 ~r~vtL~i~---l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~  131 (147)
T PRK04435         67 GKIITLSLL---LEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEK  131 (147)
T ss_pred             CcEEEEEEE---EecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHH
Confidence            445666666   4567999999999999999999999986532   5678888777665444444443

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=94.53  E-value=0.16  Score=38.84  Aligned_cols=52  Identities=19%  Similarity=0.208  Sum_probs=40.4

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCcc----EEEEEEc-cc--cHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSEH----SVCFAVP-EK--EVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~----sIs~~V~-~~--d~~~av~~Lh~  302 (326)
                      ..+.||+++|+...|++.|.||+.++-+.++.    .++++++ .+  .++++.+.|++
T Consensus         9 VeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~K   67 (84)
T PRK13562          9 VADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQ   67 (84)
T ss_pred             EECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhC
Confidence            45789999999999999999999999776643    6778885 33  34566666665

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=94.41  E-value=0.26  Score=42.95  Aligned_cols=57  Identities=16%  Similarity=0.228  Sum_probs=44.2

Q ss_pred             EEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecC----CccEEEEEEccc--cHHHHHHHHHH
Q 020431          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS----SEHSVCFAVPEK--EVKAVAEALES  302 (326)
Q Consensus       243 ~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~----se~sIs~~V~~~--d~~~av~~Lh~  302 (326)
                      .+++.+   .++||+++|+...|+++|+||+.++-+.    ....++++++..  .++++.+.|++
T Consensus         4 ~isvlv---~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~K   66 (174)
T CHL00100          4 TLSVLV---EDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYK   66 (174)
T ss_pred             EEEEEE---eCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHH
Confidence            356664   4689999999999999999999998554    245688888875  36677777766

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.68  E-value=0.28  Score=36.24  Aligned_cols=57  Identities=23%  Similarity=0.345  Sum_probs=39.1

Q ss_pred             EEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC--ccEEEEEEc--cc-cHHHHHHHHHH
Q 020431          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVP--EK-EVKAVAEALES  302 (326)
Q Consensus       243 ~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s--e~sIs~~V~--~~-d~~~av~~Lh~  302 (326)
                      +|++.|.   ++||+.+++.+.|+++|+||.-++|..-  ...+.+.+.  +. +...+.+.|..
T Consensus         1 ~vtv~G~---DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~   62 (75)
T cd04870           1 LITVTGP---DRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLF   62 (75)
T ss_pred             CEEEEcC---CCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHH
Confidence            3678874   6899999999999999999999876553  334444444  33 34444444443

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=93.20  E-value=0.4  Score=33.64  Aligned_cols=52  Identities=13%  Similarity=0.277  Sum_probs=36.0

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCc--cEEEEEEccccHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE--HSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se--~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      +.+.||.++++.+.|+++|+||..+.+....  ....+.+.-++.+++.+.|.+
T Consensus         6 ~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~   59 (65)
T cd04882           6 VPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE   59 (65)
T ss_pred             eCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH
Confidence            5688999999999999999999877643322  223333343446677776665

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=92.84  E-value=0.49  Score=37.10  Aligned_cols=58  Identities=14%  Similarity=0.240  Sum_probs=41.1

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEccc-cHHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEK-EVKAVAEALES  302 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~~-d~~~av~~Lh~  302 (326)
                      ..|++.   ..+.||+++|+...|++.|.||+.++-+.+    -..+++++.++ .++++.+.|++
T Consensus         9 ~tisvl---v~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Qi~kQL~K   71 (96)
T PRK08178          9 VILELT---VRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEK   71 (96)
T ss_pred             EEEEEE---EECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHHHHHHHhC
Confidence            345554   457899999999999999999999975554    24566677632 45555555555

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=92.77  E-value=0.5  Score=35.46  Aligned_cols=52  Identities=12%  Similarity=0.215  Sum_probs=39.8

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEccc-cHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEK-EVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~~-d~~~av~~Lh~  302 (326)
                      ..+.||+++|+...++..|.||+.++=+..    -..+.+++.++ .++.+.+.|++
T Consensus        10 v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ql~kQL~K   66 (76)
T PRK11152         10 ARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDLLSSQLNK   66 (76)
T ss_pred             EECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHHHHHHHhc
Confidence            457899999999999999999999986552    34777888643 45566666655

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=92.22  E-value=1.8  Score=35.27  Aligned_cols=109  Identities=21%  Similarity=0.257  Sum_probs=69.0

Q ss_pred             hhhHHHHHhCCCCEEEEeccCCCCCce--EEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHH
Q 020431          186 PRTIIPVMRYDIPIVIRNIFNLSVPGI--MICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFG  263 (326)
Q Consensus       186 ~~a~~~a~~~~I~v~I~n~~~~~~~GT--~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~  263 (326)
                      ..++..++++||.++-.+..+...-|.  .|.++++   ...+-..  =++++++    .-.+.+-.|.+.||-+++|..
T Consensus        18 ~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d---~A~~~Le--e~gF~Vr----~~dVlaVEmeD~PG~l~~I~~   88 (142)
T COG4747          18 ASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD---EAHSVLE--EAGFTVR----ETDVLAVEMEDVPGGLSRIAE   88 (142)
T ss_pred             HHHHHHHHHcCCceEEEEeccccCcceEEEEcCChH---HHHHHHH--HCCcEEE----eeeEEEEEecCCCCcHHHHHH
Confidence            356777888999988777665433442  2223221   0000000  0122222    112344458899999999999


Q ss_pred             HHHhCCCcEEEEEecCC-ccEEEEEEccccHHHHHHHHHHH
Q 020431          264 AVKDVGANVIMISQASS-EHSVCFAVPEKEVKAVAEALESK  303 (326)
Q Consensus       264 ~L~~~~I~v~~Isq~~s-e~sIs~~V~~~d~~~av~~Lh~~  303 (326)
                      .|.+++||++.|--..+ ...-.++++-+|.+++..+|.+.
T Consensus        89 vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~  129 (142)
T COG4747          89 VLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDA  129 (142)
T ss_pred             HHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHc
Confidence            99999999998864444 34455667778999999999873

>PRK00194 hypothetical protein; Validated

Probab=92.09  E-value=0.39  Score=36.65  Aligned_cols=37  Identities=22%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS  280 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s  280 (326)
                      ..++++.|.   +.||+++++.+.|+++|+||.-++|...
T Consensus         3 ~~~ltv~g~---DrpGiva~vt~~la~~g~nI~~~~~~~~   39 (90)
T PRK00194          3 KAIITVIGK---DKVGIIAGVSTVLAELNVNILDISQTIM   39 (90)
T ss_pred             eEEEEEEcC---CCCCHHHHHHHHHHHcCCCEEehhhHhh
Confidence            357888875   5899999999999999999999987653

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=91.84  E-value=0.4  Score=41.25  Aligned_cols=53  Identities=13%  Similarity=0.292  Sum_probs=41.4

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCc----cEEEEEEcc--ccHHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPE--KEVKAVAEALESK  303 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se----~sIs~~V~~--~d~~~av~~Lh~~  303 (326)
                      ..+.||+++++...|+++|+||..++-+.++    ..+.+.++.  ..++++.+.|++.
T Consensus         9 veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KL   67 (161)
T PRK11895          9 VENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKL   67 (161)
T ss_pred             EcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhcc
Confidence            5688999999999999999999888765543    236677763  3578888888874

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=91.71  E-value=0.51  Score=35.42  Aligned_cols=52  Identities=12%  Similarity=0.140  Sum_probs=38.2

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCc----cEEEEEEcc--ccHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPE--KEVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se----~sIs~~V~~--~d~~~av~~Lh~  302 (326)
                      ..+.||+++|+...|++.|.||+.++-+.++    ..+.+++..  ..++++.+.|++
T Consensus         9 v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~K   66 (76)
T PRK06737          9 IHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKK   66 (76)
T ss_pred             EecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhC
Confidence            3578999999999999999999999966543    245566443  346666666655

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=91.59  E-value=1.6  Score=31.28  Aligned_cols=52  Identities=23%  Similarity=0.364  Sum_probs=38.4

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEccccHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      +.+.||.++++.+.|+++|+|+..+.....    ...+.|-++..+.+.+.+.|.+
T Consensus         8 ~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~   63 (72)
T cd04883           8 VPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR   63 (72)
T ss_pred             ECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHH
Confidence            678899999999999999999987753322    2335666666666677777765

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=91.14  E-value=0.92  Score=31.13  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=32.6

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCc-cEEEEEEccccHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE-HSVCFAVPEKEVKAVAEAL  300 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se-~sIs~~V~~~d~~~av~~L  300 (326)
                      +.+.||.++++.+.|+++|+|+..+.-...+ ..-.+.+.=++.+++.+.|
T Consensus         5 ~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l   55 (56)
T cd04889           5 VENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL   55 (56)
T ss_pred             eCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence            5678999999999999999999766532322 1122222333466666554

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=91.06  E-value=1.1  Score=33.27  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=30.1

Q ss_pred             EEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecC
Q 020431          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS  279 (326)
Q Consensus       243 ~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~  279 (326)
                      +|++.|+   ++||+.+++.+.|+++|.||.-++|..
T Consensus         3 iltv~g~---Dr~GiVa~vs~~la~~g~nI~d~~q~~   36 (77)
T cd04893           3 VISALGT---DRPGILNELTRAVSESGCNILDSRMAI   36 (77)
T ss_pred             EEEEEeC---CCChHHHHHHHHHHHcCCCEEEceeeE
Confidence            5788874   689999999999999999999998865

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=91.03  E-value=0.95  Score=32.38  Aligned_cols=52  Identities=13%  Similarity=0.196  Sum_probs=37.2

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEcc-ccHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE-KEVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~-~d~~~av~~Lh~  302 (326)
                      +.+.||.++++.+.|+++|+++..+.+...    ...+.+.++. .+.+++.+.|.+
T Consensus         8 ~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~   64 (69)
T cd04909           8 VPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE   64 (69)
T ss_pred             cCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence            668999999999999999999987654332    3345566652 356666666654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=90.84  E-value=1.3  Score=33.58  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS  280 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s  280 (326)
                      .+|++.|+   +.||+++++.+.|+++|+||.-++|.+.
T Consensus         2 ~vl~i~g~---D~pGiva~vt~~la~~g~nI~~~~~~~~   37 (88)
T cd04872           2 AVITVVGK---DRVGIVAGVSTKLAELNVNILDISQTIM   37 (88)
T ss_pred             EEEEEEcC---CCCCHHHHHHHHHHHcCCCEEechhHhh
Confidence            46788875   5899999999999999999999998763

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=90.63  E-value=1.7  Score=32.04  Aligned_cols=34  Identities=21%  Similarity=0.288  Sum_probs=28.7

Q ss_pred             EEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC
Q 020431          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS  280 (326)
Q Consensus       244 IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s  280 (326)
                      |++.|.   +.||+++++.+.|+++|+||.-+++.+.
T Consensus         2 l~v~g~---D~~Giv~~it~~l~~~~~nI~~~~~~~~   35 (81)
T cd04869           2 VEVVGN---DRPGIVHEVTQFLAQRNINIEDLSTETY   35 (81)
T ss_pred             EEEEeC---CCCCHHHHHHHHHHHcCCCeEEeEeeee
Confidence            567764   5899999999999999999999987543

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=90.24  E-value=0.79  Score=39.29  Aligned_cols=52  Identities=15%  Similarity=0.303  Sum_probs=36.6

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCc----cEEEEEEccc--cHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se----~sIs~~V~~~--d~~~av~~Lh~  302 (326)
                      ..+.||+++++...|+++|+||..++-+.++    ..+++.++..  .++++.+.|++
T Consensus         8 ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~K   65 (157)
T TIGR00119         8 VENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNK   65 (157)
T ss_pred             EcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhc
Confidence            5678999999999999999999888755543    2366667652  34444444444

acetohydroxyacid synthase is a synonym.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=90.07  E-value=2.1  Score=31.19  Aligned_cols=33  Identities=21%  Similarity=0.405  Sum_probs=28.9

Q ss_pred             EEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEec
Q 020431          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA  278 (326)
Q Consensus       243 ~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~  278 (326)
                      +|++.|.   ++||+++++.+.|+++|+||.-++|.
T Consensus         1 ii~v~g~---D~~Giv~~it~~l~~~g~nI~~~~~~   33 (74)
T cd04875           1 ILTLSCP---DRPGIVAAVSGFLAEHGGNIVESDQF   33 (74)
T ss_pred             CEEEEcC---CCCCHHHHHHHHHHHcCCCEEeeeee
Confidence            3677764   68999999999999999999999876

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=89.70  E-value=1.3  Score=31.18  Aligned_cols=52  Identities=13%  Similarity=0.223  Sum_probs=38.8

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEccccHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      ..+.||.++++.+.|+++|+++..+.+...    ...+.+.++..+.+++++.|.+
T Consensus         6 ~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~   61 (71)
T cd04903           6 HKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKK   61 (71)
T ss_pred             eCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHc
Confidence            357899999999999999999988765431    2235666777677777777765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=89.31  E-value=1.9  Score=30.34  Aligned_cols=52  Identities=21%  Similarity=0.463  Sum_probs=34.7

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCC-------ccEEEEEEccc---cHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASS-------EHSVCFAVPEK---EVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~s-------e~sIs~~V~~~---d~~~av~~Lh~  302 (326)
                      +.+.||.++++.+.++++|++|.-+.+...       ...+.+.++-.   +++.+++.|.+
T Consensus         5 ~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~   66 (73)
T cd04886           5 LPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE   66 (73)
T ss_pred             eCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence            457899999999999999999987765432       12344444433   44455555544

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=87.50  E-value=1.9  Score=31.53  Aligned_cols=50  Identities=22%  Similarity=0.305  Sum_probs=34.2

Q ss_pred             CCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEc------cccHHHHHHHHHH
Q 020431          252 AGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVP------EKEVKAVAEALES  302 (326)
Q Consensus       252 ~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~------~~d~~~av~~Lh~  302 (326)
                      .+.||.++++++.|+++|+|+..|. +..    .....|.++      +...+++++.|.+
T Consensus         7 ~d~pG~L~~vL~~f~~~~vni~~I~-Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~   66 (75)
T cd04880           7 KNKPGALAKALKVFAERGINLTKIE-SRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR   66 (75)
T ss_pred             CCcCCHHHHHHHHHHHCCCCEEEEE-eeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence            4679999999999999999999994 332    223444433      2245566666654

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=87.29  E-value=1.1  Score=38.56  Aligned_cols=54  Identities=13%  Similarity=0.268  Sum_probs=43.4

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEcc--ccHHHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE--KEVKAVAEALESKF  304 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~--~d~~~av~~Lh~~f  304 (326)
                      ..+.||+++|+...|++.|.|+++++-+..    ...+.+++..  ..++++.+.||+..
T Consensus        11 v~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLi   70 (163)
T COG0440          11 VENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLI   70 (163)
T ss_pred             EECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhc
Confidence            347899999999999999999999986654    4567777776  34899999998843

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=85.52  E-value=4.1  Score=28.59  Aligned_cols=51  Identities=16%  Similarity=0.348  Sum_probs=34.9

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCC---ccEEEEEEccc-cHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEK-EVKAVAEALE  301 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~s---e~sIs~~V~~~-d~~~av~~Lh  301 (326)
                      +.+.+|.++++.+.|+++++++.-+.+...   ...+.+.++.. ....+++.|.
T Consensus         7 ~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~L~   61 (72)
T cd04874           7 AEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGVGDIEELVEELR   61 (72)
T ss_pred             eCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEeccccHHHHHHHHh
Confidence            457899999999999999999987765432   22355556554 3444444444

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=84.49  E-value=3.8  Score=28.67  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=35.4

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEccc--cHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEK--EVKAVAEALE  301 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~~--d~~~av~~Lh  301 (326)
                      ..+.+|.++++...|+++++++..+.+...    ...+.+.+...  ++..++..|.
T Consensus         7 ~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   63 (72)
T cd04878           7 VENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLN   63 (72)
T ss_pred             EcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHh
Confidence            357889999999999999999998886542    23466666653  3444444443

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=84.46  E-value=3.7  Score=28.54  Aligned_cols=52  Identities=17%  Similarity=0.227  Sum_probs=35.6

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEccccHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      ..+.+|.++++.+.|+++|+++..+.....    ...+.+.++.....++++.|.+
T Consensus         6 ~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~   61 (71)
T cd04879           6 HKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKA   61 (71)
T ss_pred             ecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCCCHHHHHHHHc
Confidence            457899999999999999999987754332    2224555655454555555544

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=84.28  E-value=5.5  Score=29.34  Aligned_cols=57  Identities=16%  Similarity=0.338  Sum_probs=37.1

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEccccHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALE  301 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~~d~~~av~~Lh  301 (326)
                      +.|.+.+   .+++|++++|.+.+++.|+||..++....    ...+.|.+.-.+.+.+-+.+.
T Consensus         7 ~~l~i~~---~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~   67 (80)
T PF13291_consen    7 VRLRIEA---EDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIR   67 (80)
T ss_dssp             EEEEEEE---E--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHH
T ss_pred             EEEEEEE---EcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHH
Confidence            4455654   46899999999999999999999986653    124555555555544444443

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=83.67  E-value=6  Score=28.83  Aligned_cols=45  Identities=9%  Similarity=0.168  Sum_probs=33.4

Q ss_pred             CCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHH
Q 020431          252 AGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVA  297 (326)
Q Consensus       252 ~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av  297 (326)
                      .+++|+++++.+.+++.|+|+..+.+.+. ..+.+.+.-.+...+-
T Consensus         8 ~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~~~~~L~   52 (74)
T cd04877           8 EDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTIEFEKLQ   52 (74)
T ss_pred             EccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEecCHHHHH
Confidence            36799999999999999999999987553 3356555555555443

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=83.35  E-value=4.3  Score=35.86  Aligned_cols=60  Identities=20%  Similarity=0.245  Sum_probs=44.4

Q ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC--ccEEEEEEccccHHHHHHHHHHHH
Q 020431          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPEKEVKAVAEALESKF  304 (326)
Q Consensus       240 ~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s--e~sIs~~V~~~d~~~av~~Lh~~f  304 (326)
                      ...+||++|.   ++||+.+++.+.|+++|.||.=++|..-  +....+++....  ..+..|...+
T Consensus         7 ~~lviTviG~---DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~--~~~~~le~~L   68 (190)
T PRK11589          7 HYLVITALGA---DRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW--NAITLIESTL   68 (190)
T ss_pred             cEEEEEEEcC---CCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh--hHHHHHHHHH
Confidence            5678999995   6899999999999999999998887543  566666775442  2444444444

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=83.15  E-value=3.3  Score=38.86  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=30.7

Q ss_pred             EEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecC
Q 020431          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS  279 (326)
Q Consensus       243 ~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~  279 (326)
                      +|++.|.   ++||+.+++.+.|+++|+||.-++|..
T Consensus         2 ~itv~g~---D~~GIVA~Vt~~La~~g~NI~d~sq~~   35 (280)
T TIGR00655         2 ILLVSCP---DQKGLVAAISTFIAKHGANIISNDQHT   35 (280)
T ss_pred             EEEEECC---CCCChHHHHHHHHHHCCCCEEeeeEEE
Confidence            5788874   689999999999999999999999876

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=82.99  E-value=7.6  Score=27.59  Aligned_cols=52  Identities=19%  Similarity=0.323  Sum_probs=36.3

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEccc---cHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEK---EVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~~---d~~~av~~Lh~  302 (326)
                      +.+.+|.++++...|+++|+++.-+.+...    ...+.+.+...   +++.+++.|++
T Consensus         7 ~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~   65 (79)
T cd04881           7 VKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEA   65 (79)
T ss_pred             eCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHc
Confidence            457889999999999999999998875432    23455655544   45555555554

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=81.87  E-value=1.3  Score=31.49  Aligned_cols=52  Identities=17%  Similarity=0.193  Sum_probs=37.9

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecC--CccEEEEEEccccHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQAS--SEHSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~--se~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      ..+.||.++++.+.++++|+|+..+...+  ....+.+.++..+.+.+++.|.+
T Consensus         6 ~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~~l~~li~~l~~   59 (69)
T cd04901           6 HKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSEVSEELLEALRA   59 (69)
T ss_pred             ecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCCCCHHHHHHHHc
Confidence            45789999999999999999987665433  23334555666677777777765

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=81.49  E-value=3  Score=29.82  Aligned_cols=50  Identities=24%  Similarity=0.398  Sum_probs=36.3

Q ss_pred             CcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEccc--cHHHHHHHHHH
Q 020431          253 GVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEK--EVKAVAEALES  302 (326)
Q Consensus       253 ~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~~--d~~~av~~Lh~  302 (326)
                      +.||++.|+...+.+.|.|+..++=+.+    -..+.+++..+  .++.+.+.|++
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhc
Confidence            4689999999999999999999885542    35667777663  56666666665

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=80.40  E-value=7.2  Score=36.66  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=32.0

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecC
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS  279 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~  279 (326)
                      ..+|+++|.   ++||+.+++.+.|+++|+||.-++|..
T Consensus         6 ~~vitv~G~---DrpGIVa~Vt~~La~~g~NI~d~s~~~   41 (286)
T PRK06027          6 RYVLTLSCP---DRPGIVAAVSNFLYEHGGNIVDADQFV   41 (286)
T ss_pred             eEEEEEECC---CCCcHHHHHHHHHHHCCCCEEEceeEE
Confidence            467899985   689999999999999999999998765

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=80.24  E-value=4.9  Score=37.93  Aligned_cols=35  Identities=17%  Similarity=0.359  Sum_probs=31.6

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEec
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA  278 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~  278 (326)
                      -.+|++.|.   ++||+.+++.+.|+++|+||.-++|-
T Consensus         9 ~~iitv~G~---Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          9 SYVLTLACP---SAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             CEEEEEECC---CCCCcHHHHHHHHHHCCCCEEecccc
Confidence            468999985   68999999999999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	326
2hmf_A	469	Structure Of A Threonine Sensitive Aspartokinase Fr		1e-43
2hmf_A	469	Structure Of A Threonine Sensitive Aspartokinase Fr		5e-05
3c1n_C	473	Crystal Structure Of Allosteric Inhibition Threonin		1e-43
3c1n_C	473	Crystal Structure Of Allosteric Inhibition Threonin		5e-05
2j0x_A	449	Crystal Structure Of E. Coli Aspartokinase Iii In C		1e-26
2cdq_A	510	Crystal Structure Of Arabidopsis Thaliana Aspartate		9e-25
3tvi_A	446	Crystal Structure Of Clostridium Acetobutylicum Asp		5e-18
3aaw_A	421	Crystal Structure Of Aspartate Kinase From Coryneba		3e-13
3ab4_A	421	Crystal Structure Of Feedback Inhibition Resistant		3e-13
3l76_A	600	Crystal Structure Of Aspartate Kinase From Synechoc		3e-13
2ij9_A	219	Crystal Structure Of Uridylate Kinase From Archaeog		4e-04
3ek5_A	243	Unique Gtp-Binding Pocket And Allostery Of Ump Kina		6e-04

>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/260 (39%), Positives = 143/260 (55%), Gaps = 13/260 (5%)
Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 114 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 173
Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 174 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 229
Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 230 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 289
Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 290 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 342
Query: 267 DVGANVIMISQASSEHSVCF 286
           +   NVI+ISQ SSE ++  
Sbjct: 343 EEEVNVILISQGSSETNISL 362

>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
           ++ +++V G GM G  G A  IF AV + GAN+ MI+Q SSE ++ F
Sbjct: 402 DVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISF 448

>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473

Iteration: 1
 Score =  173 bits (438), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/260 (39%), Positives = 143/260 (55%), Gaps = 13/260 (5%)
Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 115 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 174
Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 175 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230
Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290
Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 291 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 343
Query: 267 DVGANVIMISQASSEHSVCF 286
           +   NVI+ISQ SSE ++  
Sbjct: 344 EEEVNVILISQGSSETNISL 363

>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
           ++ +++V G GM G  G A  IF AV + GAN+ MI+Q SSE ++ F
Sbjct: 403 DVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISF 449

>pdb|2J0X|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex With Lysine And Aspartate (T-State) Length = 449

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 14/250 (5%)
Query: 34  SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE 93
           + TD +V HGEL S  +   ++R+  +  +W D R+V+  N     + +PD +   +   
Sbjct: 109 ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTN-DRFGRAEPDIAALAELAA 167
Query: 94  KWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
                  +  ++ T GFI S      TTL R GSD++AA++   L A +V IWTDV G+Y
Sbjct: 168 LQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227
Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           + DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G 
Sbjct: 228 TTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGT 287
Query: 213 MICRPPVDENEDEQIIDSPV-KGFATIDNLALVNVEGTGMAGVPGTANAIFG--AVKDVG 269
           ++C      N+ E   + P+ +  A   N  L+ +    M    G    +FG  A  ++ 
Sbjct: 288 LVC------NKTE---NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNIS 338
Query: 270 ANVIMISQAS 279
            ++I  S+ S
Sbjct: 339 VDLITTSEVS 348

>pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase Complexed With Lysine And S-Adenosylmethionine Length = 510

Iteration: 1
 Score =  110 bits (275), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 126/254 (49%), Gaps = 14/254 (5%)
Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP---TSSNQVDPDFSESEKRLE 93
           D++V  GE  S ++ AA +   G+  +  D  E+  +     T+ + ++  +    KRL 
Sbjct: 141 DYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLY 200
Query: 94  KWFSQSPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
             +   P+  I+ TGF+         TTL R GSD +A  +G  L   ++ +W DVDGV 
Sbjct: 201 DDWMHDPAVPIV-TGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVL 259
Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           + DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +N   PG 
Sbjct: 260 TCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGT 319
Query: 213 MICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANV 272
           +I +          +  S +       N+ ++++  T M G  G    +F   +++G +V
Sbjct: 320 IITKT-------RDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISV 372
Query: 273 IMISQASSEHSVCF 286
            ++  A+SE S+  
Sbjct: 373 DVV--ATSEVSISL 384

>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate Kinase (Caak): An Important Allosteric Enzyme For Industrial Amino Acids Production Length = 446

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 22  FLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQV 81
           +L  V       + +D+    GE  +  +LA       ++ +++D  EV+  + +     
Sbjct: 95  YLEKVKKNIENGASSDYAASRGEYLNGVILAKY-----LNAEFIDAAEVIFFDKSGCFDE 149
Query: 82  DPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQ 141
              +   EK  EK  S    N  +  GF  S+ +    T  R GSD + +I+ A + A  
Sbjct: 150 KKSY---EKIKEKVLS---CNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADL 203
Query: 142 VTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
              WTDV G   ADPR V     +  +SY+E  E+SY GA VLH   I PV    IPI I
Sbjct: 204 YENWTDVSGFLXADPRIVENPKTISKISYKELRELSYXGATVLHEEAIFPVKDSGIPINI 263
Query: 202 RNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVE 247
           +N    S PG +I       +  ++I    + G A   N  ++ +E
Sbjct: 264 KNTNKPSDPGTLIL-----SDTHKEINLGTITGIAGKKNFTVIAIE 304

>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178
           TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  A  L  LS++E  E++ 
Sbjct: 147 TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAA 206
Query: 179 FGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI 238
            G+ +L  R++     +++P+ +R+ ++ + PG +I        ED  + ++ + G AT 
Sbjct: 207 VGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GSMEDIPVEEAVLTGVATD 261
Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            + A V V   G++  PG A  +F A+ D   N+ M+ Q
Sbjct: 262 KSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQ 298

>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178
           TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  A  L  LS++E  E++ 
Sbjct: 147 TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAA 206
Query: 179 FGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI 238
            G+ +L  R++     +++P+ +R+ ++ + PG +I        ED  + ++ + G AT 
Sbjct: 207 VGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GSMEDIPVEEAVLTGVATD 261
Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            + A V V   G++  PG A  +F A+ D   N+ M+ Q
Sbjct: 262 KSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQ 298

>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis Length = 600

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 91  RLEKWFSQSPSNTIIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           RLE    +     ++  GF  I+S      TTL R GSD SA  + A L+A    I+TDV
Sbjct: 120 RLEHHLREG--KVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDV 177
Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
            G+ + DPR V EA ++  ++  E  E++  GA VLHPR +     Y IP+V+R+ ++  
Sbjct: 178 PGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-D 236
Query: 209 VPGIMICRPPV 219
            PG  +  PPV
Sbjct: 237 EPGTKVVAPPV 247

>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus Fulgidus Length = 219

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 43/167 (25%)
Query: 10  ELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTRE 69
           +L+ E+I+S            A+E+F D++                   GI    ++   
Sbjct: 43  KLAREYIKSAREL-------GASETFCDYI-------------------GIAATRLNAML 76
Query: 70  VLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFS 129
           ++   P+++ +V  DF E+E+ L K +       ++  G           T     +D +
Sbjct: 77  LISAIPSAAKKVPVDFMEAEE-LSKLY-----RVVVMGG-----------TFPGHTTDAT 119
Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
           AA++   ++A      T+VDGVYSADP+  + AV    LS Q+  E+
Sbjct: 120 AALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166

>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 134 GALLRAHQVTI-----WTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT 188
           GA LRA ++        T VDGVY  DP+K S+AV   +L+Y E       G  V+    
Sbjct: 148 GAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMDTAA 204
Query: 189 IIPVMRYDIPIVIRNIFNLSVPGIMI 214
                  D+P+    IF +S PG+++
Sbjct: 205 FALARDSDLPL---RIFGMSEPGVLL 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	1e-118
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	3e-13
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	1e-108
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	1e-103
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	1e-102
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	3e-11
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	3e-39
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	4e-05
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	3e-38
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	2e-06
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	9e-06
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	2e-04
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	6e-17
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	6e-14
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	2e-11
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	3e-11
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	7e-11
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	4e-10
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	1e-09
2ij9_A	219	Uridylate kinase; structural genomics, protein str	2e-09
3nwy_A	281	Uridylate kinase; allosterically activated form, A	3e-09
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	1e-08
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	1e-08
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	8e-08
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	3e-07
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	2e-06
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	7e-06
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	2e-05
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	3e-05
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	2e-04
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	2e-04

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449

 Score =  320 bits (823), Expect = e-108
 Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 13/290 (4%)

Query: 23  LSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVD 82
           L+   +   + + TD +V HGEL S  +   ++R+  +  +W D R+V+  N       +
Sbjct: 98  LAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGR-AE 156

Query: 83  PDFSESEKRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQ 141
           PD +   +          +  + I  GFI S      TTL R GSD++AA++   L A +
Sbjct: 157 PDIAALAELAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASR 216

Query: 142 VTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
           V IWTDV G+Y+ DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ +
Sbjct: 217 VDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFV 276

Query: 202 RNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAI 261
            +  +    G ++C    +            +  A   N  L+ +    M    G    +
Sbjct: 277 GSSKDPRAGGTLVCNKTENPP--------LFRALALRRNQTLLTLHSLNMLHSRGFLAEV 328

Query: 262 FGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL-ESKFREALNA 310
           FG +     +V +I+  +SE SV   +      +  + L        L+A
Sbjct: 329 FGILARHNISVDLIT--TSEVSVALTLDTTGSTSTGDTLLTQSLLMELSA 376

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446

 Score =  309 bits (794), Expect = e-103
 Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 18/294 (6%)

Query: 21  NFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ 80
            +L  V       + +D+    GE  +  +LA       ++ +++D  EV+  + +    
Sbjct: 94  YYLEKVKKNIENGASSDYAASRGEYLNGVILAKY-----LNAEFIDAAEVIFFDKSGC-- 146

Query: 81  VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAH 140
              D  +S +++++       N  +  GF  S+ +    T  R GSD + +I+ A + A 
Sbjct: 147 --FDEKKSYEKIKEKVL--SCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNAD 202

Query: 141 QVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
               WTDV G   ADPR V     +  +SY+E  E+SY GA VLH   I PV    IPI 
Sbjct: 203 LYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPIN 262

Query: 201 IRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANA 260
           I+N    S PG +I      E          + G A   N  ++ +E   +    G    
Sbjct: 263 IKNTNKPSDPGTLILSDTHKEIN-----LGTITGIAGKKNFTVIAIEKALLNSEVGFCRK 317

Query: 261 IFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLS 314
           I   ++  G +   +   S   SV   + + ++    + +  + ++  N   + 
Sbjct: 318 ILSILEMYGVSFEHMP--SGVDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE 369

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score =  309 bits (794), Expect = e-102
 Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 12/291 (4%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
              T    D++V  GE  S ++ AA +   G+  +  D  E+  +        D   +  
Sbjct: 133 KELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATY 192

Query: 89  EKRLEKWFSQ--SPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW 145
               ++ +          I TGF+         TTL R GSD +A  +G  L   ++ +W
Sbjct: 193 PAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVW 252

Query: 146 TDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205
            DVDGV + DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +
Sbjct: 253 KDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSY 312

Query: 206 NLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV 265
           N   PG +I        +   +  S +       N+ ++++  T M G  G    +F   
Sbjct: 313 NPKAPGTIIT-------KTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIF 365

Query: 266 KDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQV 316
           +++G +V +++  +SE S+   +   ++ +     +          +++ V
Sbjct: 366 EELGISVDVVA--TSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVV 414

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVA 297
           +   A++++ G  +          F  +   G NV MISQ +S+ ++ F V E E +   
Sbjct: 417 LKGRAIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCV 475

Query: 298 EALESKFREA 307
           +AL   F E+
Sbjct: 476 QALHKSFFES 485

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score =  142 bits (360), Expect = 3e-39
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 16/218 (7%)

Query: 104 IIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE 161
            I  GF  +     ++ TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  
Sbjct: 131 CIVAGFQGVNKETRDV-TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPN 189

Query: 162 AVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE 221
           A  L  LS++E  E++  G+ +L  R++     +++P+ +R+ ++ + PG +I       
Sbjct: 190 AQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GS 244

Query: 222 NEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE 281
            ED  + ++ + G AT  + A V V   G++  PG A  +F A+ D   N+ M+ Q    
Sbjct: 245 MEDIPVEEAVLTGVATDKSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQNVFS 302

Query: 282 HS-----VCFAVPEKEVKAVAEALESKFREALNAGRLS 314
                  + F  P  + +   E L+ K +   N   + 
Sbjct: 303 VEDGTTDITFTCPRSDGRRAMEILK-KLQVQGNWTNVL 339

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
           D +  V++ G GM   PG       A++DV  N+ +IS  +SE  +   + E ++ A A 
Sbjct: 342 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAAR 399

Query: 299 ALESKF 304
           AL  +F
Sbjct: 400 ALHEQF 405

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score =  142 bits (360), Expect = 3e-38
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 9/209 (4%)

Query: 104 IIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE 161
           ++  GF  I+S      TTL R GSD SA  + A L+A    I+TDV G+ + DPR V E
Sbjct: 131 VVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPE 190

Query: 162 AVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE 221
           A ++  ++  E  E++  GA VLHPR +     Y IP+V+R+ ++   PG  +  PPV  
Sbjct: 191 AQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-DEPGTKVVAPPVQN 249

Query: 222 NEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS 280
                +  +  V G     + A V +    +   PG A+ +F  +     ++ +I Q+  
Sbjct: 250 RSLVGLEIAKAVDGVEYDADQAKVAL--LRVPDRPGVASKLFRDIAQQQVDIDLIIQSIH 307

Query: 281 EHS---VCFAVPEKEVKAVAEALESKFRE 306
           + +   + F V +  +        +    
Sbjct: 308 DGNSNDIAFTVVKDLLNTAEAVTSAIAPA 336

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 11/108 (10%)

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
                 +N+ +      V+G A   + A + +    +   PG A  +F A+ +   +V M
Sbjct: 418 VTLSPPKNQTDTSHLPAVRGVALDQDQAQIAI--RHVPDRPGMAAQLFTALAEANISVDM 475

Query: 275 ISQASSEHS--------VCFAVPEKEVKAVAEALESKFREALNAGRLS 314
           I Q+             + F V E +       L+    +      + 
Sbjct: 476 IIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQ-PLIKDWLDAAIV 522

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
             +A + + G GM G PG A  +F  + DVG N+ MIS  +SE  V   + +++      
Sbjct: 353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSEVKVSCVIDQRDADRAIA 410

Query: 299 ALESKFRE 306
           AL + F  
Sbjct: 411 ALSNAFGV 418

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
             +A V++ G+GM G PG A   F A+     N+ MI+  +SE  +   VP+       +
Sbjct: 525 KAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSEIKISCVVPQDRGVDALK 582

Query: 299 ALESKF 304
           A  S F
Sbjct: 583 AAHSAF 588

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} Length = 157

 Score = 75.7 bits (187), Expect = 6e-17
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAV 288
              +K  A  D + ++ V+ +           +F   +     V M++ +    S+    
Sbjct: 6   KDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTID- 64

Query: 289 PEKEVKAVAEALE 301
            +K +  +  AL 
Sbjct: 65  NDKNLPDIVRALS 77

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} Length = 157

 Score = 67.6 bits (166), Expect = 6e-14
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 219 VDENEDEQIIDSPVKGFATID---NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275
           +D +++   I   +     +    ++ ++ + G       G    I  A+K V   V MI
Sbjct: 63  IDNDKNLPDIVRALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARIINALKGV--PVRMI 120

Query: 276 SQASSEHSVCFAVPEKEVKAVAEALESKF 304
           S   S ++V   V  ++ K    AL +K 
Sbjct: 121 SYGGSNYNVSVLVKAEDKKKALIALSNKL 149

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D  AA++   L+A  + + T+VDGVY+ADP+K   A  ++ +  +E  E+   G  +   
Sbjct: 140 DAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIV--GKGIEKA 197

Query: 187 RTIIPV--------MRYDIPIVIRNIFNLSVPGIMI 214
            +   +         R  I  +   +        + 
Sbjct: 198 GSSSVIDPLAAKIIARSGIKTI---VIGKEDAKDLF 230

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +   AA++     +  + + T+VDGVY  DPR  ++  ++  L+ Q+  ++     +V  
Sbjct: 119 TAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQ- 177

Query: 186 PRTIIPV--------MRYDIPIVIRNIFNLSVPG 211
             T   +         R  I ++   + N     
Sbjct: 178 AGTYELLDPLAIKIVERSKIRVI---VMNYRKLN 208

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240

 Score = 60.3 bits (146), Expect = 7e-11
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +A +    + +  +   T VDG+Y  DP K  +A  L TLSY +A         V+ 
Sbjct: 144 TDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMD 200

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
              I       +PIV   + N+   G
Sbjct: 201 DTAISLAKDNKLPIV---VCNMFKKG 223

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270

 Score = 58.7 bits (142), Expect = 4e-10
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D    ++       Q+    D DG+Y+A+P+   +A  +  +S  E         ++L  
Sbjct: 170 DAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKG-LHDSILEF 228

Query: 187 R--TIIPVMRYDIPIVIRNIFNLSVPG 211
               ++   ++   +    + N  VPG
Sbjct: 229 PVLDLLQSAQHVREVQ---VVNGLVPG 252

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 102 NTIIATGFIASTPDNIPTTLKRDGS-DFSAAIMGALLRAHQVTIWTDVDGVYSADPR--K 158
             ++ + F        P +       D  A ++     A  +TI  +VDG+Y+ADP    
Sbjct: 145 RAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPD 204

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
             +A  L   S  +  +             ++   R+   +    + N  VPG
Sbjct: 205 RGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQ---VVNGLVPG 254

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM------SYF 179
           +D +AA++   ++A      T+VDGVYSADP+  + AV    LS Q+  E+         
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175

Query: 180 GANVLHPRTIIPVMRYDIPIVI 201
              V+       + R  I   +
Sbjct: 176 TNVVIDLLAAKIIERSKIKTYV 197

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA     + A  V +   VDGV++ DPR   EA +L  +S++E  +    G  V  
Sbjct: 185 TDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDR---GLRVAD 241

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                  M   +PI+   +FNL   G
Sbjct: 242 ATAFSLCMDNGMPIL---VFNLLTDG 264

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D  AAI  A   +  + +  + VDGVY +DP+    A     +++  A         V+
Sbjct: 159 TDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVM 215

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
               +      +I ++   +FN+  P 
Sbjct: 216 DATALALCQENNINLL---VFNIDKPN 239

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 27/179 (15%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRL 92
               D +     + +A  +   + K G                 S+ +++    +  +R 
Sbjct: 73  RVTGDHMGMLATVINALAMQDALEKLGAKV-----------RVMSAIKINDVCEDFIRRR 121

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
                +     I A G                  D  AA+    + A  +   T VDGVY
Sbjct: 122 AIRHLEKGRIAIFAAGTGNPFFTT----------DSGAALRAIEIGADLLLKATKVDGVY 171

Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
             DP+K S+AV   +L+Y E       G  V+           D+P+    IF +S PG
Sbjct: 172 DKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMDTAAFALARDSDLPLR---IFGMSEPG 224

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+ GA +    +   T+VDGVY+ADP+K   A    T+++ EA         V+ 
Sbjct: 143 TDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMD 199

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                      + IV   +F ++  G
Sbjct: 200 ATAFALCRERKLNIV---VFGIAKEG 222

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +A + G  + A  V   T VDGVY  DP K  +A + + LSY E  +       V+ 
Sbjct: 144 TDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMD 200

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                    + +PI    +FN+  PG
Sbjct: 201 LSAFTLARDHGMPIR---VFNMGKPG 223

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 60/206 (29%)

Query: 44  ELWSAQMLAAVVRKNGIDCK-WMDTREVLIVN--------PTSSNQVDPDFSESEKR--L 92
            + +A+   A      + CK  + TR   + +          S +      +  E +  L
Sbjct: 252 NVQNAKAWNAF----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTI--WTDVDG 150
            K+                  P ++P  +    +    +I+   +R    T   W  V+ 
Sbjct: 308 LKYLDCR--------------PQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEM-SYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
                  K++  +I  +L+  E  E    F          + V      I          
Sbjct: 353 ------DKLTT-IIESSLNVLEPAEYRKMFDR--------LSVFPPSAHI---------- 387

Query: 210 PGIMICR--PPVDENEDEQIIDSPVK 233
           P I++      V +++   +++   K
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHK 413

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D +AA+  A + A  + +  + VDGVY+ADP+K + AV    L++ E  +    G  ++
Sbjct: 143 TDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKR---GLKIM 199

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
                   M  DI +V   +FN++  G
Sbjct: 200 DATASTLSMDNDIDLV---VFNMNEAG 223

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D+ +      + +  + +    VDGV+++DP+    A + R L+Y +          V+
Sbjct: 149 TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVM 205

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
               ++    Y++P     +FN   PG
Sbjct: 206 DQAALLLARDYNLPAH---VFNFDEPG 229

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
                  L   +V + TDVDGVY+ +P+K  +A +L  +   +  E 
Sbjct: 164 INHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLES 210

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} Length = 167

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 219 VDENED-EQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            +E+++ E+     V G A   N A +NV   G+   PG A  I GAV D    V MI Q
Sbjct: 5   FEEDDNMERAA---VTGIAFDKNQARINV--RGVPDKPGVAYQILGAVADANIEVDMIIQ 59

Query: 278 ASSEHS---VCFAVPEKEVKAVAEALESKFREALNAGRLS 314
                      F VP  + K   E L  + ++++ A  + 
Sbjct: 60  NVGSEGTTDFSFTVPRGDYKQTLEILS-ERQDSIGAASID 98

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE-MSYFG 180
            A M  LL+       TDVDG+YS DP++  +AV+LR +     ++ +    
Sbjct: 151 MADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNITFDRVQNDV 202

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} Length = 181

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHS-----VCF 286
           + G A   + A V +   G+  +PG A  +F AV D   N+ M+ Q  S+       + F
Sbjct: 7   LTGVAHDRSEAKVTI--VGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITF 64

Query: 287 AVPEKEVKAVAEALESKFREALNAGRLS 314
                   A  E L+   R  +   +L 
Sbjct: 65  TCSRDVGPAAVEKLD-SLRNEIGFSQLL 91

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* Length = 178

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHS-----VCF 286
           + G AT  + A V V   G++  PG A  +F A+ D   N+ M+ Q  S        + F
Sbjct: 6   LTGVATDKSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITF 63

Query: 287 AVPEKEVKAVAEALESKFREALNAGRLS 314
             P  + +   E L+ K +   N   + 
Sbjct: 64  TCPRSDGRRAMEILK-KLQVQGNWTNVL 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	100.0
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	100.0
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	100.0
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	100.0
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	100.0
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	100.0
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	99.91
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	99.9
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	99.9
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	99.9
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	99.9
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	99.9
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	99.89
2ap9_A	299	NAG kinase, acetylglutamate kinase, AGK; structura	99.88
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	99.88
3nwy_A	281	Uridylate kinase; allosterically activated form, A	99.88
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	99.87
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	99.86
2egx_A	269	Putative acetylglutamate kinase; struc genomics, N	99.86
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	99.86
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	99.85
2ako_A	251	Glutamate 5-kinase; structural genomics, PSI, prot	99.85
3d40_A	286	FOMA protein; fosfomycin, antibiotic resistance, k	99.84
2rd5_A	298	Acetylglutamate kinase-like protein; protein-prote	99.83
2ij9_A	219	Uridylate kinase; structural genomics, protein str	99.83
1gs5_A	258	Acetylglutamate kinase; carbamate kinase, amino ac	99.82
2v5h_A	321	Acetylglutamate kinase; amino-acid biosynthesis, t	99.82
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	99.81
2bty_A	282	Acetylglutamate kinase; N-acetyl-L-glutamate kinas	99.81
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	99.79
2buf_A	300	Acetylglutamate kinase; acetyglutamate kinase, ADP	99.77
3l86_A	279	Acetylglutamate kinase; ARGB, amino-acid biosynthe	99.77
1e19_A	314	Carbamate kinase-like carbamoylphosphate synthetas	99.76
3k4o_A	266	Isopentenyl phosphate kinase; small molecule kinas	99.7
2e9y_A	316	Carbamate kinase; transferase, structural genomics	99.68
3zzh_A	307	Acetylglutamate kinase; transferase, arginine bios	99.65
3d2m_A	456	Putative acetylglutamate synthase; protein-COA-Glu	99.63
4ab7_A	464	Protein Arg5,6, mitochondrial; transferase, argini	99.6
2we5_A	310	Carbamate kinase 1; arginine catabolism, arginine	99.6
3kzf_A	317	Carbamate kinase; arginine dihydrolase pathway, gi	99.56
3s6g_A	460	N-acetylglutamate kinase / N-acetylglutamate SYNT;	99.54
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	99.51
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	99.47
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	99.44
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	99.43
3s6k_A	467	Acetylglutamate kinase; synthase, transferase; 2.8	99.42
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	99.35
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	99.35
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	99.32
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	99.25
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	99.24
4axs_A	332	Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm	99.22
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	99.21
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	99.21
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	99.2
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	99.19
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	99.14
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	99.14
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	99.08
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	98.93
2f06_A	144	Conserved hypothetical protein; structural genomic	97.99
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	97.8
2f06_A	144	Conserved hypothetical protein; structural genomic	96.54
1zhv_A	134	Hypothetical protein ATU0741; NESG, ATR8, structur	95.79
1zvp_A	133	Hypothetical protein VC0802; structural genomics,	95.27
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	92.68
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	90.66
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	90.51
1u8s_A	192	Glycine cleavage system transcriptional repressor,	88.59
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	87.93
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	86.07
2nyi_A	195	Unknown protein; protein structure initiative, PSI	85.11

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.8e-54  Score=425.36  Aligned_cols=266  Identities=31%  Similarity=0.443  Sum_probs=229.7

Q ss_pred             hHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccC
Q 020431           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (326)
Q Consensus        34 ~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~  113 (326)
                      +..|+++|+||+||+++|+.+|     ++.+++++++++++++   . .++...+.++++++++  .+.|||++||+|.+
T Consensus       107 ~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~l~--~~~v~Vv~Gf~g~~  175 (446)
T 3tvi_A          107 ASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDKS---G-CFDEKKSYEKIKEKVL--SCNKAVIPGFYGSS  175 (446)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC------CBCHHHHHHHHHHHTT--TCSSEECCCSEEEC
T ss_pred             ccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCCC---C-ceehHhhHHHHHHHHh--cCCeEEeeCceecC
Confidence            7789999999999999999996     5999999999887762   2 2456667789999997  89999999999999


Q ss_pred             CCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHH
Q 020431          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM  193 (326)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~  193 (326)
                      ++|.++|+||||||++|+++|.+++|+++++||||||||++|||++|+|++++++||+|+.+|+++|+++|||+|+++|+
T Consensus       176 ~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~  255 (446)
T 3tvi_A          176 FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVK  255 (446)
T ss_dssp             TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHH
T ss_pred             CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCEEEEeccCCCCCceEEeCCCCC----------------------CCcc---------------------------
Q 020431          194 RYDIPIVIRNIFNLSVPGIMICRPPVD----------------------ENED---------------------------  224 (326)
Q Consensus       194 ~~~I~v~I~n~~~~~~~GT~I~~~~~~----------------------~~~~---------------------------  224 (326)
                      ++|||++|+|+++|+.+||+|.+....                      ...|                           
T Consensus       256 ~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~  335 (446)
T 3tvi_A          256 DSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSG  335 (446)
T ss_dssp             HSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEE
T ss_pred             HcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecC
Confidence            999999999999999999999754210                      0000                           


Q ss_pred             -------h--hhcc-------------CCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCcc
Q 020431          225 -------E--QIID-------------SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEH  282 (326)
Q Consensus       225 -------~--~~~~-------------~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~  282 (326)
                             .  ....             -....+.+.+++++|++||.+|++.||+++++|++|+++||||.||+|++|+.
T Consensus       336 ~~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei  415 (446)
T 3tvi_A          336 VDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEI  415 (446)
T ss_dssp             TTEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTT
T ss_pred             CCEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCc
Confidence                   0  0000             01235888899999999999999999999999999999999999999999999


Q ss_pred             EEEEEEccccHHHHHHHHHHHHHHHhcC
Q 020431          283 SVCFAVPEKEVKAVAEALESKFREALNA  310 (326)
Q Consensus       283 sIs~~V~~~d~~~av~~Lh~~f~~~~~~  310 (326)
                      +|||+|+++|.++|+++||++||..--+
T Consensus       416 ~Is~vV~~~d~~~Av~aLH~~ff~~~~~  443 (446)
T 3tvi_A          416 NVIVGVETVDFEKAVKSIYNAFNEGHHH  443 (446)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHC-----
T ss_pred             eEEEEEcHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999876543

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=100.00  E-value=9.7e-54  Score=426.41  Aligned_cols=296  Identities=26%  Similarity=0.422  Sum_probs=256.6

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCC---c
Q 020431           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---F   85 (326)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~---~   85 (326)
                      +.|+..++.|++++.     ++++++.+|+++|+||++|+.+++.+|+++|++|++++++++++++++.++..+++   +
T Consensus       113 ~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~  192 (510)
T 2cdq_A          113 SVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATY  192 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHH
T ss_pred             HHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHH
Confidence            356777788877643     57889999999999999999999999999999999999999966666666654443   2


Q ss_pred             hhhHHHHHH-HhhcCCCcEEEecCccccCC-CCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCe
Q 020431           86 SESEKRLEK-WFSQSPSNTIIATGFIASTP-DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV  163 (326)
Q Consensus        86 ~~~~~~i~~-~l~~~~~~ipVv~Gfi~~~~-~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~  163 (326)
                      ...++.+.+ +++  .+.|||++||+|.++ +|.++|+||||||++|+++|.+|+|+++++||||||||++|||++|+|+
T Consensus       193 ~~~~~~l~~~Ll~--~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~  270 (510)
T 2cdq_A          193 PAVAKRLYDDWMH--DPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRAT  270 (510)
T ss_dssp             HHHHHHHHHHHHH--SCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCC
T ss_pred             HHHHHHHHHHHHh--CCcEEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCE
Confidence            223455654 556  789999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             EEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEE
Q 020431          164 ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLAL  243 (326)
Q Consensus       164 ~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~  243 (326)
                      ++++++|+|+.+|+++|+++|||+|+++|.++|||++|+|+++|+.+||+|.+... .      ....+++|+.++|+++
T Consensus       271 ~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~~~~-~------~~~~v~gIa~~~~~~~  343 (510)
T 2cdq_A          271 PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRD-M------TKSILTSIVLKRNVTM  343 (510)
T ss_dssp             BCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESCCC-C------TTCCEEEEEEEEEEEE
T ss_pred             EecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEecccc-c------cccccccccccCCeEE
Confidence            99999999999999999999999999999999999999999999999999987532 1      2346999999999999


Q ss_pred             EEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccH------HHHHHHHHHHHHHHhcCCCCcceE
Q 020431          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV------KAVAEALESKFREALNAGRLSQVC  317 (326)
Q Consensus       244 IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~------~~av~~Lh~~f~~~~~~~~~~~v~  317 (326)
                      |+|.|.+|.+.+|+.+++|+.|+++||+|+||+|  |+.+|||+|++++.      .+.++.+.++    +  ..+++++
T Consensus       344 I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~s--se~sis~~v~~~~~~~~~~~~~~l~~~~~e----l--~~~~~v~  415 (510)
T 2cdq_A          344 LDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHVVEE----L--EKIAVVN  415 (510)
T ss_dssp             EEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE--ETTEEEEEECCGGGSSSCCCHHHHHHHHHH----H--TTTSEEE
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEe--CCCeEEEEEechHhhhhhHHHHHHHHHHHH----h--CCCCeEE
Confidence            9999999999999999999999999999999984  69999999998764      3344444333    2  2267899


Q ss_pred             EEcCeeecC
Q 020431          318 LSFWLCDYT  326 (326)
Q Consensus       318 ~~~~~~~~~  326 (326)
                      ++.++|+|+
T Consensus       416 ~~~~~a~Vs  424 (510)
T 2cdq_A          416 LLKGRAIIS  424 (510)
T ss_dssp             EEEEEEEEE
T ss_pred             EeCCcEEEE
Confidence            999999874

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=100.00  E-value=1.6e-52  Score=412.69  Aligned_cols=292  Identities=28%  Similarity=0.475  Sum_probs=248.2

Q ss_pred             HHHHHHHHHHhhhc---CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHH-
Q 020431           15 FIRSTYNFLSNVDS---GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK-   90 (326)
Q Consensus        15 ~i~~~~~~l~~~~~---~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~-   90 (326)
                      .++..++.|..+..   -..+++.+|+++|+||++|+.+++.+|+++|+++++++++++ +.+++.++..+++...+.+ 
T Consensus        87 ~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~~~~~~~~~~~~~~~  165 (449)
T 2j0w_A           87 EIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAEL  165 (449)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTTSCCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCCCCCccccHhHhHHH
Confidence            35555666633221   123589999999999999999999999999999999999999 5566667766666544333 


Q ss_pred             ---HHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEee
Q 020431           91 ---RLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT  167 (326)
Q Consensus        91 ---~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~  167 (326)
                         .++.+++   +.|||++||+|.+++|.++|+||||||++|+++|.+|+|+++++||||||||++|||++|+|+++++
T Consensus       166 ~~~~l~~l~~---~~IpVv~Gf~g~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~  242 (449)
T 2j0w_A          166 AALQLLPRLN---EGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDE  242 (449)
T ss_dssp             HHHHTHHHHH---HSEEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESE
T ss_pred             HHHHHHHHhc---CCEEEEeCCeeeCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccC
Confidence               3444443   3499999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEe
Q 020431          168 LSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVE  247 (326)
Q Consensus       168 ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~Isiv  247 (326)
                      ++|+|+.+++++|+|+|||+|+++|.++|+|++|+|+++|+.+||+|.+...        ....+++|+.++|+++|++.
T Consensus       243 is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~~~GT~I~~~~~--------~~~~v~gIa~~~~~~~i~i~  314 (449)
T 2j0w_A          243 IAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTE--------NPPLFRALALRRNQTLLTLH  314 (449)
T ss_dssp             EEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCCS--------SCCSEEEEEEEEEEEEEEEC
T ss_pred             ccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCCCCeeEEecccc--------cccccccceeeCCEEEEEEE
Confidence            9999999999999999999999999999999999999999999999987531        23569999999999999999


Q ss_pred             cCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccH-----HHHHHHHHHHHHHHhcCCCCcceEEEcCe
Q 020431          248 GTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV-----KAVAEALESKFREALNAGRLSQVCLSFWL  322 (326)
Q Consensus       248 G~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~-----~~av~~Lh~~f~~~~~~~~~~~v~~~~~~  322 (326)
                      |.+|.+.+|+.+++|+.|++++|+|+||+|  |+.+|||+|++++.     .++++.+..++..      +++++++.++
T Consensus       315 ~~~m~~~~g~~~~if~~l~~~~i~vd~i~s--s~~sis~~v~~~~~~~~~~~~~~~~~~~el~~------~~~v~~~~~~  386 (449)
T 2j0w_A          315 SLNMLHSRGFLAEVFGILARHNISVDLITT--SEVSVALTLDTTGSTSTGDTLLTQSLLMELSA------LCRVEVEEGL  386 (449)
T ss_dssp             CCSCSCHHHHHHHHTTTTTTTTCCCSEEEE--ETTEEEEEECCCCCSSTTCCSSCHHHHHHHHH------HSCEEEEEEE
T ss_pred             ecCCCCccCHHHHHHHHHHHcCCCEEEEEe--CCCeEEEEEeccccchhhHHHHHHHHHHHhcc------CCeEEEeCCe
Confidence            999999999999999999999999999995  58999999998653     2234444443321      5679999999


Q ss_pred             eecC
Q 020431          323 CDYT  326 (326)
Q Consensus       323 ~~~~  326 (326)
                      |+|+
T Consensus       387 a~vs  390 (449)
T 2j0w_A          387 ALVA  390 (449)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9874

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=100.00  E-value=9.1e-49  Score=383.83  Aligned_cols=283  Identities=25%  Similarity=0.360  Sum_probs=222.5

Q ss_pred             CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCc
Q 020431           30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (326)
Q Consensus        30 ~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gf  109 (326)
                      ..+++..|.++|+||++++.+++.+|+++|+++.++++.++.+.+++.++..++... ..+.++++++  .+.|||++||
T Consensus        60 ~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~~-~~~~i~~~l~--~g~ipVv~g~  136 (421)
T 3ab4_A           60 VPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDV-TPGRVREALD--EGKICIVAGF  136 (421)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------------C-CHHHHHHHHH--TTCEEEC---
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeechh-hHHHHHHHHh--CCCEEEEeCC
Confidence            446788999999999999999999999999999999999986666655544333221 2278888888  8999999999


Q ss_pred             cccCCC-CCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhh
Q 020431          110 IASTPD-NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT  188 (326)
Q Consensus       110 i~~~~~-g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a  188 (326)
                      +|.+++ |.++|+||||||++|+.+|.+|+|+++++||||||||++|||.+|++++++++||+|+.+|++.|++++||+|
T Consensus       137 ~g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a  216 (421)
T 3ab4_A          137 QGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRS  216 (421)
T ss_dssp             ---------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHH
T ss_pred             cCcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHH
Confidence            999999 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhC
Q 020431          189 IIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDV  268 (326)
Q Consensus       189 ~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~  268 (326)
                      +++|.++|||++|+|+++| ..||+|.++....  +  .+...+++++.++|+++|++.|  +.+.+|+++++|+.|+++
T Consensus       217 ~~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~--~--~~~~~i~~i~~~~~~~~i~v~~--~~~~~g~~~~If~~La~~  289 (421)
T 3ab4_A          217 VEYARAFNVPLRVRSSYSN-DPGTLIAGSMEDI--P--VEEAVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADA  289 (421)
T ss_dssp             HHHHHHTTCCEEEEESSSC-CCCEEECSCGGGS--C--TTTCCCCEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCEEEecCcCC-CCCeEEEecCccc--c--cccCccceEEeeCCEEEEEEec--cCCcccHHHHHHHHHHHc
Confidence            9999999999999999998 6899998741100  0  1234699999999999999998  778899999999999999


Q ss_pred             CCcEEEEEecCCc-----cEEEEEEccccHHHHHHHHHHHHHHHhcCCCCcceEEEcCeeecC
Q 020431          269 GANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESKFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       269 ~I~v~~Isq~~se-----~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      ||+|+||+|++|+     .+|+|+|++++.+++.+.|++ +..++.   ++++.++.++|+++
T Consensus       290 ~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~-~~~~~~---~~~v~~~~~~a~vs  348 (421)
T 3ab4_A          290 EINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKK-LQVQGN---WTNVLYDDQVGKVS  348 (421)
T ss_dssp             TCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHH-HHTTTT---CSEEEEECCEEEEE
T ss_pred             CCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHH-HHHHcC---CceEEEeCCeEEEE
Confidence            9999999997774     799999999999999888876 544443   56899999999873

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=100.00  E-value=4.8e-49  Score=400.32  Aligned_cols=290  Identities=24%  Similarity=0.374  Sum_probs=245.5

Q ss_pred             CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCc
Q 020431           30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (326)
Q Consensus        30 ~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gf  109 (326)
                      ..+++..|+++++||++|+.+++.+|+++|+++++++++++++++++.+++.++..... +.++++++  .+.|||++||
T Consensus        60 ~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~~~~-~~i~~ll~--~g~IpVv~Gf  136 (600)
T 3l76_A           60 NPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRP-DRLEHHLR--EGKVVVVAGF  136 (600)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCEEEE-CCHHHHHT--TTCEEEEECE
T ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceeccccH-HHHHHHHh--CCCEEEEECC
Confidence            45688899999999999999999999999999999999999888776665543332111 67888887  8999999999


Q ss_pred             cccCCCC--CcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchh
Q 020431          110 IASTPDN--IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (326)
Q Consensus       110 i~~~~~g--~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~  187 (326)
                      +|.+++|  .++++||||||++|+++|.+|+|+++++||||||||++|||++|+|+++++++|+|+.+|+++|+++|||+
T Consensus       137 ~g~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~  216 (600)
T 3l76_A          137 QGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPR  216 (600)
T ss_dssp             EEC----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHH
T ss_pred             eecCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHH
Confidence            9999999  89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCC-CcchhhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHH
Q 020431          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE-NEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK  266 (326)
Q Consensus       188 a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~-~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~  266 (326)
                      |+++|.++|||++|+|+++ +.+||+|.+..... ..........+++|+.++|+++|++.  +|.+.+|+.+++|+.|+
T Consensus       217 a~~~a~~~gipv~I~n~~~-~~~GT~I~~~~~~~~~~~~~~~~~~v~gi~~~~~~~~i~i~--~~~~~~g~~~~if~~La  293 (600)
T 3l76_A          217 AVEIARNYGIPLVVRSSWS-DEPGTKVVAPPVQNRSLVGLEIAKAVDGVEYDADQAKVALL--RVPDRPGVASKLFRDIA  293 (600)
T ss_dssp             HHHHHHHHTCCEEEEETTC-CSCCEEEECCCCCSCCCCCCBSSCSCCEEEEECCCEEEEEE--EEECSTTHHHHHHHHHH
T ss_pred             HHHHHHHCCCeEEEEECCC-CCCCeEEecCCccccccccccccCcceEEEeeCCEEEEEEe--CCCCcccHHHHHHHHHH
Confidence            9999999999999999998 46899998753210 00000134679999999999999998  58899999999999999


Q ss_pred             hCCCcEEEEEecCCc---cEEEEEEccccHHHHHHHHHHHHHHHhc----CCCCcceEEEcCeeecC
Q 020431          267 DVGANVIMISQASSE---HSVCFAVPEKEVKAVAEALESKFREALN----AGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       267 ~~~I~v~~Isq~~se---~sIs~~V~~~d~~~av~~Lh~~f~~~~~----~~~~~~v~~~~~~~~~~  326 (326)
                      +++|+|+||+|+.++   .+|+|++++++..++.+.|++ +..++.    +..++++.++.++|+|+
T Consensus       294 ~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~-~~~el~~~~~~~~~~~v~~~~~~a~Vs  359 (600)
T 3l76_A          294 QQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSA-IAPALRSYPEADQEAEIIVEKGIAKIA  359 (600)
T ss_dssp             HTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHH-HGGGGSSSTTCSSSSEEEEECSEEEEE
T ss_pred             HcCCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHH-HHHHhhccccccCcceeEecCCeEEEE
Confidence            999999999997754   799999999999998888876 656663    34788999999999874

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3

Probab=99.91  E-value=7.9e-24  Score=191.79  Aligned_cols=160  Identities=19%  Similarity=0.254  Sum_probs=131.4

Q ss_pred             hhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCcccc
Q 020431           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (326)
Q Consensus        33 ~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~  112 (326)
                      ++..|.+.+.|++++++++..+|.++|+++.++++.+...+.+        ++.. .+.+ ++++  .|.|||++|+.+ 
T Consensus        71 ~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~--------~~~~-~~~~-~ll~--~g~ipVv~g~~g-  137 (239)
T 1ybd_A           71 RATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAE--------TYAR-PKAI-QYLE--EGKVVIFAAGTG-  137 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCE--------ECCH-HHHH-HHHH--TTCEEEEESTTS-
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeccccccc--------chhH-HHHH-HHHh--CCcEEEEECCcc-
Confidence            3345567778899999999999999999999999877643322        1111 1334 6777  899999997633 


Q ss_pred             CCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHH
Q 020431          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV  192 (326)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a  192 (326)
                          .    .++++|++|+.+|.+++|++++|||||||||++||+++|+|+++++++++|+.++   |.++|||+++.+|
T Consensus       138 ----~----~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a  206 (239)
T 1ybd_A          138 ----N----PFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALC  206 (239)
T ss_dssp             ----S----TTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHH
T ss_pred             ----C----CCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHH
Confidence                1    2357899999999999999999999999999999999999999999999998774   7899999999999


Q ss_pred             HhCCCCEEEEeccCCC---------CCceEEeC
Q 020431          193 MRYDIPIVIRNIFNLS---------VPGIMICR  216 (326)
Q Consensus       193 ~~~~I~v~I~n~~~~~---------~~GT~I~~  216 (326)
                      .++|+|++|.|+++|+         ..||.|.+
T Consensus       207 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~  239 (239)
T 1ybd_A          207 RERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC  239 (239)
T ss_dssp             HHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred             HHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence            9999999999997653         45888753

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*

Probab=99.90  E-value=2.1e-23  Score=190.10  Aligned_cols=182  Identities=18%  Similarity=0.213  Sum_probs=138.6

Q ss_pred             hhHHHHHHHHHHHHhhhc---------C--C-----------CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEccc
Q 020431           11 LSYEFIRSTYNFLSNVDS---------G--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~--~-----------~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~   68 (326)
                      ++.+.++...+++..+..         +  .           .+++..|.+.+.|++++++++..+|.++|+++.++++.
T Consensus        28 ~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~  107 (247)
T 2a1f_A           28 IDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF  107 (247)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccc
Confidence            456777777777665432         1  1           34445667778899999999999999999999999988


Q ss_pred             ceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeecc
Q 020431           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (326)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV  148 (326)
                      +...+++ .       +  ....+.++++  .+.|||++|+.     |.    .++++|++|+.+|.+++|++++|||||
T Consensus       108 ~~~~~~~-~-------~--~~~~~~~ll~--~g~ipVi~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~liilTDV  166 (247)
T 2a1f_A          108 QLNGICD-T-------Y--NWSEAIKMLR--EKRVVIFSAGT-----GN----PFFTTDSTACLRGIEIEADVVLKATKV  166 (247)
T ss_dssp             CCTTTSE-E-------C--CHHHHHHHHH--TTCEEEEESTT-----SC----SSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             ccccccc-h-------h--hHHHHHHHHh--CCCEEEEeCCc-----CC----CCCCcHHHHHHHHHhCCCCEEEEEeCC
Confidence            7643321 1       1  2234577887  89999999842     22    235789999999999999999999999


Q ss_pred             CcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCC---------CCCceEEeC
Q 020431          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (326)
Q Consensus       149 ~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~---------~~~GT~I~~  216 (326)
                      ||||++||+++|+++++++++++|+.++   |.++|+|+++.+|.++|++++|.|+.+|         +..||+|..
T Consensus       167 dGvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~  240 (247)
T 2a1f_A          167 DGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE  240 (247)
T ss_dssp             SSCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECC
T ss_pred             CcccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEee
Confidence            9999999999999999999999999874   7899999999999999999999998754         346888853

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A

Probab=99.90  E-value=9.6e-23  Score=185.47  Aligned_cols=182  Identities=20%  Similarity=0.201  Sum_probs=144.1

Q ss_pred             hhHHHHHHHHHHHHhhhc---------C--C-----------CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEccc
Q 020431           11 LSYEFIRSTYNFLSNVDS---------G--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~--~-----------~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~   68 (326)
                      ++.++++....++..+..         +  .           .+....|++-....++++.++..+|.+.|++++.+++.
T Consensus        29 ~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~~g~~~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~  108 (243)
T 3ek6_A           29 IDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAI  108 (243)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTTSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechh
Confidence            667888888888876643         1  1           12223343323344677888999999999999999998


Q ss_pred             ceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeecc
Q 020431           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (326)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV  148 (326)
                      ++..+++      .++.    +.+.++++  .|.|||++|+.     |..    ++++|++|+++|.+++|+++++||||
T Consensus       109 ~~~~v~~------~~~~----~~~~~lL~--~g~IpVv~~~~-----g~~----~~~~D~~Aa~lA~~l~Ad~li~lTdV  167 (243)
T 3ek6_A          109 KINDVCE------DFIR----RRAIRHLE--KGRIAIFAAGT-----GNP----FFTTDSGAALRAIEIGADLLLKATKV  167 (243)
T ss_dssp             CBTTTBE------ECCH----HHHHHHHH--TTCEEEEESTT-----SST----TCCHHHHHHHHHHHHTCSEEEEECSS
T ss_pred             hcCcccC------cCCH----HHHHHHHH--CCcEEEEECCC-----CCC----cCChHHHHHHHHHHcCCCEEEEEeCC
Confidence            8654322      1233    67888998  89999999842     221    25689999999999999999999999


Q ss_pred             CcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCC---------CCCceEEeC
Q 020431          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (326)
Q Consensus       149 ~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~---------~~~GT~I~~  216 (326)
                      ||||++||+++|+|+++++++++|+.+   .|.++|+++|+..|.++|+|++|.|+++|         +..||.|.+
T Consensus       168 dGvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~  241 (243)
T 3ek6_A          168 DGVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG  241 (243)
T ss_dssp             SSCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred             CccCCCCCCCCCCceecccccHHHHHh---CCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence            999999999999999999999999876   37889999999999999999999998754         346999876

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}

Probab=99.90  E-value=8.4e-23  Score=187.08  Aligned_cols=151  Identities=18%  Similarity=0.285  Sum_probs=126.0

Q ss_pred             chHHHHHHHHHHHHH-cCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccc
Q 020431           43 GELWSAQMLAAVVRK-NGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL  121 (326)
Q Consensus        43 GE~~s~~~~~~~L~~-~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~l  121 (326)
                      +..+++.+++..|.+ +|+++.++++.++..+++      ..+.    ..+.++++  .|.|||++|  + ++++.++  
T Consensus        86 ~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~------~~~~----~~~~~lL~--~g~IpVi~g--g-~g~~~vt--  148 (255)
T 2jjx_A           86 GTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAE------PYIR----LRAVHHLD--NGYIVIFGG--G-NGQPFVT--  148 (255)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEESSCCCSSSE------ECCH----HHHHHHHH--TTCEEEEES--T-TSCSSCC--
T ss_pred             HHHHHHHHHHHHHHhhcCCceEEecHHHcCcccC------cccH----HHHHHHHh--CCcEEEEeC--C-CCCCccc--
Confidence            346888888999999 999999999988764332      1122    33447887  899999998  3 3333332  


Q ss_pred             cCCcchHHHHHHHHhhccceEEEee-ccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEE
Q 020431          122 KRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV  200 (326)
Q Consensus       122 grggsD~~A~~lA~~l~a~~~~~~t-DV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~  200 (326)
                          +|++|+.+|.+|+|+++++|| ||||||++||+++|+++++++++++|+.++   |.++|+|.|++++.++|++++
T Consensus       149 ----tD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v~  221 (255)
T 2jjx_A          149 ----TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPAH  221 (255)
T ss_dssp             ----SHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCEE
T ss_pred             ----hHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeEE
Confidence                499999999999999999999 999999999999999999999999988764   889999999999999999999


Q ss_pred             EEeccCCC---------CCceEEeCC
Q 020431          201 IRNIFNLS---------VPGIMICRP  217 (326)
Q Consensus       201 I~n~~~~~---------~~GT~I~~~  217 (326)
                      |.|+++|+         ..||.|.++
T Consensus       222 I~~~~~~~~l~~~l~g~~~GT~I~~~  247 (255)
T 2jjx_A          222 VFNFDEPGVMRRICLGEHVGTLINDD  247 (255)
T ss_dssp             EEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred             EEeCCCchHHHHHhcCCCCceEEecC
Confidence            99998763         579999874

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*

Probab=99.90  E-value=1.1e-22  Score=184.74  Aligned_cols=180  Identities=18%  Similarity=0.238  Sum_probs=140.9

Q ss_pred             hhHHHHHHHHHHHHhhhc---------C--C------------CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcc
Q 020431           11 LSYEFIRSTYNFLSNVDS---------G--H------------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDT   67 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~--~------------~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~   67 (326)
                      ++.++++...+++..+..         +  .            ......|.+-....++++.+++..|+++|++++.+++
T Consensus        27 ~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~~~G~~~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~  106 (240)
T 4a7w_A           27 IDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSA  106 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecH
Confidence            577788888787776543         1  0            1111122222234678889999999999999999999


Q ss_pred             cceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeec
Q 020431           68 REVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD  147 (326)
Q Consensus        68 ~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tD  147 (326)
                      .++.....      ..+.    +.+.++++  .+.|||++|+.+     ..    .+.+|++|+++|.+++|+++++|||
T Consensus       107 ~d~~~~~~------~~~~----~~i~~lL~--~g~ipVi~~~~g-----~~----~~~~D~~Aa~lA~~l~Ad~li~lTd  165 (240)
T 4a7w_A          107 IEIKEICE------SYIY----RKAIRHLE--KGRVVIFGAGTG-----NP----FFTTDTAATLRAIEIGSDLIIKATK  165 (240)
T ss_dssp             SCCTTTSE------ECCH----HHHHHHHH--TTCEEEEESTTS-----CT----TSCHHHHHHHHHHHTTCSEEEEEES
T ss_pred             HHcCcccC------cCcH----HHHHHHHH--CCCEEEEeCCCC-----CC----CCChHHHHHHHHHHcCCCEEEEccC
Confidence            88753221      1233    67788888  899999998532     21    1347999999999999999999999


Q ss_pred             cCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCC----------CCceEE
Q 020431          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS----------VPGIMI  214 (326)
Q Consensus       148 V~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~----------~~GT~I  214 (326)
                      |||||++||+++|+|+++++++++|+.+.   |.++|+++|+.+|.++|+|++|.|+++|+          ..||.|
T Consensus       166 VdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i  239 (240)
T 4a7w_A          166 VDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV  239 (240)
T ss_dssp             SSSEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred             CCceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence            99999999999999999999999998764   88999999999999999999999997653          357876

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*

Probab=99.90  E-value=4.8e-23  Score=185.29  Aligned_cols=150  Identities=19%  Similarity=0.246  Sum_probs=125.4

Q ss_pred             ChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccc
Q 020431           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (326)
Q Consensus        32 ~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~  111 (326)
                      ++...|.+.+.|+.+++.++...|+++|+++            +      .++.    ++++++++  .+.|||++|  +
T Consensus        60 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------------~------~~~~----~~i~~ll~--~g~ipVi~g--g  113 (226)
T 2j4j_A           60 GEAYLDLLGIWASRLNAYLVMFSLQDLAYMH------------V------PQSL----EEFIQDWS--HGKVVVTGG--F  113 (226)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC------------C------CSSH----HHHHHHHT--TSSBEEECC--C
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHhCCCC------------C------cCCH----HHHHHHHH--CCCEEEEcC--C
Confidence            3466788889999999999999999999954            1      1344    77888888  899999998  2


Q ss_pred             cCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhc-CCc------cc
Q 020431          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GAN------VL  184 (326)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~-g~~------v~  184 (326)
                       +.        .+++|++|+.+|.+|+|+++++||||||||++||+++|+++++++++++|+.+++.. |.+      ++
T Consensus       114 -~~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~  184 (226)
T 2j4j_A          114 -QP--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELL  184 (226)
T ss_dssp             -ST--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCS
T ss_pred             -CC--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccc
Confidence             11        356899999999999999999999999999999999999999999999999999643 554      78


Q ss_pred             chhhHHHHHhCCCCEEEEeccCCC---------CCceEEeC
Q 020431          185 HPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMICR  216 (326)
Q Consensus       185 ~~~a~~~a~~~~I~v~I~n~~~~~---------~~GT~I~~  216 (326)
                      |++++.+|.++|+|++|.|+++|+         ..||.|.+
T Consensus       185 k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~  225 (226)
T 2j4j_A          185 DPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP  225 (226)
T ss_dssp             CHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred             hHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence            999999999999999999986543         46898865

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3

Probab=99.89  E-value=2.6e-22  Score=183.52  Aligned_cols=184  Identities=20%  Similarity=0.263  Sum_probs=144.9

Q ss_pred             hhHHHHHHHHHHHHhhhc---------C--C-----------CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEccc
Q 020431           11 LSYEFIRSTYNFLSNVDS---------G--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~--~-----------~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~   68 (326)
                      ++.+.++...++|..+..         +  .           .+++..|.+-+.+++++++++...|.+.|+++..+.+.
T Consensus        27 ~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~~~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~  106 (252)
T 1z9d_A           27 IDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAI  106 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecc
Confidence            456677777777766532         1  1           22333445566778889998999999999999999987


Q ss_pred             ceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEee-c
Q 020431           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT-D  147 (326)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~t-D  147 (326)
                      +...+.+ .       +  ....+.++++  .|.|||++|+.     |.    .++++|++|+.+|.+++|++++||| |
T Consensus       107 ~~~~~~~-~-------~--~~~~~~~lL~--~g~IpVi~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~LiilT~D  165 (252)
T 1z9d_A          107 PMQNVAE-P-------Y--IRGRALRHLE--KNRIVVFGAGI-----GS----PYFSTDTTAALRAAEIEADAILMAKNG  165 (252)
T ss_dssp             CBTTTBE-E-------C--CHHHHHHHHH--TTCEEEEESTT-----SC----TTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             ccccccC-c-------c--hHHHHHHHHh--CCCEEEEeCCc-----CC----CCCChHHHHHHHHHhcCCCEEEEecCC
Confidence            6643322 1       1  1234477887  89999999832     22    2467999999999999999999999 9


Q ss_pred             cCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCC---------CCceEEeCCC
Q 020431          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP  218 (326)
Q Consensus       148 V~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~---------~~GT~I~~~~  218 (326)
                      |||||++||+++|+++++++++++|+.+   .|.++|+++++..|.++|++++|.|+.+|+         ..||.|.++.
T Consensus       166 VdGvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  242 (252)
T 1z9d_A          166 VDGVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV  242 (252)
T ss_dssp             CCSCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred             CCeeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence            9999999999999999999999999876   478899999999999999999999997664         5799998753

>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2

Probab=99.88  E-value=2.8e-22  Score=187.71  Aligned_cols=174  Identities=14%  Similarity=0.201  Sum_probs=138.9

Q ss_pred             hhHHhH--hhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCC-C---CCCc-------hhhHHHHHHHhhcC
Q 020431           33 ESFTDF--VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-V---DPDF-------SESEKRLEKWFSQS   99 (326)
Q Consensus        33 ~~~~d~--i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-~---~~~~-------~~~~~~i~~~l~~~   99 (326)
                      +...+.  .++.|+.  ...++..|+++|++++++++.+..++++..++. .   .+|+       ....+.++++++  
T Consensus        92 ~~~l~~~~~~~~G~l--~~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~--  167 (299)
T 2ap9_A           92 PEVLDVARMVLFGQV--GRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVA--  167 (299)
T ss_dssp             HHHHHHHHHHHHHTH--HHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhhHH--HHHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHh--
Confidence            344444  4457885  334799999999999999998864444322110 0   0110       012378899998  


Q ss_pred             CCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhc
Q 020431          100 PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF  179 (326)
Q Consensus       100 ~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~  179 (326)
                      .|.|||++|+ +.++.|+.+++   ++|++|+.+|.+|+|++++|||||||||++||+   +++++++++++|+.+++.+
T Consensus       168 ~g~IpVv~~v-~~~~~G~~~~l---~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~  240 (299)
T 2ap9_A          168 AGRIPVVSTL-APDADGVVHNI---NADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPT  240 (299)
T ss_dssp             TTCEEEEESE-EECTTCCEEEE---CHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC---TTCEESEEEHHHHHHHGGG
T ss_pred             CCCeEEECCe-eECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHh
Confidence            8999999998 88899998887   489999999999999999999999999999998   5799999999999999988


Q ss_pred             CCcccchh--hHHHHHhCCCC-EEEEeccCCC----------CCceEEeCC
Q 020431          180 GANVLHPR--TIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP  217 (326)
Q Consensus       180 g~~v~~~~--a~~~a~~~~I~-v~I~n~~~~~----------~~GT~I~~~  217 (326)
                      ++++|+|+  ++..+.++|++ ++|.|+.+|+          ..||.|.++
T Consensus       241 ~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~  291 (299)
T 2ap9_A          241 LELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG  291 (299)
T ss_dssp             SCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred             hcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence            99999996  88899999999 9999987553          458999764

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A

Probab=99.88  E-value=8.9e-23  Score=195.94  Aligned_cols=193  Identities=16%  Similarity=0.208  Sum_probs=118.5

Q ss_pred             hhHHHHHHHHHHHHhhhc---------C---------------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEc
Q 020431           11 LSYEFIRSTYNFLSNVDS---------G---------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD   66 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~---------------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~   66 (326)
                      ++.+.++...+++..+..         +               +.+-...+.+.+.|+..+++.+...|.++|+++..  
T Consensus        23 ~~~~~l~~la~~Ia~l~~~G~~vVlV~gGgi~~g~~~lg~~~~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~q--  100 (367)
T 2j5v_A           23 LNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQ--  100 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEE--
T ss_pred             cCHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEE--
Confidence            556777777777766532         1               11224566677899999999999999999998863  


Q ss_pred             ccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCccc--ccCCcchHHHHHHHHhhccceEEE
Q 020431           67 TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LKRDGSDFSAAIMGALLRAHQVTI  144 (326)
Q Consensus        67 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~--lgrggsD~~A~~lA~~l~a~~~~~  144 (326)
                         +.+..++ +.. ...+...++.++++++  .|.|||+.+      ++.+.+  +.+|++|++|+.+|.+++|+.+++
T Consensus       101 ---vllt~~d-~~~-~~r~~n~~~~i~~LL~--~g~IPIv~e------nd~v~~~el~~gd~D~lAa~vA~~l~Ad~Lii  167 (367)
T 2j5v_A          101 ---MLLTRAD-MED-RERFLNARDTLRALLD--NNVVPVINE------NDAVATAEIKVGDNDNLSALAAILAGADKLLL  167 (367)
T ss_dssp             ---EEECGGG-GSS-HHHHHHHHHHHHHHHH--TTCEEEEEE------CTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEE
T ss_pred             ---EEEeccc-ccC-ceEEEhHHHHHHHHHH--CCCEEEECC------CCceecccccCCCHHHHHHHHHHhcCCCEEEE
Confidence               3332222 211 1223344578888888  899999963      233333  668999999999999999999999


Q ss_pred             eeccCcccccCCCCCCCCeEEeeecH--HHHHHHhh-----cCCcccch--hhHHHHHhCCCCEEEEeccCCC-------
Q 020431          145 WTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHP--RTIIPVMRYDIPIVIRNIFNLS-------  208 (326)
Q Consensus       145 ~tDV~Gv~~~dP~~~~~a~~i~~ls~--~e~~~l~~-----~g~~v~~~--~a~~~a~~~~I~v~I~n~~~~~-------  208 (326)
                      ||||||||++||+++|++++++++++  +|+.+++.     +|+++|+|  .|+..|.++|++++|.|+++|+       
T Consensus       168 lTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~  247 (367)
T 2j5v_A          168 LTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVME  247 (367)
T ss_dssp             EECC------------------------------------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHH
T ss_pred             eecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhc
Confidence            99999999999999999999999999  89998875     47889999  5899999999999999998765       


Q ss_pred             --CCceEEeCCC
Q 020431          209 --VPGIMICRPP  218 (326)
Q Consensus       209 --~~GT~I~~~~  218 (326)
                        ..||+|.+..
T Consensus       248 g~~~GT~i~~~~  259 (367)
T 2j5v_A          248 GISVGTLFHAQA  259 (367)
T ss_dssp             TCCCSEEECCCS
T ss_pred             CCCCcEEEEcCc
Confidence              6799998753

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}

Probab=99.88  E-value=1.7e-21  Score=180.40  Aligned_cols=181  Identities=19%  Similarity=0.247  Sum_probs=139.0

Q ss_pred             hhHHHHHHHHHHHHhhhc---------C-------------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEccc
Q 020431           11 LSYEFIRSTYNFLSNVDS---------G-------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~-------------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~   68 (326)
                      |+.++++...+++.++..         +             ..+....|.+-..++++++.++...|.++|++++.+.+.
T Consensus        69 ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~~gl~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~  148 (281)
T 3nwy_A           69 LDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAI  148 (281)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence            678888888888877654         1             122334555666788999999999999999999988877


Q ss_pred             ceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeecc
Q 020431           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (326)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV  148 (326)
                      +...+.+ .|    .+    .+.+ ++|+  .|.|||+.|+.     |.    .++++|++|+++|..++|+.+++||||
T Consensus       149 ~~~~~~~-~~----~~----~~~l-~lL~--~g~IpVv~g~~-----g~----~~~~~D~~Aa~lA~~l~Ad~LiilTDV  207 (281)
T 3nwy_A          149 TMGQVAE-PY----LP----LRAV-RHLE--KGRVVIFGAGM-----GL----PYFSTDTTAAQRALEIGADVVLMAKAV  207 (281)
T ss_dssp             CCGGGSE-EC----CH----HHHH-HHHH--TTCEEEEESTT-----SS----TTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             ccccccc-cc----ch----HHHH-HHHH--cCCeEEEECCC-----CC----CCCCHHHHHHHHHHHcCCCEEEEeecc
Confidence            6654442 11    11    1344 6887  89999999842     22    135789999999999999999999999


Q ss_pred             CcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCC---------CCceEEe
Q 020431          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMIC  215 (326)
Q Consensus       149 ~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~---------~~GT~I~  215 (326)
                      ||||++||+++|+|++++++++.|+.+   .|.++++++|+..|.++|+|++|.|+.+|+         ..||+|.
T Consensus       208 dGVy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~  280 (281)
T 3nwy_A          208 DGVFAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT  280 (281)
T ss_dssp             SSCBCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred             CccccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence            999999999999999999999998754   478899999999999999999999997643         4688874

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.87  E-value=3.7e-22  Score=184.19  Aligned_cols=155  Identities=16%  Similarity=0.169  Sum_probs=120.7

Q ss_pred             HHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCC--CCcccccCCcch
Q 020431           50 MLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD--NIPTTLKRDGSD  127 (326)
Q Consensus        50 ~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~--g~~~~lgrggsD  127 (326)
                      .+++.|+++|++++.+++.+..+++.++.  ..++.    +.++++++  .+.|||++||++.+.+  |++.++   ++|
T Consensus        93 ~l~~~L~~~G~~a~~l~g~~~~~~~~g~v--~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~~~g~~~~~---~~D  161 (269)
T 3ll9_A           93 HVCDALLAEGIPAVSMQPSAFIRAHAGRI--SHADI----SLIRSYLE--EGMVPVVYGDVVLDSDRRLKFSVI---SGD  161 (269)
T ss_dssp             HHHHHHHHTTCCEEECCGGGTEEEETTEE--EEECC----HHHHHHHH--TTCEEEEECEEEEBSCTTTSEEEE---CHH
T ss_pred             HHHHHHHHCCCcEEEEcchHcCeEecCee--eeecH----HHHHHHHH--CCCEEEECCCEEecccccCcceec---chH
Confidence            57999999999999999999877654221  23455    88999998  8999999999998888  888876   489


Q ss_pred             HHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhh-----cCCcccchh--hHHHHHhCCCCEE
Q 020431          128 FSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGANVLHPR--TIIPVMRYDIPIV  200 (326)
Q Consensus       128 ~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~-----~g~~v~~~~--a~~~a~~~~I~v~  200 (326)
                      ++|+.+|.+|+|+++++||||||||++||+++|++++++++++.|+.++..     .+..+|.|+  ++..+.++|++++
T Consensus       162 ~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~v~  241 (269)
T 3ll9_A          162 QLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVESE  241 (269)
T ss_dssp             HHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCeEE
Confidence            999999999999999999999999999999999999999999999977643     345788885  6777778999999


Q ss_pred             EEeccCC---------CCC-ceEEe
Q 020431          201 IRNIFNL---------SVP-GIMIC  215 (326)
Q Consensus       201 I~n~~~~---------~~~-GT~I~  215 (326)
                      |.|+..|         +.. ||.|.
T Consensus       242 I~~g~~~~~l~~~~~g~~~~GT~i~  266 (269)
T 3ll9_A          242 IINAAVPGNIERALLGEEVRGTRIT  266 (269)
T ss_dssp             EEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred             EEeCCCchHHHHHHCCCCCCcEEEE
Confidence            9998654         345 88875

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=99.86  E-value=1.1e-21  Score=181.73  Aligned_cols=161  Identities=17%  Similarity=0.206  Sum_probs=125.0

Q ss_pred             hhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCcccc
Q 020431           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (326)
Q Consensus        33 ~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~  112 (326)
                      +...+.+...++.++..+++..+...|++++.                    +....+.++++++  .|.|||++||++.
T Consensus        98 ~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~--------------------~~~~~~~i~~lL~--~g~IpVi~~~~~~  155 (276)
T 2ogx_A           98 VGSLAPLAASEAGQNGHILAAMLASEGVSYVE--------------------HPTVADQLAIHLS--ATRAVVGSAFPPY  155 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCC--------------------HHHHHHHHHHHHH--HSSEEEEESSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--------------------ccChHHHHHHHHh--CCCEEEEcCCccc
Confidence            33445555556666766666666566664321                    1123377888998  8999999998776


Q ss_pred             CCCCCc-ccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCC--CCCCCeEEeeecHHHHHHHhhcCCcccchhhH
Q 020431          113 TPDNIP-TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR--KVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (326)
Q Consensus       113 ~~~g~~-~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~--~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~  189 (326)
                      +.++.+ ..+.++++|++|+.+|.+|+|+++++||||||||++||+  .+|+++++++++++|+.+++  |.++|+|++.
T Consensus       156 ~~~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K~~  233 (276)
T 2ogx_A          156 HHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE--GPLPVDRALL  233 (276)
T ss_dssp             GGGCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC--SCCSSCHHHH
T ss_pred             ccccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh--CcCChHHHHH
Confidence            622211 122346799999999999999999999999999999999  89999999999999998887  8899999998


Q ss_pred             HHHH--hCCCCEEEEeccCC---------CCCceEEeCC
Q 020431          190 IPVM--RYDIPIVIRNIFNL---------SVPGIMICRP  217 (326)
Q Consensus       190 ~~a~--~~~I~v~I~n~~~~---------~~~GT~I~~~  217 (326)
                      ..+.  +.+++++|.|+.+|         +..||.|.++
T Consensus       234 ~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  272 (276)
T 2ogx_A          234 DVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG  272 (276)
T ss_dssp             HHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred             HHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence            8888  56889999999866         4679999763

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*

Probab=99.86  E-value=3.5e-21  Score=175.25  Aligned_cols=150  Identities=25%  Similarity=0.293  Sum_probs=123.7

Q ss_pred             ChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccc
Q 020431           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (326)
Q Consensus        32 ~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~  111 (326)
                      ++...+.+.+.|+.+++.++...|.++|+++            .      .++.    +.+.++++  .+.|||++|   
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------------~------~~~~----~~i~~lL~--~g~IpVi~g---  132 (244)
T 2brx_A           80 SETFKDFIGIQITRANAMLLIAALREKAYPV------------V------VEDF----WEAWKAVQ--LKKIPVMGG---  132 (244)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------------C------BCSH----HHHHHHHH--TTCBCEECC---
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHcCCCC------------C------cCCH----HHHHHHHh--CCCEEEEcC---
Confidence            4456677788899999999999999999754            0      1233    67788888  899999998   


Q ss_pred             cCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhc-CC-----cccc
Q 020431          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLH  185 (326)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~-g~-----~v~~  185 (326)
                          |..    .+++|++|+.+|.+++|++++|||||||||++||+++|+++++++++++|+.+++.. |.     .+++
T Consensus       133 ----g~~----~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~  204 (244)
T 2brx_A          133 ----THP----GHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVID  204 (244)
T ss_dssp             ----CST----TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSC
T ss_pred             ----CCC----CCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchH
Confidence                222    245799999999999999999999999999999999999999999999999998543 43     7889


Q ss_pred             hhhHHHHHhCCCCEEEEeccCC---------CCCceEEeC
Q 020431          186 PRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (326)
Q Consensus       186 ~~a~~~a~~~~I~v~I~n~~~~---------~~~GT~I~~  216 (326)
                      +.|++.+.+.+++++|.|+.+|         +..||.|.+
T Consensus       205 ~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~  244 (244)
T 2brx_A          205 PLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  244 (244)
T ss_dssp             HHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             HHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence            9999999999999999987543         346898853

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}

Probab=99.85  E-value=1.1e-20  Score=173.01  Aligned_cols=181  Identities=14%  Similarity=0.168  Sum_probs=128.9

Q ss_pred             hhHHHHHHHHHHHHhhh--------cC---C----------CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccc
Q 020431           11 LSYEFIRSTYNFLSNVD--------SG---H----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTRE   69 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~--------~~---~----------~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~   69 (326)
                      ++.+.++...++|..+.        ++   .          .++...+..-+.+..++++++...|.++|+++..+.+.+
T Consensus        44 ~~~~~i~~~a~~i~~l~~g~~vVlVhGgG~~~~~~~~~~~g~~~~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t  123 (256)
T 2va1_A           44 IDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIK  123 (256)
T ss_dssp             SCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEEECCcHHhccchHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeee
Confidence            45677777777777642        21   1          111122333344457778888999999999999988654


Q ss_pred             eeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeec-c
Q 020431           70 VLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-V  148 (326)
Q Consensus        70 ~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tD-V  148 (326)
                      ...+.     +.     ..+..+.++++  .|.|||++|.     .|    +.++++|++|+.+|..++|+++++||| |
T Consensus       124 ~~~~~-----~~-----~~~~~~~~lL~--~g~IpVi~~~-----~g----~~~~~~D~~Aa~lA~~l~Ad~LiilTD~V  182 (256)
T 2va1_A          124 CDKLV-----HE-----SSANNIKKAIE--KEQVMIFVAG-----TG----FPYFTTDSCAAIRAAETESSIILMGKNGV  182 (256)
T ss_dssp             CTTTC-----EE-----CCHHHHHHHHH--TTCEEEEEST-----TS----SSSCCHHHHHHHHHHHHTCSEEEEEESSC
T ss_pred             ccccc-----ch-----hhHHHHHHHHh--CCcEEEEECC-----CC----CCCCChhHHHHHHHHhCCCCEEEEeeccc
Confidence            32111     11     12233467888  8999999882     23    234678999999999999999999999 9


Q ss_pred             CcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCC---------CCceEEe
Q 020431          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMIC  215 (326)
Q Consensus       149 ~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~---------~~GT~I~  215 (326)
                      ||||++||+++|+++++++++++|+.++   +.++|+++|+..|.++|++++|.|+.+|+         ..||.|.
T Consensus       183 dGVy~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~  255 (256)
T 2va1_A          183 DGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS  255 (256)
T ss_dssp             CSBCSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred             CeEEcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence            9999999999999999999999999887   46788999999999999999999987543         4588874

>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3

Probab=99.85  E-value=1.5e-21  Score=178.18  Aligned_cols=161  Identities=12%  Similarity=0.123  Sum_probs=121.4

Q ss_pred             hHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccC
Q 020431           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (326)
Q Consensus        34 ~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~  113 (326)
                      ...+.+.+.|+....+.+...|.++|+++..+.      .+.+.+.. ...+....+.++.+++  .|.|||++|+-+..
T Consensus        63 ~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i~------~~~~~~~~-~~~~~~~~~~i~~ll~--~g~ipVi~~~d~v~  133 (251)
T 2ako_A           63 INKQVLAAIGQPFLISVYNELLAKFNKLGGQIL------LTGKDFDS-RKATKHAKNAIDMMIN--LGILPIINENDATA  133 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEE------ECTGGGGC-HHHHHHHHHHHHHHHH--TTCEEEEEECTTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEE------eccchhcC-cceEehHHHHHHHHHH--CCCEEEEeCCCcee
Confidence            345678888999999999999999999987432      22211210 0112223367888888  89999998651111


Q ss_pred             CCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHH--HHHHHhh-----cCCcccch
Q 020431          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMSY-----FGANVLHP  186 (326)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~--e~~~l~~-----~g~~v~~~  186 (326)
                      . ++.   .++++|++|+.+|.+|+|++++|||||||||++||+++|++++++++++.  |+.+++.     +|+++|.|
T Consensus       134 ~-~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~  209 (251)
T 2ako_A          134 I-EEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVT  209 (251)
T ss_dssp             C-HHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHH
T ss_pred             e-cce---eecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHH
Confidence            1 111   35789999999999999999999999999999999999999999999998  9988865     56787776


Q ss_pred             --hhHHHHHhCCCCEEEEeccCC
Q 020431          187 --RTIIPVMRYDIPIVIRNIFNL  207 (326)
Q Consensus       187 --~a~~~a~~~~I~v~I~n~~~~  207 (326)
                        +|+..|.++|++++|.|+.+|
T Consensus       210 k~~aa~~a~~~gv~v~I~~g~~~  232 (251)
T 2ako_A          210 KLKAAKFLLEHNKKMFLASGFDL  232 (251)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSSC
T ss_pred             HHHHHHHHHHCCCeEEEEeCCCh
Confidence              589999999999999997654

>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*

Probab=99.84  E-value=2.9e-21  Score=179.69  Aligned_cols=156  Identities=13%  Similarity=0.035  Sum_probs=123.5

Q ss_pred             HhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCC
Q 020431           38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (326)
Q Consensus        38 ~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~  117 (326)
                      ...+.|+......+...|.++|+++..+.+.+..+..+   |...++.    +.++++++  .|.|||++||++.+++|+
T Consensus        93 ~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~d---g~~~~~~----~~i~~lL~--~g~IpVi~gd~~~~~~g~  163 (286)
T 3d40_A           93 AGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRN---GIPQLRS----EVLRDVLD--HGALPVLAGDALFDEHGK  163 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEET---TEEEECC----SHHHHHHH--TTCEEEEECEEEEBTTSC
T ss_pred             hcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccC---CeEEehH----HHHHHHHH--CcCEEEEcCCeEEcCCCC
Confidence            34566666667899999999999999998877654222   1112334    67888998  899999999989888887


Q ss_pred             cccccCCcchHHHHHHHHh-hccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhh--------cCCcccch--
Q 020431          118 PTTLKRDGSDFSAAIMGAL-LRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--------FGANVLHP--  186 (326)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~-l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~--------~g~~v~~~--  186 (326)
                      +   .++++|++|+.+|.+ |+|++++|+|||||||++||+   ++++++++++.|+.++..        ++.++|+|  
T Consensus       164 ~---~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl  237 (286)
T 3d40_A          164 L---WAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKL  237 (286)
T ss_dssp             E---EEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHH
T ss_pred             E---EeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHH
Confidence            5   346799999999999 999999999999999999999   899999999987766632        35689999  


Q ss_pred             hhHHHHHhCCCCEEEEeccCCC
Q 020431          187 RTIIPVMRYDIPIVIRNIFNLS  208 (326)
Q Consensus       187 ~a~~~a~~~~I~v~I~n~~~~~  208 (326)
                      +|+..+.++|++++|.|+.+|+
T Consensus       238 ~Aa~~a~~~gv~v~I~~g~~p~  259 (286)
T 3d40_A          238 DALVTCARRGAECFIMRGDPGS  259 (286)
T ss_dssp             HHHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHCCCcEEEEeCCCCC
Confidence            5889999999999999987654

>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}

Probab=99.83  E-value=3.8e-20  Score=173.10  Aligned_cols=162  Identities=15%  Similarity=0.174  Sum_probs=130.5

Q ss_pred             hccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCC------CCC----CCCCchhhHHHHHHHhhcCCCcEEEecCc
Q 020431           40 VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (326)
Q Consensus        40 ~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~------~g~----~~~~~~~~~~~i~~~l~~~~~~ipVv~Gf  109 (326)
                      ++.|+.  ...++..|.++|++++.+++.+..++....      +|.    ..++.    +.++++++  .|.|||++|+
T Consensus       112 ~~~G~~--n~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~----~~i~~lL~--~g~IpVi~~v  183 (298)
T 2rd5_A          112 VLVGKV--NKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDP----SVLRPLVD--YGYIPVIASV  183 (298)
T ss_dssp             HHHHTH--HHHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECG----GGHHHHHH--TTCEEEEESE
T ss_pred             HHhchH--HHHHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECH----HHHHHHHh--CCCEEEEcCe
Confidence            336887  557899999999999999987553332211      221    12333    77888998  8999999998


Q ss_pred             cccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC--Ccccchh
Q 020431          110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR  187 (326)
Q Consensus       110 i~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g--~~v~~~~  187 (326)
                       +.++.|+..++   ++|++|+.+|.+|+|++++|||||||||++||+  | ++++++++++|+.+++..|  .++|.|+
T Consensus       184 -~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~K  256 (298)
T 2rd5_A          184 -AADDSGQAYNI---NADTVAGELAAALGAEKLILLTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPK  256 (298)
T ss_dssp             -EECTTSCEEEE---CHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHH
T ss_pred             -eECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHH
Confidence             78888988877   489999999999999999999999999999998  4 8999999999999998654  5789985


Q ss_pred             --hHHHHHhCCCC-EEEEeccCCC----------CCceEEeC
Q 020431          188 --TIIPVMRYDIP-IVIRNIFNLS----------VPGIMICR  216 (326)
Q Consensus       188 --a~~~a~~~~I~-v~I~n~~~~~----------~~GT~I~~  216 (326)
                        ++..+.++|++ ++|.|+..++          ..||.|.+
T Consensus       257 l~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~  298 (298)
T 2rd5_A          257 VKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG  298 (298)
T ss_dssp             HHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred             HHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence              78888999998 9999986543          35888753

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3

Probab=99.83  E-value=4.5e-20  Score=164.99  Aligned_cols=146  Identities=25%  Similarity=0.302  Sum_probs=117.7

Q ss_pred             ChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccc
Q 020431           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (326)
Q Consensus        32 ~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~  111 (326)
                      ++...+.+.+.++.+++.++...++.. +             ..     ..++.    +.++++++  .+.|||++|   
T Consensus        58 ~~~~l~~~~~~~~~~~~~l~~~~~~~~-~-------------~~-----~~~~~----~~i~~ll~--~g~ipVi~~---  109 (219)
T 2ij9_A           58 SETFCDYIGIAATRLNAMLLISAIPSA-A-------------KK-----VPVDF----MEAEELSK--LYRVVVMGG---  109 (219)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHCTTB-C-------------SS-----CCSSH----HHHHHHHT--TCSEEEECC---
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHh-c-------------CC-----CcCCH----HHHHHHHH--CCCEEEEeC---
Confidence            455667777778888888888766542 1             00     11344    77888998  899999998   


Q ss_pred             cCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhc-CC-----cccc
Q 020431          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLH  185 (326)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~-g~-----~v~~  185 (326)
                          |..    .|++|++|+.+|.+++|+++++||||||||++||+++|+++++++++++|+.+++.. |.     .+++
T Consensus       110 ----g~~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~  181 (219)
T 2ij9_A          110 ----TFP----GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVID  181 (219)
T ss_dssp             ----CSS----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSC
T ss_pred             ----CCC----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchH
Confidence                222    246899999999999999999999999999999999999999999999999999754 44     7889


Q ss_pred             hhhHHHHHhCCCCEEEEeccCC---------CCCceEE
Q 020431          186 PRTIIPVMRYDIPIVIRNIFNL---------SVPGIMI  214 (326)
Q Consensus       186 ~~a~~~a~~~~I~v~I~n~~~~---------~~~GT~I  214 (326)
                      +.|++.+.+.+++++|.|+ +|         +..||.|
T Consensus       182 ~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i  218 (219)
T 2ij9_A          182 LLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVI  218 (219)
T ss_dssp             HHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEE
T ss_pred             HHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEe
Confidence            9999999999999999997 43         3468877

>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*

Probab=99.82  E-value=4.2e-20  Score=169.27  Aligned_cols=155  Identities=15%  Similarity=0.100  Sum_probs=123.7

Q ss_pred             chHHHHHHHHHHHHHcCCceEEEcccceeeccCC-------CCCCC-CCCchhhHHHHHHHhhcCCCcEEEecCccccCC
Q 020431           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-------SSNQV-DPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (326)
Q Consensus        43 GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~-------~~g~~-~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~  114 (326)
                      ++.+++.++ +.|+++|+++..+++.+..+++..       ..|+. .++.    +.++++++  .+.|||++|+ +.+.
T Consensus        81 ~~~~n~~l~-~~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~----~~i~~ll~--~g~ipVi~~~-g~~~  152 (258)
T 1gs5_A           81 AGTANKTLL-AWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSP----KLINSLLE--NGYLPVVSSI-GVTD  152 (258)
T ss_dssp             HTHHHHHHH-HHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCC----HHHHHHHH--TTCEEEECSE-EECT
T ss_pred             hccchHHHH-HHHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECH----HHHHHHHH--CCCEEEEeCC-cCCC
Confidence            456666665 467999999999999886544431       12221 3455    77888998  8999999998 8889


Q ss_pred             CCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCC-----cccchhhH
Q 020431          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA-----NVLHPRTI  189 (326)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~-----~v~~~~a~  189 (326)
                      .|+++++   ++|++|+.+|.+|+|+ +++||||||||++|      ++++++++++|+.+++..|.     +..++.|+
T Consensus       153 ~g~~~~~---~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~  222 (258)
T 1gs5_A          153 EGQLMNV---NADQAATALAATLGAD-LILLSDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAAL  222 (258)
T ss_dssp             TSCEEEC---CHHHHHHHHHHHHTCE-EEEEESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHH
T ss_pred             CCcEEEe---cHHHHHHHHHHHhCCc-EEEEeCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence            9998887   4999999999999999 99999999999975      58999999999999976543     44455688


Q ss_pred             HHHHhCCCCEEEEeccCC---------CCCceEEe
Q 020431          190 IPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (326)
Q Consensus       190 ~~a~~~~I~v~I~n~~~~---------~~~GT~I~  215 (326)
                      +++.+.++|++|.|+.+|         +..||.|.
T Consensus       223 ~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~  257 (258)
T 1gs5_A          223 DAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             HHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             HHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence            888888999999997654         34688874

>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*

Probab=99.82  E-value=1.2e-19  Score=171.48  Aligned_cols=170  Identities=15%  Similarity=0.152  Sum_probs=133.2

Q ss_pred             hhHHhHh--hccchHHHHHHHHHHHHHcCCceEEEcccceeeccCC-----CCCCC----CCCchhhHHHHHHHhhcCCC
Q 020431           33 ESFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-----SSNQV----DPDFSESEKRLEKWFSQSPS  101 (326)
Q Consensus        33 ~~~~d~i--~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~-----~~g~~----~~~~~~~~~~i~~~l~~~~~  101 (326)
                      +...|.+  ++.|+.  ...++..|.++|++++.+++.+..++...     .+|..    .++.    +.++++++  .|
T Consensus       116 ~~~l~~~~~~~~G~i--n~~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~----~~i~~lL~--~g  187 (321)
T 2v5h_A          116 ADTMEVVEMVLVGRV--NKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNS----EVIEPLLE--RG  187 (321)
T ss_dssp             HHHHHHHHHHHHHTH--HHHHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECG----GGTHHHHH--TT
T ss_pred             HHHHHHHHHHHhChH--HHHHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecH----HHHHHHHH--CC
Confidence            3444543  346877  55789999999999999987754322211     12321    1344    67888888  89


Q ss_pred             cEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC-
Q 020431          102 NTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG-  180 (326)
Q Consensus       102 ~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g-  180 (326)
                      .|||++++ +.++.|+..++   ++|++|+.+|.+|+|++++|+|||||||++||+   +++++++++++|+.+++..| 
T Consensus       188 ~IpVi~~v-~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~  260 (321)
T 2v5h_A          188 YIPVISSV-AADENGQSFNI---NADTVAGEIAAALNAEKLILLTDTRGILEDPKR---PESLIPRLNIPQSRELIAQGI  260 (321)
T ss_dssp             CEEEEESE-EECTTSCEEEC---CHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTS
T ss_pred             CeEEEeCc-eECCCCCEEEe---CHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCC
Confidence            99999964 88888876544   589999999999999999999999999999998   58999999999999998754 


Q ss_pred             -Ccccch--hhHHHHHhCCCC-EEEEeccCC----------CCCceEEeCC
Q 020431          181 -ANVLHP--RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (326)
Q Consensus       181 -~~v~~~--~a~~~a~~~~I~-v~I~n~~~~----------~~~GT~I~~~  217 (326)
                       +++|+|  +++..|.++|++ ++|.|+..+          +..||.|.+.
T Consensus       261 ~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~  311 (321)
T 2v5h_A          261 VGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS  311 (321)
T ss_dssp             SCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred             CcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence             678999  588999999998 999997544          3569999764

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=99.81  E-value=2.6e-19  Score=165.15  Aligned_cols=124  Identities=15%  Similarity=0.166  Sum_probs=100.8

Q ss_pred             HHHHHHhhcCCCcEEEecCccccCCCCCccccc---CCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEe
Q 020431           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLK---RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR  166 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lg---rggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~  166 (326)
                      +.++++++  .+.|||++|+.+.+.....++.|   .+++|++|+.+|.+++|+++++||||||||++||+.+|++++++
T Consensus       132 ~~i~~lL~--~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~  209 (270)
T 2ogx_B          132 SAVPLSLA--EVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIP  209 (270)
T ss_dssp             CHHHHHCT--TCCEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEES
T ss_pred             HHHHHHHh--CCCEEEEeCCccccccccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcc
Confidence            45888888  89999999997755322211222   37899999999999999999999999999999999999999999


Q ss_pred             eecHHHHHHHhhcCCcccchhhHHHHHh--CCCCEEEEeccCCC---------CCceEEeC
Q 020431          167 TLSYQEAWEMSYFGANVLHPRTIIPVMR--YDIPIVIRNIFNLS---------VPGIMICR  216 (326)
Q Consensus       167 ~ls~~e~~~l~~~g~~v~~~~a~~~a~~--~~I~v~I~n~~~~~---------~~GT~I~~  216 (326)
                      +++++|+.+++..| +++++.+...+..  .+++++|.|+.+|+         ..||.|.+
T Consensus       210 ~i~~~e~~~~~~~g-~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~  269 (270)
T 2ogx_B          210 RISVDEMKAKGLHD-SILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA  269 (270)
T ss_dssp             EEEHHHHHHTTCCC-TTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             eeCHHHHHHHhcCC-CcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence            99999999987544 5788777666665  56799999997654         56999864

>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2

Probab=99.81  E-value=2.8e-19  Score=165.89  Aligned_cols=157  Identities=18%  Similarity=0.147  Sum_probs=126.9

Q ss_pred             ccchHHHHHHHHHHHHHcCCceEEEcccceeeccCC------CCCC----CCCCchhhHHHHHHHhhcCCCcEEEecCcc
Q 020431           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (326)
Q Consensus        41 ~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~------~~g~----~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi  110 (326)
                      +.|+.  ...++..|+++|++++.+++.+..++...      .+|.    ..++.    +.++++++  .|.|||++|+ 
T Consensus        98 ~~G~~--~~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~----~~i~~ll~--~g~IpVi~~v-  168 (282)
T 2bty_A           98 LVGKI--NKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNP----EILHALIE--NDYIPVIAPV-  168 (282)
T ss_dssp             HHHTH--HHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECT----HHHHHHHH--TTCEEEEESE-
T ss_pred             HhhHH--HHHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecH----HHHHHHHH--CCCEEEECCC-
Confidence            36887  56689999999999999988754332211      1232    12344    78899998  8999999998 


Q ss_pred             ccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC--Ccccch--
Q 020431          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP--  186 (326)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g--~~v~~~--  186 (326)
                      +.++.|+..++   ++|++|+.+|.+++|+++++||||||||++     |  +++++++++|+.+++..|  .++|.|  
T Consensus       169 ~~~~~G~~~~~---~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-----~--~~i~~i~~~e~~~~~~~g~~~gGM~~K~  238 (282)
T 2bty_A          169 GIGEDGHSYNI---NADTAAAEIAKSLMAEKLILLTDVDGVLKD-----G--KLISTLTPDEAEELIRDGTVTGGMIPKV  238 (282)
T ss_dssp             EECSSSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCEET-----T--EECCEECHHHHHHHHTTTCSCTTHHHHH
T ss_pred             ccCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeecC-----c--hhhhhCCHHHHHHHHHcCCCCCcHHHHH
Confidence            88888988877   489999999999999999999999999997     2  899999999999998754  467877  


Q ss_pred             hhHHHHHhCCCC-EEEEeccCCC----------CCceEEeC
Q 020431          187 RTIIPVMRYDIP-IVIRNIFNLS----------VPGIMICR  216 (326)
Q Consensus       187 ~a~~~a~~~~I~-v~I~n~~~~~----------~~GT~I~~  216 (326)
                      +++..+.++|++ ++|.|+..|+          ..||.|.+
T Consensus       239 ~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~  279 (282)
T 2bty_A          239 ECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKE  279 (282)
T ss_dssp             HHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECC
T ss_pred             HHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEe
Confidence            588999999998 9999976543          46999975

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*

Probab=99.79  E-value=5.2e-19  Score=161.33  Aligned_cols=145  Identities=16%  Similarity=0.161  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCC
Q 020431           45 LWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD  124 (326)
Q Consensus        45 ~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrg  124 (326)
                      .++..+ .+.|.++|++++.+++.++...     |+.  +.    +.++++++  .|.|||++|+++.+.+|++.+   +
T Consensus        83 ~ln~~~-v~~l~~~G~~a~~l~~~~~~~~-----g~v--~~----~~i~~ll~--~g~ipVi~~~~~~~~~~~~~~---~  145 (249)
T 3ll5_A           83 NLDLMV-IDAMIEMGMRPISVPISALRYD-----GRF--DY----TPLIRYID--AGFVPVSYGDVYIKDEHSYGI---Y  145 (249)
T ss_dssp             HHHHHH-HHHHHHTTCCEEECCGGGSCBS-----SSB--CC----HHHHHHHH--TTCEEEEECEEEEEETTEEEE---E
T ss_pred             HHHHHH-HHHHHHCCCcEEEEcHHHcccc-----cEE--cH----HHHHHHHH--CCCEEEECCCEEEcCCCceee---e
Confidence            444444 4889999999999999888541     333  55    88999998  899999999888776666554   3


Q ss_pred             cchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHh--hcCCcccchh--hHHHH-HhCCCCE
Q 020431          125 GSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS--YFGANVLHPR--TIIPV-MRYDIPI  199 (326)
Q Consensus       125 gsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~--~~g~~v~~~~--a~~~a-~~~~I~v  199 (326)
                      ++|++|+.+|.+++|++++|||||||||++||+.+|+++++++++ +++....  ..+.++|.|+  ++..+ .++|+++
T Consensus       146 ~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v  224 (249)
T 3ll5_A          146 SGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGV  224 (249)
T ss_dssp             CHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCE
T ss_pred             cHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEE
Confidence            589999999999999999999999999999999999999999994 2222221  2346788885  55555 8899999


Q ss_pred             EEEeccCC
Q 020431          200 VIRNIFNL  207 (326)
Q Consensus       200 ~I~n~~~~  207 (326)
                      +|.|+..+
T Consensus       225 ~I~~g~~~  232 (249)
T 3ll5_A          225 YLINGNHP  232 (249)
T ss_dssp             EEEETTSG
T ss_pred             EEEeCCCh
Confidence            99997543

>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2

Probab=99.77  E-value=3.6e-18  Score=159.87  Aligned_cols=167  Identities=14%  Similarity=0.186  Sum_probs=131.9

Q ss_pred             hhHHhHh--hccchHHHHHHHHHHHHHcCCceEEEcccceeeccCC-----------------CCCCC----CCCchhhH
Q 020431           33 ESFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-----------------SSNQV----DPDFSESE   89 (326)
Q Consensus        33 ~~~~d~i--~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~-----------------~~g~~----~~~~~~~~   89 (326)
                      +...+.+  ++.|+.  ...++..|.++|++++.+++.+..+....                 .+|..    .++    .
T Consensus        93 ~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~----~  166 (300)
T 2buf_A           93 AATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVN----V  166 (300)
T ss_dssp             HHHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEEC----H
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEEC----H
Confidence            3444544  446888  88999999999999999987654332111                 12221    123    3


Q ss_pred             HHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeec
Q 020431           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls  169 (326)
                      +.++++++  .|.|||++++ +.++.|+..++   ++|++|+.+|.+++|++++|+|||||||++      +++++++++
T Consensus       167 ~~i~~lL~--~g~IpVi~~v-~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~  234 (300)
T 2buf_A          167 GLLNMLVK--GDFIPVIAPI-GVGSNGESYNI---NADLVAGKVAEALKAEKLMLLTNIAGLMDK------QGQVLTGLS  234 (300)
T ss_dssp             HHHHHHHH--TTCEEEEEEE-EECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSCCBCT------TSCBCCEEC
T ss_pred             HHHHHHHH--CCCEEEEcCc-eeCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeECC------CCcChhhCC
Confidence            78899998  8999999954 77888888766   489999999999999999999999999987      488999999


Q ss_pred             HHHHHHHhhcC--Ccccch--hhHHHHHhCCCC-EEEEeccCCC----------CCceEEeCC
Q 020431          170 YQEAWEMSYFG--ANVLHP--RTIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP  217 (326)
Q Consensus       170 ~~e~~~l~~~g--~~v~~~--~a~~~a~~~~I~-v~I~n~~~~~----------~~GT~I~~~  217 (326)
                      ++|+.+++..|  +++|+|  +++..+.++|++ ++|.|+..++          ..||.|.+.
T Consensus       235 ~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~  297 (300)
T 2buf_A          235 TEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR  297 (300)
T ss_dssp             HHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence            99999998654  688999  588889999999 9999976543          469999763

>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}

Probab=99.77  E-value=1.1e-18  Score=161.52  Aligned_cols=148  Identities=14%  Similarity=0.256  Sum_probs=125.0

Q ss_pred             HHHHHHHHHcCCceEEEcccceeeccCCC-----CCC----CCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcc
Q 020431           49 QMLAAVVRKNGIDCKWMDTREVLIVNPTS-----SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPT  119 (326)
Q Consensus        49 ~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~-----~g~----~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~  119 (326)
                      +.+++.|.++|+++..+++.+..+++...     |+.    .+++.    +.|+++++  .|.|||++| ++.+++|+..
T Consensus       117 ~~i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~----~~i~~lL~--~g~IPVi~~-v~~~~~G~~~  189 (279)
T 3l86_A          117 KNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINK----RVIEEFLE--NRQIPILAS-LGYSKEGDML  189 (279)
T ss_dssp             HHHHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECH----HHHHHHHH--TTCEEEEES-EEECTTSCEE
T ss_pred             HHHHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhH----HHHHHHHh--CCcEEEECC-cEECCCCCEe
Confidence            77899999999999999999865555432     111    12344    88999998  899999999 7888889888


Q ss_pred             cccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC--Ccccch--hhHHHHHhC
Q 020431          120 TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP--RTIIPVMRY  195 (326)
Q Consensus       120 ~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g--~~v~~~--~a~~~a~~~  195 (326)
                      ++   ++|++|+.+|.+|+|++++|+|||||||+       +++++++++++|+.+++..|  .++|.|  +++..|.++
T Consensus       190 ~i---~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~  259 (279)
T 3l86_A          190 NI---NADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAA  259 (279)
T ss_dssp             EC---CHHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHT
T ss_pred             ec---CHHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHc
Confidence            77   48999999999999999999999999994       47899999999999997643  578888  588999999


Q ss_pred             CCC-EEEEeccCCCCCceEEeC
Q 020431          196 DIP-IVIRNIFNLSVPGIMICR  216 (326)
Q Consensus       196 ~I~-v~I~n~~~~~~~GT~I~~  216 (326)
                      |++ +.|.|+++.   ||+|..
T Consensus       260 Gv~~v~I~~~~~~---GT~i~~  278 (279)
T 3l86_A          260 GVGQVLIGDNLLT---GTLITA  278 (279)
T ss_dssp             TCSEEEEESSSSC---SEEEEC
T ss_pred             CCCEEEEeccCCC---CeEEec
Confidence            998 999999873   999964

>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1

Probab=99.76  E-value=5.1e-18  Score=159.77  Aligned_cols=119  Identities=17%  Similarity=0.137  Sum_probs=98.3

Q ss_pred             HHHHHHhhcCCCcEEEecCccc----cCCCCCccccc---CCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCC
Q 020431           90 KRLEKWFSQSPSNTIIATGFIA----STPDNIPTTLK---RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi~----~~~~g~~~~lg---rggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a  162 (326)
                      +.++++++  .|.|||++|+.|    .+.++   ++|   ++++|++|+.+|..++|++++++|||||||++||  .|++
T Consensus       177 ~~i~~lL~--~g~IpV~~Gg~giPi~~~~d~---~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a  249 (314)
T 1e19_A          177 ETIKKLVE--RGVIVIASGGGGVPVILEDGE---IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKE  249 (314)
T ss_dssp             HHHHHHHH--TTCEEECSGGGCEEEEEETTE---EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTC
T ss_pred             HHHHHHHH--CCCEEEEeCCCccCeEECCCC---cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCC
Confidence            78999998  899999998633    23332   344   3889999999999999999999999999999999  4899


Q ss_pred             eEEeeecHHHHHHHhhcC---Ccccchh---hHHHHHhCCCCEEEEec------cCCCCCceEEeC
Q 020431          163 VILRTLSYQEAWEMSYFG---ANVLHPR---TIIPVMRYDIPIVIRNI------FNLSVPGIMICR  216 (326)
Q Consensus       163 ~~i~~ls~~e~~~l~~~g---~~v~~~~---a~~~a~~~~I~v~I~n~------~~~~~~GT~I~~  216 (326)
                      +++++++++|+.+++..|   .++|.||   |++.+.+.+++++|.|.      ++. ..||.|.+
T Consensus       250 ~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~  314 (314)
T 1e19_A          250 QWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP  314 (314)
T ss_dssp             EECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred             eECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence            999999999999997644   4789997   66778888999999983      333 47999864

>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*

Probab=99.70  E-value=1.1e-16  Score=147.21  Aligned_cols=146  Identities=14%  Similarity=0.090  Sum_probs=112.0

Q ss_pred             HHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchH
Q 020431           49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDF  128 (326)
Q Consensus        49 ~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~  128 (326)
                      +.+++.|.++|+++..+.+.++.+.+++    ..++.    +.++.+++  .+.|||++||++.+.+|++.+   +++|+
T Consensus       101 ~~l~~~l~~~G~~a~~l~~~d~~~~~~g----~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~g~~~~---~~~D~  167 (266)
T 3k4o_A          101 NIIIDTLQSYDIPAVSIQPSSFVVFGDK----LIFDT----SAIKEMLK--RNLVPVIHGDIVIDDKNGYRI---ISGDD  167 (266)
T ss_dssp             HHHHHHHHTTTCCEEEECGGGTCEESSS----CBCCC----HHHHHHHH--TTCEEEEECEEEEESSSCEEE---ECHHH
T ss_pred             HHHHHHHHHCCCcEEEeeHHHcCcccCc----eEecH----HHHHHHHH--CCCEEEEeCCEEEcCCCCeee---eCHHH
Confidence            3478899999999999999998766542    23566    88999998  899999999988888777643   56899


Q ss_pred             HHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhh--------cCCcccchh--hHHHHHhCCCC
Q 020431          129 SAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--------FGANVLHPR--TIIPVMRYDIP  198 (326)
Q Consensus       129 ~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~--------~g~~v~~~~--a~~~a~~~~I~  198 (326)
                      +|+.+|.+|+|+++++|||||||| +||+.      +++++.+|+.++..        .+..+|.|+  ++..+.+   +
T Consensus       168 ~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~------i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~---~  237 (266)
T 3k4o_A          168 IVPYLANELKADLILYATDVDGVL-IDNKP------IKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC---R  237 (266)
T ss_dssp             HHHHHHHHHTCSEEEEEESSSSSB-SSSSB------CSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC---E
T ss_pred             HHHHHHHHcCCCEEEEEecCCeEE-eCCee------cCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc---C
Confidence            999999999999999999999999 88764      45555444444432        345678886  3333333   9


Q ss_pred             EEEEeccCC---------CCCceEEeCC
Q 020431          199 IVIRNIFNL---------SVPGIMICRP  217 (326)
Q Consensus       199 v~I~n~~~~---------~~~GT~I~~~  217 (326)
                      ++|.|+..+         +..||.|.+.
T Consensus       238 v~I~~g~~~~~l~~~l~g~~~GT~i~~~  265 (266)
T 3k4o_A          238 GFVFNGNKANNIYKALLGEVEGTEIDFS  265 (266)
T ss_dssp             EEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred             EEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence            999998644         3569999863

>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=99.68  E-value=4.1e-16  Score=146.85  Aligned_cols=119  Identities=19%  Similarity=0.233  Sum_probs=95.1

Q ss_pred             HHHHHHhhcCCCcEEEecCcc----ccCCCCC----cccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCC
Q 020431           90 KRLEKWFSQSPSNTIIATGFI----ASTPDNI----PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE  161 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi----~~~~~g~----~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~  161 (326)
                      +.++++++  .|.|||++|+-    +.+++|.    ..++   ++|++|+.+|.+|+|+.++|+|||||||+ ||+ .|+
T Consensus       177 ~~i~~lL~--~g~IpI~~g~~g~pv~~~~~g~~~g~~~~i---d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~  249 (316)
T 2e9y_A          177 DLIAEASA--ESPAVVALGGGGVPVVERPGGVLEPVEAVV---DKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REG  249 (316)
T ss_dssp             HHHHHHHH--HCSEEEECGGGCEEEEECTTSCEEECSCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STT
T ss_pred             HHHHHHHH--CCCEEEEECCCCCCeeECCCCCeecceeee---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCC
Confidence            78999998  89999998753    3356663    2222   58999999999999999999999999999 885 689


Q ss_pred             CeEEeeecHHHHHHHhhc---CCcccchh--hHHHHHhCCC-CEEEEecc------CCCCCceEEeC
Q 020431          162 AVILRTLSYQEAWEMSYF---GANVLHPR--TIIPVMRYDI-PIVIRNIF------NLSVPGIMICR  216 (326)
Q Consensus       162 a~~i~~ls~~e~~~l~~~---g~~v~~~~--a~~~a~~~~I-~v~I~n~~------~~~~~GT~I~~  216 (326)
                      ++++++++++|+.+++..   +.++|.|+  ++..+.++|+ ++.|.|..      +. ..||.|.+
T Consensus       250 a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~  315 (316)
T 2e9y_A          250 ERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML  315 (316)
T ss_dssp             CEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred             CcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence            999999999999999763   44678885  6667778899 78887632      22 46898864

>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*

Probab=99.65  E-value=1.2e-15  Score=142.68  Aligned_cols=166  Identities=14%  Similarity=0.124  Sum_probs=123.3

Q ss_pred             hHHhHhh-ccchHHHHHHHHHHHHHcCCceEEEcccceeeccC-C--CCC---C-CCCCchhhHHHHHHHhhcCCCcEEE
Q 020431           34 SFTDFVV-GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP-T--SSN---Q-VDPDFSESEKRLEKWFSQSPSNTII  105 (326)
Q Consensus        34 ~~~d~i~-~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~-~--~~g---~-~~~~~~~~~~~i~~~l~~~~~~ipV  105 (326)
                      +..+.+. +.|+ ++ ..+++.|.++|++|+++++.-+ .... +  .+|   + .++|.    +.|+.+++  .|.|||
T Consensus       114 ~~l~vv~m~~~~-vn-~~lv~~L~~~G~~Av~l~gg~~-~a~~~~~~d~g~~G~i~~v~~----~~i~~lL~--~g~IpV  184 (307)
T 3zzh_A          114 HTMAVVRKCFLE-QN-LKLVTALEQLGVRARPITSGVF-TADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALPI  184 (307)
T ss_dssp             HHHHHHHHHHHH-HH-HHHHHHHHHTTCCEEEECSSSE-EEEESCHHHHBSBEEEEEECC----HHHHHHHH--HTCEEE
T ss_pred             HHHHHHHHHHHH-HH-HHHHHHHHhCCCCeeEEcCCcE-EEEecCccccCccccccccCH----HHHHHHHH--CCCEEE
Confidence            4444432 3464 44 6668999999999999987422 2210 0  122   2 24666    88999998  899999


Q ss_pred             ecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHH-HHHHhhc--CCc
Q 020431          106 ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYF--GAN  182 (326)
Q Consensus       106 v~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e-~~~l~~~--g~~  182 (326)
                      ++|+ +.+.+|++.++   ++|++|+.+|.+|+|++++|+|||||||++     |++++++++++.| +.++...  +.+
T Consensus       185 i~~~-g~~~~G~~~~i---~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tG  255 (307)
T 3zzh_A          185 LTSL-AETASGQMLNV---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKY  255 (307)
T ss_dssp             ECCC-EECTTCBEEBC---CHHHHHHHHHHHHCCSEEEEECSSCSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCH
T ss_pred             EeCC-eECCCCcEEec---CHHHHHHHHHHhCCCCEEEEEeCCcceecC-----CCCcCCcccCHHHHHHHHHhCCCCCC
Confidence            9998 77888988876   489999999999999999999999999986     5789999999976 5677654  357


Q ss_pred             ccchh--hHHHHHhC---CCCEEEEecc-------CCCCCceEEeCC
Q 020431          183 VLHPR--TIIPVMRY---DIPIVIRNIF-------NLSVPGIMICRP  217 (326)
Q Consensus       183 v~~~~--a~~~a~~~---~I~v~I~n~~-------~~~~~GT~I~~~  217 (326)
                      +|.|+  +++.|.+.   +.++.|.+..       ..+..||.|.+.
T Consensus       256 GM~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~I~~~  302 (307)
T 3zzh_A          256 GTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG  302 (307)
T ss_dssp             HHHHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEEEECC
T ss_pred             cHHHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEEEecC
Confidence            88886  34444443   7889998742       345679999763

>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*

Probab=99.63  E-value=1.7e-15  Score=149.27  Aligned_cols=157  Identities=15%  Similarity=0.111  Sum_probs=120.5

Q ss_pred             cchHHHHHHHHHHHHHcCCce----EEEcccceeeccCCC--------CCC----CCCCchhhHHHHHHHhhcCCCcEEE
Q 020431           42 HGELWSAQMLAAVVRKNGIDC----KWMDTREVLIVNPTS--------SNQ----VDPDFSESEKRLEKWFSQSPSNTII  105 (326)
Q Consensus        42 ~GE~~s~~~~~~~L~~~Gi~a----~~l~~~~~~~~~~~~--------~g~----~~~~~~~~~~~i~~~l~~~~~~ipV  105 (326)
                      .|+.  ...+.+.|. +|+++    +.+++.+..+.+...        +|.    ..++.    +.|+++++  .|.|||
T Consensus       119 ~G~~--~~~l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~----~~i~~lL~--~g~ipI  189 (456)
T 3d2m_A          119 AGTV--RSRFEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDT----AALRFQLD--AGNIVW  189 (456)
T ss_dssp             HHHH--HHHHHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECH----HHHHHHHH--TTCEEE
T ss_pred             HhHH--HHHHHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECH----HHHHHHHH--CCCeEE
Confidence            4644  345677888 99998    777776643333211        121    12333    88999998  899999


Q ss_pred             ecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccc
Q 020431          106 ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH  185 (326)
Q Consensus       106 v~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~  185 (326)
                      ++++ +.+..|+..++   ++|++|+.+|.+++|+.++|+|||||||++      +++++++++++|+.+++..|.++|.
T Consensus       190 i~~~-~~~~~g~~~~~---~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~  259 (456)
T 3d2m_A          190 MPPL-GHSYGGKTFNL---DMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETR  259 (456)
T ss_dssp             ECSE-EECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHH
T ss_pred             ECCc-ccCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEECCccccCC------CCCccccCCHHHHHHHHhccCCChH
Confidence            9997 77888988876   489999999999999999999999999986      6889999999999999877779999


Q ss_pred             h--hhHHHHHhCCCC-EEEEeccCC----------CCCceEEeCC
Q 020431          186 P--RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (326)
Q Consensus       186 ~--~a~~~a~~~~I~-v~I~n~~~~----------~~~GT~I~~~  217 (326)
                      |  +++..|.++|++ +.|.|+..|          +..||.|.+.
T Consensus       260 ~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~  304 (456)
T 3d2m_A          260 RLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKE  304 (456)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECC
T ss_pred             HHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecc
Confidence            9  588888899996 999997432          3569999765

>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*

Probab=99.60  E-value=1.7e-14  Score=141.64  Aligned_cols=158  Identities=14%  Similarity=0.141  Sum_probs=121.7

Q ss_pred             cchHHHHHHHHHHHHHcCCceEEEcccceeecc---CCCCC---C-CCCCchhhHHHHHHHhhcCCCcEEEecCccccCC
Q 020431           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN---PTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (326)
Q Consensus        42 ~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~---~~~~g---~-~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~  114 (326)
                      .|+ + .+.+++.|.++|++|+++.+.-+ ...   ...+|   + ..++.    +.|+.+++  .|.|||++|+ +.+.
T Consensus       123 ~~~-v-n~~lv~~L~~~G~~Avglsgg~~-~a~~~~~~d~g~vG~I~~v~~----~~I~~lL~--~G~IPVi~~~-g~~~  192 (464)
T 4ab7_A          123 FLE-Q-NLKLVTALEQLGVRARPITSGVF-TADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALPILTSL-AETA  192 (464)
T ss_dssp             HHH-H-HHHHHHHHHHTTCCEEEECSSSE-EEEESCTTTTBSBEEEEEECC----HHHHHHHH--TTCEEEEESE-EECT
T ss_pred             HHH-H-HHHHHHHHHhCCCCeEEECCCcE-EEEecCccccCCcCcccccCH----HHHHHHHH--CCcEEEEcCC-cCCC
Confidence            354 3 46678999999999999987332 221   11223   2 24666    88999998  8999999997 8888


Q ss_pred             CCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHH-HHHHhhc--CCcccchh--hH
Q 020431          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYF--GANVLHPR--TI  189 (326)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e-~~~l~~~--g~~v~~~~--a~  189 (326)
                      +|++.++   ++|++|+.+|.+|+|++++++|||||||++     |++++++++++.| +.++...  +.++|.|+  ++
T Consensus       193 ~G~~~ni---~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa  264 (464)
T 4ab7_A          193 SGQMLNV---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREI  264 (464)
T ss_dssp             TCBEEEC---CHHHHHHHHHHHHCCSEEEEEESSCSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             CCCEEEe---cHHHHHHHHHHHcCCCEEEEEecccccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence            8988876   489999999999999999999999999986     4789999999976 5667654  35789996  55


Q ss_pred             HHHHhC---CCCEEEEecc-------CCCCCceEEeCC
Q 020431          190 IPVMRY---DIPIVIRNIF-------NLSVPGIMICRP  217 (326)
Q Consensus       190 ~~a~~~---~I~v~I~n~~-------~~~~~GT~I~~~  217 (326)
                      +.|.+.   +.++.|.+..       ..+..||.|.+.
T Consensus       265 ~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~GT~I~~~  302 (464)
T 4ab7_A          265 KELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG  302 (464)
T ss_dssp             HHHHTTSCTTCEEEEEESTTHHHHTTSSSTTSEEEECC
T ss_pred             HHHHHhcccCcEEEEecChHHHHHHhcCCCCceEEecC
Confidence            566554   7788888742       345679999876

>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*

Probab=99.60  E-value=3.5e-15  Score=140.16  Aligned_cols=119  Identities=16%  Similarity=0.197  Sum_probs=94.9

Q ss_pred             HHHHHHhhcCCCcEEEecCccccC-----CCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeE
Q 020431           90 KRLEKWFSQSPSNTIIATGFIAST-----PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi~~~-----~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~  164 (326)
                      +.++++++  .|.|||++|+.|..     ..|+..+   +++|++|+.+|.+++|++++|+|||||||+ || ..|++++
T Consensus       173 ~~i~~lL~--~g~IpIi~Gg~Gipv~~~~~~g~~~~---~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~  245 (310)
T 2we5_A          173 ETINTLIK--NDIITISCGGGGIPVVGQELKGVEAV---IDKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQ  245 (310)
T ss_dssp             HHHHHHHH--TTCEEECCGGGCEEEETTTTEECCCC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEE
T ss_pred             HHHHHHHH--CCCEEEEECCCCCCCcCCCCCCcEee---cCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeE
Confidence            88999998  89999999874421     2233333   358999999999999999999999999999 88 4789999


Q ss_pred             EeeecHHHHHHHhhcC---Ccccchh--hHHHHHhCCC--CEEEEec------cCCCCCceEEe
Q 020431          165 LRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI--PIVIRNI------FNLSVPGIMIC  215 (326)
Q Consensus       165 i~~ls~~e~~~l~~~g---~~v~~~~--a~~~a~~~~I--~v~I~n~------~~~~~~GT~I~  215 (326)
                      +++++++|+.+++..|   .++|.|+  ++..+.+.|+  +++|.+.      +..+..||.|.
T Consensus       246 i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~  309 (310)
T 2we5_A          246 LTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT  309 (310)
T ss_dssp             CCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred             CCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence            9999999999997643   4778885  7777788898  7888752      23335688874

>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}

Probab=99.56  E-value=1.5e-14  Score=134.90  Aligned_cols=122  Identities=14%  Similarity=0.128  Sum_probs=95.0

Q ss_pred             HHHHHHhhcCCCcEEEecCcccc---CCCCCcc-cccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEE
Q 020431           90 KRLEKWFSQSPSNTIIATGFIAS---TPDNIPT-TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi~~---~~~g~~~-~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i  165 (326)
                      +.|+.+|+  .|.|||++|+.|.   ++++..+ +...+++|++|+.+|..|+|+.++|+|||||||+ ||+ .|+++++
T Consensus       179 ~~I~~LL~--~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I  254 (317)
T 3kzf_A          179 GVIKTLID--NNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKL  254 (317)
T ss_dssp             HHHHHHHH--TTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEEC
T ss_pred             HHHHHHHH--CCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeEC
Confidence            78888998  8999999877554   2333332 3335679999999999999999999999999999 999 5899999


Q ss_pred             eeecHHHHHHHhhc---CCcccchh--hHHH-HHhCCCCEEEEecc------CCCCCceEEeC
Q 020431          166 RTLSYQEAWEMSYF---GANVLHPR--TIIP-VMRYDIPIVIRNIF------NLSVPGIMICR  216 (326)
Q Consensus       166 ~~ls~~e~~~l~~~---g~~v~~~~--a~~~-a~~~~I~v~I~n~~------~~~~~GT~I~~  216 (326)
                      ++++++|+.++...   +.+.|.|+  ++.. +.+.+.++.|.|..      +.+ .||.|.+
T Consensus       255 ~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~-~GT~I~~  316 (317)
T 3kzf_A          255 EEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGK-CGTRIIK  316 (317)
T ss_dssp             CEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTS-SSEEEEC
T ss_pred             cCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCC-CCeEEec
Confidence            99999999998753   34688885  4444 45556789999864      333 6999976

>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*

Probab=99.54  E-value=5e-14  Score=138.47  Aligned_cols=158  Identities=13%  Similarity=0.105  Sum_probs=119.2

Q ss_pred             cchHHHHHHHHHHHHHcCCceEEEccccee--eccCCCCCC----CCCCchhhHHHHHHHhhcCCCcEEEecCccccCCC
Q 020431           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPTSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (326)
Q Consensus        42 ~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~--~~~~~~~g~----~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~  115 (326)
                      .| .++ ..+++.|.++|++|+++.+..+.  ..++..+|.    ..++.    +.|+.+++  .|.|||++++ +.+..
T Consensus       133 lg-~vn-~~lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpVi~p~-g~~~~  203 (460)
T 3s6g_A          133 LT-QAN-LALVDAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHL----DLVGSAAR--AGQAAILACL-GETPD  203 (460)
T ss_dssp             HH-HHH-HHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECC----HHHHHHHH--TTCEEEEECE-EECTT
T ss_pred             HH-HHH-HHHHHHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcH----HHHHHHHH--CCcEEEEECc-eECCC
Confidence            46 555 44556999999999999985441  112223332    24666    88999998  8999999986 77888


Q ss_pred             CCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHH-HHHHHhhc--CCcccchh--hHH
Q 020431          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYF--GANVLHPR--TII  190 (326)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~-e~~~l~~~--g~~v~~~~--a~~  190 (326)
                      |+..++   ++|.+|+.+|.+|+|++++++|||||||++      +++++++++.. |+.++...  +.++|.|+  ++.
T Consensus       204 G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~  274 (460)
T 3s6g_A          204 GTLVNI---NADVAVRALVHALQPYKVVFLTGTGGLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIK  274 (460)
T ss_dssp             CCEEEE---CHHHHHHHHHHHHCCSEEEEECSSCSCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred             CcEEec---CHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence            988876   489999999999999999999999999984      47899999986 78888764  35788885  666


Q ss_pred             HHHhCCCCEEEEecc----------CCCCCceEEeCC
Q 020431          191 PVMRYDIPIVIRNIF----------NLSVPGIMICRP  217 (326)
Q Consensus       191 ~a~~~~I~v~I~n~~----------~~~~~GT~I~~~  217 (326)
                      .+.+...++.+.++.          ..+..||.|.+.
T Consensus       275 ~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~  311 (460)
T 3s6g_A          275 RLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG  311 (460)
T ss_dssp             HHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred             HHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence            666643246666653          234579999875

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=99.51  E-value=2.6e-14  Score=125.77  Aligned_cols=126  Identities=20%  Similarity=0.169  Sum_probs=92.1

Q ss_pred             CcccchhhHHHHHhCCCCEEEEeccCCCC-Cce-EEe--CCCCCCCcc---hhh--ccCCeeeEEeecCeEEEEEecCCC
Q 020431          181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSV-PGI-MIC--RPPVDENED---EQI--IDSPVKGFATIDNLALVNVEGTGM  251 (326)
Q Consensus       181 ~~v~~~~a~~~a~~~~I~v~I~n~~~~~~-~GT-~I~--~~~~~~~~~---~~~--~~~~v~~I~~~~~ia~IsivG~~~  251 (326)
                      ..++-.+.+..+.++||.+-++.+...+. .++ .+.  ....+....   ...  ..-....+.+.+++|+|++||.+|
T Consensus        46 ~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~~~~~iakVSvVG~GM  125 (200)
T 4go7_X           46 IPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGM  125 (200)
T ss_dssp             STTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEEEECCEEEEEEEEESC
T ss_pred             CccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHhhhceeeEEEecCeeeeeeecccc
Confidence            34555567888888999877766543221 222 221  110000000   000  111356789999999999999999


Q ss_pred             CCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHh
Q 020431          252 AGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (326)
Q Consensus       252 ~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~  308 (326)
                      ++.||+++|+|++|++.||||.||+  +||.+|||+|+++|.++|+++||++|++.-
T Consensus       126 ~~~~GVaak~F~aLa~~~INI~mIs--tSEi~IS~vV~~~d~~~Av~aLH~~F~L~~  180 (200)
T 4go7_X          126 RSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAFGLGG  180 (200)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHHTC--
T ss_pred             ccCCCcHHHHHHHHHHCCCCEEEEE--ccCCEEEEEEeHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999  899999999999999999999999997653

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=99.47  E-value=6e-14  Score=118.99  Aligned_cols=120  Identities=17%  Similarity=0.142  Sum_probs=85.1

Q ss_pred             ccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHH
Q 020431          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIF  262 (326)
Q Consensus       183 v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if  262 (326)
                      ++..+.+..+.++||++...++...  .=+...++...-....+.. .....+++.+++++|+++|.+|++.||+++++|
T Consensus        33 g~~~~if~~La~~~I~vd~I~~s~~--~Isf~v~~~~~~~~il~~l-~~~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f  109 (157)
T 3mah_A           33 HFMRKLFEIFEFYQEPVDMVATSEV--GVSLTIDNDKNLPDIVRAL-SDIGDVTVDKDMVIICIVGDMEWDNVGFEARII  109 (157)
T ss_dssp             HHHHHHHHHHHHTTCCCSCEECCSS--EEEEEESCCTTHHHHHHHH-TTTEEEEEEEEEEEEEEEC------CCHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCEEEEEecCC--EEEEEECChHHHHHHHHHH-hccCeEEEeCCeEEEEEECCCcccCccHHHHHH
Confidence            3445667888899998777665421  1122223211000011111 225788999999999999999999999999999


Q ss_pred             HHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHH
Q 020431          263 GAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (326)
Q Consensus       263 ~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (326)
                      ++|+  ||||.||+|++|+.+|+|+|+++|.+++++.||++|+..
T Consensus       110 ~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh~~f~~~  152 (157)
T 3mah_A          110 NALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNS  152 (157)
T ss_dssp             HTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHHHHHHC-
T ss_pred             HHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHHHHHhcc
Confidence            9999  999999999999999999999999999999999999864

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=99.44  E-value=5.2e-13  Score=115.51  Aligned_cols=127  Identities=21%  Similarity=0.271  Sum_probs=95.3

Q ss_pred             CcccchhhHHHHHhCCCC--EEEEeccCCCCCceEEeCCCC--CCC---cchhh--ccCCeeeEEeecCeEEEEEecCCC
Q 020431          181 ANVLHPRTIIPVMRYDIP--IVIRNIFNLSVPGIMICRPPV--DEN---EDEQI--IDSPVKGFATIDNLALVNVEGTGM  251 (326)
Q Consensus       181 ~~v~~~~a~~~a~~~~I~--v~I~n~~~~~~~GT~I~~~~~--~~~---~~~~~--~~~~v~~I~~~~~ia~IsivG~~~  251 (326)
                      ..++-.+.+.++.++||+  +...|.++|+..+|.|+-.-.  +..   ...+.  ....++.+...+++++|+++|.+|
T Consensus        26 ~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm  105 (178)
T 2dtj_A           26 KPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGM  105 (178)
T ss_dssp             STTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECC
T ss_pred             CccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCc
Confidence            345556678888999965  555565555444566641100  000   00000  112356789999999999999999


Q ss_pred             CCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhc
Q 020431          252 AGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN  309 (326)
Q Consensus       252 ~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~  309 (326)
                      ++.||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|++.||++|+.+..
T Consensus       106 ~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV~~~d~~~Av~~Lh~~F~l~~~  161 (178)
T 2dtj_A          106 KSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQFQLGGE  161 (178)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHHTCCSS
T ss_pred             ccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999998  7899999999999999999999999986543

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=99.43  E-value=2.2e-13  Score=118.32  Aligned_cols=125  Identities=21%  Similarity=0.228  Sum_probs=94.7

Q ss_pred             CCcccchhhHHHHHhCCCCEEEEeccCCCC-Cc-eEEe---CCCCCCCcc---hhhc--cCCeeeEEeecCeEEEEEecC
Q 020431          180 GANVLHPRTIIPVMRYDIPIVIRNIFNLSV-PG-IMIC---RPPVDENED---EQII--DSPVKGFATIDNLALVNVEGT  249 (326)
Q Consensus       180 g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~-~G-T~I~---~~~~~~~~~---~~~~--~~~v~~I~~~~~ia~IsivG~  249 (326)
                      +..++..+.+..+.++||++....+..++. .| +.|+   +... ....   .+..  .-.+..+.+.+++++|+++|.
T Consensus        26 ~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~-~~~a~~~L~~~~~el~~~~v~~~~~va~VsvVG~  104 (181)
T 3s1t_A           26 DIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV-GPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGA  104 (181)
T ss_dssp             SSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT-HHHHHHHHHHTHHHHCCSEEEEESCEEEEEEEEE
T ss_pred             CCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH-HHHHHHHHHHHHHhcCcceEEEeCCEEEEEEEec
Confidence            445566677888899999977776544331 23 2332   2111 0000   0000  113567889999999999999


Q ss_pred             CCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHH
Q 020431          250 GMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (326)
Q Consensus       250 ~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (326)
                      +|++.||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|++.||+.|+..
T Consensus       105 gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~Is~vV~~~d~~~Av~aLH~~f~l~  160 (181)
T 3s1t_A          105 GMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAFGLG  160 (181)
T ss_dssp             CCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHHTCC
T ss_pred             ccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEeHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999  78999999999999999999999999764

>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}

Probab=99.42  E-value=1e-13  Score=136.41  Aligned_cols=167  Identities=13%  Similarity=0.119  Sum_probs=119.6

Q ss_pred             hhHHhHhh-ccchHHHHHHHHHHHHHcCCceEEEcccce--eeccCCCCC---C-CCCCchhhHHHHHHHhhcCCCcEEE
Q 020431           33 ESFTDFVV-GHGELWSAQMLAAVVRKNGIDCKWMDTREV--LIVNPTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTII  105 (326)
Q Consensus        33 ~~~~d~i~-~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~--~~~~~~~~g---~-~~~~~~~~~~~i~~~l~~~~~~ipV  105 (326)
                      ++..+.+. +.| .++.. +++.|.++|++|+++.+..+  ...++..+|   + ..++.    +.|+.+++  .|.|||
T Consensus       126 ~~~l~vv~~~~g-~vn~~-Lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpV  197 (467)
T 3s6k_A          126 PHALAIVRKVFQ-ASNLK-LVEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNL----APIEASLQ--AGSIPV  197 (467)
T ss_dssp             HHHHHHHHHHHH-HHHHH-HHHHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCC----HHHHTHHH--HTCBCC
T ss_pred             HHHHHHHHHHHH-HHHHH-HHHHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcH----HHHHHHHH--CCCEEE
Confidence            34444443 256 55554 45699999999999998544  111222233   2 34667    88999998  899999


Q ss_pred             ecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHH-HHHHHhhc--CCc
Q 020431          106 ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYF--GAN  182 (326)
Q Consensus       106 v~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~-e~~~l~~~--g~~  182 (326)
                      +++. +.+..|+..++   ++|++|+.+|.+|+|++++|+|||||||+.      +++++++++.. |+.++...  +.+
T Consensus       198 i~pv-g~~~~G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tG  267 (467)
T 3s6k_A          198 ITSL-GETPSGQILNV---NADFAANELVQELQPYKIIFLTGTGGLLDA------EGKLIDSINLSTEYDHLMQQPWING  267 (467)
T ss_dssp             CCSC-CCCSSSCCCBC---CHHHHHHHHHHHHCCSSCCCCCSSCSCCCS------SCCCCCCCCTTTTTHHHHTSSSCCS
T ss_pred             EECc-eECCCCcEEec---CHHHHHHHHHHhcCCCEEEEEecccceeCC------CCCCccccChHHHHHHHHhcCCCCC
Confidence            9953 44667888776   489999999999999999999999999985      46788999885 77777653  357


Q ss_pred             ccchh--hHHHHHhCCCCEEEEeccCC----------CCCceEEeCC
Q 020431          183 VLHPR--TIIPVMRYDIPIVIRNIFNL----------SVPGIMICRP  217 (326)
Q Consensus       183 v~~~~--a~~~a~~~~I~v~I~n~~~~----------~~~GT~I~~~  217 (326)
                      +|.|+  ++..+.+.+.++.+.++..+          +..||.|.+.
T Consensus       268 GM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~  314 (467)
T 3s6k_A          268 GMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG  314 (467)
T ss_dssp             HHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred             chHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence            88885  66666664334666665433          3569999764

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=99.35  E-value=1.1e-12  Score=112.23  Aligned_cols=127  Identities=18%  Similarity=0.211  Sum_probs=90.0

Q ss_pred             cccchhhHHHHHhCCCCEEEEeccCCC-CCc-eEE--e-CCCCCCC--cchh---hccCCeeeEEeecCeEEEEEecCCC
Q 020431          182 NVLHPRTIIPVMRYDIPIVIRNIFNLS-VPG-IMI--C-RPPVDEN--EDEQ---IIDSPVKGFATIDNLALVNVEGTGM  251 (326)
Q Consensus       182 ~v~~~~a~~~a~~~~I~v~I~n~~~~~-~~G-T~I--~-~~~~~~~--~~~~---~~~~~v~~I~~~~~ia~IsivG~~~  251 (326)
                      .++-.+.+..+.++||++...++.... ..| +.|  . ++.+...  ..+.   .+.. + .+.+.+++++|+++|.+|
T Consensus        28 ~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~-~-~v~~~~~~a~vsvVG~gm  105 (167)
T 2dt9_A           28 PGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIG-G-EAILRPDIAKVSIVGVGL  105 (167)
T ss_dssp             TTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHC-C-EEEEECSEEEEEEEESSG
T ss_pred             CCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhC-C-cEEEeCCEEEEEEECCCc
Confidence            444556778888899987777655321 123 222  2 2111000  0000   0112 3 788899999999999999


Q ss_pred             CCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcCCC
Q 020431          252 AGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGR  312 (326)
Q Consensus       252 ~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~  312 (326)
                      ++.||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|++.||+.|+....+.+
T Consensus       106 ~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~vv~~~d~~~Av~~Lh~~f~~~~~~~~  164 (167)
T 2dt9_A          106 ASTPEVPAKMFQAVASTGANIEMIA--TSEVRISVIIPAEYAEAALRAVHQAFELDKAHHH  164 (167)
T ss_dssp             GGSTHHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTC-------
T ss_pred             ccCcCHHHHHHHHHHHCCCCEEEEE--ccCCEEEEEEeHHHHHHHHHHHHHHHcCCccccc
Confidence            9999999999999999999999998  7899999999999999999999999987655443

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=99.32  E-value=2e-12  Score=128.76  Aligned_cols=123  Identities=18%  Similarity=0.196  Sum_probs=95.0

Q ss_pred             CcccchhhHHHHHhCCCCEEEEeccCCCCCceEEe-CCCC-CC----Ccchh---hccCCeeeEEeecCeEEEEEecCCC
Q 020431          181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC-RPPV-DE----NEDEQ---IIDSPVKGFATIDNLALVNVEGTGM  251 (326)
Q Consensus       181 ~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~-~~~~-~~----~~~~~---~~~~~v~~I~~~~~ia~IsivG~~~  251 (326)
                      ..++..+.+..+.++||++.+..+..   ..-.+. +... ..    ....+   .+-..+..+.+.+|+|+|++||. |
T Consensus       354 ~~g~~~~if~~la~~~I~vd~I~sse---~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~-m  429 (510)
T 2cdq_A          354 QVGFLAKVFSIFEELGISVDVVATSE---VSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGN-V  429 (510)
T ss_dssp             CTTHHHHHHHHHHHTTCCEEEEEEET---TEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEEC-G
T ss_pred             cccHHHHHHHHHHHcCCcEEEEEeCC---CeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEE-C
Confidence            34555678889999999988776542   222222 2111 00    00111   11123567889999999999999 9


Q ss_pred             CCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHH
Q 020431          252 AGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (326)
Q Consensus       252 ~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (326)
                      ++.||+++++|++|+++||||.||+|++|+.+|||+|+++|.++|+++||+.|+..
T Consensus       430 ~~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH~~f~~~  485 (510)
T 2cdq_A          430 QHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFFES  485 (510)
T ss_dssp             GGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHHHHSS
T ss_pred             CCChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999863

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=99.25  E-value=1.2e-11  Score=105.66  Aligned_cols=123  Identities=21%  Similarity=0.139  Sum_probs=90.8

Q ss_pred             CcccchhhHHHHHhCCCCEEEEeccCCCCCc-eEE--e-CCCCCC--Ccchhh--ccCCeeeEEeecCeEEEEEecCCCC
Q 020431          181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG-IMI--C-RPPVDE--NEDEQI--IDSPVKGFATIDNLALVNVEGTGMA  252 (326)
Q Consensus       181 ~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~G-T~I--~-~~~~~~--~~~~~~--~~~~v~~I~~~~~ia~IsivG~~~~  252 (326)
                      ..++-.+.+..+.++||.+...++.... .| +.|  . +..+..  ....+.  ..-.++.++..+++++|+++|.+|.
T Consensus        36 ~~G~~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~  114 (167)
T 2re1_A           36 KPGVAYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMR  114 (167)
T ss_dssp             CTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCT
T ss_pred             CcCHHHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcC
Confidence            3455556788888999987776654321 13 222  1 211100  000110  1113567899999999999999999


Q ss_pred             CcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       253 ~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      +.||+++++|++|+++||||.|++  +|+.+++++|+++|.+++++.||++|+.
T Consensus       115 ~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv~~~d~~~av~~Lh~~f~l  166 (167)
T 2re1_A          115 SHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLIDEKYMELATRVLHKAFNL  166 (167)
T ss_dssp             TCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTTC
T ss_pred             CCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEEeHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999998  7999999999999999999999999863

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=99.24  E-value=1.2e-11  Score=104.76  Aligned_cols=87  Identities=15%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             ccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEcccc-HHHHHHHHHHHHHH
Q 020431          228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKE-VKAVAEALESKFRE  306 (326)
Q Consensus       228 ~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d-~~~av~~Lh~~f~~  306 (326)
                      +.+.+++|+.++|+++|++.|.+|.+.||+.+++|+.|+++||+|+||+|  |+.+|||++++.+ +.++++.|++    
T Consensus         5 ~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~--s~~~Isf~v~~~~~~~~il~~l~~----   78 (157)
T 3mah_A            5 EKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT--SEVGVSLTIDNDKNLPDIVRALSD----   78 (157)
T ss_dssp             --CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC--CSSEEEEEESCCTTHHHHHHHHTT----
T ss_pred             CCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe--cCCEEEEEECChHHHHHHHHHHhc----
Confidence            45679999999999999999999999999999999999999999999994  6889999999987 5555555543    


Q ss_pred             HhcCCCCcceEEEcCeeecC
Q 020431          307 ALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       307 ~~~~~~~~~v~~~~~~~~~~  326 (326)
                            +..++++.++|+|+
T Consensus        79 ------~~~v~~~~~~a~vs   92 (157)
T 3mah_A           79 ------IGDVTVDKDMVIIC   92 (157)
T ss_dssp             ------TEEEEEEEEEEEEE
T ss_pred             ------cCeEEEeCCeEEEE
Confidence                  57899999998873

>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}

Probab=99.22  E-value=6.4e-11  Score=111.76  Aligned_cols=119  Identities=15%  Similarity=0.167  Sum_probs=87.7

Q ss_pred             HHHHHHhhcCCCcEEEecCc--ccc-----CCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCC
Q 020431           90 KRLEKWFSQSPSNTIIATGF--IAS-----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gf--i~~-----~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a  162 (326)
                      +.|..+++  .+.|||..|-  ++.     +..|...+   +++|.+|+.+|..++|+.++|+|||||||+.+|+  |++
T Consensus       194 ~~I~~L~~--~g~Ivi~~ggggipv~~~~~~~~G~~~v---id~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~  266 (332)
T 4axs_A          194 DAIKQNVN--NGCVCIVGGGGGIPTIIQDNQYIGVDGV---IDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQ  266 (332)
T ss_dssp             HHHHHHHH--TTCEEECCGGGCEEEEESSSCEEECSSC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTC
T ss_pred             HHHHHhhc--CCeEEEecccCCCCccccCCcccCceee---echHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cch
Confidence            67888887  7888876542  111     11233333   4589999999999999999999999999998886  789


Q ss_pred             eEEeeecHHHHHHHhhc---CCcccchh--hHHHHHhCCC--CEEEEeccC-----CCCCceEEe
Q 020431          163 VILRTLSYQEAWEMSYF---GANVLHPR--TIIPVMRYDI--PIVIRNIFN-----LSVPGIMIC  215 (326)
Q Consensus       163 ~~i~~ls~~e~~~l~~~---g~~v~~~~--a~~~a~~~~I--~v~I~n~~~-----~~~~GT~I~  215 (326)
                      ++++++|.+|+.++...   +.+.|-||  |+..+.+.+.  .+.|.+..+     ....||.|.
T Consensus       267 ~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g~~GT~Iv  331 (332)
T 4axs_A          267 KALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKII  331 (332)
T ss_dssp             EECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTTSSSEEEB
T ss_pred             hhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCCCCCcEEe
Confidence            99999999999999764   45779996  6666666654  566655321     113599885

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=99.21  E-value=3.8e-11  Score=102.61  Aligned_cols=90  Identities=24%  Similarity=0.304  Sum_probs=80.2

Q ss_pred             CCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC-----ccEEEEEEccccHHHHHHHHHHHH
Q 020431          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-----EHSVCFAVPEKEVKAVAEALESKF  304 (326)
Q Consensus       230 ~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s-----e~sIs~~V~~~d~~~av~~Lh~~f  304 (326)
                      ..+++|+..+|+++|++.|  +.+.||+++++|+.|+++||+|+||+|+.+     +.+++|+|++++.+++.+.|++ +
T Consensus         5 ~~v~gIa~~~~~a~Itv~g--~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~-~   81 (167)
T 2dt9_A            5 KAVTGVALDLDHAQIGLIG--IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEP-V   81 (167)
T ss_dssp             CCEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHH-H
T ss_pred             CceeEEEEeCCEEEEEEec--CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHH-H
Confidence            4699999999999999998  688899999999999999999999999876     7899999999999999999987 5


Q ss_pred             HHHhcCCCCcceEEEcCeeecC
Q 020431          305 REALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       305 ~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      ..+++   + ++.++.++++++
T Consensus        82 ~~~~~---~-~v~~~~~~a~vs   99 (167)
T 2dt9_A           82 LAEIG---G-EAILRPDIAKVS   99 (167)
T ss_dssp             HHHHC---C-EEEEECSEEEEE
T ss_pred             HHHhC---C-cEEEeCCEEEEE
Confidence            55664   4 899999998863

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=99.21  E-value=4.1e-11  Score=103.88  Aligned_cols=93  Identities=27%  Similarity=0.373  Sum_probs=81.1

Q ss_pred             ccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCc-----cEEEEEEccccHHHHHHHHHH
Q 020431          228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       228 ~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se-----~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      +.+.+++|+.++|+++|+|.|  |.+.||+++++|+.|+++||+|+||+|+.|+     .+++|++++++.+++.+.|++
T Consensus         3 e~~~V~gIa~~~~~~~Iti~~--~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~   80 (181)
T 3s1t_A            3 EDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDS   80 (181)
T ss_dssp             -CCEEEEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHH
T ss_pred             CCCcEEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHH
Confidence            346799999999999999996  8999999999999999999999999997765     589999999999999888877


Q ss_pred             HHHHHhcCCCCcceEEEcCeeecC
Q 020431          303 KFREALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       303 ~f~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                       +..++   .+++++++.++|+|+
T Consensus        81 -~~~el---~~~~v~~~~~va~Vs  100 (181)
T 3s1t_A           81 -LRNEI---GFSQLLYDDHIGKVS  100 (181)
T ss_dssp             -THHHH---CCSEEEEESCEEEEE
T ss_pred             -HHHhc---CcceEEEeCCEEEEE
Confidence             44455   467899999999873

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=99.20  E-value=1.1e-11  Score=121.72  Aligned_cols=116  Identities=21%  Similarity=0.312  Sum_probs=86.3

Q ss_pred             chhhHHHHHhCCCCEEEEeccCCCCCceEEe-CCCC---C-CCcchh---hccCCeeeEEeecCeEEEEEecCCCCCccc
Q 020431          185 HPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC-RPPV---D-ENEDEQ---IIDSPVKGFATIDNLALVNVEGTGMAGVPG  256 (326)
Q Consensus       185 ~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~-~~~~---~-~~~~~~---~~~~~v~~I~~~~~ia~IsivG~~~~~~~~  256 (326)
                      ..+.+..+.++||++.+..+.  + ..-.+. +...   . .....+   .+-..+..+.+.+|+++|++||.+|++.||
T Consensus       325 ~~~if~~l~~~~i~vd~i~ss--~-~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~v~~~~~~a~vsvVG~gm~~~~g  401 (449)
T 2j0w_A          325 LAEVFGILARHNISVDLITTS--E-VSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACG  401 (449)
T ss_dssp             HHHHTTTTTTTTCCCSEEEEE--T-TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCEEEEEEEEEEEEEESSCTTSSS
T ss_pred             HHHHHHHHHHcCCCEEEEEeC--C-CeEEEEEeccccchhhHHHHHHHHHHHhccCCeEEEeCCeEEEEEECCCcccccc
Confidence            345666777899987666543  1 222222 2211   0 000000   011114568889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHH
Q 020431          257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       257 i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      +.+++|++|++  |||.||+|++|+.+|||+|+++|.++|++.||++|+
T Consensus       402 v~~~~f~aL~~--ini~mIsqg~Se~~Is~vV~~~d~~~Av~~lh~~f~  448 (449)
T 2j0w_A          402 VGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLF  448 (449)
T ss_dssp             HHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHHHHh
Confidence            99999999966  999999999999999999999999999999999997

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=99.19  E-value=2.1e-11  Score=123.80  Aligned_cols=74  Identities=30%  Similarity=0.416  Sum_probs=70.4

Q ss_pred             eeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHh
Q 020431          233 KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (326)
Q Consensus       233 ~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~  308 (326)
                      ..+.+++++|+|++||.||+++||+++|+|++|+++|||+.||+  +||.+|||+|+++|.++|+++||+.|+...
T Consensus       519 ~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tSEi~Is~vV~~~~~~~Av~alh~~F~l~~  592 (600)
T 3l76_A          519 AAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSEIKISCVVPQDRGVDALKAAHSAFNLAG  592 (600)
T ss_dssp             CEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTTTTS
T ss_pred             ceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cCCceEEEEEeHHHHHHHHHHHHHHhCCCC
Confidence            46889999999999999999999999999999999999999999  899999999999999999999999997643

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=99.14  E-value=5.7e-11  Score=115.87  Aligned_cols=123  Identities=22%  Similarity=0.253  Sum_probs=91.3

Q ss_pred             ccchhhHHHHHhCCCCEEEEeccCCC-CCc-eEEe---CCCCCC--Ccchhhc--cCCeeeEEeecCeEEEEEecCCCCC
Q 020431          183 VLHPRTIIPVMRYDIPIVIRNIFNLS-VPG-IMIC---RPPVDE--NEDEQII--DSPVKGFATIDNLALVNVEGTGMAG  253 (326)
Q Consensus       183 v~~~~a~~~a~~~~I~v~I~n~~~~~-~~G-T~I~---~~~~~~--~~~~~~~--~~~v~~I~~~~~ia~IsivG~~~~~  253 (326)
                      ++-.+.+..+.++||.+........+ ..| +.|+   +..+..  ....+..  .-.+..+.+.+|+++|+++|.+|++
T Consensus       277 g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~~  356 (421)
T 3ab4_A          277 GEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKS  356 (421)
T ss_dssp             THHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGTS
T ss_pred             cHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCccc
Confidence            33446788889999998877542211 023 2332   221100  0001111  1124578889999999999999999


Q ss_pred             cccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHH
Q 020431          254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (326)
Q Consensus       254 ~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (326)
                      +||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|++.||+.|+..
T Consensus       357 ~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~vV~~~d~~~Av~~Lh~~f~~~  408 (421)
T 3ab4_A          357 HPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQFQLG  408 (421)
T ss_dssp             CTTHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHTTCC
T ss_pred             CccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998  78999999999999999999999999864

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=99.14  E-value=1.2e-10  Score=102.27  Aligned_cols=92  Identities=27%  Similarity=0.376  Sum_probs=79.8

Q ss_pred             ccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCc-----cEEEEEEccccHHHHHHHHHH
Q 020431          228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       228 ~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se-----~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      +++.+++|+..+|+++|+|.|  |.+.||+++++|+.|+++||||+||+|+.|+     ..++|++++++..++...|.+
T Consensus        22 E~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~   99 (200)
T 4go7_X           22 EDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDS   99 (200)
T ss_dssp             CSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHT
T ss_pred             ccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHH
Confidence            456799999999999999987  8999999999999999999999999998764     468999999999999988866


Q ss_pred             HHHHHhcCCCCcceEEEcCeeec
Q 020431          303 KFREALNAGRLSQVCLSFWLCDY  325 (326)
Q Consensus       303 ~f~~~~~~~~~~~v~~~~~~~~~  325 (326)
                       +..++.   ..++.++.++|.|
T Consensus       100 -~~~~~~---~~~v~~~~~iakV  118 (200)
T 4go7_X          100 -LRNEIG---FSQLLYDDHIGKV  118 (200)
T ss_dssp             -THHHHC---CSEEEEECCEEEE
T ss_pred             -HHhhhc---eeeEEEecCeeee
Confidence             444443   5679999999876

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=99.08  E-value=3.2e-10  Score=96.81  Aligned_cols=92  Identities=29%  Similarity=0.401  Sum_probs=77.0

Q ss_pred             cCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC---ccEEEEEEccccHHHHHHHHHHHHH
Q 020431          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       229 ~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s---e~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      ...+++|+.++|+++|++.|  |.+.||+++++|+.|+++||+|+||+|+.+   +.+++|+|++.+.+++.+.|++ +.
T Consensus        13 ~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~~~a~~~l~~-~~   89 (167)
T 2re1_A           13 RAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSE-RQ   89 (167)
T ss_dssp             --CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGHHHHHHHHHH-SS
T ss_pred             CCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHHHHHHHHHHH-HH
Confidence            45699999999999999998  889999999999999999999999999766   7899999999999999888876 32


Q ss_pred             HHhcCCCCcceEEEcCeeecC
Q 020431          306 EALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       306 ~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      .++   .+..+.++.++++++
T Consensus        90 ~~l---~~~~i~~~~~~a~vs  107 (167)
T 2re1_A           90 DSI---GAASIDGDDTVCKVS  107 (167)
T ss_dssp             TTT---TCSEEEEESSEEEEE
T ss_pred             HHc---CCceEEecCCEEEEE
Confidence            333   246789999988763

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=98.93  E-value=1.8e-09  Score=93.20  Aligned_cols=91  Identities=25%  Similarity=0.333  Sum_probs=77.7

Q ss_pred             CCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC-----ccEEEEEEccccHHHHHHHHHHHH
Q 020431          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-----EHSVCFAVPEKEVKAVAEALESKF  304 (326)
Q Consensus       230 ~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s-----e~sIs~~V~~~d~~~av~~Lh~~f  304 (326)
                      ..+++|+.++|+++|+|.+  +.+.||+++++|+.|+++||+|+||+|+++     +.+|+|+++.++.+++.+.|.+ +
T Consensus         4 ~~V~gIa~~~~~~~Itv~~--~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~-~   80 (178)
T 2dtj_A            4 AVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKK-L   80 (178)
T ss_dssp             CEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHT-T
T ss_pred             CcEEEEEecCCEEEEEEec--CCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHH-H
Confidence            4699999999999999986  578899999999999999999999999855     7889999999999988888876 3


Q ss_pred             HHHhcCCCCcceEEEcCeeecC
Q 020431          305 REALNAGRLSQVCLSFWLCDYT  326 (326)
Q Consensus       305 ~~~~~~~~~~~v~~~~~~~~~~  326 (326)
                      ..++.   +.+++++.++|+|+
T Consensus        81 ~~~~~---~~~v~~~~~~a~Vs   99 (178)
T 2dtj_A           81 QVQGN---WTNVLYDDQVGKVS   99 (178)
T ss_dssp             TTTTT---CSEEEEESCEEEEE
T ss_pred             HHhcC---CCeEEEeCCeEEEE
Confidence            33332   46799999998873

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=97.99  E-value=1.3e-05  Score=65.93  Aligned_cols=109  Identities=16%  Similarity=0.170  Sum_probs=72.0

Q ss_pred             hhhHHHHHhCCCCEEEEeccCCCCCc-eEEeCCCCCCCcchhhccCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHH
Q 020431          186 PRTIIPVMRYDIPIVIRNIFNLSVPG-IMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGA  264 (326)
Q Consensus       186 ~~a~~~a~~~~I~v~I~n~~~~~~~G-T~I~~~~~~~~~~~~~~~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~  264 (326)
                      .+.+..+.+.|+.+...........| ..+... + .....+.    ++...  -.....+++|-+|.++||+++++|++
T Consensus        21 ~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~-d-~~~a~~~----L~~~G--~~v~~~svv~v~~~d~pGvla~i~~~   92 (144)
T 2f06_A           21 TEVTEVLAKENINLSALCIAENADFGILRGIVS-D-PDKAYKA----LKDNH--FAVNITDVVGISCPNVPGALAKVLGF   92 (144)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES-C-HHHHHHH----HHHTT--CCEEEEEEEEEEEESSTTHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC-C-HHHHHHH----HHHcC--CeEeeeeEEEEEeCCCCcHHHHHHHH
Confidence            34567777889887665444322235 334421 1 0000110    11000  11233478888899999999999999


Q ss_pred             HHhCCCcE-EEEEecCCccEEEEEEccccHHHHHHHHHHH
Q 020431          265 VKDVGANV-IMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (326)
Q Consensus       265 L~~~~I~v-~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~  303 (326)
                      |+++|||| .+++.. ++..++++++.+|.+++++.||+.
T Consensus        93 L~~~~InI~~~~~~~-~~~~~~~~i~~~d~~~A~~~L~~~  131 (144)
T 2f06_A           93 LSAEGVFIEYMYSFA-NNNVANVVIRPSNMDKCIEVLKEK  131 (144)
T ss_dssp             HHHTTCCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHT
T ss_pred             HHHCCCCEEEEEEEc-cCCcEEEEEEeCCHHHHHHHHHHc
Confidence            99999999 556632 678899999999999999999984

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=97.80  E-value=1.2e-05  Score=78.65  Aligned_cols=91  Identities=11%  Similarity=0.200  Sum_probs=76.8

Q ss_pred             CeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcC
Q 020431          231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNA  310 (326)
Q Consensus       231 ~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~  310 (326)
                      .+++|+..+|+++|++.|.+|.+.+|+.+++|+.|++++|+|+||+|  ++.++||+|++++..+.++.+.+++..++. 
T Consensus       288 ~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~--~~~~is~~V~~~d~~~~~~~~~~el~~~~~-  364 (446)
T 3tvi_A          288 TITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPS--GVDSVSLVIEDCKLDGKCDKIIEEIKKQCN-  364 (446)
T ss_dssp             CCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCE--ETTEEEEEEEHHHHTTTHHHHHHHHHHHSC-
T ss_pred             ceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEec--CCCEEEEEEecchHHHHHHHHHHHHHHhcC-
Confidence            68999999999999999999999999999999999999999999985  588999999999876544444444544443 


Q ss_pred             CCCcceEEEcCeeecC
Q 020431          311 GRLSQVCLSFWLCDYT  326 (326)
Q Consensus       311 ~~~~~v~~~~~~~~~~  326 (326)
                        ..+++++.++|+|+
T Consensus       365 --~~~v~v~~~vA~VS  378 (446)
T 3tvi_A          365 --PDSIEIHPNMALVA  378 (446)
T ss_dssp             --CSEEEEEEEEEEEE
T ss_pred             --CCcEEEeCCeEEEE
Confidence              45799999999874

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=96.54  E-value=0.0077  Score=49.09  Aligned_cols=50  Identities=10%  Similarity=0.108  Sum_probs=39.9

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCcc-E-EEEEEccccHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSEH-S-VCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~-s-Is~~V~~~d~~~av~~Lh~  302 (326)
                      +.+.||.++++|+.|+++||||++|+|+.+.. . ++|.  ..+.+++.+.|++
T Consensus        13 v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~~d~~~a~~~L~~   64 (144)
T 2f06_A           13 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--VSDPDKAYKALKD   64 (144)
T ss_dssp             ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--ESCHHHHHHHHHH
T ss_pred             ecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--eCCHHHHHHHHHH
Confidence            56789999999999999999999999874432 4 4465  4677888888875

>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8

Probab=95.79  E-value=0.034  Score=45.22  Aligned_cols=66  Identities=11%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             EEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHH
Q 020431          235 FATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (326)
Q Consensus       235 I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~  303 (326)
                      +....+...|+|.|..-.+..|+++.+.+.|+++||++..||  +=.+.. ++|++++.++++++|.+.
T Consensus        56 ~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~iS--ty~tD~-IlVp~~~~~~Ai~aL~~~  121 (134)
T 1zhv_A           56 VRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVS--TFDGDH-LLVRSNDLEKTADLLANA  121 (134)
T ss_dssp             SEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEE--CSSCEE-EEEEGGGHHHHHHHHHHT
T ss_pred             CccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEE--eccccE-EEEeHHHHHHHHHHHHHc
Confidence            466778899999988777889999999999999999999998  434444 678999999999999885

>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9

Probab=95.27  E-value=0.051  Score=44.10  Aligned_cols=64  Identities=14%  Similarity=0.169  Sum_probs=52.8

Q ss_pred             EeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHH
Q 020431          236 ATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       236 ~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      ....+...|++.|..-.+..|+.+.+-+.|+++||.+..||  +=.+.- ++|++++.+++++.|.+
T Consensus        66 ~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iS--ty~tDh-IlVp~~~~~~A~~~L~~  129 (133)
T 1zvp_A           66 ESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIA--GYYHDH-IFVQKEKAQQALQALGE  129 (133)
T ss_dssp             CCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEE--CSSCEE-EEEEGGGHHHHHHHHTT
T ss_pred             ccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEE--eccccE-EEEehhHHHHHHHHHHH
Confidence            45568889999987777899999999999999999999998  434444 67899999999999865

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=92.68  E-value=0.59  Score=34.24  Aligned_cols=59  Identities=20%  Similarity=0.316  Sum_probs=43.2

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC--ccEEEEE--Ecc-ccHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFA--VPE-KEVKAVAEALES  302 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s--e~sIs~~--V~~-~d~~~av~~Lh~  302 (326)
                      ...|++.|.   +.||+++++.+.|+++|+||.-++|...  ...+.+.  ++. .+++.+.+.|.+
T Consensus         5 ~~~l~v~~~---DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~   68 (91)
T 1zpv_A            5 KAIITVVGK---DKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEES---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred             eEEEEEEEC---CCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHH
Confidence            356888875   6899999999999999999999987653  2233333  444 467777777765

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=90.66  E-value=0.21  Score=41.89  Aligned_cols=52  Identities=12%  Similarity=0.274  Sum_probs=37.7

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCc----cEEEEEEccc--cHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se----~sIs~~V~~~--d~~~av~~Lh~  302 (326)
                      ..+.||+++++...|+++|+||..++-+.++    ..+.+.++..  .++++.+.|++
T Consensus        10 v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~K   67 (164)
T 2f1f_A           10 LENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHK   67 (164)
T ss_dssp             EECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             EeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcC
Confidence            3478999999999999999999887765443    4466677733  45555555555

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=90.51  E-value=0.19  Score=42.21  Aligned_cols=52  Identities=19%  Similarity=0.284  Sum_probs=37.4

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCc----cEEEEEEccc--cHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se----~sIs~~V~~~--d~~~av~~Lh~  302 (326)
                      ..+.||+++++...|+++|+||..++-+.++    ..+.+.++..  .++++.+.|++
T Consensus        11 veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~K   68 (165)
T 2pc6_A           11 MENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNK   68 (165)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred             EeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcC
Confidence            3478999999999999999999887765443    4466677633  44555555554

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=88.59  E-value=1.2  Score=37.54  Aligned_cols=60  Identities=20%  Similarity=0.301  Sum_probs=42.9

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC--ccEEEEEEccccHHHHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPEKEVKAVAEALESKFR  305 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s--e~sIs~~V~~~d~~~av~~Lh~~f~  305 (326)
                      ...|++.|.   ++||+++++.+.|+++|+||.-++|...  ...+.+.+....  .....|.+.|.
T Consensus         6 ~~~itv~~~---DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~--~~~~~l~~~L~   67 (192)
T 1u8s_A            6 HLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP--SNITRVETTLP   67 (192)
T ss_dssp             EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH--HHHHHHHHHHH
T ss_pred             EEEEEEEcC---CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC--CCHHHHHHHHH
Confidence            467899985   5899999999999999999999988653  344455554332  24455555544

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=87.93  E-value=2.1  Score=30.73  Aligned_cols=57  Identities=18%  Similarity=0.304  Sum_probs=37.7

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCc--cEEEEEEccc---cHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE--HSVCFAVPEK---EVKAVAEALE  301 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se--~sIs~~V~~~---d~~~av~~Lh  301 (326)
                      ..|.+.+   .+.||+++++.+.|++.|+||..+.+....  ..+.+.++-.   ++.++++.|.
T Consensus         6 ~~l~v~~---~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~   67 (88)
T 2ko1_A            6 AGIRIVG---EDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEE---ECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             EEEEEEE---ECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHh
Confidence            3455654   478999999999999999999998876432  2344444433   3444444443

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=86.07  E-value=1.1  Score=38.54  Aligned_cols=52  Identities=15%  Similarity=0.241  Sum_probs=37.2

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCc----cEEEEEEccc--cHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se----~sIs~~V~~~--d~~~av~~Lh~  302 (326)
                      +.+.||+++|+...|++.|+||..++-+.++    ..+.++|+..  .++++.+.|++
T Consensus        36 VeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~K   93 (193)
T 2fgc_A           36 VHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYK   93 (193)
T ss_dssp             EECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTT
T ss_pred             ECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence            4578999999999999999999988765332    3466677643  35555555544

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=85.11  E-value=2.6  Score=35.82  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCC
Q 020431          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS  280 (326)
Q Consensus       240 ~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~s  280 (326)
                      ...+|+|.|.   ++||+++++.+.|+++|+||.-+.|.+.
T Consensus        92 ~~~iltv~g~---DrpGiva~Vt~~La~~g~nI~~~~~~t~  129 (195)
T 2nyi_A           92 REYELYVEGP---DSEGIVEAVTAVLAKKGANIVELETETL  129 (195)
T ss_dssp             EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cEEEEEEEeC---CCcCHHHHHHHHHHHcCCCEEEceeeec
Confidence            4578999985   5899999999999999999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	326
d2j0wa1	292	c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli	5e-41
d2cdqa1	304	c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar	1e-37
d2hmfa1	302	c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja	3e-35
d2hmfa3	100	d.58.18.10 (A:304-403) Aspartokinase {Methanococcu	2e-19
d2hmfa2	67	d.58.18.10 (A:404-470) Aspartokinase {Methanococcu	6e-16
d2cdqa2	91	d.58.18.10 (A:329-419) Aspartokinase {Thale cress	8e-16
d2j0wa2	91	d.58.18.10 (A:295-385) Aspartokinase {Escherichia	1e-15
d2j0wa3	64	d.58.18.10 (A:386-449) Aspartokinase {Escherichia	1e-13
d2cdqa3	75	d.58.18.10 (A:420-494) Aspartokinase {Thale cress	6e-12
d2a1fa1	236	c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi	1e-10
d2ij9a1	219	c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog	1e-09
d1ybda1	236	c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri	5e-08
d2brxa1	225	c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc	2e-05
d1z9da1	238	c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc	3e-05

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score =  142 bits (359), Expect = 5e-41
 Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 6/194 (3%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR 91
           + + TD +V HGEL S  +   ++R+  +  +W D R+V+  N           + +E  
Sbjct: 105 SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELA 164

Query: 92  LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
             +   +     +I  GFI S      TTL R GSD++AA++   L A +V IWTDV G+
Sbjct: 165 ALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGI 224

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
           Y+ DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G
Sbjct: 225 YTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGG 284

Query: 212 IMICRPPVDENEDE 225
            ++C      N+ E
Sbjct: 285 TLVC------NKTE 292

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  134 bits (338), Expect = 1e-37
 Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 3/183 (1%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV---NPTSSNQVDPDFSESEKRLE 93
           D++V  GE  S ++ AA +   G+  +  D  E+  +   + T+ + ++  +    KRL 
Sbjct: 117 DYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLY 176

Query: 94  KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
             +   P+  I+             TTL R GSD +A  +G  L   ++ +W DVDGV +
Sbjct: 177 DDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLT 236

Query: 154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
            DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +N   PG +
Sbjct: 237 CDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTI 296

Query: 214 ICR 216
           I +
Sbjct: 297 ITK 299

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score =  128 bits (321), Expect = 3e-35
 Identities = 75/214 (35%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 3   QVRNYVSELSYEFIRSTYNFLSNVDS-GHATESFTDFVVGHGELWSAQMLAAVVRKNGID 61
           +++  V ++    I      L  V   G  T    D+++  GE  S+ +L+  +R  G  
Sbjct: 87  EIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEK 146

Query: 62  CKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL 121
              ++  E  I+   +         E ++RL     +      + TGFI +T +   TTL
Sbjct: 147 SIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEG--IIPVVTGFIGTTEEGYITTL 204

Query: 122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA 181
            R GSD+SAA++G  L A  + IWTDV GVY+ DPR V  A  +  LSY EA E++YFGA
Sbjct: 205 GRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGA 264

Query: 182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
            VLHPRTI P M   IPI+++N F     G +I 
Sbjct: 265 KVLHPRTIEPAMEKGIPILVKNTFEPESEGTLIT 298

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 100

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 79.9 bits (197), Expect = 2e-19
 Identities = 37/86 (43%), Positives = 53/86 (61%)

Query: 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAV 288
           DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ +   NVI+ISQ SSE ++   V
Sbjct: 3   DSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVV 62

Query: 289 PEKEVKAVAEALESKFREALNAGRLS 314
            E++V    +AL+ +F +      L+
Sbjct: 63  SEEDVDKALKALKREFGDFGKKSFLN 88

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 67

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 69.3 bits (170), Expect = 6e-16
 Identities = 27/65 (41%), Positives = 38/65 (58%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
            +++V G GM G  G A  IF AV + GAN+ MI+Q SSE ++ F + EK++      L 
Sbjct: 2   CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLH 61

Query: 302 SKFRE 306
            KF E
Sbjct: 62  EKFIE 66

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 69.4 bits (170), Expect = 8e-16
 Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEK 291
           +       N+ ++++  T M G  G    +F   +++G +V +++   SE S+   +   
Sbjct: 4   LTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPS 61

Query: 292 EVKAVAEALESKFREA 307
           ++ +     +      
Sbjct: 62  KLWSRELIQQELDHVV 77

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 69.1 bits (169), Expect = 1e-15
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPE 290
             +  A   N  L+ +    M    G    +FG +     +V +I+  +SE SV   +  
Sbjct: 4   LFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT--TSEVSVALTLDT 61

Query: 291 KEVKAVAEALESKFREALNAGRLSQVC 317
               +  + L ++         LS +C
Sbjct: 62  TGSTSTGDTLLTQSLLM----ELSALC 84

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 62.8 bits (153), Expect = 1e-13
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           LALV + G  ++   G    +FG ++    N+ MI   +S H++CF VP ++ + V + L
Sbjct: 1   LALVALIGNDLSKACGVGKEVFGVLEPF--NIRMICYGASSHNLCFLVPGEDAEQVVQKL 58

Query: 301 ESKFRE 306
            S   E
Sbjct: 59  HSNLFE 64

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 58.2 bits (141), Expect = 6e-12
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           A++++ G  +          F  +   G NV MISQ +S+ ++ F V E E +   +AL 
Sbjct: 2   AIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALH 60

Query: 302 SKFREALNAGRLS 314
             F E+ +   L 
Sbjct: 61  KSFFESGDLSELL 73

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

 Score = 58.4 bits (140), Expect = 1e-10
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 12/111 (10%)

Query: 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA 173
             +  T      +D +A + G  + A  V   T VDGVY  DP K  +A + + LSY E 
Sbjct: 129 IFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEV 188

Query: 174 WEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV---------PGIMIC 215
            +       V+          + +PI + N+               G  IC
Sbjct: 189 IDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 236

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 55.3 bits (132), Expect = 1e-09
 Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 23/175 (13%)

Query: 39  VVGHGELWSAQMLAAVVRKNGID----CKWMDTREVLIVNPTSSNQVDPDFSESEKRLEK 94
           VVG G+L  A+      R+ G               L      S             +E 
Sbjct: 38  VVGGGKL--AREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFMEA 95

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
                    ++  G                 +D +AA++   ++A      T+VDGVYSA
Sbjct: 96  EELSKLYRVVVMGGTFP-----------GHTTDATAALLAEFIKADVFINATNVDGVYSA 144

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV------MRYDIPIVIRN 203
           DP+  + AV    LS Q+  E+    +       +I +       R  I   +  
Sbjct: 145 DPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL 199

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

 Score = 50.8 bits (120), Expect = 5e-08
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE 172
                 T      +D +AA+ GA +    +   T+VDGVY+ADP+K   A    T+++ E
Sbjct: 127 VIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDE 186

Query: 173 AWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
           A         V+            + IV+  I     
Sbjct: 187 ALLK---NLKVMDATAFALCRERKLNIVVFGIAKEGS 220

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D  AA++   L+A  + + T+VDGVY+ADP+K   A  ++ +  +E  E+   G      
Sbjct: 121 DAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGS 180

Query: 187 RTII------PVMRYDIPIVIRNIFN 206
            ++I       + R  I  ++    +
Sbjct: 181 SSVIDPLAAKIIARSGIKTIVIGKED 206

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 4/182 (2%)

Query: 26  VDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF 85
             SG                 +A      V+ +           +++ +      VD   
Sbjct: 40  HVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRV 99

Query: 86  SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW 145
             +               +                     +D +AA+  A + A  + + 
Sbjct: 100 QTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMA 159

Query: 146 T-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNI 204
              VDGVY+ADP+K + AV    L++ E  +    G  ++        M  DI +V+ N+
Sbjct: 160 KNGVDGVYNADPKKDANAVKFDELTHGEVIKR---GLKIMDATASTLSMDNDIDLVVFNM 216

Query: 205 FN 206
             
Sbjct: 217 NE 218

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d2cdqa1	304	Aspartokinase {Thale cress (Arabidopsis thaliana)	100.0
d2j0wa1	292	Aspartokinase {Escherichia coli [TaxId: 562]}	100.0
d2hmfa1	302	Aspartokinase {Methanococcus jannaschii [TaxId: 21	100.0
d2brxa1	225	Uridylate kinase PyrH {Pyrococcus furiosus [TaxId:	99.86
d2akoa1	250	Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1	99.85
d2a1fa1	236	Uridylate kinase PyrH {Haemophilus influenzae [Tax	99.84
d2ij9a1	219	Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax	99.81
d1ybda1	236	Uridylate kinase PyrH {Neisseria meningitidis [Tax	99.79
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.76
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.73
d1z9da1	238	Uridylate kinase PyrH {Streptococcus pyogenes [Tax	99.65
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	99.63
d2j0wa3	64	Aspartokinase {Escherichia coli [TaxId: 562]}	99.56
d2bufa1	300	N-acetyl-l-glutamate kinase {Pseudomonas aeruginos	99.56
d2btya1	282	N-acetyl-l-glutamate kinase {Thermotoga maritima [	99.56
d2ap9a1	291	N-acetyl-l-glutamate kinase {Mycobacterium tubercu	99.55
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	99.52
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	99.52
d1e19a_	313	Carbamate kinase {Archaeon Pyrococcus furiosus [Ta	99.28
d1b7ba_	307	Carbamate kinase {Enterococcus faecium [TaxId: 135	99.25
d1gs5a_	258	N-acetyl-l-glutamate kinase {Escherichia coli [Tax	98.44
d1zhva2	66	Hypothetical protein Atu0741 {Agrobacterium tumefa	96.53
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	95.7
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	95.6
d1zvpa2	64	Hypothetical protein VC0802 {Vibrio cholerae [TaxI	95.42
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	95.24
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	95.06
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	93.02
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	92.73
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	92.7
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	91.63
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	91.62
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	90.74
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	88.99

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.5e-50  Score=375.82  Aligned_cols=203  Identities=29%  Similarity=0.480  Sum_probs=183.7

Q ss_pred             HHHHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchh
Q 020431           13 YEFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE   87 (326)
Q Consensus        13 ~~~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~   87 (326)
                      .+.+...+++|++++.     ++++++.+|+++|+||+||+++++++|+++|+++.+++++++++++++.+++..++...
T Consensus        88 ~~~~~~~~~~l~~~l~~i~~~~~~s~~~~D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a~~~~~~  167 (304)
T d2cdqa1          88 PSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEAT  167 (304)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTH
T ss_pred             hhHHHHHHHHHHHHHhhhccccccchhhHHHHHHhHHHHHHHHHHHHHHHcCCceEEEeecccccccccccccccccccc
Confidence            3445666777777765     68999999999999999999999999999999999999999988888888887776544


Q ss_pred             hHH----HHHHHhhcCCCcEEEecCccccC-CCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCC
Q 020431           88 SEK----RLEKWFSQSPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (326)
Q Consensus        88 ~~~----~i~~~l~~~~~~ipVv~Gfi~~~-~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a  162 (326)
                      ...    .+..+++  .+.|||++||+|.+ ++|+++|||||||||+|+++|.+|+|+++.+|||||||||+|||++|+|
T Consensus       168 ~~~~~~~~~~~~~~--~~~v~vv~Gfig~~~~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~v~~a  245 (304)
T d2cdqa1         168 YPAVAKRLYDDWMH--DPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRA  245 (304)
T ss_dssp             HHHHHHHHHHHHHH--SCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTC
T ss_pred             hhhhHHHHhhhhhc--cCcEEEeeccccccCcCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchheeccccccCCc
Confidence            433    3444455  68899999999997 7899999999999999999999999999999999999999999999999


Q ss_pred             eEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCC
Q 020431          163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP  217 (326)
Q Consensus       163 ~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~  217 (326)
                      ++|++|||+||.||+++|++|+||+|++|+++++||++|+|+++|+.+||.|+.+
T Consensus       246 ~~i~~lsy~EA~ela~~GakvlHp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~  300 (304)
T d2cdqa1         246 TPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKT  300 (304)
T ss_dssp             CBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESC
T ss_pred             eEcCccCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEEeCC
Confidence            9999999999999999999999999999999999999999999999999999864

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-50  Score=373.07  Aligned_cols=204  Identities=32%  Similarity=0.585  Sum_probs=179.4

Q ss_pred             HHHHHHHHHHHhhhc---CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHH
Q 020431           14 EFIRSTYNFLSNVDS---GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (326)
Q Consensus        14 ~~i~~~~~~l~~~~~---~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~   90 (326)
                      +.|+..++.|..++.   .+.+++.+|.++|+||+||+++++.+|+++|+++.+++++++++ +++.+++..++...+.+
T Consensus        84 ~~l~~~~~~l~~l~~~~~~~~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~i~-t~~~~~~a~~~~~~~~~  162 (292)
T d2j0wa1          84 EEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMR-TNDRFGRAEPDIAALAE  162 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCB-BCSCTTSCCBCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcccChHHHHHHHhhhHHHhHHHHHHHHHhcCCCccccchhheee-cCCccccccchhhhhhh
Confidence            446666666665553   58899999999999999999999999999999999999999955 44566777788766544


Q ss_pred             HHHH-HhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeec
Q 020431           91 RLEK-WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (326)
Q Consensus        91 ~i~~-~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls  169 (326)
                      .... +.......+||++||+|.+.+|+++|||||||||+|+++|.+|+|+++++|||||||||+|||++|+|+++++||
T Consensus       163 ~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP~~v~~A~~i~~ls  242 (292)
T d2j0wa1         163 LAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIA  242 (292)
T ss_dssp             HHHHHTHHHHHHSEEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEE
T ss_pred             hhhhhhhhhhcccccccccccccccCCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeechhhcCCCceEcceeC
Confidence            3332 222113469999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCC
Q 020431          170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP  218 (326)
Q Consensus       170 ~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~  218 (326)
                      |+||.||+++|++|+||+|++|++++|||++|+|+++|+.+||.|++++
T Consensus       243 y~EA~ela~~GakVlhp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~~  291 (292)
T d2j0wa1         243 FAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKT  291 (292)
T ss_dssp             HHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCC
T ss_pred             HHHHHHHHhCCccccCHHHHHHHHHcCCcEEEeeCCCCCCCCCeEecCC
Confidence            9999999999999999999999999999999999999999999998754

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.1e-49  Score=370.18  Aligned_cols=203  Identities=37%  Similarity=0.547  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhh
Q 020431           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (326)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~   88 (326)
                      ++|+..+++|+++++     ++.+++.+|.++|+||+||+++++.+|+++|+++.+++++++++.+++.++...++...+
T Consensus        94 ~~i~~~l~~L~~~l~~~~~~~e~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~  173 (302)
T d2hmfa1          94 KIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV  173 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTEEECSCTTSCCEEEECH
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHhhhhhhHHhHHHHHHHHHcCCceEEeeccccccccCCccchhhhhhhhh
Confidence            347778889998886     689999999999999999999999999999999999999999888888888877777778


Q ss_pred             HHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeee
Q 020431           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (326)
Q Consensus        89 ~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~l  168 (326)
                      ++.+.++++  .+.|||++||+|.+.+|+++|||||||||+|+++|.+|+|+++++||||||||++||+++|+|++++++
T Consensus       174 ~~~l~~~~~--~~~v~Vv~GFig~~~~G~~ttLgRgGSD~tA~~la~~l~A~~~~i~tdv~gi~~~dP~~~~~a~~~~~~  251 (302)
T d2hmfa1         174 KERLLPLLK--EGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKL  251 (302)
T ss_dssp             HHHHHHHHH--TTCEEEEESSEEECTTCCEEECCTTTHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEE
T ss_pred             HHHHHHHHh--cCCeEEeecccccCCCCCEEEEeccCcccHHHHHHHHhccHHHHHHhccchhccchhhcCCCceEeccc
Confidence            888998887  789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCCCCceEEeCCC
Q 020431          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP  218 (326)
Q Consensus       169 s~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~~~GT~I~~~~  218 (326)
                      ||+||.||+++|+++|||+|+.|++++|||++|+|+++|+.+||.|+++.
T Consensus       252 ~y~ea~eLa~~g~~v~h~~~~~~~~~~~i~i~v~~~~~~~~~gT~i~~~~  301 (302)
T d2hmfa1         252 SYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDM  301 (302)
T ss_dssp             EHHHHHHHHHTTCTTSCGGGHHHHHHTTCCEEEEETTSTTSCCEEEESCC
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHcCCCEEEeeCCCCCCCCCEEcCCC
Confidence            99999999999999999999999999999999999999999999998753

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.86  E-value=4.7e-22  Score=176.60  Aligned_cols=151  Identities=25%  Similarity=0.298  Sum_probs=119.6

Q ss_pred             CChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCcc
Q 020431           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (326)
Q Consensus        31 ~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi  110 (326)
                      .++...+.+...++++++.++.+.|.+.|++...                  .++    ....++++  .+.|||+.+..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~----~~~~~~l~--~~~ipv~~~~~  115 (225)
T d2brxa1          60 SSETFKDFIGIQITRANAMLLIAALREKAYPVVV------------------EDF----WEAWKAVQ--LKKIPVMGGTH  115 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSCB------------------CSH----HHHHHHHH--TTCBCEECCCS
T ss_pred             hhhHHHHHhhhhHHHHHHHHHHHHHHhhhccccc------------------ccH----HHHHHHHH--hcccccccCCC
Confidence            4556677777789999999999999988876311                  122    23344566  67899986532


Q ss_pred             ccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCC------ccc
Q 020431          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA------NVL  184 (326)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~------~v~  184 (326)
                      .    +       +.+|++|+++|..++|+++++|||||||||+||+++|+|+++++++++|+.+++..|.      .++
T Consensus       116 ~----~-------~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt~dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~  184 (225)
T d2brxa1         116 P----G-------HTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVI  184 (225)
T ss_dssp             T----T-------CCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCS
T ss_pred             C----C-------cchhHHHHHHHHHhCchhhhhhhhhhhhhhcccccccccccceEEecchHHHHhccCccccCCCCcc
Confidence            1    1       2359999999999999999999999999999999999999999999999999987543      256


Q ss_pred             chhhHHHHHhCCCCEEEEeccCC---------CCCceEEeC
Q 020431          185 HPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (326)
Q Consensus       185 ~~~a~~~a~~~~I~v~I~n~~~~---------~~~GT~I~~  216 (326)
                      ++.|+++|.++|+|++|.|+++|         +..||+|.|
T Consensus       185 ~k~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i~P  225 (225)
T d2brxa1         185 DPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  225 (225)
T ss_dssp             CHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             cHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCcEecC
Confidence            67789999999999999998754         567999965

>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Glutamate 5-kinase
species: Campylobacter jejuni [TaxId: 197]

Probab=99.85  E-value=1.6e-21  Score=175.64  Aligned_cols=184  Identities=13%  Similarity=0.148  Sum_probs=135.2

Q ss_pred             hhHHHHHHHHHHHHhhhcC---------------------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccc
Q 020431           11 LSYEFIRSTYNFLSNVDSG---------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTRE   69 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~---------------------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~   69 (326)
                      ++.++++...++|.++.++                     .......+.+.+.||..++.++...|.++|+.+...-...
T Consensus        18 ~~~~~l~~~~~~I~~l~~~~~~vIV~gGa~~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~   97 (250)
T d2akoa1          18 LSFERLKNLVAFLAKLMEKYEVILVTSAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTG   97 (250)
T ss_dssp             BCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEECT
T ss_pred             cCHHHHHHHHHHHHHHHcCCeEEEEEcCcccccccccccccchhhhhhhhhcccchhHHHHHHHHhhhcccccccccccc
Confidence            5566677766666654321                     1223444567788999999999999999999876543221


Q ss_pred             eeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccC
Q 020431           70 VLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVD  149 (326)
Q Consensus        70 ~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~  149 (326)
                      ..      +. ....+....+.+.++++  .+.+||+.+.    ..+.+....++++|++|+++|..++|++++++||||
T Consensus        98 ~~------~~-~~~~~~~~~~~~~~~l~--~~~ipv~~~~----~~~~~~~~~~~~~D~~A~~lA~~~~a~~li~~tdVd  164 (250)
T d2akoa1          98 KD------FD-SRKATKHAKNAIDMMIN--LGILPIINEN----DATAIEEIVFGDNDSLSAYATHFFDADLLVILSDID  164 (250)
T ss_dssp             GG------GG-CHHHHHHHHHHHHHHHH--TTCEEEEEEC----TTTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSC
T ss_pred             cc------hh-hhhhhhhhhHHHHHHHH--hCcccccccC----ccccccccccccchhhHHHHHHhcccceeeeccCCC
Confidence            11      10 00112223467888888  8899998653    345666778899999999999999999999999999


Q ss_pred             cccccCCCCCCCCeEEeeecH--HHHHHHhh-----cCCcccchh--hHHHHHhCCCCEEEEeccCC
Q 020431          150 GVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHPR--TIIPVMRYDIPIVIRNIFNL  207 (326)
Q Consensus       150 Gv~~~dP~~~~~a~~i~~ls~--~e~~~l~~-----~g~~v~~~~--a~~~a~~~~I~v~I~n~~~~  207 (326)
                      ||||+||+++|+|++++++|+  +|..++..     .|+++|.++  |++.|+++|++++|.|+.+|
T Consensus       165 GVyd~dP~~~~~Ak~i~~It~~~~~~~~~~~~~~s~~~tGGM~~Kl~aa~~~~~~gi~v~I~nG~~~  231 (250)
T d2akoa1         165 GFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDL  231 (250)
T ss_dssp             SCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             ceeeCCCcccccccchhhccccchHHhhhhcccCCCCCCCchHHHHHHHHHHHHCCCCEEEecCCCc
Confidence            999999999999999999998  44444432     356789884  78999999999999998754

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

Probab=99.84  E-value=4.5e-20  Score=163.99  Aligned_cols=181  Identities=18%  Similarity=0.152  Sum_probs=126.1

Q ss_pred             hhHHHHHHHHHHHHhhhcC----------------------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEccc
Q 020431           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~----------------------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~   68 (326)
                      ++.++|+...+++.++...                      ..+....+...+....+.+..+...+...+.........
T Consensus        25 i~~~~i~~la~~I~~l~~~g~~vivVssg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (236)
T d2a1fa1          25 IDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF  104 (236)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCHHHHHHHHHHHHHHHHCCCeEEEEecccccchhhhhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhh
Confidence            6788999988888887751                      223334444555555666666667777666665554432


Q ss_pred             ceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeecc
Q 020431           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (326)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV  148 (326)
                      ...-          ......+..+...++  .+.++++.+.         ..+.+|++|.+|+++|..++|+.++++|||
T Consensus       105 ~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~dnD~laa~vA~~~~Ad~lii~TDV  163 (236)
T d2a1fa1         105 QLNG----------ICDTYNWSEAIKMLR--EKRVVIFSAG---------TGNPFFTTDSTACLRGIEIEADVVLKATKV  163 (236)
T ss_dssp             CCTT----------TSEECCHHHHHHHHH--TTCEEEEEST---------TSCSSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             hhhh----------hHHHhhhhhhhhhhh--hccccccccc---------ccCCCCCCcHHHHHHHHHhchhHHHHhhcc
Confidence            2210          111112244555555  5666665432         124457889999999999999999999999


Q ss_pred             CcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCCC---------CCceEEe
Q 020431          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMIC  215 (326)
Q Consensus       149 ~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~~---------~~GT~I~  215 (326)
                      |||||+||+++|+|+++++++++|+.+   .|+++++++|++.|+++|||++|.|+++|+         ..||+|.
T Consensus       164 dGvyt~dP~~~~~A~~i~~i~~~e~l~---~G~~v~k~~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI~  236 (236)
T d2a1fa1         164 DGVYDCDPAKNPDAKLYKNLSYAEVID---KELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC  236 (236)
T ss_dssp             SSCBCC-------CCBCSEECHHHHHH---TTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEEC
T ss_pred             cccccccccccccccccccccHHHHHh---cCCceeHHHHHHHHHHCCCeEEEEeCCCCcHHHHHHcCCCCcceeC
Confidence            999999999999999999999998866   499999999999999999999999998763         5699883

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.81  E-value=1.8e-19  Score=158.91  Aligned_cols=181  Identities=24%  Similarity=0.245  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHHHHhhhcCCCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEcccceee-------c-c-CCCCCC-C
Q 020431           12 SYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLI-------V-N-PTSSNQ-V   81 (326)
Q Consensus        12 ~~~~i~~~~~~l~~~~~~~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~-------~-~-~~~~g~-~   81 (326)
                      +.++|+...+++.++.+    ......++|.|..  +|-+....++.|.+....+......       . . -...+. .
T Consensus        15 ~~~~i~~la~~i~~l~~----~~~~vIVvsgG~~--ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   88 (219)
T d2ij9a1          15 ESEKIREFAKTIESVAQ----QNQVFVVVGGGKL--AREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKV   88 (219)
T ss_dssp             CHHHHHHHHHHHHHHHH----HSEEEEEECCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCTTBCSSC
T ss_pred             cHHHHHHHHHHHHHHHc----CCcEEEEECCCcc--ccchhhhhhhcCccHHHHHHHHHHHHHhhHHHHHHHhhhccchh
Confidence            34667777778887764    2234456777776  5555555555555432222110000       0 0 001111 1


Q ss_pred             CCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCC
Q 020431           82 DPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE  161 (326)
Q Consensus        82 ~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~  161 (326)
                      ..++    ...+++++  .+.+||..|++.           .+.+|++|+++|..++|+.++++||||||||+||+++|+
T Consensus        89 ~~~~----~~~~~l~~--~~~v~v~~~~~~-----------~~stD~laa~vA~~l~Ad~liilTDVDGvYt~dP~~~~~  151 (219)
T d2ij9a1          89 PVDF----MEAEELSK--LYRVVVMGGTFP-----------GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTS  151 (219)
T ss_dssp             CSSH----HHHHHHHT--TCSEEEECCCSS-----------SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSS
T ss_pred             hHHH----HHHHHHhc--cCCceEECCCCC-----------CCcccHHHHHHHHHcCchHhhhccCcccccccccccCcc
Confidence            2233    55666766  678999877532           233599999999999999999999999999999999999


Q ss_pred             CeEEeeecHHHHHHHhhcC------CcccchhhHHHHHhCCCCEEEEecc--------CCCCCceEEe
Q 020431          162 AVILRTLSYQEAWEMSYFG------ANVLHPRTIIPVMRYDIPIVIRNIF--------NLSVPGIMIC  215 (326)
Q Consensus       162 a~~i~~ls~~e~~~l~~~g------~~v~~~~a~~~a~~~~I~v~I~n~~--------~~~~~GT~I~  215 (326)
                      |++++++||+|+.+++..+      ..++++.|++.|.++|++++|.|+.        +++..||.|+
T Consensus       152 A~~i~~is~~e~~~~~~~~~~~~~gg~~~k~~Aa~~a~~~gi~~~I~~g~~~ni~~~l~Ge~vGT~Is  219 (219)
T d2ij9a1         152 AVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             CCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEECCHHHHHHHHTTCCCSEEEC
T ss_pred             cccccccCHHHHHHHhhccCccCCCCCcchHHHHHHHHHcCCcEEEecCCCcHHHHHHCCCCCceEeC
Confidence            9999999999999887532      2378999999999999999999974        2345799884

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

Probab=99.79  E-value=2.1e-18  Score=152.58  Aligned_cols=181  Identities=19%  Similarity=0.193  Sum_probs=135.0

Q ss_pred             hhHHHHHHHHHHHHhhhcC----------------------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEccc
Q 020431           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~----------------------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~   68 (326)
                      ++.++|+...++|.++.+.                      ...........+.+..+....+...+...+.........
T Consensus        24 i~~~~i~~la~~I~~l~~~g~~vviVssG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (236)
T d1ybda1          24 INHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSAL  103 (236)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCHHHHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            6788899988888887651                      122333444555566666677777888888877776543


Q ss_pred             ceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeecc
Q 020431           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (326)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV  148 (326)
                      ....          .........+...++  .+.++++...         ..+.+|++|.+|+++|..++|+.++++|||
T Consensus       104 ~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~gdnD~laa~vA~~~~ad~liilTdV  162 (236)
T d1ybda1         104 SMQQ----------IAETYARPKAIQYLE--EGKVVIFAAG---------TGNPFFTTDTAAALRGAEMNCDVMLKATNV  162 (236)
T ss_dssp             CBSS----------SCEECCHHHHHHHHH--TTCEEEEEST---------TSSTTCCHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             hhhh----------hhhhHHHHHHHhhhc--cCceeccccc---------cccccccchHHHHHHHHHhCccceeeccCc
Confidence            3211          111112244555555  5566665322         124467889999999999999999999999


Q ss_pred             CcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCC---------CCCceEEe
Q 020431          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (326)
Q Consensus       149 ~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~---------~~~GT~I~  215 (326)
                      |||||+||+++|+|++++.++++|+.+   .|+++|+++|++.|+++|||++|.|+++|         +..||+|.
T Consensus       163 dGvy~~dP~~~~~a~~~~~~~~~e~~~---~g~~~m~~~Aa~~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh  235 (236)
T d1ybda1         163 DGVYTADPKKDPSATRYETITFDEALL---KNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH  235 (236)
T ss_dssp             SSCBSSCGGGCTTCCBCSEEEHHHHHH---TTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred             cchhhccccccccceeeccccHHHHHh---cCchHHHHHHHHHHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeC
Confidence            999999999999999999999998754   48999999999999999999999999876         45799984

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.76  E-value=1.1e-18  Score=135.52  Aligned_cols=92  Identities=40%  Similarity=0.574  Sum_probs=80.3

Q ss_pred             cCCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHh
Q 020431          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (326)
Q Consensus       229 ~~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~  308 (326)
                      ++.+++|++.+|+++|+++|.+|++.||+++|+|++|+++||||+||+|++|+.+|||+|+++|.+++++.||++|+...
T Consensus         3 ~~~vk~I~~~~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~Isf~V~~~d~~~a~~~L~~~f~~~~   82 (100)
T d2hmfa3           3 DSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFGDFG   82 (100)
T ss_dssp             SSSCCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEECSTTHHHHHHHHHHHHCCC-
T ss_pred             CCceeEEEecCCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceEEEEEeHHHHHHHHHHHHHHHHhhc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999996654


Q ss_pred             cCC-----CCcceEEEc
Q 020431          309 NAG-----RLSQVCLSF  320 (326)
Q Consensus       309 ~~~-----~~~~v~~~~  320 (326)
                      ...     .+++++++.
T Consensus        83 ~~~~~~~~~i~~vsi~k   99 (100)
T d2hmfa3          83 KKSFLNNNLIRDVSVDK   99 (100)
T ss_dssp             ----CSCCCEEEEEEEE
T ss_pred             ccccccCCceeeEEEec
Confidence            444     344455543

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.73  E-value=3.1e-18  Score=123.14  Aligned_cols=67  Identities=40%  Similarity=0.646  Sum_probs=64.8

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (326)
                      +|+|+++|.+|++.||+++|+|+.|+++||||.||+|++|+.+|||+|+++|.+++++.||++|+.+
T Consensus         1 Va~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V~~~d~~~Av~~Lh~~F~~e   67 (67)
T d2hmfa2           1 VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK   67 (67)
T ss_dssp             EEEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceEEEEEeHHHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999999999999999999999999999999999999999999999753

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.65  E-value=2.4e-15  Score=132.01  Aligned_cols=183  Identities=16%  Similarity=0.169  Sum_probs=131.4

Q ss_pred             hhHHHHHHHHHHHHhhhcC----------------------CCChhHHhHhhccchHHHHHHHHHHHHHcCCceEEEccc
Q 020431           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (326)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~----------------------~~~~~~~d~i~~~GE~~s~~~~~~~L~~~Gi~a~~l~~~   68 (326)
                      ++.++|+...++|.++.+.                      ...........+.+......++...+...|+........
T Consensus        24 l~~~~l~~ia~~I~~l~~~g~~Vv~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  103 (238)
T d1z9da1          24 IDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAI  103 (238)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             cCHHHHHHHHHHHHHHHHCCCEEEEEecccccccceeccccCCcchhHHHHHHHHHHHHHHHHHHHHhhCCccchhhhhh
Confidence            7889999999999887651                      233344444555666667778888999999987776554


Q ss_pred             ceeeccCCCCCCCCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeecc
Q 020431           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (326)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV  148 (326)
                      ......         ........+....   ...++...+.   +     .....++.|..++.+|..++|+.++++|||
T Consensus       104 ~~~~~~---------~~~~~~~~i~~~~---~~~~~~~~~~---~-----~~~~~~~~d~~~~~~a~~~~a~~li~~tdV  163 (238)
T d1z9da1         104 PMQNVA---------EPYIRGRALRHLE---KNRIVVFGAG---I-----GSPYFSTDTTAALRAAEIEADAILMAKNGV  163 (238)
T ss_dssp             CBTTTB---------EECCHHHHHHHHH---TTCEEEEEST---T-----SCTTCCHHHHHHHHHHHTTCSEEEEEESSC
T ss_pred             hhHHHH---------hhhhHHHHHhhhc---cccccceecc---e-----eccCCCCchHHHHHHHHHhhhhhhcccccc
Confidence            331100         1111113333332   2222332221   1     111224568899999999999999999999


Q ss_pred             CcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchhhHHHHHhCCCCEEEEeccCC---------CCCceEEeC
Q 020431          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (326)
Q Consensus       149 ~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~a~~~a~~~~I~v~I~n~~~~---------~~~GT~I~~  216 (326)
                      ||+|++||+..++|++++++++.|..   ..|.++|++.|++.+.++||+++|.|+.+|         +..||.|+.
T Consensus       164 dGvy~~~P~~~~~a~~~~~~~~~~~~---~~g~~~~k~~Aa~~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~  237 (238)
T d1z9da1         164 DGVYNADPKKDANAVKFDELTHGEVI---KRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN  237 (238)
T ss_dssp             CSCBSSCTTTCTTCCBCSEEEHHHHH---TTTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             cceecccccccccchhhccccccchh---ccCcchhHHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCceEecc
Confidence            99999999999999999999998764   358899999999999999999999999876         467999975

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=1.1e-16  Score=117.44  Aligned_cols=69  Identities=28%  Similarity=0.354  Sum_probs=64.7

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhcC
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNA  310 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~~  310 (326)
                      .|+|+++| +|.+.||+++|+|++|++.||||.||+|++|+.+|||+|+++|.+++++.||++|+.....
T Consensus         1 ~a~IsvVG-~~~~~~Giaarif~aL~~~~InV~mIsqg~se~~Is~vV~~~d~~~Av~~Lh~~f~~~~~~   69 (75)
T d2cdqa3           1 RAIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFFESGDL   69 (75)
T ss_dssp             EEEEEEEE-CGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcEEEEEC-CCCCChhHHHHHHHHHHHcCCceEEEEcCccceEEEEEEeHHHHHHHHHHHHHHHhcCCCc
Confidence            37999999 8999999999999999999999999999999999999999999999999999999765543

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.7e-15  Score=107.65  Aligned_cols=64  Identities=33%  Similarity=0.601  Sum_probs=59.8

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~  306 (326)
                      +|+|+++|.+|++.||+.+|+|++|++  +||.|++|++|+.+|||+|+++|.+++++.||++|+.
T Consensus         1 la~IsvvG~gm~~~~gi~arif~~L~~--~nI~~i~~~~Se~~is~vV~~~d~~~Av~aLh~~Ffe   64 (64)
T d2j0wa3           1 LALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE   64 (64)
T ss_dssp             EEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCcccCccHHHHHHHHHhh--CCCeEEEEEcCccEEEEEEcHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999976  5667899999999999999999999999999999973

>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.56  E-value=1.7e-14  Score=132.64  Aligned_cols=157  Identities=12%  Similarity=0.183  Sum_probs=124.1

Q ss_pred             chHHHHHHHHHHHHHcCCceEEEcccceeeccCCC-----------------CCC----CCCCchhhHHHHHHHhhcCCC
Q 020431           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS-----------------SNQ----VDPDFSESEKRLEKWFSQSPS  101 (326)
Q Consensus        43 GE~~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~-----------------~g~----~~~~~~~~~~~i~~~l~~~~~  101 (326)
                      |+.  .+.+++.|.+.|+++.++++.+...+...+                 +|.    ..+|.    +.+..+++  .+
T Consensus       105 g~v--n~~lv~~l~~~g~~a~~l~~~d~~~i~~~~~~~~~~~~~~~~~~~id~g~~G~v~~v~~----~~i~~ll~--~g  176 (300)
T d2bufa1         105 GQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNV----GLLNMLVK--GD  176 (300)
T ss_dssp             HTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECH----HHHHHHHH--TT
T ss_pred             hHH--HHHHHHHHHhcCCcccccCCCccceEEeecccccccCcccccccccccCcccceeecch----hHHHHHhc--CC
Confidence            555  566788999999999999887754332110                 111    12344    78888998  89


Q ss_pred             cEEEecCccccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC-
Q 020431          102 NTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG-  180 (326)
Q Consensus       102 ~ipVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g-  180 (326)
                      .|||+++. +.+.+|+..++.   +|..|+.+|.+|+|++++|+|||+|||+.+      .+++++++.+|+.++...| 
T Consensus       177 ~Ipvis~~-~~~~~G~~~nin---~D~~Aa~lA~~L~AdkLI~Ltdv~Gv~~~~------g~~~~~l~~~~~~~li~~~~  246 (300)
T d2bufa1         177 FIPVIAPI-GVGSNGESYNIN---ADLVAGKVAEALKAEKLMLLTNIAGLMDKQ------GQVLTGLSTEQVNELIADGT  246 (300)
T ss_dssp             CEEEEEEE-EECTTSCEEECC---HHHHHHHHHHHHTCSEEEEEESSSCCBCTT------SCBCCEECHHHHHHHHHTTC
T ss_pred             CeEEeccc-ccCcccchhccc---HHHHHHHHHHHcCCCeEEEEcCCCccccCC------CcchhhccHHHHHHHHHcCC
Confidence            99999985 888999998874   899999999999999999999999999754      4578899999999998766 


Q ss_pred             -Ccccchh--hHHHHHhCCCC-EEEEeccCC----------CCCceEEeCC
Q 020431          181 -ANVLHPR--TIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (326)
Q Consensus       181 -~~v~~~~--a~~~a~~~~I~-v~I~n~~~~----------~~~GT~I~~~  217 (326)
                       .++|.|+  ++..|.+.|++ ++|.|+..|          +..||.|+++
T Consensus       247 i~gGM~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~~~  297 (300)
T d2bufa1         247 IYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR  297 (300)
T ss_dssp             SCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred             cCchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHcCCCCceeEEecC
Confidence             3688885  77778889997 999997543          4579999864

>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=3.5e-14  Score=129.26  Aligned_cols=154  Identities=18%  Similarity=0.147  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHcCCceEEEcccceeeccC------CCC---CC-CCCCchhhHHHHHHHhhcCCCcEEEecCccccCCC
Q 020431           46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNP------TSS---NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (326)
Q Consensus        46 ~s~~~~~~~L~~~Gi~a~~l~~~~~~~~~~------~~~---g~-~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~  115 (326)
                      +....+...|.+.|+++..+++.+......      ..+   |. ..+|.    +.++.+++  .+.|||++++ +.+.+
T Consensus       101 ~~n~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~d~~~~g~~~~v~~----~~i~~lL~--~~~ipvi~~~-~~~~~  173 (282)
T d2btya1         101 KINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNP----EILHALIE--NDYIPVIAPV-GIGED  173 (282)
T ss_dssp             THHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECT----HHHHHHHH--TTCEEEEESE-EECSS
T ss_pred             hhhHHHHHHHHhcCCCeeeeeccccceeEeccccccccccccccccccCh----HHHHHHHh--CCCceeecCc-ccCCc
Confidence            446778889999999999998876533211      111   11 23455    88999998  8999999997 77888


Q ss_pred             CCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcC--Ccccchh--hHHH
Q 020431          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TIIP  191 (326)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g--~~v~~~~--a~~~  191 (326)
                      |++.++   ++|.+|+.+|..++|++++|+|||+|+|+       +++++++++.+|+.++...+  .++|.++  ++..
T Consensus       174 g~~~nl---~~d~~aa~iA~~l~AdkLI~ltdv~Gl~~-------d~~~i~~~~~~~~~~~~~~~~~tgGM~~Kl~aA~~  243 (282)
T d2btya1         174 GHSYNI---NADTAAAEIAKSLMAEKLILLTDVDGVLK-------DGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVS  243 (282)
T ss_dssp             SCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCEE-------TTEECCEECHHHHHHHHTTTCSCTTHHHHHHHHHH
T ss_pred             ceeeec---cccchhHHHhhhcCCceeEEeccccceec-------CccccccCCHHHHHHHHHcCCcCchHHHHHHHHHH
Confidence            998876   48999999999999999999999999995       35889999999999887654  4678884  7888


Q ss_pred             HHhCCCC-EEEEeccCC----------CCCceEEeC
Q 020431          192 VMRYDIP-IVIRNIFNL----------SVPGIMICR  216 (326)
Q Consensus       192 a~~~~I~-v~I~n~~~~----------~~~GT~I~~  216 (326)
                      |.++|++ ++|.|+..+          +..||+|++
T Consensus       244 A~~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I~~  279 (282)
T d2btya1         244 AVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKE  279 (282)
T ss_dssp             HHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECC
T ss_pred             HHHcCCCEEEEeCCCCCCHHHHHHhCCCCceEEEEe
Confidence            8999998 999998543          456999976

>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=3.9e-14  Score=129.43  Aligned_cols=156  Identities=13%  Similarity=0.178  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHcCCceEEEcccceeeccCC-----------CCCC----CCCCchhhHHHHHHHhhcCCCcEEEecCcccc
Q 020431           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPT-----------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (326)
Q Consensus        48 ~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~-----------~~g~----~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~  112 (326)
                      .+.+.+.+.++|+.+..+.+.+.......           .++.    ..++.    +.|..+++  .+.|||++++ +.
T Consensus       107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~G~v~~v~~----~~I~~ll~--~g~ipvi~~~-~~  179 (291)
T d2ap9a1         107 GRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNT----AAMLDLVA--AGRIPVVSTL-AP  179 (291)
T ss_dssp             HHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECH----HHHHHHHH--TTCEEEEESE-EE
T ss_pred             HHHHHHHHHhcCCccccchhhhcccccccccccccccccccceeecccccchH----HHHHHHHh--cCCCcccCcc-cc
Confidence            56678889999999999877654332110           0111    12333    78999998  8999999997 77


Q ss_pred             CCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhhcCCcccchh--hHH
Q 020431          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR--TII  190 (326)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~~g~~v~~~~--a~~  190 (326)
                      +.+|+..++   ++|.+|+.+|.+++|++++|+|||||||+.+|+.   .++++.++..|+.++...+..+|.|+  ++.
T Consensus       180 ~~~g~~~n~---d~D~lAa~lA~~l~AdkLI~LTdv~Gv~~~~~~~---~~~~~~~~~~~~~~~~~~~~gGM~~Kl~aA~  253 (291)
T d2ap9a1         180 DADGVVHNI---NADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDR---DSLVSEIDTGTLAQLLPTLELGMVPKVEACL  253 (291)
T ss_dssp             CTTCCEEEE---CHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCT---TCEESEEEHHHHHHHGGGSCTTTHHHHHHHH
T ss_pred             CCccccccc---cHHHHHHHHHHhcCCcEEEEeeccCccccccccc---ccccccCCHHHHHHHHhhhhCchHHHHHHHH
Confidence            888998775   4899999999999999999999999999998864   35778888999999988788899885  777


Q ss_pred             HHHhCCCC-EEEEeccCC----------CCCceEEeC
Q 020431          191 PVMRYDIP-IVIRNIFNL----------SVPGIMICR  216 (326)
Q Consensus       191 ~a~~~~I~-v~I~n~~~~----------~~~GT~I~~  216 (326)
                      .|.+.|++ ++|.|+..+          +..||.|..
T Consensus       254 ~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~r  290 (291)
T d2ap9a1         254 RAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVR  290 (291)
T ss_dssp             HHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEEC
T ss_pred             HHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCceEEec
Confidence            88889998 999997533          357998853

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.52  E-value=4.6e-15  Score=112.72  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=78.1

Q ss_pred             CCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHHHhc
Q 020431          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN  309 (326)
Q Consensus       230 ~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~~~~  309 (326)
                      ..+++|++++|+++|+++|.+|.+.||+++++|+.|+++||||+||+|  |+.+|||++++++..++...+++.+...-.
T Consensus         2 ~~v~~I~~~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~--Se~~is~~v~~~~~~~a~~~~~~~~~~~~e   79 (91)
T d2cdqa2           2 SILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHVVEE   79 (91)
T ss_dssp             CCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE--ETTEEEEEECCGGGSSSCCCHHHHHHHHHH
T ss_pred             CceEEEEEeCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe--cCCeEEEEEchhHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999995  799999999999998887777765554444


Q ss_pred             CCCCcceEEEc
Q 020431          310 AGRLSQVCLSF  320 (326)
Q Consensus       310 ~~~~~~v~~~~  320 (326)
                      ...++.|+|..
T Consensus        80 l~~ia~VsVv~   90 (91)
T d2cdqa2          80 LEKIAVVNLLK   90 (91)
T ss_dssp             HTTTSEEEEEE
T ss_pred             HhCCceEEEee
Confidence            46788888764

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.1e-16  Score=120.24  Aligned_cols=88  Identities=19%  Similarity=0.219  Sum_probs=79.5

Q ss_pred             CCeeeEEeecCeEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHHHHH-Hh
Q 020431          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE-AL  308 (326)
Q Consensus       230 ~~v~~I~~~~~ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~f~~-~~  308 (326)
                      ..+|+|++++|+++|+++|.+|...+|+++++|++|+++||||+||+  +|+.+|||+|++++..++++.||.+|+. ++
T Consensus         3 p~vk~I~~~~~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis--~Se~~is~~v~~~~~~~av~~L~~~~~~~eL   80 (91)
T d2j0wa2           3 PLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT--TSEVSVALTLDTTGSTSTGDTLLTQSLLMEL   80 (91)
T ss_dssp             CSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEE--EETTEEEEEECCCCCSSTTCCSSCHHHHHHH
T ss_pred             CcceEEEEeCCEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEE--ccCcEEEEEEchhHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999  4799999999999999999999977654 44


Q ss_pred             cCCCCcceEEEcC
Q 020431          309 NAGRLSQVCLSFW  321 (326)
Q Consensus       309 ~~~~~~~v~~~~~  321 (326)
                        ..++.|+|+++
T Consensus        81 --~~~~~V~ve~G   91 (91)
T d2j0wa2          81 --SALCRVEVEEG   91 (91)
T ss_dssp             --HHHSCEEEEEE
T ss_pred             --hccCcEEEeeC
Confidence              33888998864

>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.28  E-value=7.1e-12  Score=115.23  Aligned_cols=119  Identities=16%  Similarity=0.179  Sum_probs=91.9

Q ss_pred             HHHHHHhhcCCCcEEEecCcccc-------CCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCC
Q 020431           90 KRLEKWFSQSPSNTIIATGFIAS-------TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gfi~~-------~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a  162 (326)
                      ..+..+++  .+.+|++.+....       +.+|+..++   ++|..|+.+|.+++|+.++|+|||||||+.+|+  +++
T Consensus       176 ~~i~~~~~--~~~i~vl~~~~~~~v~~~~~~~~G~~~ni---naD~lAa~vA~~l~Ad~LIlLTdv~Gv~~~~~~--~~~  248 (313)
T d1e19a_         176 ETIKKLVE--RGVIVIASGGGGVPVILEDGEIKGVEAVI---DKDLAGEKLAEEVNADIFMILTDVNGAALYYGT--EKE  248 (313)
T ss_dssp             HHHHHHHH--TTCEEECSGGGCEEEEEETTEEEECCCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEETTTS--TTC
T ss_pred             cceeeccc--cchhhhhccCCCCCccccCCCcCceEEec---chhHHHHHHHHHHHHHHHHhccCCcceeccCCC--ccc
Confidence            67888888  8899988764221       123555554   589999999999999999999999999998775  678


Q ss_pred             eEEeeecHHHHHHHhhc---CCcccchh--hHHHHHhCCC-CEEEEecc------CCCCCceEEeC
Q 020431          163 VILRTLSYQEAWEMSYF---GANVLHPR--TIIPVMRYDI-PIVIRNIF------NLSVPGIMICR  216 (326)
Q Consensus       163 ~~i~~ls~~e~~~l~~~---g~~v~~~~--a~~~a~~~~I-~v~I~n~~------~~~~~GT~I~~  216 (326)
                      +++++++.+|+.++...   +.++|-||  ++..|.+.|+ +++|.+..      +. ..||.|.|
T Consensus       249 ~~i~~l~~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~~~~i~~~l~g-~~GT~i~P  313 (313)
T d1e19a_         249 QWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP  313 (313)
T ss_dssp             EECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred             ceeeeCCHHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECChHHHHHHHCC-CCCCEEcC
Confidence            99999999999999864   45679996  6666667776 58886642      22 25999875

>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Enterococcus faecium [TaxId: 1352]

Probab=99.25  E-value=9.3e-12  Score=113.79  Aligned_cols=108  Identities=17%  Similarity=0.218  Sum_probs=85.2

Q ss_pred             HHHHHHhhcCCCcEEEecCc-----cccCCCCCcccccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeE
Q 020431           90 KRLEKWFSQSPSNTIIATGF-----IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (326)
Q Consensus        90 ~~i~~~l~~~~~~ipVv~Gf-----i~~~~~g~~~~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~  164 (326)
                      ..+...++  .+.+|+...-     .+.+.+|+..+.   ++|..|+.+|..++|++++|+|||||||+.+|+  ++.++
T Consensus       172 ~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~g~~~ni---naD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~--~~~~~  244 (307)
T d1b7ba_         172 ETINTLIK--NDIITISCGGGGIPVVGQELKGVEAVI---DKDFASEKLAELVDADALVILTGVDYVCINYGK--PDEKQ  244 (307)
T ss_dssp             HHHHHHHH--TTEEEECSGGGCEEEETTTTEECSCCC---CHHHHHHHHHHHHTCSEEEEECSSSSCEETTTS--TTCEE
T ss_pred             hhhhhhhh--cCceeeccCCccccccccCCCCcEEec---chhHHHHHHHHHhhhhheeeccccCceeeCCCc--ccccc
Confidence            55666666  6777775332     134456777664   589999999999999999999999999999886  67789


Q ss_pred             EeeecHHHHHHHhhcC---Ccccchh--hHHHHHhCCCC-EEEEec
Q 020431          165 LRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDIP-IVIRNI  204 (326)
Q Consensus       165 i~~ls~~e~~~l~~~g---~~v~~~~--a~~~a~~~~I~-v~I~n~  204 (326)
                      +++++.+|+.++...|   .++|.||  |+..|.++|+. +.|.+.
T Consensus       245 i~~l~~~e~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~~  290 (307)
T d1b7ba_         245 LTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS  290 (307)
T ss_dssp             CSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEEC
T ss_pred             cccCCHHHHHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEECC
Confidence            9999999999998754   5779996  88888999995 555543

>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=1.3e-06  Score=75.60  Aligned_cols=151  Identities=14%  Similarity=0.075  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHcCCceEEEcccceeeccCC----CC---CC-CCCCchhhHHHHHHHhhcCCCcEEEecCccccCCCCCcc
Q 020431           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPT----SS---NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPT  119 (326)
Q Consensus        48 ~~~~~~~L~~~Gi~a~~l~~~~~~~~~~~----~~---g~-~~~~~~~~~~~i~~~l~~~~~~ipVv~Gfi~~~~~g~~~  119 (326)
                      ...+...+...|.++..+...........    .+   +. ..++.    ..+...+.  .+.+|++.++ +.+.++...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~--~~~i~v~~~~-~~~~~~~~~  157 (258)
T d1gs5a_          85 NKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSP----KLINSLLE--NGYLPVVSSI-GVTDEGQLM  157 (258)
T ss_dssp             HHHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCC----HHHHHHHH--TTCEEEECSE-EECTTSCEE
T ss_pred             HHHHHHHHhccCcccccccccccccccccccccccccccccccccc----chHHHHHh--cccccccccc-ccccCCcEE
Confidence            45666788899999888876544222110    00   11 12344    66777777  8899999987 566677766


Q ss_pred             cccCCcchHHHHHHHHhhccceEEEeeccCcccccCCCCCCCCeEEeeecHHHHHHHhh--cCCcccchh--hHHHHHhC
Q 020431          120 TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--FGANVLHPR--TIIPVMRY  195 (326)
Q Consensus       120 ~lgrggsD~~A~~lA~~l~a~~~~~~tDV~Gv~~~dP~~~~~a~~i~~ls~~e~~~l~~--~g~~v~~~~--a~~~a~~~  195 (326)
                      ++   .+|..++.+|..++|+. ++++|++|++..++.      ..+.++..+......  .+.++|-||  ++..|.++
T Consensus       158 ~~---~~~~~a~~~a~~l~a~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~  227 (258)
T d1gs5a_         158 NV---NADQAATALAATLGADL-ILLSDVSGILDGKGQ------RIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAART  227 (258)
T ss_dssp             EC---CHHHHHHHHHHHHTCEE-EEEESSSSCBCTTSC------BCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHH
T ss_pred             Ee---chhhhhhhHHHHHHhhh-hhhcccccccccccc------cccccchHHHHHHHhCCcccchHHHHHHHHHHHHHc
Confidence            65   47999999999999986 467899999987654      334555566555543  456789886  78888899


Q ss_pred             CCC-EEEEeccCC---------CCCceEEe
Q 020431          196 DIP-IVIRNIFNL---------SVPGIMIC  215 (326)
Q Consensus       196 ~I~-v~I~n~~~~---------~~~GT~I~  215 (326)
                      |++ ++|.|+..+         +..||.|.
T Consensus       228 Gv~~v~I~~g~~~~~L~~l~~g~~~GT~i~  257 (258)
T d1gs5a_         228 LGRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             HTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             CCCEEEEEeCCCchHHHHHhcCCCCceEEe
Confidence            996 899998543         45699884

>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Atu0741-like
domain: Hypothetical protein Atu0741
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.53  E-value=0.0065  Score=41.57  Aligned_cols=57  Identities=12%  Similarity=0.240  Sum_probs=48.8

Q ss_pred             EEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHH
Q 020431          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       243 ~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      .+++.|..-.+..|+++++.+.|+++||++..+|  +=.+.. ++|++++.+++++.|.+
T Consensus         4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vS--ty~~D~-ilVp~~~~~~A~~~L~~   60 (66)
T d1zhva2           4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVS--TFDGDH-LLVRSNDLEKTADLLAN   60 (66)
T ss_dssp             EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEE--CSSCEE-EEEEGGGHHHHHHHHHH
T ss_pred             EEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEE--eeeccE-EEEEHHHHHHHHHHHHH
Confidence            4677787667889999999999999999999998  545555 56899999999999987

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.70  E-value=0.023  Score=40.14  Aligned_cols=58  Identities=24%  Similarity=0.399  Sum_probs=41.3

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEE--EE--ccc-cHHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF--AV--PEK-EVKAVAEALES  302 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~--~V--~~~-d~~~av~~Lh~  302 (326)
                      ++|++.|+   ++||+.+++.+.|+++|+||.-++|........+  .+  +.. +.+++.+.|..
T Consensus         3 ~vitv~g~---DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGK---DKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEES---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred             EEEEEEcC---CCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHHH
Confidence            57899984   6899999999999999999999998765333333  33  222 45555544443

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.60  E-value=0.023  Score=39.15  Aligned_cols=52  Identities=10%  Similarity=0.176  Sum_probs=40.1

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCC-ccEEEEEEccccHHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASS-EHSVCFAVPEKEVKAVAEALESK  303 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~s-e~sIs~~V~~~d~~~av~~Lh~~  303 (326)
                      +.++||.++++.+.|+++||||..++-+.+ +..++-++ -.+.+++.+.|++.
T Consensus        10 ~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Rii-v~~~e~a~~~L~~~   62 (70)
T d2f06a2          10 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI-VSDPDKAYKALKDN   62 (70)
T ss_dssp             ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE-ESCHHHHHHHHHHT
T ss_pred             EeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEE-ECChHHHHHHHHHC
Confidence            568999999999999999999999986554 44554433 24678888888763

>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: VC0802-like
domain: Hypothetical protein VC0802
species: Vibrio cholerae [TaxId: 666]

Probab=95.42  E-value=0.029  Score=37.83  Aligned_cols=58  Identities=16%  Similarity=0.196  Sum_probs=45.6

Q ss_pred             EEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHH
Q 020431          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (326)
Q Consensus       242 a~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~  302 (326)
                      .+|++.-..-.+..|+.+.+-+.|+++||++..++  +=.+.- +.|++++.++|++.|.+
T Consensus         4 r~ItL~vhssLe~VGl~A~is~~La~~~Is~nvis--~~~hDh-ifVp~~~~~~Al~~L~~   61 (64)
T d1zvpa2           4 SLITLTVHSSLEAVGLTAAFATKLAEHGISANVIA--GYYHDH-IFVQKEKAQQALQALGE   61 (64)
T ss_dssp             EEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEE--CSSCEE-EEEEGGGHHHHHHHHTT
T ss_pred             EEEEEecCCchHHHhHHHHHHHHHHHCCCCeEEEE--eeccce-EEEchhhHHHHHHHHHH
Confidence            34666655566788999999999999999999998  434444 67899999999999865

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=95.24  E-value=0.029  Score=39.99  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=35.0

Q ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEE
Q 020431          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF  286 (326)
Q Consensus       241 ia~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~  286 (326)
                      ..+|++.|.   ++||+.+++.+.|+++|+||.-++|..-+...++
T Consensus         5 ~~vitv~G~---DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~   47 (86)
T d1u8sa1           5 HLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTL   47 (86)
T ss_dssp             EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE
T ss_pred             EEEEEEEeC---CCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEE
Confidence            457899985   6899999999999999999999998765433333

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.06  E-value=0.022  Score=39.28  Aligned_cols=53  Identities=15%  Similarity=0.285  Sum_probs=40.5

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCccEEEEEEccccHHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se~sIs~~V~~~d~~~av~~Lh~~  303 (326)
                      +.+.||-++++.+.|+++||||..+.-..+...=.+.+.-+|.+++.+.|.+.
T Consensus         6 v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~~~a~~~L~~~   58 (71)
T d2f06a1           6 CPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEK   58 (71)
T ss_dssp             EESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHT
T ss_pred             ecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCHHHHHHHHHHC
Confidence            67899999999999999999998765333333323445556889999999874

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.02  E-value=0.14  Score=35.58  Aligned_cols=51  Identities=14%  Similarity=0.182  Sum_probs=38.6

Q ss_pred             CCcccHHHHHHHHHHhCCCcEEEEEecC---CccEE-EEEEccccHHHHHHHHHH
Q 020431          252 AGVPGTANAIFGAVKDVGANVIMISQAS---SEHSV-CFAVPEKEVKAVAEALES  302 (326)
Q Consensus       252 ~~~~~i~a~if~~L~~~~I~v~~Isq~~---se~sI-s~~V~~~d~~~av~~Lh~  302 (326)
                      .+.||+++++-+.|+++||||.....+.   .+..+ .+-+++.-.+++++.|.+
T Consensus        11 ~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~~~~~vl~~I~~   65 (78)
T d1ygya3          11 VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAA   65 (78)
T ss_dssp             SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCCCccHHHHHHHHc
Confidence            5789999999999999999999865432   23333 444677777888888876

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.73  E-value=0.099  Score=36.35  Aligned_cols=52  Identities=10%  Similarity=0.139  Sum_probs=38.9

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecC-----CccEEEEEEcc-c-cHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQAS-----SEHSVCFAVPE-K-EVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~-----se~sIs~~V~~-~-d~~~av~~Lh~  302 (326)
                      ..++||+++.+.+.++++++||..++|..     .+..+++.+.. . +++++++.|.+
T Consensus         8 ~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~   66 (77)
T d1y7pa2           8 AENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKT   66 (77)
T ss_dssp             EECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHT
T ss_pred             EecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHc
Confidence            35789999999999999999999998774     46678887754 3 78888888866

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=92.70  E-value=0.13  Score=35.89  Aligned_cols=52  Identities=15%  Similarity=0.241  Sum_probs=38.7

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCc----cEEEEEEccc--cHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se----~sIs~~V~~~--d~~~av~~Lh~  302 (326)
                      ..+.||+++|+...|++.|+|++.++-+.++    ..++++++.+  .++++.+.|++
T Consensus        10 v~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~K   67 (78)
T d2fgca2          10 VHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYK   67 (78)
T ss_dssp             EECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTT
T ss_pred             EeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhC
Confidence            3478999999999999999999999866542    3366666543  46666666655

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=91.63  E-value=0.12  Score=36.00  Aligned_cols=52  Identities=19%  Similarity=0.284  Sum_probs=39.0

Q ss_pred             CCCcccHHHHHHHHHHhCCCcEEEEEecCCc----cEEEEEEccc--cHHHHHHHHHH
Q 020431          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALES  302 (326)
Q Consensus       251 ~~~~~~i~a~if~~L~~~~I~v~~Isq~~se----~sIs~~V~~~--d~~~av~~Lh~  302 (326)
                      ..+.||+++|+...|++.|+|++.++-+.++    ..++++++..  .++++.+.|++
T Consensus         9 veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~K   66 (77)
T d2pc6a2           9 MENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNK   66 (77)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred             EECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhC
Confidence            3478999999999999999999999866542    3466666543  56666666665

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=91.62  E-value=0.53  Score=33.44  Aligned_cols=32  Identities=16%  Similarity=0.065  Sum_probs=27.7

Q ss_pred             EEEEecCCCCCcccHHHHHHHHHHhCCCcEEEEEe
Q 020431          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (326)
Q Consensus       243 ~IsivG~~~~~~~~i~a~if~~L~~~~I~v~~Isq  277 (326)
                      -|.|.|+   ++||+.+++.+.|+++|+||.-++|
T Consensus         8 ~v~v~g~---DrpGIV~~it~~la~~~~nI~~l~t   39 (93)
T d1u8sa2           8 EVYVESD---DKLGLTEKFTQFFAQRQIGMASLSA   39 (93)
T ss_dssp             EEEEEES---CCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEEEEEC---CCCCHHHHHHHHHHHcCCCchhhhc
Confidence            4567775   6899999999999999999998875

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=90.74  E-value=0.16  Score=35.30  Aligned_cols=51  Identities=12%  Similarity=0.225  Sum_probs=38.1

Q ss_pred             CCcccHHHHHHHHHHhCCCcEEEEEecCC----ccEEEEEEccc--cHHHHHHHHHH
Q 020431          252 AGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEK--EVKAVAEALES  302 (326)
Q Consensus       252 ~~~~~i~a~if~~L~~~~I~v~~Isq~~s----e~sIs~~V~~~--d~~~av~~Lh~  302 (326)
                      .+.||+++|+...|++.|+||+.++-+.+    -..+++++...  .++++.+.|.+
T Consensus         9 ~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           9 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHK   65 (76)
T ss_dssp             ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhC
Confidence            47899999999999999999999986654    23466666544  45666666655

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=88.99  E-value=0.34  Score=33.92  Aligned_cols=28  Identities=18%  Similarity=0.252  Sum_probs=24.4

Q ss_pred             CCcccHHHHHHHHHHhCCCcEEEEEecC
Q 020431          252 AGVPGTANAIFGAVKDVGANVIMISQAS  279 (326)
Q Consensus       252 ~~~~~i~a~if~~L~~~~I~v~~Isq~~  279 (326)
                      .+.||+++++.+.|+++|+||.....+.
T Consensus        19 ~d~PGvla~I~~~l~~~~iNI~~~~~~~   46 (84)
T d1sc6a3          19 ENRPGVLTALNKIFAEQGVNIAAQYLQT   46 (84)
T ss_dssp             ESCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CCcCCHHHHHHHHHHHcCCCHHHhcccc
Confidence            5789999999999999999998776444