Citrus Sinensis ID: 020435

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEccEEEEcccccccccEEEEccccccccHHEEEccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHccccEEEcccccccccHHHHHHHHHcccccEEEEccccHHHHHHHHHHHcccccEEEEEEEccccccEEEcccHHEEcccEEEEEEcccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccEcccccEEEEEEEEcccccccccccEEEEcccccccccHHHHcccccccccccccccccccccccccEEEcccEEEEccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEcHHHcccccHHEEEEEcccccccEEEEEccHHHHHHHHHHHHHccccEEEEEEEcccccccEEEccHHHHcccEEEEccHHHccHHHHHHHHHHHHHccccccHHHEEEEEEHHHHHHHHHHHHcccccEEEEEEcc
Coil and Loop (DISEMBL)
mkdfpavfprilghEAIGVVEsvgenvdgvvegdvviphfladctecvgcrskkgnlcsafpfkispwmprdqtsrfkdlrgetihhfvsvssfseytvLDIAHvvkvdptvppnracllscgvstgvgAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKfeigkrfgvtefvnskncgdksvSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVlgvdqpgsqlslssFEVLHSGKILMGslfgglkaksdipILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Flexible Loop (DISEMBL)
MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSafpfkispwmprdQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRfgvtefvnskncgdksVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Low Complexity Region (SEG)
MKDFPAVFPRILGHEAIgvvesvgenvdgvvegdvvIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Disordered region (IsUnstruct)
*****AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM**
Disordered Region (DISOPRED)
**DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG*
Disordered Region (DISEMBL)
MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Disordered Region (DISPRO)
****PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q9FH04	390	Alcohol dehydrogenase-lik	yes	no	0.984	0.823	0.767	1e-147
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.969	0.814	0.600	1e-109
Q0V7W6	389	Alcohol dehydrogenase-lik	no	no	0.981	0.822	0.599	1e-108
Q9SK87	386	Alcohol dehydrogenase-lik	no	no	0.975	0.823	0.6	1e-107
A2XAZ3	381	Alcohol dehydrogenase cla	N/A	no	0.975	0.834	0.506	3e-91
Q0DWH1	381	Alcohol dehydrogenase cla	no	no	0.975	0.834	0.506	3e-91
Q96533	379	Alcohol dehydrogenase cla	no	no	0.966	0.831	0.504	1e-90
P80572	378	Alcohol dehydrogenase cla	N/A	no	0.975	0.841	0.493	2e-88
P93629	381	Alcohol dehydrogenase cla	N/A	no	0.972	0.832	0.483	3e-87
Q8LEB2	381	Alcohol dehydrogenase-lik	no	no	0.969	0.829	0.482	5e-83

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  520 bits (1338), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/322 (76%), Positives = 282/322 (87%), Gaps = 1/322 (0%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
           PA FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC +CV C+S K NLCS FPFK
Sbjct: 69  PACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFK 128

Query: 65  ISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
           +SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCG
Sbjct: 129 VSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCG 188

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
           VSTGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++F
Sbjct: 189 VSTGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKF 248

Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 243
           GVTEFVNS  C    VS++I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGV
Sbjct: 249 GVTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGV 308

Query: 244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 303
           D+PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFE
Sbjct: 309 DKPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFE 368

Query: 304 EINSAFDLLIKGKCLRCVIWMG 325
           EIN AF LL++GKC+RCV+WMG
Sbjct: 369 EINDAFQLLLEGKCIRCVLWMG 390

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  394 bits (1011), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/318 (60%), Positives = 245/318 (77%), Gaps = 2/318 (0%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-IS 66
           FPRILGHEA+GVVES+GENVDG  +GDVV+P F   C EC  C+S K N C  +    IS
Sbjct: 70  FPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFIS 129

Query: 67  PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 126
                   SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVST
Sbjct: 130 NTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVST 189

Query: 127 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 186
           G+GAAW+ ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+GK+FG T
Sbjct: 190 GIGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFT 249

Query: 187 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 246
           +F+N   CG+K +S++I +MT+GG DY FECVGLASL+ EA+   R G GKT++LG+++ 
Sbjct: 250 DFINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKH 309

Query: 247 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 306
            + +SL SF++L  G+++ GSLFGGLK+K DIPIL+  Y+ KEL LD F+THE+ F+EIN
Sbjct: 310 AAPISLGSFDLLR-GRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEIN 368

Query: 307 SAFDLLIKGKCLRCVIWM 324
            AF LL +GK LRC++WM
Sbjct: 369 KAFALLEEGKSLRCILWM 386

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  393 bits (1009), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/322 (59%), Positives = 248/322 (77%), Gaps = 2/322 (0%)

Query: 6   AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK- 64
           A FPRILGHEA+GV+ES+GE+V+G  +GDVV+P F   C EC  C+S K N C+ F    
Sbjct: 69  ARFPRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDF 128

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 124
           +S       TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGV
Sbjct: 129 LSNTRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGV 188

Query: 125 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 184
           STG+GAAW+ ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+GK+FG
Sbjct: 189 STGIGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFG 248

Query: 185 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 244
            T+F+NS  CG+  +S++I +MT GG DY FECVGL SL+ EA++  R G GKT+VLG+D
Sbjct: 249 FTDFINSTLCGENKISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGID 308

Query: 245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 304
           +  + +SL SF++L  G+ + GSLFGGLK K DIPIL+  Y+ KEL LD F+THE+KFEE
Sbjct: 309 KHLTPVSLGSFDLLR-GRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEE 367

Query: 305 INSAFDLLIKGKCLRCVIWMGE 326
           IN AFDLL++GK LRC++WM +
Sbjct: 368 INKAFDLLVQGKSLRCILWMNK 389

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/320 (60%), Positives = 243/320 (75%), Gaps = 2/320 (0%)

Query: 6   AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK- 64
           A FPRILGHEA+GVVES+GE VDG  +GDVV+P F   C EC  C S K N C+ +    
Sbjct: 66  ARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDY 125

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 124
           +S       TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V
Sbjct: 126 LSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSV 185

Query: 125 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 184
           +TG+GAAW+ A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIGKRFG
Sbjct: 186 ATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFG 245

Query: 185 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 244
           +T+FVN   CG+K++S++I +MTD GADY FEC+GLASL++EA+   R G GKTIVLG++
Sbjct: 246 ITDFVNPALCGEKTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGME 305

Query: 245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 304
           Q    +SL S+++L  G+ + G+LFGGLK K DIPIL+ RY+ KEL L+  +THE+ FEE
Sbjct: 306 QKALPISLGSYDLLR-GRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEE 364

Query: 305 INSAFDLLIKGKCLRCVIWM 324
           IN AF LL +G  +RC+IWM
Sbjct: 365 INKAFHLLAEGNSIRCIIWM 384

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|A2XAZ3|ADHX_ORYSI Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1

 Score =  335 bits (858), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 163/322 (50%), Positives = 228/322 (70%), Gaps = 4/322 (1%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
           KD   +FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC   
Sbjct: 59  KDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 118

Query: 62  PFKISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ CLL
Sbjct: 119 RAATGVGVMMNDRKSRF-SINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLL 177

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
            CGVSTG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+KF++ 
Sbjct: 178 GCGVSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVA 237

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K FGVTEFVN K+  DK + Q+I+D+TDGG DY FEC+G  S+++ A  CC KGWG +++
Sbjct: 238 KNFGVTEFVNPKD-HDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVI 296

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           +GV   G ++S   F+++ +G++  G+ FGG K++S +P L+++Y++KE+++D++VTH M
Sbjct: 297 VGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSM 355

Query: 301 KFEEINSAFDLLIKGKCLRCVI 322
              +IN AFDLL +G CLRCV+
Sbjct: 356 NLTDINKAFDLLHEGGCLRCVL 377

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q0DWH1|ADHX_ORYSJ Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1

 Score =  335 bits (858), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 163/322 (50%), Positives = 228/322 (70%), Gaps = 4/322 (1%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
           KD   +FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC   
Sbjct: 59  KDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 118

Query: 62  PFKISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ CLL
Sbjct: 119 RAATGVGVMMNDRKSRF-SINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLL 177

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
            CGVSTG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+KF++ 
Sbjct: 178 GCGVSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVA 237

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K FGVTEFVN K+  DK + Q+I+D+TDGG DY FEC+G  S+++ A  CC KGWG +++
Sbjct: 238 KNFGVTEFVNPKD-HDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVI 296

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           +GV   G ++S   F+++ +G++  G+ FGG K++S +P L+++Y++KE+++D++VTH M
Sbjct: 297 VGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSM 355

Query: 301 KFEEINSAFDLLIKGKCLRCVI 322
              +IN AFDLL +G CLRCV+
Sbjct: 356 NLTDINKAFDLLHEGGCLRCVL 377

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2

 Score =  333 bits (854), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 164/325 (50%), Positives = 230/325 (70%), Gaps = 10/325 (3%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC--- 58
           KD   +FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC   
Sbjct: 57  KDPEGLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKV 116

Query: 59  -SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA 117
            SA    I   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ 
Sbjct: 117 RSATGVGI---MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKV 172

Query: 118 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 177
           CLL CGV TG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+
Sbjct: 173 CLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKY 232

Query: 178 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK 237
           E  K+FGV EFVN K+  DK + ++I+D+TDGG DY FEC+G  S+++ A  CC KGWG 
Sbjct: 233 ETAKKFGVNEFVNPKD-HDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGT 291

Query: 238 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT 297
           ++++GV   G ++S   F+++ +G++  G+ FGG K+++ +P L+++YM+KE+++D+++T
Sbjct: 292 SVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYIT 350

Query: 298 HEMKFEEINSAFDLLIKGKCLRCVI 322
           H +   EIN AFDLL +G CLRCV+
Sbjct: 351 HNLTLGEINKAFDLLHEGTCLRCVL 375

Plays a central role in formaldehyde detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P80572|ADHX_PEA Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1

 Score =  326 bits (835), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 159/322 (49%), Positives = 225/322 (69%), Gaps = 4/322 (1%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
           KD   +FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC   
Sbjct: 56  KDPEGLFPCILGHEAAGIVESVGEGVTDVKPGDHVIPSYQAECGECKFCKSPKTNLCGKV 115

Query: 62  PFKISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                   M  D+ SRF  ++G+ I+HF+  S+FS+YTV+    V K+ P  P ++ CLL
Sbjct: 116 RAATGVGVMMADRKSRF-SVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLL 174

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
            CGV TG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S K++  
Sbjct: 175 GCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKYDTA 234

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K FGVTEF+N K+  +K + Q+IID+TDGG DY FEC+G  S+++ A  CC KGWG +++
Sbjct: 235 KNFGVTEFINPKD-HEKPIQQVIIDLTDGGVDYSFECLGNVSVMRSALECCHKGWGTSVI 293

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           +GV   G ++S   F+++ +G++  G+ FGG K++S +P L+++Y+ KE+++D+++TH +
Sbjct: 294 VGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNL 352

Query: 301 KFEEINSAFDLLIKGKCLRCVI 322
              EIN AFDLL +G+CLRCV+
Sbjct: 353 TLLEINKAFDLLHEGQCLRCVL 374

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P93629|ADHX_MAIZE Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1

 Score =  322 bits (824), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/327 (48%), Positives = 225/327 (68%), Gaps = 10/327 (3%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC--- 58
           KD   +FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC   
Sbjct: 59  KDPEGLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKV 118

Query: 59  -SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA 117
            SA    +   M  D  SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ 
Sbjct: 119 RSATGVGV---MMNDMKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKV 174

Query: 118 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 177
           CLL CGV TG+GA W TA VE GS V +FGLG++GLAVAEGA+  GA+R+IG+D+ ++KF
Sbjct: 175 CLLGCGVPTGLGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKF 234

Query: 178 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK 237
           ++ K FGVTEFVN K   DK + Q+++D+TDGG DY FEC+G  S+++ A  C  KGWG 
Sbjct: 235 DVAKNFGVTEFVNPKE-HDKPIQQVLVDLTDGGVDYSFECIGNVSIMRAALECSDKGWGT 293

Query: 238 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT 297
           ++++GV   G ++S   F+++ +G++  G+ FGG K+++ +P L+ +YM KE+++D+++T
Sbjct: 294 SVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYIT 352

Query: 298 HEMKFEEINSAFDLLIKGKCLRCVIWM 324
           H M   +IN AF LL +G CLRCV+ M
Sbjct: 353 HNMNLADINDAFHLLHEGGCLRCVLAM 379

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q8LEB2|ADHL6_ARATH Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2

 Score =  308 bits (788), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 154/319 (48%), Positives = 216/319 (67%), Gaps = 3/319 (0%)

Query: 6   AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 65
           ++ PRI GHEA G+VES+GE V    +GD V+  F  +C  C  C S K N+C     + 
Sbjct: 64  SLLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMER 123

Query: 66  SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 125
              M  DQ +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+
Sbjct: 124 KGLMHSDQKTRF-SIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVA 182

Query: 126 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 185
            G+GAAW  A+V+ GS+VVIFGLG++GL+VA+GA+L GA +I+GVD+   K E  K FGV
Sbjct: 183 AGLGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGV 242

Query: 186 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 245
           T+F+NS +  +  + Q+I  MT GGAD+ FECVG   +   A   C  GWG T+ LGV +
Sbjct: 243 TDFINSNDLSEP-IPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPK 301

Query: 246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 305
              ++S + + +  SGK L G+LFGG K KSD+P L+ +YM+KE+ +D+F+TH + F+EI
Sbjct: 302 AKPEVS-AHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEI 360

Query: 306 NSAFDLLIKGKCLRCVIWM 324
           N AF L+ +GKCLRCV+ M
Sbjct: 361 NKAFVLMREGKCLRCVLHM 379

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
255539138	386	alcohol dehydrogenase, putative [Ricinus	1.0	0.844	0.785	1e-150
225459818	384	PREDICTED: alcohol dehydrogenase-like 7	0.993	0.843	0.762	1e-148
15238330	390	alcohol dehydrogenase-like 7 [Arabidopsi	0.984	0.823	0.767	1e-145
356501338	387	PREDICTED: alcohol dehydrogenase-like 7-	0.993	0.837	0.753	1e-144
7705214	389	alcohol dehydrogenase ADH [Solanum lycop	0.993	0.832	0.743	1e-144
297795321	390	hypothetical protein ARALYDRAFT_494804 [	0.984	0.823	0.757	1e-144
356554321	388	PREDICTED: alcohol dehydrogenase-like 7-	0.993	0.835	0.756	1e-143
356554319	387	PREDICTED: alcohol dehydrogenase-like 7-	0.993	0.837	0.756	1e-142
356574454	392	PREDICTED: alcohol dehydrogenase-like 7-	0.993	0.826	0.740	1e-142
356574456	389	PREDICTED: alcohol dehydrogenase-like 7-	0.993	0.832	0.740	1e-142

>gi|255539138|ref|XP_002510634.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223551335|gb|EEF52821.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 256/326 (78%), Positives = 289/326 (88%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           +KDFPAVFPRILGHEA+GVVESVGE+V    EGD VIP FL DC +C  C SKK NLCS 
Sbjct: 61  LKDFPAVFPRILGHEAVGVVESVGEDVKEFKEGDTVIPTFLPDCGDCTDCISKKSNLCSK 120

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
            PFK+SPWMPR +TSRF DL GE ++HF+SVSSFS+YTV+DIAH+ KVDP++PPNRACLL
Sbjct: 121 LPFKVSPWMPRYETSRFTDLNGEALYHFLSVSSFSQYTVIDIAHLTKVDPSIPPNRACLL 180

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
           SCGVSTGVGAAWRTANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD    KFEIG
Sbjct: 181 SCGVSTGVGAAWRTANVEAGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDTNPNKFEIG 240

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K+FGVTEFV++ + G+KS SQ+I +MT GGADYCFECVGLASLV+EAY+CCRKGWGKTIV
Sbjct: 241 KKFGVTEFVSAGDLGNKSASQVINEMTGGGADYCFECVGLASLVREAYSCCRKGWGKTIV 300

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           LGVD+PG+QLSLSSF+VLHSGKIL GSLFGGLKAKSDIP+LLKRY  KEL+LD+FVTHE+
Sbjct: 301 LGVDKPGAQLSLSSFDVLHSGKILTGSLFGGLKAKSDIPVLLKRYTAKELQLDEFVTHEI 360

Query: 301 KFEEINSAFDLLIKGKCLRCVIWMGE 326
            FE+IN AFDLLI G+ LRCVIWM +
Sbjct: 361 NFEDINKAFDLLIGGESLRCVIWMNK 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459818|ref|XP_002285916.1| PREDICTED: alcohol dehydrogenase-like 7 [Vitis vinifera] gi|302141683|emb|CBI18886.3| unnamed protein product [Vitis vinifera]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/324 (76%), Positives = 288/324 (88%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           +KD P  FPRILGHEA+GVVESVGENV  V EGD+V+P FL DC EC  CRS+K NLCS 
Sbjct: 59  LKDPPGCFPRILGHEAVGVVESVGENVSEVTEGDIVLPIFLPDCGECTDCRSEKSNLCSK 118

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
           FPFK+SPWMPR ++SRF DL+GE ++HF+ VSSFSEYTV+DIA++ K+DP +PPNRACL 
Sbjct: 119 FPFKVSPWMPRYESSRFTDLKGEVLYHFLFVSSFSEYTVVDIANITKIDPNIPPNRACLF 178

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
           SCGVSTGVGAAW+TANVE GSTV IFGLG+IGLAVAEGARLCGA+RIIGVD+  +KFEIG
Sbjct: 179 SCGVSTGVGAAWKTANVEKGSTVAIFGLGAIGLAVAEGARLCGASRIIGVDLNPDKFEIG 238

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K+FGVT+FVNS NCG+K V Q+I++MTDGGADYCFECVG ASLV EA+ACCRKGWGKTIV
Sbjct: 239 KKFGVTDFVNSGNCGNKPVKQVIMEMTDGGADYCFECVGAASLVHEAFACCRKGWGKTIV 298

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           LGVD+PGS L+  SF++LHSGK LMGSL+GG+K KSDIPILLKRYMDKEL++DKFVTHEM
Sbjct: 299 LGVDRPGSMLNFLSFDILHSGKSLMGSLYGGVKPKSDIPILLKRYMDKELDVDKFVTHEM 358

Query: 301 KFEEINSAFDLLIKGKCLRCVIWM 324
           +FE+IN AFDLLI+GK LRCV+WM
Sbjct: 359 RFEDINKAFDLLIQGKSLRCVLWM 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238330|ref|NP_199040.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana] gi|75333830|sp|Q9FH04.1|ADHL7_ARATH RecName: Full=Alcohol dehydrogenase-like 7 gi|10177010|dbj|BAB10198.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|19698971|gb|AAL91221.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|22136298|gb|AAM91227.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|332007405|gb|AED94788.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/322 (76%), Positives = 282/322 (87%), Gaps = 1/322 (0%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
           PA FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC +CV C+S K NLCS FPFK
Sbjct: 69  PACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFK 128

Query: 65  ISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
           +SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCG
Sbjct: 129 VSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCG 188

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
           VSTGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++F
Sbjct: 189 VSTGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKF 248

Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 243
           GVTEFVNS  C    VS++I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGV
Sbjct: 249 GVTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGV 308

Query: 244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 303
           D+PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFE
Sbjct: 309 DKPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFE 368

Query: 304 EINSAFDLLIKGKCLRCVIWMG 325
           EIN AF LL++GKC+RCV+WMG
Sbjct: 369 EINDAFQLLLEGKCIRCVLWMG 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501338|ref|XP_003519482.1| PREDICTED: alcohol dehydrogenase-like 7-like [Glycine max]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/324 (75%), Positives = 285/324 (87%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           M+D PA++PRILGHEAIGVVESVGE+V  V +GDVV+P FL DC EC+ C+S K NLCS 
Sbjct: 62  MQDHPAIYPRILGHEAIGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLCSK 121

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
           FPF++SPWMPR  TSRF DL+GE IHHF+SVSSFSEYTV+DIAH++K+DP +PPNRACL+
Sbjct: 122 FPFEVSPWMPRYATSRFTDLKGEIIHHFLSVSSFSEYTVVDIAHLIKIDPAIPPNRACLI 181

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
           SCG+S G+GAAWR A VE GSTV IFGLGSIGLAVAEGARLCGAT+IIGVDV  E++EIG
Sbjct: 182 SCGISAGIGAAWRAAGVEPGSTVAIFGLGSIGLAVAEGARLCGATKIIGVDVNPERYEIG 241

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           KRFG+T+FV+S  C +KSVSQ+II+MT GGADYCFECVG+ASL+ EAYA CRKGWGKTIV
Sbjct: 242 KRFGLTDFVHSGECENKSVSQVIIEMTGGGADYCFECVGMASLMHEAYASCRKGWGKTIV 301

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           LGVD+PGS+L+LS  EVL SGK L G LFGGLK KS +PILLKRYMDKEL LD+FVTHEM
Sbjct: 302 LGVDKPGSKLNLSCSEVLVSGKSLRGCLFGGLKPKSHVPILLKRYMDKELNLDEFVTHEM 361

Query: 301 KFEEINSAFDLLIKGKCLRCVIWM 324
           +F++IN AFDLLI+G+CLRCVIWM
Sbjct: 362 EFKDINKAFDLLIEGQCLRCVIWM 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7705214|gb|AAB33480.2| alcohol dehydrogenase ADH [Solanum lycopersicum]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 241/324 (74%), Positives = 285/324 (87%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           +K+FP  FPRILGHEA GVVESVGE+VD + EGD V+P FL DC +CV C+SKK NLCS 
Sbjct: 63  LKEFPGCFPRILGHEAFGVVESVGEDVDELKEGDSVVPIFLPDCMDCVDCKSKKSNLCSK 122

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
           FP ++SP + R+ TSRF +  GET+HHF+ +SSFSEYTV+D+ +V K+DP +PPNRACLL
Sbjct: 123 FPIQVSPLLHRNDTSRFSNAAGETLHHFLYISSFSEYTVVDVVNVTKIDPEIPPNRACLL 182

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
           SCGVSTGVGAAW+TANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD+ S KFEIG
Sbjct: 183 SCGVSTGVGAAWKTANVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDINSNKFEIG 242

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K+FG+TEFVNSK+C DK +SQ+II+MTDGGADYCFECVGLA+LVQEA+ CCRKGWGKT+V
Sbjct: 243 KQFGITEFVNSKSCVDKPISQVIIEMTDGGADYCFECVGLATLVQEAFTCCRKGWGKTVV 302

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           LGVD+P + L+L+SFEVL S K L G+LFGGLK KSD+PIL+KRY+DKEL+L+KFVTHE+
Sbjct: 303 LGVDKPDAHLNLNSFEVLQSQKTLTGALFGGLKPKSDVPILVKRYLDKELQLNKFVTHEV 362

Query: 301 KFEEINSAFDLLIKGKCLRCVIWM 324
            FE+IN AFDLLI+GK LRCVIWM
Sbjct: 363 NFEDINKAFDLLIQGKSLRCVIWM 386

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795321|ref|XP_002865545.1| hypothetical protein ARALYDRAFT_494804 [Arabidopsis lyrata subsp. lyrata] gi|297311380|gb|EFH41804.1| hypothetical protein ARALYDRAFT_494804 [Arabidopsis lyrata subsp. lyrata]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/322 (75%), Positives = 283/322 (87%), Gaps = 1/322 (0%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
           PA FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC ECV C+S+K NLCS FPFK
Sbjct: 69  PACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGECVDCKSQKSNLCSKFPFK 128

Query: 65  ISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
           +SPWMPR + +SRF DL G+T+ HF++VSSFSEYTVLD+A++VK+D ++PP+RACLLSCG
Sbjct: 129 VSPWMPRYENSSRFTDLNGQTLFHFLNVSSFSEYTVLDVANIVKIDSSIPPSRACLLSCG 188

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
           VSTGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G+ F
Sbjct: 189 VSTGVGAAWETAKVEQGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPAKFQVGQNF 248

Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 243
           G+TEFVNS  C  KSVS++I +MT GGADYCFECVG +SLVQEAYACCR+GWGKTI LGV
Sbjct: 249 GITEFVNSMTCEKKSVSEVINEMTGGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGV 308

Query: 244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 303
           D+PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IP+LLKRY+  ELELDKFVTHEMKFE
Sbjct: 309 DKPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPLLLKRYLSNELELDKFVTHEMKFE 368

Query: 304 EINSAFDLLIKGKCLRCVIWMG 325
           EIN AF LL++GKC+RCV+WMG
Sbjct: 369 EINDAFQLLLEGKCIRCVLWMG 390

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554321|ref|XP_003545496.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 2 [Glycine max]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/324 (75%), Positives = 284/324 (87%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           M+  PA+ PRILGHEA+GVVESVGE+V  V +GDVV+P FL DC EC+ C+S K NLCS 
Sbjct: 63  MEVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLCSK 122

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
           FPF++SPWMPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRACLL
Sbjct: 123 FPFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRACLL 182

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
           SCGVSTGVGAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E G
Sbjct: 183 SCGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYETG 242

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K+FG+T+FV++    +KSVSQ+II+MT GGADYCFECVG+A+LVQEAYA CRKGWGK IV
Sbjct: 243 KKFGLTDFVHAGESENKSVSQVIIEMTGGGADYCFECVGMATLVQEAYASCRKGWGKAIV 302

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           LGV++PGS LSLS  EVLHSGK L+G LFGGLK KSD+PILLKRYMDKEL LD+FVTHE+
Sbjct: 303 LGVEKPGSMLSLSCNEVLHSGKSLVGCLFGGLKPKSDVPILLKRYMDKELNLDEFVTHEV 362

Query: 301 KFEEINSAFDLLIKGKCLRCVIWM 324
           +F++IN AFDLLI+G+CLRCVIWM
Sbjct: 363 EFKDINKAFDLLIEGQCLRCVIWM 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554319|ref|XP_003545495.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 1 [Glycine max]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/324 (75%), Positives = 284/324 (87%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           M+  PA+ PRILGHEA+GVVESVGE+V  V +GDVV+P FL DC EC+ C+S K NLCS 
Sbjct: 62  MEVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLCSK 121

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
           FPF++SPWMPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRACLL
Sbjct: 122 FPFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRACLL 181

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
           SCGVSTGVGAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E G
Sbjct: 182 SCGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYETG 241

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K+FG+T+FV++    +KSVSQ+II+MT GGADYCFECVG+A+LVQEAYA CRKGWGK IV
Sbjct: 242 KKFGLTDFVHAGESENKSVSQVIIEMTGGGADYCFECVGMATLVQEAYASCRKGWGKAIV 301

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           LGV++PGS LSLS  EVLHSGK L+G LFGGLK KSD+PILLKRYMDKEL LD+FVTHE+
Sbjct: 302 LGVEKPGSMLSLSCNEVLHSGKSLVGCLFGGLKPKSDVPILLKRYMDKELNLDEFVTHEV 361

Query: 301 KFEEINSAFDLLIKGKCLRCVIWM 324
           +F++IN AFDLLI+G+CLRCVIWM
Sbjct: 362 EFKDINKAFDLLIEGQCLRCVIWM 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574454|ref|XP_003555362.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 1 [Glycine max]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/324 (74%), Positives = 283/324 (87%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           ++D PA+FPRILGHEA GVVESVG++V  V +GDVVIP  L +C EC+ C+S K N C+ 
Sbjct: 67  LQDPPAIFPRILGHEATGVVESVGKDVTEVTKGDVVIPVILPECGECIDCKSTKSNRCTN 126

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
           FPFK+SPWMPRD T+RF    GE I+HF+ +SSFSEYTV+DIA+++K+DP +PP+RACLL
Sbjct: 127 FPFKVSPWMPRDGTTRFTGQNGEIIYHFLFISSFSEYTVVDIANLIKIDPEIPPDRACLL 186

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
            CGVSTGVGAAWRTA VE GSTV IFGLGSIGLAVAEGARLCGATRIIGVD+  EKFEIG
Sbjct: 187 GCGVSTGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATRIIGVDINPEKFEIG 246

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K+FGVT+FVN+  CG K V Q+II++TDGGADYCFECVG+ASLV EAYA CRKGWGKTIV
Sbjct: 247 KKFGVTDFVNAGECGGKPVGQVIIEITDGGADYCFECVGMASLVHEAYASCRKGWGKTIV 306

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           LGVD+PG++++LSS+EVLH GK LMGSLFGGLK KS +PILLKRYMDKEL+LDKFVTHE+
Sbjct: 307 LGVDKPGARINLSSYEVLHDGKSLMGSLFGGLKPKSHVPILLKRYMDKELQLDKFVTHEV 366

Query: 301 KFEEINSAFDLLIKGKCLRCVIWM 324
           +F++IN AFDLL KG+CLRCVIWM
Sbjct: 367 EFKDINKAFDLLSKGECLRCVIWM 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574456|ref|XP_003555363.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 2 [Glycine max]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/324 (74%), Positives = 283/324 (87%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           ++D PA+FPRILGHEA GVVESVG++V  V +GDVVIP  L +C EC+ C+S K N C+ 
Sbjct: 64  LQDPPAIFPRILGHEATGVVESVGKDVTEVTKGDVVIPVILPECGECIDCKSTKSNRCTN 123

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
           FPFK+SPWMPRD T+RF    GE I+HF+ +SSFSEYTV+DIA+++K+DP +PP+RACLL
Sbjct: 124 FPFKVSPWMPRDGTTRFTGQNGEIIYHFLFISSFSEYTVVDIANLIKIDPEIPPDRACLL 183

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
            CGVSTGVGAAWRTA VE GSTV IFGLGSIGLAVAEGARLCGATRIIGVD+  EKFEIG
Sbjct: 184 GCGVSTGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATRIIGVDINPEKFEIG 243

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K+FGVT+FVN+  CG K V Q+II++TDGGADYCFECVG+ASLV EAYA CRKGWGKTIV
Sbjct: 244 KKFGVTDFVNAGECGGKPVGQVIIEITDGGADYCFECVGMASLVHEAYASCRKGWGKTIV 303

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           LGVD+PG++++LSS+EVLH GK LMGSLFGGLK KS +PILLKRYMDKEL+LDKFVTHE+
Sbjct: 304 LGVDKPGARINLSSYEVLHDGKSLMGSLFGGLKPKSHVPILLKRYMDKELQLDKFVTHEV 363

Query: 301 KFEEINSAFDLLIKGKCLRCVIWM 324
           +F++IN AFDLL KG+CLRCVIWM
Sbjct: 364 EFKDINKAFDLLSKGECLRCVIWM 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.984	0.823	0.717	2.6e-127
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.981	0.822	0.562	3.8e-94
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.969	0.814	0.553	2.1e-93
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.975	0.823	0.556	2.7e-91
TAIR|locus:2184575	381	AT5G24760 [Arabidopsis thalian	0.969	0.829	0.451	7.5e-73
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.972	0.843	0.425	1.4e-69
TIGR_CMR|SO_2054	379	SO_2054 "alcohol dehydrogenase	0.969	0.833	0.420	2.7e-68
TIGR_CMR|SO_A0161	376	SO_A0161 "zinc-containing alco	0.969	0.840	0.417	3.5e-68
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.969	0.833	0.421	5.6e-68
DICTYBASE|DDB_G0281865	379	adh5 "alcohol dehydrogenase, c	0.975	0.839	0.431	7.2e-68

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 231/322 (71%), Positives = 266/322 (82%)

Query:     5 PAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK 64
             PA FPRILGHEAI                   +P F+ DC +CV C+S K NLCS FPFK
Sbjct:    69 PACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFK 128

Query:    65 ISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
             +SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCG
Sbjct:   129 VSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCG 188

Query:   124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
             VSTGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++F
Sbjct:   189 VSTGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKF 248

Query:   184 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 243
             GVTEFVNS  C    VS++I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGV
Sbjct:   249 GVTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGV 308

Query:   244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 303
             D+PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFE
Sbjct:   309 DKPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFE 368

Query:   304 EINSAFDLLIKGKCLRCVIWMG 325
             EIN AF LL++GKC+RCV+WMG
Sbjct:   369 EINDAFQLLLEGKCIRCVLWMG 390

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 181/322 (56%), Positives = 231/322 (71%)

Query:     6 AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK- 64
             A FPRILGHEA+                   +P F   C EC  C+S K N C+ F    
Sbjct:    69 ARFPRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDF 128

Query:    65 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 124
             +S       TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGV
Sbjct:   129 LSNTRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGV 188

Query:   125 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 184
             STG+GAAW+ ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+GK+FG
Sbjct:   189 STGIGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFG 248

Query:   185 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 244
              T+F+NS  CG+  +S++I +MT GG DY FECVGL SL+ EA++  R G GKT+VLG+D
Sbjct:   249 FTDFINSTLCGENKISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGID 308

Query:   245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 304
             +  + +SL SF++L  G+ + GSLFGGLK K DIPIL+  Y+ KEL LD F+THE+KFEE
Sbjct:   309 KHLTPVSLGSFDLLR-GRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEE 367

Query:   305 INSAFDLLIKGKCLRCVIWMGE 326
             IN AFDLL++GK LRC++WM +
Sbjct:   368 INKAFDLLVQGKSLRCILWMNK 389

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 176/318 (55%), Positives = 228/318 (71%)

Query:     8 FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-IS 66
             FPRILGHEA+                   +P F   C EC  C+S K N C  +    IS
Sbjct:    70 FPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFIS 129

Query:    67 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 126
                     SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVST
Sbjct:   130 NTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVST 189

Query:   127 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 186
             G+GAAW+ ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+GK+FG T
Sbjct:   190 GIGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFT 249

Query:   187 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 246
             +F+N   CG+K +S++I +MT+GG DY FECVGLASL+ EA+   R G GKT++LG+++ 
Sbjct:   250 DFINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKH 309

Query:   247 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 306
              + +SL SF++L  G+++ GSLFGGLK+K DIPIL+  Y+ KEL LD F+THE+ F+EIN
Sbjct:   310 AAPISLGSFDLLR-GRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEIN 368

Query:   307 SAFDLLIKGKCLRCVIWM 324
              AF LL +GK LRC++WM
Sbjct:   369 KAFALLEEGKSLRCILWM 386

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 178/320 (55%), Positives = 227/320 (70%)

Query:     6 AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK- 64
             A FPRILGHEA+                   +P F   C EC  C S K N C+ +    
Sbjct:    66 ARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDY 125

Query:    65 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 124
             +S       TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V
Sbjct:   126 LSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSV 185

Query:   125 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 184
             +TG+GAAW+ A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIGKRFG
Sbjct:   186 ATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFG 245

Query:   185 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 244
             +T+FVN   CG+K++S++I +MTD GADY FEC+GLASL++EA+   R G GKTIVLG++
Sbjct:   246 ITDFVNPALCGEKTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGME 305

Query:   245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 304
             Q    +SL S+++L  G+ + G+LFGGLK K DIPIL+ RY+ KEL L+  +THE+ FEE
Sbjct:   306 QKALPISLGSYDLLR-GRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEE 364

Query:   305 INSAFDLLIKGKCLRCVIWM 324
             IN AF LL +G  +RC+IWM
Sbjct:   365 INKAFHLLAEGNSIRCIIWM 384

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 144/319 (45%), Positives = 203/319 (63%)

Query:     6 AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKI 65
             ++ PRI GHEA                    +  F  +C  C  C S K N+C     + 
Sbjct:    64 SLLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMER 123

Query:    66 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 125
                M  DQ +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+
Sbjct:   124 KGLMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVA 182

Query:   126 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 185
              G+GAAW  A+V+ GS+VVIFGLG++GL+VA+GA+L GA +I+GVD+   K E  K FGV
Sbjct:   183 AGLGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGV 242

Query:   186 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 245
             T+F+NS +  +  + Q+I  MT GGAD+ FECVG   +   A   C  GWG T+ LGV +
Sbjct:   243 TDFINSNDLSEP-IPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPK 301

Query:   246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 305
                ++S + + +  SGK L G+LFGG K KSD+P L+ +YM+KE+ +D+F+TH + F+EI
Sbjct:   302 AKPEVS-AHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEI 360

Query:   306 NSAFDLLIKGKCLRCVIWM 324
             N AF L+ +GKCLRCV+ M
Sbjct:   361 NKAFVLMREGKCLRCVLHM 379

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 136/320 (42%), Positives = 195/320 (60%)

Query:     3 DFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFP 62
             D   +FP ILGHE                     IP ++  C EC  C++ K NLC    
Sbjct:    58 DPEGLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIR 117

Query:    63 FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                   +  D TSRF   +G+ + HF+  S+FSEYTV+    + KVD   P ++ CLL C
Sbjct:   118 VTQGQGLMPDNTSRFT-CKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGC 176

Query:   123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
             G+STG GAA  TA VE GST  +FGLG++GLAV  G +  GATRIIG+DV  +KFEI K+
Sbjct:   177 GISTGYGAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKK 236

Query:   183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
             FG TEFVN K+   K + ++++++TDGG DY FEC+G   +++ A   C KGWG ++++G
Sbjct:   237 FGATEFVNPKD-HSKPIQEVLVELTDGGVDYSFECIGNVGIMRAALEACHKGWGTSVIIG 295

Query:   243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
             V   G ++S   F+++ +G+   G+ FGG K+   +P L+  YM+K+L +D+FVTH + F
Sbjct:   296 VAGAGQEISTRPFQLV-TGRTWKGTAFGGWKSVESVPKLVNDYMNKKLMVDEFVTHTLPF 354

Query:   303 EEINSAFDLLIKGKCLRCVI 322
              +IN AFDL+  GK +R V+
Sbjct:   355 AQINEAFDLMHAGKSIRAVL 374

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TIGR_CMR|SO_2054 SO_2054 "alcohol dehydrogenase class III" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 135/321 (42%), Positives = 196/321 (61%)

Query:     3 DFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFP 62
             D   VFP ILGHE                     IP +  +C EC  C S K NLC    
Sbjct:    59 DPEGVFPAILGHEGGGIVEQVGEGVTSVQVGDHVIPLYTPECGECKFCLSGKTNLCQKIR 118

Query:    63 FKISPWMPRDQTSRF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
                   +  D T+RF KD  G+ I H++  S+FSEYTVL    + KV+ T P    CLL 
Sbjct:   119 ATQGKGLMPDGTTRFYKD--GQPIFHYMGCSTFSEYTVLPEISLAKVNKTAPLKEICLLG 176

Query:   122 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
             CGV+TG+GA   TA VE G+TV IFGLG IGL+   GA +  A+RII +D+   KFE+ +
Sbjct:   177 CGVTTGMGAVMNTAKVEAGATVAIFGLGGIGLSAIIGATMAKASRIIAIDINESKFELAR 236

Query:   182 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
             + G T+ +N KN  DK + ++I++MTDGG DY FEC+G  ++++ A  CC KGWG+++++
Sbjct:   237 KLGATDCINPKNF-DKPIQEVIVEMTDGGVDYSFECIGNVNVMRSALECCHKGWGESVII 295

Query:   242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
             GV   G ++S   F+++ +G++  GS FGG+K +S +P ++++Y+  E +LD F+TH M 
Sbjct:   296 GVAGAGQEISTRPFQLV-TGRVWRGSAFGGVKGRSQLPKIVEQYLAGEFKLDDFITHTMG 354

Query:   302 FEEINSAFDLLIKGKCLRCVI 322
              E++N AFDL+ +GK +R VI
Sbjct:   355 LEQVNEAFDLMHEGKSIRSVI 375

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

TIGR_CMR|SO_A0161 SO_A0161 "zinc-containing alcohol dehydrogenase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 134/321 (41%), Positives = 196/321 (61%)

Query:     3 DFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFP 62
             D   +FP ILGHE                     IP +  +C EC  C+S K NLC    
Sbjct:    56 DPEGIFPCILGHEGGGIVESIGEGVTSVQVGDHVIPLYTPECGECKFCKSGKTNLCQKIR 115

Query:    63 FKISPWMPRDQTSRF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
                   +  D TSRF KD  G+ I+H++  S+FSEYTVL    + KV+P  P    CLL 
Sbjct:   116 ETQGKGLMPDGTSRFSKD--GQIIYHYMGTSTFSEYTVLPEISLAKVNPDAPLEEVCLLG 173

Query:   122 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
             CGV+TG+GA   TA VE G+TV IFG+G IGL+   GA +  A+RII +D+   KFE+  
Sbjct:   174 CGVTTGMGAVMNTAKVEEGATVAIFGMGGIGLSAVIGATMAKASRIIVIDINESKFELAG 233

Query:   182 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
             + G T+F+N K+  DK +  +I+++TDGG DY FEC+G  ++++ A  CC KGWG+++V+
Sbjct:   234 KLGATDFINPKDY-DKPIQDVIVELTDGGVDYSFECIGNVNVMRSALECCHKGWGESVVI 292

Query:   242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
             GV   G ++S   F+++ +G++  GS FGG+K +S++P  ++RY+  E +L  F+TH M 
Sbjct:   293 GVAGAGQEISTRPFQLV-TGRVWKGSAFGGVKGRSELPEYVERYLAGEFKLSDFITHTMS 351

Query:   302 FEEINSAFDLLIKGKCLRCVI 322
              E++N AFDL+ +GK +R VI
Sbjct:   352 LEQVNDAFDLMHQGKSIRTVI 372

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 135/320 (42%), Positives = 191/320 (59%)

Query:     7 VFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKIS 66
             +FPRI GHEA                    +P F  +C EC  C S++ N+C        
Sbjct:    62 LFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTE 121

Query:    67 PW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 125
                M  D  SRF  + G+ I+HF+  S+FSEYTV+    V K++P  P ++ C++SCG+S
Sbjct:   122 RGGMIHDGESRFS-INGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLS 180

Query:   126 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 185
             TG+GA    A  + G +V IFGLG++GL  AEGAR+ GA+RIIGVD  S++F+  K FGV
Sbjct:   181 TGLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGV 240

Query:   186 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 245
             TE VN K+  DK + Q+I +MTDGG D   EC G    + +A+ C   GWG  +++GV  
Sbjct:   241 TECVNPKD-HDKPIQQVIAEMTDGGVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPS 299

Query:   246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 305
                         L+  + L G+ FG  K K+DIP ++++YM+KELEL+KF+TH + F EI
Sbjct:   300 KDDAFKTHPMNFLNE-RTLKGTFFGNYKPKTDIPGVVEKYMNKELELEKFITHTVPFSEI 358

Query:   306 NSAFDLLIKGKCLRCVIWMG 325
             N AFD ++KG+ +RC+I MG
Sbjct:   359 NKAFDYMLKGESIRCIITMG 378

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

DICTYBASE|DDB_G0281865 adh5 "alcohol dehydrogenase, class 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 139/322 (43%), Positives = 200/322 (62%)

Query:     3 DFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFP 62
             D   +FP ILGHE                     IP ++ +C  C  C S K NLCS   
Sbjct:    58 DPEGIFPCILGHEGGGIVESIGEGVTSVKVGDHVIPLYIPECGTCKFCTSNKTNLCSKIR 117

Query:    63 FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                      D T+RFK  +G+ I HF+  S+FS+YTVL       V    P ++ CLL C
Sbjct:   118 ITQGKGQMPDGTTRFK-CKGKEIFHFMGTSTFSQYTVLPEISCCVVREDAPLDKVCLLGC 176

Query:   123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
             G++TG GAA  TA VE GSTV IFGLG++GL+VA+GA  CGA RIIG+D    KF  GK 
Sbjct:   177 GITTGFGAAKITAKVEEGSTVAIFGLGAVGLSVAQGAVDCGAKRIIGIDNNETKFGPGKD 236

Query:   183 FGVTEFVN-SKNCGD-KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
             FG TEF+N SK+  + K++ Q ++D+TDGG DY FEC+G  ++++ A  CC KGWG + +
Sbjct:   237 FGCTEFINPSKDLPEGKTIQQHLVDITDGGVDYSFECIGNVNVMRAALECCHKGWGVSTI 296

Query:   241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
             +GV   G+++S   F+++ +G++  GS FGG+K++S +P ++ +YMDK+L++D++VT   
Sbjct:   297 VGVAPAGAEISTRPFQLV-TGRVWKGSAFGGVKSRSQLPSIIDKYMDKKLKVDEYVTFTY 355

Query:   301 KFEEINSAFDLLIKGKCLRCVI 322
                EIN+AFD++ +GK LR V+
Sbjct:   356 PLNEINTAFDVMHEGKSLRSVV 377

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P19854	ADHX_HORSE	1, ., 1, ., 1, ., 2, 8, 4	0.4539	0.9570	0.8342	yes	no
A2XAZ3	ADHX_ORYSI	1, ., 1, ., 1, ., 2, 8, 4	0.5062	0.9754	0.8346	N/A	no
P11766	ADHX_HUMAN	1, ., 1, ., 1, ., 2, 8, 4	0.4437	0.9723	0.8475	yes	no
P46415	ADHX_DROME	1, ., 1, ., 1, ., 2, 8, 4	0.4299	0.9754	0.8390	yes	no
Q3ZC42	ADHX_BOVIN	1, ., 1, ., 1, ., 2, 8, 4	0.4444	0.9570	0.8342	yes	no
P32771	FADH_YEAST	1, ., 1, ., 1, ., -	0.4355	0.9907	0.8367	yes	no
Q9FH04	ADHL7_ARATH	1, ., 1, ., 1, ., 1	0.7670	0.9846	0.8230	yes	no
Q54TC2	ADHX_DICDI	1, ., 1, ., 1, ., 2, 8, 4	0.4658	0.9754	0.8390	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.976
4th Layer	1.1.1.1	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015544001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (354 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036847001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (485 aa)						•			0.899
	GSVIVG00035907001	SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (215 aa)						•			0.899
	GSVIVG00034061001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (450 aa)						•			0.899
	GSVIVG00028844001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (538 aa)						•			0.899
	GSVIVG00024617001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (485 aa)						•			0.899
	GSVIVG00024065001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (607 aa)						•			0.899
	GSVIVG00020768001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (531 aa)						•			0.899
	GSVIVG00019283001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (549 aa)						•			0.899
	GSVIVG00016425001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (362 aa)						•			0.899
	GSVIVG00016121001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (511 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-175
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-137
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-135
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-126
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	1e-119
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-114
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	1e-111
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	1e-109
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-109
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	1e-103
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	5e-72
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	5e-69
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	6e-68
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	2e-56
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	9e-46
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	1e-44
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	4e-43
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	2e-39
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	7e-38
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	1e-35
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-35
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-35
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	9e-35
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	3e-33
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	3e-33
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	5e-33
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	6e-33
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	9e-33
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	2e-30
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	2e-29
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	2e-28
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	7e-28
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	3e-27
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	5e-27
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	6e-26
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	7e-25
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	3e-24
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	3e-23
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-22
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	8e-22
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	9e-22
cd05281	341	cd05281, TDH, Threonine dehydrogenase	7e-21
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	7e-21
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	2e-20
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	3e-20
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	1e-19
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	2e-19
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	2e-18
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	5e-18
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	3e-17
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	1e-16
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	2e-16
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	3e-16
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	5e-16
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	9e-16
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	1e-14
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	6e-14
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	3e-13
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	5e-13
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	1e-12
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	2e-12
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	4e-11
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	7e-11
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	2e-10
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	5e-10
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	6e-10
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-09
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	2e-09
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-09
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	8e-09
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	1e-08
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	1e-08
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	5e-08
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	7e-08
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	8e-08
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	5e-07
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	6e-07
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	7e-07
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	1e-05
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	7e-05
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	7e-05
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	1e-04
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	1e-04
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-04
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	3e-04
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	4e-04
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	4e-04
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	5e-04
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	0.003

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  490 bits (1264), Expect = e-175
 Identities = 171/323 (52%), Positives = 221/323 (68%), Gaps = 4/323 (1%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
           K    +FPRILGHEA G+VESVGE V  +  GD V+P F  +C EC  C+S+K N+C   
Sbjct: 50  KGQTPLFPRILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLL 109

Query: 62  PFKISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                   M  D  SRF    G+ I+HFV  S+FSEYTV+ +  V K++P  P ++ CLL
Sbjct: 110 RINTDRGVMINDGKSRFSI-NGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLL 168

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
           SCGVSTG+GAAW  A V+ GSTV IFGLG++GLAVAEGAR+ GA+RIIGVD+   KFE  
Sbjct: 169 SCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQA 228

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K+FGVTEFVN K+  DK V ++I +MT GG DY FEC G    +  A+ C   GWG T++
Sbjct: 229 KKFGVTEFVNPKDH-DKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVL 287

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           LGV    +  S     +L+ G+ L G+LFGG K K+D+P L+++YM KELEL+KF+THE+
Sbjct: 288 LGVPHKDAVFSTHPMNLLN-GRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHEL 346

Query: 301 KFEEINSAFDLLIKGKCLRCVIW 323
            F EIN AFDLL+KG+CLRC++ 
Sbjct: 347 PFSEINKAFDLLLKGECLRCILH 369

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  394 bits (1014), Expect = e-137
 Identities = 162/319 (50%), Positives = 217/319 (68%), Gaps = 5/319 (1%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
              +FP ILGHE  G+VESVGE V  +  GD VIP F+  C EC  CRS K NLC  +  
Sbjct: 51  KATLFPVILGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRA 110

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
             S  MP D TSRF   +G+ I+HF+  S+FS+YTV+D  +V K+DP  P    CLL CG
Sbjct: 111 NESGLMP-DGTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCG 168

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
            STG GAAW TA VE GSTV +FGLG++GL+   GA++ GA+RIIGVD+  +KFE  K F
Sbjct: 169 FSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF 228

Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 243
           G T+F+N K+  DK VS++I +MT GG DY FEC G A L+ EA    + GWG ++V+GV
Sbjct: 229 GATDFINPKDS-DKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGV 287

Query: 244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 303
             PG++LS+  F+++  G+   GS FGG K++SD+P L+ +YM+K+ +LD+ +TH + FE
Sbjct: 288 -PPGAELSIRPFQLI-LGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFE 345

Query: 304 EINSAFDLLIKGKCLRCVI 322
           EIN  FDL+  G+C+R VI
Sbjct: 346 EINKGFDLMKSGECIRTVI 364

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  388 bits (999), Expect = e-135
 Identities = 154/327 (47%), Positives = 220/327 (67%), Gaps = 15/327 (4%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
            D   +FP ILGHE  G+VESVGE V  V  GD VIP +  +C EC  C+S K NLC   
Sbjct: 50  ADPEGLFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQ-- 107

Query: 62  PFKISPW-----MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVL-DIAHVVKVDPTVPPN 115
             KI        MP D TSRF   +G+ I+HF+  S+FSEYTV+ +I+ V K++P  P +
Sbjct: 108 --KIRATQGKGLMP-DGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEIS-VAKINPEAPLD 162

Query: 116 RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 175
           + CLL CGV+TG GA   TA VE GSTV +FGLG++GLAV +GA+  GA+RIIG+D+  +
Sbjct: 163 KVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPD 222

Query: 176 KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW 235
           KFE+ K+FG T+ VN K+  DK + Q++++MTDGG DY FEC+G   +++ A   C KGW
Sbjct: 223 KFELAKKFGATDCVNPKDH-DKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGW 281

Query: 236 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF 295
           G ++++GV   G ++S   F+ L +G++  G+ FGG K++S +P L++ YM  ++++D+F
Sbjct: 282 GTSVIIGVAAAGQEISTRPFQ-LVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEF 340

Query: 296 VTHEMKFEEINSAFDLLIKGKCLRCVI 322
           +TH M  +EIN AFDL+  GK +R V+
Sbjct: 341 ITHTMPLDEINEAFDLMHAGKSIRTVV 367

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  366 bits (941), Expect = e-126
 Identities = 165/320 (51%), Positives = 213/320 (66%), Gaps = 8/320 (2%)

Query: 7   VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF---PF 63
            +PRILGHEA G+VESVGE V+ +  GD VIP F  +C +C  C+  K NLC  +   PF
Sbjct: 64  AYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPF 123

Query: 64  KISPWMPRDQTSRFKDLR-GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
           K    M  D  +RF     G+ I+HF++ S+F+EYTVLD A VVK+DP  P  +  LLSC
Sbjct: 124 KSV--MVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSC 181

Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
           GVSTGVGAAW TANV+ GS+V IFGLG++GLAVAEGAR  GA++IIGVD+  EKFE GK 
Sbjct: 182 GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
            G+T+F+N K+  DK V + I +MT GG DY FEC G   +++EA+     GWG T++LG
Sbjct: 242 MGITDFINPKDS-DKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLG 300

Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
           +      L L   E L  G+ + GS+FG  K KS +P L K+ M   + LD F+THE+ F
Sbjct: 301 IHPTPKMLPLHPME-LFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPF 359

Query: 303 EEINSAFDLLIKGKCLRCVI 322
           E+IN AF LL  GK LRC++
Sbjct: 360 EKINEAFQLLEDGKALRCLL 379

Length = 381

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  347 bits (891), Expect = e-119
 Identities = 159/319 (49%), Positives = 218/319 (68%), Gaps = 3/319 (0%)

Query: 6   AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 65
           A+FPRI GHEA G+VES+GE V    +GD V+  F  +C  C  C S K N+C     + 
Sbjct: 61  ALFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLER 120

Query: 66  SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 125
              M  DQ +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+
Sbjct: 121 KGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVA 179

Query: 126 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 185
            G+GAAW  A+V  GS+VVIFGLG++GL+VA+GA+L GA++IIGVD+  EK E  K FGV
Sbjct: 180 AGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV 239

Query: 186 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 245
           T+F+N  +   + + Q+I  MT GGADY FECVG   +   A   C  GWG T+ LGV +
Sbjct: 240 TDFINPNDL-SEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPK 298

Query: 246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 305
              ++S + + +  SG+ L GSLFGG K KSD+P L+ +YM+KE+ +D+F+TH + F+EI
Sbjct: 299 AKPEVS-AHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEI 357

Query: 306 NSAFDLLIKGKCLRCVIWM 324
           N AF+L+ +GKCLRCVI M
Sbjct: 358 NKAFELMREGKCLRCVIHM 376

Length = 378

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  334 bits (860), Expect = e-114
 Identities = 145/320 (45%), Positives = 199/320 (62%), Gaps = 5/320 (1%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP 62
           D P  FP +LGHE  G+VE+VGE V  V  GD VI  F  +C +C  C S K NLC A  
Sbjct: 50  DDPEGFPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIR 109

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                    D T+R     G  ++H++  S+F+EYTV+    +VK+DP  P  +ACLL C
Sbjct: 110 ATQGKGTMPDGTTRLSG-NGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGC 168

Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
           GV+TG+GA   TA VE G TV +FGLG +GLA  +GA+  GA RII VD+  EK E+ K+
Sbjct: 169 GVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
           FG T FVN K   D  V + I+++TDGGADY FECVG   ++++A     +  G ++++G
Sbjct: 229 FGATHFVNPKEVDD--VVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIG 285

Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
           V   G ++S   F+ L +G++  GS FGG + +SDIP L+  YM  +L LD+ VTH +  
Sbjct: 286 VAGAGQEISTRPFQ-LVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPL 344

Query: 303 EEINSAFDLLIKGKCLRCVI 322
           E+IN AFDL+ +GK +R VI
Sbjct: 345 EDINEAFDLMHEGKSIRSVI 364

Length = 366

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  328 bits (843), Expect = e-111
 Identities = 136/319 (42%), Positives = 192/319 (60%), Gaps = 3/319 (0%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
               FP ILGHEA G+VESVGE V  V  GD VIP F+  C +C  C + + NLC     
Sbjct: 56  LVTPFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDL 115

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                + +D TSRF   +G+ IHHF+  S+FSEYTV+D   V K+D   P  + CL+ CG
Sbjct: 116 GKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCG 174

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
            STG GAA  TA V  GST  +FGLG +GL+   G +  GA+RII VD+  +KF   K  
Sbjct: 175 FSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKEL 234

Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 243
           G TE +N ++   K + +++ +MTDGG D+ FE +G    ++ A A C +G+G ++++GV
Sbjct: 235 GATECINPQDY-KKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGV 293

Query: 244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 303
                 LS++   +L +G+   G++FGG K+K  +P L+  YM K+  LD  +TH + FE
Sbjct: 294 PPSSQNLSINPMLLL-TGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFE 352

Query: 304 EINSAFDLLIKGKCLRCVI 322
           +IN  FDLL  GK +R V+
Sbjct: 353 KINEGFDLLRSGKSIRTVL 371

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  322 bits (828), Expect = e-109
 Identities = 149/323 (46%), Positives = 211/323 (65%), Gaps = 3/323 (0%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
            D   VFP ILGHE  G+VE+VGE V  V  GD VIP + A+C EC  C S K NLC A 
Sbjct: 49  ADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAV 108

Query: 62  PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
                  +  D TSRF    G+ I+H++  S+FSEYTV+    + K++P  P    CLL 
Sbjct: 109 RETQGKGLMPDGTSRFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLG 167

Query: 122 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
           CGV+TG+GA   TA VE G TV +FGLG IGL+V +GAR+  A+RII +D+   KFE+ K
Sbjct: 168 CGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAK 227

Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
           + G T+ VN  +  DK + ++I+++TDGG DY FEC+G  ++++ A  CC KGWG++I++
Sbjct: 228 KLGATDCVNPND-YDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIII 286

Query: 242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
           GV   G ++S   F+ L +G++  GS FGG+K ++++P ++++YM  E+ LD FVTH M 
Sbjct: 287 GVAGAGQEISTRPFQ-LVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMP 345

Query: 302 FEEINSAFDLLIKGKCLRCVIWM 324
            E+IN AFDL+ +GK +R VI  
Sbjct: 346 LEDINEAFDLMHEGKSIRTVIHY 368

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  322 bits (826), Expect = e-109
 Identities = 134/321 (41%), Positives = 196/321 (61%), Gaps = 5/321 (1%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS-AF 61
             P   P ILGHE  G+VES+G  V  +  GD VIP F   C +C  C + + NLCS + 
Sbjct: 48  KLPTPLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSR 107

Query: 62  PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
                  M  D TSRF   +G+ IHHF+  S+F+EYTV+    + K+DP  P  + CL+ 
Sbjct: 108 GTNGRGLMS-DGTSRFT-CKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIG 165

Query: 122 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
           CG STG GAA  TA V  GST  +FGLG +GL+V  G +  GA+RII VD+  +KFE  K
Sbjct: 166 CGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAK 225

Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
           + G TE +N ++  DK + +++ +MTDGG DY FE +G A  +++A    R G G ++V+
Sbjct: 226 QLGATECINPRD-QDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVV 284

Query: 242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
           GV   G++ +L   ++L +G+ + G++FGG K+K  +P L+  Y  K+  LD+ +TH + 
Sbjct: 285 GVPPSGTEATLDPNDLL-TGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLP 343

Query: 302 FEEINSAFDLLIKGKCLRCVI 322
           FEEIN  FDL+  G+ +R ++
Sbjct: 344 FEEINDGFDLMRSGESIRTIL 364

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  306 bits (787), Expect = e-103
 Identities = 138/321 (42%), Positives = 183/321 (57%), Gaps = 7/321 (2%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP 62
           D PA  P +LGHE  GVVE VG  V GV  GD V+  ++  C  C  C   + NLC    
Sbjct: 48  DLPAPLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDL-G 106

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
             I      D T RF    GE +     + +F+EYTV+  A VVK+D  +P +RA LL C
Sbjct: 107 AGILGGQLPDGTRRF-TADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGC 165

Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
           GV+TGVGA   TA V  G TV + G G +GL   +GAR+ GA+RII VD + EK E+ +R
Sbjct: 166 GVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR 225

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
           FG T  VN+    +    + + D+TDG GADY FE VG A+ +++A A  RKG G  +V+
Sbjct: 226 FGATHTVNA---SEDDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVV 281

Query: 242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
           G+  PG  +SL + E+  S K L GSL+G    + DIP LL  Y    L+LD+ VT    
Sbjct: 282 GMGPPGETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYS 341

Query: 302 FEEINSAFDLLIKGKCLRCVI 322
            +EIN AF  ++ G+  R VI
Sbjct: 342 LDEINEAFADMLAGENARGVI 362

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  227 bits (580), Expect = 5e-72
 Identities = 116/320 (36%), Positives = 165/320 (51%), Gaps = 5/320 (1%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP 62
           D P   P  LGHEA GVV  VGE V  +  GD V+  F+  C  C  C   +  LC    
Sbjct: 56  DRPRPLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGA 115

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                        R + LRG  I+H + VS+F+EY V+    VVK+D  VP   A L  C
Sbjct: 116 AANGAGTLLSGGRRLR-LRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGC 174

Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
            V TGVGA   TA V  G +V + GLG +GL+   GA   GA++++ VD+  +K  + + 
Sbjct: 175 AVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
            G T  VN+   GD +  + + ++T GG DY FE  G    ++ AY   R+G G T+  G
Sbjct: 235 LGATATVNA---GDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAG 290

Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
           +  P ++LS+ +  ++   + L GS  G    + DIP  L  Y+   L +DK +TH +  
Sbjct: 291 LPDPEARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPL 350

Query: 303 EEINSAFDLLIKGKCLRCVI 322
           +EIN  FD L  G+ +R VI
Sbjct: 351 DEINEGFDRLAAGEAVRQVI 370

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  219 bits (560), Expect = 5e-69
 Identities = 113/319 (35%), Positives = 171/319 (53%), Gaps = 10/319 (3%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
           +P + GHE  GVV  VG  V GV  GD V+  F+  C  C  C +   NLC      ++ 
Sbjct: 55  YPILGGHEGAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTG 114

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
               D T RF    G+ +     + +FSEYTV+  A VVK+D  +P ++ACL+ CGV TG
Sbjct: 115 SQISDGTYRFH-ADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTG 173

Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A   A+V  G TVV+ G+G +G+   +GA + GA ++I VD +  K E   +FG T 
Sbjct: 174 WGSAVNIADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATH 233

Query: 188 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA--SLVQEAYACCRKGWGKTIVLGVD 244
              S     +   Q++ ++T+G GAD     VG      + EA +  RKG G+ +V G+ 
Sbjct: 234 AFASM----EEAVQLVRELTNGQGADKTIITVGEVDGEHIAEALSATRKG-GRVVVTGLG 288

Query: 245 QPG-SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 303
                 + ++ FE+    K L G+LFGG   ++DIP LL+ Y   +L+LD+ +T     +
Sbjct: 289 PMADVDVKVNLFELTLLQKELQGTLFGGANPRADIPRLLELYRAGKLKLDELITRTYTLD 348

Query: 304 EINSAFDLLIKGKCLRCVI 322
           +IN  +  ++ GK +R VI
Sbjct: 349 QINEGYQDMLDGKNIRGVI 367

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  216 bits (552), Expect = 6e-68
 Identities = 109/321 (33%), Positives = 163/321 (50%), Gaps = 9/321 (2%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC-SAFP 62
            P   P +LGHE  GVVE+VG  V G+  GD V+  F A C EC  C S     C + FP
Sbjct: 51  LPTPLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFP 109

Query: 63  FKISPWMPRDQTSRFKDLRGETIH-HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
              S   P D ++      G  +H HF   SSF+ Y V+   +VVKVD  VP      L 
Sbjct: 110 LNFSGRRP-DGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLG 168

Query: 122 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
           CG+ TG GA         GS++ +FG G++GLA    A++ G T II VD++  + E+ K
Sbjct: 169 CGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK 228

Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
             G T  +N K   ++ +   I ++T GG DY  +  G+ +++++A        G   ++
Sbjct: 229 ELGATHVINPK---EEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALV 284

Query: 242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
           G   PG++++L   ++L SGK + G + G    +  IP L++ Y   +   DK VT    
Sbjct: 285 GAPPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTF-YP 343

Query: 302 FEEINSAFDLLIKGKCLRCVI 322
           FE+IN A      GK ++ V+
Sbjct: 344 FEDINQAIADSESGKVIKPVL 364

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  186 bits (474), Expect = 2e-56
 Identities = 109/316 (34%), Positives = 157/316 (49%), Gaps = 14/316 (4%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
           FP +LGHEA GVVE+VGE V  V  GD V+ ++ A C +C  C+  +   C         
Sbjct: 54  FPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYC--------- 104

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
           +   + T +     G  +   + + +F+E T++      KVDP   P  A LL CGV  G
Sbjct: 105 FDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAG 164

Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
           +GAA  T  V+ G +V + G G +G A   GA L GA++II VD+   K E  + FG T 
Sbjct: 165 LGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH 224

Query: 188 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 246
            VNS   G   V + I  +T G GAD   + VG     ++A+   R   G  +++GV  P
Sbjct: 225 TVNSS--GTDPV-EAIRALTGGFGADVVIDAVGRPETYKQAFY-ARDLAGTVVLVGVPTP 280

Query: 247 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 306
              L L   +V   G  L  S +G    + D P+L+  Y+   L LD FVT  +  +++ 
Sbjct: 281 DMTLELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVE 340

Query: 307 SAFDLLIKGKCLRCVI 322
            AFD +  G  LR V+
Sbjct: 341 EAFDKMHAGDVLRSVV 356

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  156 bits (396), Expect = 9e-46
 Identities = 73/283 (25%), Positives = 108/283 (38%), Gaps = 35/283 (12%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
               P   P ILGHE  GVV  VG  V GV  GD V+      C  C  CR         
Sbjct: 22  GYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGG-- 79

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                                   I        F+EY V+   ++V +   +    A LL
Sbjct: 80  ------------------------ILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALL 115

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
              ++T   A  R   ++ G TV++ G G +GL  A+ A+  GA R+I  D   EK E+ 
Sbjct: 116 PEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELA 174

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K  G    ++ K   ++ + + +     GGAD   + VG    + +A    R G G+ +V
Sbjct: 175 KELGADHVIDYK---EEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPG-GRIVV 230

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLK 283
           +G    G         +L     ++GS  G  +   D    L 
Sbjct: 231 VGGT-SGGPPLDDLRRLLFKELTIIGSTGGTRE---DFEEALD 269

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  155 bits (393), Expect = 1e-44
 Identities = 85/319 (26%), Positives = 130/319 (40%), Gaps = 27/319 (8%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 68
             ILGHE +G V  VG  V G   GD V+      C  C  CR+ + NLC    F     
Sbjct: 56  DIILGHEFVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAG 114

Query: 69  MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 128
           +          + G           F+EY  +     +   P      A  L+  ++T  
Sbjct: 115 L-------GGGIDG----------GFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAY 157

Query: 129 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 188
                 A V  G TVV+ G G IGL     A+L GA+ +I VD   E+ E+ K  G  + 
Sbjct: 158 HGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV 217

Query: 189 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
           V +    +      I+++T G GAD   E VG    + +A    R G G  +V+GV   G
Sbjct: 218 VVNP--SEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVY-GG 273

Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             + L +  V+     L GSL      + D    L      +++ +K +TH +  ++   
Sbjct: 274 EDIPLPAGLVVSKELTLRGSLRPS--GREDFERALDLLASGKIDPEKLITHRLPLDDAAE 331

Query: 308 AFDLLIKGK--CLRCVIWM 324
           A++L    K   ++ V+  
Sbjct: 332 AYELFADRKEEAIKVVLKP 350

Length = 350

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  152 bits (385), Expect = 4e-43
 Identities = 97/324 (29%), Positives = 151/324 (46%), Gaps = 15/324 (4%)

Query: 7   VFPR--ILGHEAIGVVESVGENVDGVV---EGDVVIPHFLADCTECVGCRSKKGNLC-SA 60
            FP   +LGHE  G V  VG NV+       GD V+  F+  C +C  C   K NLC   
Sbjct: 50  PFPPPFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDF 109

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
           F +        D T+R   L G  ++ + S+   +EY V+    +  +  ++    + +L
Sbjct: 110 FAYNRLKGTLYDGTTRLFRLDGGPVYMY-SMGGLAEYAVVPATALAPLPESLDYTESAVL 168

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
            C   T  GA    A+V  G TV + G+G +G +  + A+  GA+ II VDV  EK    
Sbjct: 169 GCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKA 228

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTI 239
           K  G T  VN+    D      I ++T G G D   E +G     + A    R G G+ +
Sbjct: 229 KELGATHTVNAAK-ED--AVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAV 284

Query: 240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHE 299
           V+G+   G+   +    ++  G  ++GS   G + + D+P L+      +L+ +  VTH+
Sbjct: 285 VVGLAPGGATAEIPITRLVRRGIKIIGSY--GARPRQDLPELVGLAASGKLDPEALVTHK 342

Query: 300 MKFEEINSAFDLLIKGKC-LRCVI 322
            K EEIN A++ L KG    R ++
Sbjct: 343 YKLEEINEAYENLRKGLIHGRAIV 366

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  141 bits (357), Expect = 2e-39
 Identities = 89/325 (27%), Positives = 141/325 (43%), Gaps = 43/325 (13%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSA 60
           +F A  P + GHE  GVV +VG  V G   GD   V P+    C EC  CR  + NLC  
Sbjct: 47  EFGAAPPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIY--CGECFYCRRGRPNLCEN 104

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL- 119
                                G T +       F+EY V+    V K+   +    A L 
Sbjct: 105 L-----------------TAVGVTRN-----GGFAEYVVVPAKQVYKIPDNLSFEEAALA 142

Query: 120 --LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 177
             LSC V            ++ G +V++FG G IGL +A+  +L GA+R+   +   EK 
Sbjct: 143 EPLSCAVH-----GLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKL 197

Query: 178 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK 237
           E+ K+ G TE V+      +   +   +    G D   E  G+   +++A    R+G G 
Sbjct: 198 ELAKKLGATETVD----PSREDPEAQKEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GT 252

Query: 238 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT 297
            +V GV  P +++S+S FE+      ++GS F           LL+     ++++   V+
Sbjct: 253 VLVFGVYAPDARVSISPFEIFQKELTIIGS-FINPYTFPRAIALLES---GKIDVKGLVS 308

Query: 298 HEMKFEEINSAFDLLIKGKCLRCVI 322
           H +  EE+  A + +  G  L+ V+
Sbjct: 309 HRLPLEEVPEALEGMRSGGALKVVV 333

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  137 bits (347), Expect = 7e-38
 Identities = 89/308 (28%), Positives = 126/308 (40%), Gaps = 35/308 (11%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 68
           P  LGHE  G V  VG  V     GD V    +  C  C  CR  +GNLC          
Sbjct: 57  PLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC---------- 106

Query: 69  MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 128
              +Q      + G           F+EY V+    +V V   VP  +A + +  V T  
Sbjct: 107 --LNQGMPGLGIDG----------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPY 154

Query: 129 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 188
            A  R   V+ G TV++ GLG +GL   + A+  GA  +I VD+  EK E+ K  G  E 
Sbjct: 155 HAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAA-VIAVDIKEEKLELAKELGADEV 213

Query: 189 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 248
           +NS    D S          GG D  F+ VG     ++A    + G G+ +V+G+ +   
Sbjct: 214 LNSL---DDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDKL 269

Query: 249 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 308
            + LS          ++GS FGG     D+P +L      +L            +EI   
Sbjct: 270 TVDLSDLIARE--LRIIGS-FGGT--PEDLPEVLDLIAKGKL---DPQVETRPLDEIPEV 321

Query: 309 FDLLIKGK 316
            + L KGK
Sbjct: 322 LERLHKGK 329

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  131 bits (332), Expect = 1e-35
 Identities = 84/324 (25%), Positives = 135/324 (41%), Gaps = 45/324 (13%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 68
           PRILGHE  G +  VG+ V G   GD V       C EC  C     N+C          
Sbjct: 54  PRILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMC---------- 103

Query: 69  MPRDQTSRFKDLRGETIHHFVSVSSFSEYTV-----LDIAHVVKVDPTVPPNRACL---L 120
                     + +            F+EY       +    V+K+   V    A L   L
Sbjct: 104 ---------PNYKKFGNL---YDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPL 151

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
           +C +      A R A ++ G TV++ G G IGL  A  A+  GA ++I  D+   + E  
Sbjct: 152 ACCI-----NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFA 206

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTI 239
           K+ G    +++    ++ + + + ++TDG GAD      G      +A    RKG G+ +
Sbjct: 207 KKLGADYTIDA---AEEDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRIL 262

Query: 240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS-DIPILLKRYMDKELELDKFVTH 298
             G    GS +++    ++H  +I   ++ G   A   D    L+     ++++   +TH
Sbjct: 263 FFGGLPKGSTVNI-DPNLIHYREI---TITGSYAASPEDYKEALELIASGKIDVKDLITH 318

Query: 299 EMKFEEINSAFDLLIKGKCLRCVI 322
               E+I  AF+L   GK L+ VI
Sbjct: 319 RFPLEDIEEAFELAADGKSLKIVI 342

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  131 bits (331), Expect = 1e-35
 Identities = 89/313 (28%), Positives = 146/313 (46%), Gaps = 42/313 (13%)

Query: 6   AVFPRILGHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPF 63
           A +PRILGHE  G V  VGE V G+  GD  VV P+    C EC  CR  + N C     
Sbjct: 51  ASYPRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCE---- 104

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
            +              + G  +H       F+EY V+    ++  +  +  ++A L+   
Sbjct: 105 NLQ-------------VLG--VH---RDGGFAEYIVVPADALLVPE-GLSLDQAALVEP- 144

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
           ++ G  A  R A V  G TV++ G G IGL V + A+  GA R+I VD+  E+ E  +  
Sbjct: 145 LAIGAHAVRR-AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL 202

Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
           G  + +N    GD+ V+  + ++TDG GAD   +  G  + ++EA      G G+ +++G
Sbjct: 203 GADDTINV---GDEDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVG 258

Query: 243 VDQPGSQLSLSSFEVLHSGKI-LMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
           + +         F   H  ++ ++GS       + D P ++      +++ +  +TH   
Sbjct: 259 LSKGPVTFPDPEF---HKKELTILGSR---NATREDFPDVIDLLESGKVDPEALITHRFP 312

Query: 302 FEEINSAFDLLIK 314
           FE++  AFDL   
Sbjct: 313 FEDVPEAFDLWEA 325

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  130 bits (330), Expect = 2e-35
 Identities = 82/310 (26%), Positives = 131/310 (42%), Gaps = 39/310 (12%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKIS 66
            P I GHE +G V  VGE V G+  GD V +   +  C EC  CRS   NLC        
Sbjct: 57  LPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLC-------- 108

Query: 67  PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 126
                      + + G T         ++EY V+   +VVK+   +    A  L C   T
Sbjct: 109 ---------PNQKITGYTTD-----GGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGIT 154

Query: 127 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 186
              A  + ANV+ G  V + G G +G    + A+  GA  +I +    EK E+ K+ G  
Sbjct: 155 TYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGAD 212

Query: 187 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 246
             +NS    D    + +       AD   + VG  + ++ +    R+G G  +++G+   
Sbjct: 213 HVINSS---DSDALEAV----KEIADAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGG 263

Query: 247 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 306
           G    L +F ++     ++GSL G      D+   L      E ++   +   +  +EIN
Sbjct: 264 GPIPLLPAFLLILKEISIVGSLVGTRA---DLEEALD--FAAEGKIKPEILETIPLDEIN 318

Query: 307 SAFDLLIKGK 316
            A++ + KGK
Sbjct: 319 EAYERMEKGK 328

Length = 339

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  129 bits (326), Expect = 9e-35
 Identities = 86/326 (26%), Positives = 128/326 (39%), Gaps = 31/326 (9%)

Query: 8   FPRILGHEAIGVVESVGENVD------GVVEGD-VVIPHFLADCTECVGCRSKKGNLC-S 59
            P ILGHE +G V ++G  V        +  GD V        C  C  C       C +
Sbjct: 54  LPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAP-CGRCYRCLVGDPTKCEN 112

Query: 60  AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHVVKVDPTVPPNRAC 118
              +                L G           ++E+  L     +V+V   VP   A 
Sbjct: 113 RKKYGHEASCDDPH------LSG----------GYAEHIYLPPGTAIVRVPDNVPDEVAA 156

Query: 119 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 177
             +C ++T V AA   A  V  G TVV+ G G +GL     A+L GA R+I +D   E+ 
Sbjct: 157 PANCALAT-VLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERL 215

Query: 178 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWG 236
           E+ + FG    ++     D     I+ D+T G GAD   E  G  + V E     R+G G
Sbjct: 216 ELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-G 274

Query: 237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFV 296
             +++G   P   + L    ++     ++G               L+R  D+     + V
Sbjct: 275 TYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFP-FAELV 333

Query: 297 THEMKFEEINSAFDLLIKGKCLRCVI 322
           TH    E+IN A +L   G  L+ VI
Sbjct: 334 THRYPLEDINEALELAESGTALKVVI 359

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  125 bits (316), Expect = 3e-33
 Identities = 89/317 (28%), Positives = 133/317 (41%), Gaps = 48/317 (15%)

Query: 10  RILGHEAIGVVESVGENVDGVVEGD-VVIPHFLAD--CTECV-GCRSKKGNLCSAFPFKI 65
            ILGHEA+GVVE VG  V     GD V++P    D        G  S+ G +   + F  
Sbjct: 55  MILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKF-- 112

Query: 66  SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT-VLDI-AHVVKVDPTVPPNRACLLSCG 123
                    S FKD              F+EY  V D  A++  +   +   +A +L   
Sbjct: 113 ---------SNFKD------------GVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDM 151

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
           +STG   A   AN+++G TV +FG+G +GL    GARL GA RII V     + E+ K +
Sbjct: 152 MSTGFHGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY 210

Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
           G T+ V+ KN     V + I+ +T G G D      G     ++A    + G G    + 
Sbjct: 211 GATDIVDYKNG---DVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVN 266

Query: 243 VDQPGSQL--SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD----KELELDKFV 296
                  L      + V    K + G L  G + +      ++R         ++  K +
Sbjct: 267 YYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLR------MERLASLIEYGRVDPSKLL 320

Query: 297 TH-EMKFEEINSAFDLL 312
           TH    F++I  A  L+
Sbjct: 321 THHFFGFDDIEEALMLM 337

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  125 bits (315), Expect = 3e-33
 Identities = 82/313 (26%), Positives = 132/313 (42%), Gaps = 33/313 (10%)

Query: 11  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 70
           I GHE  GVV +VG  V     GD V+ +    C  C  CR     LC++          
Sbjct: 57  IPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYG---- 112

Query: 71  RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 130
                   +  G            +EY ++    ++ +   +      LL CG+ T    
Sbjct: 113 -------WNRDG----------GHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTA-YH 154

Query: 131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 190
           A R   V    TV++ G G +GL     AR  GA  +IGVD   E+ E+ K  G    +N
Sbjct: 155 ALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVIN 214

Query: 191 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 250
           S   G   V +I    +  GAD   EC G  +  + A    R  WG+ +++G    G +L
Sbjct: 215 S---GQDDVQEIRELTSGAGADVAIECSGNTAARRLALEAVRP-WGRLVLVGE---GGEL 267

Query: 251 SLS-SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF 309
           ++  S +++   + L+GS +  +    +    L R+   +LE+D+ VTH    ++   A+
Sbjct: 268 TIEVSNDLIRKQRTLIGSWYFSVPDMEECAEFLARH---KLEVDRLVTHRFGLDQAPEAY 324

Query: 310 DLLIKGKCLRCVI 322
            L  +G+  + V 
Sbjct: 325 ALFAQGESGKVVF 337

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  124 bits (314), Expect = 5e-33
 Identities = 86/322 (26%), Positives = 130/322 (40%), Gaps = 33/322 (10%)

Query: 6   AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 65
           A    ILGHE +G V  VG +V  +  GD V    +  C  C  CR      C    +  
Sbjct: 52  AKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGW 111

Query: 66  SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCG 123
                        D               +EY  +  A  ++ K+   +P   A +LS  
Sbjct: 112 KL-------GNRID------------GGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDI 152

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
           + TG   A   A ++ GSTV + G G +GL    GARL GA RII VD   E+ ++ K  
Sbjct: 153 LPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA 211

Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
           G T+ +N KN     + + I+++T G G D   E VG     ++A    R G G    +G
Sbjct: 212 GATDIINPKNG---DIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVG 267

Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
           V            E             G +  ++ +P LL    + +++  K +TH    
Sbjct: 268 VYG-KPDPLPLLGEWFGKNLTFKT---GLVPVRARMPELLDLIEEGKIDPSKLITHRFPL 323

Query: 303 EEINSAFDLLIKGK--CLRCVI 322
           ++I  A+ L       C++ VI
Sbjct: 324 DDILKAYRLFDNKPDGCIKVVI 345

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  125 bits (316), Expect = 6e-33
 Identities = 91/358 (25%), Positives = 145/358 (40%), Gaps = 76/358 (21%)

Query: 11  ILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 69
           ILGHE +GVVE VG  V  +  GD VV+P  +A C EC  C+    + C           
Sbjct: 57  ILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIA-CGECFYCKRGLYSQC----------- 104

Query: 70  PRDQTSRFKDLRGETIHHFVSVSSFS-----------EYTVLDIAHV--VKVDPTVPPNR 116
             D T+   ++     H    +  +S           EY  +  A V   K+   +   +
Sbjct: 105 --DNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEK 162

Query: 117 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 176
           A  LS  + TG  AA   A V+ G TV ++G G +GL  A  A+L GA R+I +D + E+
Sbjct: 163 ALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPER 221

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL--------------- 220
            E+ +     E +N +      V + + ++T G G D C + VG+               
Sbjct: 222 LEMARSHLGAETINFEEV--DDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALL 279

Query: 221 ------ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF----- 269
                    ++EA    RKG G   ++GV                  K  +G+       
Sbjct: 280 KLETDRPDALREAIQAVRKG-GTVSIIGVYGGTVN------------KFPIGAAMNKGLT 326

Query: 270 ---GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVI 322
              G    +  +P LL+     EL+    +TH +  E+   A+ +  K +  C++ V+
Sbjct: 327 LRMGQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVL 384

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  123 bits (312), Expect = 9e-33
 Identities = 84/322 (26%), Positives = 144/322 (44%), Gaps = 45/322 (13%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFP 62
               P +LGHE  G VE VG  VD +  GD   V P  L  C +C  C+  + +LCS + 
Sbjct: 49  AYHPPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNP--LLPCGKCEYCKKGEYSLCSNY- 105

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                           D  G          +F+EY  +   +++K+   V    A ++  
Sbjct: 106 ----------------DYIGSRRD-----GAFAEYVSVPARNLIKIPDHVDYEEAAMIE- 143

Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
             +  + A    A + +G TVV+ G G+IGL   +  ++ GA R+I VD+  EK  + + 
Sbjct: 144 PAAVALHAVRL-AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE 202

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
            G  + +N K    + V     ++T+G GAD   E  G  + +++A A  R G GK +++
Sbjct: 203 LGADDTINPKEEDVEKVR----ELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLV 257

Query: 242 GVDQPGSQLSLSSFE-VLHSGKILMGS------LFGGLKAKSDIPILLKRYMDKELELDK 294
           G+      LS  +FE +L     + GS       F G + ++ + +L    +     ++ 
Sbjct: 258 GIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIK----VEP 313

Query: 295 FVTHEMKFEEINSAFDLLIKGK 316
            +TH +  E+  +AF+ L   +
Sbjct: 314 LITHRLPLEDGPAAFERLADRE 335

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  117 bits (295), Expect = 2e-30
 Identities = 76/320 (23%), Positives = 122/320 (38%), Gaps = 48/320 (15%)

Query: 6   AVFPRILGHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPF 63
              P  LGHE  GVV  VG  V G   GD  VV P     C  C  C+    NLC +  F
Sbjct: 62  ETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTI--KCGTCGACKRGLYNLCDSLGF 119

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSS--FSEYTVLDIAHVVKVDPTVPPNRACL-- 119
                                    +      F+EY V+   HV K+   VP   A L  
Sbjct: 120 -----------------------IGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVE 156

Query: 120 -LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 178
            L+         A R +  + G T ++ G G IGL      +  GA++II  +    + E
Sbjct: 157 PLAVAWH-----AVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRE 211

Query: 179 IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGK 237
           + +  G T  ++        V   +  +T G G D  F+C G+ + +  A    R   G 
Sbjct: 212 LAEELGATIVLDPTEVD---VVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GT 267

Query: 238 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT 297
            + + +      +S +  +++   K L GS+      + D   ++      +++ +  +T
Sbjct: 268 AVNVAI--WEKPISFNPNDLVLKEKTLTGSI---CYTREDFEEVIDLLASGKIDAEPLIT 322

Query: 298 HEMKFEEI-NSAFDLLIKGK 316
             +  E+I    F+ LI  K
Sbjct: 323 SRIPLEDIVEKGFEELINDK 342

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  114 bits (288), Expect = 2e-29
 Identities = 66/228 (28%), Positives = 95/228 (41%), Gaps = 27/228 (11%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 68
           P + GHE  GVV  VGE+V     GD V   F+  C  C  CR+   N+C          
Sbjct: 55  PHVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVC---------- 104

Query: 69  MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV--VKVDPTVPPNRACLLSCGVST 126
               Q              F    SF+EY  +  A V  V++   V    A  L C  +T
Sbjct: 105 --EHQV----------QPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFAT 152

Query: 127 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 186
              A    A V+ G  V + G G +GL+    A   GA R+I VD+  +K E+ +  G  
Sbjct: 153 AFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAV 211

Query: 187 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 234
             VN+     + V+  + D+T GGA    + +G+    + + A  RK 
Sbjct: 212 ATVNAS--EVEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKR 257

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  112 bits (282), Expect = 2e-28
 Identities = 94/336 (27%), Positives = 136/336 (40%), Gaps = 59/336 (17%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-----IPHFLADCTECVGCRSKKGNL 57
           DF    P +LGHE+ G V +VG  V  +  GD V     +P     C  C  C+S + NL
Sbjct: 49  DFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNL 103

Query: 58  CSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA 117
           C    F  +P  P D T                      Y         K+   V     
Sbjct: 104 CPDMRFAATP--PVDGT-------------------LCRYVNHPADFCHKLPDNVSLEEG 142

Query: 118 CL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 174
            L   LS GV      A R A V  G TV++FG G IGL  A  A+  GAT+++  D+  
Sbjct: 143 ALVEPLSVGV-----HACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDP 197

Query: 175 EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEA-YACCR 232
            + E  K  G T  VN +       ++ I ++  G G D   EC G  S +Q A YA   
Sbjct: 198 SRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRP 257

Query: 233 KGWGKTIVL-GVDQPGSQL---SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK 288
            G   T+VL G+ +P   L   + S  E+          + G  +  +  P  ++     
Sbjct: 258 GG---TVVLVGMGKPEVTLPLSAASLREI---------DIRGVFRYANTYPTAIELLASG 305

Query: 289 ELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVI 322
           ++++   +TH    E+   AF+   KGK   ++ VI
Sbjct: 306 KVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI 341

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score =  110 bits (278), Expect = 7e-28
 Identities = 95/319 (29%), Positives = 134/319 (42%), Gaps = 49/319 (15%)

Query: 3   DFPAVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
           D P V P RILGHE +GVVE VG  V     GD V+   ++ C  C  CR    + C + 
Sbjct: 48  DVPTVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCES- 106

Query: 62  PFKISPWMPRDQTSRFKDLRGETIH----HFVSV--SSFSEYTVLDIAHVVKVDPTVPPN 115
                 W           + G  I      +V +  +  S Y         K+   V   
Sbjct: 107 ----GGW-----------ILGNLIDGTQAEYVRIPHADNSLY---------KLPEGVDEE 142

Query: 116 RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 175
            A +LS  + TG         V+ G TV I G G +GLA    A+L   ++II VD+   
Sbjct: 143 AAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDN 202

Query: 176 KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRK- 233
           + E+ K+ G T  VNS         + ++++TDG G D   E VG    +   +  C++ 
Sbjct: 203 RLEVAKKLGATHTVNSA---KGDAIEQVLELTDGRGVDVVIEAVG----IPATFELCQEL 255

Query: 234 -GWGKTI-VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE 291
              G  I  +GV      L L   E L    I + +   GL   +  P+LLK     +L+
Sbjct: 256 VAPGGHIANVGVHGKPVDLHL---EKLWIKNITITT---GLVDTNTTPMLLKLVSSGKLD 309

Query: 292 LDKFVTHEMKFEEINSAFD 310
             K VTH  K  EI  A+D
Sbjct: 310 PSKLVTHRFKLSEIEKAYD 328

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  108 bits (273), Expect = 3e-27
 Identities = 79/326 (24%), Positives = 122/326 (37%), Gaps = 40/326 (12%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           + D     P +LGHE +G V +VG +   V  GD V+ +    C EC  C +   NLC+ 
Sbjct: 59  LDDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCA- 117

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                            K               ++EY ++  +  +     + P  A  L
Sbjct: 118 -----------------KGRALGIFQD----GGYAEYVIVPHSRYLVDPGGLDPALAATL 156

Query: 121 SCGVSTGVGAAWRTANVEVGST-VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 179
           +C   T   A  +     V    VVI G G +GL      +  G   II VD+   K E 
Sbjct: 157 ACSGLTAYSAV-KKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEA 215

Query: 180 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI 239
            K  G    VN  +       + II    GG D   + V  ++    A+    KG GK +
Sbjct: 216 AKAAGADVVVNGSDPDAA---KRIIKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLV 271

Query: 240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD--KELELDKFVT 297
           ++G+   G + +L    +      + GS  G L+        L+  +   K  +L     
Sbjct: 272 LVGL--FGGEATLPLPLLPLRALTIQGSYVGSLEE-------LRELVALAKAGKLKPIPL 322

Query: 298 HEMKFEEINSAFDLLIKGKCL-RCVI 322
            E    ++N A D L  GK + R V+
Sbjct: 323 TERPLSDVNDALDDLKAGKVVGRAVL 348

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score =  108 bits (271), Expect = 5e-27
 Identities = 89/314 (28%), Positives = 134/314 (42%), Gaps = 42/314 (13%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
           P   P  +GHE +GVVE VG  V  V  GD VI  F      C  CR+     C      
Sbjct: 50  PTRAPAPIGHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSC------ 103

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH--VVKVDPTVPPNRACL--- 119
                          + G     FV      EY  + +A   +VKV P  P +   L   
Sbjct: 104 ---------------VHGGFWGAFVD-GGQGEYVRVPLADGTLVKV-PGSPSDDEDLLPS 146

Query: 120 ---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 176
              LS  + TG  AA  +A V  GSTVV+ G G++GL     A+  GA RII +    ++
Sbjct: 147 LLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDR 205

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW 235
             + + FG T+ V  +  G+++V++ + ++T G GAD   ECVG    +++A A  R G 
Sbjct: 206 QALAREFGATDIVAER--GEEAVAR-VRELTGGVGADAVLECVGTQESMEQAIAIARPG- 261

Query: 236 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF 295
           G+   +GV  P   + L   E+      L G   G    +  +P LL   +   +   + 
Sbjct: 262 GRVGYVGV--PHGGVELDVRELFFRNVGLAG---GPAPVRRYLPELLDDVLAGRINPGRV 316

Query: 296 VTHEMKFEEINSAF 309
               +  +E+   +
Sbjct: 317 FDLTLPLDEVAEGY 330

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score =  105 bits (264), Expect = 6e-26
 Identities = 89/316 (28%), Positives = 132/316 (41%), Gaps = 33/316 (10%)

Query: 11  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS---AFPFKISP 67
           +LGHE +G V  VG  V  +  GD V+  F   C EC  CR  +   C+    F +  SP
Sbjct: 56  VLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSP 115

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
            +   Q              +V V  F++ T+      +K+   +    A LL   + TG
Sbjct: 116 NLDGAQA------------EYVRVP-FADGTL------LKLPDGLSDEAALLLGDILPTG 156

Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
              A + A V  G TV + G G +GL     A++ GA R+  VD + E+ E     G  E
Sbjct: 157 YFGA-KRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALG-AE 214

Query: 188 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 246
            +N +   D    + + + T+G GAD   E VG A+ +  A+   R   G    +GV   
Sbjct: 215 PINFE---DAEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRP-GGVISSVGVHTA 270

Query: 247 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 306
             +      +     K L    FG    +S  P LL       L+L+  + H M  EE  
Sbjct: 271 E-EFPFPGLDAY--NKNLTLR-FGRCPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAP 326

Query: 307 SAFDLLIKGKCLRCVI 322
            A+ L  K K L+ V+
Sbjct: 327 EAYRLFDKRKVLKVVL 342

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  102 bits (256), Expect = 7e-25
 Identities = 82/321 (25%), Positives = 133/321 (41%), Gaps = 45/321 (14%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P  LGHE  G VE VG  VDG+ EGD V+ H    C  C  CR  + N C         
Sbjct: 57  LPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCEN------- 109

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
                  +RF    G           F+EY ++    +VK+   + P  A  L+    T 
Sbjct: 110 -------ARF---PGIGTD-----GGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTA 154

Query: 128 VGAAWRTANV-EVGSTVVIFG---LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
             A  +     + GSTVV+ G   LG I + +    R      +I VD   E  ++ +R 
Sbjct: 155 YHAVKKALPYLDPGSTVVVIGVGGLGHIAVQIL---RALTPATVIAVDRSEEALKLAERL 211

Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
           G    +N        V + + ++T G GAD   + VG    +  A     KG G+ +++G
Sbjct: 212 GADHVLN----ASDDVVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVG 266

Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
               G    L + +++ +   ++GSL+G     +++  ++      ++   K    +   
Sbjct: 267 Y---GGHGRLPTSDLVPTEISVIGSLWGTR---AELVEVVALAESGKV---KVEITKFPL 317

Query: 303 EEINSAFDLLIKGKCL-RCVI 322
           E+ N A D L +G+   R V+
Sbjct: 318 EDANEALDRLREGRVTGRAVL 338

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score =  100 bits (250), Expect = 3e-24
 Identities = 66/313 (21%), Positives = 112/313 (35%), Gaps = 66/313 (21%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 68
           P   GHE  G V ++G  V G+  GD V                                
Sbjct: 52  PGGPGHEGWGRVVALGPGVRGLAVGDRVA------------------------------- 80

Query: 69  MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP--PNRACLLSCGVST 126
                               +S  +F+EY + D  H V +   +         L C ++ 
Sbjct: 81  -------------------GLSGGAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCALN- 120

Query: 127 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 186
                +R   +  G TV + G G IGL   + A   GA R+I +D    +  + +  G T
Sbjct: 121 ----VFRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGAT 176

Query: 187 EFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 245
           E V   +   +++ + + ++T G GAD   E VG    +  A     +  G+ ++ G  Q
Sbjct: 177 EVVTDDS---EAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQ 232

Query: 246 PG-SQLSLSSFEVLHSGKILMGSLFGGLKAK-SDIPILLKRYMDKELELDKFVTHEMKFE 303
            G   +   +      G  L+ ++    +     +   +K   D  L+L   +THE   E
Sbjct: 233 DGPRPVPFQT--WNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLE 290

Query: 304 EINSAFDLLIKGK 316
           E+  AF+   +  
Sbjct: 291 ELGDAFEAARRRP 303

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 96.6 bits (241), Expect = 3e-23
 Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 23/230 (10%)

Query: 95  SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 154
           +E  V+    +V +   +PP RA L +   +T +      A   +G  V + GLG +GL 
Sbjct: 55  AERVVVPANLLVPLPDGLPPERAALTALA-ATALNGVRD-AEPRLGERVAVVGLGLVGLL 112

Query: 155 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC 214
            A+ A+  GA  ++GVD  + + E+ +  G  + V +             ++   GAD  
Sbjct: 113 AAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAAD---------TADEIGGRGADVV 163

Query: 215 FECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG--KILMGSLFGGL 272
            E  G  S ++ A    R   G+ +++G       L L   E  H     I    ++G  
Sbjct: 164 IEASGSPSALETALRLLRDR-GRVVLVGWYGLKP-LLLG--EEFHFKRLPIRSSQVYGIG 219

Query: 273 KAKSDIPILLKRYMDKELEL------DKFVTHEMKFEEINSAFDLLIKGK 316
           +          R +++ L+L      +  +TH + FE+   A+ LL +  
Sbjct: 220 RYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDP 269

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 95.1 bits (237), Expect = 2e-22
 Identities = 87/322 (27%), Positives = 137/322 (42%), Gaps = 47/322 (14%)

Query: 6   AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 65
             +P ILGHE +G VE VGE V+    GD VI ++   C +C  C S + NLC       
Sbjct: 52  GKYPLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLC------- 104

Query: 66  SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 125
                          R    +       F+EY  +    +VK+   V    A L +C V 
Sbjct: 105 ---------------RNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVG 149

Query: 126 TGVGAAWRTANVEVGSTVVI-FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 184
           T V A  + A V+ G TV++    G +G+   + A+  GA R+I V    EK +I K  G
Sbjct: 150 TAVHAL-KRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELG 207

Query: 185 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 244
               ++     +            GGAD   E VG  ++ +   +   KG G+ +++G  
Sbjct: 208 ADYVIDGSKFSEDVKKL-------GGADVVIELVGSPTIEESLRS-LNKG-GRLVLIGNV 258

Query: 245 QPGSQLSLSSFEVLHSGKILMG--SLFGGLKA-KSDIPILLKRYMDKELELDKFVTHEMK 301
            P           L  G +++    + G + A K+D+   LK  + KE ++   +   + 
Sbjct: 259 TP-------DPAPLRPGLLILKEIRIIGSISATKADVEEALK--LVKEGKIKPVIDRVVS 309

Query: 302 FEEINSAFDLLIKGKCL-RCVI 322
            E+IN A + L  GK + R V+
Sbjct: 310 LEDINEALEDLKSGKVVGRIVL 331

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 93.8 bits (234), Expect = 8e-22
 Identities = 78/307 (25%), Positives = 118/307 (38%), Gaps = 39/307 (12%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 68
           P +LGHE  GVVE+VG  V G+  G  V  +    C  C  CR+ + NLC    F  S  
Sbjct: 54  PMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGS-- 111

Query: 69  MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 128
                  RF  ++G           F EY V+D +  V +   +   RA  L+  ++  +
Sbjct: 112 -----AMRFPHVQG----------GFREYLVVDASQCVPLPDGLSLRRAA-LAEPLAVAL 155

Query: 129 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 188
            A  R  ++  G  V++ G G IG  V   AR  GA  I+  D+      + +  G  E 
Sbjct: 156 HAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADET 214

Query: 189 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV----LGVD 244
           VN       + +        G  D  FE  G  + +  A    R   G T+V    LG  
Sbjct: 215 VNLARDPLAAYAADK-----GDFDVVFEASGAPAALASALRVVRP--GGTVVQVGMLGGP 267

Query: 245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 304
            P    +L + E+          L G  +   +    ++      +++   +T     EE
Sbjct: 268 VPLPLNALVAKEL---------DLRGSFRFDDEFAEAVRLLAAGRIDVRPLITAVFPLEE 318

Query: 305 INSAFDL 311
              AF L
Sbjct: 319 AAEAFAL 325

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 93.8 bits (234), Expect = 9e-22
 Identities = 85/325 (26%), Positives = 133/325 (40%), Gaps = 58/325 (17%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPF 63
               P I GHE  GVV +VG  V G+  GD V +      C +C  CR+    LC     
Sbjct: 53  KPKLPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPN--- 109

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                  +  +    D             +F+EY + D  +V  +   +   +A  L C 
Sbjct: 110 -------QKNSGYTVD------------GTFAEYAIADARYVTPIPDGLSFEQAAPLLCA 150

Query: 124 VSTGVGAAWRTANVEVGSTVVIFG----LGSIGL--AVAEGARLCGATRIIGVDVISEKF 177
             T V  A + A ++ G  VVI G    LG +G+  A A G R      +I +DV  EK 
Sbjct: 151 GVT-VYKALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLR------VIAIDVGDEKL 203

Query: 178 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWG 236
           E+ K  G   FV+ K        + + ++T G GA         A+  ++A    R G G
Sbjct: 204 ELAKELGADAFVDFK---KSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-G 259

Query: 237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELEL---D 293
             + +G+  PG  + L  F+++  G  ++GSL G  +            + + LE     
Sbjct: 260 TLVCVGL-PPGGFIPLDPFDLVLRGITIVGSLVGTRQD-----------LQEALEFAARG 307

Query: 294 KFVTH--EMKFEEINSAFDLLIKGK 316
           K   H   +  E++N  F+ + +GK
Sbjct: 308 KVKPHIQVVPLEDLNEVFEKMEEGK 332

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 91.1 bits (227), Expect = 7e-21
 Identities = 81/322 (25%), Positives = 129/322 (40%), Gaps = 58/322 (18%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVV-----IPHFLADCTECVGCRSKKGNLCSAFPF 63
           P I GHE  G V  VGE V  V  GD V     I      C +C  CR+   ++C     
Sbjct: 58  PLIFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIV-----CGKCYQCRTGNYHVC----- 107

Query: 64  KISPWMPRDQTSRF--KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
                    Q ++    D  G           F+EY V+   ++ K D  +PP  A    
Sbjct: 108 ---------QNTKILGVDTDG----------CFAEYVVVPEENLWKNDKDIPPEIA---- 144

Query: 122 CGVSTGVGAAWRTANVE--VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 179
             +   +G A  T       G +V+I G G IGL     A+  GA+ +I  D    + E+
Sbjct: 145 -SIQEPLGNAVHTVLAGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLEL 203

Query: 180 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI 239
            K+ G    +N +   ++ V ++       G D   E  G    +++       G G+  
Sbjct: 204 AKKMGADVVINPR---EEDVVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVS 259

Query: 240 VLGVDQPGSQLSLSSFEVLHSGKILMG----SLFGGLKAKSDIPILLKRYMDKELELDKF 295
           +LG+      + L++  V+  G  + G     +F      S    LLK     +++L   
Sbjct: 260 ILGLPPGPVDIDLNN-LVIFKGLTVQGITGRKMFETWYQVSA---LLK---SGKVDLSPV 312

Query: 296 VTHEMKFEEINSAFDLLIKGKC 317
           +TH++  E+   AF+L+  GKC
Sbjct: 313 ITHKLPLEDFEEAFELMRSGKC 334

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 90.9 bits (226), Expect = 7e-21
 Identities = 84/310 (27%), Positives = 130/310 (41%), Gaps = 40/310 (12%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
           +P ILGHE +G VE VGENV G   GD V     A    C  CRS +   C         
Sbjct: 54  YPVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC--------- 104

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
                   + +   GE +  F     F+EY  + +  +VKV P V    A ++ C     
Sbjct: 105 --------KNRLGYGEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMV 151

Query: 128 VGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 186
                R A V+ G TV++ G  G +G+   + A+  GA ++I V     K +I  ++   
Sbjct: 152 YRGL-RRAGVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKYA-- 207

Query: 187 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 246
           ++V   +   + V +I      GGAD   E VG  +L +E+      G GK I +G   P
Sbjct: 208 DYVIVGSKFSEEVKKI------GGADIVIETVGTPTL-EESLRSLNMG-GKIIQIGNVDP 259

Query: 247 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 306
               SL    ++     ++G +      K D+   LK  +  E ++   +  E+   EI+
Sbjct: 260 SPTYSLRLGYIILKDIEIIGHISAT---KRDVEEALK--LVAEGKIKPVIGAEVSLSEID 314

Query: 307 SAFDLLIKGK 316
            A + L    
Sbjct: 315 KALEELKDKS 324

Length = 334

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 37/241 (15%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKIS 66
            P +LGHE  G +  VG +V+G   GD VV     + C  C  CR    NLC        
Sbjct: 55  TPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPH------ 108

Query: 67  PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCG 123
                      +   G           F+EY ++    + ++   +    A L   L+  
Sbjct: 109 -----------RKGIGTQAD-----GGFAEYVLVPEESLHELPENLSLEAAALTEPLAVA 152

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII-GVDVISEKFEIGKR 182
           V     A    + +  G TVV+FG G IGL  A+ A+L GAT ++ G +    + ++ K 
Sbjct: 153 VH----AVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKE 208

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
            G      + N G++ +++++ ++TDG GAD   EC G    +++A    RKG G+ + +
Sbjct: 209 LGAD----AVNGGEEDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQV 263

Query: 242 G 242
           G
Sbjct: 264 G 264

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 84.7 bits (210), Expect = 3e-20
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 151 IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG- 209
           +GLA  + A+  GA R+I VD   EK E+ K  G    +N +   D+   + + ++T G 
Sbjct: 2   VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYR---DEDFVERVRELTGGR 58

Query: 210 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF 269
           G D   +CVG  + +++A    R G    +V         +     ++L     ++GSL 
Sbjct: 59  GVDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGA--PVPFPLRDLLLKELTILGSLG 116

Query: 270 GGLK 273
           GG +
Sbjct: 117 GGRE 120

Length = 131

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 72/323 (22%), Positives = 119/323 (36%), Gaps = 58/323 (17%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFP 62
             + +P + GHE +G V  VG  V+G   GD V +   +  C  C  CR    NLC    
Sbjct: 49  GGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKA- 107

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                              G     + +   ++EY V D  + V +   +P  +A  L C
Sbjct: 108 ----------------VNTG-----YTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLC 146

Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
              T V +A R A    G  V + G+G +G    + AR  G    + +    +K E+ ++
Sbjct: 147 AGIT-VYSALRDAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARK 204

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
            G  E V+S    D            GGAD     V   +  + A    R+G G+ +++G
Sbjct: 205 LGADEVVDSGAELD-------EQAAAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVG 256

Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLK---------AKSDIPILLKRYMDKELELD 293
           +       S   F ++   + + GS  GG           A+  +               
Sbjct: 257 LP-ESPPFSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGKV--------------- 300

Query: 294 KFVTHEMKFEEINSAFDLLIKGK 316
           K +      ++ N A++ + KG 
Sbjct: 301 KPMIETFPLDQANEAYERMEKGD 323

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 87.6 bits (217), Expect = 2e-19
 Identities = 77/324 (23%), Positives = 129/324 (39%), Gaps = 48/324 (14%)

Query: 4   FPAV--FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
           +P +  FP ++GHE  GVVE  G+NV    +GD V    +  C  C  CRS   N C   
Sbjct: 81  YPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCK-- 138

Query: 62  PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV---PPNRAC 118
                           K+L       F +  +F+EY  ++  +  +++        ++A 
Sbjct: 139 --------------NLKEL------GFSADGAFAEYIAVNARYAWEINELREIYSEDKAF 178

Query: 119 LLSCGVS-TGV---GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 174
                V  T V   G   R      G+ VV++G G IGLA    A+  GA+++I  ++  
Sbjct: 179 EAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISE 238

Query: 175 EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLV----QEAYA 229
           E+  + K  G     N     D    + ++++T G GAD   E  G         +++ A
Sbjct: 239 ERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIA 298

Query: 230 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG--GLKAKSDIPILLKRYMD 287
                 GK + +G  +  + + L   EVL   +     + G  G       P ++K    
Sbjct: 299 IN----GKIVYIG--RAATTVPL-HLEVLQVRR---AQIVGAQGHSGHGIFPSVIKLMAS 348

Query: 288 KELELDKFVTHEMKFEEINSAFDL 311
            ++++ K +T     E I  A   
Sbjct: 349 GKIDMTKIITARFPLEGIMEAIKA 372

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 84.5 bits (209), Expect = 2e-18
 Identities = 76/325 (23%), Positives = 137/325 (42%), Gaps = 53/325 (16%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 68
           P+++GHE  G V  +G  V+G+  GD V       C +C  CR  + ++C          
Sbjct: 56  PQVVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVC---------- 105

Query: 69  MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVS 125
                       +   I    +   F+EY V+   ++ K   ++PP  A +   L   V 
Sbjct: 106 ------------QNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVH 153

Query: 126 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 185
           T +      A    G +V++ G G IGL     A+  GA  +I  D    + E+ K+ G 
Sbjct: 154 TVL------AGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA 207

Query: 186 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 244
           T  VN      + V + + D+TDG G D   E  G    +++       G G+  +LG+ 
Sbjct: 208 TYVVNPF---KEDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGL- 262

Query: 245 QPGSQLSLSSFEVLHSGKILMGSLF-GGLKAKS------DIPILLKRYMDKELELDKFVT 297
            P  ++++       + K++   L   G+  +        +  L++      L+LD  +T
Sbjct: 263 -PPGKVTID-----FTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGK---LDLDPIIT 313

Query: 298 HEMKFEEINSAFDLLIKGKCLRCVI 322
           H+ KF++    F+L+  G+  + ++
Sbjct: 314 HKFKFDKFEKGFELMRSGQTGKVIL 338

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 82.9 bits (206), Expect = 5e-18
 Identities = 78/337 (23%), Positives = 119/337 (35%), Gaps = 69/337 (20%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLAD-CTECVGCRSKKGNLCSAFPF 63
           P  +P + GHE +G+V +VG  V     GD V      D C  C  C+S +   C     
Sbjct: 50  PTKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYC----- 104

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                 P+   +        TI        ++++ V+D   V K+   +    A  L C 
Sbjct: 105 ------PKGVVTYNGKYPDGTITQ----GGYADHIVVDERFVFKIPEGLDSAAAAPLLCA 154

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS---E 175
             T V +  +   V  G  V + G+G +G      A A GA          V   S    
Sbjct: 155 GIT-VYSPLKRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAE---------VTAFSRSPS 204

Query: 176 KFEIGKRFGVTEFVNSKNCGD-KSVSQ---IIIDMTDGGADYCFECVGLASLVQEAYACC 231
           K E   + G  EF+ +K+    K  +    +IID      D             + Y   
Sbjct: 205 KKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDL------------DPYLSL 252

Query: 232 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE 291
            K  G  +++G   P   L +  F ++   K + GSL GG K              + L+
Sbjct: 253 LKPGGTLVLVGA--PEEPLPVPPFPLIFGRKSVAGSLIGGRKE-----------TQEMLD 299

Query: 292 LD-----KFVTHEMKFEEINSAFDLLIKGKCL-RCVI 322
                  K     +  + IN A + L KG    R V+
Sbjct: 300 FAAEHGIKPWVEVIPMDGINEALERLEKGDVRYRFVL 336

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 80.6 bits (200), Expect = 3e-17
 Identities = 76/329 (23%), Positives = 132/329 (40%), Gaps = 73/329 (22%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVVIP--HFLADCTECVGCRSKKGNLCSAFPFKIS 66
           P ++GHE +G V  VG  V G   GD V    H +  C  C  CR+ + +LC        
Sbjct: 58  PMVVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIV--CGHCRNCRAGRRHLC-------- 107

Query: 67  PWMPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                      ++ +G      V V+   +F+EY V+   +V K+   +P + A +    
Sbjct: 108 -----------RNTKG------VGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIFD-- 148

Query: 124 VSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
                G A  TA   ++ VG  V+I G G IG+  A  A+  GA  ++  DV   + E+ 
Sbjct: 149 ---PFGNAVHTALSFDL-VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELA 204

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTI 239
           ++ G T  VN      + +  ++ ++    G D   E  G  S  ++       G G+  
Sbjct: 205 RKMGATRAVNV---AKEDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIA 260

Query: 240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYM-----------DK 288
           +LG+  P   +++   +V+  G  + G ++G             R M             
Sbjct: 261 MLGI--PPGDMAIDWNKVIFKGLTIKG-IYG-------------REMFETWYKMSALLQS 304

Query: 289 ELELDKFVTHEMKFEEINSAFDLLIKGKC 317
            L+L   +TH    ++    F+ +  G+ 
Sbjct: 305 GLDLSPIITHRFPIDDFQKGFEAMRSGQS 333

Length = 341

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 68/333 (20%), Positives = 107/333 (32%), Gaps = 73/333 (21%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
           F   +P ILG +  G V  VG  V     GD V                + G        
Sbjct: 50  FIPSYPAILGCDFAGTVVEVGSGVTRFKVGDRV----AGFVHGGNPNDPRNG-------- 97

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                                        +F EY V D     K+   +    A  L  G
Sbjct: 98  -----------------------------AFQEYVVADADLTAKIPDNISFEEAATLPVG 128

Query: 124 VST---------GVGAAWRTAN-VEVGSTVVIFGLGS--IGLAVAEGARLCGATRIIGVD 171
           + T         G+       +    G  V+I+G GS  +G    + A+L G  ++I   
Sbjct: 129 LVTAALALFQKLGLPLPPPKPSPASKGKPVLIWG-GSSSVGTLAIQLAKLAGY-KVIT-- 184

Query: 172 VISEK-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYAC 230
             S K F++ K  G     +     D  V + I   T G   Y  +C+      Q     
Sbjct: 185 TASPKNFDLVKSLGADAVFDYH---DPDVVEDIRAATGGKLRYALDCISTPESAQLCAEA 241

Query: 231 CRKGWGKTIV--LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK 288
             +  G  +V  L V +          + +    +L  ++FG +    +   +  +Y+ +
Sbjct: 242 LGRSGGGKLVSLLPVPEET-----EPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPE 296

Query: 289 ELELDKFVTHEMK-----FEEINSAFDLLIKGK 316
            LE  K   H ++      E +    DLL KGK
Sbjct: 297 LLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGK 329

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 33/231 (14%)

Query: 9   PRILGHEAIGVVESVGENVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKIS 66
           P I GHE +G V  +GE  +  GV  GD VI   +  C  C  C   +  +C        
Sbjct: 63  PMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQK------ 116

Query: 67  PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCG 123
                       DL G   +    ++ +  +    I H  KV   +PP  A L   L+C 
Sbjct: 117 -----------HDLYGFQNNVNGGMAEYMRFPKEAIVH--KVPDDIPPEDAILIEPLACA 163

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
           +     A  R AN++    VV+ G G +GL +   ARL    ++I +D+  E+  + ++F
Sbjct: 164 LH----AVDR-ANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKF 218

Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRK 233
           G    +N     +  V + I ++T G G D   E  G  S V++     RK
Sbjct: 219 GADVVLNPP---EVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRK 266

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 46/168 (27%), Positives = 65/168 (38%), Gaps = 29/168 (17%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPF 63
           P   P I GHE +G VE+VG  V     GD V +P   + C EC  CRS + NLC    F
Sbjct: 55  PPKLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF 114

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                             G T+        ++EY V D      +        A  L C 
Sbjct: 115 T-----------------GYTVD-----GGYAEYMVADERFAYPIPEDYDDEEAAPLLCA 152

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATR 166
              G   A + A ++ G  + ++G G+       +A  +GA +   TR
Sbjct: 153 GIIGYR-ALKLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTR 199

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 77.5 bits (191), Expect = 5e-16
 Identities = 88/324 (27%), Positives = 131/324 (40%), Gaps = 48/324 (14%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP 62
           DF    P ++GHE  G++E VG  V  +V GD V       C  C  C+  + NLC    
Sbjct: 68  DFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMK 127

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--- 119
           F  +P                 +H      S +   V       K+   V      +   
Sbjct: 128 FFATP----------------PVH-----GSLANQVVHPADLCFKLPENVSLEEGAMCEP 166

Query: 120 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 179
           LS GV      A R AN+   + V++ G G IGL     AR  GA RI+ VDV  E+  +
Sbjct: 167 LSVGVH-----ACRRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSV 221

Query: 180 GKRFGVTEFVN-SKNCGD--KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG 236
            K+ G  E V  S N  D    V +I   M  GG D  F+CVG    +  A    R G G
Sbjct: 222 AKQLGADEIVLVSTNIEDVESEVEEIQKAMG-GGIDVSFDCVGFNKTMSTALEATRAG-G 279

Query: 237 KTIVLGVDQPGSQLSLSSF---EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELD 293
           K  ++G+      + L+     EV          + G  + ++  P+ L+     ++++ 
Sbjct: 280 KVCLVGMGHNEMTVPLTPAAAREV---------DVVGVFRYRNTWPLCLEFLRSGKIDVK 330

Query: 294 KFVTHEMKF--EEINSAFDLLIKG 315
             +TH   F  +E+  AF+   +G
Sbjct: 331 PLITHRFGFSQKEVEEAFETSARG 354

Length = 364

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 76.6 bits (189), Expect = 9e-16
 Identities = 65/314 (20%), Positives = 106/314 (33%), Gaps = 59/314 (18%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P I G EA GVV +VG  V G   GD V                               
Sbjct: 57  LPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGG-------------------------- 90

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
                                     ++EY V+    +V +   +    A  L     T 
Sbjct: 91  --------------------VGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTA 130

Query: 128 VGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 186
             A +  A ++ G TV++ G  G +G A  + A+  GAT +  V   SEK E+ K  G  
Sbjct: 131 WLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS-SEKLELLKELGAD 189

Query: 187 EFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 245
             +N +   ++   + + ++T G G D   + VG       + A    G G+ + +G   
Sbjct: 190 HVINYR---EEDFVEQVRELTGGKGVDVVLDTVG-GDTFAASLAALAPG-GRLVSIGALS 244

Query: 246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF---VTHEMKF 302
            G  + L+   +L     L G   G    ++    L +  +   L   K    +      
Sbjct: 245 GGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAE--LFDLLASGKLKPVIDRVYPL 302

Query: 303 EEINSAFDLLIKGK 316
            E  +A   L+  +
Sbjct: 303 AEAPAAAAHLLLER 316

Length = 326

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 73.3 bits (180), Expect = 1e-14
 Identities = 66/275 (24%), Positives = 102/275 (37%), Gaps = 48/275 (17%)

Query: 3   DFPAVF-------PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKG 55
           D P +F       P  LGHE  G VE+VG  VD +  GD V    L  C  C  C     
Sbjct: 41  DIPRIFKNGAHYYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFY 100

Query: 56  NLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPN 115
           +LC+ + F           SR                  +EY V+   ++  +   +P  
Sbjct: 101 SLCAKYDFI---------GSR-------------RDGGNAEYIVVKRKNLFALPTDMPIE 138

Query: 116 RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 175
               +   ++ G+ A       E G  V+I G G+IGL   + A   GA  +  +D+ SE
Sbjct: 139 DGAFIE-PITVGLHAFHLAQGCE-GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSE 196

Query: 176 KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW 235
           K  + K  G  +  NS+            +M+          +    L+ E       G 
Sbjct: 197 KLALAKSLGAMQTFNSR------------EMSAPQIQSVLRELRFDQLILET-----AGV 239

Query: 236 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 270
            +T+ L ++  G +  L+    LH    L  + FG
Sbjct: 240 PQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFG 274

Length = 347

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 71.5 bits (176), Expect = 6e-14
 Identities = 83/326 (25%), Positives = 121/326 (37%), Gaps = 69/326 (21%)

Query: 11  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 70
           +LGHEA+GVVE VG+   G+  GD+V+P       +C+ CR  + + C            
Sbjct: 60  VLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCE----------- 107

Query: 71  RDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVST 126
              T  + + RG   +H F       EY V D  ++VKV P++  +   L   LS     
Sbjct: 108 ---TGEYTE-RGIKGLHGF-----MREYFVDDPEYLVKVPPSL-ADVGVLLEPLSV---- 153

Query: 127 GVGAAWRTANVEVGS--------TVVIFGLGSIGL-----AVAEGARLCGATRIIGVDVI 173
            V  A   A   V            ++ G G IGL         G  +    R    D  
Sbjct: 154 -VEKAIEQA-EAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR---RDPP 208

Query: 174 SEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK 233
             K +I +  G T +VNS       V         G  D   E  G+  L  EA      
Sbjct: 209 DPKADIVEELGAT-YVNSSKTPVAEVK------LVGEFDLIIEATGVPPLAFEALPALAP 261

Query: 234 GWGKTIVLGVDQPGSQLSLSSFE-----VLHSGKILMGSLFGGLK----AKSDIPILLKR 284
             G  I+ GV   G +  +   E     VL + K L+GS+    +    A  D+     R
Sbjct: 262 N-GVVILFGVPGGGREFEVDGGELNRDLVLGN-KALVGSVNANKRHFEQAVEDLAQWKYR 319

Query: 285 YMDKELELDKFVTHEMKFEEINSAFD 310
           +      L++ +T  +  EE   A  
Sbjct: 320 WPGV---LERLITRRVPLEEFAEALT 342

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 37/233 (15%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P ILG +  GVVE+VG  V  V  G  V+ +    C  C  C + + NLC+ +      
Sbjct: 57  LPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQY------ 110

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
                       + GE +        ++EY  +   +++ +   +    A        T 
Sbjct: 111 -----------GILGEHVDGG-----YAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLT- 153

Query: 128 VGAAWRT----ANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
              AW      A +  G TV++ G GS +G A  + A+L GAT I       +K E  K 
Sbjct: 154 ---AWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGS-EDKLERAKE 209

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKG 234
            G    ++ +    +   + + ++T   G D   E VG A+  +++     +G
Sbjct: 210 LGADYVIDYRK---EDFVREVRELTGKRGVDVVVEHVGAATW-EKSLKSLARG 258

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 84/330 (25%), Positives = 134/330 (40%), Gaps = 66/330 (20%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAF 61
           DF     RILGHE IG+V+ VG  V  +  GD V I  F   C  C  C + +  LC   
Sbjct: 48  DFGDKTGRILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLC--- 104

Query: 62  PFKISPWMPRDQTSRFKDLR--GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL 119
                           + ++  G T+         +E  ++   + VKV   + P +A  
Sbjct: 105 ----------------RSVKNAGYTVD-----GGMAEQCIVTADYAVKVPEGLDPAQASS 143

Query: 120 LSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKF 177
           ++C GV+T    A + + ++ G  + I+G G +G LA+     +  A ++I VD+  +K 
Sbjct: 144 ITCAGVTTY--KAIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKL 200

Query: 178 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK 237
            + K  G    +NSK   D      II    GGA          +   +A    R G G+
Sbjct: 201 ALAKEVGADLTINSKRVED---VAKIIQEKTGGAHAAVVTAVAKAAFNQAVDAVRAG-GR 256

Query: 238 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG-----------GLKAKSDIPILLKRYM 286
            + +G+  P   + LS   ++  G  ++GSL G           G + K  +P +  R  
Sbjct: 257 VVAVGL--PPESMDLSIPRLVLDGIEVVGSLVGTRQDLEEAFQFGAEGKV-VPKVQLR-- 311

Query: 287 DKELELDKFVTHEMKFEEINSAFDLLIKGK 316
                           E+IN  FD + +GK
Sbjct: 312 --------------PLEDINDIFDEMEQGK 327

Length = 338

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 22/107 (20%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
           +  P   P ILGHE  G+VE VG  V G+  GD V+ + L  C +C  CR  + NLC   
Sbjct: 24  EPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVVYPLIPCGKCAACREGRENLCPN- 82

Query: 62  PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 108
                               G  +        F+EY V+   ++V +
Sbjct: 83  ----------------GKFLGVHLD-----GGFAEYVVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 64/313 (20%), Positives = 121/313 (38%), Gaps = 48/313 (15%)

Query: 6   AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 65
           A +PR++GHE  GV+++VGE VD    G+ V    +  C  C  C   K N+C++    +
Sbjct: 51  AKYPRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSL---V 107

Query: 66  SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 125
              + RD                     FSEY V+   +  ++   +    A +    V 
Sbjct: 108 VLGVHRD-------------------GGFSEYAVVPAKNAHRIPDAIADQYAVM----VE 144

Query: 126 TGVGAAWRTANVEV--GSTVVIFGLGSIGLAVAEG-ARLCGATRIIGVDVISEKFEIGKR 182
               AA  T           +I+G G +GL + +    +     +I  D I E+  + K 
Sbjct: 145 PFTIAANVTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204

Query: 183 FGVTEFVNSKNCGDKSVSQII----IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT 238
            G    +N+     + + + +    I  T        +     S+++EA         + 
Sbjct: 205 SGADWVINN---AQEPLGEALEEKGIKPT-----LIIDAACHPSILEEAVTLASPA-ARI 255

Query: 239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH 298
           +++G     S++         +GK L  S+F      +  P+++       ++ +K +TH
Sbjct: 256 VLMGFSSEPSEIVQQGI----TGKEL--SIFSSRLNANKFPVVIDWLSKGLIDPEKLITH 309

Query: 299 EMKFEEINSAFDL 311
              F+ +  A +L
Sbjct: 310 TFDFQHVADAIEL 322

Length = 339

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 75/328 (22%), Positives = 129/328 (39%), Gaps = 49/328 (14%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 68
           P  LGHE  G V   G      +   V++P  +  C EC  C++ +G +C          
Sbjct: 54  PLALGHEISGRVIQAGAGAASWIGKAVIVPAVIP-CGECELCKTGRGTIC---------- 102

Query: 69  MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 128
             R Q     D++G    H V  +      V+D A +      +P     +++  V+T  
Sbjct: 103 --RAQKMPGNDMQGGFASHIVVPAKG--LCVVDEARLAAAG--LPLEHVSVVADAVTTPY 156

Query: 129 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 188
            AA + A ++ G  V++ G G +G  + + A+  GA  ++ +D+  EK E+ K FG    
Sbjct: 157 QAAVQ-AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLT 214

Query: 189 VNSKNCGDKSVSQIIIDMTDGGADYC------------FECVGLASLVQEAYACCRKGWG 236
           +N K+   + V ++I         +             FEC G     + A +    G G
Sbjct: 215 LNPKDKSAREVKKLI-------KAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-G 266

Query: 237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDI-PILLKRYMDKELELDKF 295
             +V+G     ++  LS+    H+  +      G      D  P  L   +D +++L  F
Sbjct: 267 TLVVVGYTMAKTEYRLSNLMAFHARAL------GNWGCPPDRYPAALDLVLDGKIQLGPF 320

Query: 296 V-THEMKFEEINSAFDLLIKGKCLRCVI 322
           V    +  ++I   F      K  R  I
Sbjct: 321 VERRPL--DQIEHVFAAAHHHKLKRRAI 346

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 10/155 (6%)

Query: 93  SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLG 149
            ++EY +L  A +++V   +    A L   L+ G+      A R A +  G   ++ G G
Sbjct: 117 GYAEYMLLSEALLLRVPDGLSMEDAALTEPLAVGLH-----AVRRARLTPGEVALVIGCG 171

Query: 150 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG 209
            IGLAV    +  G   I+  D   E+  +    G    V+       +     +    G
Sbjct: 172 PIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGG 231

Query: 210 GA-DYCFECVGLASLVQEAYACCRKGWGKTIVLGV 243
                 FECVG   L+Q+       G G+ +V+GV
Sbjct: 232 PKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGV 265

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 55/250 (22%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 11  ILGHEAIGVVESVGENVDGVVE------GDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
           +LGHE +G V ++        +      G  V+      C  C  CR      C      
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCD----- 55

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCG 123
                     S  K         +     ++E+  L     +V V   +P   A    C 
Sbjct: 56  ----------SLRKYGHEALDSGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
            +T V AA   A    G  V++ G G +GL  A  A   GA R++  D   ++ E+   F
Sbjct: 106 TAT-VMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164

Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
           G T     +   ++        + +G G D   E  G  + V+        G G  ++ G
Sbjct: 165 GATALAEPEVLAERQGG-----LQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAG 218

Query: 243 VDQPGSQLSL 252
              PG  ++L
Sbjct: 219 SVFPGGPVAL 228

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 126 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 185
           TG       A V+ G TV +FG G +GL  A  A L GA+R+  VD + E+ ++ +  G 
Sbjct: 164 TGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA 222

Query: 186 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG 219
              ++     D    + I+ +  GG D   +CVG
Sbjct: 223 -IPIDFS---DGDPVEQILGLEPGGVDRAVDCVG 252

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 69/327 (21%), Positives = 125/327 (38%), Gaps = 71/327 (21%)

Query: 7   VFPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKI 65
            +PR+ GHE +G +++VGE V     GD V +      C  C  CR              
Sbjct: 53  SYPRVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACR-------------- 98

Query: 66  SPWMPRDQTSRFKDLRGETIH----HFVSVSS---FSEYTVLDIAHVVKVDPTVPPNRAC 118
                          RG+ +H        V+    ++EY +     + ++   +    A 
Sbjct: 99  ---------------RGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAA 143

Query: 119 LLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEK 176
            L C GV+T    A R +  + G  V + G+G +G LAV + A   G  R + +   S+K
Sbjct: 144 PLLCAGVTT--FNALRNSGAKPGDLVAVQGIGGLGHLAV-QYAAKMG-FRTVAISRGSDK 199

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG 236
            ++ ++ G   ++++     + V++ + ++  GGA         A  +           G
Sbjct: 200 ADLARKLGAHHYIDTS---KEDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-G 253

Query: 237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFV 296
           K ++LG    G  +++S  +++   K + G   G               +D E  L    
Sbjct: 254 KLLILGAA--GEPVAVSPLQLIMGRKSIHGWPSG-------------TALDSEDTLKFSA 298

Query: 297 TH-------EMKFEEINSAFDLLIKGK 316
            H           E+ N A+D ++ GK
Sbjct: 299 LHGVRPMVETFPLEKANEAYDRMMSGK 325

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 58/192 (30%), Positives = 84/192 (43%), Gaps = 31/192 (16%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
           P I G E  GVVE VG++V GV +GD VV+ + + D T C  C S    LC         
Sbjct: 55  PHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGT-CDMCLSGNEMLC--------- 104

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
                        R   I   VS   ++EY V+   ++ K+  ++    A  L     T 
Sbjct: 105 -------------RNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTA 151

Query: 128 VGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 186
             A  +TA +  G TVV+FG  G+ G+   + A++ GA  I     +S K +  K FG  
Sbjct: 152 YHAL-KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVI----AVSRK-DWLKEFGAD 205

Query: 187 EFVNSKNCGDKS 198
           E V+     +K 
Sbjct: 206 EVVDYDEVEEKV 217

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 41/313 (13%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKIS 66
           +P I GHE +G+   VG+NV    EGD V +   +  C  C  C     N C    F  +
Sbjct: 60  YPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYN 119

Query: 67  PWMPRDQTSRFKD-LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR-ACLLSCGV 124
                   SR  D  R +          +S+  V+D   V+ +   +P +  A LL  G+
Sbjct: 120 --------SRSSDGTRNQ--------GGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGI 163

Query: 125 STGVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEK-FEIGKR 182
           +      +     E G  + + GLG +G +AV  G       R+  +   SEK  E   R
Sbjct: 164 TVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREAIDR 221

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
            G   F+ + +      SQ + +   G  D+  + V     +   ++  +   GK + LG
Sbjct: 222 LGADSFLVTTD------SQKMKEAV-GTMDFIIDTVSAEHALLPLFSLLKVS-GKLVALG 273

Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSD-IPILLKRYMDKELELDKFVTHEMK 301
           +  P   L L  F ++   K++ GS  GG+K   + +    K  +  ++EL       +K
Sbjct: 274 L--PEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIEL-------IK 324

Query: 302 FEEINSAFDLLIK 314
             +INSA D L K
Sbjct: 325 MSDINSAMDRLAK 337

Length = 375

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 57/325 (17%), Positives = 97/325 (29%), Gaps = 85/325 (26%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
             FP   P I GH+  GVV +VG  V G   GD V                         
Sbjct: 53  AAFPLTLPLIPGHDVAGVVVAVGPGVTGFKVGDEVF----------------------GM 90

Query: 62  PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
                                     F    +++EY V+    +      +    A    
Sbjct: 91  TP------------------------FTRGGAYAEYVVVPADELALKPANLSFEEA---- 122

Query: 122 CGVSTGVGAAWRT----ANVEVGSTVVIFG-LGSIG-----LAVAEGARLCGATRIIGVD 171
             +      AW+       ++ G TV+I G  G +G     LA A GAR+          
Sbjct: 123 AALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATAS----- 177

Query: 172 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 231
             +   +  +  G  E ++      +  +        GG D   + VG  +L   + A  
Sbjct: 178 --AANADFLRSLGADEVIDYTKGDFERAAAP------GGVDAVLDTVGGETL-ARSLALV 228

Query: 232 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE 291
           + G G+  ++ +  P      +    + +G + +      L         L   ++   +
Sbjct: 229 KPG-GR--LVSIAGPPPAEQAAKRRGVRAGFVFVEPDGEQLAE-------LAELVEAG-K 277

Query: 292 LDKFVTHEMKFEEINSAFDLLIKGK 316
           L   V      E+   A + L  G 
Sbjct: 278 LRPVVDRVFPLEDAAEAHERLESGH 302

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 56.0 bits (135), Expect = 8e-09
 Identities = 54/185 (29%), Positives = 78/185 (42%), Gaps = 29/185 (15%)

Query: 11  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 70
           +LGHE  G V   G +V+ +  GD+V   F   C  C  C+     +C      ++P   
Sbjct: 64  VLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVC----LNVNPARA 119

Query: 71  RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNR---------ACL 119
                 + D+ G        V   SEY ++  A  +++K      P+R           +
Sbjct: 120 GAAYG-YVDMGG-------WVGGQSEYVMVPYADFNLLKF-----PDRDQALEKIRDLTM 166

Query: 120 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 179
           LS    TG   A  TA V  GSTV I G G +GLA A  A+L GA  +I  D+   +   
Sbjct: 167 LSDIFPTGYHGAV-TAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQ 225

Query: 180 GKRFG 184
            + FG
Sbjct: 226 ARSFG 230

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 51/214 (23%), Positives = 78/214 (36%), Gaps = 53/214 (24%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
           +P + G +  GVV +VG  V G   GD V  H                            
Sbjct: 56  YPHVPGVDGAGVVVAVGAKVTGWKVGDRVAYH---------------------------- 87

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
                  S  +              SF+EYTV+D   V+ +  ++    A  L C   T 
Sbjct: 88  ------ASLARG------------GSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTA 129

Query: 128 VGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 186
             A ++   +E G T++I G  G +G    + A+  G  R+I        FE  K  G  
Sbjct: 130 YQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVI-TTCSKRNFEYVKSLGAD 187

Query: 187 EFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVG 219
             ++     D+ V + I ++T G G D   + VG
Sbjct: 188 HVIDYN---DEDVCERIKEITGGRGVDAVLDTVG 218

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 65/275 (23%), Positives = 98/275 (35%), Gaps = 49/275 (17%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
            P   P I   +  G V +VGE V     GD V+P F  +                    
Sbjct: 53  PPVKDPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPN-------------------- 92

Query: 64  KISPWM--PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
               W+  P         L G  I         +EY VL    +V+    +    A  L 
Sbjct: 93  ----WLDGPPTAEDEASALGG-PIDGV-----LAEYVVLPEEGLVRAPDHLSFEEAATLP 142

Query: 122 C-GVSTGVGAAWR----TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 176
           C G++     AW        ++ G TV++ G G + L   + A+  GA R+I      EK
Sbjct: 143 CAGLT-----AWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEK 196

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW 235
            E  K  G    +N +   D    + ++ +T G G D+  E  G  +L Q +      G 
Sbjct: 197 LERAKALGADHVINYRTTPD--WGEEVLKLTGGRGVDHVVEVGGPGTLAQ-SIKAVAPG- 252

Query: 236 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 270
           G   ++G    G +  +    +L  G  L G   G
Sbjct: 253 GVISLIGF-LSGFEAPVLLLPLLTKGATLRGIAVG 286

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 53.3 bits (129), Expect = 5e-08
 Identities = 50/213 (23%), Positives = 74/213 (34%), Gaps = 55/213 (25%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 68
           P + G E  GVVE+VGE V G   GD V           V                    
Sbjct: 58  PFVPGSEVAGVVEAVGEGVTGFKVGDRV-----------VA------------------- 87

Query: 69  MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 128
                                    F+E  V+  A V  +   +    A  L     T  
Sbjct: 88  -------------------LTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAY 128

Query: 129 GAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            A  R A ++ G TV++ G  G +GLA  + A+  GA R+I      EK  + +  G   
Sbjct: 129 HALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADH 187

Query: 188 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVG 219
            ++     D  + + +  +T G G D  ++ VG
Sbjct: 188 VIDY---RDPDLRERVKALTGGRGVDVVYDPVG 217

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 52.8 bits (128), Expect = 7e-08
 Identities = 53/230 (23%), Positives = 83/230 (36%), Gaps = 79/230 (34%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
           +P   P +LG E  GVVE+VG  V G   GD V                       A P 
Sbjct: 50  YPLPLPFVLGVEGAGVVEAVGPGVTGFKVGDRV---------------------AYAGPP 88

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                                        +++EY V+  + +VK    +P         G
Sbjct: 89  ----------------------------GAYAEYRVVPASRLVK----LPD--------G 108

Query: 124 VSTGVGAAW------------RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV 170
           +S    AA              T  V+ G TV++    G +GL + + A+  GA  +IG 
Sbjct: 109 ISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGT 167

Query: 171 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVG 219
               EK E+ +  G    +N +   D+   + + ++T G G D  ++ VG
Sbjct: 168 VSSEEKAELARAAGADHVINYR---DEDFVERVREITGGRGVDVVYDGVG 214

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCS 59
             A    +LGHEA+G VE VG  V+ +  GD VV+P F   C  C  C+     +C 
Sbjct: 49  TGAEPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVP-FNVACGRCRNCKRGLTGVCL 104

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 43/185 (23%), Positives = 69/185 (37%), Gaps = 21/185 (11%)

Query: 9   PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 68
           P +LGHE IG +     +  G+ EG  V  +    C  C  C S   N C+   F  S  
Sbjct: 60  PMVLGHEVIGKIVHS--DSSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGS-- 115

Query: 69  MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 128
                   F  + G           F+ Y V+D A  +              +  ++  +
Sbjct: 116 -----AMYFPHVDG----------GFTRYKVVDTAQCIPYPEKADEKVMAF-AEPLAVAI 159

Query: 129 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 188
            AA +  ++  G  V + G+G IG  +    +  GA  I+  DV      + +  G  + 
Sbjct: 160 HAAHQAGDL-QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKL 218

Query: 189 VNSKN 193
           VN +N
Sbjct: 219 VNPQN 223

Length = 343

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 58/230 (25%), Positives = 81/230 (35%), Gaps = 76/230 (33%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P ILG +  GVVE+VGE V     GD V            GC                 
Sbjct: 57  LPAILGCDVAGVVEAVGEGVTRFRVGDEVY-----------GC----------------- 88

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD---IAHVVKVDPTVPPNRACLLSCGV 124
                       L+G          S +EY V+D   +A         P N +   +  +
Sbjct: 89  ------AGGLGGLQG----------SLAEYAVVDARLLALK-------PANLSMREAAAL 125

Query: 125 STGVGAAW----RTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVIS 174
                 AW      A V+ G TV+I     G+G +   LA A GAR+  AT        S
Sbjct: 126 PLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVY-AT------ASS 178

Query: 175 EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL 223
           EK    +  G    +  +     +V + + + T G G D  F+ VG  +L
Sbjct: 179 EKAAFARSLGADPIIYYRE----TVVEYVAEHTGGRGFDVVFDTVGGETL 224

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 49.9 bits (119), Expect = 7e-07
 Identities = 73/310 (23%), Positives = 118/310 (38%), Gaps = 36/310 (11%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKIS 66
           +P + GHE +G+V  +G+NV    EGD V +   +  C  C  C     N C    F  +
Sbjct: 66  YPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYN 125

Query: 67  PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 126
             +  D T  +                +S+  V+D   V++    +P +    L C   T
Sbjct: 126 S-IGHDGTKNY--------------GGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGIT 170

Query: 127 GVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 185
                      E G  + + GLG +G +AV  G        +I      E   I  R G 
Sbjct: 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI-NRLGA 229

Query: 186 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 245
             F+ S +      +        G  DY  + V     +       +   GK I LG+  
Sbjct: 230 DSFLVSTDPEKMKAAI-------GTMDYIIDTVSAVHALGPLLGLLKVN-GKLITLGL-- 279

Query: 246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSD-IPILLKRYMDKELELDKFVTHEMKFEE 304
           P   L L  F ++   K++ GS  GG+K   + +    K  +  ++EL       ++ +E
Sbjct: 280 PEKPLELPIFPLVLGRKLVGGSDIGGIKETQEMLDFCAKHNITADIEL-------IRMDE 332

Query: 305 INSAFDLLIK 314
           IN+A + L K
Sbjct: 333 INTAMERLAK 342

Length = 360

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 43/164 (26%), Positives = 58/164 (35%), Gaps = 45/164 (27%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
           P   P  LG+EA GVVE+VG  V G   GD V                            
Sbjct: 54  PPPLPARLGYEAAGVVEAVGAGVTGFAVGDRVS--------------------------- 86

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 124
           + P     Q                   +++EY ++  A VVK+   +    A  L    
Sbjct: 87  VIPAADLGQ-----------------YGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQY 129

Query: 125 STGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI 167
            T  GA    A +  G +V+I     S+GLA  + A   GAT I
Sbjct: 130 LTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVI 173

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 89  VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVI 145
           V VS + EY + D   + K+DP+  P  A L   G+  G+ A +        + G TVV+
Sbjct: 98  VGVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM-PGLTAYFGLLDIGQPKAGETVVV 156

Query: 146 FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTEFVNSKNCGDKSVSQII 203
               G++G  V + A+L G  R++G+   +EK +      G    ++ K    +  +Q +
Sbjct: 157 SAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYK---AEDFAQAL 212

Query: 204 IDMTDGGADYCFECVG 219
            +    G D  FE VG
Sbjct: 213 KEACPKGIDVYFENVG 228

Length = 340

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 52/218 (23%), Positives = 74/218 (33%), Gaps = 50/218 (22%)

Query: 8   FPRILGHEAIGVVESVGEN--VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 65
           FP + GHE +G+VE   E   V   V G++ I      C  C  CR      C       
Sbjct: 50  FPGVPGHEFVGIVEEGPEAELVGKRVVGEINIA-----CGRCEYCRRGLYTHC------- 97

Query: 66  SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 125
               P        D  G          +F+EY  L + ++  V   VP  +A      V 
Sbjct: 98  ----PNRTVLGIVDRDG----------AFAEYLTLPLENLHVVPDLVPDEQA------VF 137

Query: 126 T----GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
                          +  G  V + G G +GL +A+   L G   ++ V   SEK  + +
Sbjct: 138 AEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALAR 196

Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG 219
           R GV            +V     +   GG D   E  G
Sbjct: 197 RLGVE-----------TVLPDEAESEGGGFDVVVEATG 223

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 40/164 (24%), Positives = 59/164 (35%), Gaps = 32/164 (19%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
              FPRI G + +G V +VGE VD    G+ V+                           
Sbjct: 74  TLSFPRIQGADIVGRVVAVGEGVDTARIGERVL--------------------------- 106

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 124
           + P +         D+    I        F+EYTV+   +   V+  +         C  
Sbjct: 107 VDPSIRDPPEDDPADID--YIGSERD-GGFAEYTVVPAENAYPVNSPLSDVELATFPCSY 163

Query: 125 STGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI 167
           ST      R A V  G TV++ G  G +G A+ + A+  GA  I
Sbjct: 164 STAENMLER-AGVGAGETVLVTGASGGVGSALVQLAKRRGAIVI 206

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 4  FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 39
               P + G+E +G V  VG  V  +  GD VIP 
Sbjct: 59 TTPEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPL 94

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 62/220 (28%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
               P + G +  GVVE+VGE VDG+  GD V   +L +    +G   ++G         
Sbjct: 54  LPPLPYVPGSDGAGVVEAVGEGVDGLKVGDRV---WLTN----LGWGRRQG--------- 97

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 124
                                       + +EY V+    +V +   V          G 
Sbjct: 98  ----------------------------TAAEYVVVPADQLVPLPDGVSF------EQGA 123

Query: 125 STGVGA--AWRT----ANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKF 177
           + G+ A  A+R     A  + G TV++ G  G++G A  + AR  GA R+I     +E  
Sbjct: 124 ALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGA 182

Query: 178 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFE 216
           E+ ++ G     N +    + ++  I+  T G G D   E
Sbjct: 183 ELVRQAGADAVFNYR---AEDLADRILAATAGQGVDVIIE 219

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 78/315 (24%), Positives = 129/315 (40%), Gaps = 46/315 (14%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKIS 66
           +P + GHE +G V  VG +V     GD+V +   +  C EC  C+S     C+    +I 
Sbjct: 63  YPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNK---RI- 118

Query: 67  PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 126
            W   D  +  K  +G           F+   V+D   VVK+   + P +A  L C   T
Sbjct: 119 -WSYNDVYTDGKPTQG----------GFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVT 167

Query: 127 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS----EKFEIGKR 182
                      + G    I GLG +G    + A+  G      V VIS    ++ E  + 
Sbjct: 168 VYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHH----VTVISSSDKKREEALEH 223

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGG--ADYCFECVGLASLVQEAYACCRKGWGKTIV 240
            G  +++         VS    +M +     DY  + V +   + E Y    K  GK I+
Sbjct: 224 LGADDYL---------VSSDAAEMQEAADSLDYIIDTVPVFHPL-EPYLSLLKLDGKLIL 273

Query: 241 LGV-DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHE 299
           +GV + P   L   +  ++   K++ GS  G +K   ++   L+   +K L     +   
Sbjct: 274 MGVINTP---LQFVTPMLMLGRKVITGSFIGSMKETEEM---LEFCKEKGL---TSMIEV 324

Query: 300 MKFEEINSAFDLLIK 314
           +K + +N+AF+ L K
Sbjct: 325 VKMDYVNTAFERLEK 339

Length = 357

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 43/159 (27%), Positives = 58/159 (36%), Gaps = 17/159 (10%)

Query: 81  RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW----RTAN 136
            G+ +     V   +EY  LD  ++V V   V    A    C V   V  A+    R A 
Sbjct: 81  VGDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEA---VCLVLNYV-TAYQMLHRAAK 136

Query: 137 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 195
           V  G  V+I G  G +G A+ E A L GA  + G           +  G T         
Sbjct: 137 VLTGQRVLIHGASGGVGQALLELALLAGAE-VYGTAS-ERNHAALRELGATPIDYR---- 190

Query: 196 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 234
            K     ++  T GG D  F+ VG  S  +   A    G
Sbjct: 191 TKDWLPAML--TPGGVDVVFDGVGGESYEESYAALAPGG 227

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 48/237 (20%), Positives = 70/237 (29%), Gaps = 70/237 (29%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
               FP I G +  G V +VG  V     GD V            G    KG        
Sbjct: 54  LGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVF-----------GRLPPKG-------- 94

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                             G          + +EY V   + + K    V    A  L   
Sbjct: 95  -----------------GG----------ALAEYVVAPESGLAKKPEGVSFEEAAALPVA 127

Query: 124 VSTGVGAAWRTANVEVGSTVVIFG----LGSIG--LAVAEGARLCGATRIIGVDVISEKF 177
             T + A      V+ G  V+I G    +G+    +A A GA       + GV   +   
Sbjct: 128 GLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA------HVTGVC-STRNA 180

Query: 178 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA--DYCFECVGLASLVQEAYACCR 232
           E+ +  G  E ++             + +T GG   D  F+ VG +      Y    
Sbjct: 181 ELVRSLGADEVIDYTTED-------FVALTAGGEKYDVIFDAVGNSPF--SLYRASL 228

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGV 170
           G TV+I GLG IG  +A  A+  G  R+IGV
Sbjct: 134 GKTVLIVGLGDIGREIARRAKAFGM-RVIGV 163

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 8  FPRILGHEAIGVVESVGENVDGVVEGDVVIP 38
           P + G+E +GVV  VG  V G++ G  V+P
Sbjct: 56 LPAVPGNEGVGVVVEVGSGVSGLLVGQRVLP 86

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.98
PTZ00354	334	alcohol dehydrogenase; Provisional	99.98
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.98
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.98
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.98
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.97
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.97
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.97
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.97
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.97
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.97
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.97
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.97
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.97
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.97
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.97
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.97
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.96
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.96
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.96
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.96
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.96
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.96
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.96
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.96
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.96
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.96
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.95
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.95
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.95
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.95
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.95
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.95
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.94
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.93
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.78
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.7
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.48
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.35
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.26
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.66
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.53
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.35
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.19
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.19
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.17
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.15
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.1
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.04
PLN02494	477	adenosylhomocysteinase	97.95
PRK08324	681	short chain dehydrogenase; Validated	97.94
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.89
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	97.82
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.75
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.67
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.62
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.61
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.59
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.57
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.56
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.53
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.42
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.42
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.39
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.31
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.3
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.28
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.2
PRK05693	274	short chain dehydrogenase; Provisional	97.19
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.17
PRK05993	277	short chain dehydrogenase; Provisional	97.13
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.12
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.09
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.06
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.04
TIGR00438	188	rrmJ cell division protein FtsJ.	97.03
PRK00536	262	speE spermidine synthase; Provisional	97.02
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.02
PRK06182	273	short chain dehydrogenase; Validated	96.99
PLN03209	576	translocon at the inner envelope of chloroplast su	96.96
PRK08177	225	short chain dehydrogenase; Provisional	96.95
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.95
PRK12742	237	oxidoreductase; Provisional	96.93
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	96.92
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.9
PRK06139	330	short chain dehydrogenase; Provisional	96.86
PRK06949	258	short chain dehydrogenase; Provisional	96.86
PRK08265	261	short chain dehydrogenase; Provisional	96.86
PRK07326	237	short chain dehydrogenase; Provisional	96.86
PRK08017	256	oxidoreductase; Provisional	96.86
PRK07109	334	short chain dehydrogenase; Provisional	96.83
PRK07806	248	short chain dehydrogenase; Provisional	96.79
PRK06057	255	short chain dehydrogenase; Provisional	96.78
PRK07060	245	short chain dehydrogenase; Provisional	96.77
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.75
PLN02366	308	spermidine synthase	96.74
COG4122	219	Predicted O-methyltransferase [General function pr	96.73
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	96.73
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.72
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.71
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.71
PRK12939	250	short chain dehydrogenase; Provisional	96.69
PRK14967	223	putative methyltransferase; Provisional	96.68
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.67
PRK12829	264	short chain dehydrogenase; Provisional	96.67
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.66
PRK05866	293	short chain dehydrogenase; Provisional	96.66
PRK05872	296	short chain dehydrogenase; Provisional	96.65
PRK07825	273	short chain dehydrogenase; Provisional	96.64
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.64
PRK07402	196	precorrin-6B methylase; Provisional	96.62
PRK07814	263	short chain dehydrogenase; Provisional	96.6
PRK00811	283	spermidine synthase; Provisional	96.6
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.58
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.57
PRK06841	255	short chain dehydrogenase; Provisional	96.56
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.56
PRK07904	253	short chain dehydrogenase; Provisional	96.56
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.55
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.54
PRK05867	253	short chain dehydrogenase; Provisional	96.54
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.53
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.52
PRK09291	257	short chain dehydrogenase; Provisional	96.51
PRK07831	262	short chain dehydrogenase; Provisional	96.51
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.51
PRK06180	277	short chain dehydrogenase; Provisional	96.5
PRK06196	315	oxidoreductase; Provisional	96.45
PRK11207	197	tellurite resistance protein TehB; Provisional	96.44
PRK07062	265	short chain dehydrogenase; Provisional	96.43
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.42
PRK12828	239	short chain dehydrogenase; Provisional	96.42
PRK08339	263	short chain dehydrogenase; Provisional	96.42
PRK07677	252	short chain dehydrogenase; Provisional	96.41
PRK06500	249	short chain dehydrogenase; Provisional	96.41
PRK07832	272	short chain dehydrogenase; Provisional	96.41
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	96.39
PRK07478	254	short chain dehydrogenase; Provisional	96.39
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.38
PRK04148	134	hypothetical protein; Provisional	96.36
PRK06953	222	short chain dehydrogenase; Provisional	96.35
PLN02780	320	ketoreductase/ oxidoreductase	96.34
PRK07576	264	short chain dehydrogenase; Provisional	96.31
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.29
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.29
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.28
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.28
CHL00194	317	ycf39 Ycf39; Provisional	96.27
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	96.27
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.26
PRK06128	300	oxidoreductase; Provisional	96.26
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.26
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.25
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.25
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.24
PRK05717	255	oxidoreductase; Validated	96.23
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.23
PRK06484	520	short chain dehydrogenase; Validated	96.23
PRK07454	241	short chain dehydrogenase; Provisional	96.22
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.21
PRK01581	374	speE spermidine synthase; Validated	96.21
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.2
PRK09072	263	short chain dehydrogenase; Provisional	96.19
PRK05875	276	short chain dehydrogenase; Provisional	96.19
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.19
PRK06172	253	short chain dehydrogenase; Provisional	96.18
PRK07063	260	short chain dehydrogenase; Provisional	96.18
PRK07890	258	short chain dehydrogenase; Provisional	96.17
PLN02476	278	O-methyltransferase	96.16
PRK06181	263	short chain dehydrogenase; Provisional	96.16
PRK08643	256	acetoin reductase; Validated	96.16
PRK06138	252	short chain dehydrogenase; Provisional	96.15
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.14
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.14
PRK06194	287	hypothetical protein; Provisional	96.12
PRK06179	270	short chain dehydrogenase; Provisional	96.11
PRK07774	250	short chain dehydrogenase; Provisional	96.11
PRK07035	252	short chain dehydrogenase; Provisional	96.09
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.09
PRK04457	262	spermidine synthase; Provisional	96.09
PRK08267	260	short chain dehydrogenase; Provisional	96.08
PRK05854	313	short chain dehydrogenase; Provisional	96.08
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.07
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.06
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.06
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.06
PRK09186	256	flagellin modification protein A; Provisional	96.04
PRK06483	236	dihydromonapterin reductase; Provisional	96.04
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.04
PRK08628	258	short chain dehydrogenase; Provisional	96.04
PRK08251	248	short chain dehydrogenase; Provisional	96.03
PRK06198	260	short chain dehydrogenase; Provisional	96.02
PRK09242	257	tropinone reductase; Provisional	96.02
PRK07024	257	short chain dehydrogenase; Provisional	96.02
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.01
PRK06482	276	short chain dehydrogenase; Provisional	96.01
PRK06197	306	short chain dehydrogenase; Provisional	96.0
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	95.99
PRK08263	275	short chain dehydrogenase; Provisional	95.98
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.98
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.96
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.96
PLN02253	280	xanthoxin dehydrogenase	95.95
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.94
PRK06914	280	short chain dehydrogenase; Provisional	95.94
PRK06125	259	short chain dehydrogenase; Provisional	95.93
PRK08862	227	short chain dehydrogenase; Provisional	95.93
PRK08618	325	ornithine cyclodeaminase; Validated	95.93
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	95.92
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.92
PRK06114	254	short chain dehydrogenase; Provisional	95.91
PRK08703	239	short chain dehydrogenase; Provisional	95.91
PRK07067	257	sorbitol dehydrogenase; Provisional	95.9
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	95.9
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	95.9
PRK08589	272	short chain dehydrogenase; Validated	95.89
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.89
PLN02823	336	spermine synthase	95.87
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.86
PRK12937	245	short chain dehydrogenase; Provisional	95.85
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.85
PRK12367	245	short chain dehydrogenase; Provisional	95.85
PRK06101	240	short chain dehydrogenase; Provisional	95.84
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.84
PLN03139	386	formate dehydrogenase; Provisional	95.84
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.84
PRK08317	241	hypothetical protein; Provisional	95.83
PRK10258	251	biotin biosynthesis protein BioC; Provisional	95.83
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.82
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	95.82
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.82
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.81
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	95.8
PRK07985	294	oxidoreductase; Provisional	95.79
PRK07574	385	formate dehydrogenase; Provisional	95.79
PRK05876	275	short chain dehydrogenase; Provisional	95.79
PRK10538	248	malonic semialdehyde reductase; Provisional	95.78
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.77
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	95.76
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.76
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.76
PRK06701	290	short chain dehydrogenase; Provisional	95.76
PRK07856	252	short chain dehydrogenase; Provisional	95.75
PRK08226	263	short chain dehydrogenase; Provisional	95.74
PRK06398	258	aldose dehydrogenase; Validated	95.74
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.72
PRK06720	169	hypothetical protein; Provisional	95.7
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.7
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.7
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	95.7
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.7
PRK07074	257	short chain dehydrogenase; Provisional	95.69
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.69
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.68
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.68
PRK08264	238	short chain dehydrogenase; Validated	95.67
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.67
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	95.67
PRK07577	234	short chain dehydrogenase; Provisional	95.66
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.64
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.64
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.63
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	95.63
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	95.63
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.62
PRK05884	223	short chain dehydrogenase; Provisional	95.62
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.62
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.61
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.61
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.61
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.6
PLN00203	519	glutamyl-tRNA reductase	95.59
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.59
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.56
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.56
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	95.55
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.55
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	95.54
PRK06484	520	short chain dehydrogenase; Validated	95.53
PRK06849	389	hypothetical protein; Provisional	95.53
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	95.52
PLN02244	340	tocopherol O-methyltransferase	95.52
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	95.51
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	95.51
PRK04266	226	fibrillarin; Provisional	95.49
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.48
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.48
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.47
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	95.46
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.44
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.43
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.42
PRK06940	275	short chain dehydrogenase; Provisional	95.41
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.41
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.4
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.39
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.37
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	95.34
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.33
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.31
PRK08219	227	short chain dehydrogenase; Provisional	95.31
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.3
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.29
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.29
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.28
PRK06523	260	short chain dehydrogenase; Provisional	95.28
PRK08303	305	short chain dehydrogenase; Provisional	95.27
PRK07791	286	short chain dehydrogenase; Provisional	95.27
PRK12743	256	oxidoreductase; Provisional	95.26
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.25
PRK05650	270	short chain dehydrogenase; Provisional	95.25
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	95.24
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	95.24
PRK13243	333	glyoxylate reductase; Reviewed	95.23
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.2
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.2
PLN02589	247	caffeoyl-CoA O-methyltransferase	95.2
PRK07775	274	short chain dehydrogenase; Provisional	95.19
PRK12747	252	short chain dehydrogenase; Provisional	95.19
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.18
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.16
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	95.16
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.15
PRK07102	243	short chain dehydrogenase; Provisional	95.15
PLN03075	296	nicotianamine synthase; Provisional	95.15
PLN02233	261	ubiquinone biosynthesis methyltransferase	95.13
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.12
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	95.09
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.08
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.08
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.05
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.02
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	95.02
PRK08328	231	hypothetical protein; Provisional	95.01
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	94.98
PRK08278	273	short chain dehydrogenase; Provisional	94.98
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	94.98
PLN02928	347	oxidoreductase family protein	94.97
PRK12938	246	acetyacetyl-CoA reductase; Provisional	94.97
PRK07340	304	ornithine cyclodeaminase; Validated	94.97
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.96
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.95
PRK07417	279	arogenate dehydrogenase; Reviewed	94.95
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.92
KOG0725	270	consensus Reductases with broad range of substrate	94.91
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	94.89
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.88
PRK09135	249	pteridine reductase; Provisional	94.88
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	94.87
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	94.86
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	94.84
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.84
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.77
PRK13255	218	thiopurine S-methyltransferase; Reviewed	94.76
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	94.75
PRK05855	582	short chain dehydrogenase; Validated	94.72
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	94.7
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	94.7
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	94.67
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	94.67
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	94.66
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	94.66
TIGR02415	254	23BDH acetoin reductases. One member of this famil	94.64
PLN00016	378	RNA-binding protein; Provisional	94.64
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	94.59
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.53
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	94.51
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.5
PRK06141	314	ornithine cyclodeaminase; Validated	94.49
PRK05562	223	precorrin-2 dehydrogenase; Provisional	94.45
PRK05599	246	hypothetical protein; Provisional	94.43
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.4
PTZ00146	293	fibrillarin; Provisional	94.4
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	94.39
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.39
PRK07201	657	short chain dehydrogenase; Provisional	94.38
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	94.37
PRK07069	251	short chain dehydrogenase; Validated	94.36
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	94.35
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	94.34
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.34
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.34
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.33
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	94.32
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.32
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	94.32
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	94.31
COG2910	211	Putative NADH-flavin reductase [General function p	94.28
PRK12746	254	short chain dehydrogenase; Provisional	94.26
PRK08936	261	glucose-1-dehydrogenase; Provisional	94.26
TIGR00452	314	methyltransferase, putative. Known examples to dat	94.25
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.24
PLN02256	304	arogenate dehydrogenase	94.24
PRK12480	330	D-lactate dehydrogenase; Provisional	94.22
PLN02490	340	MPBQ/MSBQ methyltransferase	94.22
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	94.18
KOG1252	362	consensus Cystathionine beta-synthase and related	94.18
PRK10901	427	16S rRNA methyltransferase B; Provisional	94.17
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.17
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	94.15
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	94.15
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.14
PRK08223	287	hypothetical protein; Validated	94.1
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.08
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.08
PRK14902	444	16S rRNA methyltransferase B; Provisional	94.07
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	94.05
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.05
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.02

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=4.1e-56  Score=385.00  Aligned_cols=317  Identities=44%  Similarity=0.790  Sum_probs=302.7

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      |.+|.+ +|.++|||.+|+|+++|++|+.++|||+|+..++-.|+.|.+|+.+++++|......+..|...+|++|++ -
T Consensus        49 G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~  126 (366)
T COG1062          49 GDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-G  126 (366)
T ss_pred             CCCCCC-CceecccccccEEEEecCCccccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-c
Confidence            567766 99999999999999999999999999999999999999999999999999999888888888899999999 8


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                      ++..+++|+|+++|+||.++++..++|++++.+++.++++.|...|.+.++...+++++|++|.|.|.|++|++++|-|+
T Consensus       127 ~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~  206 (366)
T COG1062         127 NGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAK  206 (366)
T ss_pred             CCcceeeeeccccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCc-cHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK-SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      ..|++++++++.+++|++++++||+++++|..+   . +..+.++++|++|+|++|||+|+...+++++.++.+ ||+.+
T Consensus       207 ~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~---~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~-~G~~v  282 (366)
T COG1062         207 AAGAGRIIAVDINPEKLELAKKFGATHFVNPKE---VDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSV  282 (366)
T ss_pred             HcCCceEEEEeCCHHHHHHHHhcCCceeecchh---hhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhc-CCeEE
Confidence            999999999999999999999999999999987   5 699999999999999999999999999999999999 59999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeE
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLR  319 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k  319 (326)
                      .+|........++++.++... .++.|+++|....+.|+.++++++.+|++++++++++.++|+||+|||+.+.+++.+|
T Consensus       283 ~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~IR  361 (366)
T COG1062         283 IIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSIR  361 (366)
T ss_pred             EEecCCCCceeecChHHeecc-ceEEEEeecCCccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCceee
Confidence            999988888888888888874 8999999998888899999999999999999999999999999999999999999999


Q ss_pred             EEEEe
Q 020435          320 CVIWM  324 (326)
Q Consensus       320 ~vv~~  324 (326)
                      .||.+
T Consensus       362 ~Vi~~  366 (366)
T COG1062         362 SVIRF  366 (366)
T ss_pred             EEecC
Confidence            88864

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.5e-54  Score=368.03  Aligned_cols=321  Identities=56%  Similarity=0.978  Sum_probs=303.1

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCC-CCCCCCCccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP-WMPRDQTSRFKD   79 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~g~~~~~~   79 (326)
                      |.+|...+|.|+|||.+|+|+++|.+|+++++||+|+..+.-.|++|.+|+.+..|+|......... ++..+|.+||+ 
T Consensus        54 g~~~~~~fP~IlGHEaaGIVESvGegV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-  132 (375)
T KOG0022|consen   54 GKDPEGLFPVILGHEAAGIVESVGEGVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-  132 (375)
T ss_pred             CCCccccCceEecccceeEEEEecCCccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-
Confidence            4567888999999999999999999999999999999999999999999999999999999887533 45569999999 


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHH
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la  159 (326)
                      ..|..++||+++.+|+||++++...+++|++..+++.++++.|.++|+|.|++..+++++|+++.|+|-|++|+++++-|
T Consensus       133 ~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Ga  212 (375)
T KOG0022|consen  133 CKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGA  212 (375)
T ss_pred             eCCCceEEecccccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      |+.|+.++|+++.++++.+.++++|+++.+|+.+ ..+...+.+.+.|++|+|+.|||+|+...+++++.+..++||+-+
T Consensus       213 ka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d-~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv  291 (375)
T KOG0022|consen  213 KAAGASRIIGVDINPDKFEKAKEFGATEFINPKD-LKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSV  291 (375)
T ss_pred             HhcCcccEEEEecCHHHHHHHHhcCcceecChhh-ccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEE
Confidence            9999999999999999999999999999999885 223688899999999999999999999999999999999999999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeE
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLR  319 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k  319 (326)
                      ++|....+..+++.++.++. ..++.|+.+|.+..++++..+++.+.+++++++++++|.+|+++|++||+.|.+++..|
T Consensus       292 ~iGv~~~~~~i~~~p~~l~~-GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~GksiR  370 (375)
T KOG0022|consen  292 VIGVAAAGQEISTRPFQLVT-GRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSIR  370 (375)
T ss_pred             EEEecCCCcccccchhhhcc-ccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceEE
Confidence            99998888899999888776 88899999999988999999999999999999999999999999999999999999999


Q ss_pred             EEEEe
Q 020435          320 CVIWM  324 (326)
Q Consensus       320 ~vv~~  324 (326)
                      .|+++
T Consensus       371 ~vl~~  375 (375)
T KOG0022|consen  371 CVLWM  375 (375)
T ss_pred             EEEeC
Confidence            99864

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=4.9e-54  Score=379.90  Aligned_cols=287  Identities=29%  Similarity=0.461  Sum_probs=261.9

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEee-cCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIP-HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD   79 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~   79 (326)
                      |..|...+|+|+|||.+|+|+++|++|++|++||||.+ .+..+|+.|.||+++++++|.+...   .|++.+|      
T Consensus        50 G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G------  120 (339)
T COG1064          50 GDWPVPKLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG------  120 (339)
T ss_pred             CCCCCCCCCccCCcceEEEEEEecCCCccCCCCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC------
Confidence            56787889999999999999999999999999999988 8889999999999999999999887   8888888      


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHH
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la  159 (326)
                                   +|+||+++++++++++|+++++++||.+.|+..|+|+++ +..++++|++|+|+|.|++|.+++|+|
T Consensus       121 -------------Gyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~A  186 (339)
T COG1064         121 -------------GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYA  186 (339)
T ss_pred             -------------cceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHH
Confidence                         999999999999999999999999999999999999975 559999999999999999999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      +++|+ +|+++++++++++.++++|++++++..+   .+..+.+++.    +|+++|+++ +..+...++.|+++ |+++
T Consensus       187 ka~ga-~Via~~~~~~K~e~a~~lGAd~~i~~~~---~~~~~~~~~~----~d~ii~tv~-~~~~~~~l~~l~~~-G~~v  256 (339)
T COG1064         187 KAMGA-EVIAITRSEEKLELAKKLGADHVINSSD---SDALEAVKEI----ADAIIDTVG-PATLEPSLKALRRG-GTLV  256 (339)
T ss_pred             HHcCC-eEEEEeCChHHHHHHHHhCCcEEEEcCC---chhhHHhHhh----CcEEEECCC-hhhHHHHHHHHhcC-CEEE
Confidence            99998 9999999999999999999999999766   6777777664    999999999 77799999999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-  318 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-  318 (326)
                      ++|.........++...++.+++++.||..++   +.|+++++++..+|++++.  +.+.++++++++|++.|.+++.. 
T Consensus       257 ~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~---~~d~~e~l~f~~~g~Ikp~--i~e~~~l~~in~A~~~m~~g~v~g  331 (339)
T COG1064         257 LVGLPGGGPIPLLPAFLLILKEISIVGSLVGT---RADLEEALDFAAEGKIKPE--ILETIPLDEINEAYERMEKGKVRG  331 (339)
T ss_pred             EECCCCCcccCCCCHHHhhhcCeEEEEEecCC---HHHHHHHHHHHHhCCceee--EEeeECHHHHHHHHHHHHcCCeee
Confidence            99986434445677888888999999998877   5799999999999977665  54699999999999999999876 


Q ss_pred             EEEEEeC
Q 020435          319 RCVIWMG  325 (326)
Q Consensus       319 k~vv~~~  325 (326)
                      |.||.+.
T Consensus       332 R~Vi~~~  338 (339)
T COG1064         332 RAVIDMS  338 (339)
T ss_pred             EEEecCC
Confidence            9998875

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.1e-51  Score=350.34  Aligned_cols=290  Identities=27%  Similarity=0.476  Sum_probs=259.4

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCccccccCCccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETI   85 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~   85 (326)
                      +.|+++|||.+|+|.++|++|++++|||||++-|..+|+.|..||.+++|+|++..+   .+. ..+|            
T Consensus        60 k~PmvlGHEssGiV~evG~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f---~atpp~~G------------  124 (354)
T KOG0024|consen   60 KKPMVLGHESSGIVEEVGDEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVF---CATPPVDG------------  124 (354)
T ss_pred             ccccccccccccchhhhcccccccccCCeEEecCCCccccchhhhCcccccCCcccc---ccCCCcCC------------
Confidence            589999999999999999999999999999999999999999999999999999997   433 3456            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                             ++++|++.++++++|+||++|+|++|++. +++++|||+ ++++++.|++|||+|||++|+++...||++|+.
T Consensus       125 -------~la~y~~~~~dfc~KLPd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~  195 (354)
T KOG0024|consen  125 -------TLAEYYVHPADFCYKLPDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGAS  195 (354)
T ss_pred             -------ceEEEEEechHheeeCCCCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCC
Confidence                   99999999999999999999999999999 799999975 779999999999999999999999999999999


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCC-CccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCG-DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~-~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +|+.++..+++++.++++|++.+.+..... .+.+.+.+++..+. .+|++|||.|....++.++.+++.+ |++++.++
T Consensus       196 ~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~g-Gt~vlvg~  274 (354)
T KOG0024|consen  196 DVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSG-GTVVLVGM  274 (354)
T ss_pred             cEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccC-CEEEEecc
Confidence            999999999999999999999887655511 13344455555555 7999999999999999999999998 99999986


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce--eEEE
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCV  321 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~--~k~v  321 (326)
                      .  ....+|++.....|++.+.|++   .+.+.++..+++++++|++++++++++.|+++++.+||+.+.+++.  .|++
T Consensus       275 g--~~~~~fpi~~v~~kE~~~~g~f---ry~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~  349 (354)
T KOG0024|consen  275 G--AEEIQFPIIDVALKEVDLRGSF---RYCNGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVI  349 (354)
T ss_pred             C--CCccccChhhhhhheeeeeeee---eeccccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEE
Confidence            4  5778899888888999999986   3335689999999999999999999999999999999999998874  4999


Q ss_pred             EEeCC
Q 020435          322 IWMGE  326 (326)
Q Consensus       322 v~~~~  326 (326)
                      +..++
T Consensus       350 i~~~~  354 (354)
T KOG0024|consen  350 ITGPE  354 (354)
T ss_pred             EeCCC
Confidence            98764

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.7e-47  Score=327.88  Aligned_cols=293  Identities=26%  Similarity=0.418  Sum_probs=256.4

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEE-eecCCCCCCCCccccCCCCCCCC--CCCCCCCCCCCCCCCccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCS--AFPFKISPWMPRDQTSRF   77 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~g~~~~   77 (326)
                      |..+...+|+|+|||.+|+|+++|++|++|++|||| +-....+|++|++|+.+.+++|+  ....   .|+..+|    
T Consensus        58 gdwg~s~~PlV~GHEiaG~VvkvGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~---~g~~~DG----  130 (360)
T KOG0023|consen   58 GDWGLSKYPLVPGHEIAGVVVKVGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTY---NGVYHDG----  130 (360)
T ss_pred             ccCCcccCCccCCceeeEEEEEECCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEec---cccccCC----
Confidence            345678899999999999999999999999999999 55666889999999999999999  5553   5555555    


Q ss_pred             cccCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHH
Q 020435           78 KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAE  157 (326)
Q Consensus        78 ~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~  157 (326)
                                +..+|+||+|+++++.++++||++++++.||.+.|+..|+|..| ...++.+|++|-|.|+|++|.+++|
T Consensus       131 ----------t~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq  199 (360)
T KOG0023|consen  131 ----------TITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQ  199 (360)
T ss_pred             ----------CCccCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHH
Confidence                      55567899999999999999999999999999999999999975 6678889999999999779999999


Q ss_pred             HHHHcCCCEEEEEcCCh-hHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCc
Q 020435          158 GARLCGATRIIGVDVIS-EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG  236 (326)
Q Consensus       158 la~~~g~~~V~~~~~~~-~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G  236 (326)
                      +||++|. +|++++++. .+.+.++.||++..++..+  +.+..+.+...+++++|-|.+.  ....+..+..+++.+ |
T Consensus       200 ~AKAMG~-rV~vis~~~~kkeea~~~LGAd~fv~~~~--d~d~~~~~~~~~dg~~~~v~~~--a~~~~~~~~~~lk~~-G  273 (360)
T KOG0023|consen  200 YAKAMGM-RVTVISTSSKKKEEAIKSLGADVFVDSTE--DPDIMKAIMKTTDGGIDTVSNL--AEHALEPLLGLLKVN-G  273 (360)
T ss_pred             HHHHhCc-EEEEEeCCchhHHHHHHhcCcceeEEecC--CHHHHHHHHHhhcCcceeeeec--cccchHHHHHHhhcC-C
Confidence            9999999 999999988 5566678899999988773  3889999999888888888776  444588999999999 9


Q ss_pred             EEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc
Q 020435          237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  316 (326)
Q Consensus       237 ~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~  316 (326)
                      ++|++|...  .+..++.+.+..+.+.+.||.+|+   +.+.++++++..++.++..  + +..+++++++||++|.+++
T Consensus       274 t~V~vg~p~--~~~~~~~~~lil~~~~I~GS~vG~---~ket~E~Ldf~a~~~ik~~--I-E~v~~~~v~~a~erm~kgd  345 (360)
T KOG0023|consen  274 TLVLVGLPE--KPLKLDTFPLILGRKSIKGSIVGS---RKETQEALDFVARGLIKSP--I-ELVKLSEVNEAYERMEKGD  345 (360)
T ss_pred             EEEEEeCcC--CcccccchhhhcccEEEEeecccc---HHHHHHHHHHHHcCCCcCc--e-EEEehhHHHHHHHHHHhcC
Confidence            999999853  378888888888899999999988   5789999999999977654  6 8899999999999999998


Q ss_pred             ee-EEEEEeC
Q 020435          317 CL-RCVIWMG  325 (326)
Q Consensus       317 ~~-k~vv~~~  325 (326)
                      -. |.||.+.
T Consensus       346 V~yRfVvD~s  355 (360)
T KOG0023|consen  346 VRYRFVVDVS  355 (360)
T ss_pred             eeEEEEEEcc
Confidence            76 9998864

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=1.3e-45  Score=341.74  Aligned_cols=312  Identities=35%  Similarity=0.613  Sum_probs=258.2

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++++++++||||++.+..+|+.|.+|+.+++++|.........|...+|..++....+.+ 
T Consensus        59 ~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~-  137 (371)
T cd08281          59 RPLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEI-  137 (371)
T ss_pred             CCCCccCCccceeEEEEeCCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCccc-
Confidence            3578999999999999999999999999999998888999999999999999977543211221111100000000000 


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                      .+..+.|+|+||+.++++.++++|+++++++|+++++.++|||+++.+.++++++++|||+|+|++|++++|+||..|+.
T Consensus       138 ~~~~g~G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~  217 (371)
T cd08281         138 NHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGAS  217 (371)
T ss_pred             ccccCcccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            00112359999999999999999999999999999999999999888888999999999999999999999999999985


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      +|+++++++++.+.++++|+++++++.+   .++.+.+++++++++|++|||+|.+..+..++++++++ |+++.+|...
T Consensus       218 ~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~---~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~  293 (371)
T cd08281         218 QVVAVDLNEDKLALARELGATATVNAGD---PNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPD  293 (371)
T ss_pred             cEEEEcCCHHHHHHHHHcCCceEeCCCc---hhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCC
Confidence            6999999999999999999999999877   78888888887779999999999877799999999998 9999999754


Q ss_pred             CCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEE
Q 020435          246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  322 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv  322 (326)
                      +.....++...++.|++++.+++.+....++++.++++++.+|+++++++++++|+++++++||+.+.+++..|.||
T Consensus       294 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi  370 (371)
T cd08281         294 PEARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVI  370 (371)
T ss_pred             CCceeeecHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeee
Confidence            33345677777888999999997665434567899999999999998888999999999999999999988774443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=2.2e-44  Score=333.17  Aligned_cols=319  Identities=46%  Similarity=0.883  Sum_probs=255.6

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      .+|...+|.++|||++|+|+++|+++++|++||+|++.+..+|+.|.+|+.+++++|.........|...+|..++ .-.
T Consensus        50 ~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~-~~~  128 (368)
T cd08300          50 ADPEGLFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRF-SCK  128 (368)
T ss_pred             CCccCCCCceeccceeEEEEEeCCCCccCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCcccc-ccC
Confidence            4455578999999999999999999999999999999889999999999999999997643210122222221110 001


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                      |....++.+.|+|+||+.++++.++++|+++++++++++++++.|||+++.+.++++++++|||+|+|++|++++|+||.
T Consensus       129 g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~  208 (368)
T cd08300         129 GKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKA  208 (368)
T ss_pred             CcccccccccccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence            11122233457999999999999999999999999999999999999988888899999999999999999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +|+.+|+++++++++.+.++++|+++++++.+ .++++.+.+++++++++|+||||+|+...+..+++++++++|+++.+
T Consensus       209 ~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~  287 (368)
T cd08300         209 AGASRIIGIDINPDKFELAKKFGATDCVNPKD-HDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVII  287 (368)
T ss_pred             cCCCeEEEEeCCHHHHHHHHHcCCCEEEcccc-cchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEE
Confidence            99866999999999999999999999998765 11257788888887799999999998766899999997733999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEE
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCV  321 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~v  321 (326)
                      |.........+....+.. ...+.++..+....++++.++++++++|++++.++++++|+++++++|++.+.+++..|++
T Consensus       288 g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~  366 (368)
T cd08300         288 GVAAAGQEISTRPFQLVT-GRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTV  366 (368)
T ss_pred             ccCCCCCccccCHHHHhh-cCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceee
Confidence            975322233344444433 4566676655444456789999999999998888899999999999999999888777988


Q ss_pred             EE
Q 020435          322 IW  323 (326)
Q Consensus       322 v~  323 (326)
                      ++
T Consensus       367 ~~  368 (368)
T cd08300         367 VK  368 (368)
T ss_pred             eC
Confidence            74

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1.7e-44  Score=333.77  Aligned_cols=319  Identities=46%  Similarity=0.844  Sum_probs=254.4

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      ++|...+|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.+++++|........+|+..+|.-++. ..
T Consensus        49 ~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~  127 (368)
T TIGR02818        49 ADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFS-KD  127 (368)
T ss_pred             CCCCCCCCeeeccccEEEEEEECCCCccCCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccc-cC
Confidence            34445679999999999999999999999999999998889999999999999999976442211233222200000 00


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                      |-...++.+.|+|+||+.++++.++++|+++++++++++++++.|||+++.+.++++++++|||+|+|++|++++|+||+
T Consensus       128 g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~  207 (368)
T TIGR02818       128 GQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARM  207 (368)
T ss_pred             CCcccccccCccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence            00001122346999999999999999999999999999999999999988788899999999999999999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhc-CCcEEEE
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK-GWGKTIV  240 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~-~~G~~v~  240 (326)
                      +|+.+|+++++++++++.++++|++++++..+ ...++.+.+++++++++|++|||+|.+..+..+++++++ + |+++.
T Consensus       208 ~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~  285 (368)
T TIGR02818       208 AKASRIIAIDINPAKFELAKKLGATDCVNPND-YDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGW-GESII  285 (368)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHhCCCeEEcccc-cchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCC-CeEEE
Confidence            99867999999999999999999999998653 113566778888777999999999987778999999977 5 99999


Q ss_pred             eccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEE
Q 020435          241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRC  320 (326)
Q Consensus       241 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~  320 (326)
                      +|.........+....++. +..+.++..+....+.++.++++++++|+++++++++++|+++++++|++.+.+++..|+
T Consensus       286 ~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~  364 (368)
T TIGR02818       286 IGVAGAGQEISTRPFQLVT-GRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRT  364 (368)
T ss_pred             EeccCCCCcccccHHHHhc-cceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeE
Confidence            9975333334444444443 445677654433334578999999999999888889999999999999999988777799


Q ss_pred             EEEe
Q 020435          321 VIWM  324 (326)
Q Consensus       321 vv~~  324 (326)
                      +|++
T Consensus       365 ~v~~  368 (368)
T TIGR02818       365 VIHY  368 (368)
T ss_pred             EeeC
Confidence            9875

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=1.7e-44  Score=332.67  Aligned_cols=304  Identities=35%  Similarity=0.592  Sum_probs=255.8

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCC-CCCCCCCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI-SPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~g~~~~~~~~~~~   84 (326)
                      ..+|+++|||++|+|+++|+++++|++||||++.+...|+.|.+|+.+++++|....... ..++ .+|         ..
T Consensus        52 ~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~-~~g---------~~  121 (358)
T TIGR03451        52 DEFPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTL-TDG---------TE  121 (358)
T ss_pred             ccCCcccccceEEEEEEeCCCCcccCCCCEEEEccCCCCCCChHHhCcCcccCcCcccccccccc-ccC---------cc
Confidence            357999999999999999999999999999999999999999999999999997432100 0000 001         00


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  164 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~  164 (326)
                      ...-.+.|+|+||+.+++..++++|+++++++|+++++.+.|||+++.+.++++++++|||+|+|++|++++|+||+.|+
T Consensus       122 ~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~  201 (358)
T TIGR03451       122 LSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGA  201 (358)
T ss_pred             cccccccccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            00001235999999999999999999999999999999999999888788889999999999999999999999999998


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+|+++++++++.+.++++|+++++++.+   .++.+.+++.+++ ++|++|||+|++..+..++++++++ |+++.+|.
T Consensus       202 ~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~---~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~  277 (358)
T TIGR03451       202 SKIIAVDIDDRKLEWAREFGATHTVNSSG---TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGV  277 (358)
T ss_pred             CeEEEEcCCHHHHHHHHHcCCceEEcCCC---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECC
Confidence            55999999999999999999999999877   7788889998887 9999999999876689999999998 99999997


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEE
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  323 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~  323 (326)
                      .......+++...++.+++++.+++.+.....++++++++++++|++++.++++++|+++++++|++.+++++..|+++.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~  357 (358)
T TIGR03451       278 PTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVE  357 (358)
T ss_pred             CCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEe
Confidence            54333456676677788999998865433335678899999999999888889999999999999999998887788775

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=2.7e-44  Score=333.85  Aligned_cols=314  Identities=51%  Similarity=0.918  Sum_probs=254.0

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC----CCCCcccccc-
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP----RDQTSRFKDL-   80 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~g~~~~~~~-   80 (326)
                      ..+|.++|||++|+|+++|+++++|++||||++.+...|+.|.+|+.+++++|.....   .++.    ..|..+++.. 
T Consensus        63 ~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~---~~~~~~~~~~g~~~~~~~~  139 (381)
T PLN02740         63 RAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRV---DPFKSVMVNDGKTRFSTKG  139 (381)
T ss_pred             CCCCccccccceEEEEEeCCCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccc---cccccccccCCCccccccc
Confidence            3579999999999999999999999999999999999999999999999999987553   1110    0110000000 


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                      .+.-..++...|+|+||++++++.++++|+++++++++++++++.|||+++++.+++++|++|||+|+|++|++++|+||
T Consensus       140 ~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak  219 (381)
T PLN02740        140 DGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGAR  219 (381)
T ss_pred             CCCcccccccCccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHH
Confidence            00000112234699999999999999999999999999999999999998888899999999999999999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  240 (326)
                      ..|+.+|+++++++++.+.++++|++++++..+ ...++.+.+++++++++|++|||+|.+..+..++.++++++|+++.
T Consensus       220 ~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~  298 (381)
T PLN02740        220 ARGASKIIGVDINPEKFEKGKEMGITDFINPKD-SDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVL  298 (381)
T ss_pred             HCCCCcEEEEcCChHHHHHHHHcCCcEEEeccc-ccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEE
Confidence            999856999999999999999999999998765 1124777888887668999999999987789999999882299999


Q ss_pred             eccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEE
Q 020435          241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRC  320 (326)
Q Consensus       241 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~  320 (326)
                      +|.......+.+....++ +++++.|++.+......++.++++++.+++++++++++++|+++++++|++.+.+++..|+
T Consensus       299 ~G~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~  377 (381)
T PLN02740        299 LGIHPTPKMLPLHPMELF-DGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRC  377 (381)
T ss_pred             EccCCCCceecccHHHHh-cCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeE
Confidence            997543223344444333 5889999876654434578999999999999888889999999999999999998887899


Q ss_pred             EEEe
Q 020435          321 VIWM  324 (326)
Q Consensus       321 vv~~  324 (326)
                      +|++
T Consensus       378 ~~~~  381 (381)
T PLN02740        378 LLHL  381 (381)
T ss_pred             EEeC
Confidence            9863

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=3.4e-44  Score=328.44  Aligned_cols=285  Identities=28%  Similarity=0.441  Sum_probs=249.7

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|++|+++++||+|++.+..+|+.|.+|+.+++++|.....  .+|...+|             
T Consensus        53 ~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------  117 (339)
T cd08239          53 YQGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------  117 (339)
T ss_pred             CCCceeccCceEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------
Confidence            368999999999999999999999999999999999999999999999999987653  24444455             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  166 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~  166 (326)
                            +|+||+.++++.++++|+++++++|++++++++|||+++ +.+++++|++|||+|+|++|++++|+|+++|+++
T Consensus       118 ------~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~  190 (339)
T cd08239         118 ------GHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAED  190 (339)
T ss_pred             ------cceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence                  999999999999999999999999999999999999976 5678899999999999999999999999999944


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+++++++++.+.++++|+++++++.+   .+ .+.+.+.+++ ++|++|||.|+...+..++++++++ |+++.+|...
T Consensus       191 vi~~~~~~~~~~~~~~~ga~~~i~~~~---~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~  265 (339)
T cd08239         191 VIGVDPSPERLELAKALGADFVINSGQ---DD-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGG  265 (339)
T ss_pred             EEEECCCHHHHHHHHHhCCCEEEcCCc---ch-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCC
Confidence            999999999999999999999999876   55 6778888877 9999999999988678899999998 9999999743


Q ss_pred             CCCccccc-HHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          246 PGSQLSLS-SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       246 ~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                      . .  .+. ...++.+++++.+++..+   .++++++++++.+|.+++.++++++|+++++++|++.+.++..+|+++.|
T Consensus       266 ~-~--~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~  339 (339)
T cd08239         266 E-L--TIEVSNDLIRKQRTLIGSWYFS---VPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF  339 (339)
T ss_pred             C-c--ccCcHHHHHhCCCEEEEEecCC---HHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence            2 2  233 235667899999987543   36799999999999998888899999999999999999887766999875

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=7.3e-44  Score=329.86  Aligned_cols=316  Identities=53%  Similarity=0.957  Sum_probs=257.6

Q ss_pred             CCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC-CCccccccC
Q 020435            3 DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QTSRFKDLR   81 (326)
Q Consensus         3 ~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-g~~~~~~~~   81 (326)
                      .+...+|.++|||++|+|+++|+++++|++||||++.+..+|+.|.+|+.++++.|.........|.... +..++ ...
T Consensus        51 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~-~~~  129 (369)
T cd08301          51 GQTPLFPRILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRF-SIN  129 (369)
T ss_pred             CCCCCCCcccccccceEEEEeCCCCCccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCcccc-ccC
Confidence            3445679999999999999999999999999999999999999999999999999987542111121110 00011 011


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                      |...+++...|+|+||+.+++..++++|+++++++++++++.+.|||+++++..++++|++|||+|+|++|++++|+|+.
T Consensus       130 g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~  209 (369)
T cd08301         130 GKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARI  209 (369)
T ss_pred             CcceeeeeccccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence            22222333446999999999999999999999999999999999999988888899999999999999999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhc-CCcEEEE
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK-GWGKTIV  240 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~-~~G~~v~  240 (326)
                      +|+.+|+++++++++.+.++++|++.+++..+ ...++.+.+++++++++|++|||+|....+..+++++++ + |+++.
T Consensus       210 ~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~-g~~v~  287 (369)
T cd08301         210 RGASRIIGVDLNPSKFEQAKKFGVTEFVNPKD-HDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGW-GVTVL  287 (369)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHcCCceEEcccc-cchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCC-CEEEE
Confidence            99867999999999999999999999988754 113466777777766999999999988778899999999 5 89999


Q ss_pred             eccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEE
Q 020435          241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRC  320 (326)
Q Consensus       241 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~  320 (326)
                      +|........++....++ +++++.+++.+....+.+++++++++.+++++++++++++|+++++++|++.+.+++..|+
T Consensus       288 ~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~  366 (369)
T cd08301         288 LGVPHKDAVFSTHPMNLL-NGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRC  366 (369)
T ss_pred             ECcCCCCcccccCHHHHh-cCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeE
Confidence            997643334455544444 5899999876655445678999999999999888888899999999999999999988888


Q ss_pred             EE
Q 020435          321 VI  322 (326)
Q Consensus       321 vv  322 (326)
                      ++
T Consensus       367 ~~  368 (369)
T cd08301         367 IL  368 (369)
T ss_pred             Ee
Confidence            87

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=3.3e-43  Score=321.56  Aligned_cols=294  Identities=29%  Similarity=0.395  Sum_probs=244.1

Q ss_pred             CCCCCCCc-ccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCC--CCCCCccccc
Q 020435            3 DFPAVFPR-ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM--PRDQTSRFKD   79 (326)
Q Consensus         3 ~~~~~~p~-i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~g~~~~~~   79 (326)
                      .|....|. ++|||++|+|+++| .++.+++||||++.+..+|+.|.+|+.+++++|.+..+.+...+  ..+|      
T Consensus        49 ~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G------  121 (350)
T COG1063          49 EPFVPPGDIILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG------  121 (350)
T ss_pred             CCCCCCCCcccCccceEEEEEec-cccCCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC------
Confidence            44455565 99999999999999 77889999999999999999999999999999996554211111  1345      


Q ss_pred             cCCcccccccccccccceEEecccceEE-cCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHH
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVK-VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEG  158 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~-ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~l  158 (326)
                                   +|+||+++|.+++++ +||++ +.+++++..+++|++++........++++|+|+|+|++|++++++
T Consensus       122 -------------~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~  187 (350)
T COG1063         122 -------------GFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIAL  187 (350)
T ss_pred             -------------ceEEEEEeccccCeecCCCCC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHH
Confidence                         999999999766555 58888 566666666999998863445555566699999999999999999


Q ss_pred             HHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCc
Q 020435          159 ARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWG  236 (326)
Q Consensus       159 a~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G  236 (326)
                      ++..|+.+|++++.++++++++++ .+++.+++..+   ++..+.+.+.+++ ++|++|||+|.+.++.+++++++++ |
T Consensus       188 a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~---~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~g-G  263 (350)
T COG1063         188 AKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE---DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-G  263 (350)
T ss_pred             HHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc---ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCC-C
Confidence            999999899999999999999998 66777776655   4677788899988 9999999999999899999999998 9


Q ss_pred             EEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc
Q 020435          237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  316 (326)
Q Consensus       237 ~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~  316 (326)
                      +++.+|....... .++...++.|++++.|++..  ..+.+++.+++++++|++++..++++.++++++++||+.+.+.+
T Consensus       264 ~v~~vGv~~~~~~-~~~~~~~~~kel~l~gs~~~--~~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~  340 (350)
T COG1063         264 TVVVVGVYGGEDI-PLPAGLVVSKELTLRGSLRP--SGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRK  340 (350)
T ss_pred             EEEEEeccCCccC-ccCHHHHHhcccEEEeccCC--CCcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcC
Confidence            9999998654332 66777888899999998431  22468999999999999999999999999999999999998855


Q ss_pred             e--eEEEEEe
Q 020435          317 C--LRCVIWM  324 (326)
Q Consensus       317 ~--~k~vv~~  324 (326)
                      .  .|+++.+
T Consensus       341 ~~~~Kv~i~~  350 (350)
T COG1063         341 EEAIKVVLKP  350 (350)
T ss_pred             CCeEEEEecC
Confidence            3  4998864

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=2.6e-43  Score=323.09  Aligned_cols=281  Identities=20%  Similarity=0.325  Sum_probs=238.6

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCC-----CCCCCcccccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-----PRDQTSRFKDL   80 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~g~~~~~~~   80 (326)
                      ..+|.++|||++|+|+++  ++++|++||||++.+..+|+.|.+|+.+++++|.....   +|.     ..+|       
T Consensus        57 ~~~p~v~GhE~~G~V~~v--~v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~~~~~~G-------  124 (343)
T PRK09880         57 IKAPMVLGHEVIGKIVHS--DSSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMYFPHVDG-------  124 (343)
T ss_pred             ccCCcccCcccEEEEEEe--cCccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccccCCCCC-------
Confidence            467999999999999999  78899999999999999999999999999999987654   332     1234       


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                                  +|+||++++++.++++|+++++++++. ..+++|||+++. .....++++|||+|+|++|++++|+|+
T Consensus       125 ------------~~aey~~v~~~~~~~~P~~l~~~~aa~-~~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak  190 (343)
T PRK09880        125 ------------GFTRYKVVDTAQCIPYPEKADEKVMAF-AEPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVK  190 (343)
T ss_pred             ------------ceeeeEEechHHeEECCCCCCHHHHHh-hcHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHH
Confidence                        999999999999999999999877664 447889999764 455668999999999999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  240 (326)
                      ++|+.+|+++++++++++.++++|+++++++.+   +++.+ +.+. .+++|+||||+|.+..+..++++++++ |+++.
T Consensus       191 ~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~-~~~~-~g~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~  264 (343)
T PRK09880        191 TLGAAEIVCADVSPRSLSLAREMGADKLVNPQN---DDLDH-YKAE-KGYFDVSFEVSGHPSSINTCLEVTRAK-GVMVQ  264 (343)
T ss_pred             HcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCc---ccHHH-Hhcc-CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEE
Confidence            999867999999999999999999999999876   55543 2222 237999999999977689999999998 99999


Q ss_pred             eccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce-eE
Q 020435          241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LR  319 (326)
Q Consensus       241 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~-~k  319 (326)
                      +|...  ...+++...++.|++++.++...    .++++++++++++|++++.++++++|+++++++|++.+.+++. +|
T Consensus       265 ~G~~~--~~~~~~~~~~~~k~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gK  338 (343)
T PRK09880        265 VGMGG--APPEFPMMTLIVKEISLKGSFRF----TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAK  338 (343)
T ss_pred             EccCC--CCCccCHHHHHhCCcEEEEEeec----cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceE
Confidence            99743  33566777778889999988532    4679999999999999888889999999999999999988765 59


Q ss_pred             EEEEe
Q 020435          320 CVIWM  324 (326)
Q Consensus       320 ~vv~~  324 (326)
                      +++.+
T Consensus       339 vvl~~  343 (343)
T PRK09880        339 VQLVF  343 (343)
T ss_pred             EEEeC
Confidence            99874

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.8e-42  Score=320.97  Aligned_cols=314  Identities=50%  Similarity=0.931  Sum_probs=251.1

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCCccccccCCccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETI   85 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~g~~~~~~~~~~~~   85 (326)
                      .+|.++|||++|+|+++|++|++|++||+|++.+...|+.|.+|+.++++.|...... ..|... ++..++. ..|...
T Consensus        62 ~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~-~~g~~~  139 (378)
T PLN02827         62 LFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFS-IKGKPV  139 (378)
T ss_pred             CCCeeecccceEEEEEcCCCCcccCCCCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCccccc-ccCccc
Confidence            4689999999999999999999999999999998899999999999999999764310 001000 0000000 000000


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                      .++...|+|+||+.+++..++++|+++++++++.+++.+.++|+++++.+++++|++|||+|+|++|++++|+|++.|+.
T Consensus       140 ~~~~~~G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~  219 (378)
T PLN02827        140 YHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGAS  219 (378)
T ss_pred             ccccccccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            01112469999999999999999999999999999988899998877778899999999999999999999999999985


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      .|+++++++++.+.++++|+++++++.+ ..+++.+.+++++++++|++|||+|....+..+++.++++.|+++.+|...
T Consensus       220 ~vi~~~~~~~~~~~a~~lGa~~~i~~~~-~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~  298 (378)
T PLN02827        220 QIIGVDINPEKAEKAKTFGVTDFINPND-LSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPK  298 (378)
T ss_pred             eEEEECCCHHHHHHHHHcCCcEEEcccc-cchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcC
Confidence            6888888999999999999999998764 113577778888766999999999987668899999998228999999753


Q ss_pred             CCCcccccH-HHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          246 PGSQLSLSS-FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       246 ~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                      ..  ..+.. ..++.+++++.|+..+......+++++++++++|++++.++++++|+++++++|++.+.+++.+|+||.+
T Consensus       299 ~~--~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~  376 (378)
T PLN02827        299 AK--PEVSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHM  376 (378)
T ss_pred             CC--ccccccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEe
Confidence            22  23333 3466789999998765443345789999999999998877899999999999999999998878999987


Q ss_pred             C
Q 020435          325 G  325 (326)
Q Consensus       325 ~  325 (326)
                      .
T Consensus       377 ~  377 (378)
T PLN02827        377 P  377 (378)
T ss_pred             c
Confidence            4

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=7.1e-42  Score=316.06  Aligned_cols=312  Identities=50%  Similarity=0.919  Sum_probs=253.5

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++++++++||+|++.+...|+.|.+|+.++++.|...... ..|...++..++.. .|.-.
T Consensus        53 ~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~~-~~~~~  130 (365)
T cd08277          53 TLFPVILGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFTC-KGKKI  130 (365)
T ss_pred             CCCCeecccceeEEEEeeCCCCccCCCCCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCcccccc-CCccc
Confidence            46789999999999999999999999999999988999999999999999999875431 12222221000000 00000


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                      +++.+.|+|+||+.++++.++++|+++++++++++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+++|+.
T Consensus       131 ~~~~~~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~  210 (365)
T cd08277         131 YHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGAS  210 (365)
T ss_pred             ccccccccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            11112469999999999999999999999999999999999999887888999999999999999999999999999986


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhc-CCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK-GWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~-~~G~~v~~g~~  244 (326)
                      +|+++++++++.+.++++|++++++..+ ...++.+.+++++++++|++|||+|....+..+++++++ + |+++.+|..
T Consensus       211 ~Vi~~~~~~~~~~~~~~~ga~~~i~~~~-~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~  288 (365)
T cd08277         211 RIIGVDINEDKFEKAKEFGATDFINPKD-SDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGW-GVSVVVGVP  288 (365)
T ss_pred             eEEEEeCCHHHHHHHHHcCCCcEecccc-ccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCC-CEEEEEcCC
Confidence            7999999999999999999999998765 112356677777767999999999987768899999977 5 999999875


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEE
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  323 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~  323 (326)
                      . ....+++...++. ++++.+++.+.+..+.++.+++++++++.++++++++++|+++++++|++.+.+++..|++++
T Consensus       289 ~-~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~  365 (365)
T cd08277         289 P-GAELSIRPFQLIL-GRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT  365 (365)
T ss_pred             C-ccccccCHhHHhh-CCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence            3 2234555555554 889998877665444578999999999998888889999999999999999998886788873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=1.7e-42  Score=308.91  Aligned_cols=270  Identities=20%  Similarity=0.335  Sum_probs=226.1

Q ss_pred             ccCCceeEEEEEecCCCC------CccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435           11 ILGHEAIGVVESVGENVD------GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus        11 i~G~e~~G~V~~~G~~v~------~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      |+|||++|+|+++|++|+      ++++||||++.+..+|+.|.+|+.++++.|.....   +|+...+           
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-----------   66 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALD-----------   66 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCccccc-----------
Confidence            689999999999999999      89999999999999999999999999999987654   3332100           


Q ss_pred             cccccccccccceEEeccc-ceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC
Q 020435           85 IHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG  163 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~-~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g  163 (326)
                       .++...|+|+||+++++. .++++|+++++++++.+++.+.|||+++ +.....++++|||+|+|++|++++|+||+.|
T Consensus        67 -~~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G  144 (280)
T TIGR03366        67 -SGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG  144 (280)
T ss_pred             -CCccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence             000012499999999997 7999999999999999998999999975 4455669999999999999999999999999


Q ss_pred             CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          164 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       164 ~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +.+|+++++++++.+.++++|++++++..+     ..+.+++.+.+ ++|++|||+|.+..++.++++++++ |+++.+|
T Consensus       145 ~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-----~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G  218 (280)
T TIGR03366       145 AARVVAADPSPDRRELALSFGATALAEPEV-----LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAG  218 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHcCCcEecCchh-----hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEec
Confidence            955999999999999999999999987644     24566777777 9999999999888789999999998 9999999


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCC--CCCCCcceeeeeccccH
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK--ELELDKFVTHEMKFEEI  305 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~i~~~~~l~~i  305 (326)
                      ...+....+++...++.|++++.++....   .++++++++++.++  +++++++++++|+++++
T Consensus       219 ~~~~~~~~~i~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       219 SVFPGGPVALDPEQVVRRWLTIRGVHNYE---PRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             cCCCCCceeeCHHHHHhCCcEEEecCCCC---HHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            75433445777788888999999986332   46799999999984  67777889999999874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=8.8e-42  Score=313.46  Aligned_cols=289  Identities=24%  Similarity=0.366  Sum_probs=244.3

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|+++++|++||+|++.+...|+.|.+|+.++++.|.....   .|...+|             
T Consensus        52 ~~p~i~G~e~~G~V~~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------  115 (347)
T PRK10309         52 YYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRDG-------------  115 (347)
T ss_pred             CCCcccccceEEEEEEeCCCCCCCCCCCEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCCC-------------
Confidence            368999999999999999999999999999999999999999999999999976443   4444455             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  166 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~  166 (326)
                            +|+||+.++++.++++|+++++++|+++. +++++|++ ++...++++++|||+|+|++|++++|+|+++|+..
T Consensus       116 ------~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~  187 (347)
T PRK10309        116 ------GNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKS  187 (347)
T ss_pred             ------ccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence                  99999999999999999999999998875 56678886 46678889999999999999999999999999945


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-Ccc-EEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GAD-YCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d-~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      |+++++++++.+.++++|++++++.++   .+ .+.+.+.+.+ ++| ++|||+|....+..++++++++ |+++.+|..
T Consensus       188 v~~~~~~~~~~~~~~~~Ga~~~i~~~~---~~-~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~  262 (347)
T PRK10309        188 VTAIDINSEKLALAKSLGAMQTFNSRE---MS-APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTL  262 (347)
T ss_pred             EEEECCCHHHHHHHHHcCCceEecCcc---cC-HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccC
Confidence            889999999999999999999998776   44 5567777776 898 9999999987789999999998 999999975


Q ss_pred             CCCCccc-ccHHHHHhcCCEEEeeeccCCC--CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EE
Q 020435          245 QPGSQLS-LSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RC  320 (326)
Q Consensus       245 ~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~  320 (326)
                      ....... ..+..++.+++++.+++.+...  .+++++++++++++|++++++++++.|+++++++|++.+.+++.. |+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKv  342 (347)
T PRK10309        263 HHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKV  342 (347)
T ss_pred             CCCcccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEE
Confidence            4321111 1223566789999998754221  136789999999999998888899999999999999999888764 99


Q ss_pred             EEEe
Q 020435          321 VIWM  324 (326)
Q Consensus       321 vv~~  324 (326)
                      ++++
T Consensus       343 vv~~  346 (347)
T PRK10309        343 LLQI  346 (347)
T ss_pred             EEeC
Confidence            9875

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=8.2e-42  Score=314.74  Aligned_cols=286  Identities=24%  Similarity=0.366  Sum_probs=235.1

Q ss_pred             CCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCC----CCCCCCCCCccc
Q 020435            3 DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKI----SPWMPRDQTSRF   77 (326)
Q Consensus         3 ~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~g~~~~   77 (326)
                      ++...+|.++|||++|+|+++|++|++|++||+|++.+. ..|+.|.+|+.+++++|.......    ..|...+|    
T Consensus        61 ~~~~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G----  136 (360)
T PLN02586         61 WGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYG----  136 (360)
T ss_pred             cCCCCCCccCCcceeEEEEEECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCC----
Confidence            343467999999999999999999999999999986554 479999999999999998654310    00222234    


Q ss_pred             cccCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHH
Q 020435           78 KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAE  157 (326)
Q Consensus        78 ~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~  157 (326)
                                     +|+||++++++.++++|+++++++|+++++.+.|||+++.+...+++|++|||.|+|++|++++|
T Consensus       137 ---------------~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq  201 (360)
T PLN02586        137 ---------------GYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVK  201 (360)
T ss_pred             ---------------ccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHH
Confidence                           99999999999999999999999999999999999998766667789999999999999999999


Q ss_pred             HHHHcCCCEEEEEcCChhHH-HHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCc
Q 020435          158 GARLCGATRIIGVDVISEKF-EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG  236 (326)
Q Consensus       158 la~~~g~~~V~~~~~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G  236 (326)
                      +||.+|+ +|++++.++++. +.++++|++++++..+   .   +.+++.++ ++|++||++|.+..+..++++++++ |
T Consensus       202 ~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~---~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G  272 (360)
T PLN02586        202 IGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVSTD---P---EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVN-G  272 (360)
T ss_pred             HHHHCCC-EEEEEeCCcchhhhHHHhCCCcEEEcCCC---H---HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCC-c
Confidence            9999999 888887776654 4567899999998655   2   34555544 7999999999876689999999998 9


Q ss_pred             EEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc
Q 020435          237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  316 (326)
Q Consensus       237 ~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~  316 (326)
                      +++.+|...  ....++...++.++..+.++..+.   .++++++++++++|++++.  + ++|+++++++||+.+.+++
T Consensus       273 ~iv~vG~~~--~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~li~~g~i~~~--~-~~~~l~~~~~A~~~~~~~~  344 (360)
T PLN02586        273 KLITLGLPE--KPLELPIFPLVLGRKLVGGSDIGG---IKETQEMLDFCAKHNITAD--I-ELIRMDEINTAMERLAKSD  344 (360)
T ss_pred             EEEEeCCCC--CCCccCHHHHHhCCeEEEEcCcCC---HHHHHHHHHHHHhCCCCCc--E-EEEeHHHHHHHHHHHHcCC
Confidence            999998653  235566666677788888876443   3579999999999988753  4 6899999999999999887


Q ss_pred             ee-EEEEEe
Q 020435          317 CL-RCVIWM  324 (326)
Q Consensus       317 ~~-k~vv~~  324 (326)
                      .. |+++.+
T Consensus       345 ~~gkvvi~~  353 (360)
T PLN02586        345 VRYRFVIDV  353 (360)
T ss_pred             CcEEEEEEc
Confidence            64 999875

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=1.4e-41  Score=312.28  Aligned_cols=287  Identities=24%  Similarity=0.384  Sum_probs=246.8

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++++.+ +||+|++.+..+|++|.+|+.+++++|.....   .|...+|            
T Consensus        51 ~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~G------------  114 (349)
T TIGR03201        51 HALPLALGHEISGRVIQAGAGAASW-IGKAVIVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQG------------  114 (349)
T ss_pred             CCCCeeccccceEEEEEeCCCcCCC-CCCEEEECCCCCCCCChhhhCcCcccCCCCCc---cCcCCCC------------
Confidence            4578999999999999999999887 99999999999999999999999999976553   4444445            


Q ss_pred             ccccccccccceEEecccceEEcCC------CCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDP------TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~------~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la  159 (326)
                             +|+||+.++++.++++|+      ++++++++++.+++.|||+++. ..+++++++|+|+|+|++|++++|+|
T Consensus       115 -------~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a  186 (349)
T TIGR03201       115 -------GFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTA  186 (349)
T ss_pred             -------cccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHH
Confidence                   999999999999999999      8999999999999999999764 57889999999999999999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-Ccc----EEEEcCCcHHHHHHHHHHhhcC
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GAD----YCFECVGLASLVQEAYACCRKG  234 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d----~v~d~~g~~~~~~~~~~~l~~~  234 (326)
                      ++.|+ +|+++++++++.+.++++|+++++++.+...+++.+.+++++++ ++|    +||||+|+...++.++++++++
T Consensus       187 ~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~  265 (349)
T TIGR03201       187 KAMGA-AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG  265 (349)
T ss_pred             HHcCC-eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcC
Confidence            99999 89999999999999999999999987651113577778888887 886    8999999988788899999998


Q ss_pred             CcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHc
Q 020435          235 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK  314 (326)
Q Consensus       235 ~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~  314 (326)
                       |+++.+|....  ...++...++.+++++.+++...   .++++++++++++|++++.+++ +.|+++++++||+.+.+
T Consensus       266 -G~iv~~G~~~~--~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~i~~g~i~~~~~i-~~~~l~~~~~A~~~~~~  338 (349)
T TIGR03201       266 -GTLVVVGYTMA--KTEYRLSNLMAFHARALGNWGCP---PDRYPAALDLVLDGKIQLGPFV-ERRPLDQIEHVFAAAHH  338 (349)
T ss_pred             -CeEEEECcCCC--CcccCHHHHhhcccEEEEEecCC---HHHHHHHHHHHHcCCCCcccce-EEecHHHHHHHHHHHHc
Confidence             99999997532  24556666777788888886432   4679999999999999877777 47999999999999998


Q ss_pred             Ccee-EEEEEe
Q 020435          315 GKCL-RCVIWM  324 (326)
Q Consensus       315 ~~~~-k~vv~~  324 (326)
                      ++.. |+++++
T Consensus       339 ~~~~~k~~~~~  349 (349)
T TIGR03201       339 HKLKRRAILTP  349 (349)
T ss_pred             CCccceEEecC
Confidence            8766 888753

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.4e-41  Score=312.82  Aligned_cols=285  Identities=25%  Similarity=0.389  Sum_probs=235.7

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCC-CCCCCccccCCCCCCCCCCCCCCC----CCCCCCCCcccc
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKIS----PWMPRDQTSRFK   78 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~g~~~~~   78 (326)
                      +...+|.++|||++|+|+++|+++++|++||||++.+.. .|+.|.+|+.+++++|........    .|...+      
T Consensus        56 ~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~------  129 (375)
T PLN02178         56 GFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQ------  129 (375)
T ss_pred             CCCCCCcccCceeeEEEEEECCCCCccCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCC------
Confidence            334579999999999999999999999999999876665 699999999999999987653100    121223      


Q ss_pred             ccCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcc-cCCCCEEEEEccCHHHHHHHH
Q 020435           79 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAE  157 (326)
Q Consensus        79 ~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~-~~~~~~vlI~Gag~~G~~a~~  157 (326)
                                   |+|+||+.++++.++++|+++|+++++++++...|||+++..... .+++++|+|.|+|++|++++|
T Consensus       130 -------------G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq  196 (375)
T PLN02178        130 -------------GGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVK  196 (375)
T ss_pred             -------------CccccEEEEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHH
Confidence                         499999999999999999999999999999999999997654433 368999999999999999999


Q ss_pred             HHHHcCCCEEEEEcCChhH-HHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCc
Q 020435          158 GARLCGATRIIGVDVISEK-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG  236 (326)
Q Consensus       158 la~~~g~~~V~~~~~~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G  236 (326)
                      +||.+|+ +|++++.++++ .+.++++|+++++++.+   .   +.+.+.++ ++|++|||+|.+..+..++++++++ |
T Consensus       197 ~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~---~---~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~-G  267 (375)
T PLN02178        197 IGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVTTD---S---QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVS-G  267 (375)
T ss_pred             HHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcCcC---H---HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCC-C
Confidence            9999999 89888876554 67788999999998654   2   34555544 7999999999987689999999998 9


Q ss_pred             EEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc
Q 020435          237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  316 (326)
Q Consensus       237 ~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~  316 (326)
                      +++.+|...  ....++...++.+++++.|+..+.   .+++.++++++++|++++.  + +.|+++++++|++.+.+++
T Consensus       268 ~iv~vG~~~--~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~  339 (375)
T PLN02178        268 KLVALGLPE--KPLDLPIFPLVLGRKMVGGSQIGG---MKETQEMLEFCAKHKIVSD--I-ELIKMSDINSAMDRLAKSD  339 (375)
T ss_pred             EEEEEccCC--CCCccCHHHHHhCCeEEEEeCccC---HHHHHHHHHHHHhCCCccc--E-EEEeHHHHHHHHHHHHcCC
Confidence            999998753  335667777778899999986543   3578999999999987654  5 6799999999999999887


Q ss_pred             ee-EEEEEe
Q 020435          317 CL-RCVIWM  324 (326)
Q Consensus       317 ~~-k~vv~~  324 (326)
                      .. |+++.+
T Consensus       340 ~~gkvvi~~  348 (375)
T PLN02178        340 VRYRFVIDV  348 (375)
T ss_pred             CceEEEEEe
Confidence            65 999886

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=2.5e-41  Score=314.21  Aligned_cols=296  Identities=23%  Similarity=0.287  Sum_probs=232.9

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCC---CCCCCCCCCCccccccCCc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK---ISPWMPRDQTSRFKDLRGE   83 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~g~~~~~~~~~~   83 (326)
                      .+|.++|||++|+|+++|++|++|++||||++.+...|+.|.+|+.+++++|......   ..+|+...|          
T Consensus        60 ~~p~i~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~----------  129 (393)
T TIGR02819        60 PTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG----------  129 (393)
T ss_pred             CCCccccceeEEEEEEEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC----------
Confidence            5799999999999999999999999999999999999999999999999999864310   001211000          


Q ss_pred             ccccccccccccceEEeccc--ceEEcCCCCCc----cccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHH
Q 020435           84 TIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPP----NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAE  157 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~--~~~~ip~~~s~----~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~  157 (326)
                           .-.|+|+||+.+++.  .++++|++++.    ++++++.+++.|||+++ +..+++++++|||.|+|++|++++|
T Consensus       130 -----~~~G~~aey~~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiq  203 (393)
T TIGR02819       130 -----GWVGGQSEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAA  203 (393)
T ss_pred             -----CCCCceEEEEEechhhCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHH
Confidence                 002499999999964  79999998754    35677778999999975 4578999999999888999999999


Q ss_pred             HHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcH--------------H
Q 020435          158 GARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA--------------S  222 (326)
Q Consensus       158 la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~--------------~  222 (326)
                      +|+++|+..|++++++++++++++++|++.+....+   .++.+.+.+++++ ++|++|||+|.+              .
T Consensus       204 lAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~---~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~  280 (393)
T TIGR02819       204 SAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKD---ATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPAT  280 (393)
T ss_pred             HHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCc---ccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHH
Confidence            999999955666677888999999999975443333   4677778888877 999999999986              3


Q ss_pred             HHHHHHHHhhcCCcEEEEeccCCCCC-----------cccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCC
Q 020435          223 LVQEAYACCRKGWGKTIVLGVDQPGS-----------QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  291 (326)
Q Consensus       223 ~~~~~~~~l~~~~G~~v~~g~~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~  291 (326)
                      .+..++++++++ |+++.+|......           ..++.....+.+++++.+..   ....+.+.++++++++|+++
T Consensus       281 ~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~---~~~~~~~~~~~~~~~~g~i~  356 (393)
T TIGR02819       281 VLNSLMEVTRVG-GAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQ---TPVMKYNRNLMQAILHDRVQ  356 (393)
T ss_pred             HHHHHHHHhhCC-CEEEEeeecCCcccccccccccccccccchHHhhccCceEEecc---CChhhhHHHHHHHHHcCCCC
Confidence            699999999998 9999999853211           11233344455666666532   11122346899999999999


Q ss_pred             CCccee-eeeccccHHHHHHHHHcCceeEEEEEeC
Q 020435          292 LDKFVT-HEMKFEEINSAFDLLIKGKCLRCVIWMG  325 (326)
Q Consensus       292 ~~~~i~-~~~~l~~i~~a~~~~~~~~~~k~vv~~~  325 (326)
                      +..+++ ++|+++++++||+.+.++...|++|+++
T Consensus       357 ~~~~i~~~~~~l~~~~~a~~~~~~~~~~Kvvi~~~  391 (393)
T TIGR02819       357 IAKAVNVTVISLDDAPEGYAEFDAGAAKKFVIDPH  391 (393)
T ss_pred             HHHceecceecHHHHHHHHHHHhhCCceEEEEeCC
Confidence            887777 6899999999999999887789999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=1.4e-40  Score=307.02  Aligned_cols=300  Identities=27%  Similarity=0.402  Sum_probs=249.3

Q ss_pred             CCCCcccCCceeEEEEEecCCCCC------ccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDG------VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD   79 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~------~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~   79 (326)
                      ..+|.++|||++|+|+++|+++++      |++||+|++.+..+|++|.+|+.++++.|.....   .|...+.      
T Consensus        52 ~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~------  122 (361)
T cd08231          52 VPLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASC------  122 (361)
T ss_pred             CCCCcccccCCceEEEEeCCCccccccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchh---ccccccc------
Confidence            567899999999999999999986      9999999999999999999999999999987664   3322110      


Q ss_pred             cCCcccccccccccccceEEeccc-ceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHH
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEG  158 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~-~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~l  158 (326)
                        +    .....|+|+||+.++++ +++++|++++.+++++++++++|||+++.+....+++++|||+|+|++|++++++
T Consensus       123 --~----~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~l  196 (361)
T cd08231         123 --D----DPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAA  196 (361)
T ss_pred             --c----CCCCCcccceEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHH
Confidence              0    00012499999999986 7999999999999999988999999988776667799999999989999999999


Q ss_pred             HHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcE
Q 020435          159 ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGK  237 (326)
Q Consensus       159 a~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~  237 (326)
                      |+.+|+++|+++++++++.++++++|++++++..+.....+.+.+++.+++ ++|++|||.|+...+..++++++++ |+
T Consensus       197 ak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~  275 (361)
T cd08231         197 AKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GT  275 (361)
T ss_pred             HHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CE
Confidence            999998679999999999999999999999987651112233578888877 9999999999866688999999998 99


Q ss_pred             EEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCC--CCCCCcceeeeeccccHHHHHHHHHcC
Q 020435          238 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK--ELELDKFVTHEMKFEEINSAFDLLIKG  315 (326)
Q Consensus       238 ~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~i~~~~~l~~i~~a~~~~~~~  315 (326)
                      ++.+|........+++...++.+++++.+++...   .++++++++++.++  .+++.++++++|+++++++|++.+.++
T Consensus       276 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~  352 (361)
T cd08231         276 YVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYD---PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESG  352 (361)
T ss_pred             EEEEcCCCCCCccccCHHHHhhcccEEEEcccCC---chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcC
Confidence            9999875433345566656677899998886433   46799999999988  666777788999999999999999888


Q ss_pred             ceeEEEEEe
Q 020435          316 KCLRCVIWM  324 (326)
Q Consensus       316 ~~~k~vv~~  324 (326)
                      ..+|++|++
T Consensus       353 ~~~k~vi~~  361 (361)
T cd08231         353 TALKVVIDP  361 (361)
T ss_pred             CceEEEeCC
Confidence            767999864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1.2e-40  Score=303.35  Aligned_cols=277  Identities=20%  Similarity=0.236  Sum_probs=234.7

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      .+|...+|.++|||++|+|+++|+++++|++||+|++.+. ..|+.|.+|+.+++++|....+   .|+..+|       
T Consensus        50 ~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------  119 (329)
T TIGR02822        50 DLPVHRPRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------  119 (329)
T ss_pred             CCCCCCCCccCCcceEEEEEEECCCCcccCCCCEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------
Confidence            3444446899999999999999999999999999987665 4699999999999999987664   4554455       


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                                  +|+||+.+++..++++|+++++++++.+++.+.|||+++ ..+++++|++|||+|+|++|++++|+|+
T Consensus       120 ------------~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~  186 (329)
T TIGR02822       120 ------------GYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVAL  186 (329)
T ss_pred             ------------cceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHH
Confidence                        999999999999999999999999999999999999986 4688999999999999999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  240 (326)
                      ..|+ +|+++++++++.++++++|++++++..+   ..         .+++|+++++.+....+..++++++++ |+++.
T Consensus       187 ~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~~---~~---------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~  252 (329)
T TIGR02822       187 AQGA-TVHVMTRGAAARRLALALGAASAGGAYD---TP---------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAV  252 (329)
T ss_pred             HCCC-eEEEEeCChHHHHHHHHhCCceeccccc---cC---------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEE
Confidence            9999 8999999999999999999999987543   11         126899999888777799999999998 99999


Q ss_pred             eccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-E
Q 020435          241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-R  319 (326)
Q Consensus       241 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k  319 (326)
                      +|..... ...++...++.+++++.+++...   ++++.++++++++|+++   +++++|+++++++|++.+.+++.. |
T Consensus       253 ~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~---~i~~~~~l~~~~~A~~~~~~~~~~Gk  325 (329)
T TIGR02822       253 AGIHLTD-TPPLNYQRHLFYERQIRSVTSNT---RADAREFLELAAQHGVR---VTTHTYPLSEADRALRDLKAGRFDGA  325 (329)
T ss_pred             EeccCcc-CCCCCHHHHhhCCcEEEEeecCC---HHHHHHHHHHHHhCCCe---eEEEEEeHHHHHHHHHHHHcCCCceE
Confidence            9974322 23456666677889998876332   45788899999999875   357899999999999999988776 8


Q ss_pred             EEE
Q 020435          320 CVI  322 (326)
Q Consensus       320 ~vv  322 (326)
                      +||
T Consensus       326 vvl  328 (329)
T TIGR02822       326 AVL  328 (329)
T ss_pred             EEe
Confidence            886

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=4.4e-40  Score=304.13  Aligned_cols=312  Identities=41%  Similarity=0.771  Sum_probs=263.4

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++++.+++||+|++.+...|+.|.+|+.+++++|......+.+|...+|...+.- +|.-.
T Consensus        51 ~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~  129 (365)
T cd05279          51 TPLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTC-KGKPI  129 (365)
T ss_pred             CCCCcccccceeEEEEEeCCCcccCCCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeec-cCCcc
Confidence            34678999999999999999999999999999988889999999999999999887754444544444333332 44445


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                      +++.+.|+|++|+.++++.++++|+++++++++++.+++.+||+++.+.++++++++|||+|+|++|++++++|+.+|+.
T Consensus       130 ~~~~~~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~  209 (365)
T cd05279         130 HHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGAS  209 (365)
T ss_pred             ccccccccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            56667789999999999999999999999999999999999999888889999999999998899999999999999985


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCc--cHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhh-cCCcEEEEec
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK--SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR-KGWGKTIVLG  242 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~--~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~-~~~G~~v~~g  242 (326)
                      .|+++++++++.+.++++|++++++..+   .  ++.+.+++++++++|++||++|....+..++++++ ++ |+++.+|
T Consensus       210 ~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g  285 (365)
T cd05279         210 RIIAVDINKDKFEKAKQLGATECINPRD---QDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVG  285 (365)
T ss_pred             eEEEEeCCHHHHHHHHHhCCCeeccccc---ccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEe
Confidence            5888888999999999999999998776   4  67777888775699999999997666889999999 98 9999998


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEE
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  322 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv  322 (326)
                      .........++...+ .++.++.+++.+.....+++..++++++++.+++.++++++|+++++++|++.+.+++..|+++
T Consensus       286 ~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~  364 (365)
T cd05279         286 VPPSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTIL  364 (365)
T ss_pred             cCCCCCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeee
Confidence            753334566776666 5678888887665555678999999999998887667779999999999999998887778876


Q ss_pred             E
Q 020435          323 W  323 (326)
Q Consensus       323 ~  323 (326)
                      +
T Consensus       365 ~  365 (365)
T cd05279         365 T  365 (365)
T ss_pred             C
Confidence            3

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=5.4e-41  Score=303.25  Aligned_cols=267  Identities=25%  Similarity=0.329  Sum_probs=224.8

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCc
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE   83 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~   83 (326)
                      |..++|+|+|.|++|+|+++|++|++|++||||+....                         .+  ..           
T Consensus        53 ~~~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~~-------------------------~~--~~-----------   94 (326)
T COG0604          53 PVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGG-------------------------VG--RD-----------   94 (326)
T ss_pred             CCCCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEccC-------------------------CC--CC-----------
Confidence            44569999999999999999999999999999976420                         00  22           


Q ss_pred             ccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHc
Q 020435           84 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC  162 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~  162 (326)
                              |+|+||+.+|++.++++|+++|+++||++++.+.|||+++.+..++++|++|||+|+ |++|.+++||||++
T Consensus        95 --------G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~  166 (326)
T COG0604          95 --------GGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKAL  166 (326)
T ss_pred             --------CcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHc
Confidence                    499999999999999999999999999999999999999999899999999999985 99999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      |+ .++++.+++++.++++++|+++++++.+   .++.+.+++++++ ++|+|||++|+.. +..++.+|+++ |+++.+
T Consensus       167 G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~---~~~~~~v~~~t~g~gvDvv~D~vG~~~-~~~~l~~l~~~-G~lv~i  240 (326)
T COG0604         167 GA-TVVAVVSSSEKLELLKELGADHVINYRE---EDFVEQVRELTGGKGVDVVLDTVGGDT-FAASLAALAPG-GRLVSI  240 (326)
T ss_pred             CC-cEEEEecCHHHHHHHHhcCCCEEEcCCc---ccHHHHHHHHcCCCCceEEEECCCHHH-HHHHHHHhccC-CEEEEE
Confidence            98 7777777888888999999999999988   8899999999999 9999999999999 88899999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCC---CCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcC-ce
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGL---KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG-KC  317 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~-~~  317 (326)
                      |...+.....++...++.+.+...+......   ...+.+.++.+++.+|.+++.  ++.+||+++..++..+.... +.
T Consensus       241 g~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~--i~~~~~l~e~~~a~a~~~~~~~~  318 (326)
T COG0604         241 GALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPV--IDRVYPLAEAPAAAAHLLLERRT  318 (326)
T ss_pred             ecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCcce--eccEechhhhHHHHHHHHcccCC
Confidence            9865334555666666777888887765432   112357779999999966554  87899999966665544444 44


Q ss_pred             -eEEEEEe
Q 020435          318 -LRCVIWM  324 (326)
Q Consensus       318 -~k~vv~~  324 (326)
                       +|+++++
T Consensus       319 ~GKvvl~~  326 (326)
T COG0604         319 TGKVVLKV  326 (326)
T ss_pred             cceEEEeC
Confidence             4999874

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=6.1e-41  Score=278.03  Aligned_cols=267  Identities=22%  Similarity=0.280  Sum_probs=229.9

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      |.|.+.++|++||.|.+|+|+++|++|+++++||||....                              .-        
T Consensus        57 GlY~~~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl~------------------------------~~--------   98 (336)
T KOG1197|consen   57 GLYDPAPLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYLN------------------------------PF--------   98 (336)
T ss_pred             cccCCCCCCcCCCcccceEEEEecCCccccccccEEEEec------------------------------cc--------
Confidence            4566688999999999999999999999999999996421                              11        


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGA  159 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la  159 (326)
                                 |.|+|++.+|...++++|+.+++++||++.+.++|||..+++..++++|++||+|.| |++|++++||+
T Consensus        99 -----------g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~  167 (336)
T KOG1197|consen   99 -----------GAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLL  167 (336)
T ss_pred             -----------hhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHH
Confidence                       399999999999999999999999999999999999998999999999999999965 99999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      |+.|+ .+|++.++.++++.+++.|++|.|+++.   +++.+++.+.+++ |+|+++|.+|... +...+.+|++. |.+
T Consensus       168 ra~~a-~tI~~asTaeK~~~akenG~~h~I~y~~---eD~v~~V~kiTngKGVd~vyDsvG~dt-~~~sl~~Lk~~-G~m  241 (336)
T KOG1197|consen  168 RAVGA-HTIATASTAEKHEIAKENGAEHPIDYST---EDYVDEVKKITNGKGVDAVYDSVGKDT-FAKSLAALKPM-GKM  241 (336)
T ss_pred             HhcCc-EEEEEeccHHHHHHHHhcCCcceeeccc---hhHHHHHHhccCCCCceeeeccccchh-hHHHHHHhccC-ceE
Confidence            99999 9999999999999999999999999999   9999999999988 9999999999999 99999999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCC-CCC----HHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHH
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-KSD----IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI  313 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~----~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~  313 (326)
                      +.+|... ....++++..+..|.+.+...++-.+.. +..    ..+++.++.+|.++++  |.++||++++.+|+..++
T Consensus       242 VSfG~as-gl~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~--I~~~ypls~vadA~~die  318 (336)
T KOG1197|consen  242 VSFGNAS-GLIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIH--IDHVYPLSKVADAHADIE  318 (336)
T ss_pred             EEecccc-CCCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCcccee--eeeecchHHHHHHHHHHH
Confidence            9999854 3444555555555666665543333322 222    3456777888977766  999999999999999999


Q ss_pred             cCcee-EEEEEeC
Q 020435          314 KGKCL-RCVIWMG  325 (326)
Q Consensus       314 ~~~~~-k~vv~~~  325 (326)
                      +.+.. |+++-+.
T Consensus       319 srktvGkvlLlp~  331 (336)
T KOG1197|consen  319 SRKTVGKVLLLPG  331 (336)
T ss_pred             hhhccceEEEeCC
Confidence            88765 9998764

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=2.2e-39  Score=298.03  Aligned_cols=283  Identities=26%  Similarity=0.456  Sum_probs=247.7

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETI   85 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~   85 (326)
                      .+|.++|||++|+|+++|++++++++||+|.+.+...|+.|.+|+.+++++|....+   .|+. ..|            
T Consensus        63 ~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g------------  127 (351)
T cd08233          63 TAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGGG------------  127 (351)
T ss_pred             CCCceecccceEEEEEeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCCC------------
Confidence            378999999999999999999999999999999999999999999999999975442   2322 134            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                             +|+||+.++...++++|+++++++++++ .++.|||+++ ..++++++++|||+|+|++|++++|+|+..|+.
T Consensus       128 -------~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~  198 (351)
T cd08233         128 -------GFAEYVVVPAYHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGAS  198 (351)
T ss_pred             -------ceeeEEEechHHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence                   9999999999999999999999998876 5888999986 778899999999999899999999999999986


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +|+++++++++.+.++++|++.++++.+   .++.+.+++.+++ ++|++|||.|....+..++++++++ |+++.+|..
T Consensus       199 ~v~~~~~~~~~~~~~~~~ga~~~i~~~~---~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~  274 (351)
T cd08233         199 KIIVSEPSEARRELAEELGATIVLDPTE---VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIW  274 (351)
T ss_pred             EEEEECCCHHHHHHHHHhCCCEEECCCc---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccC
Confidence            7999999999999999999999999887   7888889888887 8999999999766689999999998 999999975


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccH-HHHHHHHHcCce--eEEE
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI-NSAFDLLIKGKC--LRCV  321 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i-~~a~~~~~~~~~--~k~v  321 (326)
                      .  ....+++..++.+++++.+++...   .+++++++++++++++++.++++++|+++++ ++|++.+.+++.  +|++
T Consensus       275 ~--~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v  349 (351)
T cd08233         275 E--KPISFNPNDLVLKEKTLTGSICYT---REDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKIL  349 (351)
T ss_pred             C--CCCccCHHHHHhhCcEEEEEeccC---cchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEE
Confidence            4  345677777788899999886432   4689999999999998877778899999996 799999988774  5888


Q ss_pred             E
Q 020435          322 I  322 (326)
Q Consensus       322 v  322 (326)
                      |
T Consensus       350 ~  350 (351)
T cd08233         350 V  350 (351)
T ss_pred             e
Confidence            7

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=2.4e-39  Score=298.15  Aligned_cols=282  Identities=26%  Similarity=0.369  Sum_probs=224.1

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETI   85 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~   85 (326)
                      .+|.++|||++|+|+++|++ ++|++||||+..+..+|+.|.+|+.+++++|...... ..|.. .+             
T Consensus        56 ~~p~i~G~e~~G~V~~vG~~-~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~-------------  120 (355)
T cd08230          56 EDFLVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLH-------------  120 (355)
T ss_pred             CCCeeeccccceEEEEecCC-CCCCCCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCC-------------
Confidence            57899999999999999999 9999999999998899999999999999999765421 11221 22             


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhh------hcccCCCCEEEEEccCHHHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR------TANVEVGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~------~~~~~~~~~vlI~Gag~~G~~a~~la  159 (326)
                            |+|+||+.++++.++++|++++ +. +++..+++++++++..      ..+.+++++|||+|+|++|++++|+|
T Consensus       121 ------G~~aey~~~~~~~~~~~P~~~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~a  192 (355)
T cd08230         121 ------GFMREYFVDDPEYLVKVPPSLA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLL  192 (355)
T ss_pred             ------ccceeEEEeccccEEECCCCCC-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHH
Confidence                  4999999999999999999999 44 4444466666654322      22357899999999999999999999


Q ss_pred             HHcCCCEEEEEcC---ChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCc
Q 020435          160 RLCGATRIIGVDV---ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG  236 (326)
Q Consensus       160 ~~~g~~~V~~~~~---~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G  236 (326)
                      |+.|+ +|+++++   ++++.+.++++|++. +++.+   +++.+ .+  ..+++|+||||+|.+..+..++++++++ |
T Consensus       193 k~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~---~~~~~-~~--~~~~~d~vid~~g~~~~~~~~~~~l~~~-G  263 (355)
T cd08230         193 RLRGF-EVYVLNRRDPPDPKADIVEELGATY-VNSSK---TPVAE-VK--LVGEFDLIIEATGVPPLAFEALPALAPN-G  263 (355)
T ss_pred             HHcCC-eEEEEecCCCCHHHHHHHHHcCCEE-ecCCc---cchhh-hh--hcCCCCEEEECcCCHHHHHHHHHHccCC-c
Confidence            99999 8999987   678899999999987 45554   44433 21  1238999999999887789999999998 9


Q ss_pred             EEEEeccCCCCCccccc----HHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCC----CCCcceeeeeccccHHHH
Q 020435          237 KTIVLGVDQPGSQLSLS----SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL----ELDKFVTHEMKFEEINSA  308 (326)
Q Consensus       237 ~~v~~g~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~----~~~~~i~~~~~l~~i~~a  308 (326)
                      +++.+|...+....+++    ...++.|++++.|+..+.   +++++++++++.++.+    .++++++++|+++++++|
T Consensus       264 ~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a  340 (355)
T cd08230         264 VVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNAN---KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEA  340 (355)
T ss_pred             EEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCc---hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHH
Confidence            99999976442344444    345677899999986433   4689999999998862    356678899999999999


Q ss_pred             HHHHHcCceeEEEEEe
Q 020435          309 FDLLIKGKCLRCVIWM  324 (326)
Q Consensus       309 ~~~~~~~~~~k~vv~~  324 (326)
                      ++.+.++. .|++|+|
T Consensus       341 ~~~~~~~~-~K~v~~~  355 (355)
T cd08230         341 LTEKPDGE-IKVVIEW  355 (355)
T ss_pred             HHhcccCC-eEEEeeC
Confidence            99887554 5999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.1e-38  Score=293.91  Aligned_cols=286  Identities=23%  Similarity=0.363  Sum_probs=235.1

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCC-CCCCCccccCCCCCCCCCCCCCCC----CCCCCCCCcccc
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKIS----PWMPRDQTSRFK   78 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~g~~~~~   78 (326)
                      +...+|.++|||++|+|+++|+++++|++||+|++.+.. .|+.|.+|+.++++.|........    .|...+      
T Consensus        59 ~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~------  132 (357)
T PLN02514         59 GMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQ------  132 (357)
T ss_pred             CcCCCCccCCceeeEEEEEECCCcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCC------
Confidence            334579999999999999999999999999999866544 699999999999999976532100    011122      


Q ss_pred             ccCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHH
Q 020435           79 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEG  158 (326)
Q Consensus        79 ~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~l  158 (326)
                                   |+|+||+.++...++++|+++++++++.+++.+.|||+++......++|++|+|+|+|++|++++|+
T Consensus       133 -------------G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~  199 (357)
T PLN02514        133 -------------GGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKI  199 (357)
T ss_pred             -------------CccccEEEEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHH
Confidence                         4999999999999999999999999999999999999987666666899999999889999999999


Q ss_pred             HHHcCCCEEEEEcCChhHHHH-HHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcE
Q 020435          159 ARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK  237 (326)
Q Consensus       159 a~~~g~~~V~~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~  237 (326)
                      ||+.|+ +|+++++++++.+. ++++|++++++..+   .   +.+.+.+. ++|++|||+|....+..++++++++ |+
T Consensus       200 Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~---~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~  270 (357)
T PLN02514        200 AKAMGH-HVTVISSSDKKREEALEHLGADDYLVSSD---A---AEMQEAAD-SLDYIIDTVPVFHPLEPYLSLLKLD-GK  270 (357)
T ss_pred             HHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecCCC---h---HHHHHhcC-CCcEEEECCCchHHHHHHHHHhccC-CE
Confidence            999999 88888888777655 46699988887544   2   33444443 7999999999876689999999998 99


Q ss_pred             EEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce
Q 020435          238 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC  317 (326)
Q Consensus       238 ~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~  317 (326)
                      ++.+|...  ....++...++.+++++.+++.+.   ..+++++++++++|++.  +++ ++|+++++.+|++.+.+++.
T Consensus       271 iv~~G~~~--~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~~~~g~l~--~~i-~~~~l~~~~~A~~~~~~~~~  342 (357)
T PLN02514        271 LILMGVIN--TPLQFVTPMLMLGRKVITGSFIGS---MKETEEMLEFCKEKGLT--SMI-EVVKMDYVNTAFERLEKNDV  342 (357)
T ss_pred             EEEECCCC--CCCcccHHHHhhCCcEEEEEecCC---HHHHHHHHHHHHhCCCc--CcE-EEEcHHHHHHHHHHHHcCCC
Confidence            99999753  234666777788899999987544   35799999999999754  445 68999999999999999887


Q ss_pred             e-EEEEEeC
Q 020435          318 L-RCVIWMG  325 (326)
Q Consensus       318 ~-k~vv~~~  325 (326)
                      . |+++.++
T Consensus       343 ~gk~v~~~~  351 (357)
T PLN02514        343 RYRFVVDVA  351 (357)
T ss_pred             ceeEEEEcc
Confidence            5 9999875

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=2.6e-38  Score=292.91  Aligned_cols=315  Identities=43%  Similarity=0.775  Sum_probs=248.3

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++++.+++||+|++.+..+|+.|.+|+.++++.|.........|...++..+.. -+|.-.
T Consensus        58 ~~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~  136 (373)
T cd08299          58 TPFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPI  136 (373)
T ss_pred             CCCCccccccceEEEEEeCCCCccCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCccc
Confidence            3578999999999999999999999999999998889999999999999999976543211122111100000 001111


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                      +++.+.|+|+||++++++.++++|+++++++++++.+++.|||+++.+.++++++++|||+|+|++|++++++|+..|+.
T Consensus       137 ~~~~~~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~  216 (373)
T cd08299         137 HHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAS  216 (373)
T ss_pred             ccccCCCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            23334579999999999999999999999999999999999999888889999999999998899999999999999986


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHh-hcCCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC-RKGWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~  244 (326)
                      +|+++++++++.+.++++|++++++..+ ..+++.+.+++++++++|+++||.|.+..+..++..+ +++ |+++.+|..
T Consensus       217 ~Vi~~~~~~~~~~~a~~lGa~~~i~~~~-~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~  294 (373)
T cd08299         217 RIIAVDINKDKFAKAKELGATECINPQD-YKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVP  294 (373)
T ss_pred             eEEEEcCCHHHHHHHHHcCCceEecccc-cchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccC
Confidence            7999999999999999999999998764 1123667777776668999999999866677766655 577 999999975


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                      ......++.... +.++.++.+++.+....++++.++++.+.++.+++++++++.|+++++++|++.+.+++..|+++++
T Consensus       295 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~  373 (373)
T cd08299         295 PSSQNLSINPML-LLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF  373 (373)
T ss_pred             CCCceeecCHHH-HhcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence            332234444432 3457888888766544445677888888888777777788999999999999999988777888864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=3.6e-38  Score=291.32  Aligned_cols=312  Identities=32%  Similarity=0.562  Sum_probs=249.5

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC-Ccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR-GET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~-~~~   84 (326)
                      ..+|.++|||++|+|+++|++++++++||+|++.+. .|+.|.+|+.+++++|......-..+...+|..-+.... .++
T Consensus        53 ~~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (365)
T cd08278          53 TPLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPV  131 (365)
T ss_pred             CCCCcccccceeEEEEEeCCCcccCCCCCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCccc
Confidence            356889999999999999999999999999998764 899999999999999976542111122222200000000 001


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  164 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~  164 (326)
                      ..++..+|+|++|+.++++.++++|+++++++++.+++.+.||+.++.....++++++|||+|+|++|++++|+|++.|+
T Consensus       132 ~~~~~~~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~  211 (365)
T cd08278         132 HGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGC  211 (365)
T ss_pred             ccccccccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            11123456999999999999999999999999999999999999988888889999999999889999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++|+++++++++.+.++++|+++++++.+   .++.+.+++.+++++|+++||+|+...+..++++++++ |+++.+|..
T Consensus       212 ~~v~~~~~~~~k~~~~~~~g~~~~i~~~~---~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~  287 (365)
T cd08278         212 TTIIAVDIVDSRLELAKELGATHVINPKE---EDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAP  287 (365)
T ss_pred             CeEEEEeCCHHHHHHHHHcCCcEEecCCC---cCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcC
Confidence            66999999999999999999999998877   67888888888339999999999866689999999998 999999875


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEE
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  323 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~  323 (326)
                      .......++...++.++.++.++........+.+++++++++++++++..++ ..|+++++++|++.+.+++..|++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~-~~~~l~~~~~a~~~~~~~~~~k~~~~  365 (365)
T cd08278         288 PPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLV-TFYPFEDINQAIADSESGKVIKPVLR  365 (365)
T ss_pred             CCCCccccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHhe-EEecHHHHHHHHHHHHCCCceEEEEC
Confidence            3333455666666577888888765433224567889999999987553344 68999999999999998877798874

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.3e-37  Score=286.20  Aligned_cols=295  Identities=27%  Similarity=0.353  Sum_probs=240.6

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCc
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE   83 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~   83 (326)
                      +...+|.++|||++|+|+++|++++++++||+|++.+..+|+.|..|..++.+.|.........+...+           
T Consensus        49 ~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~-----------  117 (351)
T cd08285          49 PGERHGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKD-----------  117 (351)
T ss_pred             CCCCCCcccCcceEEEEEEecCCcCccCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCC-----------
Confidence            334668999999999999999999999999999998888999999999999999976431100111123           


Q ss_pred             ccccccccccccceEEeccc--ceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           84 TIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~--~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                              |+|+||+.++.+  .++++|+++++++++.++..+.|||++ .+.++++++++|||+|+|++|++++|+|+.
T Consensus       118 --------g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~-~~~~~~~~g~~vlI~g~g~iG~~~~~lak~  188 (351)
T cd08285         118 --------GVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHG-AELANIKLGDTVAVFGIGPVGLMAVAGARL  188 (351)
T ss_pred             --------cceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHHH-HHccCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence                    499999999874  899999999999999998899999997 477889999999999889999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEE
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  240 (326)
                      +|+..|+++++++++.+.++++|++++++..+   .++.+.+++.+++ ++|++|||.++...+..++++++++ |+++.
T Consensus       189 ~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~  264 (351)
T cd08285         189 RGAGRIIAVGSRPNRVELAKEYGATDIVDYKN---GDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISN  264 (351)
T ss_pred             cCCCeEEEEeCCHHHHHHHHHcCCceEecCCC---CCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEE
Confidence            99966999999999999999999999999877   7788888888776 9999999999876689999999998 99999


Q ss_pred             eccCCCCCcccccH--HHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCc-ceeeeeccccHHHHHHHHHcCce
Q 020435          241 LGVDQPGSQLSLSS--FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDK-FVTHEMKFEEINSAFDLLIKGKC  317 (326)
Q Consensus       241 ~g~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~i~~~~~l~~i~~a~~~~~~~~~  317 (326)
                      +|.........++.  .....+..++.+....  ...++++++++++++|++++.. ...+.++++++++|++.+.+++.
T Consensus       265 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~  342 (351)
T cd08285         265 VNYYGEDDYLPIPREEWGVGMGHKTINGGLCP--GGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPD  342 (351)
T ss_pred             ecccCCCceeecChhhhhhhccccEEEEeecC--CccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccC
Confidence            98754322233332  2222345666654321  1246799999999999888743 34456899999999999998763


Q ss_pred             --eEEEEEe
Q 020435          318 --LRCVIWM  324 (326)
Q Consensus       318 --~k~vv~~  324 (326)
                        .|++|++
T Consensus       343 ~~~k~~~~~  351 (351)
T cd08285         343 DLIKPVIIF  351 (351)
T ss_pred             CeEEEEEeC
Confidence              5999874

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=2.9e-37  Score=282.51  Aligned_cols=289  Identities=19%  Similarity=0.386  Sum_probs=238.4

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      +.|...+|.++|||++|+|+++|++|+.+++||+|++.+..+|+.|.+|..+++++|....+   .++..+|        
T Consensus        47 ~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g--------  115 (339)
T PRK10083         47 HNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRDG--------  115 (339)
T ss_pred             CCCcCCCCcccccceEEEEEEECCCCccCCCCCEEEEccccCCCCCccccCcCcccCCCCce---EEEccCC--------
Confidence            33444679999999999999999999999999999999999999999999999999976543   3333344        


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                                 +|+||+.++...++++|+++++++++ +..++.++|+ +.+..+++++++|+|+|+|++|++++|+|+.
T Consensus       116 -----------~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~  182 (339)
T PRK10083        116 -----------GFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKG  182 (339)
T ss_pred             -----------cceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence                       99999999999999999999998876 4457888886 5677899999999999999999999999996


Q ss_pred             -cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          162 -CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       162 -~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                       +|+..++++++++++.+.++++|++++++..+   .++.+.+..  .+ ++|++|||.|.+..+..++++++++ |+++
T Consensus       183 ~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~---~~~~~~~~~--~g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v  256 (339)
T PRK10083        183 VYNVKAVIVADRIDERLALAKESGADWVINNAQ---EPLGEALEE--KGIKPTLIIDAACHPSILEEAVTLASPA-ARIV  256 (339)
T ss_pred             hCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc---ccHHHHHhc--CCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEE
Confidence             69856888888999999999999999998876   566666643  23 6789999999776689999999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc-e-
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-C-  317 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~-~-  317 (326)
                      .+|....  ...+....+..+++++.++..    ..+++++++++++++.+++..++++.|+++++++|++.+.+++ . 
T Consensus       257 ~~g~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~  330 (339)
T PRK10083        257 LMGFSSE--PSEIVQQGITGKELSIFSSRL----NANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHC  330 (339)
T ss_pred             EEccCCC--CceecHHHHhhcceEEEEEec----ChhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCce
Confidence            9987532  233344444556777777643    2467999999999998877655779999999999999998653 3 


Q ss_pred             eEEEEEeCC
Q 020435          318 LRCVIWMGE  326 (326)
Q Consensus       318 ~k~vv~~~~  326 (326)
                      .|+++++.+
T Consensus       331 ~kvvv~~~~  339 (339)
T PRK10083        331 CKVLLTFAE  339 (339)
T ss_pred             EEEEEecCC
Confidence            599998864

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=1.1e-36  Score=281.20  Aligned_cols=311  Identities=44%  Similarity=0.729  Sum_probs=252.7

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|+|++|+|+++|++++.+++||+|++.+..+|++|.+|+.++++.|..... +.+|...+++.++.. .|.+.
T Consensus        51 ~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~  128 (363)
T cd08279          51 APLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAG-ILGGQLPDGTRRFTA-DGEPV  128 (363)
T ss_pred             CCCCccccccceEEEEEeCCCccccCCCCEEEECCCCCCCCChhhcCCCcccCccccc-ccccccCCCcccccc-cCccc
Confidence            3567899999999999999999999999999999999999999999999999975431 111111112111111 12222


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                      ..+...|+|++|+.++++.++++|+++++++++++++.+.|||.++++..++.++++|||+|+|++|++++++|+..|+.
T Consensus       129 ~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~  208 (363)
T cd08279         129 GAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGAS  208 (363)
T ss_pred             cccccCccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            22334569999999999999999999999999999999999999888889999999999998899999999999999994


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +|+++++++++.+.++++|++++++.+.   .++.+.+++++.+ ++|++|||.+........+++++++ |+++.++..
T Consensus       209 ~Vi~~~~~~~~~~~~~~~g~~~vv~~~~---~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~  284 (363)
T cd08279         209 RIIAVDPVPEKLELARRFGATHTVNASE---DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMG  284 (363)
T ss_pred             cEEEEcCCHHHHHHHHHhCCeEEeCCCC---ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecC
Confidence            4999999999999999999999998877   6788888888766 9999999999766689999999998 999999865


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEE
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  322 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv  322 (326)
                      .......++...+..++..+.++.++.....+.+++++++++++.+++.+.+.++|+++++++|++.+.+++..|.||
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         285 PPGETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             CCCcccccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            433445566666665677777776554334567899999999998876555678999999999999999887766654

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=5e-37  Score=280.36  Aligned_cols=283  Identities=22%  Similarity=0.368  Sum_probs=241.3

Q ss_pred             CCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            3 DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         3 ~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      .|...+|.++|||++|+|+++|++++++++||+|++.+ ...|+.|.+|+.++++.|.....   .|+...|        
T Consensus        49 ~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~g--------  117 (333)
T cd08296          49 MPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRDG--------  117 (333)
T ss_pred             CCCCCCCcccCcceeEEEEEECCCCccCCCCCEEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccCC--------
Confidence            34446788999999999999999999999999998754 46799999999999999988775   4554445        


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                                 ++++|+.++.+.++++|+++++++++.+++.+.|||+++. ..++.++++|||+|+|++|++++++|++
T Consensus       118 -----------~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~  185 (333)
T cd08296         118 -----------GYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAK  185 (333)
T ss_pred             -----------cceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence                       9999999999999999999999999999999999999764 4589999999999999999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +|+ +|+++++++++.+.++++|++++++..+   .++.+.++++  +++|+++|+.+....+...+++++++ |+++.+
T Consensus       186 ~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~  258 (333)
T cd08296         186 MGF-RTVAISRGSDKADLARKLGAHHYIDTSK---EDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLIL  258 (333)
T ss_pred             CCC-eEEEEeCChHHHHHHHHcCCcEEecCCC---ccHHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccC-CEEEEE
Confidence            999 8999999999999999999999998877   6677777665  37999999997666689999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EE
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RC  320 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~  320 (326)
                      |...  ...+++...++.+++++.++..+.   ..++..+++++++++++.  .+ +.|+++++.+|++.+.+++.. |+
T Consensus       259 g~~~--~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gk~  330 (333)
T cd08296         259 GAAG--EPVAVSPLQLIMGRKSIHGWPSGT---ALDSEDTLKFSALHGVRP--MV-ETFPLEKANEAYDRMMSGKARFRV  330 (333)
T ss_pred             ecCC--CCCCcCHHHHhhcccEEEEeCcCC---HHHHHHHHHHHHhCCCCc--eE-EEEEHHHHHHHHHHHHCCCCceeE
Confidence            8754  345566666778899999986332   357888999998886543  35 689999999999999988875 98


Q ss_pred             EEE
Q 020435          321 VIW  323 (326)
Q Consensus       321 vv~  323 (326)
                      +++
T Consensus       331 v~~  333 (333)
T cd08296         331 VLT  333 (333)
T ss_pred             EeC
Confidence            874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=1.2e-37  Score=285.22  Aligned_cols=272  Identities=22%  Similarity=0.233  Sum_probs=213.0

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|.+  +|++||||++.+...|+ |..|  ...++|....+   .|...+|            
T Consensus        56 ~~~P~i~GhE~~G~V~~~g~~--~~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~~~G------------  115 (341)
T cd08237          56 KKLPMALIHEGIGVVVSDPTG--TYKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSGYDG------------  115 (341)
T ss_pred             CCCCeeccceeEEEEEeeCCC--ccCCCCEEEECCCCCch-hccc--chhccCCCcce---eEecCCC------------
Confidence            368999999999999998764  79999999998887787 4455  35677865543   3433445            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhh--hcccCCCCEEEEEccCHHHHHHHHHHHH-c
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGLGSIGLAVAEGARL-C  162 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~--~~~~~~~~~vlI~Gag~~G~~a~~la~~-~  162 (326)
                             +|+||+.+|+++++++|+++|+++|+++. ++++||+++..  .+.+++|++|||+|+|++|++++|+++. .
T Consensus       116 -------~~aey~~v~~~~~~~vP~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~  187 (341)
T cd08237         116 -------FMQDYVFLPPDRLVKLPDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIY  187 (341)
T ss_pred             -------ceEEEEEEchHHeEECCCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhc
Confidence                   99999999999999999999999887665 88999998654  3456889999999999999999999986 6


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCc---HHHHHHHHHHhhcCCcEE
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL---ASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~---~~~~~~~~~~l~~~~G~~  238 (326)
                      |..+|+++++++++++++++.+++..++       ++       ..+ ++|+||||+|+   +..+..++++++++ |++
T Consensus       188 g~~~vi~~~~~~~k~~~a~~~~~~~~~~-------~~-------~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~i  252 (341)
T cd08237         188 PESKLVVFGKHQEKLDLFSFADETYLID-------DI-------PEDLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTI  252 (341)
T ss_pred             CCCcEEEEeCcHhHHHHHhhcCceeehh-------hh-------hhccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEE
Confidence            6448999999999999988766643321       11       122 79999999994   45688999999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCC---CCCCCcceeeeeccc---cHHHHHHHH
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK---ELELDKFVTHEMKFE---EINSAFDLL  312 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~i~~~~~l~---~i~~a~~~~  312 (326)
                      +++|...  ...+++...++.|++++.++....   .+++++++++++++   +.++++++++.|+++   ++.++++..
T Consensus       253 v~~G~~~--~~~~~~~~~~~~k~~~i~g~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~  327 (341)
T cd08237         253 GLMGVSE--YPVPINTRMVLEKGLTLVGSSRST---REDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESD  327 (341)
T ss_pred             EEEeecC--CCcccCHHHHhhCceEEEEecccC---HHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHH
Confidence            9999743  345666677788899999985432   35799999999999   346778899999986   455555555


Q ss_pred             HcCceeEEEEEeC
Q 020435          313 IKGKCLRCVIWMG  325 (326)
Q Consensus       313 ~~~~~~k~vv~~~  325 (326)
                      .++..+|++|+++
T Consensus       328 ~~~~~gKvvi~~~  340 (341)
T cd08237         328 LTNSWGKTVMEWE  340 (341)
T ss_pred             hhcCcceEEEEee
Confidence            5444459999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=8.5e-37  Score=279.50  Aligned_cols=283  Identities=29%  Similarity=0.469  Sum_probs=244.5

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      +..+|.++|||++|+|+++|+++.++++||+|++.+..+|+.|..|+.+++++|.....   .|+..+|           
T Consensus        54 ~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-----------  119 (340)
T cd05284          54 PYKLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-----------  119 (340)
T ss_pred             cCCCCeecccceeEEEEEeCCCCCcCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-----------
Confidence            45678999999999999999999999999999999989999999999999999998886   6665566           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhh-cccCCCCEEEEEccCHHHHHHHHHHHHcC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCG  163 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~-~~~~~~~~vlI~Gag~~G~~a~~la~~~g  163 (326)
                              +|++|+.++.+.++++|+++++++++++++.+.|||+++... ..+.++++|||+|+|.+|++++++|+..|
T Consensus       120 --------~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g  191 (340)
T cd05284         120 --------GFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALT  191 (340)
T ss_pred             --------cceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhC
Confidence                    999999999999999999999999999999999999987665 46888999999999789999999999999


Q ss_pred             -CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          164 -ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       164 -~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                       . +|+++++++++.+.++++|+++++++++   . +.+.+++++++ ++|+++||.++......++++++++ |+++.+
T Consensus       192 ~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~  265 (340)
T cd05284         192 PA-TVIAVDRSEEALKLAERLGADHVLNASD---D-VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIV  265 (340)
T ss_pred             CC-cEEEEeCCHHHHHHHHHhCCcEEEcCCc---c-HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEE
Confidence             7 8999999999999999999999999887   5 78888888877 9999999999866689999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EE
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RC  320 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~  320 (326)
                      |....   ..++....+.+++++.++...   ..++++.++++++++.+++  .+ +.|+++++++|++.+++++.. |+
T Consensus       266 g~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~g~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkv  336 (340)
T cd05284         266 GYGGH---GRLPTSDLVPTEISVIGSLWG---TRAELVEVVALAESGKVKV--EI-TKFPLEDANEALDRLREGRVTGRA  336 (340)
T ss_pred             cCCCC---CccCHHHhhhcceEEEEEecc---cHHHHHHHHHHHHhCCCCc--ce-EEEeHHHHHHHHHHHHcCCccceE
Confidence            86532   334444445678888887533   2467889999999997764  23 679999999999999988765 88


Q ss_pred             EEEe
Q 020435          321 VIWM  324 (326)
Q Consensus       321 vv~~  324 (326)
                      ++.+
T Consensus       337 v~~~  340 (340)
T cd05284         337 VLVP  340 (340)
T ss_pred             EecC
Confidence            8753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=2e-36  Score=281.68  Aligned_cols=307  Identities=27%  Similarity=0.383  Sum_probs=244.5

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCC----CCCCCCCCCccc
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI----SPWMPRDQTSRF   77 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~g~~~~   77 (326)
                      .++..++|.++|||++|+|+++|++++++++||+|++.+..+|+.|.+|+.+++++|+......    .+|....|.+..
T Consensus        48 ~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (386)
T cd08283          48 YIPGMKKGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGY  127 (386)
T ss_pred             CCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCCChhhcCCCcccCCCccccccccccccccccccccc
Confidence            3444457899999999999999999999999999999999999999999999999998654310    011111110000


Q ss_pred             cccCCcccccc-cccccccceEEeccc--ceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHH
Q 020435           78 KDLRGETIHHF-VSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA  154 (326)
Q Consensus        78 ~~~~~~~~~~~-~~~g~~a~~~~v~~~--~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~  154 (326)
                      .       +.+ ...|+|++|++++.+  .++++|+++++++|+++++.++|||+++ +.+++.++++|||+|+|++|++
T Consensus       128 ~-------~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~  199 (386)
T cd08283         128 S-------HLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLF  199 (386)
T ss_pred             c-------cccCCCCCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHH
Confidence            0       000 113599999999988  8999999999999999999999999987 7888999999999988999999


Q ss_pred             HHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCc-cHHHHHHHhcCC-CccEEEEcCCcH-----------
Q 020435          155 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK-SVSQIIIDMTDG-GADYCFECVGLA-----------  221 (326)
Q Consensus       155 a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~~~~~i~~~~~~-g~d~v~d~~g~~-----------  221 (326)
                      ++++|++.|+.+|+++++++++.+.+++++...++++.+   . ++.+.+++++++ ++|++|||+++.           
T Consensus       200 ~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~---~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~  276 (386)
T cd08283         200 AARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEE---VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQ  276 (386)
T ss_pred             HHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCc---chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccc
Confidence            999999999846999999999999999884446777665   4 478888888877 999999999753           


Q ss_pred             ----------HHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCC
Q 020435          222 ----------SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE  291 (326)
Q Consensus       222 ----------~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~  291 (326)
                                ..+..++++++++ |+++.+|..... ...++...++.+++++.++...   ..+.+++++++++++++.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~g~l~  351 (386)
T cd08283         277 ALLKLETDRPDALREAIQAVRKG-GTVSIIGVYGGT-VNKFPIGAAMNKGLTLRMGQTH---VQRYLPRLLELIESGELD  351 (386)
T ss_pred             cccccccCchHHHHHHHHHhccC-CEEEEEcCCCCC-cCccCHHHHHhCCcEEEeccCC---chHHHHHHHHHHHcCCCC
Confidence                      3478899999998 999999875322 3345554566778888887422   245788999999999887


Q ss_pred             CCcceeeeeccccHHHHHHHHHcCc-e-eEEEEEe
Q 020435          292 LDKFVTHEMKFEEINSAFDLLIKGK-C-LRCVIWM  324 (326)
Q Consensus       292 ~~~~i~~~~~l~~i~~a~~~~~~~~-~-~k~vv~~  324 (326)
                      ...++++.|+++++++|++.+.+++ . +|++|++
T Consensus       352 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         352 PSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             hhHceEEEecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            7666778999999999999998876 3 4999863

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=2.8e-36  Score=282.68  Aligned_cols=279  Identities=19%  Similarity=0.207  Sum_probs=225.1

Q ss_pred             CCCcccCCceeEEEEEecCCCC-CccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            7 VFPRILGHEAIGVVESVGENVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~-~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      .+|+++|||++|+|+++|++|+ +|++||||++.+...|+.|..|..              +|+..+|            
T Consensus        61 ~~p~i~GhE~~G~V~~vG~~v~~~~~vGdrV~~~~~~~c~~~~~c~~--------------~g~~~~G------------  114 (410)
T cd08238          61 KEPVILGHEFAGTILKVGKKWQGKYKPGQRFVIQPALILPDGPSCPG--------------YSYTYPG------------  114 (410)
T ss_pred             CCCceeccccEEEEEEeCCCccCCCCCCCEEEEcCCcCCCCCCCCCC--------------ccccCCC------------
Confidence            4789999999999999999998 699999999998888998887721              2333345            


Q ss_pred             ccccccccccceEEeccc----ceEEcCCCCCccccccccchhhh---hhhhh--------hhhcccCCCCEEEEEcc-C
Q 020435           86 HHFVSVSSFSEYTVLDIA----HVVKVDPTVPPNRACLLSCGVST---GVGAA--------WRTANVEVGSTVVIFGL-G  149 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~----~~~~ip~~~s~~~aa~l~~~~~t---a~~~l--------~~~~~~~~~~~vlI~Ga-g  149 (326)
                             +|+||++++++    .++++|+++++++|+++. ++++   ++.++        .+.+++++|++|+|+|+ |
T Consensus       115 -------~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~e-pl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G  186 (410)
T cd08238         115 -------GLATYHIIPNEVMEQDCLLIYEGDGYAEASLVE-PLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAG  186 (410)
T ss_pred             -------cceEEEEecHHhccCCeEECCCCCCHHHHhhcc-hHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCC
Confidence                   99999999987    689999999999988653 2222   33322        24577899999999985 9


Q ss_pred             HHHHHHHHHHHHcC--CCEEEEEcCChhHHHHHHhc--------CCc-EEEcCCCCCCccHHHHHHHhcCC-CccEEEEc
Q 020435          150 SIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRF--------GVT-EFVNSKNCGDKSVSQIIIDMTDG-GADYCFEC  217 (326)
Q Consensus       150 ~~G~~a~~la~~~g--~~~V~~~~~~~~~~~~~~~~--------g~~-~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~  217 (326)
                      ++|++++|+|++.|  +.+|+++++++++++.++++        |++ +++++.+  ..++.+.+++++++ ++|++||+
T Consensus       187 ~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~--~~~~~~~v~~~t~g~g~D~vid~  264 (410)
T cd08238         187 PMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPAT--IDDLHATLMELTGGQGFDDVFVF  264 (410)
T ss_pred             HHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCc--cccHHHHHHHHhCCCCCCEEEEc
Confidence            99999999999975  44799999999999999987        666 5677543  14677888888888 99999999


Q ss_pred             CCcHHHHHHHHHHhhcCCcEEEEeccCCC-CCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcce
Q 020435          218 VGLASLVQEAYACCRKGWGKTIVLGVDQP-GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFV  296 (326)
Q Consensus       218 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i  296 (326)
                      +|.+..+..++++++++ |+++.++.... ....+++...++.+++++.|+..+.   +.+++++++++++|++++.+++
T Consensus       265 ~g~~~~~~~a~~~l~~~-G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~li~~g~i~~~~~i  340 (410)
T cd08238         265 VPVPELVEEADTLLAPD-GCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGN---TDDMKEAIDLMAAGKLNPARMV  340 (410)
T ss_pred             CCCHHHHHHHHHHhccC-CeEEEEEccCCCCccccccHHHhhhcCcEEEEeCCCC---HHHHHHHHHHHHcCCCchhhcE
Confidence            99877799999999998 98887754221 2234567677788899999986432   4679999999999999988899


Q ss_pred             eeeeccccHHHHHHHHHcCceeEEEEEeC
Q 020435          297 THEMKFEEINSAFDLLIKGKCLRCVIWMG  325 (326)
Q Consensus       297 ~~~~~l~~i~~a~~~~~~~~~~k~vv~~~  325 (326)
                      +++|+++++++|++.+..+..+|+++.++
T Consensus       341 t~~~~l~~~~~A~~~~~~~~~gKvvl~~~  369 (410)
T cd08238         341 THIGGLNAAAETTLNLPGIPGGKKLIYTQ  369 (410)
T ss_pred             EEEecHHHHHHHHHHhhccCCceEEEECC
Confidence            99999999999999999443459999874

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=3.8e-36  Score=275.89  Aligned_cols=295  Identities=29%  Similarity=0.422  Sum_probs=240.9

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      .++..++|.++|||++|+|+++|++++++++||+|++.+..+|+.|.+|..+....|.........+...+         
T Consensus        48 ~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  118 (347)
T cd05278          48 GVPGAKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRID---------  118 (347)
T ss_pred             CCCCCCCCceeccceEEEEEEECCCccccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCC---------
Confidence            34445678999999999999999999999999999999999999999999999999866443111111223         


Q ss_pred             CcccccccccccccceEEeccc--ceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~--~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la  159 (326)
                                |+|++|++++++  +++++|+++++++++++++.++|||+++ ...+++++++|||.|+|.+|++++|+|
T Consensus       119 ----------g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqla  187 (347)
T cd05278         119 ----------GGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGA  187 (347)
T ss_pred             ----------CeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHH
Confidence                      499999999987  8999999999999999999999999986 778899999999988899999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      +.+|..+|+++++++++.+.++++|++++++..+   .++.+.+++.+++ ++|++|||.+....+...+++|+++ |++
T Consensus       188 k~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~  263 (347)
T cd05278         188 RLLGAARIIAVDSNPERLDLAKEAGATDIINPKN---GDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTI  263 (347)
T ss_pred             HHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc---chHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEE
Confidence            9999647888888888888999999999998887   6788888888876 9999999999855589999999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce-
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-  317 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~-  317 (326)
                      +.+|........... ...+.+++++.++....   .+.+++++++++++.+++...+...+++++++++++.+..++. 
T Consensus       264 v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~  339 (347)
T cd05278         264 ANVGVYGKPDPLPLL-GEWFGKNLTFKTGLVPV---RARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDG  339 (347)
T ss_pred             EEEcCCCCCcccCcc-chhhhceeEEEeeccCc---hhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCC
Confidence            999854322111111 12234577776654222   4578899999999988765545688999999999999988775 


Q ss_pred             e-EEEEEe
Q 020435          318 L-RCVIWM  324 (326)
Q Consensus       318 ~-k~vv~~  324 (326)
                      . |+++++
T Consensus       340 ~~~~vv~~  347 (347)
T cd05278         340 CIKVVIRP  347 (347)
T ss_pred             ceEEEecC
Confidence            3 888763

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=8e-36  Score=273.68  Aligned_cols=291  Identities=30%  Similarity=0.425  Sum_probs=245.2

Q ss_pred             CCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCC
Q 020435            3 DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG   82 (326)
Q Consensus         3 ~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~   82 (326)
                      ++...+|.++|||++|+|+++|++++.+++||+|++.+...|+.|.+|..+..+.|......  .|...+|         
T Consensus        49 ~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g---------  117 (345)
T cd08286          49 VPTVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLIDG---------  117 (345)
T ss_pred             CCCCCCCceecccceEEEEEeccCccccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccCC---------
Confidence            34445689999999999999999999999999999999999999999999988888765431  2322334         


Q ss_pred             cccccccccccccceEEeccc--ceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           83 ETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        83 ~~~~~~~~~g~~a~~~~v~~~--~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                                +|++|+.++.+  .++++|++++.++++.+++.++|||+++....++.++++|||+|+|++|++++|+|+
T Consensus       118 ----------~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~  187 (345)
T cd08286         118 ----------TQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQ  187 (345)
T ss_pred             ----------eeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH
Confidence                      99999999987  899999999999999999999999997777888999999999988999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      .+|..+|+++++++++.+.++++|+++++++.+   .++.+.+.+++++ ++|++|||++....+..+++.++++ |+++
T Consensus       188 ~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v  263 (345)
T cd08286         188 LYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK---GDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIA  263 (345)
T ss_pred             HcCCCeEEEEcCCHHHHHHHHHhCCCceecccc---ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEE
Confidence            999338999988888999999999999999877   6777888888877 9999999999877688999999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcC---c
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG---K  316 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~---~  316 (326)
                      .+|...  ....+++..++.+++++.+....    .+.++.++++++++.+++.++++++|++++++++++.+...   .
T Consensus       264 ~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~  337 (345)
T cd08286         264 NVGVHG--KPVDLHLEKLWIKNITITTGLVD----TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHK  337 (345)
T ss_pred             EecccC--CCCCcCHHHHhhcCcEEEeecCc----hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCC
Confidence            998643  23455666656778888775322    24688899999999887666677999999999999999876   3


Q ss_pred             eeEEEEEe
Q 020435          317 CLRCVIWM  324 (326)
Q Consensus       317 ~~k~vv~~  324 (326)
                      ..|++|++
T Consensus       338 ~~k~~~~~  345 (345)
T cd08286         338 ALKVIIDF  345 (345)
T ss_pred             eeEEEEeC
Confidence            45999875

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=5.3e-36  Score=279.61  Aligned_cols=283  Identities=19%  Similarity=0.238  Sum_probs=237.0

Q ss_pred             CcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCccccc
Q 020435            9 PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHH   87 (326)
Q Consensus         9 p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~   87 (326)
                      +.++|||++|+|+++|++++.+++||+|++.+...|+.|..|..+.+++|.....   +|+. .+|              
T Consensus        82 ~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~g--------------  144 (393)
T cd08246          82 YHIGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNYG--------------  144 (393)
T ss_pred             ccccccceEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCCC--------------
Confidence            3689999999999999999999999999999999999999999999999976554   4543 234              


Q ss_pred             ccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhh--cccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           88 FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        88 ~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~--~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                           +|++|++++...++++|+++++++++.+.++++|||+++...  ++++++++|+|+|+ |++|++++++|+++|+
T Consensus       145 -----~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~  219 (393)
T cd08246         145 -----SFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA  219 (393)
T ss_pred             -----cceeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC
Confidence                 999999999999999999999999999999999999987654  68899999999997 9999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCC-------------------CccHHHHHHHhcCC--CccEEEEcCCcHHH
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCG-------------------DKSVSQIIIDMTDG--GADYCFECVGLASL  223 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~-------------------~~~~~~~i~~~~~~--g~d~v~d~~g~~~~  223 (326)
                       +++++++++++.+.++++|++++++..+..                   ...+.+.+.+++++  ++|++|||.|+.. 
T Consensus       220 -~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~-  297 (393)
T cd08246         220 -NPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRAT-  297 (393)
T ss_pred             -eEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHh-
Confidence             888889999999999999999999864410                   01356677788776  7999999999855 


Q ss_pred             HHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccc
Q 020435          224 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE  303 (326)
Q Consensus       224 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~  303 (326)
                      +..++++++++ |+++.+|.... ....++...++.++.++.+++...   .+++++++++++++.+..  .+++.|+++
T Consensus       298 ~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~l~~~~~~i~g~~~~~---~~~~~~~~~~~~~~~l~~--~~~~~~~l~  370 (393)
T cd08246         298 FPTSVFVCDRG-GMVVICAGTTG-YNHTYDNRYLWMRQKRIQGSHFAN---DREAAEANRLVMKGRIDP--CLSKVFSLD  370 (393)
T ss_pred             HHHHHHHhccC-CEEEEEcccCC-CCCCCcHHHHhhheeEEEecccCc---HHHHHHHHHHHHcCCcee--eeeEEEeHH
Confidence            88999999998 99999986432 223455555666788888875443   357889999999997663  367899999


Q ss_pred             cHHHHHHHHHcC-cee-EEEE
Q 020435          304 EINSAFDLLIKG-KCL-RCVI  322 (326)
Q Consensus       304 ~i~~a~~~~~~~-~~~-k~vv  322 (326)
                      ++++|++.+.++ +.. |+++
T Consensus       371 ~~~~a~~~~~~~~~~~gkvvv  391 (393)
T cd08246         371 ETPDAHQLMHRNQHHVGNMAV  391 (393)
T ss_pred             HHHHHHHHHHhCccccceEEE
Confidence            999999999887 554 7775

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2e-35  Score=271.03  Aligned_cols=291  Identities=26%  Similarity=0.392  Sum_probs=244.8

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCc
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE   83 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~   83 (326)
                      ++..+|.++|+|++|+|+.+|++++.+++||+|++.+...|++|.+|..+..++|.....   .++..+|          
T Consensus        50 ~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g----------  116 (345)
T cd08260          50 PDVTLPHVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHPG----------  116 (345)
T ss_pred             CCCCCCeeeccceeEEEEEECCCCccCCCCCEEEECCCCCCCCCccccCcCcccCCCCcc---cccCCCC----------
Confidence            334568999999999999999999999999999987778999999999999999988653   4444345          


Q ss_pred             ccccccccccccceEEeccc--ceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           84 TIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~--~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                               +|++|+++++.  +++++|+++++++++.+++.++|||+++.+..++.++++|+|+|+|++|++++++|+.
T Consensus       117 ---------~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~  187 (345)
T cd08260         117 ---------SFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASA  187 (345)
T ss_pred             ---------cceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence                     99999999974  8999999999999999999999999987778889999999999999999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .|+ +|+++++++++.+.++++|++++++..+  ..++.+.++++.++++|++|||.++.......+++++++ |+++.+
T Consensus       188 ~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~  263 (345)
T cd08260         188 LGA-RVIAVDIDDDKLELARELGAVATVNASE--VEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKR-GRHVQV  263 (345)
T ss_pred             cCC-eEEEEeCCHHHHHHHHHhCCCEEEcccc--chhHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEe
Confidence            999 8999999999999999999999988653  245667777776558999999999765588999999998 999999


Q ss_pred             ccCCCCCc-ccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-E
Q 020435          242 GVDQPGSQ-LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-R  319 (326)
Q Consensus       242 g~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k  319 (326)
                      |....... ..++...+..+++++.++...   ..+.++.++++++++.+.+...+.+.++++++++|++.+..++.. |
T Consensus       264 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (345)
T cd08260         264 GLTLGEEAGVALPMDRVVARELEIVGSHGM---PAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGI  340 (345)
T ss_pred             CCcCCCCCccccCHHHHhhcccEEEeCCcC---CHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCce
Confidence            87533222 445555555778888887532   245788999999999877655567899999999999999987765 8


Q ss_pred             EEEE
Q 020435          320 CVIW  323 (326)
Q Consensus       320 ~vv~  323 (326)
                      ++++
T Consensus       341 ~v~~  344 (345)
T cd08260         341 TVIT  344 (345)
T ss_pred             EEec
Confidence            7753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.5e-35  Score=275.64  Aligned_cols=289  Identities=23%  Similarity=0.357  Sum_probs=238.0

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++++.|++||+|++.+..+|+.|..|..+++++|.....   .|+..+|            
T Consensus        85 ~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~g------------  149 (384)
T cd08265          85 TEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSADG------------  149 (384)
T ss_pred             cCCCcccccceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCCC------------
Confidence            4568999999999999999999999999999999999999999999999999986553   5554455            


Q ss_pred             ccccccccccceEEecccceEEcCCCC-------Cccccccccchhhhhhhhhhhh-cccCCCCEEEEEccCHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTV-------PPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAE  157 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~-------s~~~aa~l~~~~~ta~~~l~~~-~~~~~~~~vlI~Gag~~G~~a~~  157 (326)
                             +|++|+.++++.++++|+++       +.+ ++++..+++|||+++... .+++++++|||+|+|++|+++++
T Consensus       150 -------~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~  221 (384)
T cd08265         150 -------AFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIA  221 (384)
T ss_pred             -------cceeeEEechHHeEECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHH
Confidence                   99999999999999999864       444 556667899999988666 68999999999988999999999


Q ss_pred             HHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcH-HHHHHHHHHhhcCC
Q 020435          158 GARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA-SLVQEAYACCRKGW  235 (326)
Q Consensus       158 la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~-~~~~~~~~~l~~~~  235 (326)
                      +|+..|+.+|+++++++++.+.++++|+++++++.+....++.+.+++++++ ++|+|+||.|.. ..+..++++|+++ 
T Consensus       222 lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-  300 (384)
T cd08265         222 LAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-  300 (384)
T ss_pred             HHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-
Confidence            9999998679999988999999999999999987751123678888888887 999999999973 3478899999998 


Q ss_pred             cEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcC
Q 020435          236 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  315 (326)
Q Consensus       236 G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~  315 (326)
                      |+++.+|....  ...+....+..+..++.++....  ....+++++++++++.+++..++++.|+++++++|++.+.+.
T Consensus       301 G~~v~~g~~~~--~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~  376 (384)
T cd08265         301 GKIVYIGRAAT--TVPLHLEVLQVRRAQIVGAQGHS--GHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASER  376 (384)
T ss_pred             CEEEEECCCCC--CCcccHHHHhhCceEEEEeeccC--CcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcC
Confidence            99999986432  23344445555677777765321  234699999999999887655567899999999999997766


Q ss_pred             ceeEEEE
Q 020435          316 KCLRCVI  322 (326)
Q Consensus       316 ~~~k~vv  322 (326)
                      ...|+++
T Consensus       377 ~~~kvvv  383 (384)
T cd08265         377 TDGKITI  383 (384)
T ss_pred             CCceEEe
Confidence            5557775

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=4.9e-35  Score=267.62  Aligned_cols=286  Identities=30%  Similarity=0.525  Sum_probs=239.7

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCc
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE   83 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~   83 (326)
                      +...+|.++|+|++|+|+++|++++++++||+|+..+..+|+.|..|+.++++.|.....   .++...|          
T Consensus        49 ~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g----------  115 (337)
T cd08261          49 PFASYPRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRDG----------  115 (337)
T ss_pred             CcCCCCcccccccEEEEEEeCCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCCC----------
Confidence            334568899999999999999999999999999998888999999999999999953322   2322234          


Q ss_pred             ccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC
Q 020435           84 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG  163 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g  163 (326)
                               +|++|+.++++ ++++|+++++++++++ ..++++++++ +..++.++++|||+|+|.+|++++|+|+.+|
T Consensus       116 ---------~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g  183 (337)
T cd08261         116 ---------GFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARG  183 (337)
T ss_pred             ---------cceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence                     99999999999 9999999999999877 5788888865 7788999999999988999999999999999


Q ss_pred             CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          164 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       164 ~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      . +|+++.+++++.+.++++|+++++++.+   .++.+.+++.+++ ++|++|||.++...+..++++|+++ |+++.++
T Consensus       184 ~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g  258 (337)
T cd08261         184 A-RVIVVDIDDERLEFARELGADDTINVGD---EDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVG  258 (337)
T ss_pred             C-eEEEECCCHHHHHHHHHhCCCEEecCcc---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEc
Confidence            9 8999999999999999999999999887   6788888888877 8999999998876688999999998 9999998


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc-e-eEE
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-C-LRC  320 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~-~-~k~  320 (326)
                      ...  ....++...+..+++++.++..   ...+.++.++++++++.+++.+.+...+++++++++++.+.+++ . .|+
T Consensus       259 ~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~  333 (337)
T cd08261         259 LSK--GPVTFPDPEFHKKELTILGSRN---ATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKV  333 (337)
T ss_pred             CCC--CCCccCHHHHHhCCCEEEEecc---CChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEE
Confidence            653  2334455555667788777632   23457889999999998876334668999999999999999873 5 499


Q ss_pred             EEEe
Q 020435          321 VIWM  324 (326)
Q Consensus       321 vv~~  324 (326)
                      ++++
T Consensus       334 v~~~  337 (337)
T cd08261         334 LIEF  337 (337)
T ss_pred             EEeC
Confidence            9875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=3.9e-35  Score=268.86  Aligned_cols=287  Identities=28%  Similarity=0.429  Sum_probs=241.9

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|+|++|+|+++|++++.+++||+|++.++..|+.|.+|..+..++|....+   .|....|            
T Consensus        51 ~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g------------  115 (343)
T cd08235          51 LKPPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYDG------------  115 (343)
T ss_pred             CCCCcccccceEEEEEeeCCCCCCCCCCCEEEEccCCCCCCChHHHCcCcccCCCcce---eccCCCC------------
Confidence            4568899999999999999999999999999999999999999999999999976654   4444445            


Q ss_pred             ccccccccccceEEecccc-----eEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAH-----VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~-----~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                             +|++|+.++++.     ++++|+++++++++++ +++.+||+++. ..+++++++|||+|+|.+|++++|+|+
T Consensus       116 -------~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~  186 (343)
T cd08235         116 -------GFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAK  186 (343)
T ss_pred             -------cceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHH
Confidence                   999999999998     9999999999999876 68899999874 458999999999988999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      ..|...|+++++++++.+.++++|+++++++++   .++.+.+++.+++ ++|++|||.++.......+++++++ |+++
T Consensus       187 ~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v  262 (343)
T cd08235         187 ASGARKVIVSDLNEFRLEFAKKLGADYTIDAAE---EDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRIL  262 (343)
T ss_pred             HcCCcEEEEECCCHHHHHHHHHhCCcEEecCCc---cCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEE
Confidence            999933999999999999988999999998887   7888888888877 8999999999776588999999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeE
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLR  319 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k  319 (326)
                      .++.........++...+..+++.+.++....   .+.++.++++++++.+++.+.+...++++++.++++.+.+++..|
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k  339 (343)
T cd08235         263 FFGGLPKGSTVNIDPNLIHYREITITGSYAAS---PEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGKSLK  339 (343)
T ss_pred             EEeccCCCCCcccCHHHHhhCceEEEEEecCC---hhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCCcEE
Confidence            99864333334455555666788887765322   457889999999998765445668899999999999999888338


Q ss_pred             EEEE
Q 020435          320 CVIW  323 (326)
Q Consensus       320 ~vv~  323 (326)
                      +|++
T Consensus       340 ~vi~  343 (343)
T cd08235         340 IVIT  343 (343)
T ss_pred             EEeC
Confidence            8863

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.2e-35  Score=270.27  Aligned_cols=282  Identities=27%  Similarity=0.436  Sum_probs=236.2

Q ss_pred             CCCcccCCceeEEEEEecCCCC--CccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC--CCCCccccccCC
Q 020435            7 VFPRILGHEAIGVVESVGENVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP--RDQTSRFKDLRG   82 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~--~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~g~~~~~~~~~   82 (326)
                      .+|.++|||++|+|+++|+.++  +|++||+|+..+..+|+.|.+|+.+.++.|.....   +|+.  ..|         
T Consensus        61 ~~p~~~g~e~~G~v~~vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~g---------  128 (350)
T cd08256          61 KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQNNVNG---------  128 (350)
T ss_pred             CCCcccCcceeEEEEEeCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeeccCCCC---------
Confidence            5788999999999999999999  89999999999999999999999999999965432   3331  234         


Q ss_pred             cccccccccccccceEEeccc-ceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           83 ETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        83 ~~~~~~~~~g~~a~~~~v~~~-~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                                +|++|+.++++ .++++|+++++++++++ .+++|+|+++ +.++++++++|+|.|+|++|++++++|++
T Consensus       129 ----------~~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~  196 (350)
T cd08256         129 ----------GMAEYMRFPKEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARL  196 (350)
T ss_pred             ----------cceeeEEcccccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence                      99999999988 57899999999999988 7999999986 77899999999997779999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEE
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  240 (326)
                      +|+..++++++++++.+.++++|++++++..+   .++.+.+.+++++ ++|++|||.+....+..++++++++ |+++.
T Consensus       197 ~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~  272 (350)
T cd08256         197 KNPKKLIVLDLKDERLALARKFGADVVLNPPE---VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVE  272 (350)
T ss_pred             cCCcEEEEEcCCHHHHHHHHHcCCcEEecCCC---cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEE
Confidence            99856888888999999999999999998876   7788888888887 9999999999765588999999998 99999


Q ss_pred             eccCCCCCcccccHHHH-HhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-
Q 020435          241 LGVDQPGSQLSLSSFEV-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-  318 (326)
Q Consensus       241 ~g~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-  318 (326)
                      +|....  ...+....+ ..+++++.++...    ...+.+++++++++.+++.+.+.+.|+++++++|++.+++++.. 
T Consensus       273 ~g~~~~--~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~  346 (350)
T cd08256         273 FSVFGD--PVTVDWSIIGDRKELDVLGSHLG----PYCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSI  346 (350)
T ss_pred             EccCCC--CCccChhHhhcccccEEEEeccC----chhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCce
Confidence            986432  233333332 2456777776533    24688999999999887655467999999999999999987755 


Q ss_pred             EEEE
Q 020435          319 RCVI  322 (326)
Q Consensus       319 k~vv  322 (326)
                      |+++
T Consensus       347 kvv~  350 (350)
T cd08256         347 KVVL  350 (350)
T ss_pred             EEeC
Confidence            7764

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=6e-35  Score=267.71  Aligned_cols=282  Identities=29%  Similarity=0.487  Sum_probs=236.5

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCccccccCCccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETI   85 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~   85 (326)
                      .+|.++|+|++|+|+++|++++++++||+|++.+..+|+.|.+|+.+++++|....+   .+. ...|            
T Consensus        53 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g------------  117 (343)
T cd05285          53 KEPMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRF---AATPPVDG------------  117 (343)
T ss_pred             CCCcccCcceeEEEEeeCCCCCCCCCCCEEEEccccCCCCChhHhCcCcccCcCccc---cccccCCC------------
Confidence            467899999999999999999999999999999999999999999999999975432   111 1234            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                             +|++|++++++.++++|+++++++++.+ .++++|++++ +.++++++++|||+|+|++|++++|+|+.+|+.
T Consensus       118 -------~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~  188 (343)
T cd05285         118 -------TLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGAT  188 (343)
T ss_pred             -------ceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence                   9999999999999999999999999877 5889999975 889999999999998899999999999999993


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccH---HHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSV---SQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~---~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .|+++++++++.+.++++|++++++.++   .++   .+.+++.+++ ++|++|||.+....++..+++++++ |+++.+
T Consensus       189 ~v~~~~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~  264 (343)
T cd05285         189 KVVVTDIDPSRLEFAKELGATHTVNVRT---EDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLV  264 (343)
T ss_pred             EEEEECCCHHHHHHHHHcCCcEEecccc---ccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEE
Confidence            4999998999999999999999998876   453   7778888777 8999999999875588999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc--eeE
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLR  319 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~--~~k  319 (326)
                      |....  ...+++.....+++.+.++...    .+.++.++++++++.+.+.+.+.+.|+++++.+|++.+.+++  .+|
T Consensus       265 g~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k  338 (343)
T cd05285         265 GMGKP--EVTLPLSAASLREIDIRGVFRY----ANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIK  338 (343)
T ss_pred             ccCCC--CCccCHHHHhhCCcEEEEeccC----hHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeE
Confidence            86432  2344444556677887776422    257889999999997765555678999999999999998875  369


Q ss_pred             EEE
Q 020435          320 CVI  322 (326)
Q Consensus       320 ~vv  322 (326)
                      ++|
T Consensus       339 ~~~  341 (343)
T cd05285         339 VVI  341 (343)
T ss_pred             EEE
Confidence            987

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=8.3e-35  Score=266.56  Aligned_cols=285  Identities=24%  Similarity=0.379  Sum_probs=236.1

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|++++++++||+|++.+..+|+.|.+|+.+++++|.+...   .+...+|             
T Consensus        56 ~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------  119 (341)
T PRK05396         56 PVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRPG-------------  119 (341)
T ss_pred             CCCcccceeeEEEEEEeCCCCCcCCCCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCCC-------------
Confidence            468899999999999999999999999999999999999999999999999976543   3444445             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  166 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~  166 (326)
                            +|++|+.++.+.++++|+++++++++.+ .++.++++++..  ...+|++|+|+|+|++|++++|+|++.|+.+
T Consensus       120 ------~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~  190 (341)
T PRK05396        120 ------AFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARH  190 (341)
T ss_pred             ------cceeeEEechHHeEECcCCCCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCE
Confidence                  9999999999999999999999888755 466777665543  3458999999988999999999999999856


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+++++++++.+.++++|++++++..+   .++.+.+++++.+ ++|++|||.++...+..++++++++ |+++.+|...
T Consensus       191 v~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~  266 (341)
T PRK05396        191 VVITDVNEYRLELARKMGATRAVNVAK---EDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPP  266 (341)
T ss_pred             EEEEcCCHHHHHHHHHhCCcEEecCcc---ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC
Confidence            888888899999999999999998877   6788888888876 9999999999877789999999998 9999998754


Q ss_pred             CCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEeC
Q 020435          246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  325 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~~  325 (326)
                      .  ..+++...+..+++++.++....  ..+.+..++++++++ +++.+.+.+.++++++++|++.+.+++..|++++++
T Consensus       267 ~--~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~~  341 (341)
T PRK05396        267 G--DMAIDWNKVIFKGLTIKGIYGRE--MFETWYKMSALLQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDWD  341 (341)
T ss_pred             C--CCcccHHHHhhcceEEEEEEccC--ccchHHHHHHHHHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEecC
Confidence            2  23334456667788888765221  134567788899888 545555778999999999999998877459999875

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7.9e-35  Score=269.34  Aligned_cols=308  Identities=31%  Similarity=0.483  Sum_probs=245.8

Q ss_pred             CCCcccCCceeEEEEEecCCCCC---ccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCC-CCCCCCccccccCC
Q 020435            7 VFPRILGHEAIGVVESVGENVDG---VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW-MPRDQTSRFKDLRG   82 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~---~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~g~~~~~~~~~   82 (326)
                      .+|.++|||++|+|+.+|++++.   +++||+|++.+..+|+.|.+|..+.+++|.....+...+ -..+|.+.+....+
T Consensus        52 ~~p~~~g~e~~G~v~~vG~~~~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (367)
T cd08263          52 PPPFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDG  131 (367)
T ss_pred             CCCcccccccceEEEEeCCCCCCCCcCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCC
Confidence            56889999999999999999988   999999999999999999999999999997654321111 01111000000000


Q ss_pred             cccccc-cccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           83 ETIHHF-VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        83 ~~~~~~-~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                        -+.+ ...|++++|+.++.+.++++|+++++++++.+++.++|||+++.....+.++++|||+|+|++|++++++|+.
T Consensus       132 --~~~~~~~~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~  209 (367)
T cd08263         132 --GPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKA  209 (367)
T ss_pred             --CccccccCCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHH
Confidence              0000 1135999999999999999999999999999999999999988787888999999999889999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEE
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  240 (326)
                      .|+.+|++++.++++.+.++++|++.+++.++   .++.+.+++..++ ++|++|||+++......++++++++ |+++.
T Consensus       210 ~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~  285 (367)
T cd08263         210 FGASPIIAVDVRDEKLAKAKELGATHTVNAAK---EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVV  285 (367)
T ss_pred             cCCCeEEEEeCCHHHHHHHHHhCCceEecCCc---ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEE
Confidence            99844999988999999999999999999877   7788888888776 9999999999874488999999998 99999


Q ss_pred             eccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-E
Q 020435          241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-R  319 (326)
Q Consensus       241 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k  319 (326)
                      ++.........++...++.++.++.+++...  .++.++.++++++++.+.+...+++.++++++.++++.+++++.. |
T Consensus       286 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~  363 (367)
T cd08263         286 VGLAPGGATAEIPITRLVRRGIKIIGSYGAR--PRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGR  363 (367)
T ss_pred             EccCCCCCccccCHHHHhhCCeEEEecCCCC--cHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccce
Confidence            9865332334455555556788887754222  135688899999999887655567899999999999999988755 8


Q ss_pred             EEE
Q 020435          320 CVI  322 (326)
Q Consensus       320 ~vv  322 (326)
                      +||
T Consensus       364 ~~~  366 (367)
T cd08263         364 AIV  366 (367)
T ss_pred             eee
Confidence            876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=8.4e-35  Score=271.86  Aligned_cols=285  Identities=21%  Similarity=0.236  Sum_probs=237.3

Q ss_pred             cccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCcccccc
Q 020435           10 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHF   88 (326)
Q Consensus        10 ~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~   88 (326)
                      .++|||++|+|+++|++++.+++||+|++.+...|+.|.+|+.+++++|.....   +|+. .+                
T Consensus        79 ~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~----------------  139 (398)
T TIGR01751        79 HIIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETNF----------------  139 (398)
T ss_pred             eecccceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCCC----------------
Confidence            389999999999999999999999999999999999999999999999965442   3321 23                


Q ss_pred             cccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhh--hcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCC
Q 020435           89 VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT  165 (326)
Q Consensus        89 ~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~--~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~  165 (326)
                         |+|+||++++++.++++|+++++++++.+.+.+.|||+++..  .+++.++++|+|+|+ |++|++++++|+++|+ 
T Consensus       140 ---g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-  215 (398)
T TIGR01751       140 ---GSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-  215 (398)
T ss_pred             ---ccceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-
Confidence               499999999999999999999999999999999999998654  477889999999997 9999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCC-------------------CccHHHHHHHhcCC-CccEEEEcCCcHHHHH
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCG-------------------DKSVSQIIIDMTDG-GADYCFECVGLASLVQ  225 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~-------------------~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~  225 (326)
                      +++++++++++.+.++++|+++++|.++..                   ...+.+.+.+++++ ++|++|||.|... +.
T Consensus       216 ~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~-~~  294 (398)
T TIGR01751       216 NPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRAT-FP  294 (398)
T ss_pred             eEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHH-HH
Confidence            888888899999999999999999875410                   01255667778876 9999999999765 88


Q ss_pred             HHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccH
Q 020435          226 EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI  305 (326)
Q Consensus       226 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i  305 (326)
                      ..+++++++ |+++.+|.... ....++...++.++.++.++..+.   ..++++++++++++.+..  .++++++++++
T Consensus       295 ~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~--~~~~~~~l~~~  367 (398)
T TIGR01751       295 TSVFVCRRG-GMVVICGGTTG-YNHDYDNRYLWMRQKRIQGSHFAN---LREAWEANRLVAKGRIDP--TLSKVYPLEEI  367 (398)
T ss_pred             HHHHhhccC-CEEEEEccccC-CCCCcCHHHHhhcccEEEccccCc---HHHHHHHHHHHHCCCccc--ceeeEEcHHHH
Confidence            999999998 99999987532 224455555666677787775433   245788999999997764  36789999999


Q ss_pred             HHHHHHHHcCcee-EEEEEeC
Q 020435          306 NSAFDLLIKGKCL-RCVIWMG  325 (326)
Q Consensus       306 ~~a~~~~~~~~~~-k~vv~~~  325 (326)
                      +++++.+.+++.. |+++.+.
T Consensus       368 ~~a~~~~~~~~~~gkvvv~~~  388 (398)
T TIGR01751       368 GQAHQDVHRNHHQGNVAVLVL  388 (398)
T ss_pred             HHHHHHHHcCCCCceEEEEeC
Confidence            9999999988765 9998864

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=1e-34  Score=266.83  Aligned_cols=285  Identities=26%  Similarity=0.354  Sum_probs=240.6

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|++++++++||+|++.+...|+.|.+|..++++.|....+   .|....|             
T Consensus        65 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------  128 (350)
T cd08240          65 KLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIFQDG-------------  128 (350)
T ss_pred             CCCcccccceeEEEEeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeeeccC-------------
Confidence            457899999999999999999999999999999999999999999999999977654   3433444             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  166 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~  166 (326)
                            ++++|+.++.+.++++|+++++++++++.+.+.|||+++.......++++|||+|+|++|++++|+|+..|+++
T Consensus       129 ------~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~  202 (350)
T cd08240         129 ------GYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPAN  202 (350)
T ss_pred             ------cceeeEEecHHHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCe
Confidence                  99999999999999999999999999999999999998776666678999999988999999999999999967


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  246 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  246 (326)
                      |+++++++++.+.++++|++.+++.++   .++.+.+.+..++++|++||+.|.......++++|+++ |+++.++....
T Consensus       203 v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~  278 (350)
T cd08240         203 IIVVDIDEAKLEAAKAAGADVVVNGSD---PDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGG  278 (350)
T ss_pred             EEEEeCCHHHHHHHHHhCCcEEecCCC---ccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCC
Confidence            889998999999999999988888776   66777777776558999999999766689999999998 99999987543


Q ss_pred             CCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEEEEe
Q 020435          247 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  324 (326)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~vv~~  324 (326)
                      .  ..........+++++.++....   .+++.+++++++++.++..  ....|+++++++|++.+..++.. |+++++
T Consensus       279 ~--~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~ll~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  350 (350)
T cd08240         279 E--ATLPLPLLPLRALTIQGSYVGS---LEELRELVALAKAGKLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLKP  350 (350)
T ss_pred             C--CcccHHHHhhcCcEEEEcccCC---HHHHHHHHHHHHcCCCccc--eeeEEcHHHHHHHHHHHHcCCccceEEecC
Confidence            2  2233333445788888876443   3678899999999977643  45789999999999999887765 888753

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=4.4e-35  Score=268.82  Aligned_cols=260  Identities=20%  Similarity=0.268  Sum_probs=215.6

Q ss_pred             CCCcccCC--ceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            7 VFPRILGH--EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         7 ~~p~i~G~--e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      .+|.++|+  |++|+|..+|+++++|++||+|...                                             
T Consensus        71 ~~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~~---------------------------------------------  105 (348)
T PLN03154         71 LPPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISGI---------------------------------------------  105 (348)
T ss_pred             CCCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEec---------------------------------------------
Confidence            46899998  8899999999999999999999531                                             


Q ss_pred             cccccccccccceEEecccc--eEE--cCCCCCcc-ccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHH
Q 020435           85 IHHFVSVSSFSEYTVLDIAH--VVK--VDPTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEG  158 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~--~~~--ip~~~s~~-~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~l  158 (326)
                             |+|+||+.++.+.  +.+  +|++++++ +++++++++.|||+++.+.+++++|++|||+|+ |++|++++|+
T Consensus       106 -------~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiql  178 (348)
T PLN03154        106 -------TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQL  178 (348)
T ss_pred             -------CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHH
Confidence                   2899999998753  544  59999986 688899999999998888889999999999997 9999999999


Q ss_pred             HHHcCCCEEEEEcCChhHHHHHH-hcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcE
Q 020435          159 ARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK  237 (326)
Q Consensus       159 a~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~  237 (326)
                      ||++|+ +|+++++++++.+.++ ++|+++++++.+  ..++.+.+++.+++++|++|||+|+.. +..++++++++ |+
T Consensus       179 Ak~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~~gvD~v~d~vG~~~-~~~~~~~l~~~-G~  253 (348)
T PLN03154        179 AKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNYKE--EPDLDAALKRYFPEGIDIYFDNVGGDM-LDAALLNMKIH-GR  253 (348)
T ss_pred             HHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEECCC--cccHHHHHHHHCCCCcEEEEECCCHHH-HHHHHHHhccC-CE
Confidence            999999 8999999999999987 799999999864  136777888877669999999999865 89999999998 99


Q ss_pred             EEEeccCCCCCc----ccccHHHHHhcCCEEEeeeccCCC--CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHH
Q 020435          238 TIVLGVDQPGSQ----LSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL  311 (326)
Q Consensus       238 ~v~~g~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~  311 (326)
                      ++.+|.......    ..++...++.+++++.+++...+.  ..+.++++++++++|++++.  ++.+|+++++++|++.
T Consensus       254 iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~--~~~~~~L~~~~~A~~~  331 (348)
T PLN03154        254 IAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYI--EDMSEGLESAPAALVG  331 (348)
T ss_pred             EEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCc--eecccCHHHHHHHHHH
Confidence            999997532211    112445667789999988644321  12357789999999977643  6678999999999999


Q ss_pred             HHcCcee-EEEEEeC
Q 020435          312 LIKGKCL-RCVIWMG  325 (326)
Q Consensus       312 ~~~~~~~-k~vv~~~  325 (326)
                      +.+++.. |+||++.
T Consensus       332 l~~g~~~GKvVl~~~  346 (348)
T PLN03154        332 LFSGKNVGKQVIRVA  346 (348)
T ss_pred             HHcCCCCceEEEEec
Confidence            9998876 9999875

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=1.7e-34  Score=264.83  Aligned_cols=286  Identities=28%  Similarity=0.419  Sum_probs=238.8

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|++++++++||+|++.+..+|+.|.+|..++.+.|....+   ++...+|             
T Consensus        52 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------  115 (345)
T cd08287          52 RAPAPIGHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------  115 (345)
T ss_pred             CCCcccccceEEEEEEeCCCCCccCCCCEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------
Confidence            358899999999999999999999999999886778899999999999999987654   5555556             


Q ss_pred             cccccccccceEEeccc--ceEEcCCCCCccccc-----cccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHH
Q 020435           87 HFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRAC-----LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~--~~~~ip~~~s~~~aa-----~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la  159 (326)
                            +|++|+.++.+  .++++|++++++.+.     ++.+.++|||+++ ..++++++++|+|+|+|++|++++|+|
T Consensus       116 ------~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~la  188 (345)
T cd08287         116 ------GQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAA  188 (345)
T ss_pred             ------ceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHH
Confidence                  99999999875  999999999983222     2235788999975 567899999999998899999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      ++.|+..++++++++++.+.++++|+++++++..   .++.+.+.+.+++ ++|+++||.++...+..++++++++ |++
T Consensus       189 k~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~---~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~  264 (345)
T cd08287         189 KRLGAERIIAMSRHEDRQALAREFGATDIVAERG---EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRV  264 (345)
T ss_pred             HHcCCCEEEEECCCHHHHHHHHHcCCceEecCCc---ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEE
Confidence            9999855889988888888999999999999887   7788888888877 9999999999877789999999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      +.++....  ...++....+.+++++.++...   ..+.+++++++++++.+++..++++.++++++++|++.+.+.+..
T Consensus       265 v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~  339 (345)
T cd08287         265 GYVGVPHG--GVELDVRELFFRNVGLAGGPAP---VRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAI  339 (345)
T ss_pred             EEecccCC--CCccCHHHHHhcceEEEEecCC---cHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCce
Confidence            99986542  3445554456678888775322   235789999999999887665567899999999999999887777


Q ss_pred             EEEEEe
Q 020435          319 RCVIWM  324 (326)
Q Consensus       319 k~vv~~  324 (326)
                      |++|++
T Consensus       340 k~~~~~  345 (345)
T cd08287         340 KVLLRP  345 (345)
T ss_pred             EEEeCC
Confidence            999863

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=1.9e-34  Score=264.41  Aligned_cols=289  Identities=28%  Similarity=0.395  Sum_probs=237.2

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|++++++++||+|++.+..+|+.|.+|..++++.|.....   .|..  +             
T Consensus        52 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~-------------  113 (344)
T cd08284          52 TPGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYA--G-------------  113 (344)
T ss_pred             CCCcccccceEEEEEeeCCCccccCCCCEEEEcccCCCCCChHHhCcCcccCCCCcc---cccc--c-------------
Confidence            457899999999999999999999999999998889999999999999999976542   2110  0             


Q ss_pred             cccccccccceEEeccc--ceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 020435           87 HFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  164 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~--~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~  164 (326)
                      .....|+|++|+.++++  .++++|+++++++++++++.++|||+++. ..++.++++|||+|+|.+|++++++|+..|+
T Consensus       114 ~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~  192 (344)
T cd08284         114 SPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGA  192 (344)
T ss_pred             cCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            00112499999999865  99999999999999999999999999864 4788999999999889999999999999996


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+|+++++++++.+.++++|+. .++.+.   .++.+.+.+++++ ++|++|||.++.......+++++++ |+++.+|.
T Consensus       193 ~~v~~~~~~~~~~~~~~~~g~~-~~~~~~---~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~  267 (344)
T cd08284         193 ARVFAVDPVPERLERAAALGAE-PINFED---AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGV  267 (344)
T ss_pred             ceEEEEcCCHHHHHHHHHhCCe-EEecCC---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECc
Confidence            4799998888899888999975 466655   5678888888876 9999999999876689999999998 99999987


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEE
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  323 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~  323 (326)
                      ... ..........+.+++++....   ....+.++.++++++++.+++..++++.+++++++++++.+.+++..|++++
T Consensus       268 ~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~  343 (344)
T cd08284         268 HTA-EEFPFPGLDAYNKNLTLRFGR---CPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD  343 (344)
T ss_pred             CCC-CCccccHHHHhhcCcEEEEec---CCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEec
Confidence            542 233344445566788776542   1235679999999999988765556789999999999999887665788875

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=2.1e-34  Score=263.11  Aligned_cols=283  Identities=31%  Similarity=0.486  Sum_probs=242.9

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|+|++|+|+++|++++.+++||+|++.+..+|+.|.+|+.++.++|.....   .|+..+|            
T Consensus        54 ~~~~~~~g~~~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g------------  118 (338)
T cd08254          54 TKLPLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGIDG------------  118 (338)
T ss_pred             CCCCEeccccccEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccCC------------
Confidence            3568899999999999999999999999999999999999999999999999966543   4555555            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                             +|++|+.++.+.++++|+++++++++.++.+++|||+++....+++++++|||.|+|.+|++++++|+..|+ 
T Consensus       119 -------~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-  190 (338)
T cd08254         119 -------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-  190 (338)
T ss_pred             -------cceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-
Confidence                   999999999999999999999999999999999999988888889999999998889999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +|+++++++++.+.++++|++++++..+   ....+.+ +.+.+ ++|+++||.+....+..++++|+++ |+++.++..
T Consensus       191 ~V~~~~~s~~~~~~~~~~g~~~~~~~~~---~~~~~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~  265 (338)
T cd08254         191 AVIAVDIKEEKLELAKELGADEVLNSLD---DSPKDKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLG  265 (338)
T ss_pred             EEEEEcCCHHHHHHHHHhCCCEEEcCCC---cCHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCC
Confidence            8999999999999999999999888776   5566666 55555 9999999998776689999999998 999999864


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEEEE
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  323 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~vv~  323 (326)
                      .  ....++...++.++.++.+++..   ..+.+..++++++++.+++.   .+.+++++++++++.+.+++.. |++++
T Consensus       266 ~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~  337 (338)
T cd08254         266 R--DKLTVDLSDLIARELRIIGSFGG---TPEDLPEVLDLIAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLV  337 (338)
T ss_pred             C--CCCccCHHHHhhCccEEEEeccC---CHHHHHHHHHHHHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEe
Confidence            3  23445556667778888876532   24578889999999987754   3789999999999999988776 98886


Q ss_pred             e
Q 020435          324 M  324 (326)
Q Consensus       324 ~  324 (326)
                      +
T Consensus       338 ~  338 (338)
T cd08254         338 P  338 (338)
T ss_pred             C
Confidence            4

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=2.5e-34  Score=265.65  Aligned_cols=285  Identities=27%  Similarity=0.457  Sum_probs=231.9

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETI   85 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~   85 (326)
                      .+|.++|||++|+|+++|+++++|++||+|++.+..+|+.|..|+.+.++.|.....   ++.. .+|            
T Consensus        72 ~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~g------------  136 (364)
T PLN02702         72 KEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVHG------------  136 (364)
T ss_pred             CCCcccccceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCCC------------
Confidence            368899999999999999999999999999999999999999999999999976432   2211 234            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                             +|+||++++...++++|++++++++++.. +++++|+++ +..++.++++|||+|+|++|++++++|++.|+.
T Consensus       137 -------~~~~y~~v~~~~~~~~P~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~  207 (364)
T PLN02702        137 -------SLANQVVHPADLCFKLPENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAP  207 (364)
T ss_pred             -------cccceEEcchHHeEECCCCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence                   99999999999999999999999887632 566688865 778899999999998899999999999999986


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHh---cCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM---TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~---~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .|+++++++++.+.++++|++++++... ...++.+.+.++   +++++|++|||.++...+..++++++++ |+++.+|
T Consensus       208 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g  285 (364)
T PLN02702        208 RIVIVDVDDERLSVAKQLGADEIVLVST-NIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVG  285 (364)
T ss_pred             EEEEECCCHHHHHHHHHhCCCEEEecCc-ccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEc
Confidence            6888888889999999999988876532 114566666554   2338999999999766689999999998 9999998


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeecc--ccHHHHHHHHHcCcee-E
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF--EEINSAFDLLIKGKCL-R  319 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l--~~i~~a~~~~~~~~~~-k  319 (326)
                      ....  ...+....+..+++++.+++..    ..+++.++++++++.+++.+.+++.|++  +++++|++.+.+++.. |
T Consensus       286 ~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~k  359 (364)
T PLN02702        286 MGHN--EMTVPLTPAAAREVDVVGVFRY----RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIK  359 (364)
T ss_pred             cCCC--CCcccHHHHHhCccEEEEeccC----hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceE
Confidence            6432  2344555667788998887532    3578889999999988766567788555  7999999999887654 9


Q ss_pred             EEEE
Q 020435          320 CVIW  323 (326)
Q Consensus       320 ~vv~  323 (326)
                      +++.
T Consensus       360 vv~~  363 (364)
T PLN02702        360 VMFN  363 (364)
T ss_pred             EEEe
Confidence            9885

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=3.3e-35  Score=265.34  Aligned_cols=251  Identities=18%  Similarity=0.209  Sum_probs=196.6

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|+++|||++|+|+++|+++ .|++||||++.    |..|.+|..               +  ..              
T Consensus        57 ~~P~i~GhE~~G~V~~vG~~v-~~~vGdrV~~~----~~~c~~~~~---------------~--~~--------------  100 (308)
T TIGR01202        57 GYPLVPGYESVGRVVEAGPDT-GFRPGDRVFVP----GSNCYEDVR---------------G--LF--------------  100 (308)
T ss_pred             CCCccCcceeEEEEEEecCCC-CCCCCCEEEEe----Ccccccccc---------------c--cC--------------
Confidence            579999999999999999998 69999999873    223333210               0  12              


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  166 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~  166 (326)
                           |+|+||+.++++.++++|++++++. ++++ +++|||+++.+ . ..++++|||+|+|++|++++|+||++|++.
T Consensus       101 -----G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~  171 (308)
T TIGR01202       101 -----GGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSP  171 (308)
T ss_pred             -----CcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCce
Confidence                 3999999999999999999999764 5554 57899997644 3 336889999999999999999999999955


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  246 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  246 (326)
                      |++++.++++++.++.+   +++|+.+   .         .+.++|+||||+|++..+..++++++++ |+++++|... 
T Consensus       172 v~~~~~~~~rl~~a~~~---~~i~~~~---~---------~~~g~Dvvid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~-  234 (308)
T TIGR01202       172 PAVWETNPRRRDGATGY---EVLDPEK---D---------PRRDYRAIYDASGDPSLIDTLVRRLAKG-GEIVLAGFYT-  234 (308)
T ss_pred             EEEeCCCHHHHHhhhhc---cccChhh---c---------cCCCCCEEEECCCCHHHHHHHHHhhhcC-cEEEEEeecC-
Confidence            66777776676655443   4555432   1         1238999999999987789999999998 9999999753 


Q ss_pred             CCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce-eEEEEE
Q 020435          247 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  323 (326)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~-~k~vv~  323 (326)
                       ....+++..++.|++++.++...   ..++++++++++++|++++++++++.|+++++++|++.+.++.. +|++|+
T Consensus       235 -~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       235 -EPVNFDFVPAFMKEARLRIAAEW---QPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             -CCcccccchhhhcceEEEEeccc---chhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence             23455555667788888877532   24679999999999999988889999999999999998876544 598874

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2.1e-34  Score=263.53  Aligned_cols=287  Identities=23%  Similarity=0.371  Sum_probs=233.6

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEe-ecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCC
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG   82 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~   82 (326)
                      +...+|.++|||++|+|+++|+++++|++||+|+ ......|++|.+|+.+++++|...... ..|              
T Consensus        49 ~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------  113 (337)
T cd05283          49 GPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVT-YNG--------------  113 (337)
T ss_pred             CCCCCCcccCcceeeEEEEECCCCcccCCCCEEEEecCCCCCCCCccccCCchhcCcchhhc-ccc--------------
Confidence            3445699999999999999999999999999997 445568999999999999999775431 001              


Q ss_pred             cccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHc
Q 020435           83 ETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLC  162 (326)
Q Consensus        83 ~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~  162 (326)
                      ++.-++...|+|+||++++.+.++++|+++++++++.+.+.+.|||+++ ...+++++++++|.|+|++|++++++|+..
T Consensus       114 ~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~  192 (337)
T cd05283         114 KYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKAL  192 (337)
T ss_pred             cccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHc
Confidence            0001112234999999999999999999999999999999999999975 445689999999988899999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      |+ +|+.+++++++.+.++++|++++++..+   .++.+.    .++++|++|||++.......++++++++ |+++.+|
T Consensus       193 G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~----~~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g  263 (337)
T cd05283         193 GA-EVTAFSRSPSKKEDALKLGADEFIATKD---PEAMKK----AAGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVG  263 (337)
T ss_pred             CC-eEEEEcCCHHHHHHHHHcCCcEEecCcc---hhhhhh----ccCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEe
Confidence            99 9999999999999999999999988765   333221    2348999999999875588999999998 9999998


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEE
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCV  321 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~v  321 (326)
                      ....  ...++...++.+++++.++....   .++++.++++++++++++  .+ +.|+++++++||+.+.+++.. |+|
T Consensus       264 ~~~~--~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~~k~v  335 (337)
T cd05283         264 APEE--PLPVPPFPLIFGRKSVAGSLIGG---RKETQEMLDFAAEHGIKP--WV-EVIPMDGINEALERLEKGDVRYRFV  335 (337)
T ss_pred             ccCC--CCccCHHHHhcCceEEEEecccC---HHHHHHHHHHHHhCCCcc--ce-EEEEHHHHHHHHHHHHcCCCcceEe
Confidence            7532  22556666667899999886543   467999999999997654  34 789999999999999998875 888


Q ss_pred             EE
Q 020435          322 IW  323 (326)
Q Consensus       322 v~  323 (326)
                      ++
T Consensus       336 ~~  337 (337)
T cd05283         336 LD  337 (337)
T ss_pred             eC
Confidence            74

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=3.1e-34  Score=262.45  Aligned_cols=280  Identities=25%  Similarity=0.399  Sum_probs=229.9

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCC-----CCCCCccccccC
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-----PRDQTSRFKDLR   81 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~g~~~~~~~~   81 (326)
                      .+|.++|||++|+|+++|+++++|++||+|++.+..+|++|.+|..++.++|....+   ++.     ..+|        
T Consensus        52 ~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~g--------  120 (339)
T cd08232          52 REPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRFPHVQG--------  120 (339)
T ss_pred             cCCeecCccceEEEEeeCCCCCcCCCCCEEEEccCCcCCCChHHhCcCcccCccccc---eeeccccCCCCC--------
Confidence            467899999999999999999999999999999999999999999999999987543   221     1234        


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                                 +|++|++++.+.++++|+++++++|+. ..+++|||+++.+.... ++++|||.|+|.+|++++|+|+.
T Consensus       121 -----------~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~  187 (339)
T cd08232         121 -----------GFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARR  187 (339)
T ss_pred             -----------ceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHH
Confidence                       999999999999999999999999876 46888999987665556 89999999889999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhc-CC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT-DG-GADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~-~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      +|..+|+++++++++.+.++++|++++++.++   .++    .+.. .. ++|++|||.+....+...+++|+++ |+++
T Consensus       188 ~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~---~~~----~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v  259 (339)
T cd08232         188 AGAAEIVATDLADAPLAVARAMGADETVNLAR---DPL----AAYAADKGDFDVVFEASGAPAALASALRVVRPG-GTVV  259 (339)
T ss_pred             cCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc---hhh----hhhhccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEE
Confidence            99867899998889888889999999998765   332    2222 23 7999999999765588999999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-  318 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-  318 (326)
                      .++...  .....++..++.+++++.+...    ..+++++++++++++.+++...+++.|++++++++++.+..++.. 
T Consensus       260 ~~g~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~g  333 (339)
T cd08232         260 QVGMLG--GPVPLPLNALVAKELDLRGSFR----FDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSV  333 (339)
T ss_pred             EEecCC--CCccCcHHHHhhcceEEEEEec----CHHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCce
Confidence            998543  2233344444567788877642    235788999999999887666677899999999999999877655 


Q ss_pred             EEEEEe
Q 020435          319 RCVIWM  324 (326)
Q Consensus       319 k~vv~~  324 (326)
                      |+++++
T Consensus       334 kvvv~~  339 (339)
T cd08232         334 KVQLSF  339 (339)
T ss_pred             eEEEeC
Confidence            999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=7.1e-34  Score=263.61  Aligned_cols=293  Identities=25%  Similarity=0.347  Sum_probs=235.5

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|++++.+++||+|++.++.+|+.|..|+.+++++|....    .++....            .
T Consensus        52 ~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~----~~~~~~~------------~  115 (375)
T cd08282          52 EPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVN----PGRAGGA------------Y  115 (375)
T ss_pred             CCCceeccccEEEEEEeCCCCCcCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCC----ccccccc------------c
Confidence            46899999999999999999999999999999999999999999999999997532    1110000            0


Q ss_pred             ccc----ccccccceEEeccc--ceEEcCCCCCcc---ccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHH
Q 020435           87 HFV----SVSSFSEYTVLDIA--HVVKVDPTVPPN---RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAE  157 (326)
Q Consensus        87 ~~~----~~g~~a~~~~v~~~--~~~~ip~~~s~~---~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~  157 (326)
                      +++    ..|+|+||++++..  .++++|++++++   .++.+...++|||+++ ..++++++++|+|+|+|++|++++|
T Consensus       116 ~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~  194 (375)
T cd08282         116 GYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAY  194 (375)
T ss_pred             cccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHH
Confidence            011    02499999999976  899999999998   5677888999999987 7889999999999988999999999


Q ss_pred             HHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHH-----------HHHH
Q 020435          158 GARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS-----------LVQE  226 (326)
Q Consensus       158 la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~-----------~~~~  226 (326)
                      +|++.|+.+|+++++++++.+.++++|+ ..+++.+   .++.+.+++++++++|++|||.+...           .+..
T Consensus       195 ~a~~~G~~~vi~~~~~~~~~~~~~~~g~-~~v~~~~---~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~  270 (375)
T cd08282         195 SAILRGASRVYVVDHVPERLDLAESIGA-IPIDFSD---GDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQ  270 (375)
T ss_pred             HHHHcCCCEEEEECCCHHHHHHHHHcCC-eEeccCc---ccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHH
Confidence            9999997578889999999999999998 4566665   67788888877668999999998762           3788


Q ss_pred             HHHHhhcCCcEEEEeccCCCC-----------CcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcc
Q 020435          227 AYACCRKGWGKTIVLGVDQPG-----------SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF  295 (326)
Q Consensus       227 ~~~~l~~~~G~~v~~g~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  295 (326)
                      ++++++++ |+++.+|.....           ....++...++.++..+.++..   ..++.+..++++++++++++..+
T Consensus       271 ~~~~l~~~-g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~  346 (375)
T cd08282         271 LIRVTRPG-GGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQA---PVKKYNRQLRDLILAGRAKPSFV  346 (375)
T ss_pred             HHHHhhcC-cEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEecC---CchhhHHHHHHHHHcCCCChHHc
Confidence            99999998 999988764311           1234455566666777666532   12456888999999998876555


Q ss_pred             eeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          296 VTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       296 i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                      +++.++++++++|++.+.+++..|+++++
T Consensus       347 ~~~~~~l~~~~~a~~~~~~~~~~kvvv~~  375 (375)
T cd08282         347 VSHVISLEDAPEAYARFDKRLETKVVIKP  375 (375)
T ss_pred             EEEEeeHHHHHHHHHHHhcCCceEEEeCC
Confidence            78999999999999999988844998753

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=1.1e-33  Score=258.83  Aligned_cols=282  Identities=27%  Similarity=0.423  Sum_probs=234.5

Q ss_pred             CCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            8 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         8 ~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .|.++|||++|+|+++|+++++|++||+|++.+. ..|+.|.+|..+.+++|.....   .|+..+|             
T Consensus        53 ~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------  116 (338)
T PRK09422         53 TGRILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------  116 (338)
T ss_pred             CCccCCcccceEEEEECCCCccCCCCCEEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------
Confidence            4789999999999999999999999999987554 5799999999999999987664   5555556             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH-cCCC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGAT  165 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~-~g~~  165 (326)
                            +++||+.++.+.++++|+++++++++++++.+.|||+++ +.++++++++|||+|+|++|++++++|+. .|+ 
T Consensus       117 ------~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-  188 (338)
T PRK09422        117 ------GMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-  188 (338)
T ss_pred             ------cceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-
Confidence                  999999999999999999999999999999999999986 77889999999999999999999999998 599 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      +|+++++++++.+.++++|++.+++...  ..++.+.+++.++ ++|.++.+.++...+..++++++++ |+++.+|...
T Consensus       189 ~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~  264 (338)
T PRK09422        189 KVIAVDINDDKLALAKEVGADLTINSKR--VEDVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPP  264 (338)
T ss_pred             eEEEEeCChHHHHHHHHcCCcEEecccc--cccHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCC
Confidence            8999999999999999999999988742  1456677777766 7896655555555599999999998 9999998642


Q ss_pred             CCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEEEEe
Q 020435          246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  324 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~vv~~  324 (326)
                        ....++...+..+..++.++....   .++++.++++++++.++.  .+ ..++++++++|++.+.+++.. |+++++
T Consensus       265 --~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gkvvv~~  336 (338)
T PRK09422        265 --ESMDLSIPRLVLDGIEVVGSLVGT---RQDLEEAFQFGAEGKVVP--KV-QLRPLEDINDIFDEMEQGKIQGRMVIDF  336 (338)
T ss_pred             --CCceecHHHHhhcCcEEEEecCCC---HHHHHHHHHHHHhCCCCc--cE-EEEcHHHHHHHHHHHHcCCccceEEEec
Confidence              234445555566778887765332   357889999999997653  35 568999999999999988776 998876


Q ss_pred             C
Q 020435          325 G  325 (326)
Q Consensus       325 ~  325 (326)
                      .
T Consensus       337 ~  337 (338)
T PRK09422        337 T  337 (338)
T ss_pred             C
Confidence            4

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=6.7e-34  Score=259.70  Aligned_cols=283  Identities=27%  Similarity=0.409  Sum_probs=234.2

Q ss_pred             CCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCC
Q 020435            3 DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG   82 (326)
Q Consensus         3 ~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~   82 (326)
                      +|..++|.++|||++|+|+.+|++++.+++||+|++.+..+|+.|.+|..++++.|.....   +|...+|         
T Consensus        49 ~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g---------  116 (334)
T PRK13771         49 YPRMKYPVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELDG---------  116 (334)
T ss_pred             CCCCCCCeeccccceEEEEEeCCCCccCCCCCEEEECCCCCCcCChhhcCCCcccCccccc---cccccCc---------
Confidence            4445678899999999999999999899999999998888999999999999999988664   4544455         


Q ss_pred             cccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHH
Q 020435           83 ETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARL  161 (326)
Q Consensus        83 ~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~  161 (326)
                                +|++|+.++.+.++++|+++++++++.+++.+.+||+++... +++++++|+|+|+ |.+|++++++|+.
T Consensus       117 ----------~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~  185 (334)
T PRK13771        117 ----------FFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKA  185 (334)
T ss_pred             ----------eeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHH
Confidence                      999999999999999999999999999999999999986554 8899999999987 9999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .|+ +|+++++++++.+.++++ ++++++.+     ++.+.++++  +++|++|||.++.. ...++++++++ |+++.+
T Consensus       186 ~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~v~~~--~~~d~~ld~~g~~~-~~~~~~~l~~~-G~~v~~  254 (334)
T PRK13771        186 LGA-KVIAVTSSESKAKIVSKY-ADYVIVGS-----KFSEEVKKI--GGADIVIETVGTPT-LEESLRSLNMG-GKIIQI  254 (334)
T ss_pred             cCC-EEEEEeCCHHHHHHHHHH-HHHhcCch-----hHHHHHHhc--CCCcEEEEcCChHH-HHHHHHHHhcC-CEEEEE
Confidence            999 899999999999988888 77666543     345556654  37999999999876 88999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EE
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RC  320 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~  320 (326)
                      |...............+.+++++.++..   ..+++++.++++++++.++.  .+.+.++++++++|++.+.++... |+
T Consensus       255 g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kv  329 (334)
T PRK13771        255 GNVDPSPTYSLRLGYIILKDIEIIGHIS---ATKRDVEEALKLVAEGKIKP--VIGAEVSLSEIDKALEELKDKSRIGKI  329 (334)
T ss_pred             eccCCCCCcccCHHHHHhcccEEEEecC---CCHHHHHHHHHHHHcCCCcc--eEeeeEcHHHHHHHHHHHHcCCCcceE
Confidence            9753322212333333456888887642   23567899999999997653  366899999999999999887655 88


Q ss_pred             EEEe
Q 020435          321 VIWM  324 (326)
Q Consensus       321 vv~~  324 (326)
                      ++.+
T Consensus       330 v~~~  333 (334)
T PRK13771        330 LVKP  333 (334)
T ss_pred             EEec
Confidence            8864

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.6e-33  Score=257.90  Aligned_cols=283  Identities=29%  Similarity=0.453  Sum_probs=242.7

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..|.++|||++|+|+++|++++.+++||+|+..+ ...|+.|.+|..+++++|.....   .|+...|            
T Consensus        55 ~~~~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g------------  119 (341)
T cd08297          55 KLPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVDG------------  119 (341)
T ss_pred             CCCccCCcccceEEEEeCCCCCCCCCCCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccCC------------
Confidence            4577899999999999999999999999998765 46799999999999999988765   5665556            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                             ++++|+.++++.++++|+++++++++.+++.+.|||+++.. .+++++++|||+|+ +.+|++++++|++.|+
T Consensus       120 -------~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~  191 (341)
T cd08297         120 -------TFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL  191 (341)
T ss_pred             -------cceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC
Confidence                   99999999999999999999999999999999999997655 58999999999987 6799999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +|+++.+++++.+.++++|+++++++.+   .++.+.+.+.+++ ++|++|||.++......++++++++ |+++.+|.
T Consensus       192 -~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~  266 (341)
T cd08297         192 -RVIAIDVGDEKLELAKELGADAFVDFKK---SDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGL  266 (341)
T ss_pred             -eEEEEeCCHHHHHHHHHcCCcEEEcCCC---ccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecC
Confidence             9999999999999998999999998877   6788888888876 9999999887766688999999998 99999986


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEEE
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  322 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~vv  322 (326)
                      .. ....+++...++.++.++.++....   .++++.++++++++.+.+  .+ ..|++++++++++.+..+... |+++
T Consensus       267 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkvvi  339 (341)
T cd08297         267 PP-GGFIPLDPFDLVLRGITIVGSLVGT---RQDLQEALEFAARGKVKP--HI-QVVPLEDLNEVFEKMEEGKIAGRVVV  339 (341)
T ss_pred             CC-CCCCCCCHHHHHhcccEEEEeccCC---HHHHHHHHHHHHcCCCcc--ee-EEEcHHHHHHHHHHHHcCCccceEEE
Confidence            53 2334556666667888888864332   367899999999997754  34 679999999999999987765 9988


Q ss_pred             Ee
Q 020435          323 WM  324 (326)
Q Consensus       323 ~~  324 (326)
                      ++
T Consensus       340 ~~  341 (341)
T cd08297         340 DF  341 (341)
T ss_pred             eC
Confidence            75

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=6.1e-34  Score=259.03  Aligned_cols=259  Identities=16%  Similarity=0.177  Sum_probs=213.1

Q ss_pred             CCCCcccCCceeEEEEEecCCCCC-ccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDG-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~-~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      ..+|.++|||++|+|+++|+++++ |++||+|++.+.                             .+|           
T Consensus        58 ~~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~~-----------------------------~~g-----------   97 (324)
T cd08291          58 KALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAG-----------------------------SYG-----------   97 (324)
T ss_pred             CCCCcCCCcceEEEEEEECCCccccCCCCCEEEecCC-----------------------------CCC-----------
Confidence            457899999999999999999996 999999975311                             023           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEE-c-cCHHHHHHHHHHHHc
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-G-LGSIGLAVAEGARLC  162 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~-G-ag~~G~~a~~la~~~  162 (326)
                              +|+||+.++++.++++|+++++++++++++.+.|||. +.+..+. ++++++|+ | +|++|++++|+|+++
T Consensus        98 --------~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~  167 (324)
T cd08291          98 --------TYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKAD  167 (324)
T ss_pred             --------cchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHc
Confidence                    9999999999999999999999999988888899986 4555555 56666666 5 599999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      |+ +|+++++++++.+.++++|+++++++.+   .++.+.+++.+++ ++|++|||+|+.. ....+.+++++ |+++.+
T Consensus       168 G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~v~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~  241 (324)
T cd08291         168 GI-KVINIVRRKEQVDLLKKIGAEYVLNSSD---PDFLEDLKELIAKLNATIFFDAVGGGL-TGQILLAMPYG-STLYVY  241 (324)
T ss_pred             CC-EEEEEeCCHHHHHHHHHcCCcEEEECCC---ccHHHHHHHHhCCCCCcEEEECCCcHH-HHHHHHhhCCC-CEEEEE
Confidence            99 8999999999999999999999999887   7888899998887 9999999999987 67889999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCC---CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      |.........++...++.+++++.+++.....   ..+++++++++++ +.  +++.++++|+++++.+|++.+.+++..
T Consensus       242 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~~~~~l~~~~~a~~~~~~~~~~  318 (324)
T cd08291         242 GYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TE--LKTTFASRYPLALTLEAIAFYSKNMST  318 (324)
T ss_pred             EecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-Cc--cccceeeEEcHHHHHHHHHHHHhCCCC
Confidence            86433222235555667789999888754432   1235778888887 64  456688999999999999999987665


Q ss_pred             -EEEEE
Q 020435          319 -RCVIW  323 (326)
Q Consensus       319 -k~vv~  323 (326)
                       |+++.
T Consensus       319 Gkvv~~  324 (324)
T cd08291         319 GKKLLI  324 (324)
T ss_pred             CeEEeC
Confidence             98873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.9e-33  Score=256.70  Aligned_cols=285  Identities=22%  Similarity=0.344  Sum_probs=241.5

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+.+|++++.+++||+|++.++.+|+.|.+|..+.+++|.....   +|....|            
T Consensus        55 ~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~g------------  119 (342)
T cd08266          55 LPLPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVDG------------  119 (342)
T ss_pred             CCCCeecccceEEEEEEeCCCCCCCCCCCEEEEccccccccchhhccccccccccccc---cccccCc------------
Confidence            3568899999999999999999999999999999999999999999999999987543   5655555            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                             ++++|+.++.+.++++|+++++++++.+++.+.+||+++.+..++.++++++|+|+ +.+|++++++++..|+
T Consensus       120 -------~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~  192 (342)
T cd08266         120 -------GYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA  192 (342)
T ss_pred             -------ceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC
Confidence                   99999999999999999999999999999999999998888889999999999987 7999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +|+.+++++++.+.++.++.+.+++..+   .++.+.+.+.+.+ ++|+++++.+... +...+++++++ |+++.++.
T Consensus       193 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~~~g~~~-~~~~~~~l~~~-G~~v~~~~  266 (342)
T cd08266         193 -TVIATAGSEDKLERAKELGADYVIDYRK---EDFVREVRELTGKRGVDVVVEHVGAAT-WEKSLKSLARG-GRLVTCGA  266 (342)
T ss_pred             -EEEEEeCCHHHHHHHHHcCCCeEEecCC---hHHHHHHHHHhCCCCCcEEEECCcHHH-HHHHHHHhhcC-CEEEEEec
Confidence             8999999999888888888877887665   6677777777766 9999999999876 88999999998 99999986


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEEE
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  322 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~vv  322 (326)
                      ... ....++....+.+++++.+.....   ..++..++++++++.+.+  .+++.|+++++++|++.+.++... |+++
T Consensus       267 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  340 (342)
T cd08266         267 TTG-YEAPIDLRHVFWRQLSILGSTMGT---KAELDEALRLVFRGKLKP--VIDSVFPLEEAAEAHRRLESREQFGKIVL  340 (342)
T ss_pred             CCC-CCCCcCHHHHhhcceEEEEEecCC---HHHHHHHHHHHHcCCccc--ceeeeEcHHHHHHHHHHHHhCCCCceEEE
Confidence            532 233444444456688887775332   346888999999997654  467899999999999999887665 8887


Q ss_pred             Ee
Q 020435          323 WM  324 (326)
Q Consensus       323 ~~  324 (326)
                      ++
T Consensus       341 ~~  342 (342)
T cd08266         341 TP  342 (342)
T ss_pred             eC
Confidence            63

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2.1e-33  Score=254.91  Aligned_cols=268  Identities=24%  Similarity=0.374  Sum_probs=225.3

Q ss_pred             CCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCccccccCCcccc
Q 020435            8 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIH   86 (326)
Q Consensus         8 ~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~~   86 (326)
                      +|.++|||++|+|+++|++   +++||+|...+..+|++|.+|+.+..+.|.....   .++ ..+|             
T Consensus        50 ~~~~~G~e~~G~Vv~~G~~---~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------  110 (319)
T cd08242          50 FPGVPGHEFVGIVEEGPEA---ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG-------------  110 (319)
T ss_pred             CCCccCceEEEEEEEeCCC---CCCCCeEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC-------------
Confidence            6889999999999999997   6799999999999999999999999998877654   443 2345             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  166 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~  166 (326)
                            +|++|++++.+.++++|++++.++++.+ .++.++|+ +.+..+++++++|||+|+|.+|++++|+|+.+|+ +
T Consensus       111 ------~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~  181 (319)
T cd08242         111 ------AFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-D  181 (319)
T ss_pred             ------ceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-e
Confidence                  9999999999999999999999888864 35666776 5577889999999999889999999999999999 7


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |++++.++++.+.++++|++.+++..+   .         +.+ ++|++|||.|+...+..++++++++ |+++..+...
T Consensus       182 vi~~~~~~~~~~~~~~~g~~~~~~~~~---~---------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~~~~~  248 (319)
T cd08242         182 VVLVGRHSEKLALARRLGVETVLPDEA---E---------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLKSTYA  248 (319)
T ss_pred             EEEEcCCHHHHHHHHHcCCcEEeCccc---c---------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccC
Confidence            999999999999999999988877654   1         233 8999999999866688999999998 9999876532


Q ss_pred             CCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                        ....++...+..++.++.+++.+      .+++++++++++++++.+.+++.|+++++++|++.+.++...|+++++
T Consensus       249 --~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~vi~~  319 (319)
T cd08242         249 --GPASFDLTKAVVNEITLVGSRCG------PFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKVLLRP  319 (319)
T ss_pred             --CCCccCHHHheecceEEEEEecc------cHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEEEeCC
Confidence              33455666666778888877532      388899999999887666678999999999999999877656998864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=2.7e-33  Score=256.51  Aligned_cols=285  Identities=25%  Similarity=0.439  Sum_probs=235.9

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      ++|.++|+|++|+|+++|++++++++||+|+..+...|+.|..|..+..+.|...+.   .++...|             
T Consensus        54 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------  117 (340)
T TIGR00692        54 KPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------  117 (340)
T ss_pred             CCCcccccceEEEEEEECCCCCcCCCCCEEEECCcCCCCCChhhhCcChhhCcCcce---EeecCCC-------------
Confidence            457799999999999999999999999999999999999999999999999988764   3443445             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  166 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~  166 (326)
                            +|++|++++++.++++|++++++++ +++.++.+|++++  .....++++|+|.|+|++|++++|+|+.+|+..
T Consensus       118 ------~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~  188 (340)
T TIGR00692       118 ------CFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYP  188 (340)
T ss_pred             ------cceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence                  9999999999999999999998655 5666889998875  345678999999888999999999999999834


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+++++++++.+.++++|++++++..+   .++.+.+.+++++ ++|++|||.++...+...+++++++ |+++.+|...
T Consensus       189 v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~  264 (340)
T TIGR00692       189 VIVSDPNEYRLELAKKMGATYVVNPFK---EDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPP  264 (340)
T ss_pred             EEEECCCHHHHHHHHHhCCcEEEcccc---cCHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCC
Confidence            888888888999999999999998877   7788888888776 9999999999776688999999998 9999998753


Q ss_pred             CCCcccccHH-HHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          246 PGSQLSLSSF-EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                      .  ...++.. .+..+++++.+....  ...+.+.+++++++++.+++.+.+.+.+++++++++++.+.+++..|+++++
T Consensus       265 ~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~  340 (340)
T TIGR00692       265 G--KVTIDFTNKVIFKGLTIYGITGR--HMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL  340 (340)
T ss_pred             C--CcccchhhhhhhcceEEEEEecC--CchhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            2  2222233 455567777765421  1234678899999999887655577999999999999999887656998864

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=2.8e-33  Score=256.47  Aligned_cols=284  Identities=27%  Similarity=0.429  Sum_probs=232.6

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+.+|++++.+++||+|++.+..+|+.|.+|..+.+++|...++   .|....|             
T Consensus        56 ~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------  119 (341)
T cd05281          56 KPPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI---LGVDTDG-------------  119 (341)
T ss_pred             CCCcccccceEEEEEEECCCCCCCCCCCEEEECCccCCCCChHHHCcCcccCcccce---EeccCCC-------------
Confidence            467889999999999999999999999999998889999999999999999976543   4443444             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  166 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~  166 (326)
                            +|++|++++.+.++++|++++++.+ ++...+.++++++.  ...+++++|||+|+|++|++++|+|+..|..+
T Consensus       120 ------~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~  190 (341)
T cd05281         120 ------CFAEYVVVPEENLWKNDKDIPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASL  190 (341)
T ss_pred             ------cceEEEEechHHcEECcCCCCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence                  9999999999999999999998555 55567888888654  45578999999988999999999999999856


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+++++++++.+.++++|++++++.+.   .++. .+++.+++ ++|++|||+++......++++|+++ |+++.+|...
T Consensus       191 v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~  265 (341)
T cd05281         191 VIASDPNPYRLELAKKMGADVVINPRE---EDVV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPP  265 (341)
T ss_pred             EEEECCCHHHHHHHHHhCcceeeCccc---ccHH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCC
Confidence            888888889999999999999988766   6777 78888877 9999999999877688999999998 9999998643


Q ss_pred             CCCcccccHH-HHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          246 PGSQLSLSSF-EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                      .  ...+++. ....+++.+.+....  ...+.++.+++++.++.+++.+.+.+.++++++++|++.+.+++..|+++++
T Consensus       266 ~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~gk~vv~~  341 (341)
T cd05281         266 G--PVDIDLNNLVIFKGLTVQGITGR--KMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVLYP  341 (341)
T ss_pred             C--CcccccchhhhccceEEEEEecC--CcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCCCceEEecC
Confidence            2  2222222 245567777766422  1235688899999999887666677889999999999999988833998864

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=4.8e-33  Score=255.04  Aligned_cols=287  Identities=26%  Similarity=0.465  Sum_probs=236.3

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|+|++|+|+.+|++++.|++||+|+..+...|+.|.+|..+....|.....   +|....|             
T Consensus        51 ~~~~~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------  114 (343)
T cd08236          51 HPPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRDG-------------  114 (343)
T ss_pred             CCCcccCcceEEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhHHCcChhhCCCcce---EecccCC-------------
Confidence            467899999999999999999999999999999888999999999998888876543   4443444             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  166 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~  166 (326)
                            +|++|++++++.++++|+++++++++++ ..++|||+++. ..+++++++|||+|+|.+|++++|+|+++|+.+
T Consensus       115 ------~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~  186 (343)
T cd08236         115 ------AFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKR  186 (343)
T ss_pred             ------cccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence                  9999999999999999999999999888 57899999874 778999999999988999999999999999944


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+++++++++.+.++++|++++++..+   .. .+.+++..++ ++|++|||.+.......++++|+++ |+++.+|...
T Consensus       187 v~~~~~~~~~~~~l~~~g~~~~~~~~~---~~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~  261 (343)
T cd08236         187 VIAVDIDDEKLAVARELGADDTINPKE---ED-VEKVRELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPY  261 (343)
T ss_pred             EEEEcCCHHHHHHHHHcCCCEEecCcc---cc-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccC
Confidence            999999999999998899999998876   55 6777777777 8999999998876688999999998 9999998654


Q ss_pred             CCCc-ccccHHHHHhcCCEEEeeeccCCC--CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHc-Ccee-EE
Q 020435          246 PGSQ-LSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK-GKCL-RC  320 (326)
Q Consensus       246 ~~~~-~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~-~~~~-k~  320 (326)
                      .... .......++.++.++.++......  ..+.+++++++++++.+.+.+.+...+++++++++++.+.+ +... |+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  341 (343)
T cd08236         262 GDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKV  341 (343)
T ss_pred             CCcccccCCHHHHHhcCcEEEEEeeccccccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEE
Confidence            2211 122334455678888887643211  14568889999999987644446688999999999999998 5444 77


Q ss_pred             EE
Q 020435          321 VI  322 (326)
Q Consensus       321 vv  322 (326)
                      |+
T Consensus       342 v~  343 (343)
T cd08236         342 LL  343 (343)
T ss_pred             eC
Confidence            64

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.1e-33  Score=254.63  Aligned_cols=274  Identities=22%  Similarity=0.312  Sum_probs=220.2

Q ss_pred             CCCcccCCceeEEEEEecCCCCC-ccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDG-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~-~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      .+|.++|+|++|+|+++|++++. +++||+|++.+..+|+.|+.|..+..             ....             
T Consensus        62 ~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~-------------~~~~-------------  115 (341)
T cd08262          62 GADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLS-------------PEAP-------------  115 (341)
T ss_pred             CCCcccccceeEEEEEeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCC-------------cCCC-------------
Confidence            46889999999999999999987 99999999999999999999932110             0112             


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                            |+|+||++++.+.++++|+++++++++ +.+++++||++ ...++++++++|||+|+|++|++++|+|+.+|+.
T Consensus       116 ------g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~  187 (341)
T cd08262         116 ------GGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVG  187 (341)
T ss_pred             ------CceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence                  399999999999999999999999887 56688999997 5788999999999998899999999999999995


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHH---HHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQ---IIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~---~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .++++++++++.+.++++|+++++++++   .+..+   .+.+.+++ ++|++|||.++......++++++++ |+++.+
T Consensus       188 ~v~~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~  263 (341)
T cd08262         188 PIVASDFSPERRALALAMGADIVVDPAA---DSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVV  263 (341)
T ss_pred             EEEEECCCHHHHHHHHHcCCcEEEcCCC---cCHHHHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEE
Confidence            5788888899999999999999998765   32211   34455555 8999999999864588899999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EE
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RC  320 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~  320 (326)
                      |......  .........+++++.++...   ..+++++++++++++.+++.+.+++.+++++++++++.+.+++.. |+
T Consensus       264 g~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kv  338 (341)
T cd08262         264 GVCMESD--NIEPALAIRKELTLQFSLGY---TPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKI  338 (341)
T ss_pred             CCCCCCC--ccCHHHHhhcceEEEEEecc---cHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEE
Confidence            8653221  22222224467777655321   234788999999999888766667999999999999999988765 88


Q ss_pred             EEE
Q 020435          321 VIW  323 (326)
Q Consensus       321 vv~  323 (326)
                      +++
T Consensus       339 vv~  341 (341)
T cd08262         339 LVD  341 (341)
T ss_pred             EeC
Confidence            863

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.4e-33  Score=255.08  Aligned_cols=268  Identities=26%  Similarity=0.354  Sum_probs=223.3

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|++++++++||+|++.+...|+.|.+|+.+++++|....+   .++...|             
T Consensus        53 ~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~g-------------  116 (325)
T cd08264          53 PMPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSNG-------------  116 (325)
T ss_pred             CCCeecccceeEEEEEECCCCCCCCCCCEEEECCCcCCCCChhhcCCCccccCccce---eeccCCC-------------
Confidence            357899999999999999999999999999998888999999999999999987654   4444445             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT  165 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~  165 (326)
                            +|++|++++++.++++|+++++++++.+++.+.|||+++.. ++++++++|+|+|+ |++|++++++|++.|+ 
T Consensus       117 ------~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-  188 (325)
T cd08264         117 ------GYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGA-  188 (325)
T ss_pred             ------ceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-
Confidence                  99999999999999999999999999999999999998654 88999999999997 9999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      +|+++++    .+.++++|++++++.++     ..+.+++++ +++|+++||.++.. +...+++++++ |+++.+|...
T Consensus       189 ~v~~~~~----~~~~~~~g~~~~~~~~~-----~~~~l~~~~-~~~d~vl~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~  256 (325)
T cd08264         189 EVIAVSR----KDWLKEFGADEVVDYDE-----VEEKVKEIT-KMADVVINSLGSSF-WDLSLSVLGRG-GRLVTFGTLT  256 (325)
T ss_pred             eEEEEeH----HHHHHHhCCCeeecchH-----HHHHHHHHh-CCCCEEEECCCHHH-HHHHHHhhccC-CEEEEEecCC
Confidence            8888863    36677899988887644     245566666 68999999999864 89999999998 9999998642


Q ss_pred             CCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                       .....++...+..++.++.++..+.   +++++++++++...+  .  .+.+.|+++++++|++.+.+++..
T Consensus       257 -~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~--~--~~~~~~~~~~~~~a~~~~~~~~~~  321 (325)
T cd08264         257 -GGEVKLDLSDLYSKQISIIGSTGGT---RKELLELVKIAKDLK--V--KVWKTFKLEEAKEALKELFSKERD  321 (325)
T ss_pred             -CCCCccCHHHHhhcCcEEEEccCCC---HHHHHHHHHHHHcCC--c--eeEEEEcHHHHHHHHHHHHcCCCc
Confidence             2235566666666788888875443   467888999986443  2  356889999999999999876654

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=1e-32  Score=251.85  Aligned_cols=281  Identities=28%  Similarity=0.481  Sum_probs=234.1

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|+|++|+|+.+|++++++++||+|++.+...|+.|.+|..+++++|.....   +|....|             
T Consensus        51 ~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------  114 (334)
T cd08234          51 APPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRNG-------------  114 (334)
T ss_pred             CCCcccccceEEEEEEeCCCCCCCCCCCEEEEcCCcCCCCCccccCcChhhCCCcce---eccCCCC-------------
Confidence            378899999999999999999999999999999999999999999999998877653   4444455             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  166 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~  166 (326)
                            +|++|++++.+.++++|+++++.+++.+ ..+.++++++ +.++++++++|||+|+|.+|++++++|++.|+..
T Consensus       115 ------~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~  186 (334)
T cd08234         115 ------GFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASR  186 (334)
T ss_pred             ------cceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence                  9999999999999999999999998876 6888999876 7889999999999988999999999999999834


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+++++++++.+.++++|++++++..+   .++...  +.+.+ ++|++|||.+........+++++++ |+++.+|...
T Consensus       187 v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~--~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~  260 (334)
T cd08234         187 VTVAEPNEEKLELAKKLGATETVDPSR---EDPEAQ--KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYA  260 (334)
T ss_pred             EEEECCCHHHHHHHHHhCCeEEecCCC---CCHHHH--HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCC
Confidence            899999999999999999888888776   455444  34444 9999999998766688999999998 9999998754


Q ss_pred             CCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEEE
Q 020435          246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  322 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~vv  322 (326)
                      ......+....+..+++++.++...    .+.+++++++++++.+++.+.++.++++++++++++.+.+ +.. |+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi  333 (334)
T cd08234         261 PDARVSISPFEIFQKELTIIGSFIN----PYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV  333 (334)
T ss_pred             CCCCcccCHHHHHhCCcEEEEeccC----HHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence            3333455555555567888777532    3568899999999988765556788999999999999998 444 8775

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=4.5e-33  Score=253.01  Aligned_cols=258  Identities=20%  Similarity=0.239  Sum_probs=218.6

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      +..|.++|||++|+|+++|++++++++||+|++.+                              ..             
T Consensus        56 ~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~------------------------------~~-------------   92 (324)
T cd08292          56 PELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAP------------------------------VH-------------   92 (324)
T ss_pred             CCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEecc------------------------------CC-------------
Confidence            45689999999999999999999999999996532                              12             


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                            |+|++|+.+++..++++|+++++++++++++.+.|||+++ +.++++++++|||+|+ |.+|++++|+|+++|+
T Consensus        93 ------g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~  165 (324)
T cd08292          93 ------GTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI  165 (324)
T ss_pred             ------CcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC
Confidence                  3899999999999999999999999999988889999875 5688999999999987 9999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +++++..++++.+.++++|++++++..+   .++.+.+++.+++ ++|++|||.|+.. ...++++++++ |+++.+|.
T Consensus       166 -~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~-g~~v~~g~  239 (324)
T cd08292         166 -NVINLVRRDAGVAELRALGIGPVVSTEQ---PGWQDKVREAAGGAPISVALDSVGGKL-AGELLSLLGEG-GTLVSFGS  239 (324)
T ss_pred             -eEEEEecCHHHHHHHHhcCCCEEEcCCC---chHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHhhcCC-cEEEEEec
Confidence             8999998999989888899999998877   7888889999988 9999999999976 78999999998 99999986


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCC-------CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLK-------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  316 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~  316 (326)
                      .. .....+++...+.++.++.++......       ..+.++.+++++++|.+++.  +.+.|+++++.+|++.+.++.
T Consensus       240 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~  316 (324)
T cd08292         240 MS-GEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFDLGDAAKAAAASMRPG  316 (324)
T ss_pred             CC-CCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEecHHHHHHHHHHHHcCC
Confidence            42 233455655566788998887644221       12357889999999987754  458899999999999998766


Q ss_pred             ee-EEEE
Q 020435          317 CL-RCVI  322 (326)
Q Consensus       317 ~~-k~vv  322 (326)
                      .. |+++
T Consensus       317 ~~~kvvv  323 (324)
T cd08292         317 RAGKVLL  323 (324)
T ss_pred             CCceEEe
Confidence            55 8776

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=5.2e-33  Score=255.36  Aligned_cols=273  Identities=23%  Similarity=0.308  Sum_probs=222.6

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|+++++|++||+|++.+...|+.|..|..        ...   .|...+|            
T Consensus        75 ~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~--------~~~---~~~~~~g------------  131 (350)
T cd08274          75 LSFPRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD--------IDY---IGSERDG------------  131 (350)
T ss_pred             CCCCcccCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc--------ccc---cCCCCCc------------
Confidence            45789999999999999999999999999999988888888766421        111   2222334            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                             ++++|+.++...++++|+++++++++++++.+.|||+++ ...+++++++|||+|+ |++|++++++|+++|+
T Consensus       132 -------~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~  203 (350)
T cd08274         132 -------GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA  203 (350)
T ss_pred             -------cceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC
Confidence                   999999999999999999999999999999999999976 7788999999999997 9999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +|++++.+. +.+.++++|++.+++...   ....+  ...+.+ ++|++|||.++.. +..++++++++ |+++.+|.
T Consensus       204 -~vi~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~~--~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~  274 (350)
T cd08274         204 -IVIAVAGAA-KEEAVRALGADTVILRDA---PLLAD--AKALGGEPVDVVADVVGGPL-FPDLLRLLRPG-GRYVTAGA  274 (350)
T ss_pred             -EEEEEeCch-hhHHHHhcCCeEEEeCCC---ccHHH--HHhhCCCCCcEEEecCCHHH-HHHHHHHhccC-CEEEEecc
Confidence             788888665 788888899876666544   33333  455566 9999999999875 89999999998 99999986


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEEE
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  322 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~vv  322 (326)
                      .. .....++...++.+++++.++....   .+.+.++++++.+++++.  .+++.|++++++++++.+..+... |+++
T Consensus       275 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvvi  348 (350)
T cd08274         275 IA-GPVVELDLRTLYLKDLTLFGSTLGT---REVFRRLVRYIEEGEIRP--VVAKTFPLSEIREAQAEFLEKRHVGKLVL  348 (350)
T ss_pred             cC-CccccCCHHHhhhcceEEEEeecCC---HHHHHHHHHHHHCCCccc--ccccccCHHHHHHHHHHHhcCCCceEEEE
Confidence            42 2224566666677788988876432   357889999999997653  366889999999999999887665 8887


Q ss_pred             Ee
Q 020435          323 WM  324 (326)
Q Consensus       323 ~~  324 (326)
                      ++
T Consensus       349 ~~  350 (350)
T cd08274         349 VP  350 (350)
T ss_pred             eC
Confidence            64

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.3e-32  Score=250.54  Aligned_cols=282  Identities=31%  Similarity=0.459  Sum_probs=231.9

Q ss_pred             CCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCC
Q 020435            3 DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG   82 (326)
Q Consensus         3 ~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~   82 (326)
                      +|....|.++|||++|+|+.+|++++++++||+|++.+...|+.|.+|+.+.+++|.....   .|....|         
T Consensus        49 ~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g---------  116 (332)
T cd08259          49 FPRGKYPLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAE---YGEEVDG---------  116 (332)
T ss_pred             CCCCCCCeeccccceEEEEEECCCCccCCCCCEEEECCCCCCcCChhhhCCCcccCCCccc---cccccCC---------
Confidence            4445668899999999999999999999999999999888999999999999999976532   4544445         


Q ss_pred             cccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHH
Q 020435           83 ETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARL  161 (326)
Q Consensus        83 ~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~  161 (326)
                                +|++|++++.+.++++|+++++++++.+++.+.|||+++.. .++.+++++||+|+ |.+|++++++++.
T Consensus       117 ----------~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~  185 (332)
T cd08259         117 ----------GFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKA  185 (332)
T ss_pred             ----------eeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence                      99999999999999999999999999999999999998766 88999999999987 9999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .|. +|+++++++++.+.+++++.+++++.+     ++.+.+.+..  ++|++++|++... ...++++++++ |+++.+
T Consensus       186 ~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~d~v~~~~g~~~-~~~~~~~~~~~-g~~v~~  255 (332)
T cd08259         186 LGA-RVIAVTRSPEKLKILKELGADYVIDGS-----KFSEDVKKLG--GADVVIELVGSPT-IEESLRSLNKG-GRLVLI  255 (332)
T ss_pred             cCC-eEEEEeCCHHHHHHHHHcCCcEEEecH-----HHHHHHHhcc--CCCEEEECCChHH-HHHHHHHhhcC-CEEEEE
Confidence            999 899999998888888888987777543     2555555543  7999999999887 88999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EE
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RC  320 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~  320 (326)
                      +..... ...+.......++..+.++..   ...+++++++++++++.+++  .+++.++++++++|++.+.+++.. |+
T Consensus       256 g~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kv  329 (332)
T cd08259         256 GNVTPD-PAPLRPGLLILKEIRIIGSIS---ATKADVEEALKLVKEGKIKP--VIDRVVSLEDINEALEDLKSGKVVGRI  329 (332)
T ss_pred             cCCCCC-CcCCCHHHHHhCCcEEEEecC---CCHHHHHHHHHHHHcCCCcc--ceeEEEcHHHHHHHHHHHHcCCcccEE
Confidence            864322 122233333346777766632   22457888999999997653  367899999999999999988765 88


Q ss_pred             EEE
Q 020435          321 VIW  323 (326)
Q Consensus       321 vv~  323 (326)
                      +++
T Consensus       330 v~~  332 (332)
T cd08259         330 VLK  332 (332)
T ss_pred             EeC
Confidence            763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=8.5e-33  Score=253.60  Aligned_cols=261  Identities=20%  Similarity=0.231  Sum_probs=203.9

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++|++|++||+|+..                            +    +            
T Consensus        66 ~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~----------------------------~----~------------  101 (345)
T cd08293          66 APWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF----------------------------N----W------------  101 (345)
T ss_pred             CCccCCCceEeeEEEEEeccCCCCCCCCCEEEec----------------------------C----C------------
Confidence            3578899999999999999999999999999641                            0    2            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccc----cccccchhhhhhhhhhhhcccCCC--CEEEEEcc-CHHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEG  158 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~----aa~l~~~~~ta~~~l~~~~~~~~~--~~vlI~Ga-g~~G~~a~~l  158 (326)
                             +|+||++++++.++++|+++++++    +++++.++.|||+++.+.++++++  ++|||+|+ |++|++++|+
T Consensus       102 -------~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiql  174 (345)
T cd08293         102 -------PWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQI  174 (345)
T ss_pred             -------CceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHH
Confidence                   799999999999999999865443    456677899999988788888877  99999987 9999999999


Q ss_pred             HHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcE
Q 020435          159 ARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK  237 (326)
Q Consensus       159 a~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~  237 (326)
                      |+++|+.+|+++++++++.+.+++ +|+++++++.+   .++.+.+++++++++|++|||+|+.. +..++++++++ |+
T Consensus       175 Ak~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~---~~~~~~i~~~~~~gvd~vid~~g~~~-~~~~~~~l~~~-G~  249 (345)
T cd08293         175 GRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT---DNVAERLRELCPEGVDVYFDNVGGEI-SDTVISQMNEN-SH  249 (345)
T ss_pred             HHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC---CCHHHHHHHHCCCCceEEEECCCcHH-HHHHHHHhccC-CE
Confidence            999998569999999999998876 99999999887   78888888887669999999999987 79999999998 99


Q ss_pred             EEEeccCCCC-C--c--cccc--HHHHH-hcCCEEEeeeccCCC--CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHH
Q 020435          238 TIVLGVDQPG-S--Q--LSLS--SFEVL-HSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINS  307 (326)
Q Consensus       238 ~v~~g~~~~~-~--~--~~~~--~~~~~-~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~  307 (326)
                      ++.+|..... .  .  ..+.  ...+. .++++..........  ..+.++++++++++|.+++.  ....++++++++
T Consensus       250 iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~  327 (345)
T cd08293         250 IILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVK--ETVYEGLENAGE  327 (345)
T ss_pred             EEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCccce--eEEeecHHHHHH
Confidence            9999853211 0  0  1111  11111 233333333211111  01236678899999987654  335579999999


Q ss_pred             HHHHHHcCcee-EEEEEe
Q 020435          308 AFDLLIKGKCL-RCVIWM  324 (326)
Q Consensus       308 a~~~~~~~~~~-k~vv~~  324 (326)
                      |++.+.+++.. |+++.+
T Consensus       328 A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         328 AFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             HHHHHhcCCCCCeEEEEC
Confidence            99999988765 999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=5.1e-33  Score=234.91  Aligned_cols=268  Identities=22%  Similarity=0.279  Sum_probs=219.4

Q ss_pred             CCCC-CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 020435            1 MKDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD   79 (326)
Q Consensus         1 g~~~-~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~   79 (326)
                      |.|| .+.+|.|-|+|++|+|+.+|+++++|++||+|+....                                      
T Consensus        69 GvYpvrP~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~~a--------------------------------------  110 (354)
T KOG0025|consen   69 GVYPVRPELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPLSA--------------------------------------  110 (354)
T ss_pred             cccCCCCCCCcccCCcceEEEEEecCCcCccCCCCeEeecCC--------------------------------------
Confidence            6788 6789999999999999999999999999999975422                                      


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHH
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEG  158 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~l  158 (326)
                                +.|+|++|.+.+++.++++++.++.+.||++...-+|||..+.+.-++.+||+|.-.|| +++|++.+|+
T Consensus       111 ----------~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQl  180 (354)
T KOG0025|consen  111 ----------NLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQL  180 (354)
T ss_pred             ----------CCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHH
Confidence                      13599999999999999999999999999999999999999888999999999999998 8999999999


Q ss_pred             HHHcCCCEEEEEcCChhHHHHH----HhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhc
Q 020435          159 ARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRK  233 (326)
Q Consensus       159 a~~~g~~~V~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~  233 (326)
                      ||++|. +.+.++|+....+.+    +.+|+++||..+++.+.....   ..... ++.+.|||+|+.. .....+.|..
T Consensus       181 aka~Gi-ktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~k---~~~~~~~prLalNcVGGks-a~~iar~L~~  255 (354)
T KOG0025|consen  181 AKALGI-KTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMKK---FKGDNPRPRLALNCVGGKS-ATEIARYLER  255 (354)
T ss_pred             HHHhCc-ceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhhh---hhccCCCceEEEeccCchh-HHHHHHHHhc
Confidence            999999 889999888776655    569999999876633322221   11223 8999999999988 7788899999


Q ss_pred             CCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCC--------CHHHHHHHHhCCCCCCCcceeeeeccccH
Q 020435          234 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS--------DIPILLKRYMDKELELDKFVTHEMKFEEI  305 (326)
Q Consensus       234 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~~~g~~~~~~~i~~~~~l~~i  305 (326)
                      + |+++.||. ++..+..++...+++|++.+.|+|+..+...+        -+.++.++++.|++...  -.+..++++-
T Consensus       256 G-gtmvTYGG-MSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~--~~e~v~L~~~  331 (354)
T KOG0025|consen  256 G-GTMVTYGG-MSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAP--NCEKVPLADH  331 (354)
T ss_pred             C-ceEEEecC-ccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccc--cceeeechhh
Confidence            8 99999997 56778888888899999999999987654221        25678899999987655  3356788887


Q ss_pred             HHHHHHHHcCc--eeEEEEEeC
Q 020435          306 NSAFDLLIKGK--CLRCVIWMG  325 (326)
Q Consensus       306 ~~a~~~~~~~~--~~k~vv~~~  325 (326)
                      ..|++..-...  ..|-++.++
T Consensus       332 ~tald~~L~~~~~~~Kq~i~~e  353 (354)
T KOG0025|consen  332 KTALDAALSKFGKSGKQIIVLE  353 (354)
T ss_pred             hHHHHHHHHHhccCCceEEEec
Confidence            77777554332  236666553

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=5.4e-33  Score=252.91  Aligned_cols=258  Identities=21%  Similarity=0.247  Sum_probs=207.9

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCc
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE   83 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~   83 (326)
                      +....|.|+|.|++|+|++.|+   +|++||||+..                                            
T Consensus        53 ~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~--------------------------------------------   85 (325)
T TIGR02825        53 RLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS--------------------------------------------   85 (325)
T ss_pred             cCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe--------------------------------------------
Confidence            3334578999999999999874   69999999642                                            


Q ss_pred             ccccccccccccceEEecccceEEc----CCCCCcccc-ccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHH
Q 020435           84 TIHHFVSVSSFSEYTVLDIAHVVKV----DPTVPPNRA-CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAE  157 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~~~~~i----p~~~s~~~a-a~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~  157 (326)
                              ++|++|+.++.+++.++    |++++++++ +++++++.|||+++.+.+++++|++|||+|+ |++|++++|
T Consensus        86 --------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiq  157 (325)
T TIGR02825        86 --------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQ  157 (325)
T ss_pred             --------cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHH
Confidence                    16899999999988887    999999987 6788899999998888899999999999986 999999999


Q ss_pred             HHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcE
Q 020435          158 GARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK  237 (326)
Q Consensus       158 la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~  237 (326)
                      +||..|+ +|+++++++++.+.++++|+++++++++  ...+.+.++..+++++|++|||+|+.. +..++++++++ |+
T Consensus       158 lAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~--~~~~~~~~~~~~~~gvdvv~d~~G~~~-~~~~~~~l~~~-G~  232 (325)
T TIGR02825       158 IAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT--VKSLEETLKKASPDGYDCYFDNVGGEF-SNTVIGQMKKF-GR  232 (325)
T ss_pred             HHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc--cccHHHHHHHhCCCCeEEEEECCCHHH-HHHHHHHhCcC-cE
Confidence            9999999 8999999999999999999999999875  124555666665559999999999877 79999999998 99


Q ss_pred             EEEeccCCCC---Cccc--ccHHHHHhcCCEEEeeeccCCC---CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHH
Q 020435          238 TIVLGVDQPG---SQLS--LSSFEVLHSGKILMGSLFGGLK---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF  309 (326)
Q Consensus       238 ~v~~g~~~~~---~~~~--~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~  309 (326)
                      ++.+|.....   ....  .....++.+++++.++......   ..+.++++++++++|++++.  +...|+++++++|+
T Consensus       233 iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~  310 (325)
T TIGR02825       233 IAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYK--EYVIEGFENMPAAF  310 (325)
T ss_pred             EEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccc--eeccccHHHHHHHH
Confidence            9999864321   0111  1233455668888877543211   12357889999999988765  44678999999999


Q ss_pred             HHHHcCcee-EEEEE
Q 020435          310 DLLIKGKCL-RCVIW  323 (326)
Q Consensus       310 ~~~~~~~~~-k~vv~  323 (326)
                      +.+.+++.. |+|+.
T Consensus       311 ~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       311 MGMLKGENLGKTIVK  325 (325)
T ss_pred             HHHhcCCCCCeEEeC
Confidence            999988765 88863

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=3e-32  Score=248.38  Aligned_cols=280  Identities=26%  Similarity=0.417  Sum_probs=230.1

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCC
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG   82 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~   82 (326)
                      +...+|.++|||++|+|+++|++++++++||+|++.+. ..|+.|.+|+.+++++|.....   +++...|         
T Consensus        49 ~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g---------  116 (330)
T cd08245          49 GGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQG---------  116 (330)
T ss_pred             CCCCCCcccCccceEEEEEECCCCcccccCCEEEEccccCCCCCChhhhCcCcccCcCccc---cCcccCC---------
Confidence            44457889999999999999999999999999987555 6799999999999999988654   4443445         


Q ss_pred             cccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHc
Q 020435           83 ETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLC  162 (326)
Q Consensus        83 ~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~  162 (326)
                                +|++|+.++...++++|+++++++++.+.+.+.|||+++.. .++.++++|||+|+|.+|++++++|+..
T Consensus       117 ----------~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~  185 (330)
T cd08245         117 ----------GYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAM  185 (330)
T ss_pred             ----------ccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHC
Confidence                      99999999999999999999999999999999999997654 7899999999998888999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      |. +|+++++++++.+.++++|++.+++...   ......    ..+++|+++||.+.......++++++++ |+++.++
T Consensus       186 G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~  256 (330)
T cd08245         186 GF-ETVAITRSPDKRELARKLGADEVVDSGA---ELDEQA----AAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVG  256 (330)
T ss_pred             CC-EEEEEeCCHHHHHHHHHhCCcEEeccCC---cchHHh----ccCCCCEEEECCCcHHHHHHHHHhcccC-CEEEEEC
Confidence            99 8999999999999998899988887655   333222    2238999999988766688999999998 9999998


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEE
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCV  321 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~v  321 (326)
                      .... ....+....++.++.++.+++.+.   ...++.++++++++.+.+   ..+.+++++++++++.+.+++.. |++
T Consensus       257 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v  329 (330)
T cd08245         257 LPES-PPFSPDIFPLIMKRQSIAGSTHGG---RADLQEALDFAAEGKVKP---MIETFPLDQANEAYERMEKGDVRFRFV  329 (330)
T ss_pred             CCCC-CccccchHHHHhCCCEEEEeccCC---HHHHHHHHHHHHcCCCcc---eEEEEcHHHHHHHHHHHHcCCCCccee
Confidence            6432 223333445666788888876442   356888899999997764   33789999999999999887765 765


Q ss_pred             E
Q 020435          322 I  322 (326)
Q Consensus       322 v  322 (326)
                      +
T Consensus       330 ~  330 (330)
T cd08245         330 L  330 (330)
T ss_pred             C
Confidence            4

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2.3e-32  Score=249.01  Aligned_cols=276  Identities=25%  Similarity=0.335  Sum_probs=227.7

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      .+|...+|.++|||++|+|+.+|++++++++||+|++.+. .+|+.|.+|..+.+++|....+   .++..+|       
T Consensus        52 ~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------  121 (329)
T cd08298          52 DLPPPKLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------  121 (329)
T ss_pred             CCCCCCCCccccccccEEEEEECCCCCCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------
Confidence            3444567889999999999999999999999999987554 6799999999999999987775   5555556       


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                                  +|++|+.++.+.++++|+++++.+++.+.+++.|||+++ +.++++++++|||+|+|++|++++++++
T Consensus       122 ------------~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~  188 (329)
T cd08298         122 ------------GYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIAR  188 (329)
T ss_pred             ------------ceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHH
Confidence                        999999999999999999999999999999999999987 8899999999999998999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  240 (326)
                      +.|. +|+++++++++.+.++++|++++++...   .         .++++|+++++.+.......++++++++ |+++.
T Consensus       189 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~---------~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~  254 (329)
T cd08298         189 YQGA-EVFAFTRSGEHQELARELGADWAGDSDD---L---------PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVL  254 (329)
T ss_pred             HCCC-eEEEEcCChHHHHHHHHhCCcEEeccCc---c---------CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEE
Confidence            9998 9999999999999999999988887654   1         1238999999877666689999999998 99999


Q ss_pred             eccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-E
Q 020435          241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-R  319 (326)
Q Consensus       241 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k  319 (326)
                      +|... .....++... +.++..+.++...   ..++++.++++++++.+++  . .+.|+++++++|++.+.+++.. |
T Consensus       255 ~g~~~-~~~~~~~~~~-~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~l~~--~-~~~~~~~~~~~a~~~~~~~~~~~~  326 (329)
T cd08298         255 AGIHM-SDIPAFDYEL-LWGEKTIRSVANL---TRQDGEEFLKLAAEIPIKP--E-VETYPLEEANEALQDLKEGRIRGA  326 (329)
T ss_pred             EcCCC-CCCCccchhh-hhCceEEEEecCC---CHHHHHHHHHHHHcCCCCc--e-EEEEeHHHHHHHHHHHHcCCCcce
Confidence            88532 1222233332 3456667666422   1346888999999997754  2 4889999999999999987765 7


Q ss_pred             EEE
Q 020435          320 CVI  322 (326)
Q Consensus       320 ~vv  322 (326)
                      +++
T Consensus       327 ~v~  329 (329)
T cd08298         327 AVL  329 (329)
T ss_pred             eeC
Confidence            663

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=2.3e-32  Score=250.07  Aligned_cols=259  Identities=19%  Similarity=0.232  Sum_probs=209.9

Q ss_pred             CCCcccCCce--eEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            7 VFPRILGHEA--IGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         7 ~~p~i~G~e~--~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      .+|+++|+++  .|.+..+|+++++|++||+|+..                                             
T Consensus        66 ~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V~~~---------------------------------------------  100 (338)
T cd08295          66 LPPFKPGEVITGYGVAKVVDSGNPDFKVGDLVWGF---------------------------------------------  100 (338)
T ss_pred             CCCcCCCCeEeccEEEEEEecCCCCCCCCCEEEec---------------------------------------------
Confidence            5688999865  45555688889999999999531                                             


Q ss_pred             cccccccccccceEEecc-cceEEcC-CCCCcc-ccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHH
Q 020435           85 IHHFVSVSSFSEYTVLDI-AHVVKVD-PTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGAR  160 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~-~~~~~ip-~~~s~~-~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~  160 (326)
                             |+|+||+++++ ..++++| ++++++ +++++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+
T Consensus       101 -------g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk  173 (338)
T cd08295         101 -------TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAK  173 (338)
T ss_pred             -------CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHH
Confidence                   28999999999 7999995 678887 789999999999998878899999999999997 999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      ++|+ +|+++++++++.+++++ +|+++++++.+  ..++.+.+++.+++++|++||++|+.. +..++++++++ |+++
T Consensus       174 ~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~~gvd~v~d~~g~~~-~~~~~~~l~~~-G~iv  248 (338)
T cd08295         174 LKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKE--EPDLDAALKRYFPNGIDIYFDNVGGKM-LDAVLLNMNLH-GRIA  248 (338)
T ss_pred             HcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCC--cccHHHHHHHhCCCCcEEEEECCCHHH-HHHHHHHhccC-cEEE
Confidence            9999 89999999999999998 99999998654  146777888877569999999999865 89999999998 9999


Q ss_pred             EeccCCCCCc----ccccHHHHHhcCCEEEeeeccCCCC--CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHH
Q 020435          240 VLGVDQPGSQ----LSLSSFEVLHSGKILMGSLFGGLKA--KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI  313 (326)
Q Consensus       240 ~~g~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~  313 (326)
                      .+|.......    ...+...++.+++++.++.......  .+.++++++++++|++++.  +...|+++++++|++.+.
T Consensus       249 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~  326 (338)
T cd08295         249 ACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--EDIADGLESAPEAFVGLF  326 (338)
T ss_pred             EecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--eecccCHHHHHHHHHHHh
Confidence            9986432111    1123445566788888865443211  2346788999999987654  446799999999999999


Q ss_pred             cCcee-EEEEEe
Q 020435          314 KGKCL-RCVIWM  324 (326)
Q Consensus       314 ~~~~~-k~vv~~  324 (326)
                      +++.. |+++++
T Consensus       327 ~~~~~GkvVl~~  338 (338)
T cd08295         327 TGSNIGKQVVKV  338 (338)
T ss_pred             cCCCCceEEEEC
Confidence            88765 999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7.4e-32  Score=243.41  Aligned_cols=250  Identities=26%  Similarity=0.434  Sum_probs=213.2

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      ..+|.++|+|++|+|+++|++++.+++||+|++.+. .+|+.|.+|..+..+.|...+.   +|....|           
T Consensus        53 ~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-----------  118 (306)
T cd08258          53 VETPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQADG-----------  118 (306)
T ss_pred             CCCCeeeccceEEEEEEECCCcCcCCCCCEEEEccCcCCCCCCcchhCcCcccCCCCce---eeecCCC-----------
Confidence            356889999999999999999999999999988764 7899999999999999976542   3433344           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  164 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~  164 (326)
                              +|++|++++...++++|+++++++++ +...+++||+++...++++++++|||.|+|.+|++++++|+..|+
T Consensus       119 --------~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~  189 (306)
T cd08258         119 --------GFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA  189 (306)
T ss_pred             --------ceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence                    99999999999999999999999887 666889999998888999999999998889999999999999999


Q ss_pred             CEEEEEc--CChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          165 TRIIGVD--VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       165 ~~V~~~~--~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                       +|+.+.  +++++.+.++++|++++ +...   .++.+.+.+..++ ++|++|||.++...+...+++|+++ |+++.+
T Consensus       190 -~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~---~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~  263 (306)
T cd08258         190 -TVVVVGTEKDEVRLDVAKELGADAV-NGGE---EDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQV  263 (306)
T ss_pred             -EEEEECCCCCHHHHHHHHHhCCccc-CCCc---CCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEE
Confidence             787764  34557778888999888 7766   7888888888776 9999999998766688999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCC
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK  288 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g  288 (326)
                      |... .....++...++.+++++.|+++++   ++|++++++++++|
T Consensus       264 g~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~~~~~  306 (306)
T cd08258         264 GIFG-PLAASIDVERIIQKELSVIGSRSST---PASWETALRLLASG  306 (306)
T ss_pred             cccC-CCCcccCHHHHhhcCcEEEEEecCc---hHhHHHHHHHHhcC
Confidence            9854 3346667777788999999998765   57899999999875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=1.4e-31  Score=243.72  Aligned_cols=255  Identities=20%  Similarity=0.227  Sum_probs=207.1

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      ++|.++|+|++|+|++   .+++|++||||+..                                               
T Consensus        58 ~~p~v~G~e~~G~V~~---~~~~~~~Gd~V~~~-----------------------------------------------   87 (329)
T cd08294          58 EGDTMIGTQVAKVIES---KNSKFPVGTIVVAS-----------------------------------------------   87 (329)
T ss_pred             CCCcEecceEEEEEec---CCCCCCCCCEEEee-----------------------------------------------
Confidence            4689999999999995   45689999999542                                               


Q ss_pred             cccccccccceEEeccc---ceEEcCCCCCc-----cccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHH
Q 020435           87 HFVSVSSFSEYTVLDIA---HVVKVDPTVPP-----NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAE  157 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~---~~~~ip~~~s~-----~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~  157 (326)
                           ++|++|+.++.+   .++++|++++.     ..+++++++++|||+++.+.+++++|++|||+|+ |++|++++|
T Consensus        88 -----~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiq  162 (329)
T cd08294          88 -----FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQ  162 (329)
T ss_pred             -----CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHH
Confidence                 168899999999   99999999982     2234678899999998888899999999999986 999999999


Q ss_pred             HHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcE
Q 020435          158 GARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK  237 (326)
Q Consensus       158 la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~  237 (326)
                      +|+..|+ +|+++++++++.+.++++|+++++++.+   .++.+.+++.+++++|++||++|+.. +..++++++++ |+
T Consensus       163 lA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~---~~~~~~v~~~~~~gvd~vld~~g~~~-~~~~~~~l~~~-G~  236 (329)
T cd08294         163 IAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKT---VSLEEALKEAAPDGIDCYFDNVGGEF-SSTVLSHMNDF-GR  236 (329)
T ss_pred             HHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHCCCCcEEEEECCCHHH-HHHHHHhhccC-CE
Confidence            9999999 8999999999999999999999999887   78888888877669999999999966 89999999998 99


Q ss_pred             EEEeccCCCCC---c--ccccHHHHHhcCCEEEeeeccCCC--CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHH
Q 020435          238 TIVLGVDQPGS---Q--LSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD  310 (326)
Q Consensus       238 ~v~~g~~~~~~---~--~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~  310 (326)
                      ++.+|......   .  .......++.+++++.++......  ..+.++++++++++|.+++.  ....++++++++|++
T Consensus       237 iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~A~~  314 (329)
T cd08294         237 VAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYR--EHVTEGFENMPQAFI  314 (329)
T ss_pred             EEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCC--cccccCHHHHHHHHH
Confidence            99998532111   1  122233456678888887543221  12236788899999987765  335689999999999


Q ss_pred             HHHcCcee-EEEEEe
Q 020435          311 LLIKGKCL-RCVIWM  324 (326)
Q Consensus       311 ~~~~~~~~-k~vv~~  324 (326)
                      .+.+++.. |+++++
T Consensus       315 ~~~~~~~~gkvvv~~  329 (329)
T cd08294         315 GMLKGENTGKAIVKV  329 (329)
T ss_pred             HHHcCCCCCeEEEeC
Confidence            99988765 998863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=1.2e-30  Score=236.97  Aligned_cols=262  Identities=20%  Similarity=0.237  Sum_probs=218.3

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++++++++||+|++...                            ...             
T Consensus        57 ~~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----------------------------~~~-------------   95 (324)
T cd08244          57 PELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTG----------------------------RAG-------------   95 (324)
T ss_pred             CCCCcCCccceEEEEEEeCCCCCCCCCCCEEEEccC----------------------------CCC-------------
Confidence            456889999999999999999999999999976421                            012             


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                            |+|++|+.++.+.++++|+++++++++++++.+.|||. +.+.++++++++|+|+|+ |.+|++++++|+..|+
T Consensus        96 ------g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~  168 (324)
T cd08244          96 ------GGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA  168 (324)
T ss_pred             ------ceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC
Confidence                  39999999999999999999999999999999999964 678889999999999986 9999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +|+++++++++.+.++++|++++++..+   .++.+.+.+.+++ ++|+++||+|+.. ...++++++++ |+++.+|.
T Consensus       169 -~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~-g~~v~~g~  242 (324)
T cd08244         169 -TVVGAAGGPAKTALVRALGADVAVDYTR---PDWPDQVREALGGGGVTVVLDGVGGAI-GRAALALLAPG-GRFLTYGW  242 (324)
T ss_pred             -EEEEEeCCHHHHHHHHHcCCCEEEecCC---ccHHHHHHHHcCCCCceEEEECCChHh-HHHHHHHhccC-cEEEEEec
Confidence             8999999999999999999988888777   6788888888877 9999999999887 78999999998 99999987


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCC---CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-E
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-R  319 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k  319 (326)
                      .... ...++...++.++.++.++.......   .+.+++++++++++.+..  .++..|+++++++|++.+.+++.. |
T Consensus       243 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~k  319 (324)
T cd08244         243 ASGE-WTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVP--VVGQTFPLERAAEAHAALEARSTVGK  319 (324)
T ss_pred             CCCC-CCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccC--ccceEEeHHHHHHHHHHHHcCCCCce
Confidence            5322 22455445567788888775433211   235777889999997653  366889999999999999887766 8


Q ss_pred             EEEEe
Q 020435          320 CVIWM  324 (326)
Q Consensus       320 ~vv~~  324 (326)
                      +++++
T Consensus       320 vv~~~  324 (324)
T cd08244         320 VLLLP  324 (324)
T ss_pred             EEEeC
Confidence            88764

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=4.4e-30  Score=234.22  Aligned_cols=278  Identities=23%  Similarity=0.329  Sum_probs=228.1

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+.+|++++++++||+|++..+..|..+.+      ..|.....   +|...+|             
T Consensus        56 ~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~------~~~~~~~~---~~~~~~g-------------  113 (336)
T cd08276          56 KDPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPP------TAEDEASA---LGGPIDG-------------  113 (336)
T ss_pred             CCCcccccceeEEEEEeCCCCcCCCCCCEEEEecccccccccc------cccccccc---cccccCc-------------
Confidence            4688999999999999999999999999999876665554443      34433221   3433344             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  166 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~  166 (326)
                            +|++|+.++.+.++++|+++++.+++.+.+.+.+||+++.+..+++++++|+|+|+|++|+++++++++.|+ +
T Consensus       114 ------~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~  186 (336)
T cd08276         114 ------VLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-R  186 (336)
T ss_pred             ------eeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-E
Confidence                  999999999999999999999999999999999999988777889999999999889999999999999999 8


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |++++.++++.+.++++|.+++++...  ..++.+.+++.+++ ++|+++||.+... ...++++++++ |+++.+|...
T Consensus       187 v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~-G~~v~~g~~~  262 (336)
T cd08276         187 VIATSSSDEKLERAKALGADHVINYRT--TPDWGEEVLKLTGGRGVDHVVEVGGPGT-LAQSIKAVAPG-GVISLIGFLS  262 (336)
T ss_pred             EEEEeCCHHHHHHHHHcCCCEEEcCCc--ccCHHHHHHHHcCCCCCcEEEECCChHH-HHHHHHhhcCC-CEEEEEccCC
Confidence            999999999999998899998887653  24577788888887 9999999998765 88999999998 9999998653


Q ss_pred             CCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEEEE
Q 020435          246 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  323 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~vv~  323 (326)
                      .. ........++.+++++.+...+.   .+.+++++++++++.+.+.  .++.+++++++++++.+.+++.. |++++
T Consensus       263 ~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  335 (336)
T cd08276         263 GF-EAPVLLLPLLTKGATLRGIAVGS---RAQFEAMNRAIEAHRIRPV--IDRVFPFEEAKEAYRYLESGSHFGKVVIR  335 (336)
T ss_pred             CC-ccCcCHHHHhhcceEEEEEecCc---HHHHHHHHHHHHcCCcccc--cCcEEeHHHHHHHHHHHHhCCCCceEEEe
Confidence            22 22344556677899998886543   3578889999988866543  55889999999999999887665 88875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.98  E-value=1.6e-30  Score=236.97  Aligned_cols=263  Identities=22%  Similarity=0.282  Sum_probs=216.1

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++++.+++||+|+..                              ..+|            
T Consensus        56 ~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~------------------------------~~~g------------   93 (334)
T PTZ00354         56 PGSSEILGLEVAGYVEDVGSDVKRFKEGDRVMAL------------------------------LPGG------------   93 (334)
T ss_pred             CCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEe------------------------------cCCC------------
Confidence            3457799999999999999999999999999642                              1123            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                             ++++|++++.+.++++|+++++++++.+.+++.|||+++.+..+++++++|||+|+ |++|++++++|++.|+
T Consensus        94 -------~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~  166 (334)
T PTZ00354         94 -------GYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA  166 (334)
T ss_pred             -------ceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC
Confidence                   89999999999999999999999999999999999998877788999999999986 9999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCcc-HHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS-VSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~-~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                       +++.+.+++++.+.++++|++++++...   .+ +.+.+++.+++ ++|++|||.++.. +..++++++++ |+++.++
T Consensus       167 -~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~-g~~i~~~  240 (334)
T PTZ00354        167 -ATIITTSSEEKVDFCKKLAAIILIRYPD---EEGFAPKVKKLTGEKGVNLVLDCVGGSY-LSETAEVLAVD-GKWIVYG  240 (334)
T ss_pred             -EEEEEeCCHHHHHHHHHcCCcEEEecCC---hhHHHHHHHHHhCCCCceEEEECCchHH-HHHHHHHhccC-CeEEEEe
Confidence             7788888999999999999998998765   44 77788888877 9999999998765 88999999998 9999998


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCCC--C-----CCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcC
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA--K-----SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  315 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~-----~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~  315 (326)
                      ...+.....++...++.+++++.++.......  +     +.++.++++++++.++.  .+.+.+++++++++++.+.++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~  318 (334)
T PTZ00354        241 FMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKP--IVDRTYPLEEVAEAHTFLEQN  318 (334)
T ss_pred             cCCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccC--ccccEEcHHHHHHHHHHHHhC
Confidence            64322211266566666677888876443211  0     12467788998987654  366889999999999999887


Q ss_pred             cee-EEEEEeC
Q 020435          316 KCL-RCVIWMG  325 (326)
Q Consensus       316 ~~~-k~vv~~~  325 (326)
                      +.. |+++++.
T Consensus       319 ~~~~kvvv~~~  329 (334)
T PTZ00354        319 KNIGKVVLTVN  329 (334)
T ss_pred             CCCceEEEecC
Confidence            655 9998765

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=1.4e-30  Score=230.04  Aligned_cols=243  Identities=31%  Similarity=0.468  Sum_probs=202.9

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++++.|++||+|+..+..+|+.|.+|+.    .|.....   .+....|            
T Consensus        27 ~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~g------------   87 (271)
T cd05188          27 PKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCPGGGI---LGEGLDG------------   87 (271)
T ss_pred             CCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCCCCCE---eccccCC------------
Confidence            45688999999999999999999999999999999999999999996    6655543   3444445            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                             ++++|+.++.+.++++|+++++++++.+++++.|||+++.....+.++++|||+|+|++|++++++++..|. 
T Consensus        88 -------~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~-  159 (271)
T cd05188          88 -------GFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGA-  159 (271)
T ss_pred             -------cceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-
Confidence                   999999999999999999999999999999999999987777777899999999985599999999999998 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +|+++++++++.+.++++|++++++..+   .++.+.+. ...+ ++|++|++++.......++++++++ |+++.++..
T Consensus       160 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~-~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~~~~  234 (271)
T cd05188         160 RVIVTDRSDEKLELAKELGADHVIDYKE---EDLEEELR-LTGGGGADVVIDAVGGPETLAQALRLLRPG-GRIVVVGGT  234 (271)
T ss_pred             eEEEEcCCHHHHHHHHHhCCceeccCCc---CCHHHHHH-HhcCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEEccC
Confidence            9999999999999999999988888776   66666666 5555 9999999999945588999999998 999999875


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHH
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKR  284 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  284 (326)
                      ...... ......+.+++++.++....   .+++++++++
T Consensus       235 ~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  270 (271)
T cd05188         235 SGGPPL-DDLRRLLFKELTIIGSTGGT---REDFEEALDL  270 (271)
T ss_pred             CCCCCc-ccHHHHHhcceEEEEeecCC---HHHHHHHHhh
Confidence            433222 22345567899999886543   3467777765

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.98  E-value=2.2e-30  Score=236.63  Aligned_cols=261  Identities=17%  Similarity=0.165  Sum_probs=205.3

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCc
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE   83 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~   83 (326)
                      +...+|.++|+|++|+|+++|+++++|++||+|+...                           +....|          
T Consensus        54 ~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~---------------------------~~~~~g----------   96 (336)
T TIGR02817        54 PEAGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAG---------------------------DIDRPG----------   96 (336)
T ss_pred             CCCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcC---------------------------CCCCCC----------
Confidence            3445788999999999999999999999999996521                           011123          


Q ss_pred             ccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCC-----CCEEEEEcc-CHHHHHHHH
Q 020435           84 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAE  157 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~-----~~~vlI~Ga-g~~G~~a~~  157 (326)
                               +|++|++++++.++++|+++++++++.+++.+.|||+++....++++     +++|||+|+ |++|++++|
T Consensus        97 ---------~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~  167 (336)
T TIGR02817        97 ---------SNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQ  167 (336)
T ss_pred             ---------cccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHH
Confidence                     99999999999999999999999999999999999998878888877     999999986 999999999


Q ss_pred             HHHHc-CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCc
Q 020435          158 GARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG  236 (326)
Q Consensus       158 la~~~-g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G  236 (326)
                      +|+.+ |+ +|+++++++++.+.++++|+++++++..    ++.+.+++..++++|+++|+.++.......+++++++ |
T Consensus       168 ~ak~~~G~-~vi~~~~~~~~~~~l~~~g~~~~~~~~~----~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-G  241 (336)
T TIGR02817       168 LARQLTGL-TVIATASRPESQEWVLELGAHHVIDHSK----PLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQ-G  241 (336)
T ss_pred             HHHHhCCC-EEEEEcCcHHHHHHHHHcCCCEEEECCC----CHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccC-C
Confidence            99998 99 9999999999999999999999998643    5677777754449999999987666588999999998 9


Q ss_pred             EEEEeccCCCCCcccccHHHHHhcCCEEEeeecc--CCCC-------CCCHHHHHHHHhCCCCCCCcceeeee---cccc
Q 020435          237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG--GLKA-------KSDIPILLKRYMDKELELDKFVTHEM---KFEE  304 (326)
Q Consensus       237 ~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-------~~~~~~~~~l~~~g~~~~~~~i~~~~---~l~~  304 (326)
                      +++.++..     ..++...+..++.++.+....  ....       .+.++++++++.++.+++.  +.+.+   ++++
T Consensus       242 ~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~  314 (336)
T TIGR02817       242 RFALIDDP-----AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTT--LAETFGTINAAN  314 (336)
T ss_pred             EEEEEccc-----ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeecc--chhccCCCCHHH
Confidence            99988532     233333344444665543222  1100       1246788999999976543  33444   4689


Q ss_pred             HHHHHHHHHcCcee-EEEEE
Q 020435          305 INSAFDLLIKGKCL-RCVIW  323 (326)
Q Consensus       305 i~~a~~~~~~~~~~-k~vv~  323 (326)
                      +++|++.+.+++.. |+++.
T Consensus       315 ~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       315 LKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             HHHHHHHHHcCCccceEEEe
Confidence            99999999988765 87764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.98  E-value=2.4e-30  Score=234.88  Aligned_cols=260  Identities=20%  Similarity=0.260  Sum_probs=218.8

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      +.+|.++|||++|+|+.+|++++++++||+|++.+.                              +             
T Consensus        54 ~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~------------------------------~-------------   90 (323)
T cd05282          54 PPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG------------------------------E-------------   90 (323)
T ss_pred             CCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC------------------------------C-------------
Confidence            356789999999999999999999999999976421                              2             


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                            |+|++|+.++...++++|+++++++++.+++.+.+||+++.....+.++++|||+|+ |.+|++++++|+++|+
T Consensus        91 ------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~  164 (323)
T cd05282          91 ------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF  164 (323)
T ss_pred             ------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC
Confidence                  389999999999999999999999999998899999998878788899999999987 8999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +++++.+++++.+.++++|++++++..+   .++.+.+++.+++ ++|++|||.++.. ....+++++++ |+++.+|.
T Consensus       165 -~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~-g~~v~~g~  238 (323)
T cd05282         165 -KTINVVRRDEQVEELKALGADEVIDSSP---EDLAQRVKEATGGAGARLALDAVGGES-ATRLARSLRPG-GTLVNYGL  238 (323)
T ss_pred             -eEEEEecChHHHHHHHhcCCCEEecccc---hhHHHHHHHHhcCCCceEEEECCCCHH-HHHHHHhhCCC-CEEEEEcc
Confidence             8999999999999999999999998876   6788888888887 9999999999987 67889999998 99999987


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCC-------CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  316 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~  316 (326)
                      .... ...++...+..++.++.+........       .+.++.+++++.++.+.+.  +.+.|+++++++|++.+.+++
T Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~  315 (323)
T cd05282         239 LSGE-PVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTP--VGAKFPLEDFEEAVAAAEQPG  315 (323)
T ss_pred             CCCC-CCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccC--ccceecHHHHHHHHHHHhcCC
Confidence            5432 34555555554788888876544321       1247778899999976543  568899999999999998876


Q ss_pred             ee-EEEEE
Q 020435          317 CL-RCVIW  323 (326)
Q Consensus       317 ~~-k~vv~  323 (326)
                      .. |++++
T Consensus       316 ~~~kvv~~  323 (323)
T cd05282         316 RGGKVLLT  323 (323)
T ss_pred             CCceEeeC
Confidence            65 87763

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=7.9e-30  Score=230.36  Aligned_cols=256  Identities=25%  Similarity=0.364  Sum_probs=210.8

Q ss_pred             CCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccccc
Q 020435            8 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHH   87 (326)
Q Consensus         8 ~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~   87 (326)
                      +|.++|||++|+|+++|++++++++||+|+...                               .               
T Consensus        51 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~-------------------------------~---------------   84 (312)
T cd08269          51 EPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS-------------------------------G---------------   84 (312)
T ss_pred             CCcccceeeEEEEEEECCCCcCCCCCCEEEEec-------------------------------C---------------
Confidence            588999999999999999999999999997531                               1               


Q ss_pred             ccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCE-
Q 020435           88 FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR-  166 (326)
Q Consensus        88 ~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~-  166 (326)
                          |+|++|+.++++.++++|+++  ..++....++++|++++. ..+++++++|||+|+|.+|++++++|+..|+ + 
T Consensus        85 ----g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~-~~  156 (312)
T cd08269          85 ----GAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGA-RR  156 (312)
T ss_pred             ----CcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cE
Confidence                389999999999999999998  233332367889998764 7889999999999889999999999999999 6 


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+++.+++++.++++++|++++++...   .++.+.+++++++ ++|+++||.|........+++++++ |+++.+|...
T Consensus       157 v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-g~~~~~g~~~  232 (312)
T cd08269         157 VIAIDRRPARLALARELGATEVVTDDS---EAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQ  232 (312)
T ss_pred             EEEECCCHHHHHHHHHhCCceEecCCC---cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCC
Confidence            999999999999989999999998766   7788889888877 9999999998776688999999998 9999998653


Q ss_pred             CCCcccccHHHHHhcCCEEEeeeccCC-CCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce--eEEEE
Q 020435          246 PGSQLSLSSFEVLHSGKILMGSLFGGL-KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCVI  322 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~--~k~vv  322 (326)
                       .....+++..+..+++.+.++..... ...+.+++++++++++.+.+...+.+.|++++++++++.+.+++.  +|+++
T Consensus       233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         233 -DGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI  311 (312)
T ss_pred             -CCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence             33345555556667888777643322 123578899999999987764445688999999999999998864  58876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.97  E-value=4e-30  Score=235.44  Aligned_cols=260  Identities=22%  Similarity=0.264  Sum_probs=213.5

Q ss_pred             CCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccccc
Q 020435            8 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHH   87 (326)
Q Consensus         8 ~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~   87 (326)
                      +|.++|||++|+|+++|++++.+++||+|++...                             ..               
T Consensus        63 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----------------------------~~---------------   98 (341)
T cd08290          63 PPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRP-----------------------------GL---------------   98 (341)
T ss_pred             CCCCCCcceEEEEEEeCCCCCCCCCCCEEEecCC-----------------------------CC---------------
Confidence            6789999999999999999999999999975321                             12               


Q ss_pred             ccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCE
Q 020435           88 FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATR  166 (326)
Q Consensus        88 ~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~  166 (326)
                          |+|++|+.++.+.++++|+++++++++++++.++|||+++.....++++++|||+|+ |++|++++|+|++.|+ +
T Consensus        99 ----g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~  173 (341)
T cd08290          99 ----GTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-K  173 (341)
T ss_pred             ----ccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-e
Confidence                399999999999999999999999999999999999998877788999999999987 9999999999999999 8


Q ss_pred             EEEEcCCh----hHHHHHHhcCCcEEEcCCCCCCc---cHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          167 IIGVDVIS----EKFEIGKRFGVTEFVNSKNCGDK---SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       167 V~~~~~~~----~~~~~~~~~g~~~vi~~~~~~~~---~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      |++++.++    ++.+.++++|++++++..+   .   ++.+.++..+++++|++|||.|+.. +...+++++++ |+++
T Consensus       174 v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~-G~~v  248 (341)
T cd08290         174 TINVVRDRPDLEELKERLKALGADHVLTEEE---LRSLLATELLKSAPGGRPKLALNCVGGKS-ATELARLLSPG-GTMV  248 (341)
T ss_pred             EEEEEcCCCcchhHHHHHHhcCCCEEEeCcc---cccccHHHHHHHHcCCCceEEEECcCcHh-HHHHHHHhCCC-CEEE
Confidence            88888766    6678888899999998776   4   6777777776558999999999987 77899999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCC-------CCCHHHHHHHHhCCCCCCCcceeeee---ccccHHHHH
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-------KSDIPILLKRYMDKELELDKFVTHEM---KFEEINSAF  309 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~i~~~~---~l~~i~~a~  309 (326)
                      .++.... ....++...++.++.++.+........       ...+..+++++.++.+.+.  ....+   +++++++++
T Consensus       249 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~  325 (341)
T cd08290         249 TYGGMSG-QPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAP--PVEKVTDDPLEEFKDAL  325 (341)
T ss_pred             EEeccCC-CCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCC--cccccccCCHHHHHHHH
Confidence            9986432 233455545567788888876433210       1147788999999977654  33566   999999999


Q ss_pred             HHHHcCcee-EEEEEe
Q 020435          310 DLLIKGKCL-RCVIWM  324 (326)
Q Consensus       310 ~~~~~~~~~-k~vv~~  324 (326)
                      +.+.+++.. |+++.+
T Consensus       326 ~~~~~~~~~~k~v~~~  341 (341)
T cd08290         326 ANALKGGGGGKQVLVM  341 (341)
T ss_pred             HHHhhcCCCCeEEEeC
Confidence            999887765 888763

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.97  E-value=2.4e-30  Score=235.52  Aligned_cols=268  Identities=16%  Similarity=0.229  Sum_probs=212.1

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      .++...+|.++|||++|+|+.+|++++.+++||+|+...                             ...         
T Consensus        51 ~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~-----------------------------~~~---------   92 (327)
T PRK10754         51 LYPPPSLPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQ-----------------------------SAL---------   92 (327)
T ss_pred             CCCCCCCCCccCcceEEEEEEeCCCCCCCCCCCEEEECC-----------------------------CCC---------
Confidence            344455788999999999999999999999999996421                             011         


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGAR  160 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~  160 (326)
                                |+|++|+.++.+.++++|+++++++++.+++.+.+||.++.+..+++++++|+|+|+ |.+|++++++|+
T Consensus        93 ----------g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak  162 (327)
T PRK10754         93 ----------GAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAK  162 (327)
T ss_pred             ----------cceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHH
Confidence                      389999999999999999999999999988899999998877788999999999975 999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      ..|+ +|++++.++++.+.++++|++++++.++   .++.+.+++.+++ ++|++|||.++.. ....+++++++ |+++
T Consensus       163 ~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v  236 (327)
T PRK10754        163 ALGA-KLIGTVGSAQKAQRAKKAGAWQVINYRE---ENIVERVKEITGGKKVRVVYDSVGKDT-WEASLDCLQRR-GLMV  236 (327)
T ss_pred             HcCC-EEEEEeCCHHHHHHHHHCCCCEEEcCCC---CcHHHHHHHHcCCCCeEEEEECCcHHH-HHHHHHHhccC-CEEE
Confidence            9999 8999999999999999999999998877   7788889998887 9999999999866 88899999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEE-Eeeec-cCCCCCC----CHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHH
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKIL-MGSLF-GGLKAKS----DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI  313 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i-~~~~~-~~~~~~~----~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~  313 (326)
                      .+|.... ....+....+..++... ..... +.....+    .++.+++++.+|.+++...+.+.|++++++++++.+.
T Consensus       237 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~  315 (327)
T PRK10754        237 SFGNASG-PVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILE  315 (327)
T ss_pred             EEccCCC-CCCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHH
Confidence            9986532 11223333222222111 11100 0011111    2456789999998876555568999999999999998


Q ss_pred             cCcee-EEEEEe
Q 020435          314 KGKCL-RCVIWM  324 (326)
Q Consensus       314 ~~~~~-k~vv~~  324 (326)
                      +++.. |+++.+
T Consensus       316 ~~~~~~~~~~~~  327 (327)
T PRK10754        316 SRATQGSSLLIP  327 (327)
T ss_pred             cCCCcceEEEeC
Confidence            87765 999863

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=3.1e-30  Score=233.48  Aligned_cols=225  Identities=22%  Similarity=0.323  Sum_probs=177.5

Q ss_pred             ccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhc------ccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           92 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA------NVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        92 g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~------~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                      |+|+||..+|+..++++|+++++++||+++.++.|||.+++...      +.++|++|||+|+ |++|++++|+|++.++
T Consensus       104 g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~  183 (347)
T KOG1198|consen  104 GGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA  183 (347)
T ss_pred             CceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC
Confidence            39999999999999999999999999999999999999999999      9999999999976 8999999999999996


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       ..+++++++++.++++++|+++++|+++   .++.+.+.+.+++++|+||||+|+.. ......++... |+...++..
T Consensus       184 -~~v~t~~s~e~~~l~k~lGAd~vvdy~~---~~~~e~~kk~~~~~~DvVlD~vg~~~-~~~~~~~l~~~-g~~~~i~~~  257 (347)
T KOG1198|consen  184 -IKVVTACSKEKLELVKKLGADEVVDYKD---ENVVELIKKYTGKGVDVVLDCVGGST-LTKSLSCLLKG-GGGAYIGLV  257 (347)
T ss_pred             -cEEEEEcccchHHHHHHcCCcEeecCCC---HHHHHHHHhhcCCCccEEEECCCCCc-cccchhhhccC-CceEEEEec
Confidence             5666666999999999999999999999   99999999999449999999999987 77777788886 764444432


Q ss_pred             CCCCcccccHH----HHHhc---CCEEEee--ec-cCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHc
Q 020435          245 QPGSQLSLSSF----EVLHS---GKILMGS--LF-GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK  314 (326)
Q Consensus       245 ~~~~~~~~~~~----~~~~~---~~~i~~~--~~-~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~  314 (326)
                      . +........    .+...   ...+.+.  +. -.....+.++.+.++++++  ++++.+.++||++++.+|++.+.+
T Consensus       258 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~g--kikp~i~~~~p~~~~~ea~~~~~~  334 (347)
T KOG1198|consen  258 G-DELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKG--KIKPVIDSVYPFSQAKEAFEKLEK  334 (347)
T ss_pred             c-ccccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcC--cccCCcceeeeHHHHHHHHHHHhh
Confidence            2 111111111    01110   1111110  00 0112245688899999999  555668899999999999999999


Q ss_pred             Ccee-EEEEEeC
Q 020435          315 GKCL-RCVIWMG  325 (326)
Q Consensus       315 ~~~~-k~vv~~~  325 (326)
                      +... |+++.++
T Consensus       335 ~~~~GK~vl~~~  346 (347)
T KOG1198|consen  335 SHATGKVVLEKD  346 (347)
T ss_pred             cCCcceEEEEec
Confidence            7765 9999875

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.97  E-value=2.4e-29  Score=214.77  Aligned_cols=263  Identities=21%  Similarity=0.241  Sum_probs=217.4

Q ss_pred             CCCCCCcccCCceeEEEEEe--cCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            4 FPAVFPRILGHEAIGVVESV--GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~--G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      |....|+-+|-..+|.++..  -|+..+|++||.|+..                                          
T Consensus        63 ~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~------------------------------------------  100 (340)
T COG2130          63 PSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV------------------------------------------  100 (340)
T ss_pred             cccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec------------------------------------------
Confidence            34467788888777666653  3567889999999653                                          


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCcc--ccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPN--RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEG  158 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~--~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~l  158 (326)
                                .+|+||..++.+.+.|++++.-+.  ....+.++..|||.++++.+++++|++|+|.|| |++|..+.|+
T Consensus       101 ----------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQi  170 (340)
T COG2130         101 ----------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQI  170 (340)
T ss_pred             ----------ccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHH
Confidence                      179999999999999997653222  233477799999999999999999999999986 9999999999


Q ss_pred             HHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcE
Q 020435          159 ARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK  237 (326)
Q Consensus       159 a~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~  237 (326)
                      ||..|+ +|++++.++||.+++++ +|.|.+||+..   +++.+.+.+..+.|+|+.||++|++. +...+..|+.. ++
T Consensus       171 AKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~---~d~~~~L~~a~P~GIDvyfeNVGg~v-~DAv~~~ln~~-aR  244 (340)
T COG2130         171 AKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA---EDFAQALKEACPKGIDVYFENVGGEV-LDAVLPLLNLF-AR  244 (340)
T ss_pred             HHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc---ccHHHHHHHHCCCCeEEEEEcCCchH-HHHHHHhhccc-cc
Confidence            999999 99999999999999988 99999999999   89999999999999999999999999 99999999998 99


Q ss_pred             EEEeccCCC--CCcc---cccHHHHHhcCCEEEeeeccC-CCC--CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHH
Q 020435          238 TIVLGVDQP--GSQL---SLSSFEVLHSGKILMGSLFGG-LKA--KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF  309 (326)
Q Consensus       238 ~v~~g~~~~--~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~--~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~  309 (326)
                      ++.+|....  ....   .-....++.+++++.|+.+.+ +..  .+..+++.+++.+|++..+.  +-.=.++++++||
T Consensus       245 i~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~e--ti~dGlEnaP~Af  322 (340)
T COG2130         245 IPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRE--TIVDGLENAPEAF  322 (340)
T ss_pred             eeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEe--eehhhhhccHHHH
Confidence            999996432  1111   223344666799999998733 221  24578899999999998885  3344699999999


Q ss_pred             HHHHcCcee-EEEEEeCC
Q 020435          310 DLLIKGKCL-RCVIWMGE  326 (326)
Q Consensus       310 ~~~~~~~~~-k~vv~~~~  326 (326)
                      .-+-++++. |+++++.+
T Consensus       323 ~gLl~G~N~GK~vvKv~~  340 (340)
T COG2130         323 IGLLSGKNFGKLVVKVAD  340 (340)
T ss_pred             HHHhcCCccceEEEEecC
Confidence            999999987 99999864

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=3.8e-29  Score=226.42  Aligned_cols=263  Identities=24%  Similarity=0.335  Sum_probs=207.9

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCc
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE   83 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~   83 (326)
                      +....|.++|||++|+|+++|+  ..+++||+|+.....                        ++...+|          
T Consensus        52 ~~~~~~~~~g~e~~G~v~~vG~--~~~~~Gd~V~~~~~~------------------------~~~~~~g----------   95 (320)
T cd08243          52 PSVKFPRVLGIEAVGEVEEAPG--GTFTPGQRVATAMGG------------------------MGRTFDG----------   95 (320)
T ss_pred             CCCCCCccccceeEEEEEEecC--CCCCCCCEEEEecCC------------------------CCCCCCc----------
Confidence            3345678999999999999995  579999999764210                        1112233          


Q ss_pred             ccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHc
Q 020435           84 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC  162 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~  162 (326)
                               +|++|+.++...++++|+++++++++.+++++.|||+++.+..+++++++|||+|+ |++|++++++|++.
T Consensus        96 ---------~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~  166 (320)
T cd08243          96 ---------SYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKAL  166 (320)
T ss_pred             ---------ccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHc
Confidence                     99999999999999999999999999999999999998888888999999999997 99999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      |+ +|++++.++++.+.++++|++++++. .   .++.+.++++ ++++|+++||.++.. +...+++++++ |+++.+|
T Consensus       167 g~-~v~~~~~~~~~~~~~~~~g~~~~~~~-~---~~~~~~i~~~-~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v~~g  238 (320)
T cd08243         167 GA-TVTATTRSPERAALLKELGADEVVID-D---GAIAEQLRAA-PGGFDKVLELVGTAT-LKDSLRHLRPG-GIVCMTG  238 (320)
T ss_pred             CC-EEEEEeCCHHHHHHHHhcCCcEEEec-C---ccHHHHHHHh-CCCceEEEECCChHH-HHHHHHHhccC-CEEEEEc
Confidence            99 89999999999999999999888754 4   4677778877 449999999999865 88999999998 9999998


Q ss_pred             cCCCCCcc-cccHHHHH--hcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-
Q 020435          243 VDQPGSQL-SLSSFEVL--HSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-  318 (326)
Q Consensus       243 ~~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-  318 (326)
                      ........ ........  .+++++.++..... ....+++++++++++.+++.  ..+.++++++++|++.+.+++.. 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~a~~~~~~~~~~~  315 (320)
T cd08243         239 LLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDV-PQTPLQELFDFVAAGHLDIP--PSKVFTFDEIVEAHAYMESNRAFG  315 (320)
T ss_pred             cCCCCcccCCcchhhhhhhccceEEEecchhhh-hHHHHHHHHHHHHCCceecc--cccEEcHHHHHHHHHHHHhCCCCC
Confidence            64322111 11222222  45666666542221 12357788999999976643  55889999999999999887665 


Q ss_pred             EEEE
Q 020435          319 RCVI  322 (326)
Q Consensus       319 k~vv  322 (326)
                      |+++
T Consensus       316 kvvv  319 (320)
T cd08243         316 KVVV  319 (320)
T ss_pred             cEEe
Confidence            7765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.97  E-value=8.8e-29  Score=220.09  Aligned_cols=250  Identities=27%  Similarity=0.409  Sum_probs=198.4

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      .+| .++|.++|||++|+|+++|++++++++||+|+..                                          
T Consensus        15 ~~~-~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~------------------------------------------   51 (277)
T cd08255          15 TEK-LPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF------------------------------------------   51 (277)
T ss_pred             Ccc-CcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec------------------------------------------
Confidence            345 4499999999999999999999999999999653                                          


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                                +.|++|+.++.+.++++|+++++++++.+ +.++|||+++ ...++++++++||+|+|++|++++++|+.
T Consensus        52 ----------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~  119 (277)
T cd08255          52 ----------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKA  119 (277)
T ss_pred             ----------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence                      16889999999999999999999999888 7899999975 57889999999999889999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcC-CcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          162 CGATRIIGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      +|+.+|+++++++++.+.++++| ++++++..+           ..+.+ ++|++|||.+........+++++++ |+++
T Consensus       120 ~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~~  187 (277)
T cd08255         120 AGAREVVGVDPDAARRELAEALGPADPVAADTA-----------DEIGGRGADVVIEASGSPSALETALRLLRDR-GRVV  187 (277)
T ss_pred             cCCCcEEEECCCHHHHHHHHHcCCCccccccch-----------hhhcCCCCCEEEEccCChHHHHHHHHHhcCC-cEEE
Confidence            99933999999999999989998 555554322           11234 8999999988766688999999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCC---------CCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHH
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL---------KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD  310 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~  310 (326)
                      .+|.....  .......+..+..++.+......         ...+.+++++++++++.++.  .+.+.|+++++++|++
T Consensus       188 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~a~~  263 (277)
T cd08255         188 LVGWYGLK--PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEA--LITHRVPFEDAPEAYR  263 (277)
T ss_pred             EEeccCCC--ccccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCccc--cccCccCHHHHHHHHH
Confidence            99875332  11122233445556666543221         11256899999999997553  3568899999999999


Q ss_pred             HHHcC--ceeEEEE
Q 020435          311 LLIKG--KCLRCVI  322 (326)
Q Consensus       311 ~~~~~--~~~k~vv  322 (326)
                      .+.++  ...|+++
T Consensus       264 ~~~~~~~~~~k~~~  277 (277)
T cd08255         264 LLFEDPPECLKVVL  277 (277)
T ss_pred             HHHcCCccceeeeC
Confidence            99887  4447764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.97  E-value=1e-28  Score=224.94  Aligned_cols=258  Identities=24%  Similarity=0.281  Sum_probs=208.2

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+.+|++++++++||+|++..                               .             
T Consensus        58 ~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~-------------------------------~-------------   93 (329)
T cd08250          58 VKPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATMS-------------------------------F-------------   93 (329)
T ss_pred             CCCCcccCceeEEEEEEECCCCCCCCCCCEEEEec-------------------------------C-------------
Confidence            45789999999999999999999999999997531                               1             


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                            |+|++|++++.+.++++|++  +.+++++++.+.|||+++.+..+++++++|+|+|+ |.+|++++++|+..|+
T Consensus        94 ------g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~  165 (329)
T cd08250          94 ------GAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC  165 (329)
T ss_pred             ------cceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC
Confidence                  38999999999999999997  35677888899999998888888999999999986 9999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       +|+++++++++.+.++++|++.+++.++   .++.+.+.+..++++|++|||.++.. ....+++++++ |+++.+|..
T Consensus       166 -~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~~~vd~v~~~~g~~~-~~~~~~~l~~~-g~~v~~g~~  239 (329)
T cd08250         166 -HVIGTCSSDEKAEFLKSLGCDRPINYKT---EDLGEVLKKEYPKGVDVVYESVGGEM-FDTCVDNLALK-GRLIVIGFI  239 (329)
T ss_pred             -eEEEEeCcHHHHHHHHHcCCceEEeCCC---ccHHHHHHHhcCCCCeEEEECCcHHH-HHHHHHHhccC-CeEEEEecc
Confidence             8999999999999999999988888776   66767776665458999999999755 88999999998 999999864


Q ss_pred             CCC---------CcccccHHHHHhcCCEEEeeeccCCC--CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHH
Q 020435          245 QPG---------SQLSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI  313 (326)
Q Consensus       245 ~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~  313 (326)
                      ...         ....++ ...+.++.++.++......  ..+.+.+++++++++.+.+.....+.++++++++|++.+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~  318 (329)
T cd08250         240 SGYQSGTGPSPVKGATLP-PKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLY  318 (329)
T ss_pred             cCCcccCccccccccccc-HHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHH
Confidence            321         111222 2335567888877533211  1234778899999997766433446689999999999999


Q ss_pred             cCcee-EEEE
Q 020435          314 KGKCL-RCVI  322 (326)
Q Consensus       314 ~~~~~-k~vv  322 (326)
                      +++.. |+++
T Consensus       319 ~~~~~~kvvv  328 (329)
T cd08250         319 SGKNIGKVVV  328 (329)
T ss_pred             cCCCCceEEe
Confidence            87665 8776

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=7.2e-29  Score=223.47  Aligned_cols=250  Identities=20%  Similarity=0.255  Sum_probs=203.4

Q ss_pred             CCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccccc
Q 020435            8 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHH   87 (326)
Q Consensus         8 ~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~   87 (326)
                      .|.++|||++|+|+++|+++++|++||+|+...                              .+               
T Consensus        51 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~------------------------------~~---------------   85 (305)
T cd08270          51 DGAVPGWDAAGVVERAAADGSGPAVGARVVGLG------------------------------AM---------------   85 (305)
T ss_pred             CCCcccceeEEEEEEeCCCCCCCCCCCEEEEec------------------------------CC---------------
Confidence            367899999999999999999999999996421                              12               


Q ss_pred             ccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCE
Q 020435           88 FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATR  166 (326)
Q Consensus        88 ~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~  166 (326)
                          |+|++|+.++.+.++++|+++++++++++++.+.|||+++.+.... ++++|+|+|+ |++|++++++++..|+ +
T Consensus        86 ----g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~  159 (305)
T cd08270          86 ----GAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-H  159 (305)
T ss_pred             ----cceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-E
Confidence                3999999999999999999999999999999999999987655545 5999999987 9999999999999999 8


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  246 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  246 (326)
                      |+.+++++++.+.++++|++.+++...    +       +.++++|+++||.|+.. ...++++++.+ |+++.+|... 
T Consensus       160 v~~~~~~~~~~~~~~~~g~~~~~~~~~----~-------~~~~~~d~vl~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~-  225 (305)
T cd08270         160 VVAVVGSPARAEGLRELGAAEVVVGGS----E-------LSGAPVDLVVDSVGGPQ-LARALELLAPG-GTVVSVGSSS-  225 (305)
T ss_pred             EEEEeCCHHHHHHHHHcCCcEEEeccc----c-------ccCCCceEEEECCCcHH-HHHHHHHhcCC-CEEEEEeccC-
Confidence            999999999999999999876654322    1       22247999999999876 89999999998 9999998653 


Q ss_pred             CCcccccHHHHHh--cCCEEEeeeccC-CCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEEE
Q 020435          247 GSQLSLSSFEVLH--SGKILMGSLFGG-LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  322 (326)
Q Consensus       247 ~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~vv  322 (326)
                      .....++...+..  ++.++.++.... ....+.+..++++++++++++.  +.+.+++++++++++.+.+++.. |+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi  303 (305)
T cd08270         226 GEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDPR--IGWRGSWTEIDEAAEALLARRFRGKAVL  303 (305)
T ss_pred             CCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCccce--eccEEcHHHHHHHHHHHHcCCCCceEEE
Confidence            2334445554444  578888776542 1112457888999999988754  66899999999999999887765 9888


Q ss_pred             Ee
Q 020435          323 WM  324 (326)
Q Consensus       323 ~~  324 (326)
                      .+
T Consensus       304 ~~  305 (305)
T cd08270         304 DV  305 (305)
T ss_pred             eC
Confidence            64

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.97  E-value=1.5e-28  Score=223.47  Aligned_cols=263  Identities=18%  Similarity=0.224  Sum_probs=199.4

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|++.|  ++++++||+|++.+.                        ..|...+|             
T Consensus        56 ~~~~~~g~e~~G~V~~~~--~~~~~~Gd~V~~~~~------------------------~~~~~~~g-------------   96 (326)
T cd08289          56 RYPFIPGIDLAGTVVESN--DPRFKPGDEVIVTSY------------------------DLGVSHHG-------------   96 (326)
T ss_pred             CCCcCcccceeEEEEEcC--CCCCCCCCEEEEccc------------------------ccCCCCCC-------------
Confidence            458999999999999954  578999999976432                        02222334             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhc--c-cCCCCEEEEEcc-CHHHHHHHHHHHHc
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA--N-VEVGSTVVIFGL-GSIGLAVAEGARLC  162 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~--~-~~~~~~vlI~Ga-g~~G~~a~~la~~~  162 (326)
                            +|++|+.++++.++++|+++++++++.+++.+.|||+++....  . ...+++|||+|+ |.+|++++|+|++.
T Consensus        97 ------~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~  170 (326)
T cd08289          97 ------GYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKL  170 (326)
T ss_pred             ------cceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHC
Confidence                  9999999999999999999999999999999999998765432  2 334789999997 99999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      |+ +|+++++++++.+.++++|++++++.++   . ..+.+++..++++|++|||.++.. +...+++++++ |+++.+|
T Consensus       171 g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~-~~~~~~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~-G~~i~~g  243 (326)
T cd08289         171 GY-EVVASTGKADAADYLKKLGAKEVIPREE---L-QEESIKPLEKQRWAGAVDPVGGKT-LAYLLSTLQYG-GSVAVSG  243 (326)
T ss_pred             CC-eEEEEecCHHHHHHHHHcCCCEEEcchh---H-HHHHHHhhccCCcCEEEECCcHHH-HHHHHHHhhcC-CEEEEEe
Confidence            99 8999999999999999999999988765   3 345566664348999999999865 88999999998 9999999


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCC---CCcceeeeeccccHHHHHHHHHcCcee-
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE---LDKFVTHEMKFEEINSAFDLLIKGKCL-  318 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~---~~~~i~~~~~l~~i~~a~~~~~~~~~~-  318 (326)
                      ... ....++....++.+++++.+....... ......+++.+.+ .+.   ....+.+.|+++++++|++.+.+++.. 
T Consensus       244 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~g  320 (326)
T cd08289         244 LTG-GGEVETTVFPFILRGVNLLGIDSVECP-MELRRRIWRRLAT-DLKPTQLLNEIKQEITLDELPEALKQILQGRVTG  320 (326)
T ss_pred             ecC-CCCCCcchhhhhhccceEEEEEeEecC-chHHHHHHHHHHh-hcCccccccccceEeeHHHHHHHHHHHhcCcccc
Confidence            752 223344455555778888887432110 1112223322221 111   112346899999999999999988776 


Q ss_pred             EEEEEe
Q 020435          319 RCVIWM  324 (326)
Q Consensus       319 k~vv~~  324 (326)
                      |+++++
T Consensus       321 kvvv~~  326 (326)
T cd08289         321 RTVVKL  326 (326)
T ss_pred             eEEEeC
Confidence            888763

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.97  E-value=2.5e-28  Score=221.88  Aligned_cols=261  Identities=20%  Similarity=0.213  Sum_probs=200.4

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++  +++.+++||+|++...                        .+|+..+|             
T Consensus        56 ~~~~~~g~e~~G~v~~~--~~~~~~~Gd~V~~~~~------------------------~~g~~~~g-------------   96 (325)
T cd05280          56 NYPHTPGIDAAGTVVSS--DDPRFREGDEVLVTGY------------------------DLGMNTDG-------------   96 (325)
T ss_pred             CCCCccCcccEEEEEEe--CCCCCCCCCEEEEccc------------------------ccCCCCCc-------------
Confidence            46889999999999999  4678999999976421                        03444445             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcc--cC-CCCEEEEEcc-CHHHHHHHHHHHHc
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN--VE-VGSTVVIFGL-GSIGLAVAEGARLC  162 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~--~~-~~~~vlI~Ga-g~~G~~a~~la~~~  162 (326)
                            +|++|++++++.++++|+++++++++.+++.+.|||+++....+  +. .+++|+|+|+ |.+|++++++|+.+
T Consensus        97 ------~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~  170 (325)
T cd05280          97 ------GFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKL  170 (325)
T ss_pred             ------eeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHc
Confidence                  99999999999999999999999999999999999998755443  35 3579999997 99999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      |+ +|+++++++++.+.++++|++++++..+   .  ...+.+...+ ++|++|||.++.. +..++++++++ |+++.+
T Consensus       171 g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~--~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-g~~v~~  242 (325)
T cd05280         171 GY-TVVALTGKEEQADYLKSLGASEVLDRED---L--LDESKKPLLKARWAGAIDTVGGDV-LANLLKQTKYG-GVVASC  242 (325)
T ss_pred             CC-EEEEEeCCHHHHHHHHhcCCcEEEcchh---H--HHHHHHHhcCCCccEEEECCchHH-HHHHHHhhcCC-CEEEEE
Confidence            99 8999999999999999999999987654   2  2233333444 8999999999866 89999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCC---CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      |..... ...++...++.+++++.+........   .+.++.+.+++..+..   ..+...|++++++++++.+.+++..
T Consensus       243 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~  318 (325)
T cd05280         243 GNAAGP-ELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDLL---EIVVREISLEELPEAIDRLLAGKHR  318 (325)
T ss_pred             ecCCCC-ccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCCc---cceeeEecHHHHHHHHHHHhcCCcc
Confidence            875322 22444444546788888875443211   0123334445555522   2366899999999999999988766


Q ss_pred             -EEEEEe
Q 020435          319 -RCVIWM  324 (326)
Q Consensus       319 -k~vv~~  324 (326)
                       |+++++
T Consensus       319 gk~vv~~  325 (325)
T cd05280         319 GRTVVKI  325 (325)
T ss_pred             eEEEEeC
Confidence             888763

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=3.8e-28  Score=219.21  Aligned_cols=260  Identities=22%  Similarity=0.304  Sum_probs=214.4

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+.+|++++++++||+|+...                              ..              
T Consensus        53 ~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~------------------------------~~--------------   88 (320)
T cd05286          53 PLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAG------------------------------PP--------------   88 (320)
T ss_pred             CCCccCCcceeEEEEEECCCCCCCCCCCEEEEec------------------------------CC--------------
Confidence            4577999999999999999999999999996531                              11              


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT  165 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~  165 (326)
                           |++++|+.++.+.++++|++++.++++.+.+.+.++|+++.+..++.++++|||+|+ |++|++++++++.+|+ 
T Consensus        89 -----g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-  162 (320)
T cd05286          89 -----GAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-  162 (320)
T ss_pred             -----CceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-
Confidence                 389999999999999999999999999999999999998878888999999999996 9999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +|++++.++++.+.++++|++++++..+   .++.+.+++++.+ ++|++|||.++.. ...++++++++ |+++.+|..
T Consensus       163 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v~~g~~  237 (320)
T cd05286         163 TVIGTVSSEEKAELARAAGADHVINYRD---EDFVERVREITGGRGVDVVYDGVGKDT-FEGSLDSLRPR-GTLVSFGNA  237 (320)
T ss_pred             EEEEEcCCHHHHHHHHHCCCCEEEeCCc---hhHHHHHHHHcCCCCeeEEEECCCcHh-HHHHHHhhccC-cEEEEEecC
Confidence            8999999999999999999999988776   6788888888877 9999999999865 88999999998 999999864


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCC-----CCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAK-----SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-  318 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-  318 (326)
                      ... ...++...+..+++++.+.........     +.+.++++++.++.+++.  ..+.|++++++++++.+.++... 
T Consensus       238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~  314 (320)
T cd05286         238 SGP-VPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVE--IGKRYPLADAAQAHRDLESRKTTG  314 (320)
T ss_pred             CCC-CCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCc--ccceEcHHHHHHHHHHHHcCCCCc
Confidence            322 233444444467888766543322111     224568888988876654  55889999999999999987765 


Q ss_pred             EEEEEe
Q 020435          319 RCVIWM  324 (326)
Q Consensus       319 k~vv~~  324 (326)
                      |+++++
T Consensus       315 ~vv~~~  320 (320)
T cd05286         315 KLLLIP  320 (320)
T ss_pred             eEEEeC
Confidence            888764

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.97  E-value=4.1e-28  Score=222.11  Aligned_cols=261  Identities=23%  Similarity=0.320  Sum_probs=204.8

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+.+|++++.+++||+|+..+...|+                      +...+              
T Consensus        53 ~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~----------------------~~~~~--------------   96 (339)
T cd08249          53 SYPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNP----------------------NDPRN--------------   96 (339)
T ss_pred             CCCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEeccccC----------------------CCCCC--------------
Confidence            357899999999999999999999999999875432221                      11122              


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhccc----------CCCCEEEEEcc-CHHHHHH
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANV----------EVGSTVVIFGL-GSIGLAV  155 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~----------~~~~~vlI~Ga-g~~G~~a  155 (326)
                           |+|++|++++.+.++++|+++++++++++++.+.|||+++.+..++          .++++|||+|+ |.+|+++
T Consensus        97 -----g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~  171 (339)
T cd08249          97 -----GAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLA  171 (339)
T ss_pred             -----CcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHH
Confidence                 3999999999999999999999999999999999999987666544          78999999997 8999999


Q ss_pred             HHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhc--
Q 020435          156 AEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK--  233 (326)
Q Consensus       156 ~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~--  233 (326)
                      +++|++.|+ +|+.+. ++++.+.++++|++++++..+   .++.+.+++.+++++|++||+.+++..+..+++++++  
T Consensus       172 ~~~a~~~G~-~v~~~~-~~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~  246 (339)
T cd08249         172 IQLAKLAGY-KVITTA-SPKNFDLVKSLGADAVFDYHD---PDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSG  246 (339)
T ss_pred             HHHHHHcCC-eEEEEE-CcccHHHHHhcCCCEEEECCC---chHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccC
Confidence            999999999 888887 568888889999999999877   7788888887766999999999985558999999999  


Q ss_pred             CCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCC---------CCCCCHHHHHHHHhCCCCCCCcceeeeec--c
Q 020435          234 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL---------KAKSDIPILLKRYMDKELELDKFVTHEMK--F  302 (326)
Q Consensus       234 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~~~g~~~~~~~i~~~~~--l  302 (326)
                      + |+++.++......  .+      ..+...........         .....++.++++++++.+.+.  ....++  +
T Consensus       247 ~-g~~v~~g~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~  315 (339)
T cd08249         247 G-GKLVSLLPVPEET--EP------RKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPH--PVRVVEGGL  315 (339)
T ss_pred             C-CEEEEecCCCccc--cC------CCCceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCC--CceecCCcH
Confidence            9 9999998653221  01      11122111111100         011246678899999987765  235667  9


Q ss_pred             ccHHHHHHHHHcCc-ee-EEEEEe
Q 020435          303 EEINSAFDLLIKGK-CL-RCVIWM  324 (326)
Q Consensus       303 ~~i~~a~~~~~~~~-~~-k~vv~~  324 (326)
                      +++++|++.+.+++ .. |+++++
T Consensus       316 ~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         316 EGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             HHHHHHHHHHHCCCccceEEEEeC
Confidence            99999999999888 65 998863

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.96  E-value=1e-27  Score=217.88  Aligned_cols=261  Identities=20%  Similarity=0.222  Sum_probs=202.2

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+.  .++++|++||+|++...                        ..|....|            
T Consensus        54 ~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~~------------------------~~~~~~~g------------   95 (323)
T TIGR02823        54 RSYPMIPGIDAAGTVVS--SEDPRFREGDEVIVTGY------------------------GLGVSHDG------------   95 (323)
T ss_pred             CCCCccceeeeEEEEEe--cCCCCCCCCCEEEEccC------------------------CCCCCCCc------------
Confidence            35689999999999998  56778999999976421                        02222234            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhh--hcccCCCC-EEEEEcc-CHHHHHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGS-TVVIFGL-GSIGLAVAEGARL  161 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~--~~~~~~~~-~vlI~Ga-g~~G~~a~~la~~  161 (326)
                             ++++|+.++.+.++++|+++++++++++++.+.+|+.++..  ..++.+++ +|+|+|+ |++|++++++|++
T Consensus        96 -------~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~  168 (323)
T TIGR02823        96 -------GYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSK  168 (323)
T ss_pred             -------cceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHH
Confidence                   99999999999999999999999999999999999887543  33478898 9999997 9999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +|+ ++++++.++++.+.++++|++++++.++   .+.  .++.+.++++|+++||.|+.. +..++++++++ |+++.+
T Consensus       169 ~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~-G~~v~~  240 (323)
T TIGR02823       169 LGY-EVVASTGKAEEEDYLKELGASEVIDRED---LSP--PGKPLEKERWAGAVDTVGGHT-LANVLAQLKYG-GAVAAC  240 (323)
T ss_pred             cCC-eEEEEeCCHHHHHHHHhcCCcEEEcccc---HHH--HHHHhcCCCceEEEECccHHH-HHHHHHHhCCC-CEEEEE
Confidence            999 8888888888889999999988888654   332  445555447999999999876 88999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCC---CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      |... .....++...++.++.++.+........   .+.++.+.+++..+.+..  . .+.|+++++++|++.+.+++..
T Consensus       241 g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~~~a~~~~~~~~~~  316 (323)
T TIGR02823       241 GLAG-GPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLES--I-TREITLEELPEALEQILAGQHR  316 (323)
T ss_pred             cccC-CCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCcC--c-eeeecHHHHHHHHHHHhCCCcc
Confidence            8753 2233444455556788888865332111   012455666777775543  3 4689999999999999988776


Q ss_pred             -EEEEE
Q 020435          319 -RCVIW  323 (326)
Q Consensus       319 -k~vv~  323 (326)
                       |++++
T Consensus       317 ~k~vv~  322 (323)
T TIGR02823       317 GRTVVD  322 (323)
T ss_pred             ceEEEe
Confidence             88875

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.96  E-value=1.1e-27  Score=218.64  Aligned_cols=261  Identities=20%  Similarity=0.177  Sum_probs=207.2

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+.+|++++.+++||+|.....                           +..+|            
T Consensus        57 ~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---------------------------~~~~g------------   97 (336)
T cd08252          57 PGQPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGD---------------------------ITRPG------------   97 (336)
T ss_pred             CCCCcccccceEEEEEEcCCCCCCCCCCCEEEEcCC---------------------------CCCCc------------
Confidence            346789999999999999999999999999975210                           11223            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCC-----CCEEEEEcc-CHHHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAEGA  159 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~-----~~~vlI~Ga-g~~G~~a~~la  159 (326)
                             +|++|+.++...++++|+++++++++.+++.+.|||+++.+.+++.+     +++|+|+|+ |++|++++++|
T Consensus        98 -------~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a  170 (336)
T cd08252          98 -------SNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLA  170 (336)
T ss_pred             -------cceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHH
Confidence                   89999999999999999999999999999999999998878888887     999999986 99999999999


Q ss_pred             HHcC-CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          160 RLCG-ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       160 ~~~g-~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      +.+| + +|++++.++++.+.++++|++++++...    ++.+.++...++++|++|||.+....+..++++++++ |++
T Consensus       171 ~~~G~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~  244 (336)
T cd08252         171 KQLTGL-TVIATASRPESIAWVKELGADHVINHHQ----DLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQ-GHI  244 (336)
T ss_pred             HHcCCc-EEEEEcCChhhHHHHHhcCCcEEEeCCc----cHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCC-CEE
Confidence            9999 8 9999999999999999999999887653    4556666443348999999999766689999999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHhcCCEEEeeeccCCC--C-------CCCHHHHHHHHhCCCCCCCcc-eeeeeccccHHHH
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK--A-------KSDIPILLKRYMDKELELDKF-VTHEMKFEEINSA  308 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~-------~~~~~~~~~l~~~g~~~~~~~-i~~~~~l~~i~~a  308 (326)
                      +.+|...    ..++...+..++.++.+.......  .       .+.++++++++.++.+++... ....++++++++|
T Consensus       245 v~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  320 (336)
T cd08252         245 CLIVDPQ----EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREA  320 (336)
T ss_pred             EEecCCC----CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHH
Confidence            9998642    233444444567777765433210  0       123678899999997764311 1245799999999


Q ss_pred             HHHHHcCcee-EEEE
Q 020435          309 FDLLIKGKCL-RCVI  322 (326)
Q Consensus       309 ~~~~~~~~~~-k~vv  322 (326)
                      ++.+.++... |+++
T Consensus       321 ~~~~~~~~~~~~vv~  335 (336)
T cd08252         321 HALLESGKTIGKIVL  335 (336)
T ss_pred             HHHHHcCCccceEEe
Confidence            9999988765 8775

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08251 polyketide_synthase polyketide synthase

Probab=99.96  E-value=1.2e-27  Score=214.80  Aligned_cols=259  Identities=23%  Similarity=0.313  Sum_probs=206.6

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|+|++|+|+.+|++++++++||+|++...                            ..+              
T Consensus        36 ~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----------------------------~~~--------------   73 (303)
T cd08251          36 PYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG----------------------------ESM--------------   73 (303)
T ss_pred             CCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC----------------------------CCC--------------
Confidence            56889999999999999999999999999976421                            112              


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT  165 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~  165 (326)
                           |+|++|+.++++.++++|+++++++++.+++.+.+||+++ +..+++++++|+|+|+ |.+|++++++++++|+ 
T Consensus        74 -----g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-  146 (303)
T cd08251          74 -----GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-  146 (303)
T ss_pred             -----cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-
Confidence                 3899999999999999999999999999999999999975 6788999999999975 9999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +|+++++++++.+.++.+|++.+++...   .++.+.+.+.+++ ++|+++|++++.. ....+++++++ |+++.++..
T Consensus       147 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~~~~~~~~-~~~~~~~l~~~-g~~v~~~~~  221 (303)
T cd08251         147 EIYATASSDDKLEYLKQLGVPHVINYVE---EDFEEEIMRLTGGRGVDVVINTLSGEA-IQKGLNCLAPG-GRYVEIAMT  221 (303)
T ss_pred             EEEEEcCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHcCCCCceEEEECCcHHH-HHHHHHHhccC-cEEEEEecc
Confidence            8999999999999999999999998876   6788888888887 9999999998755 88899999998 999999864


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCC--C----CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGL--K----AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~----~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      .......+....+. ++..+........  .    ..+.+.+++++++++.++.  ..++.|++++++++++.+.+++..
T Consensus       222 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  298 (303)
T cd08251         222 ALKSAPSVDLSVLS-NNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRP--TVSRIFPFDDIGEAYRYLSDRENI  298 (303)
T ss_pred             CCCccCccChhHhh-cCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccC--CCceEEcHHHHHHHHHHHHhCCCc
Confidence            32222233333322 2333332211110  0    1124667888999997654  356889999999999999887665


Q ss_pred             -EEEE
Q 020435          319 -RCVI  322 (326)
Q Consensus       319 -k~vv  322 (326)
                       |+++
T Consensus       299 ~~iv~  303 (303)
T cd08251         299 GKVVV  303 (303)
T ss_pred             ceEeC
Confidence             7653

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.96  E-value=1.3e-27  Score=216.02  Aligned_cols=259  Identities=21%  Similarity=0.286  Sum_probs=213.4

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+.+|++++.+++||+|+..                              ..+|            
T Consensus        55 ~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~------------------------------~~~g------------   92 (323)
T cd05276          55 PGASDILGLEVAGVVVAVGPGVTGWKVGDRVCAL------------------------------LAGG------------   92 (323)
T ss_pred             CCCCCcccceeEEEEEeeCCCCCCCCCCCEEEEe------------------------------cCCC------------
Confidence            3568899999999999999999999999999653                              1223            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                             +|++|+.++.+.++++|+++++++++.+...+.++|+++.+...+.++++|+|+|+ |++|+++++++++.|+
T Consensus        93 -------~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~  165 (323)
T cd05276          93 -------GYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA  165 (323)
T ss_pred             -------ceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC
Confidence                   89999999999999999999999999999999999998877788999999999997 9999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +|+++++++++.+.++++|++.+++...   .++.+.+.+...+ ++|++||+.++.. ....++++.++ |+++.++.
T Consensus       166 -~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~~~~~-g~~i~~~~  239 (323)
T cd05276         166 -RVIATAGSEEKLEACRALGADVAINYRT---EDFAEEVKEATGGRGVDVILDMVGGDY-LARNLRALAPD-GRLVLIGL  239 (323)
T ss_pred             -EEEEEcCCHHHHHHHHHcCCCEEEeCCc---hhHHHHHHHHhCCCCeEEEEECCchHH-HHHHHHhhccC-CEEEEEec
Confidence             8999999999999898899888888776   6777788887766 9999999999877 88899999998 99999986


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCCC-------CCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK-------SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  316 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~  316 (326)
                      ... ....++...++.+++++.++........       ..+.++++++.++.+.+  ..++.|++++++++++.+.++.
T Consensus       240 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~  316 (323)
T cd05276         240 LGG-AKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRP--VIDKVFPLEEAAEAHRRMESNE  316 (323)
T ss_pred             CCC-CCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHhCC
Confidence            432 2234455555567888888765432111       12466778888887653  3668899999999999998776


Q ss_pred             ee-EEEE
Q 020435          317 CL-RCVI  322 (326)
Q Consensus       317 ~~-k~vv  322 (326)
                      .. |+++
T Consensus       317 ~~~kvv~  323 (323)
T cd05276         317 HIGKIVL  323 (323)
T ss_pred             CcceEeC
Confidence            55 7653

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.96  E-value=2.8e-27  Score=214.17  Aligned_cols=265  Identities=24%  Similarity=0.340  Sum_probs=213.3

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+.+|+++++|++||+|++.++.                        . ....             
T Consensus        55 ~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~~~------------------------~-~~~~-------------   96 (325)
T cd08253          55 PPLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTNLG------------------------W-GRRQ-------------   96 (325)
T ss_pred             CCCCeecccceEEEEEeeCCCCCCCCCCCEEEEeccc------------------------c-CCCC-------------
Confidence            3578899999999999999999999999999775310                        0 0012             


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                            |++++|+.++.+.++++|+++++++++.+++++.+||+++.+..++.++++|+|+|+ |.+|++++++++..|+
T Consensus        97 ------g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~  170 (325)
T cd08253          97 ------GTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA  170 (325)
T ss_pred             ------cceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC
Confidence                  389999999999999999999999999999999999998877789999999999986 9999999999999998


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +|+++++++++.+.++++|++++++...   .++.+.+.+.+.+ ++|+++||.+... ....+++++++ |+++.++.
T Consensus       171 -~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-g~~v~~~~  244 (325)
T cd08253         171 -RVIATASSAEGAELVRQAGADAVFNYRA---EDLADRILAATAGQGVDVIIEVLANVN-LAKDLDVLAPG-GRIVVYGS  244 (325)
T ss_pred             -EEEEEeCCHHHHHHHHHcCCCEEEeCCC---cCHHHHHHHHcCCCceEEEEECCchHH-HHHHHHhhCCC-CEEEEEee
Confidence             8999999999999998899988888776   6777888887776 9999999999876 78889999998 99999987


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCC---CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-E
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLK---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-R  319 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k  319 (326)
                      ..  ....++...++.++.++.+.......   ..+.++.+.+++.++.++.  ..++.+++++++++++.+.++... |
T Consensus       245 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~k  320 (325)
T cd08253         245 GG--LRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRP--VIAREYPLEEAAAAHEAVESGGAIGK  320 (325)
T ss_pred             cC--CcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccC--ccccEEcHHHHHHHHHHHHcCCCcce
Confidence            43  23344444445567777665422111   0112455667777876543  356889999999999999887665 8


Q ss_pred             EEEEe
Q 020435          320 CVIWM  324 (326)
Q Consensus       320 ~vv~~  324 (326)
                      +++++
T Consensus       321 vv~~~  325 (325)
T cd08253         321 VVLDP  325 (325)
T ss_pred             EEEeC
Confidence            88753

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.96  E-value=1.1e-27  Score=218.05  Aligned_cols=253  Identities=21%  Similarity=0.251  Sum_probs=203.7

Q ss_pred             CCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccccc
Q 020435            8 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHH   87 (326)
Q Consensus         8 ~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~   87 (326)
                      .+.++|+|++|+|+++|++  ++++||+|+..                                                
T Consensus        64 ~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~~------------------------------------------------   93 (329)
T cd05288          64 LGEPMRGGGVGEVVESRSP--DFKVGDLVSGF------------------------------------------------   93 (329)
T ss_pred             CCCcccCceEEEEEecCCC--CCCCCCEEecc------------------------------------------------
Confidence            4678999999999999964  79999999542                                                


Q ss_pred             ccccccccceEEecc-cceEEcCCCCC--cccccc-ccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHc
Q 020435           88 FVSVSSFSEYTVLDI-AHVVKVDPTVP--PNRACL-LSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC  162 (326)
Q Consensus        88 ~~~~g~~a~~~~v~~-~~~~~ip~~~s--~~~aa~-l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~  162 (326)
                          ++|++|+.++. +.++++|++++  ++++++ +++++.|||+++.+..++.++++|||+|+ |++|++++++|+..
T Consensus        94 ----~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~  169 (329)
T cd05288          94 ----LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLL  169 (329)
T ss_pred             ----cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHc
Confidence                27999999999 99999999995  445555 88899999998878788999999999985 99999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          163 GATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      |+ +|+++++++++.+.+++ +|++++++.++   .++.+.+.+.+++++|++|||+|... +..++++++++ |+++.+
T Consensus       170 G~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~v~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~  243 (329)
T cd05288         170 GA-RVVGIAGSDEKCRWLVEELGFDAAINYKT---PDLAEALKEAAPDGIDVYFDNVGGEI-LDAALTLLNKG-GRIALC  243 (329)
T ss_pred             CC-EEEEEeCCHHHHHHHHhhcCCceEEecCC---hhHHHHHHHhccCCceEEEEcchHHH-HHHHHHhcCCC-ceEEEE
Confidence            99 89999999999999888 99999998877   67878888777559999999999865 88999999998 999999


Q ss_pred             ccCCCCCcc----cccHHHHHhcCCEEEeeeccCCCC--CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcC
Q 020435          242 GVDQPGSQL----SLSSFEVLHSGKILMGSLFGGLKA--KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  315 (326)
Q Consensus       242 g~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~  315 (326)
                      |........    .++....+.++.++.++.......  .+.+.++++++.++.+++..  ...+++++++++++.+.++
T Consensus       244 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~~~~~l~~~~~a~~~~~~~  321 (329)
T cd05288         244 GAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRE--DVVEGLENAPEAFLGLFTG  321 (329)
T ss_pred             eeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccc--cccccHHHHHHHHHHHhcC
Confidence            864322111    123344456788887765432210  13467788999999877653  3568999999999999877


Q ss_pred             cee-EEEE
Q 020435          316 KCL-RCVI  322 (326)
Q Consensus       316 ~~~-k~vv  322 (326)
                      +.. |+++
T Consensus       322 ~~~gkvvv  329 (329)
T cd05288         322 KNTGKLVV  329 (329)
T ss_pred             CCccceeC
Confidence            655 7653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.96  E-value=2e-27  Score=215.19  Aligned_cols=259  Identities=20%  Similarity=0.249  Sum_probs=214.0

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+.+|+++.++++||+|+...                              .+|             
T Consensus        56 ~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~------------------------------~~~-------------   92 (325)
T TIGR02824        56 GASDILGLEVAGEVVAVGEGVSRWKVGDRVCALV------------------------------AGG-------------   92 (325)
T ss_pred             CCCCCccceeEEEEEEeCCCCCCCCCCCEEEEcc------------------------------CCC-------------
Confidence            4578999999999999999999999999996521                              123             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT  165 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~  165 (326)
                            ++++|+.++...++++|+++++.+++.+++.+.|||+++.+...+.++++++|+|+ |++|++++++++..|+ 
T Consensus        93 ------~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-  165 (325)
T TIGR02824        93 ------GYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-  165 (325)
T ss_pred             ------cceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-
Confidence                  89999999999999999999999999999999999998888899999999999996 9999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +|+++.+++++.+.++.+|++.+++...   .++.+.+.+..++ ++|++++|.++.. ...++++++++ |+++.++..
T Consensus       166 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~-g~~v~~g~~  240 (325)
T TIGR02824       166 RVFTTAGSDEKCAACEALGADIAINYRE---EDFVEVVKAETGGKGVDVILDIVGGSY-LNRNIKALALD-GRIVQIGFQ  240 (325)
T ss_pred             EEEEEeCCHHHHHHHHHcCCcEEEecCc---hhHHHHHHHHcCCCCeEEEEECCchHH-HHHHHHhhccC-cEEEEEecC
Confidence            8999999999888888899888887766   6777788887776 8999999999865 88899999998 999999864


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCC-------CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKA-------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC  317 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~  317 (326)
                      .... ..++...++.+++++.+........       ...+.+++++++++.++.  .+++.+++++++++++.+.++..
T Consensus       241 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~  317 (325)
T TIGR02824       241 GGRK-AELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRP--VIDKVFPLEDAAQAHALMESGDH  317 (325)
T ss_pred             CCCc-CCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccC--ccccEEeHHHHHHHHHHHHhCCC
Confidence            3222 2455555557899998886443211       112455778888886653  35688999999999999988766


Q ss_pred             e-EEEEE
Q 020435          318 L-RCVIW  323 (326)
Q Consensus       318 ~-k~vv~  323 (326)
                      . |++++
T Consensus       318 ~~~~v~~  324 (325)
T TIGR02824       318 IGKIVLT  324 (325)
T ss_pred             cceEEEe
Confidence            5 88875

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=5.2e-27  Score=212.75  Aligned_cols=264  Identities=25%  Similarity=0.322  Sum_probs=211.8

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+.+|++++++++||+|+..+.                         .+....|             
T Consensus        56 ~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~-------------------------~~~~~~g-------------   97 (328)
T cd08268          56 PLPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIPA-------------------------ADLGQYG-------------   97 (328)
T ss_pred             CCCCCCCcceEEEEEeeCCCCCcCCCCCEEEeccc-------------------------cccCCCc-------------
Confidence            45889999999999999999999999999976432                         1111223             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT  165 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~  165 (326)
                            ++++|+.++.+.++++|+++++++++.+.+.+.+||+++.+...+.++++|+|+|+ |.+|++++++++..|+ 
T Consensus        98 ------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-  170 (328)
T cd08268          98 ------TYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-  170 (328)
T ss_pred             ------cceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-
Confidence                  89999999999999999999999999999999999998878888999999999987 9999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +++.++.++++.+.++++|.+.+++.+.   .++.+.+.+.+.+ ++|++++|.++.. ...++++++++ |+++.++..
T Consensus       171 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-g~~v~~g~~  245 (328)
T cd08268         171 TVIATTRTSEKRDALLALGAAHVIVTDE---EDLVAEVLRITGGKGVDVVFDPVGGPQ-FAKLADALAPG-GTLVVYGAL  245 (328)
T ss_pred             EEEEEcCCHHHHHHHHHcCCCEEEecCC---ccHHHHHHHHhCCCCceEEEECCchHh-HHHHHHhhccC-CEEEEEEeC
Confidence            8999999999999888899888888776   6777778877776 8999999999965 88899999998 999999864


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCC-CCCC----HHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLK-AKSD----IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-  318 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~----~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-  318 (326)
                      .. ....++....+.++.++.+....... ..++    ++.+.+++.++.+..  .....|++++++++++.+..++.. 
T Consensus       246 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  322 (328)
T cd08268         246 SG-EPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKP--VVDRVFPFDDIVEAHRYLESGQQIG  322 (328)
T ss_pred             CC-CCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcC--CcccEEcHHHHHHHHHHHHcCCCCc
Confidence            32 22334444346678888776543211 1122    344455666775543  355889999999999999887665 


Q ss_pred             EEEEE
Q 020435          319 RCVIW  323 (326)
Q Consensus       319 k~vv~  323 (326)
                      |++++
T Consensus       323 ~vv~~  327 (328)
T cd08268         323 KIVVT  327 (328)
T ss_pred             eEEEe
Confidence            88875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>smart00829 PKS_ER Enoylreductase

Probab=99.96  E-value=4.2e-27  Score=209.21  Aligned_cols=255  Identities=22%  Similarity=0.306  Sum_probs=205.1

Q ss_pred             CCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccccc
Q 020435            8 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHH   87 (326)
Q Consensus         8 ~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~   87 (326)
                      .|.++|||++|+|+.+|++++.+++||+|+...                               .               
T Consensus        23 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~-------------------------------~---------------   56 (288)
T smart00829       23 GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA-------------------------------P---------------   56 (288)
T ss_pred             CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-------------------------------C---------------
Confidence            367999999999999999999999999997531                               1               


Q ss_pred             ccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCE
Q 020435           88 FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATR  166 (326)
Q Consensus        88 ~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~  166 (326)
                          |+|++|+.++.+.++++|+++++++++.+.+.+.|+|.++.+...+.++++|+|+|+ |.+|++++++++..|+ +
T Consensus        57 ----g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~-~  131 (288)
T smart00829       57 ----GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGA-E  131 (288)
T ss_pred             ----CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-E
Confidence                389999999999999999999999999999999999998778888999999999985 9999999999999999 8


Q ss_pred             EEEEcCChhHHHHHHhcCC--cEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          167 IIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      |+++++++++.+.++++|+  +++++..+   .++.+.+.+..++ ++|.++|+.++.. ....+++++++ |+++.++.
T Consensus       132 v~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-g~~v~~g~  206 (288)
T smart00829      132 VFATAGSPEKRDFLRELGIPDDHIFSSRD---LSFADEILRATGGRGVDVVLNSLAGEF-LDASLRCLAPG-GRFVEIGK  206 (288)
T ss_pred             EEEEeCCHHHHHHHHHcCCChhheeeCCC---ccHHHHHHHHhCCCCcEEEEeCCCHHH-HHHHHHhccCC-cEEEEEcC
Confidence            9999999999999999998  78888766   6777888888777 9999999999654 88899999998 99999986


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCC-----CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLK-----AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      ........++... +.++.++.+.......     ..+.+..++++++++.+++.  ..+.|++++++++++.+..+...
T Consensus       207 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  283 (288)
T smart00829      207 RDIRDNSQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL--PVTVFPISDVEDAFRYMQQGKHI  283 (288)
T ss_pred             cCCccccccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCc--CceEEcHHHHHHHHHHHhcCCCc
Confidence            4321122233322 3345555554321100     01236678888888876643  44789999999999999887654


Q ss_pred             -EEE
Q 020435          319 -RCV  321 (326)
Q Consensus       319 -k~v  321 (326)
                       |++
T Consensus       284 ~~iv  287 (288)
T smart00829      284 GKVV  287 (288)
T ss_pred             ceEe
Confidence             665

Enoylreductase in Polyketide synthases.

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.96  E-value=3e-27  Score=217.10  Aligned_cols=258  Identities=21%  Similarity=0.267  Sum_probs=196.8

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+.+|++++++++||+|++.+.                           ....             
T Consensus        71 ~~~p~~~G~e~~G~v~~vG~~v~~~~~Gd~V~~~~~---------------------------~~~~-------------  110 (350)
T cd08248          71 IEFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVP---------------------------PWSQ-------------  110 (350)
T ss_pred             CCCCeeecceeEEEEEecCCCcccCCCCCEEEEecC---------------------------CCCC-------------
Confidence            466899999999999999999999999999976421                           0112             


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCC----CCEEEEEcc-CHHHHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV----GSTVVIFGL-GSIGLAVAEGAR  160 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~----~~~vlI~Ga-g~~G~~a~~la~  160 (326)
                            |+|++|+.++++.++++|+++++++++.+++.+.|||+++.+...+.+    +++|+|+|+ |++|++++++|+
T Consensus       111 ------g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~  184 (350)
T cd08248         111 ------GTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLK  184 (350)
T ss_pred             ------ccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHH
Confidence                  399999999999999999999999999999999999998777777654    999999986 999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  240 (326)
                      ++|+ +|+++.++ ++.+.++++|.+++++..+   .++.+.+...  +++|++|||.+... ...++++++++ |+++.
T Consensus       185 ~~G~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~~~l~~~--~~vd~vi~~~g~~~-~~~~~~~l~~~-G~~v~  255 (350)
T cd08248         185 AWGA-HVTTTCST-DAIPLVKSLGADDVIDYNN---EDFEEELTER--GKFDVILDTVGGDT-EKWALKLLKKG-GTYVT  255 (350)
T ss_pred             HCCC-eEEEEeCc-chHHHHHHhCCceEEECCC---hhHHHHHHhc--CCCCEEEECCChHH-HHHHHHHhccC-CEEEE
Confidence            9999 88888754 6777888899988888766   5555554432  38999999999885 89999999998 99999


Q ss_pred             eccCCCCCcc--cc-----c-HHHHHhcC-------CEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccH
Q 020435          241 LGVDQPGSQL--SL-----S-SFEVLHSG-------KILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI  305 (326)
Q Consensus       241 ~g~~~~~~~~--~~-----~-~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i  305 (326)
                      ++........  ..     . ...+....       ..+.... . ....+.+..+++++.++.+.+  .+++.|+++++
T Consensus       256 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~  331 (350)
T cd08248         256 LVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGF-F-SPSGSALDELAKLVEDGKIKP--VIDKVFPFEEV  331 (350)
T ss_pred             ecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEE-E-CCCHHHHHHHHHHHhCCCEec--ccceeecHHHH
Confidence            9854211110  01     0 00111101       0000000 0 111346888999999997654  36688999999


Q ss_pred             HHHHHHHHcCcee-EEEE
Q 020435          306 NSAFDLLIKGKCL-RCVI  322 (326)
Q Consensus       306 ~~a~~~~~~~~~~-k~vv  322 (326)
                      .++++.+.+++.. |+++
T Consensus       332 ~~a~~~~~~~~~~~~vv~  349 (350)
T cd08248         332 PEAYEKVESGHARGKTVI  349 (350)
T ss_pred             HHHHHHHhcCCCceEEEe
Confidence            9999999887655 7775

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=1.6e-26  Score=209.73  Aligned_cols=260  Identities=25%  Similarity=0.339  Sum_probs=202.3

Q ss_pred             CCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccccc
Q 020435            8 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHH   87 (326)
Q Consensus         8 ~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~   87 (326)
                      +|.++|||++|+|+.+|++++.+++||+|++.+.                           +...|              
T Consensus        56 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~---------------------------~~~~~--------------   94 (325)
T cd08271          56 YPHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHAS---------------------------LARGG--------------   94 (325)
T ss_pred             CCcccccceEEEEEEeCCCCCcCCCCCEEEeccC---------------------------CCCCc--------------
Confidence            4789999999999999999999999999976421                           11223              


Q ss_pred             ccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCE
Q 020435           88 FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATR  166 (326)
Q Consensus        88 ~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~  166 (326)
                           +|++|+.++.+.++++|+++++.+++.+.+.+.+|++++.+.+++.++++|+|+|+ |.+|++++++++..|+ .
T Consensus        95 -----~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~  168 (325)
T cd08271          95 -----SFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-R  168 (325)
T ss_pred             -----cceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-E
Confidence                 89999999999999999999999999999999999998878889999999999997 8999999999999999 8


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+.+. ++++.+.++.+|++.+++...   .++.+.+++...+ ++|++++|.++.. ....+++++++ |+++.++...
T Consensus       169 v~~~~-~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-G~~v~~~~~~  242 (325)
T cd08271         169 VITTC-SKRNFEYVKSLGADHVIDYND---EDVCERIKEITGGRGVDAVLDTVGGET-AAALAPTLAFN-GHLVCIQGRP  242 (325)
T ss_pred             EEEEE-cHHHHHHHHHcCCcEEecCCC---ccHHHHHHHHcCCCCCcEEEECCCcHh-HHHHHHhhccC-CEEEEEcCCC
Confidence            88877 677788888899988988776   6777788888776 9999999999877 67789999998 9999987532


Q ss_pred             CCCcccccHH--HHHhcCCEEEeeeccCC-----CCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          246 PGSQLSLSSF--EVLHSGKILMGSLFGGL-----KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       246 ~~~~~~~~~~--~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      ...  .....  .+..+++.+........     ...+.+..++++++++.+.+.  ..+.|+++++.++++.+.++...
T Consensus       243 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~  318 (325)
T cd08271         243 DAS--PDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPL--VIEVLPFEQLPEALRALKDRHTR  318 (325)
T ss_pred             CCc--chhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeec--cceEEcHHHHHHHHHHHHcCCcc
Confidence            211  11110  11112222222211110     011235678889989876543  45889999999999999887665


Q ss_pred             -EEEEEe
Q 020435          319 -RCVIWM  324 (326)
Q Consensus       319 -k~vv~~  324 (326)
                       |+++++
T Consensus       319 ~kiv~~~  325 (325)
T cd08271         319 GKIVVTI  325 (325)
T ss_pred             ceEEEEC
Confidence             888763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.95  E-value=1.9e-26  Score=205.23  Aligned_cols=256  Identities=22%  Similarity=0.255  Sum_probs=206.2

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|++++.+++||+|....                               .              
T Consensus        26 ~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-------------------------------~--------------   60 (293)
T cd05195          26 GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-------------------------------P--------------   60 (293)
T ss_pred             CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------------------c--------------
Confidence            3588999999999999999999999999997531                               1              


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT  165 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~  165 (326)
                           |+|++|+.++.+.++++|+++++++++.+.+++.|||.++.+...++++++|+|+|+ |.+|++++++++..|+ 
T Consensus        61 -----g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~-  134 (293)
T cd05195          61 -----GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGA-  134 (293)
T ss_pred             -----CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCC-
Confidence                 389999999999999999999999999998999999998878888999999999975 9999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHhcC--CcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          166 RIIGVDVISEKFEIGKRFG--VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g--~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +|++++.++++.+.+++.+  ++++++..+   .++.+.+++.+.+ ++|+++||.++.. ....+++++++ |+++.++
T Consensus       135 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-g~~v~~g  209 (293)
T cd05195         135 EVFATVGSEEKREFLRELGGPVDHIFSSRD---LSFADGILRATGGRGVDVVLNSLSGEL-LRASWRCLAPF-GRFVEIG  209 (293)
T ss_pred             EEEEEeCCHHHHHHHHHhCCCcceEeecCc---hhHHHHHHHHhCCCCceEEEeCCCchH-HHHHHHhcccC-ceEEEee
Confidence            8999998989999888887  778888766   6788888888877 9999999999985 99999999998 9999998


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCC------CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLK------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  316 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~  316 (326)
                      .........+.... +.++..+.........      ..+.+..+++++.++.+.  +..+..+++++++++++.+..++
T Consensus       210 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~  286 (293)
T cd05195         210 KRDILSNSKLGMRP-FLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLK--PLPPTVVPSASEIDAFRLMQSGK  286 (293)
T ss_pred             ccccccCCccchhh-hccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcc--cCCCeeechhhHHHHHHHHhcCC
Confidence            64322112233222 2234555443222110      012467788899899764  34567899999999999998876


Q ss_pred             ee-EEE
Q 020435          317 CL-RCV  321 (326)
Q Consensus       317 ~~-k~v  321 (326)
                      .. |++
T Consensus       287 ~~~~iv  292 (293)
T cd05195         287 HIGKVV  292 (293)
T ss_pred             CCceec
Confidence            65 665

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=1.9e-26  Score=209.06  Aligned_cols=258  Identities=23%  Similarity=0.280  Sum_probs=208.6

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCccccccCCccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETI   85 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~   85 (326)
                      ..|.++|||++|+|+.+|++++++++||+|+....                          ++ ...             
T Consensus        56 ~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~--------------------------~~~~~~-------------   96 (326)
T cd08272          56 PLPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAG--------------------------GLGGLQ-------------   96 (326)
T ss_pred             CCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC--------------------------CcCCCC-------------
Confidence            45889999999999999999999999999975321                          10 012             


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                            |++++|+.++.+.++++|+++++++++.+++.+.+||+++.+..++.++++++|+|+ |.+|++++++++..|+
T Consensus        97 ------g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~  170 (326)
T cd08272          97 ------GSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA  170 (326)
T ss_pred             ------CceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC
Confidence                  389999999999999999999999999999999999998888899999999999986 9999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +|+.++++ ++.+.++++|.+.+++...   . +.+.+++.+.+ ++|+++||.++.. ....+++++++ |+++.++.
T Consensus       171 -~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~-~~~~~~~~~~~~~~d~v~~~~~~~~-~~~~~~~l~~~-g~~v~~~~  242 (326)
T cd08272         171 -RVYATASS-EKAAFARSLGADPIIYYRE---T-VVEYVAEHTGGRGFDVVFDTVGGET-LDASFEAVALY-GRVVSILG  242 (326)
T ss_pred             -EEEEEech-HHHHHHHHcCCCEEEecch---h-HHHHHHHhcCCCCCcEEEECCChHH-HHHHHHHhccC-CEEEEEec
Confidence             89999988 8888888899988888766   5 77788888877 9999999999876 88899999998 99999986


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccC--C--C----CCCCHHHHHHHHhCCCCCCCccee-eeeccccHHHHHHHHHc
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGG--L--K----AKSDIPILLKRYMDKELELDKFVT-HEMKFEEINSAFDLLIK  314 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~----~~~~~~~~~~l~~~g~~~~~~~i~-~~~~l~~i~~a~~~~~~  314 (326)
                      ..   ...+.  ....+++++.+.....  .  .    ..+.+..++++++++.++.  .++ +.|++++++++++.+.+
T Consensus       243 ~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~~~~~~~~~  315 (326)
T cd08272         243 GA---THDLA--PLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRP--LLDPRTFPLEEAAAAHARLES  315 (326)
T ss_pred             CC---ccchh--hHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCccc--ccccceecHHHHHHHHHHHHc
Confidence            42   12222  2235577776654221  1  0    1234677888888886653  334 88999999999999988


Q ss_pred             Ccee-EEEEEe
Q 020435          315 GKCL-RCVIWM  324 (326)
Q Consensus       315 ~~~~-k~vv~~  324 (326)
                      ++.. |+++++
T Consensus       316 ~~~~~~vv~~~  326 (326)
T cd08272         316 GSARGKIVIDV  326 (326)
T ss_pred             CCcccEEEEEC
Confidence            7655 888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.95  E-value=3.1e-26  Score=210.73  Aligned_cols=263  Identities=18%  Similarity=0.192  Sum_probs=193.7

Q ss_pred             CCcccCCceeEEEEEecCCCC-CccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            8 FPRILGHEAIGVVESVGENVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         8 ~p~i~G~e~~G~V~~~G~~v~-~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .|.++|||++|+|+++|++++ .|++||+|++.....|                         ...              
T Consensus        58 ~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~~-------------------------~~~--------------   98 (352)
T cd08247          58 KEKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIYPHPY-------------------------GGQ--------------   98 (352)
T ss_pred             CCCccCceeEEEEEEeCcccccCCCCCCEEEEeecCCC-------------------------CCC--------------
Confidence            478999999999999999998 8999999976432110                         012              


Q ss_pred             cccccccccceEEeccc----ceEEcCCCCCccccccccchhhhhhhhhhhhc-ccCCCCEEEEEcc-CHHHHHHHHHHH
Q 020435           87 HFVSVSSFSEYTVLDIA----HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGL-GSIGLAVAEGAR  160 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~----~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~-~~~~~~~vlI~Ga-g~~G~~a~~la~  160 (326)
                           |+|++|++++..    .++++|+++++++++.+++.+.|||+++.+.. ++++|++|+|+|+ |++|++++++|+
T Consensus        99 -----g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~  173 (352)
T cd08247          99 -----GTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAK  173 (352)
T ss_pred             -----ceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHH
Confidence                 499999999987    79999999999999999999999999876666 7999999999987 799999999999


Q ss_pred             HcC-CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCcc---HHHHHHHh-cCC-CccEEEEcCCcHHHHHHHHHHhh--
Q 020435          161 LCG-ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS---VSQIIIDM-TDG-GADYCFECVGLASLVQEAYACCR--  232 (326)
Q Consensus       161 ~~g-~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~---~~~~i~~~-~~~-g~d~v~d~~g~~~~~~~~~~~l~--  232 (326)
                      ..| ..+++.+. ++++.+.++++|++++++.++   .+   +...+.+. +++ ++|++|||.++......++++++  
T Consensus       174 ~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~  249 (352)
T cd08247         174 NHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDA---HSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPK  249 (352)
T ss_pred             hcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCC---CcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCcc
Confidence            874 32566665 556666778899999998766   34   44444444 424 99999999998655889999999  


Q ss_pred             -cCCcEEEEeccCCCCC--ccc--------ccHHHHH----hcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCccee
Q 020435          233 -KGWGKTIVLGVDQPGS--QLS--------LSSFEVL----HSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT  297 (326)
Q Consensus       233 -~~~G~~v~~g~~~~~~--~~~--------~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~  297 (326)
                       ++ |+++.++......  ...        .....+.    .+...+.... . ....+.++.+++++.++.+.+  .++
T Consensus       250 ~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~--~~~  324 (352)
T cd08247         250 SKN-GHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFL-L-DPNADWIEKCAELIADGKVKP--PID  324 (352)
T ss_pred             CCC-CEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEE-e-cCCHHHHHHHHHHHhCCCeEe--eec
Confidence             98 9999875321110  000        0011111    1122222111 0 011235778899999996643  366


Q ss_pred             eeeccccHHHHHHHHHcCcee-EEEEE
Q 020435          298 HEMKFEEINSAFDLLIKGKCL-RCVIW  323 (326)
Q Consensus       298 ~~~~l~~i~~a~~~~~~~~~~-k~vv~  323 (326)
                      +.++++++++|++.+.+++.. |++++
T Consensus       325 ~~~~l~~~~~a~~~~~~~~~~gkvvi~  351 (352)
T cd08247         325 SVYPFEDYKEAFERLKSNRAKGKVVIK  351 (352)
T ss_pred             cEecHHHHHHHHHHHHcCCCCCcEEEe
Confidence            889999999999999887765 88875

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.95  E-value=8.9e-26  Score=205.14  Aligned_cols=261  Identities=16%  Similarity=0.178  Sum_probs=200.7

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|++  ++++++++||+|++....                        ++....|             
T Consensus        56 ~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~~~------------------------~~~~~~g-------------   96 (324)
T cd08288          56 TFPLVPGIDLAGTVVE--SSSPRFKPGDRVVLTGWG------------------------VGERHWG-------------   96 (324)
T ss_pred             CCCCccccceEEEEEe--CCCCCCCCCCEEEECCcc------------------------CCCCCCC-------------
Confidence            4688999999999999  777889999999763110                        1111123             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhh--hhcccC-CCCEEEEEcc-CHHHHHHHHHHHHc
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW--RTANVE-VGSTVVIFGL-GSIGLAVAEGARLC  162 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~--~~~~~~-~~~~vlI~Ga-g~~G~~a~~la~~~  162 (326)
                            +|++|++++.+.++++|+++++++++.+++.+++|+.++.  +..+.. ++++|||+|+ |++|++++|+|+++
T Consensus        97 ------~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~  170 (324)
T cd08288          97 ------GYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARL  170 (324)
T ss_pred             ------cceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHC
Confidence                  8999999999999999999999999999999999987643  224445 5789999997 99999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      |+ +|++++.++++.+.++++|+++++++.+   .+  ..++.++.+++|.++|++++.. ....+..++.+ |+++.+|
T Consensus       171 G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~--~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~-g~~~~~G  242 (324)
T cd08288         171 GY-EVVASTGRPEEADYLRSLGASEIIDRAE---LS--EPGRPLQKERWAGAVDTVGGHT-LANVLAQTRYG-GAVAACG  242 (324)
T ss_pred             CC-eEEEEeCCHHHHHHHHhcCCCEEEEcch---hh--HhhhhhccCcccEEEECCcHHH-HHHHHHHhcCC-CEEEEEE
Confidence            99 8999999999999999999999998765   22  2455555557999999999855 77888899997 9999998


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCCC---CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-  318 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-  318 (326)
                      .... ....++...++.++.++.+........   .+.+..+++++.++.+.+   +.+.++++++++|++.+.+++.. 
T Consensus       243 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~a~~~~~~~~~~~  318 (324)
T cd08288         243 LAGG-ADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEA---LTREIPLADVPDAAEAILAGQVRG  318 (324)
T ss_pred             ecCC-CCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCccc---cceeecHHHHHHHHHHHhcCCccC
Confidence            7522 223344445546788888875332211   123556677777886543   35899999999999999988776 


Q ss_pred             EEEEEe
Q 020435          319 RCVIWM  324 (326)
Q Consensus       319 k~vv~~  324 (326)
                      |+++++
T Consensus       319 ~vvv~~  324 (324)
T cd08288         319 RVVVDV  324 (324)
T ss_pred             eEEEeC
Confidence            888763

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=2.1e-26  Score=209.81  Aligned_cols=255  Identities=26%  Similarity=0.333  Sum_probs=196.1

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+.+|+++++|++||+|....                              ..              
T Consensus        56 ~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~------------------------------~~--------------   91 (331)
T cd08273          56 PLPFTPGYDLVGRVDALGSGVTGFEVGDRVAALT------------------------------RV--------------   91 (331)
T ss_pred             CCCcccccceEEEEEEeCCCCccCCCCCEEEEeC------------------------------CC--------------
Confidence            4688999999999999999999999999996531                              11              


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT  165 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~  165 (326)
                           |+|++|+.++.+.++++|+++++++++.+++++.+||+++.+..++.++++|+|+|+ |++|++++++|+..|+ 
T Consensus        92 -----g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-  165 (331)
T cd08273          92 -----GGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-  165 (331)
T ss_pred             -----cceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-
Confidence                 389999999999999999999999999999999999998877788999999999997 9999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      +|+.++. +++.+.++++|+.. ++...   .++.+.  ...++++|+++||.++.. ...++++++++ |+++.+|...
T Consensus       166 ~v~~~~~-~~~~~~~~~~g~~~-~~~~~---~~~~~~--~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~  236 (331)
T cd08273         166 EVYGTAS-ERNHAALRELGATP-IDYRT---KDWLPA--MLTPGGVDVVFDGVGGES-YEESYAALAPG-GTLVCYGGNS  236 (331)
T ss_pred             EEEEEeC-HHHHHHHHHcCCeE-EcCCC---cchhhh--hccCCCceEEEECCchHH-HHHHHHHhcCC-CEEEEEccCC
Confidence            8999987 88888888899754 44443   344433  333348999999999988 88999999998 9999998653


Q ss_pred             CCCccccc--HH----------HH--HhcCCEEEeeeccCC----CCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHH
Q 020435          246 PGSQLSLS--SF----------EV--LHSGKILMGSLFGGL----KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS  307 (326)
Q Consensus       246 ~~~~~~~~--~~----------~~--~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~  307 (326)
                      ........  ..          ..  +.+............    ...+.+++++++++++.+..  .+.+.++++++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~  314 (331)
T cd08273         237 SLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRP--KIAKRLPLSEVAE  314 (331)
T ss_pred             CCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccC--CcceEEcHHHHHH
Confidence            22221111  10          01  111222222211000    01245788999999997653  3668899999999


Q ss_pred             HHHHHHcCcee-EEEE
Q 020435          308 AFDLLIKGKCL-RCVI  322 (326)
Q Consensus       308 a~~~~~~~~~~-k~vv  322 (326)
                      +++.+.+++.. |+++
T Consensus       315 a~~~~~~~~~~gkvv~  330 (331)
T cd08273         315 AHRLLESGKVVGKIVL  330 (331)
T ss_pred             HHHHHHcCCCcceEEe
Confidence            99999877665 7764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.95  E-value=2e-27  Score=229.94  Aligned_cols=226  Identities=18%  Similarity=0.201  Sum_probs=195.6

Q ss_pred             cccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEc-cCHHHHHHHHHHHHcCCCEEEEEc
Q 020435           93 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVD  171 (326)
Q Consensus        93 ~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~G-ag~~G~~a~~la~~~g~~~V~~~~  171 (326)
                      ++++-+.++.++++.+|++...++|++.++.++|||++++.+...++|++||||+ +|++|++++.+|.+.|+ +||.++
T Consensus      1506 sLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTV 1584 (2376)
T KOG1202|consen 1506 SLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTV 1584 (2376)
T ss_pred             hhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEec
Confidence            8999999999999999999999999999999999999999999999999999995 69999999999999999 999999


Q ss_pred             CChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCC
Q 020435          172 VISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  246 (326)
Q Consensus       172 ~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  246 (326)
                      .|+|+.+++.+    +..+++-|..+   .+|..-+++-|.| |+|+|++...++. ++.+++||..+ |+|..+|.-+-
T Consensus      1585 GSaEKRefL~~rFPqLqe~~~~NSRd---tsFEq~vl~~T~GrGVdlVLNSLaeEk-LQASiRCLa~~-GRFLEIGKfDL 1659 (2376)
T KOG1202|consen 1585 GSAEKREFLLKRFPQLQETNFANSRD---TSFEQHVLWHTKGRGVDLVLNSLAEEK-LQASIRCLALH-GRFLEIGKFDL 1659 (2376)
T ss_pred             CcHHHHHHHHHhchhhhhhccccccc---ccHHHHHHHHhcCCCeeeehhhhhHHH-HHHHHHHHHhc-Ceeeeecceec
Confidence            99999998764    34677778777   8899999999999 9999999999988 99999999998 99999996544


Q ss_pred             CCcccccHHHHHhcCCEEEeeeccCCCC--CCCHHHHHHHHhCCCCC--CCcceeeeeccccHHHHHHHHHcCcee-EEE
Q 020435          247 GSQLSLSSFEVLHSGKILMGSLFGGLKA--KSDIPILLKRYMDKELE--LDKFVTHEMKFEEINSAFDLLIKGKCL-RCV  321 (326)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~l~~~g~~~--~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~v  321 (326)
                      +...++.+. .+.||.+++|....+...  .+++.++..++++|.-+  .+++.+++|+-.++++||+.|.+++.+ |+|
T Consensus      1660 SqNspLGMa-vfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVv 1738 (2376)
T KOG1202|consen 1660 SQNSPLGMA-VFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVV 1738 (2376)
T ss_pred             ccCCcchhh-hhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEE
Confidence            445555544 345799999987655432  23567778888887432  557788999999999999999999998 999


Q ss_pred             EEeC
Q 020435          322 IWMG  325 (326)
Q Consensus       322 v~~~  325 (326)
                      +++.
T Consensus      1739 ikvr 1742 (2376)
T KOG1202|consen 1739 IKVR 1742 (2376)
T ss_pred             EEEc
Confidence            9863

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.95  E-value=1.1e-25  Score=203.54  Aligned_cols=258  Identities=24%  Similarity=0.394  Sum_probs=211.6

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      ..|.++|||++|+|+.+|++++.+++||+|+...                              ..              
T Consensus        56 ~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~------------------------------~~--------------   91 (323)
T cd08241          56 PLPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALT------------------------------GQ--------------   91 (323)
T ss_pred             CCCCcccceeEEEEEEeCCCCCCCCCCCEEEEec------------------------------CC--------------
Confidence            3477899999999999999999999999997532                              11              


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT  165 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~  165 (326)
                           |++++|+.++.+.++++|++++..+++.+.+.+.+||+++.+..++.++++|+|+|+ |.+|++++++++..|+ 
T Consensus        92 -----~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-  165 (323)
T cd08241          92 -----GGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-  165 (323)
T ss_pred             -----ceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-
Confidence                 389999999999999999999999998888899999998777788999999999997 9999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +|+.++.++++.+.++++|++.+++...   .++.+.+.+.+.+ ++|.++||.++.. ...++++++++ |+++.++..
T Consensus       166 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~~~~g~~~-~~~~~~~~~~~-g~~v~~~~~  240 (323)
T cd08241         166 RVIAAASSEEKLALARALGADHVIDYRD---PDLRERVKALTGGRGVDVVYDPVGGDV-FEASLRSLAWG-GRLLVIGFA  240 (323)
T ss_pred             EEEEEeCCHHHHHHHHHcCCceeeecCC---ccHHHHHHHHcCCCCcEEEEECccHHH-HHHHHHhhccC-CEEEEEccC
Confidence            8999999999999998899888888776   6788888888877 9999999999855 88899999998 999999864


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCC------CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKA------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      ... ...+.....+.++.++.+........      .+.+.++++++.++.+..  ..++.|+++++.++++.+.++...
T Consensus       241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  317 (323)
T cd08241         241 SGE-IPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRP--HVSAVFPLEQAAEALRALADRKAT  317 (323)
T ss_pred             CCC-cCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCccc--ccceEEcHHHHHHHHHHHHhCCCC
Confidence            221 11133333455788888875443221      134677889999987643  366889999999999998877655


Q ss_pred             -EEEE
Q 020435          319 -RCVI  322 (326)
Q Consensus       319 -k~vv  322 (326)
                       |+++
T Consensus       318 ~~vvv  322 (323)
T cd08241         318 GKVVL  322 (323)
T ss_pred             CcEEe
Confidence             7775

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=1.9e-25  Score=203.59  Aligned_cols=260  Identities=21%  Similarity=0.327  Sum_probs=206.0

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+.+|++++++++||+|+...                              ..|             
T Consensus        55 ~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~------------------------------~~~-------------   91 (337)
T cd08275          55 KPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLT------------------------------RFG-------------   91 (337)
T ss_pred             CCCCCCcceeEEEEEEECCCCcCCCCCCEEEEec------------------------------CCC-------------
Confidence            5688999999999999999999999999997531                              122             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHc-CC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC-GA  164 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~-g~  164 (326)
                            ++++|+.++.+.++++|+++++++++.+++.+.+||+++.+..+++++++|+|+|+ |++|++++++|+.. +.
T Consensus        92 ------~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~  165 (337)
T cd08275          92 ------GYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNV  165 (337)
T ss_pred             ------eeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCc
Confidence                  89999999999999999999999999999999999998888889999999999997 99999999999998 43


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       .++... .+++.+.++.+|++.+++...   .++.+.+++.+++++|+++||.++.. ...++++++++ |+++.+|..
T Consensus       166 -~~~~~~-~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~d~v~~~~g~~~-~~~~~~~l~~~-g~~v~~g~~  238 (337)
T cd08275         166 -TVVGTA-SASKHEALKENGVTHVIDYRT---QDYVEEVKKISPEGVDIVLDALGGED-TRKSYDLLKPM-GRLVVYGAA  238 (337)
T ss_pred             -EEEEeC-CHHHHHHHHHcCCcEEeeCCC---CcHHHHHHHHhCCCceEEEECCcHHH-HHHHHHhhccC-cEEEEEeec
Confidence             333222 345777888899988888776   67878888777559999999999876 88999999998 999999864


Q ss_pred             CCCCc---------------ccccHHHHHhcCCEEEeeeccCCCC-C----CCHHHHHHHHhCCCCCCCcceeeeecccc
Q 020435          245 QPGSQ---------------LSLSSFEVLHSGKILMGSLFGGLKA-K----SDIPILLKRYMDKELELDKFVTHEMKFEE  304 (326)
Q Consensus       245 ~~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~~-~----~~~~~~~~l~~~g~~~~~~~i~~~~~l~~  304 (326)
                      .....               ..+....++.++.++.++....... .    ..+.+++++++++.+.+.  .++.|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  316 (337)
T cd08275         239 NLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPK--IDSVFPFEE  316 (337)
T ss_pred             CCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCc--eeeEEcHHH
Confidence            32111               1222234456788888775432211 1    136678888989876543  568899999


Q ss_pred             HHHHHHHHHcCcee-EEEEEe
Q 020435          305 INSAFDLLIKGKCL-RCVIWM  324 (326)
Q Consensus       305 i~~a~~~~~~~~~~-k~vv~~  324 (326)
                      ++++++.+.+++.. |+++++
T Consensus       317 ~~~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         317 VGEAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             HHHHHHHHHcCCCcceEEEeC
Confidence            99999999887665 888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=1.2e-25  Score=203.30  Aligned_cols=255  Identities=23%  Similarity=0.278  Sum_probs=193.5

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      ..|.++|||++|+|+++|++++++++||+|+.....                           ...              
T Consensus        57 ~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~---------------------------~~~--------------   95 (319)
T cd08267          57 PFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP---------------------------KGG--------------   95 (319)
T ss_pred             CCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC---------------------------CCC--------------
Confidence            457889999999999999999999999999764220                           112              


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT  165 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~  165 (326)
                           |+|++|+.++.+.++++|+++++++++.+++.+.+||+++.+..+++++++|+|+|+ |++|++++++|+..|+ 
T Consensus        96 -----g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-  169 (319)
T cd08267          96 -----GALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-  169 (319)
T ss_pred             -----ceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-
Confidence                 389999999999999999999999999999999999998777777999999999997 9999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcH-HHHHHHHHHhhcCCcEEEEecc
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +|++++++ ++.+.++++|.+++++...   .++.   +..+.+ ++|++++|.++. ......+..++++ |+++.+|.
T Consensus       170 ~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~---~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~-g~~i~~g~  241 (319)
T cd08267         170 HVTGVCST-RNAELVRSLGADEVIDYTT---EDFV---ALTAGGEKYDVIFDAVGNSPFSLYRASLALKPG-GRYVSVGG  241 (319)
T ss_pred             EEEEEeCH-HHHHHHHHcCCCEeecCCC---CCcc---hhccCCCCCcEEEECCCchHHHHHHhhhccCCC-CEEEEecc
Confidence            89998865 7888888899988887665   3433   344555 899999999853 2233444459998 99999986


Q ss_pred             CCCCCcccc---cHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-E
Q 020435          244 DQPGSQLSL---SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-R  319 (326)
Q Consensus       244 ~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k  319 (326)
                      .........   ....... ...+......  ...+.+.+++++++++.++.  .+++.|++++++++++.+.+++.. |
T Consensus       242 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~i~~a~~~~~~~~~~~~  316 (319)
T cd08267         242 GPSGLLLVLLLLPLTLGGG-GRRLKFFLAK--PNAEDLEQLAELVEEGKLKP--VIDSVYPLEDAPEAYRRLKSGRARGK  316 (319)
T ss_pred             ccccccccccccchhhccc-cceEEEEEec--CCHHHHHHHHHHHHCCCeee--eeeeEEcHHHHHHHHHHHhcCCCCCc
Confidence            432222111   1111111 1222222111  11456888999999987653  366899999999999999887655 6


Q ss_pred             EE
Q 020435          320 CV  321 (326)
Q Consensus       320 ~v  321 (326)
                      ++
T Consensus       317 vv  318 (319)
T cd08267         317 VV  318 (319)
T ss_pred             Ee
Confidence            65

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.94  E-value=2.6e-25  Score=199.93  Aligned_cols=250  Identities=22%  Similarity=0.312  Sum_probs=198.9

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      ...+|.++|||++|+|+.+|++++.+++||+|+..+.                           ....|           
T Consensus        56 ~~~~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~~---------------------------~~~~g-----------   97 (309)
T cd05289          56 PLTLPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTP---------------------------FTRGG-----------   97 (309)
T ss_pred             CCCCCCccccceeEEEEeeCCCCCCCCCCCEEEEccC---------------------------CCCCC-----------
Confidence            3456899999999999999999999999999976421                           01123           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCG  163 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g  163 (326)
                              ++++|+.++...++++|++++++.++.+++.+.+||+++.+...+.++++|+|+|+ |.+|++++++++..|
T Consensus        98 --------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g  169 (309)
T cd05289          98 --------AYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARG  169 (309)
T ss_pred             --------cceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcC
Confidence                    89999999999999999999999999999999999998777777999999999997 999999999999999


Q ss_pred             CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          164 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       164 ~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      + +|++++.++ +.+.++++|.+++++...   .++.+    .+.+ ++|+++||.++.. ...++++++++ |+++.++
T Consensus       170 ~-~v~~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~~----~~~~~~~d~v~~~~~~~~-~~~~~~~l~~~-g~~v~~g  238 (309)
T cd05289         170 A-RVIATASAA-NADFLRSLGADEVIDYTK---GDFER----AAAPGGVDAVLDTVGGET-LARSLALVKPG-GRLVSIA  238 (309)
T ss_pred             C-EEEEEecch-hHHHHHHcCCCEEEeCCC---Cchhh----ccCCCCceEEEECCchHH-HHHHHHHHhcC-cEEEEEc
Confidence            9 888888776 778888899888887665   44433    3344 8999999999885 88999999998 9999998


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEE
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCV  321 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~v  321 (326)
                      .....  ..    ....++.++........  .+.+..++++++++.+.  +.+++.|++++++++++.+..++.. |++
T Consensus       239 ~~~~~--~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv  308 (309)
T cd05289         239 GPPPA--EQ----AAKRRGVRAGFVFVEPD--GEQLAELAELVEAGKLR--PVVDRVFPLEDAAEAHERLESGHARGKVV  308 (309)
T ss_pred             CCCcc--hh----hhhhccceEEEEEeccc--HHHHHHHHHHHHCCCEE--EeeccEEcHHHHHHHHHHHHhCCCCCcEe
Confidence            64321  11    22334555554432211  35688899999998654  3366899999999999999887654 665

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.93  E-value=2.8e-24  Score=183.22  Aligned_cols=250  Identities=20%  Similarity=0.223  Sum_probs=201.3

Q ss_pred             ceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccccccccccc
Q 020435           15 EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF   94 (326)
Q Consensus        15 e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~   94 (326)
                      .++|+|++.  +.+.+++||.|+..                              .                      +|
T Consensus        78 ~GV~kVi~S--~~~~~~~GD~v~g~------------------------------~----------------------gW  103 (343)
T KOG1196|consen   78 FGVAKVIDS--GHPNYKKGDLVWGI------------------------------V----------------------GW  103 (343)
T ss_pred             CceEEEEec--CCCCCCcCceEEEe------------------------------c----------------------cc
Confidence            678999996  45789999999542                              1                      69


Q ss_pred             cceEEeccc--ceEEcCC--CCCccccc-cccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEE
Q 020435           95 SEYTVLDIA--HVVKVDP--TVPPNRAC-LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRII  168 (326)
Q Consensus        95 a~~~~v~~~--~~~~ip~--~~s~~~aa-~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~  168 (326)
                      .||.+++..  ..+++|.  ++++.-.. ++.++.+|||..+++...++.|++|+|-|| |++|+++.|+|+.+|+ +|+
T Consensus       104 eeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VV  182 (343)
T KOG1196|consen  104 EEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVV  182 (343)
T ss_pred             eEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEE
Confidence            999999764  3455544  45544433 577899999999999999999999999987 9999999999999999 999


Q ss_pred             EEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCC-
Q 020435          169 GVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP-  246 (326)
Q Consensus       169 ~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-  246 (326)
                      +.+.++|+.+.++. +|.+..+|+.+  +.++.+.+++..++|+|+.||.+|+.. ++..+..++.. |+++.+|.... 
T Consensus       183 GsaGS~EKv~ll~~~~G~d~afNYK~--e~~~~~aL~r~~P~GIDiYfeNVGG~~-lDavl~nM~~~-gri~~CG~ISqY  258 (343)
T KOG1196|consen  183 GSAGSKEKVDLLKTKFGFDDAFNYKE--ESDLSAALKRCFPEGIDIYFENVGGKM-LDAVLLNMNLH-GRIAVCGMISQY  258 (343)
T ss_pred             EecCChhhhhhhHhccCCccceeccC--ccCHHHHHHHhCCCcceEEEeccCcHH-HHHHHHhhhhc-cceEeeeeehhc
Confidence            99999999998765 79999999998  237888888888889999999999999 99999999996 99999997541 


Q ss_pred             ---CCcccccHHHHHhcCCEEEeeeccCCCC--CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EE
Q 020435          247 ---GSQLSLSSFEVLHSGKILMGSLFGGLKA--KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RC  320 (326)
Q Consensus       247 ---~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~  320 (326)
                         ..+.--+...++.|++.+.|+.+.++..  .+.+..+..++++|+|++.+-+  .-.+++.+.|+.-+..+++. |.
T Consensus       259 N~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi--~~Glen~P~A~vglf~GkNvGKq  336 (343)
T KOG1196|consen  259 NLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDI--ADGLENGPSALVGLFHGKNVGKQ  336 (343)
T ss_pred             cccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhH--HHHHhccHHHHHHHhccCcccce
Confidence               1122223345677899999986655431  2346778899999999877443  23599999999999999987 99


Q ss_pred             EEEeC
Q 020435          321 VIWMG  325 (326)
Q Consensus       321 vv~~~  325 (326)
                      ++.+.
T Consensus       337 iv~va  341 (343)
T KOG1196|consen  337 LVKVA  341 (343)
T ss_pred             EEEee
Confidence            88875

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.78  E-value=3.9e-18  Score=134.18  Aligned_cols=129  Identities=28%  Similarity=0.490  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHH
Q 020435          150 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  228 (326)
Q Consensus       150 ~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~  228 (326)
                      ++|++++|+||+.|+ +|+++++++++++.++++|+++++++++   .++.+.+++.+++ ++|+||||+|.+..++.++
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~---~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~   76 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD---DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT---SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc---cccccccccccccccceEEEEecCcHHHHHHHH
Confidence            589999999999997 9999999999999999999999999998   8899999999998 9999999999777799999


Q ss_pred             HHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhC
Q 020435          229 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD  287 (326)
Q Consensus       229 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~  287 (326)
                      ++++++ |+++.+|... ....+++...++.+++++.+++.++   +++++++++++.+
T Consensus        77 ~~l~~~-G~~v~vg~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~la~  130 (130)
T PF00107_consen   77 KLLRPG-GRIVVVGVYG-GDPISFNLMNLMFKEITIRGSWGGS---PEDFQEALQLLAQ  130 (130)
T ss_dssp             HHEEEE-EEEEEESSTS-TSEEEEEHHHHHHTTEEEEEESSGG---HHHHHHHHHHHH-
T ss_pred             HHhccC-CEEEEEEccC-CCCCCCCHHHHHhCCcEEEEEccCC---HHHHHHHHHHhcC
Confidence            999998 9999999864 5788899999999999999997655   4788999888753

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.70  E-value=1.6e-17  Score=126.60  Aligned_cols=84  Identities=38%  Similarity=0.578  Sum_probs=75.9

Q ss_pred             CCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCC
Q 020435            3 DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG   82 (326)
Q Consensus         3 ~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~   82 (326)
                      .+...+|+|+|||++|+|+++|+++++|++||+|++.+...|+.|.+|+.+++++|.....   +|+..+|         
T Consensus        26 ~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~---~g~~~~G---------   93 (109)
T PF08240_consen   26 PPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNLCPNPEV---LGLGLDG---------   93 (109)
T ss_dssp             SSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGGTTTBEE---TTTSSTC---------
T ss_pred             ccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCccccCCCCCE---eEcCCCC---------
Confidence            4567899999999999999999999999999999999999999999999999999988776   7777778         


Q ss_pred             cccccccccccccceEEecccceEEc
Q 020435           83 ETIHHFVSVSSFSEYTVLDIAHVVKV  108 (326)
Q Consensus        83 ~~~~~~~~~g~~a~~~~v~~~~~~~i  108 (326)
                                +||||+.+++++++|+
T Consensus        94 ----------~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   94 ----------GFAEYVVVPARNLVPV  109 (109)
T ss_dssp             ----------SSBSEEEEEGGGEEEE
T ss_pred             ----------cccCeEEEehHHEEEC
Confidence                      9999999999999985

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.48  E-value=5.8e-13  Score=122.93  Aligned_cols=176  Identities=14%  Similarity=0.163  Sum_probs=138.4

Q ss_pred             hhhhhhhcc-cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHh
Q 020435          128 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       128 ~~~l~~~~~-~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      |.++.+..+ .-+|++|+|.|+|.+|+.+++.++.+|+ +|++++.++.+.+.++.+|++.+ +        ..+.+   
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~--------~~e~v---  255 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-T--------MEEAV---  255 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-c--------HHHHH---
Confidence            344444444 3579999999999999999999999999 89999999999999999998433 1        11222   


Q ss_pred             cCCCccEEEEcCCcHHHHHHH-HHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHH--HHHH
Q 020435          207 TDGGADYCFECVGLASLVQEA-YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIP--ILLK  283 (326)
Q Consensus       207 ~~~g~d~v~d~~g~~~~~~~~-~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~  283 (326)
                        .++|+||+|.|....+... +..++++ |.++.+|..    ...++...+..+++++.+++....  ..++.  +.+.
T Consensus       256 --~~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~----~~eId~~~L~~~el~i~g~~~~~~--~~~~~~g~aI~  326 (413)
T cd00401         256 --KEGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF----DVEIDVKGLKENAVEVVNIKPQVD--RYELPDGRRII  326 (413)
T ss_pred             --cCCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC----CCccCHHHHHhhccEEEEccCCcc--eEEcCCcchhh
Confidence              2689999999998877765 9999998 999999853    456787778888899988863321  12455  7999


Q ss_pred             HHhCCCC-CCCcceeee-----eccc-cHHHHHHHHHcCce--eEEEEEeC
Q 020435          284 RYMDKEL-ELDKFVTHE-----MKFE-EINSAFDLLIKGKC--LRCVIWMG  325 (326)
Q Consensus       284 l~~~g~~-~~~~~i~~~-----~~l~-~i~~a~~~~~~~~~--~k~vv~~~  325 (326)
                      ++.+|++ ++...++|.     ++++ ++.++++.+.++..  .|+++.+.
T Consensus       327 LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~  377 (413)
T cd00401         327 LLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK  377 (413)
T ss_pred             hhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence            9999998 888888888     8899 99999999987654  37777653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.35  E-value=1.5e-11  Score=116.37  Aligned_cols=155  Identities=19%  Similarity=0.248  Sum_probs=114.3

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCC----------CCccHHHHHHH
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNC----------GDKSVSQIIID  205 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~----------~~~~~~~~i~~  205 (326)
                      ..++++|+|+|+|.+|+++++.|+.+|+ +|++++.++++++.++++|++.+ ++..+.          ...++.+..++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            4579999999999999999999999999 89999999999999999999854 554330          01133333333


Q ss_pred             h-cC--CCccEEEEcCCcH-----HH-HHHHHHHhhcCCcEEEEeccCCCCC-cccccHHHHHh-cCCEEEeeeccCCCC
Q 020435          206 M-TD--GGADYCFECVGLA-----SL-VQEAYACCRKGWGKTIVLGVDQPGS-QLSLSSFEVLH-SGKILMGSLFGGLKA  274 (326)
Q Consensus       206 ~-~~--~g~d~v~d~~g~~-----~~-~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~-~~~~i~~~~~~~~~~  274 (326)
                      . .+  +++|+||+|++.+     .. .+.+++.++++ |++++++...+.. ..+.+...++. +++++.|.+  ++. 
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~--n~P-  316 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYT--DLP-  316 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeC--CCc-
Confidence            3 22  2799999999963     34 48999999998 9999999753322 34444445554 788998875  232 


Q ss_pred             CCCHH-HHHHHHhCCCCCCCccee
Q 020435          275 KSDIP-ILLKRYMDKELELDKFVT  297 (326)
Q Consensus       275 ~~~~~-~~~~l~~~g~~~~~~~i~  297 (326)
                       ..+. ++.+++.++.+++.++++
T Consensus       317 -~~~p~~As~lla~~~i~l~~lIt  339 (509)
T PRK09424        317 -SRLPTQSSQLYGTNLVNLLKLLC  339 (509)
T ss_pred             -hhHHHHHHHHHHhCCccHHHHhc
Confidence             3454 589999999887766654

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.26  E-value=2.1e-12  Score=100.95  Aligned_cols=120  Identities=21%  Similarity=0.337  Sum_probs=76.8

Q ss_pred             cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC--cHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhc
Q 020435          183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG--LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS  260 (326)
Q Consensus       183 ~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g--~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  260 (326)
                      ||+++++|+++   .++      ...+++|+|||++|  ....+..++++| ++ |+++.++.       .........+
T Consensus         1 LGAd~vidy~~---~~~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~-------~~~~~~~~~~   62 (127)
T PF13602_consen    1 LGADEVIDYRD---TDF------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG-------DLPSFARRLK   62 (127)
T ss_dssp             CT-SEEEETTC---SHH------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S-------HHHHHHHHHH
T ss_pred             CCcCEEecCCC---ccc------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC-------cccchhhhhc
Confidence            68999999987   666      22339999999999  666446777888 98 99999873       1111111111


Q ss_pred             CCEEEeeeccCC-C---CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEEE
Q 020435          261 GKILMGSLFGGL-K---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  322 (326)
Q Consensus       261 ~~~i~~~~~~~~-~---~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~vv  322 (326)
                      ...+........ .   ..+.++++++++++|++++.  ++++||++++.+|++.+++++.. |+||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~~--i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   63 GRSIRYSFLFSVDPNAIRAEALEELAELVAEGKLKPP--IDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             CHHCEEECCC-H--HHHHHHHHHHHHHHHHTTSS-----EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             ccceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEEe--eccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            222222221110 0   12459999999999976654  88899999999999999998876 9986

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.66  E-value=1.8e-07  Score=82.97  Aligned_cols=163  Identities=21%  Similarity=0.316  Sum_probs=100.1

Q ss_pred             hcccCCCCEEEEEccCHHHHHHHHHHHHcCCC-EEEEEcCChhHHHHHHhc----CCcEEEcCCCCCCccHHHHHHHhcC
Q 020435          134 TANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       134 ~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~-~V~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++++++||.+|+|+ |..+.++++..+.. +|++++.+++..+.+++.    +...+-.. .   .++. .+ .+.+
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~-~---~d~~-~l-~~~~  144 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFR-L---GEIE-AL-PVAD  144 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEE-E---cchh-hC-CCCC
Confidence            46688999999999987 88888888887653 799999999998887753    33222111 1   1221 11 1123


Q ss_pred             CCccEEEE-cC-----CcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHH
Q 020435          209 GGADYCFE-CV-----GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILL  282 (326)
Q Consensus       209 ~g~d~v~d-~~-----g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  282 (326)
                      +.+|+|+. ++     .....+..+.+.|+++ |+++..+..... .  +.  ..+.+...+.+...+.   .....++.
T Consensus       145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~~~-~--~~--~~~~~~~~~~~~~~~~---~~~~~e~~  215 (272)
T PRK11873        145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVLRG-E--LP--EEIRNDAELYAGCVAG---ALQEEEYL  215 (272)
T ss_pred             CceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeeccC-C--CC--HHHHHhHHHHhccccC---CCCHHHHH
Confidence            38999984 32     3345689999999998 999998754322 1  11  1111122222221111   12455666


Q ss_pred             HHHhC-CCCCCCcceeeeeccccHHHHHHHH
Q 020435          283 KRYMD-KELELDKFVTHEMKFEEINSAFDLL  312 (326)
Q Consensus       283 ~l~~~-g~~~~~~~i~~~~~l~~i~~a~~~~  312 (326)
                      +++++ |-..........++++++.++++.+
T Consensus       216 ~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~  246 (272)
T PRK11873        216 AMLAEAGFVDITIQPKREYRIPDAREFLEDW  246 (272)
T ss_pred             HHHHHCCCCceEEEeccceecccHHHHHHHh
Confidence            66665 4333333344567889999999988

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.53  E-value=7.8e-07  Score=84.43  Aligned_cols=108  Identities=19%  Similarity=0.250  Sum_probs=82.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCC----------CCCccHHHHHHHh
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKN----------CGDKSVSQIIIDM  206 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~----------~~~~~~~~~i~~~  206 (326)
                      .++++|+|+|+|.+|++++++++.+|+ .|+++++++++++.++.+|++.+ ++..+          ...+++.+..++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            357899999999999999999999999 89999999999999999998653 22211          0012344444444


Q ss_pred             cC---CCccEEEEcC---CcHH---HHHHHHHHhhcCCcEEEEeccCCCC
Q 020435          207 TD---GGADYCFECV---GLAS---LVQEAYACCRKGWGKTIVLGVDQPG  247 (326)
Q Consensus       207 ~~---~g~d~v~d~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~~  247 (326)
                      +.   .++|+||+|+   |.+.   ..+..++.++++ +.++.++...++
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~GG  289 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQGG  289 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCCC
Confidence            43   2899999999   5432   467889999998 999999875544

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.35  E-value=2.1e-08  Score=94.04  Aligned_cols=156  Identities=17%  Similarity=0.183  Sum_probs=103.3

Q ss_pred             ccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccccccc
Q 020435           11 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS   90 (326)
Q Consensus        11 i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~   90 (326)
                      --|.|+++.+.+|+++.+.     +|++-+.. ||.|.+|    ++.|.....   .|...++                 
T Consensus        89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~l~~-----------------  138 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKVLER-----------------  138 (417)
T ss_pred             cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHHHHH-----------------
Confidence            3578889999999998876     44444445 8899988    344443333   4545555                 


Q ss_pred             cccccceEEecccceEE---c-CCCCCccccccccchhhhhhhh---hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC
Q 020435           91 VSSFSEYTVLDIAHVVK---V-DPTVPPNRACLLSCGVSTGVGA---AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG  163 (326)
Q Consensus        91 ~g~~a~~~~v~~~~~~~---i-p~~~s~~~aa~l~~~~~ta~~~---l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g  163 (326)
                        .|++++.++. .+..   | +..+|            .++.+   ..+.....++++|+|+|+|.+|..+++.++..|
T Consensus       139 --lf~~a~~~~k-~vr~~t~i~~~~vS------------v~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G  203 (417)
T TIGR01035       139 --LFQKAFSVGK-RVRTETDISAGAVS------------ISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKG  203 (417)
T ss_pred             --HHHHHHHHhh-hhhhhcCCCCCCcC------------HHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCC
Confidence              8999888876 3332   2 22222            22222   223333457899999999999999999999999


Q ss_pred             CCEEEEEcCChhHHH-HHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHH
Q 020435          164 ATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  222 (326)
Q Consensus       164 ~~~V~~~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~  222 (326)
                      +.+|+++.++.++.+ .++.+|.. .++.     .++.+.+.     ++|+||+|.+.+.
T Consensus       204 ~~~V~v~~rs~~ra~~la~~~g~~-~i~~-----~~l~~~l~-----~aDvVi~aT~s~~  252 (417)
T TIGR01035       204 VGKILIANRTYERAEDLAKELGGE-AVKF-----EDLEEYLA-----EADIVISSTGAPH  252 (417)
T ss_pred             CCEEEEEeCCHHHHHHHHHHcCCe-EeeH-----HHHHHHHh-----hCCEEEECCCCCC
Confidence            658999999988755 56667753 3322     12222221     6999999998765

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.19  E-value=2.4e-05  Score=70.17  Aligned_cols=96  Identities=20%  Similarity=0.295  Sum_probs=75.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+.+++|+|.|.+|+.+++.++.+|+ +|++.++++++.++++.+|++.+ ..     .++.+.+    . ++|+||+|+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~-----~~l~~~l----~-~aDiVI~t~  218 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL-----SELAEEV----G-KIDIIFNTI  218 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH-----HHHHHHh----C-CCCEEEECC
Confidence            58999999999999999999999999 99999999988888888887532 21     1222222    1 699999999


Q ss_pred             CcHHHHHHHHHHhhcCCcEEEEeccCCCC
Q 020435          219 GLASLVQEAYACCRKGWGKTIVLGVDQPG  247 (326)
Q Consensus       219 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  247 (326)
                      +........++.++++ +.++.++...+.
T Consensus       219 p~~~i~~~~l~~~~~g-~vIIDla~~pgg  246 (296)
T PRK08306        219 PALVLTKEVLSKMPPE-ALIIDLASKPGG  246 (296)
T ss_pred             ChhhhhHHHHHcCCCC-cEEEEEccCCCC
Confidence            8766556778889998 999999875443

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.19  E-value=4.2e-05  Score=66.95  Aligned_cols=131  Identities=21%  Similarity=0.216  Sum_probs=83.3

Q ss_pred             cccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcC
Q 020435           93 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus        93 ~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      +|.+|.. +...++++++++++..+.--. ... ....+.  ....++++||-.|+|. |.+++.+++ .|+.+|++++.
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~t-t~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDi  150 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGTHPT-TRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDI  150 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCCCHH-HHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEEC
Confidence            4666644 677889999998877654211 111 111111  1256889999999987 877776554 56657999999


Q ss_pred             ChhHHHHHHhc----CCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH---HHHHHHHHHhhcCCcEEEEeccC
Q 020435          173 ISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA---SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       173 ~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++...+.+++.    +....+....   .+          ..+|+|+......   ..++.+.+.|+++ |.+++.+..
T Consensus       151 s~~~l~~A~~n~~~~~~~~~~~~~~---~~----------~~fD~Vvani~~~~~~~l~~~~~~~Lkpg-G~lilsgi~  215 (250)
T PRK00517        151 DPQAVEAARENAELNGVELNVYLPQ---GD----------LKADVIVANILANPLLELAPDLARLLKPG-GRLILSGIL  215 (250)
T ss_pred             CHHHHHHHHHHHHHcCCCceEEEcc---CC----------CCcCEEEEcCcHHHHHHHHHHHHHhcCCC-cEEEEEECc
Confidence            99988877542    2211111111   00          0599998655543   2356788899998 999988653

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.17  E-value=2.6e-05  Score=72.73  Aligned_cols=101  Identities=22%  Similarity=0.250  Sum_probs=77.0

Q ss_pred             hhhhhhhcccC-CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHh
Q 020435          128 VGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       128 ~~~l~~~~~~~-~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      |.++.+..++. .|++|+|.|.|.+|..+++.++.+|+ +|+++++++.+...+...|.+ +.        ++.+.+   
T Consensus       199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~--------~l~eal---  265 (425)
T PRK05476        199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VM--------TMEEAA---  265 (425)
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ec--------CHHHHH---
Confidence            44444443544 89999999999999999999999999 999999988887666666653 22        122222   


Q ss_pred             cCCCccEEEEcCCcHHHHH-HHHHHhhcCCcEEEEeccC
Q 020435          207 TDGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       207 ~~~g~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~  244 (326)
                        .++|+||+|.|....+. ..+..++++ +.++..|..
T Consensus       266 --~~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~  301 (425)
T PRK05476        266 --ELGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHF  301 (425)
T ss_pred             --hCCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCC
Confidence              16999999999887665 678899998 888888764

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.15  E-value=7.5e-06  Score=73.99  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=79.7

Q ss_pred             ceEEcCCCCCccccccccchhhhhhhhhhhhccc----CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHH-H
Q 020435          104 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANV----EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF-E  178 (326)
Q Consensus       104 ~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~----~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~-~  178 (326)
                      ..+++|+.++.+.++... +.+++++++ +.+..    .++.+|+|+|+|.+|..+++.++..|..+|+++.+++++. +
T Consensus       140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av-~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~  217 (311)
T cd05213         140 KAIKVGKRVRTETGISRG-AVSISSAAV-ELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE  217 (311)
T ss_pred             HHHHHHHHHhhhcCCCCC-CcCHHHHHH-HHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            677889999988888766 677787764 33332    3689999999999999999999988766899999998875 5


Q ss_pred             HHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHH
Q 020435          179 IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL  223 (326)
Q Consensus       179 ~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~  223 (326)
                      .++++|.. +++.     +++.+.+.     .+|+||.|++.+..
T Consensus       218 la~~~g~~-~~~~-----~~~~~~l~-----~aDvVi~at~~~~~  251 (311)
T cd05213         218 LAKELGGN-AVPL-----DELLELLN-----EADVVISATGAPHY  251 (311)
T ss_pred             HHHHcCCe-EEeH-----HHHHHHHh-----cCCEEEECCCCCch
Confidence            56778873 3322     12222221     58999999998874

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.10  E-value=5e-05  Score=70.49  Aligned_cols=100  Identities=23%  Similarity=0.277  Sum_probs=76.3

Q ss_pred             hhhhhhcc-cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhc
Q 020435          129 GAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       129 ~~l~~~~~-~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      .++.+..+ ...|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...++..|+. +.+        ..+.+    
T Consensus       183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~--------leeal----  248 (406)
T TIGR00936       183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT--------MEEAA----  248 (406)
T ss_pred             HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC--------HHHHH----
Confidence            33334434 3579999999999999999999999999 899999888877666666762 321        22222    


Q ss_pred             CCCccEEEEcCCcHHHHH-HHHHHhhcCCcEEEEeccC
Q 020435          208 DGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       208 ~~g~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~  244 (326)
                       .+.|++|++.|....+. ..+..++++ +.++..|..
T Consensus       249 -~~aDVVItaTG~~~vI~~~~~~~mK~G-ailiN~G~~  284 (406)
T TIGR00936       249 -KIGDIFITATGNKDVIRGEHFENMKDG-AIVANIGHF  284 (406)
T ss_pred             -hcCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEECCC
Confidence             25899999999988776 488899998 888888764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=3.3e-05  Score=64.53  Aligned_cols=119  Identities=18%  Similarity=0.207  Sum_probs=84.6

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHH----HHHhcCCcE
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFGVTE  187 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~----~~~~~g~~~  187 (326)
                      ++....-.++-+...|.  |.+...++++++||-+|+|. |+.++-|++..+  +|+.+.+.++=.+    .++.+|.+.
T Consensus        47 lpi~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n  121 (209)
T COG2518          47 LPIGCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN  121 (209)
T ss_pred             ccCCCCceecCcHHHHH--HHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence            33334444555656654  67889999999999999887 999999999988  7999999887433    355678644


Q ss_pred             EEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          188 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       188 vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      |.....   +.    -+.+... .||.|+-+.+.+..-+.+++.|+++ |+++.--.
T Consensus       122 V~v~~g---DG----~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~PvG  170 (209)
T COG2518         122 VTVRHG---DG----SKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIPVG  170 (209)
T ss_pred             eEEEEC---Cc----ccCCCCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEEEc
Confidence            432222   11    1223334 8999998888777567899999998 99887643

>PLN02494 adenosylhomocysteinase

Probab=97.95  E-value=0.0001  Score=69.18  Aligned_cols=101  Identities=18%  Similarity=0.231  Sum_probs=77.9

Q ss_pred             hhhhhhhccc-CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHh
Q 020435          128 VGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       128 ~~~l~~~~~~-~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      +-++.+..++ -.|++|+|.|.|.+|..+++.++.+|+ +|+++++++.+...+...|... +        ++.+.+.  
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~v-v--------~leEal~--  308 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQV-L--------TLEDVVS--  308 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCee-c--------cHHHHHh--
Confidence            3334454443 579999999999999999999999999 8999998887766666667642 2        1222222  


Q ss_pred             cCCCccEEEEcCCcHHH-HHHHHHHhhcCCcEEEEeccC
Q 020435          207 TDGGADYCFECVGLASL-VQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       207 ~~~g~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~  244 (326)
                         ..|+++++.+.... ....+..++++ +.++.+|..
T Consensus       309 ---~ADVVI~tTGt~~vI~~e~L~~MK~G-AiLiNvGr~  343 (477)
T PLN02494        309 ---EADIFVTTTGNKDIIMVDHMRKMKNN-AIVCNIGHF  343 (477)
T ss_pred             ---hCCEEEECCCCccchHHHHHhcCCCC-CEEEEcCCC
Confidence               58999999998774 47899999998 999999863

>PRK08324 short chain dehydrogenase; Validated

Probab=97.94  E-value=0.00011  Score=73.59  Aligned_cols=137  Identities=19%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             cccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEc
Q 020435           93 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  171 (326)
Q Consensus        93 ~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~  171 (326)
                      ++.+|..+++..++.+ +.++.+++.....+          .....+++++||+|+ |.+|..+++.+...|+ +|++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            5567777887777777 66666666422100          122236789999986 9999999999999999 999999


Q ss_pred             CChhHHHHHHh-cCC---cEE--EcCCCCCCccHHHHHHHhc--CCCccEEEEcCCc-----------------------
Q 020435          172 VISEKFEIGKR-FGV---TEF--VNSKNCGDKSVSQIIIDMT--DGGADYCFECVGL-----------------------  220 (326)
Q Consensus       172 ~~~~~~~~~~~-~g~---~~v--i~~~~~~~~~~~~~i~~~~--~~g~d~v~d~~g~-----------------------  220 (326)
                      ++.++.+.+.+ ++.   ...  .|..+  ...+.+.+.+..  .+++|++|+++|.                       
T Consensus       454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd--~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~  531 (681)
T PRK08324        454 LDEEAAEAAAAELGGPDRALGVACDVTD--EAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNAT  531 (681)
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEecCCC--HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhH
Confidence            99887665433 332   112  23322  122333333332  2389999999982                       


Q ss_pred             --HHHHHHHHHHhhc---CCcEEEEeccC
Q 020435          221 --ASLVQEAYACCRK---GWGKTIVLGVD  244 (326)
Q Consensus       221 --~~~~~~~~~~l~~---~~G~~v~~g~~  244 (326)
                        ....+.++..+++   + |+++.++..
T Consensus       532 g~~~l~~~~~~~l~~~~~~-g~iV~vsS~  559 (681)
T PRK08324        532 GHFLVAREAVRIMKAQGLG-GSIVFIASK  559 (681)
T ss_pred             HHHHHHHHHHHHHHhcCCC-cEEEEECCc
Confidence              1224455666666   5 789998864

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.89  E-value=0.00013  Score=65.02  Aligned_cols=94  Identities=18%  Similarity=0.244  Sum_probs=70.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+++++|+|.|.+|.++++.++.+|+ +|++..+++++.+.+...|... +..     .++.+.+     .++|+||+|.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~-~~~-----~~l~~~l-----~~aDiVint~  217 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIP-FPL-----NKLEEKV-----AEIDIVINTI  217 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee-ecH-----HHHHHHh-----ccCCEEEECC
Confidence            47899999999999999999999999 9999999988877776666532 211     1222222     2699999998


Q ss_pred             CcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          219 GLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       219 g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      +....-...++.++++ ..++.++...
T Consensus       218 P~~ii~~~~l~~~k~~-aliIDlas~P  243 (287)
T TIGR02853       218 PALVLTADVLSKLPKH-AVIIDLASKP  243 (287)
T ss_pred             ChHHhCHHHHhcCCCC-eEEEEeCcCC
Confidence            7655345677788887 8888887653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=97.82  E-value=0.0011  Score=59.21  Aligned_cols=139  Identities=10%  Similarity=0.085  Sum_probs=88.5

Q ss_pred             cccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcc---cCCCCEEEEEcc-CHHHHHHHHHHH-HcCCCEE
Q 020435           93 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN---VEVGSTVVIFGL-GSIGLAVAEGAR-LCGATRI  167 (326)
Q Consensus        93 ~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~---~~~~~~vlI~Ga-g~~G~~a~~la~-~~g~~~V  167 (326)
                      .|-+|.++..+..+. | ... ..-+++-..+.|+|. +.+...   .-..+.|+|.+| +-+++.++..++ ..+.-++
T Consensus        90 ~YN~Y~r~~~d~~y~-~-~~e-~~~~LlrPLf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~  165 (314)
T PF11017_consen   90 IYNQYLRVSADPAYD-P-ERE-DWQMLLRPLFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV  165 (314)
T ss_pred             hhhceeecCCCcccC-c-chh-HHHHHHHHHHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence            566777776554331 1 111 122233336677775 343332   223467777776 788888888887 4443389


Q ss_pred             EEEcCChhHHHHHHhcC-CcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          168 IGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       168 ~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      +++. |+.+.+..+.+| .+.|+.+++         |.++....--+++|..|+......+...++...-..+.+|...
T Consensus       166 vglT-S~~N~~Fve~lg~Yd~V~~Yd~---------i~~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th  234 (314)
T PF11017_consen  166 VGLT-SARNVAFVESLGCYDEVLTYDD---------IDSLDAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATH  234 (314)
T ss_pred             EEEe-cCcchhhhhccCCceEEeehhh---------hhhccCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccC
Confidence            9988 667777999999 578988876         2233223556778999999988888888888623356666543

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.75  E-value=0.00031  Score=64.97  Aligned_cols=99  Identities=20%  Similarity=0.219  Sum_probs=70.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+.. ++........+  ..++.+.+     ..+|++|+|
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~--~~~l~~~l-----~~aDvVI~a  237 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN--AYEIEDAV-----KRADLLIGA  237 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC--HHHHHHHH-----ccCCEEEEc
Confidence            35679999999999999999999999 89999999888777643 55432222221  12222222     269999999


Q ss_pred             CC---c--HH-HHHHHHHHhhcCCcEEEEeccCCC
Q 020435          218 VG---L--AS-LVQEAYACCRKGWGKTIVLGVDQP  246 (326)
Q Consensus       218 ~g---~--~~-~~~~~~~~l~~~~G~~v~~g~~~~  246 (326)
                      ++   .  +. .....++.++++ +.++.++...+
T Consensus       238 ~~~~g~~~p~lit~~~l~~mk~g-~vIvDva~d~G  271 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQG  271 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcCCCC-CEEEEEecCCC
Confidence            73   2  22 236777889998 99999986543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.67  E-value=0.00043  Score=65.16  Aligned_cols=98  Identities=20%  Similarity=0.295  Sum_probs=74.1

Q ss_pred             hhhhcc-cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC
Q 020435          131 AWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       131 l~~~~~-~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      +.+..+ .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+.. .        ++.+.+ +    
T Consensus       244 ~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~-~--------~leell-~----  308 (476)
T PTZ00075        244 IFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQV-V--------TLEDVV-E----  308 (476)
T ss_pred             HHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCcee-c--------cHHHHH-h----
Confidence            444433 3469999999999999999999999999 8999988877665554456532 1        222222 1    


Q ss_pred             CccEEEEcCCcHHHHH-HHHHHhhcCCcEEEEeccC
Q 020435          210 GADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       210 g~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~  244 (326)
                      .+|+|+.+.+....+. ..+..++++ +.++.+|..
T Consensus       309 ~ADIVI~atGt~~iI~~e~~~~MKpG-AiLINvGr~  343 (476)
T PTZ00075        309 TADIFVTATGNKDIITLEHMRRMKNN-AIVGNIGHF  343 (476)
T ss_pred             cCCEEEECCCcccccCHHHHhccCCC-cEEEEcCCC
Confidence            5899999999877664 889999998 999999864

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.62  E-value=9.3e-05  Score=69.82  Aligned_cols=160  Identities=19%  Similarity=0.185  Sum_probs=95.6

Q ss_pred             ccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccccccc
Q 020435           11 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS   90 (326)
Q Consensus        11 i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~   90 (326)
                      --|||+++.+.+|+++.+..-+|+.=+      |+.|...    ++.|.....   .|...++                 
T Consensus        91 ~~g~ea~~hl~~V~~GldS~V~GE~qI------lgQvk~a----~~~a~~~g~---~g~~l~~-----------------  140 (423)
T PRK00045         91 HEGEEAVRHLFRVASGLDSMVLGEPQI------LGQVKDA----YALAQEAGT---VGTILNR-----------------  140 (423)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhcCChHH------HHHHHHH----HHHHHHcCC---chHHHHH-----------------
Confidence            358999999999999887755555432      3333321    111111110   1212222                 


Q ss_pred             cccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcc---cCCCCEEEEEccCHHHHHHHHHHHHcCCCEE
Q 020435           91 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN---VEVGSTVVIFGLGSIGLAVAEGARLCGATRI  167 (326)
Q Consensus        91 ~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~---~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V  167 (326)
                        .|++.+.+        |+.+..+.+. ...+.+++++++.....   -.++++|+|+|+|.+|.++++.++..|+.+|
T Consensus       141 --lf~~a~~~--------~k~v~~~t~i-~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V  209 (423)
T PRK00045        141 --LFQKAFSV--------AKRVRTETGI-GAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKI  209 (423)
T ss_pred             --HHHHHHHH--------HhhHhhhcCC-CCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeE
Confidence              45444433        3333333222 22255666666433222   2578999999999999999999999998689


Q ss_pred             EEEcCChhHHH-HHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHH
Q 020435          168 IGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  222 (326)
Q Consensus       168 ~~~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~  222 (326)
                      +++.++.++.+ +++.+|.+ +++..     ++.+.+     .++|+||+|++.+.
T Consensus       210 ~v~~r~~~ra~~la~~~g~~-~~~~~-----~~~~~l-----~~aDvVI~aT~s~~  254 (423)
T PRK00045        210 TVANRTLERAEELAEEFGGE-AIPLD-----ELPEAL-----AEADIVISSTGAPH  254 (423)
T ss_pred             EEEeCCHHHHHHHHHHcCCc-EeeHH-----HHHHHh-----ccCCEEEECCCCCC
Confidence            99999988865 56667753 33221     122222     26999999998765

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.61  E-value=5.2e-05  Score=74.36  Aligned_cols=80  Identities=19%  Similarity=0.271  Sum_probs=58.5

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC---------------------hhHHHHHHhcCCcEEEcCCCC
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---------------------SEKFEIGKRFGVTEFVNSKNC  194 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~---------------------~~~~~~~~~~g~~~vi~~~~~  194 (326)
                      ...+|++|+|+|+|++|+++++.++..|+ +|++++..                     +.+.+.++++|++..++... 
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~-  210 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV-  210 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE-
Confidence            36789999999999999999999999999 89888743                     24556678899876665322 


Q ss_pred             CCccH-HHHHHHhcCCCccEEEEcCCcHH
Q 020435          195 GDKSV-SQIIIDMTDGGADYCFECVGLAS  222 (326)
Q Consensus       195 ~~~~~-~~~i~~~~~~g~d~v~d~~g~~~  222 (326)
                       ..+. .+.+    ..++|+||+++|...
T Consensus       211 -~~~~~~~~~----~~~~D~Vi~AtG~~~  234 (564)
T PRK12771        211 -GEDITLEQL----EGEFDAVFVAIGAQL  234 (564)
T ss_pred             -CCcCCHHHH----HhhCCEEEEeeCCCC
Confidence             0111 1222    127999999999764

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.59  E-value=0.00028  Score=55.60  Aligned_cols=74  Identities=24%  Similarity=0.300  Sum_probs=55.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc--EEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      ++.+++|+|+|++|.+++..+...|+++++++.|+.++.+.+ ..++..  .++..++     +.+.+.     .+|+||
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~-----~~~~~~-----~~DivI   80 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED-----LEEALQ-----EADIVI   80 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG-----HCHHHH-----TESEEE
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH-----HHHHHh-----hCCeEE
Confidence            588999999999999999999999997899999999987765 445322  3444433     212221     699999


Q ss_pred             EcCCcHH
Q 020435          216 ECVGLAS  222 (326)
Q Consensus       216 d~~g~~~  222 (326)
                      +|.+.++
T Consensus        81 ~aT~~~~   87 (135)
T PF01488_consen   81 NATPSGM   87 (135)
T ss_dssp             E-SSTTS
T ss_pred             EecCCCC
Confidence            9988764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.57  E-value=0.00045  Score=58.95  Aligned_cols=79  Identities=22%  Similarity=0.289  Sum_probs=59.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCC----cEEEcCCCCCCccHHHHHHHhcCC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV----TEFVNSKNCGDKSVSQIIIDMTDG--G  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~----~~vi~~~~~~~~~~~~~i~~~~~~--g  210 (326)
                      +++.++|+|| +++|.+.++.+...|+ +|+.+.|..++++.+. +++.    ...+|..+  .....+.+..+..+  .
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD--~~~~~~~i~~~~~~~g~   81 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD--RAAVEAAIEALPEEFGR   81 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC--HHHHHHHHHHHHHhhCc
Confidence            3578999998 8999999999999999 9999999999998764 4662    23344444  23444455555555  7


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+.++.+|-
T Consensus        82 iDiLvNNAGl   91 (246)
T COG4221          82 IDILVNNAGL   91 (246)
T ss_pred             ccEEEecCCC
Confidence            9999998885

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.56  E-value=0.0005  Score=61.50  Aligned_cols=97  Identities=20%  Similarity=0.249  Sum_probs=63.8

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc----CCc-EEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-EFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      ..++++||-.|+|. |.+++.+++ .|+.+|++++.++...+.+++.    +.. .+.....    +    ......+++
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~----~----~~~~~~~~f  226 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI----Y----LEQPIEGKA  226 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec----c----cccccCCCc
Confidence            45789999999887 777776665 4655899999999887776542    221 1111111    1    111223389


Q ss_pred             cEEEEcCCcH---HHHHHHHHHhhcCCcEEEEeccC
Q 020435          212 DYCFECVGLA---SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       212 d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      |+|+......   ..+..+.+.|+++ |.++..+..
T Consensus       227 DlVvan~~~~~l~~ll~~~~~~Lkpg-G~li~sgi~  261 (288)
T TIGR00406       227 DVIVANILAEVIKELYPQFSRLVKPG-GWLILSGIL  261 (288)
T ss_pred             eEEEEecCHHHHHHHHHHHHHHcCCC-cEEEEEeCc
Confidence            9999655433   3456778999998 999987753

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.53  E-value=0.0018  Score=55.83  Aligned_cols=104  Identities=21%  Similarity=0.225  Sum_probs=67.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-Hh---cCCcEEEcCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KR---FGVTEFVNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~---~g~~~vi~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+++|||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ ..   .+..+.+..+-...+...+.+.+...  +++
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   82 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI   82 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            3679999987 9999999999999999 999999998877655 22   22223332221011223332332221  268


Q ss_pred             cEEEEcCCcH-----------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          212 DYCFECVGLA-----------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       212 d~v~d~~g~~-----------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      |.++.+.+..                       ...+.....++++ |+++.++..
T Consensus        83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~  137 (238)
T PRK05786         83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSM  137 (238)
T ss_pred             CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecc
Confidence            9999888741                       1244555667777 899998864

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.42  E-value=0.00083  Score=55.65  Aligned_cols=78  Identities=21%  Similarity=0.264  Sum_probs=58.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC---CcEEEcCCCCCCccHHH-HHHHhcCC--Cc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG---VTEFVNSKNCGDKSVSQ-IIIDMTDG--GA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g---~~~vi~~~~~~~~~~~~-~i~~~~~~--g~  211 (326)
                      .|.+|||+|+ ++||+.+++-...+|- +||...|++++++.+++.-   ...+.|..+   .+-.+ .+.++..+  ..
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d---~~~~~~lvewLkk~~P~l   79 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVAD---RDSRRELVEWLKKEYPNL   79 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccc---hhhHHHHHHHHHhhCCch
Confidence            4789999975 8999999999999997 9999999999999987643   344555555   33223 33333333  89


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      +++++++|-
T Consensus        80 NvliNNAGI   88 (245)
T COG3967          80 NVLINNAGI   88 (245)
T ss_pred             heeeecccc
Confidence            999999885

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.42  E-value=0.0018  Score=53.09  Aligned_cols=105  Identities=20%  Similarity=0.324  Sum_probs=72.2

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHHhc
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      +...++++++.++=+|+|. |...+++++.....+|++++++++..+..+    +||.+.+.....    +-.+.+....
T Consensus        27 ls~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g----~Ap~~L~~~~  101 (187)
T COG2242          27 LSKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG----DAPEALPDLP  101 (187)
T ss_pred             HHhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec----cchHhhcCCC
Confidence            3567889999888889865 667778886554459999999999888764    488764332221    1122222211


Q ss_pred             CCCccEEEEcCC--cHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          208 DGGADYCFECVG--LASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       208 ~~g~d~v~d~~g--~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                        .+|.+|=--|  -+..++.+|..|+++ |++|.-...
T Consensus       102 --~~daiFIGGg~~i~~ile~~~~~l~~g-grlV~nait  137 (187)
T COG2242         102 --SPDAIFIGGGGNIEEILEAAWERLKPG-GRLVANAIT  137 (187)
T ss_pred             --CCCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEeec
Confidence              6999984333  245688999999998 999987654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.39  E-value=0.0014  Score=60.94  Aligned_cols=110  Identities=17%  Similarity=0.251  Sum_probs=75.0

Q ss_pred             hhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHH
Q 020435          123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQI  202 (326)
Q Consensus       123 ~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~  202 (326)
                      .-...+..+.+..+++++++||.+|+|. |.++..+++..|+ +|++++.+++..+.+++.....-+....   .++.  
T Consensus       151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~-G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~---~D~~--  223 (383)
T PRK11705        151 AQEAKLDLICRKLQLKPGMRVLDIGCGW-GGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRL---QDYR--  223 (383)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEE---Cchh--
Confidence            3334455566778889999999999864 7777888888898 9999999999998887643211111111   1221  


Q ss_pred             HHHhcCCCccEEEEc-----CCc---HHHHHHHHHHhhcCCcEEEEecc
Q 020435          203 IIDMTDGGADYCFEC-----VGL---ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       203 i~~~~~~g~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                        .. .+.+|.|+..     ++.   ...++.+.+.|+|+ |.+++...
T Consensus       224 --~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~i  268 (383)
T PRK11705        224 --DL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHTI  268 (383)
T ss_pred             --hc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEEc
Confidence              11 2479998743     333   34578889999998 99988653

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.31  E-value=0.003  Score=53.13  Aligned_cols=103  Identities=19%  Similarity=0.389  Sum_probs=70.3

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHH----hcC-CcEEEcCCCCCCccHHHHHHH
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK----RFG-VTEFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~----~~g-~~~vi~~~~~~~~~~~~~i~~  205 (326)
                      .....+.++++||..|+|. |.+++.+++..+. .+|++++.+++..+.++    .++ .+.+....    .+..+.+..
T Consensus        33 l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~----~d~~~~l~~  107 (198)
T PRK00377         33 LSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK----GEAPEILFT  107 (198)
T ss_pred             HHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE----echhhhHhh
Confidence            3456788999999999988 8888888887642 38999999998887654    355 23222111    122222222


Q ss_pred             hcCCCccEEEEcCCc---HHHHHHHHHHhhcCCcEEEEe
Q 020435          206 MTDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       206 ~~~~g~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  241 (326)
                       ..+.+|.||...+.   ...+..+.+.|+++ |+++..
T Consensus       108 -~~~~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~  144 (198)
T PRK00377        108 -INEKFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVID  144 (198)
T ss_pred             -cCCCCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEEE
Confidence             22379999975543   34577888999998 998853

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.30  E-value=0.0046  Score=55.99  Aligned_cols=103  Identities=21%  Similarity=0.296  Sum_probs=72.3

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~  205 (326)
                      +.+...++++++||..|+|. |..++.+++..+. ..|++++.+++..+.++    ..|.+.+.....    +..+.+..
T Consensus        72 ll~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g----D~~~~~~~  146 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG----DGYYGVPE  146 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC----Chhhcccc
Confidence            44667788999999999984 9999999988763 26999999998766554    356554332221    22211111


Q ss_pred             hcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          206 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       206 ~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                        .+.+|+|+.+.+.........+.|+++ |+++..
T Consensus       147 --~~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~  179 (322)
T PRK13943        147 --FAPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  179 (322)
T ss_pred             --cCCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence              127999999888766566788999998 998764

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.28  E-value=0.002  Score=53.31  Aligned_cols=89  Identities=30%  Similarity=0.392  Sum_probs=62.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..++++++.+|+ +|++.+++....+.....+.. .        .++.+.+.+     .|+|+.+.
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~-~--------~~l~ell~~-----aDiv~~~~   99 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVE-Y--------VSLDELLAQ-----ADIVSLHL   99 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEE-E--------SSHHHHHHH------SEEEE-S
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccce-e--------eehhhhcch-----hhhhhhhh
Confidence            58999999999999999999999999 999999998877645555431 1        234443433     78998766


Q ss_pred             Cc-H----HHHHHHHHHhhcCCcEEEEecc
Q 020435          219 GL-A----SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~-~----~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .. +    .+-...+..++++ ..+|.++.
T Consensus       100 plt~~T~~li~~~~l~~mk~g-a~lvN~aR  128 (178)
T PF02826_consen  100 PLTPETRGLINAEFLAKMKPG-AVLVNVAR  128 (178)
T ss_dssp             SSSTTTTTSBSHHHHHTSTTT-EEEEESSS
T ss_pred             ccccccceeeeeeeeeccccc-eEEEeccc
Confidence            63 2    1234667888887 77776653

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.20  E-value=0.0026  Score=55.58  Aligned_cols=81  Identities=22%  Similarity=0.277  Sum_probs=56.6

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-----cCCc-EEEcCCCCCCccHHHHHH-HhcCC
Q 020435          138 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVT-EFVNSKNCGDKSVSQIII-DMTDG  209 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-----~g~~-~vi~~~~~~~~~~~~~i~-~~~~~  209 (326)
                      ..+.++||+|| ++||...+..+...|. +|+.+.|++++++.+.+     .+.+ +++.-|= .+.+-.+.+. ++...
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DL-s~~~~~~~l~~~l~~~   81 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADL-SDPEALERLEDELKER   81 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcC-CChhHHHHHHHHHHhc
Confidence            45789999998 8999999999999999 99999999999887643     2322 2332221 1123233333 33322


Q ss_pred             --CccEEEEcCCc
Q 020435          210 --GADYCFECVGL  220 (326)
Q Consensus       210 --g~d~v~d~~g~  220 (326)
                        .+|+.++++|-
T Consensus        82 ~~~IdvLVNNAG~   94 (265)
T COG0300          82 GGPIDVLVNNAGF   94 (265)
T ss_pred             CCcccEEEECCCc
Confidence              89999999995

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0023  Score=56.62  Aligned_cols=77  Identities=21%  Similarity=0.346  Sum_probs=54.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhcC--CCccEEEE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADYCFE  216 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~g~d~v~d  216 (326)
                      .++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+...+...+ .|..+  .+++.+.+.+...  +++|++++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~vi~   78 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVND--GAALARLAEELEAEHGGLDVLIN   78 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEEEE
Confidence            47899987 9999999999988999 99999999888777665554333 34333  2333333333322  37999999


Q ss_pred             cCCc
Q 020435          217 CVGL  220 (326)
Q Consensus       217 ~~g~  220 (326)
                      +.|.
T Consensus        79 ~ag~   82 (274)
T PRK05693         79 NAGY   82 (274)
T ss_pred             CCCC
Confidence            9883

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.17  E-value=0.00097  Score=56.53  Aligned_cols=109  Identities=19%  Similarity=0.270  Sum_probs=70.8

Q ss_pred             ccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC-EEEEEcCChhHHHHH----HhcCCcEE--EcCC
Q 020435          120 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIG----KRFGVTEF--VNSK  192 (326)
Q Consensus       120 l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~-~V~~~~~~~~~~~~~----~~~g~~~v--i~~~  192 (326)
                      ++.+...|  .+.+.+.+++|++||-+|+|. |+.++-+++..|.. +|+.+++.++-.+.+    +.++.+.+  +..+
T Consensus        55 is~P~~~a--~~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd  131 (209)
T PF01135_consen   55 ISAPSMVA--RMLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD  131 (209)
T ss_dssp             E--HHHHH--HHHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred             chHHHHHH--HHHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence            33344444  367888899999999999876 88888888887743 699999888755544    34565433  2221


Q ss_pred             CCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          193 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       193 ~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .     .    .-+... +||.|+-+.+-+..-...++.|+++ |++|..
T Consensus       132 g-----~----~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~p  171 (209)
T PF01135_consen  132 G-----S----EGWPEEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAP  171 (209)
T ss_dssp             G-----G----GTTGGG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEE
T ss_pred             h-----h----hccccCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEE
Confidence            1     0    111223 8999998777777567889999998 999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.0044  Score=54.95  Aligned_cols=78  Identities=18%  Similarity=0.277  Sum_probs=55.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHH---hcCCCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIID---MTDGGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~---~~~~g~d~  213 (326)
                      .+.+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+.+.+.+.+ .|..+  .+++.+.+.+   ..++.+|+
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAE--PESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCC--HHHHHHHHHHHHHHcCCCccE
Confidence            3578999997 9999999999888999 99999999988887766565432 23332  1222222332   23348999


Q ss_pred             EEEcCC
Q 020435          214 CFECVG  219 (326)
Q Consensus       214 v~d~~g  219 (326)
                      +++++|
T Consensus        80 li~~Ag   85 (277)
T PRK05993         80 LFNNGA   85 (277)
T ss_pred             EEECCC
Confidence            999876

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.12  E-value=0.007  Score=55.84  Aligned_cols=96  Identities=17%  Similarity=0.150  Sum_probs=69.9

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC---C-cEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG---V-TEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g---~-~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      .+|||+|+|.+|+.+++.+...+-.+|++.+++.++.+.+....   . ...+|..+  .+.+.+.|+     ++|+||+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d--~~al~~li~-----~~d~VIn   74 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD--VDALVALIK-----DFDLVIN   74 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC--hHHHHHHHh-----cCCEEEE
Confidence            57999999999999999988877449999999999998886653   2 23445444  222333332     4699999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      |.+.......+-.+++.+ =.++.+...
T Consensus        75 ~~p~~~~~~i~ka~i~~g-v~yvDts~~  101 (389)
T COG1748          75 AAPPFVDLTILKACIKTG-VDYVDTSYY  101 (389)
T ss_pred             eCCchhhHHHHHHHHHhC-CCEEEcccC
Confidence            999887565555777776 777777654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.09  E-value=0.0047  Score=52.31  Aligned_cols=101  Identities=14%  Similarity=0.167  Sum_probs=68.3

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQI  202 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~  202 (326)
                      +.+...++++++||-.|+|. |..+..+++..+ ..+|++++.+++..+.+++    .+..   .++..+.      .+.
T Consensus        64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~------~~~  136 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG------KRG  136 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc------ccC
Confidence            45667788999999999876 777777777764 2289999999887766543    4432   2333222      111


Q ss_pred             HHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          203 IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       203 i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +.  ..+.+|.|+-+.......+.+.+.|+++ |+++..
T Consensus       137 ~~--~~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~  172 (205)
T PRK13944        137 LE--KHAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP  172 (205)
T ss_pred             Cc--cCCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence            10  1128999996666556567888999998 998764

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.06  E-value=0.015  Score=47.95  Aligned_cols=93  Identities=18%  Similarity=0.247  Sum_probs=64.2

Q ss_pred             EEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc-
Q 020435          143 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL-  220 (326)
Q Consensus       143 vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~-  220 (326)
                      |+|.|+ |.+|..+++.+...|. +|++++|++++.+.  ..+.+ ++..+-   .+. +.+.+... ++|.||.+.+. 
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~-~~~~d~---~d~-~~~~~al~-~~d~vi~~~~~~   71 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVE-IIQGDL---FDP-DSVKAALK-GADAVIHAAGPP   71 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEE-EEESCT---TCH-HHHHHHHT-TSSEEEECCHST
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccc-cceeee---hhh-hhhhhhhh-hcchhhhhhhhh
Confidence            789998 9999999999999998 99999999998877  44443 333333   222 33343333 79999999984 


Q ss_pred             ---HHHHHHHHHHhhcC-CcEEEEeccC
Q 020435          221 ---ASLVQEAYACCRKG-WGKTIVLGVD  244 (326)
Q Consensus       221 ---~~~~~~~~~~l~~~-~G~~v~~g~~  244 (326)
                         .......++.++.. -.+++.++..
T Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~v~~s~~   99 (183)
T PF13460_consen   72 PKDVDAAKNIIEAAKKAGVKRVVYLSSA   99 (183)
T ss_dssp             TTHHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred             cccccccccccccccccccccceeeecc
Confidence               23355666666554 1367776643

...

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.04  E-value=0.0029  Score=55.61  Aligned_cols=107  Identities=20%  Similarity=0.324  Sum_probs=76.5

Q ss_pred             hhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccH
Q 020435          127 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSV  199 (326)
Q Consensus       127 a~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~  199 (326)
                      ++..+.+.+++++|++||=+|+|- |.+++.+|+..|+ +|++++-|++..+.+++    .|..   +++-.+-   .++
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~---rd~  134 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY---RDF  134 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc---ccc
Confidence            334467889999999999999877 7788899999999 99999999998777654    4532   1221111   111


Q ss_pred             HHHHHHhcCCCccEEE-----EcCCc---HHHHHHHHHHhhcCCcEEEEeccCCCC
Q 020435          200 SQIIIDMTDGGADYCF-----ECVGL---ASLVQEAYACCRKGWGKTIVLGVDQPG  247 (326)
Q Consensus       200 ~~~i~~~~~~g~d~v~-----d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~~  247 (326)
                             . +.||-|+     +.+|.   +..+..+.+.|+++ |++.+.......
T Consensus       135 -------~-e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~~~  181 (283)
T COG2230         135 -------E-EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITGPD  181 (283)
T ss_pred             -------c-cccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecCCC
Confidence                   1 2477774     35554   44588899999998 999998775544

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.03  E-value=0.01  Score=49.43  Aligned_cols=100  Identities=19%  Similarity=0.168  Sum_probs=63.3

Q ss_pred             hcccCCCCEEEEEccCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhcCC-C
Q 020435          134 TANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDG-G  210 (326)
Q Consensus       134 ~~~~~~~~~vlI~Gag~~G~~a~~la~~-~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~-g  210 (326)
                      ...++++++||.+|+|+-+. +..+++. .+..+|++++.++..    +..+.+.+ .+..+   ....+.+.+..+. +
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~-~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~---~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGW-SQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD---EEVLNKIRERVGDDK   98 (188)
T ss_pred             hcccCCCCEEEEecCCCCHH-HHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC---hhHHHHHHHHhCCCC
Confidence            45578999999999877444 4444443 343389999988754    11233322 13222   3444555555555 8


Q ss_pred             ccEEEE-cC----Cc------------HHHHHHHHHHhhcCCcEEEEec
Q 020435          211 ADYCFE-CV----GL------------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       211 ~d~v~d-~~----g~------------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +|+|+. ..    |.            ...+..+.++|+++ |+++...
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~  146 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKV  146 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEE
Confidence            999994 32    21            34577889999998 9998864

>PRK00536 speE spermidine synthase; Provisional

Probab=97.02  E-value=0.003  Score=55.32  Aligned_cols=99  Identities=12%  Similarity=-0.045  Sum_probs=69.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCC-cEEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~-~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      ...++|||+|+|- |.++-.++|+. . +|+.++-+++-.+.+++ ++. ...++...   -.+...+.+...+.+|+||
T Consensus        71 ~~pk~VLIiGGGD-Gg~~REvLkh~-~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR---v~l~~~~~~~~~~~fDVII  144 (262)
T PRK00536         71 KELKEVLIVDGFD-LELAHQLFKYD-T-HVDFVQADEKILDSFISFFPHFHEVKNNKN---FTHAKQLLDLDIKKYDLII  144 (262)
T ss_pred             CCCCeEEEEcCCc-hHHHHHHHCcC-C-eeEEEECCHHHHHHHHHHCHHHHHhhcCCC---EEEeehhhhccCCcCCEEE
Confidence            4578999998766 56677888885 3 89999999988888887 331 11222222   2222233333334899997


Q ss_pred             -EcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          216 -ECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       216 -d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       |+...+..++.+.++|+++ |.++.-+.
T Consensus       145 vDs~~~~~fy~~~~~~L~~~-Gi~v~Qs~  172 (262)
T PRK00536        145 CLQEPDIHKIDGLKRMLKED-GVFISVAK  172 (262)
T ss_pred             EcCCCChHHHHHHHHhcCCC-cEEEECCC
Confidence             8788888889999999998 99988754

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.02  E-value=0.0028  Score=47.77  Aligned_cols=94  Identities=23%  Similarity=0.301  Sum_probs=62.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHHh-c---C-CcEEEcCCCCCCccHHHHHHHhcCCCcc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKR-F---G-VTEFVNSKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~-~g~~~V~~~~~~~~~~~~~~~-~---g-~~~vi~~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      |+++||-.|+|. |.+++.+++. .++ +|++++.+++..+.+++ .   + .+.+--..    .++ . ......+++|
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~----~d~-~-~~~~~~~~~D   72 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQ----GDA-E-FDPDFLEPFD   72 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE----SCC-H-GGTTTSSCEE
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE----Ccc-c-cCcccCCCCC
Confidence            578999999876 7788888884 677 99999999998887754 2   2 12221111    122 1 1111122899


Q ss_pred             EEEEcC-Cc---H------HHHHHHHHHhhcCCcEEEEe
Q 020435          213 YCFECV-GL---A------SLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       213 ~v~d~~-g~---~------~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +|+... ..   .      ..++.+.+.|+++ |+++..
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi~  110 (112)
T PF12847_consen   73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVIN  110 (112)
T ss_dssp             EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEEE
Confidence            999766 21   1      2377889999998 998764

...

>PRK06182 short chain dehydrogenase; Validated

Probab=96.99  E-value=0.0044  Score=54.71  Aligned_cols=79  Identities=19%  Similarity=0.278  Sum_probs=55.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhc--CCCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMT--DGGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~--~~g~d~v  214 (326)
                      ++.+++|+|+ |.+|..+++.+...|. +|+++++++++.+.+...+...+ .|..+  .+++.+.+.+..  .+++|++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~~~id~l   78 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTD--EASIKAAVDTIIAEEGRIDVL   78 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEE
Confidence            3578999997 9999999999988999 99999999888776655454322 23333  233333343332  2389999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      ++++|.
T Consensus        79 i~~ag~   84 (273)
T PRK06182         79 VNNAGY   84 (273)
T ss_pred             EECCCc
Confidence            999874

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.96  E-value=0.017  Score=56.06  Aligned_cols=105  Identities=14%  Similarity=0.130  Sum_probs=66.1

Q ss_pred             hcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh---------cCC-----cEEEcCCCCCCcc
Q 020435          134 TANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---------FGV-----TEFVNSKNCGDKS  198 (326)
Q Consensus       134 ~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~---------~g~-----~~vi~~~~~~~~~  198 (326)
                      ..+.+.|.+|||+|+ |.+|..+++.+...|. +|++++++.++.+.+.+         .|.     ..++..+-   .+
T Consensus        74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDL---tD  149 (576)
T PLN03209         74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDL---EK  149 (576)
T ss_pred             ccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecC---CC
Confidence            455678899999997 9999999999988998 99999999887654321         121     11222111   11


Q ss_pred             HHHHHHHhcCCCccEEEEcCCcHH---------------HHHHHHHHhhcC-CcEEEEeccC
Q 020435          199 VSQIIIDMTDGGADYCFECVGLAS---------------LVQEAYACCRKG-WGKTIVLGVD  244 (326)
Q Consensus       199 ~~~~i~~~~~~g~d~v~d~~g~~~---------------~~~~~~~~l~~~-~G~~v~~g~~  244 (326)
                       .+.+.+.. +++|+||+++|...               ....+++.+... .++||.++..
T Consensus       150 -~esI~~aL-ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSi  209 (576)
T PLN03209        150 -PDQIGPAL-GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSL  209 (576)
T ss_pred             -HHHHHHHh-cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence             22333333 37999999987531               122334444332 2689988764

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.0058  Score=52.30  Aligned_cols=77  Identities=14%  Similarity=0.177  Sum_probs=52.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEE--cCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV--NSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .+++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+++++...++  |..+  .+++.+.+..+..+++|+++.+
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~id~vi~~   78 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMND--PASLDQLLQRLQGQRFDLLFVN   78 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCC--HHHHHHHHHHhhcCCCCEEEEc
Confidence            47899987 9999999998888899 999999988777666554322222  2222  1223333333333489999988


Q ss_pred             CCc
Q 020435          218 VGL  220 (326)
Q Consensus       218 ~g~  220 (326)
                      +|.
T Consensus        79 ag~   81 (225)
T PRK08177         79 AGI   81 (225)
T ss_pred             Ccc
Confidence            754

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.95  E-value=0.0024  Score=54.46  Aligned_cols=100  Identities=18%  Similarity=0.286  Sum_probs=69.0

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i  203 (326)
                      +.....++++++||-+|+|. |..+..+++..+. .+|++++.+++-.+.+++    .|..  .++..+.   ..     
T Consensus        68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~---~~-----  138 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG---TL-----  138 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---cc-----
Confidence            56677889999999999876 7777777877653 289999999988776653    3432  2332221   00     


Q ss_pred             HHhcC-CCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          204 IDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       204 ~~~~~-~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                       .... +.+|.|+-........+...+.|+++ |+++..
T Consensus       139 -~~~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~  175 (212)
T PRK13942        139 -GYEENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP  175 (212)
T ss_pred             -CCCcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence             1112 28999985554455467889999998 998875

>PRK12742 oxidoreductase; Provisional

Probab=96.93  E-value=0.024  Score=48.69  Aligned_cols=100  Identities=23%  Similarity=0.280  Sum_probs=62.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHH-HhcCCcEE-EcCCCCCCccHHHHHHHhcCCCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG-KRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~~-~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      .+++|||+|+ |.+|..+++.+...|+ +|+.+.+ ++++.+.+ .+++...+ .|..+  .+.+.+.+.+.  +++|++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~~--~~id~l   79 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD--RDAVIDVVRKS--GALDIL   79 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC--HHHHHHHHHHh--CCCcEE
Confidence            3679999987 9999999999999999 8877754 44444443 44554322 22222  12233333221  379999


Q ss_pred             EEcCCcHH-------------------------HHHHHHHHhhcCCcEEEEeccC
Q 020435          215 FECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       215 ~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      |+++|...                         ..+.+...++.. |+++.++..
T Consensus        80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~isS~  133 (237)
T PRK12742         80 VVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEG-GRIIIIGSV  133 (237)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcC-CeEEEEecc
Confidence            99887421                         012334456676 899988764

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.92  E-value=0.016  Score=48.46  Aligned_cols=104  Identities=19%  Similarity=0.184  Sum_probs=71.5

Q ss_pred             CCCEEEEEc-c-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCc-EEEcCCCCCCccH---HHHHHHhcCCCc
Q 020435          139 VGSTVVIFG-L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFVNSKNCGDKSV---SQIIIDMTDGGA  211 (326)
Q Consensus       139 ~~~~vlI~G-a-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~-~vi~~~~~~~~~~---~~~i~~~~~~g~  211 (326)
                      ....|||+| + |+||.+++.-....|+ .|+++.|+-+....+. ++|.. .-+|..+  +++.   ..+++..+.|..
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~--~~~V~~v~~evr~~~~Gkl   82 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSK--PEEVVTVSGEVRANPDGKL   82 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCC--hHHHHHHHHHHhhCCCCce
Confidence            467899997 4 9999999888888999 9999999999888765 67632 2334333  2333   345555566699


Q ss_pred             cEEEEcCCcH--------------------------HHHHHHHHHhhcCCcEEEEeccCCC
Q 020435          212 DYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVDQP  246 (326)
Q Consensus       212 d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~~~  246 (326)
                      |+.++.+|.+                          ..-.....+++.- |++|.+|...+
T Consensus        83 d~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaK-GtIVnvgSl~~  142 (289)
T KOG1209|consen   83 DLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAK-GTIVNVGSLAG  142 (289)
T ss_pred             EEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHcc-ceEEEecceeE
Confidence            9999877752                          1011123456675 99999987643

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.90  E-value=0.019  Score=43.85  Aligned_cols=102  Identities=22%  Similarity=0.321  Sum_probs=67.9

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~  204 (326)
                      +.....+.++++||-.|+|. |..+..+++..+..+|++++.++...+.+++    .+..  .++..+.   ...   ..
T Consensus        11 ~~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~---~~   83 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA---PEA---LE   83 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc---ccc---Ch
Confidence            34455667788999999877 8888888988653489999999988777643    3332  2222221   110   11


Q ss_pred             HhcCCCccEEEEcCCc---HHHHHHHHHHhhcCCcEEEEe
Q 020435          205 DMTDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      . ..+.+|+|+.....   ...++.+.+.|+++ |.++..
T Consensus        84 ~-~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~  121 (124)
T TIGR02469        84 D-SLPEPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLN  121 (124)
T ss_pred             h-hcCCCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEE
Confidence            1 11279999865432   23578899999998 998865

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0058  Score=55.76  Aligned_cols=79  Identities=27%  Similarity=0.354  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcE-EE--cCCCCCCccHHHHHHHhc--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~--~  208 (326)
                      .++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+    ++.|.+. ++  |..+  .+++.+.+.+..  .
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   82 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD--ADQVKALATQAASFG   82 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHhc
Confidence            4679999997 8999999999999999 899999998876543    3345432 22  3222  122222222221  2


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|+++|.
T Consensus        83 g~iD~lVnnAG~   94 (330)
T PRK06139         83 GRIDVWVNNVGV   94 (330)
T ss_pred             CCCCEEEECCCc
Confidence            489999999884

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0067  Score=52.89  Aligned_cols=81  Identities=16%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cC-CcEEEcCCCCCCccHHHHHHHhc--CCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FG-VTEFVNSKNCGDKSVSQIIIDMT--DGG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~i~~~~--~~g  210 (326)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+++.+++++.+.+..    .+ ..+++..+-...+++.+.+.+..  .++
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            4789999987 9999999999999999 89999998887654432    12 11233222101233333333322  137


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+++++.+.
T Consensus        87 ~d~li~~ag~   96 (258)
T PRK06949         87 IDILVNNSGV   96 (258)
T ss_pred             CCEEEECCCC
Confidence            9999998883

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.017  Score=50.67  Aligned_cols=79  Identities=22%  Similarity=0.319  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+ +.++.. ..+  |..+  .+++.+.+.+...  +.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   81 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITD--DAAIERAVATVVARFGRV   81 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4679999987 9999999999999999 999999988765544 344422 222  2222  2333333333322  379


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |+++++.|.
T Consensus        82 d~lv~~ag~   90 (261)
T PRK08265         82 DILVNLACT   90 (261)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.02  Score=49.19  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcC---CcEEEcCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG---VTEFVNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g---~~~vi~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +++.   .-+.+..+-.+..++.+.+.+...  +++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL   83 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            3678999987 9999999998888899 899999988776544 3332   112222121012333333433322  279


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++|++.+.
T Consensus        84 d~vi~~ag~   92 (237)
T PRK07326         84 DVLIANAGV   92 (237)
T ss_pred             CEEEECCCC
Confidence            999998764

>PRK08017 oxidoreductase; Provisional

Probab=96.86  E-value=0.0049  Score=53.69  Aligned_cols=77  Identities=23%  Similarity=0.325  Sum_probs=54.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccH---HHHHHHhcCCCccEEE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSV---SQIIIDMTDGGADYCF  215 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~---~~~i~~~~~~g~d~v~  215 (326)
                      +++||+|+ |.+|..+++.+...|. +|++++++.++.+.+++.+++.+ .|..+  ...+   .+.+.+...+.+|.++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~~~~~ii   79 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDD--PESVERAADEVIALTDNRLYGLF   79 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCC--HHHHHHHHHHHHHhcCCCCeEEE
Confidence            47999998 9999999999999999 89999999988887777775433 23322  1222   2233333334789988


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      .+.+.
T Consensus        80 ~~ag~   84 (256)
T PRK08017         80 NNAGF   84 (256)
T ss_pred             ECCCC
Confidence            88763

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.028  Score=51.35  Aligned_cols=79  Identities=19%  Similarity=0.159  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcE-E--EcCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ++.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+    +..|.+. .  .|..+  .+++.+.+.+...  
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d--~~~v~~~~~~~~~~~   83 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD--AEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC--HHHHHHHHHHHHHHC
Confidence            4679999987 9999999999988999 899999988776543    3345332 2  23322  1223332332221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|++++.
T Consensus        84 g~iD~lInnAg~   95 (334)
T PRK07109         84 GPIDTWVNNAMV   95 (334)
T ss_pred             CCCCEEEECCCc
Confidence            379999998874

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.024  Score=49.09  Aligned_cols=101  Identities=18%  Similarity=0.190  Sum_probs=61.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh-HHHH----HHhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFEI----GKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~-~~~~----~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |.+|..+++.+...|. +|+++.++.+ +.+.    ++..+.. ..+  |..+  .++..+.+.+... 
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD--EESVAALMDTAREE   81 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHh
Confidence            3679999997 9999999999888998 8988887653 2222    2222322 222  2222  1223333333222 


Q ss_pred             -CCccEEEEcCCcH-------------------HHHHHHHHHhhcCCcEEEEecc
Q 020435          209 -GGADYCFECVGLA-------------------SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       209 -~g~d~v~d~~g~~-------------------~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +++|+++.+.+..                   ..++.+...+... |+++.++.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence             2799999877542                   2344455555666 88888765

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.0076  Score=52.59  Aligned_cols=79  Identities=24%  Similarity=0.340  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcEE-EcCCCCCCccHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      ++.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.. .+++...+ .|..+  .+.+.+.+.+...  +++|+
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTD--EDAVNALFDTAAETYGSVDI   82 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4789999997 9999999999999999 999999888776544 33443221 23332  1223333333221  37999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      ++.++|.
T Consensus        83 vi~~ag~   89 (255)
T PRK06057         83 AFNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998863

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.011  Score=50.98  Aligned_cols=77  Identities=19%  Similarity=0.328  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEE-EcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~v-i~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      ++.+++|+|+ |.+|..+++.+...|. +|++++++.++.+.+.+ .+...+ .|..+   ....+.+.+. .+++|++|
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~-~~~~d~vi   82 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGD---DAAIRAALAA-AGAFDGLV   82 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCC---HHHHHHHHHH-hCCCCEEE
Confidence            4679999997 8999999999999999 89999998877765543 444322 23332   2222222221 13799999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      ++.+.
T Consensus        83 ~~ag~   87 (245)
T PRK07060         83 NCAGI   87 (245)
T ss_pred             ECCCC
Confidence            98874

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.75  E-value=0.033  Score=49.20  Aligned_cols=110  Identities=23%  Similarity=0.301  Sum_probs=70.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcE-E--E--cCCCCCCccHHHHHHHhc-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--V--NSKNCGDKSVSQIIIDMT-  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~-v--i--~~~~~~~~~~~~~i~~~~-  207 (326)
                      .+.+|+|+|| ++||.+++.-.-..|+ +++.+.+..++++.+    ++.+... +  +  |..+  .++..+.+.+.. 
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~--~~~~~~~~~~~~~   87 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD--EESVKKFVEWAIR   87 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC--HHHHHHHHHHHHH
Confidence            4789999998 8999998888888999 888888888877665    3344322 2  2  2222  233333332222 


Q ss_pred             -CCCccEEEEcCCcH-------------------------HHHHHHHHHhhcCC-cEEEEeccCCCCCccc
Q 020435          208 -DGGADYCFECVGLA-------------------------SLVQEAYACCRKGW-GKTIVLGVDQPGSQLS  251 (326)
Q Consensus       208 -~~g~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~  251 (326)
                       -+++|+.++.+|-.                         ...+.++..|++.. |+++.++...+....+
T Consensus        88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P  158 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLP  158 (282)
T ss_pred             hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCC
Confidence             23999999988741                         13445555555543 8999988755433333

>PLN02366 spermidine synthase

Probab=96.74  E-value=0.02  Score=51.55  Aligned_cols=99  Identities=15%  Similarity=0.183  Sum_probs=65.6

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CC---------cEEEcCCCCCCccHHHHHHHh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV---------TEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~---------~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ...+++|||+|+|. |.++..++++.+..+|.+++.+++-.+.+++. ..         -.++.      .+..+.+++.
T Consensus        89 ~~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~------~Da~~~l~~~  161 (308)
T PLN02366         89 IPNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHI------GDGVEFLKNA  161 (308)
T ss_pred             CCCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEE------ChHHHHHhhc
Confidence            35678999998766 55677788886655899999888877777662 21         11221      2233334433


Q ss_pred             cCCCccEEE-EcCC---------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          207 TDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       207 ~~~g~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .++.+|+|| |+..         ....++.+.+.|+++ |.++..+.
T Consensus       162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q~~  207 (308)
T PLN02366        162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQAE  207 (308)
T ss_pred             cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEECcC
Confidence            334899998 5433         234578889999998 99976543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.73  E-value=0.025  Score=48.03  Aligned_cols=107  Identities=19%  Similarity=0.221  Sum_probs=73.7

Q ss_pred             hcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhcC
Q 020435          134 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       134 ~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      .++...+.+||=+|.+ +|..++++|..+. -.+++.++.++++.+.+++    .|.+..+..-.  ..+..+.+.+...
T Consensus        54 L~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~--~gdal~~l~~~~~  130 (219)
T COG4122          54 LARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL--GGDALDVLSRLLD  130 (219)
T ss_pred             HHHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe--cCcHHHHHHhccC
Confidence            3455678899988854 3788888888776 3389999999998887754    56544221111  0245566665334


Q ss_pred             CCccEEE-EcCCc--HHHHHHHHHHhhcCCcEEEEeccC
Q 020435          209 GGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       209 ~g~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +.+|.|| |+.-.  +..++.+++.|+++ |.++.=...
T Consensus       131 ~~fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~DNvl  168 (219)
T COG4122         131 GSFDLVFIDADKADYPEYLERALPLLRPG-GLIVADNVL  168 (219)
T ss_pred             CCccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEEeecc
Confidence            5999998 76554  55689999999998 887765443

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=96.73  E-value=0.0036  Score=55.38  Aligned_cols=99  Identities=19%  Similarity=0.307  Sum_probs=62.5

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc---EEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT---EFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~---~vi~~~~~~~~~~~~~i  203 (326)
                      +.+.+++++|++||-+|+|- |.++..+++..|+ +|+++..|++..+.++    +.|..   .+..      .++.   
T Consensus        54 ~~~~~~l~~G~~vLDiGcGw-G~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~------~D~~---  122 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCGW-GGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRL------QDYR---  122 (273)
T ss_dssp             HHTTTT--TT-EEEEES-TT-SHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE------S-GG---
T ss_pred             HHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE------eecc---
Confidence            56788999999999999874 6677788888899 9999999999888764    34521   2221      1121   


Q ss_pred             HHhcCCCccEEEE-----cCCc---HHHHHHHHHHhhcCCcEEEEecc
Q 020435          204 IDMTDGGADYCFE-----CVGL---ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       204 ~~~~~~g~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       ++. +.+|.|+.     .+|.   +..++.+.+.|+|+ |++++-..
T Consensus       123 -~~~-~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq~i  167 (273)
T PF02353_consen  123 -DLP-GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQTI  167 (273)
T ss_dssp             -G----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEEEE
T ss_pred             -ccC-CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEEec
Confidence             111 27999864     3432   34588999999998 99986554

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.72  E-value=0.017  Score=47.15  Aligned_cols=97  Identities=19%  Similarity=0.220  Sum_probs=63.1

Q ss_pred             cccccchhhhhhhhhhhhcccCCCCEEEEEccCH-HHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCC
Q 020435          117 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  195 (326)
Q Consensus       117 aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~-~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~  195 (326)
                      ....++...++...+.+...--.+.+|||+|+|. +|..++++++..|+ +|+++.++.+                    
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~--------------------   79 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTK--------------------   79 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCch--------------------
Confidence            3445544343433222332234789999999986 59989999999999 8888876521                    


Q ss_pred             CccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          196 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       196 ~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                        ++.+.+.     .+|+||.+++.++.+..  ..++++ -.++.++..
T Consensus        80 --~l~~~l~-----~aDiVIsat~~~~ii~~--~~~~~~-~viIDla~p  118 (168)
T cd01080          80 --NLKEHTK-----QADIVIVAVGKPGLVKG--DMVKPG-AVVIDVGIN  118 (168)
T ss_pred             --hHHHHHh-----hCCEEEEcCCCCceecH--HHccCC-eEEEEccCC
Confidence              1222222     48999999999874433  346776 777777764

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.71  E-value=0.009  Score=57.59  Aligned_cols=74  Identities=23%  Similarity=0.252  Sum_probs=54.6

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      +.++++|+|+|.|.+|++++++++..|+ +|++.+..+++.+.+++.|+.. +....     ..+.+.     .+|+|+.
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~-~~~~~-----~~~~l~-----~~D~VV~   76 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVAT-VSTSD-----AVQQIA-----DYALVVT   76 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEE-EcCcc-----hHhHhh-----cCCEEEE
Confidence            4568899999999999999999999999 9999997766666677778743 32211     111221     4799999


Q ss_pred             cCCcHH
Q 020435          217 CVGLAS  222 (326)
Q Consensus       217 ~~g~~~  222 (326)
                      +.|-+.
T Consensus        77 SpGi~~   82 (488)
T PRK03369         77 SPGFRP   82 (488)
T ss_pred             CCCCCC
Confidence            888643

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.71  E-value=0.027  Score=48.59  Aligned_cols=107  Identities=21%  Similarity=0.361  Sum_probs=74.0

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhcC
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      ....+.+|++||=+|+|. |-.+..+++..|..+|++++.+++.++.+++    .+... +..-.   .+ ++.+. ..+
T Consensus        45 ~~~~~~~g~~vLDva~GT-Gd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~---~d-Ae~LP-f~D  117 (238)
T COG2226          45 SLLGIKPGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVV---GD-AENLP-FPD  117 (238)
T ss_pred             HhhCCCCCCEEEEecCCc-cHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEE---ec-hhhCC-CCC
Confidence            445566899999997765 8999999999886699999999999888764    22221 11101   11 11111 222


Q ss_pred             CCccEEEEcCCc------HHHHHHHHHHhhcCCcEEEEeccCCCC
Q 020435          209 GGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGVDQPG  247 (326)
Q Consensus       209 ~g~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~~~  247 (326)
                      ..||+|.-+.|-      +.++.++.+.|+|+ |+++.+....+.
T Consensus       118 ~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~p~  161 (238)
T COG2226         118 NSFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSKPD  161 (238)
T ss_pred             CccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCCCC
Confidence            389999766653      44688999999998 999999876543

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.034  Score=48.04  Aligned_cols=79  Identities=20%  Similarity=0.241  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ++.++||+|+ |.+|..++..+...|+ +|+++++++++.+.+    +..+.. .++  |..+  .+++.+.+.+...  
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD--PASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4689999987 9999999999988999 899999887765543    223322 222  2222  1222222222211  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|.++|.
T Consensus        83 ~~id~vi~~ag~   94 (250)
T PRK12939         83 GGLDGLVNNAGI   94 (250)
T ss_pred             CCCCEEEECCCC
Confidence            379999999875

>PRK14967 putative methyltransferase; Provisional

Probab=96.68  E-value=0.12  Score=44.25  Aligned_cols=98  Identities=18%  Similarity=0.197  Sum_probs=64.2

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EEEcCCCCCCccHHHHHHHhc
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ....++++++||-.|+|. |..+..+++. +..+|++++.+++..+.++.    .+.. .+++      .++.+.   ..
T Consensus        30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~------~d~~~~---~~   98 (223)
T PRK14967         30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR------GDWARA---VE   98 (223)
T ss_pred             HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE------Cchhhh---cc
Confidence            345577889999999987 8888888875 54489999999988776543    3332 2222      122221   12


Q ss_pred             CCCccEEEEcCCc---------------------------HHHHHHHHHHhhcCCcEEEEec
Q 020435          208 DGGADYCFECVGL---------------------------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ~~g~d~v~d~~g~---------------------------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+.+|+|+...+-                           ...+..+.+.|+++ |+++++.
T Consensus        99 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~~  159 (223)
T PRK14967         99 FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLVQ  159 (223)
T ss_pred             CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence            2389999864210                           12345678899998 9988763

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.67  E-value=0.015  Score=50.00  Aligned_cols=105  Identities=21%  Similarity=0.258  Sum_probs=75.3

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~  205 (326)
                      +...+++.+|++|+=.|.|+ |.+.+.||++.|. ++|+..+..++..+.+++    +|....+....   .+.    .+
T Consensus        86 I~~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~---~Dv----~~  157 (256)
T COG2519          86 IVARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL---GDV----RE  157 (256)
T ss_pred             HHHHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe---ccc----cc
Confidence            34568899999999888766 8888889998765 599999998888776643    44322222111   222    22


Q ss_pred             hcCC-CccEEE-EcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          206 MTDG-GADYCF-ECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       206 ~~~~-g~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ...+ .+|.|| |-..--..++.+.+.|+++ |.++.+...
T Consensus       158 ~~~~~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P~  197 (256)
T COG2519         158 GIDEEDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSPT  197 (256)
T ss_pred             cccccccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcCC
Confidence            2223 799987 7777667789999999998 999998643

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.67  E-value=0.0087  Score=52.33  Aligned_cols=81  Identities=23%  Similarity=0.287  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCc--EEE--cCCCCCCccHHHHHHHhcC--C
Q 020435          138 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT--EFV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~--~vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      -++.++||+|+ |.+|..+++.+...|. +|+.+.++++..+.+.+ ....  .++  |..+  ..++.+.+.+...  +
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   85 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVAD--PAQVERVFDTAVERFG   85 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC--HHHHHHHHHHHHHHhC
Confidence            46789999987 9999999999999999 89999998776665443 2211  222  2222  1222222322211  3


Q ss_pred             CccEEEEcCCcH
Q 020435          210 GADYCFECVGLA  221 (326)
Q Consensus       210 g~d~v~d~~g~~  221 (326)
                      ++|+||.+.+..
T Consensus        86 ~~d~vi~~ag~~   97 (264)
T PRK12829         86 GLDVLVNNAGIA   97 (264)
T ss_pred             CCCEEEECCCCC
Confidence            799999988753

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.66  E-value=0.0052  Score=52.41  Aligned_cols=100  Identities=18%  Similarity=0.247  Sum_probs=67.1

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCCcE--EEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i  203 (326)
                      +.+...++++++||-+|+|. |..++.+++..+. .+|++++.+++..+.+++    .|.+.  ++..+.      .+. 
T Consensus        69 ~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~------~~~-  140 (215)
T TIGR00080        69 MTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG------TQG-  140 (215)
T ss_pred             HHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc------ccC-
Confidence            55667889999999998866 6666777777653 269999999887776643    44332  222211      110 


Q ss_pred             HHhcC-CCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          204 IDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       204 ~~~~~-~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                        ... +.||+|+-............+.|+++ |+++..
T Consensus       141 --~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~  176 (215)
T TIGR00080       141 --WEPLAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP  176 (215)
T ss_pred             --CcccCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence              111 27999985544455467888999998 998765

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.66  E-value=0.013  Score=52.57  Aligned_cols=81  Identities=23%  Similarity=0.299  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEEcCCCCCCccHHHHHHHhc--CCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFVNSKNCGDKSVSQIIIDMT--DGG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi~~~~~~~~~~~~~i~~~~--~~g  210 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++.++.+.+.    ..+.+ ..+..+-.+.+++.+.+.+..  -++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  117 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGG  117 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            3578999987 9999999999988899 9999999987765442    22322 222222101122333333221  137


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++|+|.
T Consensus       118 id~li~~AG~  127 (293)
T PRK05866        118 VDILINNAGR  127 (293)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.011  Score=52.99  Aligned_cols=79  Identities=20%  Similarity=0.299  Sum_probs=53.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcC--CcE-E--EcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG--VTE-F--VNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g--~~~-v--i~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++  .+. .  .|..+  .++..+.+.+...  +
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTD--LAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC--HHHHHHHHHHHHHHcC
Confidence            4789999987 9999999999999999 999999988876654 3344  211 1  23322  1223333333322  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            79999999884

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.012  Score=51.89  Aligned_cols=78  Identities=23%  Similarity=0.233  Sum_probs=52.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcEEE--cCCCCCCccHHHHHHHhcC--CCccE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFV--NSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~vi--~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      +.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ +.++..+++  |..+  .+++.+.+.+...  +++|+
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   81 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTD--PASFAAFLDAVEADLGPIDV   81 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            579999997 9999999998888899 899999988877654 334411222  3322  2333333333321  38999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +++++|.
T Consensus        82 li~~ag~   88 (273)
T PRK07825         82 LVNNAGV   88 (273)
T ss_pred             EEECCCc
Confidence            9999874

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.64  E-value=0.012  Score=51.64  Aligned_cols=79  Identities=24%  Similarity=0.287  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      ++.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+.+ ++.. ..+  |..+  .++..+.+.+...  +.+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   81 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTS--YADNQRAVDQTVDAFGKL   81 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHhcCCC
Confidence            4679999987 8999999999999999 89999998887766543 3321 222  2222  1233333333322  379


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        82 d~li~~ag~   90 (263)
T PRK06200         82 DCFVGNAGI   90 (263)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.62  E-value=0.059  Score=45.16  Aligned_cols=103  Identities=20%  Similarity=0.358  Sum_probs=64.0

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHh----cCCcE--EEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i  203 (326)
                      +....+++++++||=.|+|. |..++.+++.. +. +|++++.+++..+.+++    ++...  ++..      +..+.+
T Consensus        32 l~~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~-~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~------d~~~~~  103 (196)
T PRK07402         32 LISQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKG-RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG------SAPECL  103 (196)
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC------chHHHH
Confidence            45566778899999888754 44555566654 44 99999999988777653    45432  3322      222222


Q ss_pred             HHhcCCCccEE-EEcCCc-HHHHHHHHHHhhcCCcEEEEecc
Q 020435          204 IDMTDGGADYC-FECVGL-ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       204 ~~~~~~g~d~v-~d~~g~-~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..+. ..+|.+ ++.... ...++.+.+.|+++ |.++....
T Consensus       104 ~~~~-~~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~  143 (196)
T PRK07402        104 AQLA-PAPDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATAS  143 (196)
T ss_pred             hhCC-CCCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEee
Confidence            2222 233444 443322 35578889999998 99988754

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.013  Score=51.45  Aligned_cols=79  Identities=16%  Similarity=0.189  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.    ..+.. +++  |..+  .+.+.+.+.+...  
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   85 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH--PEATAGLAGQAVEAF   85 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 8999999999988999 9999999887655432    22321 222  3222  1222222333221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|++++.
T Consensus        86 ~~id~vi~~Ag~   97 (263)
T PRK07814         86 GRLDIVVNNVGG   97 (263)
T ss_pred             CCCCEEEECCCC
Confidence            379999998873

>PRK00811 spermidine synthase; Provisional

Probab=96.60  E-value=0.015  Score=51.80  Aligned_cols=96  Identities=15%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-C-----C--c---EEEcCCCCCCccHHHHHHHh
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-G-----V--T---EFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g-----~--~---~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ..+++||++|+|. |..+..+++..+..+|++++.+++-.+.+++. .     .  +   +++.      .+..+.+.. 
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~------~Da~~~l~~-  146 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI------GDGIKFVAE-  146 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE------CchHHHHhh-
Confidence            3578999998866 66677777776666899999999888877652 1     1  1   1222      223333433 


Q ss_pred             cCCCccEEE-EcCC---------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          207 TDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       207 ~~~g~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ..+.+|+|+ |+..         ....++.+.+.|+++ |.++...
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~~  191 (283)
T PRK00811        147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQS  191 (283)
T ss_pred             CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEeC
Confidence            334899998 4321         134467888999998 9988753

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.58  E-value=0.037  Score=46.07  Aligned_cols=96  Identities=18%  Similarity=0.226  Sum_probs=61.7

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      ++++.+||-.|+|. |..+..+++.. +. +|++++.+++..+.+++    .+.+.+ ....   .+..+ +..  .+.+
T Consensus        43 l~~g~~VLDiGcGt-G~~al~la~~~~~~-~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~~---~d~~~-~~~--~~~f  113 (187)
T PRK00107         43 LPGGERVLDVGSGA-GFPGIPLAIARPEL-KVTLVDSLGKKIAFLREVAAELGLKNV-TVVH---GRAEE-FGQ--EEKF  113 (187)
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHHHCCCC-eEEEEeCcHHHHHHHHHHHHHcCCCCE-EEEe---ccHhh-CCC--CCCc
Confidence            45589999998765 56566666554 45 99999999987776653    444322 1111   22221 111  2389


Q ss_pred             cEEEEc-CCc-HHHHHHHHHHhhcCCcEEEEec
Q 020435          212 DYCFEC-VGL-ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       212 d~v~d~-~g~-~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      |+|+.. ... +..+..+.+.|+++ |.++.+-
T Consensus       114 DlV~~~~~~~~~~~l~~~~~~LkpG-G~lv~~~  145 (187)
T PRK00107        114 DVVTSRAVASLSDLVELCLPLLKPG-GRFLALK  145 (187)
T ss_pred             cEEEEccccCHHHHHHHHHHhcCCC-eEEEEEe
Confidence            999953 322 34577889999998 9998874

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.57  E-value=0.014  Score=51.16  Aligned_cols=78  Identities=18%  Similarity=0.198  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      ++.+++|+|+ |++|..+++.+...|+ +|++++++.++.+.+.+. +.. +.+  |..+  ..+..+.+.+...  +.+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS--LDDHKEAVARCVAAFGKI   80 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            4689999987 8999999999989999 999999988777665542 321 122  2222  1223333433322  379


Q ss_pred             cEEEEcCC
Q 020435          212 DYCFECVG  219 (326)
Q Consensus       212 d~v~d~~g  219 (326)
                      |+++++.|
T Consensus        81 d~li~~Ag   88 (262)
T TIGR03325        81 DCLIPNAG   88 (262)
T ss_pred             CEEEECCC
Confidence            99999886

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.013  Score=51.11  Aligned_cols=81  Identities=22%  Similarity=0.241  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc--EEEcCCCCCCccHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.++++++..+...++...  ..+..+-...+++.+.+.+...  +++|+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4679999997 9999999999988999 899999987765544443211  1222221012223333333222  27999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      ++.++|.
T Consensus        93 vi~~ag~   99 (255)
T PRK06841         93 LVNSAGV   99 (255)
T ss_pred             EEECCCC
Confidence            9998874

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.56  E-value=0.013  Score=54.92  Aligned_cols=75  Identities=16%  Similarity=0.116  Sum_probs=54.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      -.+.+|||+|+|.+|.+++..+...|+.+++++.|+.++.+.+ ..++...++..+         .+.+.. ..+|+||+
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~---------~l~~~l-~~aDiVI~  248 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLS---------ELPQLI-KKADIIIA  248 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHH---------HHHHHh-ccCCEEEE
Confidence            3578999999999999999999999977899999998876654 445522233221         122211 15999999


Q ss_pred             cCCcHH
Q 020435          217 CVGLAS  222 (326)
Q Consensus       217 ~~g~~~  222 (326)
                      |.+.++
T Consensus       249 aT~a~~  254 (414)
T PRK13940        249 AVNVLE  254 (414)
T ss_pred             CcCCCC
Confidence            999877

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.02  Score=50.07  Aligned_cols=83  Identities=23%  Similarity=0.277  Sum_probs=51.3

Q ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHc-CCCEEEEEcCChhH-HHH----HHhcCC--cEEEcCCCCCCccHHHHHHHhc
Q 020435          137 VEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEK-FEI----GKRFGV--TEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       137 ~~~~~~vlI~Ga-g~~G~~a~~la~~~-g~~~V~~~~~~~~~-~~~----~~~~g~--~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      +..+.+|||+|+ |++|..+++.+... |+ +|+++++++++ .+.    ++..+.  -+++..+-.+..+..+.+.+..
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence            456789999987 99999999877666 57 99999988765 332    333332  1233222101223333344333


Q ss_pred             C-CCccEEEEcCCc
Q 020435          208 D-GGADYCFECVGL  220 (326)
Q Consensus       208 ~-~g~d~v~d~~g~  220 (326)
                      . +++|+++++.|.
T Consensus        84 ~~g~id~li~~ag~   97 (253)
T PRK07904         84 AGGDVDVAIVAFGL   97 (253)
T ss_pred             hcCCCCEEEEeeec
Confidence            2 489999987764

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.55  E-value=0.014  Score=51.62  Aligned_cols=98  Identities=19%  Similarity=0.247  Sum_probs=72.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CCc-EEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      ++.+|.|+|+|.+|.-++++|.-+|+ +|+.++.+.+++..+..+ +.+ +..-...   .++.+.+.     +.|++|.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st~---~~iee~v~-----~aDlvIg  237 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYSTP---SNIEEAVK-----KADLVIG  237 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcCH---HHHHHHhh-----hccEEEE
Confidence            35688899999999999999999999 999999999999888774 332 2222222   34444443     4899987


Q ss_pred             cCCcH------HHHHHHHHHhhcCCcEEEEeccCCC
Q 020435          217 CVGLA------SLVQEAYACCRKGWGKTIVLGVDQP  246 (326)
Q Consensus       217 ~~g~~------~~~~~~~~~l~~~~G~~v~~g~~~~  246 (326)
                      ++=-+      -..++.++.++|+ +.+|.+....+
T Consensus       238 aVLIpgakaPkLvt~e~vk~MkpG-sVivDVAiDqG  272 (371)
T COG0686         238 AVLIPGAKAPKLVTREMVKQMKPG-SVIVDVAIDQG  272 (371)
T ss_pred             EEEecCCCCceehhHHHHHhcCCC-cEEEEEEEcCC
Confidence            54321      2367889999998 99999987543

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.54  E-value=0.019  Score=49.71  Aligned_cols=81  Identities=16%  Similarity=0.263  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH--HHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcC--CCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GGAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~--~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g~d  212 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.++++...  .+.+++.+.. ..+..+-.+.+++.+.+.+...  +++|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4789999997 8999999999998999 89999886522  2334444432 2222111012333333333322  3799


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      ++++++|.
T Consensus        83 ~li~~ag~   90 (248)
T TIGR01832        83 ILVNNAGI   90 (248)
T ss_pred             EEEECCCC
Confidence            99998874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.54  E-value=0.015  Score=50.72  Aligned_cols=79  Identities=22%  Similarity=0.223  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EE--EcCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|..+++.+...|+ +|+.++++.++.+.+.    ..+.+ ..  .|..+  .+++.+.+.+...  
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ--HQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4789999987 8999999999999999 9999999887765442    22322 12  22222  1233333333221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|+++++.|.
T Consensus        85 g~id~lv~~ag~   96 (253)
T PRK05867         85 GGIDIAVCNAGI   96 (253)
T ss_pred             CCCCEEEECCCC
Confidence            389999998874

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.53  E-value=0.035  Score=52.89  Aligned_cols=79  Identities=25%  Similarity=0.406  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh--hHHHH-HHhcCCcE-EEcCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS--EKFEI-GKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~--~~~~~-~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++.+  ++.+. ..+++... ..|..+  .+...+.+.....  +++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~i  285 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITA--PDAPARIAEHLAERHGGL  285 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC--HHHHHHHHHHHHHhCCCC
Confidence            4789999987 9999999999999999 899888743  22222 23455432 234333  1222222222221  279


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++|++.|.
T Consensus       286 d~vi~~AG~  294 (450)
T PRK08261        286 DIVVHNAGI  294 (450)
T ss_pred             CEEEECCCc
Confidence            999999883

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.52  E-value=0.015  Score=50.31  Aligned_cols=81  Identities=20%  Similarity=0.207  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcC--Cc-EEEcCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG--VT-EFVNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g--~~-~vi~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |.+|..+++.+...|. +|+++++++++.+.+. .+.  .. +.+..+-.+..++.+.+.+...  +++
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   82 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV   82 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            3579999997 9999999999988899 8999999987765542 222  11 1222111012233333333211  279


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++|.+.+.
T Consensus        83 d~vi~~ag~   91 (251)
T PRK07231         83 DILVNNAGT   91 (251)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.018  Score=50.08  Aligned_cols=73  Identities=16%  Similarity=0.175  Sum_probs=50.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EE--EcCCCCCCccHHHHHHHhcCCCc
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF--VNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~v--i~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+++    .+.. .+  .|..+      .+.+.+...+++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~------~~~~~~~~~~~i   74 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD------AIDRAQAAEWDV   74 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC------HHHHHHHhcCCC
Confidence            458999987 9999999999999999 99999988776555432    2321 12  23222      223444433489


Q ss_pred             cEEEEcCC
Q 020435          212 DYCFECVG  219 (326)
Q Consensus       212 d~v~d~~g  219 (326)
                      |++|++.+
T Consensus        75 d~vi~~ag   82 (257)
T PRK09291         75 DVLLNNAG   82 (257)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.017  Score=50.65  Aligned_cols=81  Identities=25%  Similarity=0.362  Sum_probs=52.6

Q ss_pred             cCCCCEEEEEcc-C-HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----h-cCCcEE--E--cCCCCCCccHHHHHHH
Q 020435          137 VEVGSTVVIFGL-G-SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----R-FGVTEF--V--NSKNCGDKSVSQIIID  205 (326)
Q Consensus       137 ~~~~~~vlI~Ga-g-~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~-~g~~~v--i--~~~~~~~~~~~~~i~~  205 (326)
                      +..+.++||+|+ | ++|.++++.+...|+ +|+++++++++.+...    + ++...+  +  |..+  .+++.+.+.+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~   90 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS--EAQVDALIDA   90 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC--HHHHHHHHHH
Confidence            345789999986 6 799999999999999 8999998877655432    2 343222  2  2222  1223333332


Q ss_pred             hcC--CCccEEEEcCCc
Q 020435          206 MTD--GGADYCFECVGL  220 (326)
Q Consensus       206 ~~~--~g~d~v~d~~g~  220 (326)
                      ...  +++|++|++.|.
T Consensus        91 ~~~~~g~id~li~~ag~  107 (262)
T PRK07831         91 AVERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            221  379999999984

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.51  E-value=0.01  Score=48.59  Aligned_cols=103  Identities=18%  Similarity=0.201  Sum_probs=63.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcC-CCC-C------------CccHHHHHH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS-KNC-G------------DKSVSQIII  204 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~-~~~-~------------~~~~~~~i~  204 (326)
                      ++.+|+|+|+|.+|+.|+++++.+|+ +|+..+...++.+..+..+...+... .+. .            .......+.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            45799999999999999999999999 99999999888888877776433221 100 0            011222222


Q ss_pred             HhcCCCccEEEEc-CC-c---HH-HHHHHHHHhhcCCcEEEEeccC
Q 020435          205 DMTDGGADYCFEC-VG-L---AS-LVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       205 ~~~~~g~d~v~d~-~g-~---~~-~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +... .+|++|.+ .- +   +. .....++.|+++ ..++.++..
T Consensus        98 ~~i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~D  141 (168)
T PF01262_consen   98 EFIA-PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISCD  141 (168)
T ss_dssp             HHHH-H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTGG
T ss_pred             HHHh-hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEec
Confidence            2211 47888742 21 1   11 134667788887 778887654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.016  Score=51.25  Aligned_cols=79  Identities=18%  Similarity=0.186  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc--EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~--~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+....  ..+  |..+  .+.+.+.+.+...  +++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~~~   79 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTD--FDAIDAVVADAEATFGPI   79 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            3578999987 9999999999988999 899999998887665543211  122  3222  1223333333222  269


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        80 d~vv~~ag~   88 (277)
T PRK06180         80 DVLVNNAGY   88 (277)
T ss_pred             CEEEECCCc
Confidence            999999885

>PRK06196 oxidoreductase; Provisional

Probab=96.45  E-value=0.02  Score=51.82  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcEEE--cCCCCCCccHHHHHHHhcC--CCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFV--NSKNCGDKSVSQIIIDMTD--GGAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~vi--~~~~~~~~~~~~~i~~~~~--~g~d  212 (326)
                      .+.+|||+|+ |.+|..+++.+...|+ +|++++++.++.+.+ .++..-+.+  |..+  ..++.+.+.+...  +++|
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d--~~~v~~~~~~~~~~~~~iD  101 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLAD--LESVRAFAERFLDSGRRID  101 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC--HHHHHHHHHHHHhcCCCCC
Confidence            4679999987 8999999998888999 899999988776543 223211222  2222  1223333333322  3899


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      ++++++|.
T Consensus       102 ~li~nAg~  109 (315)
T PRK06196        102 ILINNAGV  109 (315)
T ss_pred             EEEECCCC
Confidence            99998873

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.44  E-value=0.014  Score=49.11  Aligned_cols=99  Identities=16%  Similarity=0.221  Sum_probs=62.8

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHh-
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM-  206 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~-  206 (326)
                      .+.....++.+||-.|+|. |..+..+++. |. +|++++.+++..+.+++    .+...+ ....   .++    .+. 
T Consensus        23 ~~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~---~d~----~~~~   91 (197)
T PRK11207         23 LEAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDNL-HTAV---VDL----NNLT   91 (197)
T ss_pred             HHhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEe---cCh----hhCC
Confidence            3444555678999999876 7777777775 77 99999999987776654    222211 1110   111    111 


Q ss_pred             cCCCccEEEEcCC----c----HHHHHHHHHHhhcCCcEEEEec
Q 020435          207 TDGGADYCFECVG----L----ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       207 ~~~g~d~v~d~~g----~----~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .++.+|+|+....    .    ...+..+.+.|+++ |.++.+.
T Consensus        92 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~~  134 (197)
T PRK11207         92 FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIVA  134 (197)
T ss_pred             cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence            1237999986533    1    24477888899998 9965544

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.018  Score=50.50  Aligned_cols=79  Identities=23%  Similarity=0.293  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-----c-CCc-EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----F-GVT-EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-----~-g~~-~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+.+     . +.. +.+  |..+  .++..+.+.+...
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   83 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLD--EADVAAFAAAVEA   83 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            4689999987 8999999999999999 89999998877654321     1 111 122  3222  1233333333322


Q ss_pred             --CCccEEEEcCCc
Q 020435          209 --GGADYCFECVGL  220 (326)
Q Consensus       209 --~g~d~v~d~~g~  220 (326)
                        +++|++++++|.
T Consensus        84 ~~g~id~li~~Ag~   97 (265)
T PRK07062         84 RFGGVDMLVNNAGQ   97 (265)
T ss_pred             hcCCCCEEEECCCC
Confidence              379999999874

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.42  E-value=0.019  Score=50.85  Aligned_cols=79  Identities=18%  Similarity=0.232  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g--~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      ++.++||+|+ +  +||.++++.+...|+ +|+.+.++++..+.+    ++.|....+  |..+  .++..+.+.+... 
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d--~~~v~~~~~~~~~~   82 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED--IASVDAVFEALEKK   82 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 4  899999999999999 899888765332222    234533332  2222  2223333333322 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +.+|++++++|.
T Consensus        83 ~g~iD~lVnnAG~   95 (271)
T PRK06505         83 WGKLDFVVHAIGF   95 (271)
T ss_pred             hCCCCEEEECCcc
Confidence             389999998873

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.42  E-value=0.019  Score=49.18  Aligned_cols=79  Identities=18%  Similarity=0.161  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH----HHhcCCcEE-EcCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~----~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.    ++..+...+ .|..+  .+++.+.+.+...  ++
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVD--PQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCC--HHHHHHHHHHHHHHhCC
Confidence            3689999987 9999999999988899 89999987765332    222333221 22222  1223333333222  27


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+++++.+.
T Consensus        83 ~d~vi~~ag~   92 (239)
T PRK12828         83 LDALVNIAGA   92 (239)
T ss_pred             cCEEEECCcc
Confidence            9999998763

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.42  E-value=0.025  Score=49.77  Aligned_cols=79  Identities=18%  Similarity=0.306  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-c----CCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~----g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+.+ +    +.+ ..+  |..+  ..+..+.+.+... 
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK--REDLERTVKELKNI   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHHHHhh
Confidence            4779999987 8999999999999999 89999998877654432 1    321 222  3222  2233333333321 


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|+++++.|.
T Consensus        84 g~iD~lv~nag~   95 (263)
T PRK08339         84 GEPDIFFFSTGG   95 (263)
T ss_pred             CCCcEEEECCCC
Confidence            379999998874

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.018  Score=50.16  Aligned_cols=80  Identities=21%  Similarity=0.205  Sum_probs=51.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC-cEEEcCCCCCCccHHHHHHHhcC--CCc
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      +.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+    .+. .+.+..+-.+.+++.+.+.+...  +++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            468999987 8999999999999999 99999998876554432    232 12332221011233333333321  379


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |+++++.|.
T Consensus        80 d~lI~~ag~   88 (252)
T PRK07677         80 DALINNAAG   88 (252)
T ss_pred             cEEEECCCC
Confidence            999998873

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.023  Score=49.15  Aligned_cols=79  Identities=22%  Similarity=0.283  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ ++++.. +.+  |..+  ..+..+.+.....  +++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGD--VAAQKALAQALAEAFGRL   81 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4679999987 9999999999999999 999999887765543 345532 222  2222  1222222222221  379


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |+++++++.
T Consensus        82 d~vi~~ag~   90 (249)
T PRK06500         82 DAVFINAGV   90 (249)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.071  Score=46.97  Aligned_cols=76  Identities=21%  Similarity=0.291  Sum_probs=48.8

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc--E--EEcCCCCCCccHHHHHHHhcC--CC
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT--E--FVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~--~--vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      +++|+|+ |++|..+++.+...|+ +|+.+++++++.+.+    +..+..  .  ..|..+  .+...+.+.+...  ++
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD--YDAVAAFAADIHAAHGS   78 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC--HHHHHHHHHHHHHhcCC
Confidence            6899987 9999999999988999 899999887765433    223332  1  133333  1222222222221  37


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+++++.|.
T Consensus        79 id~lv~~ag~   88 (272)
T PRK07832         79 MDVVMNIAGI   88 (272)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=96.39  E-value=0.017  Score=51.55  Aligned_cols=96  Identities=23%  Similarity=0.346  Sum_probs=59.1

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC-cEEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      ..+|++||=+|+|+ |.+++..+ .+|+++|++++.++...+.+++    -|. +.+.....   .+.       ..+.+
T Consensus       159 ~~~g~~vLDvG~GS-GILaiaA~-klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~---~~~-------~~~~~  226 (295)
T PF06325_consen  159 VKPGKRVLDVGCGS-GILAIAAA-KLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS---EDL-------VEGKF  226 (295)
T ss_dssp             SSTTSEEEEES-TT-SHHHHHHH-HTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT---SCT-------CCS-E
T ss_pred             ccCCCEEEEeCCcH-HHHHHHHH-HcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe---ccc-------ccccC
Confidence            56789999998654 44444333 3588899999999987766543    232 22211111   111       11489


Q ss_pred             cEEEEcCCcHHH---HHHHHHHhhcCCcEEEEeccCC
Q 020435          212 DYCFECVGLASL---VQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       212 d~v~d~~g~~~~---~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+|+-..-....   .+...+.++++ |.+++.|...
T Consensus       227 dlvvANI~~~vL~~l~~~~~~~l~~~-G~lIlSGIl~  262 (295)
T PF06325_consen  227 DLVVANILADVLLELAPDIASLLKPG-GYLILSGILE  262 (295)
T ss_dssp             EEEEEES-HHHHHHHHHHCHHHEEEE-EEEEEEEEEG
T ss_pred             CEEEECCCHHHHHHHHHHHHHhhCCC-CEEEEccccH
Confidence            999977766552   33456688998 9999998753

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.022  Score=49.56  Aligned_cols=79  Identities=19%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ++.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+.    ..+.+ ..+  |..+  .++..+.+.+...  
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD--EAYAKALVALAVERF   81 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            3679999987 8999999999988999 8999999887765442    23422 222  2222  1222333333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        82 ~~id~li~~ag~   93 (254)
T PRK07478         82 GGLDIAFNNAGT   93 (254)
T ss_pred             CCCCEEEECCCC
Confidence            279999998874

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.38  E-value=0.032  Score=50.35  Aligned_cols=91  Identities=25%  Similarity=0.416  Sum_probs=61.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      .+|.|+|+|.+|...++.++..|. .+|++.++++++.+.+++.|....+.      .+..+.+     ..+|+||.|+.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~------~~~~~~~-----~~aDvViiavp   75 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT------TSAAEAV-----KGADLVILCVP   75 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec------CCHHHHh-----cCCCEEEECCC
Confidence            589999999999999998888773 27999999999888888777522111      1111111     26899999998


Q ss_pred             cHHH---HHHHHHHhhcCCcEEEEecc
Q 020435          220 LASL---VQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       220 ~~~~---~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ....   +......++++ ..++.++.
T Consensus        76 ~~~~~~v~~~l~~~l~~~-~iv~dvgs  101 (307)
T PRK07502         76 VGASGAVAAEIAPHLKPG-AIVTDVGS  101 (307)
T ss_pred             HHHHHHHHHHHHhhCCCC-CEEEeCcc
Confidence            7542   22333455665 65655543

>PRK04148 hypothetical protein; Provisional

Probab=96.36  E-value=0.072  Score=41.57  Aligned_cols=89  Identities=19%  Similarity=0.257  Sum_probs=60.5

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      ...++.+++++|.| .|..+++.+...|. .|++++.+++..+.+++.+...+.+.--  +.++  .+-    +++|+|.
T Consensus        13 ~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf--~p~~--~~y----~~a~liy   82 (134)
T PRK04148         13 EKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLF--NPNL--EIY----KNAKLIY   82 (134)
T ss_pred             ccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCC--CCCH--HHH----hcCCEEE
Confidence            33456899999998 78755666667898 9999999999999998887644432111  0111  111    1799999


Q ss_pred             EcCCcHHHHHHHHHHhhcC
Q 020435          216 ECVGLASLVQEAYACCRKG  234 (326)
Q Consensus       216 d~~g~~~~~~~~~~~l~~~  234 (326)
                      .+-..++.....+++-++-
T Consensus        83 sirpp~el~~~~~~la~~~  101 (134)
T PRK04148         83 SIRPPRDLQPFILELAKKI  101 (134)
T ss_pred             EeCCCHHHHHHHHHHHHHc
Confidence            9999888444555554443

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.031  Score=47.59  Aligned_cols=77  Identities=19%  Similarity=0.237  Sum_probs=52.4

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+++|+|+ |.+|..+++.+...|+ +|+.+++++++.+.++..+.. ...|..+  ..++.+.+.+..++++|+++.+.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~~d~vi~~a   78 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVAD--PASVAGLAWKLDGEALDAAVYVA   78 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCC--HHHHHHHHHHhcCCCCCEEEECC
Confidence            47899987 9999999998888898 899999998887777666543 2223332  12222222233323799999887


Q ss_pred             Cc
Q 020435          219 GL  220 (326)
Q Consensus       219 g~  220 (326)
                      |.
T Consensus        79 g~   80 (222)
T PRK06953         79 GV   80 (222)
T ss_pred             Cc
Confidence            65

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.34  E-value=0.022  Score=51.71  Aligned_cols=80  Identities=18%  Similarity=0.183  Sum_probs=53.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-----cC-Cc-E--EEcCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FG-VT-E--FVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-----~g-~~-~--vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      .|.+++|+|+ +++|.++++.+...|+ +|+.+++++++.+.+.+     .+ .. +  ..|..+ ...+..+.+.+..+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~l~~~~~  129 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG-DIDEGVKRIKETIE  129 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC-CcHHHHHHHHHHhc
Confidence            4789999997 8999999988888899 89999999988765422     22 11 1  223322 01233444555555


Q ss_pred             C-CccEEEEcCCc
Q 020435          209 G-GADYCFECVGL  220 (326)
Q Consensus       209 ~-g~d~v~d~~g~  220 (326)
                      + .+|++++++|.
T Consensus       130 ~~didilVnnAG~  142 (320)
T PLN02780        130 GLDVGVLINNVGV  142 (320)
T ss_pred             CCCccEEEEecCc
Confidence            5 67799988763

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.027  Score=49.49  Aligned_cols=78  Identities=22%  Similarity=0.294  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+..    ...+.. +++  |..+  ..++.+.+.+...  
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~~   84 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD--YAAVEAAFAQIADEF   84 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5789999987 9999999999989999 899999887765433    222322 222  3222  2233333444322  


Q ss_pred             CCccEEEEcCC
Q 020435          209 GGADYCFECVG  219 (326)
Q Consensus       209 ~g~d~v~d~~g  219 (326)
                      +++|++|.+.+
T Consensus        85 ~~iD~vi~~ag   95 (264)
T PRK07576         85 GPIDVLVSGAA   95 (264)
T ss_pred             CCCCEEEECCC
Confidence            27999998875

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.29  E-value=0.036  Score=44.67  Aligned_cols=102  Identities=18%  Similarity=0.254  Sum_probs=63.7

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      .-.|.+++|.|-|.+|.-+++.++.+|+ +|++++.++-+.-++.--|.. +.        .+.+.+     ...|+++.
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~-v~--------~~~~a~-----~~adi~vt   84 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE-VM--------TLEEAL-----RDADIFVT   84 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E-EE---------HHHHT-----TT-SEEEE
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE-ec--------CHHHHH-----hhCCEEEE
Confidence            4478999999999999999999999999 999999998777666555653 22        222222     25899999


Q ss_pred             cCCcHHH-HHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHH
Q 020435          217 CVGLASL-VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL  258 (326)
Q Consensus       217 ~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~  258 (326)
                      +.|.... -...+..|+++ ..+...|.    ....++...+.
T Consensus        85 aTG~~~vi~~e~~~~mkdg-ail~n~Gh----~d~Eid~~~L~  122 (162)
T PF00670_consen   85 ATGNKDVITGEHFRQMKDG-AILANAGH----FDVEIDVDALE  122 (162)
T ss_dssp             -SSSSSSB-HHHHHHS-TT-EEEEESSS----STTSBTHHHHH
T ss_pred             CCCCccccCHHHHHHhcCC-eEEeccCc----CceeEeecccc
Confidence            9998663 35778889986 44444432    33455554433

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.29  E-value=0.09  Score=42.69  Aligned_cols=89  Identities=25%  Similarity=0.246  Sum_probs=60.1

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      .+|-++|.|.+|...++-+...|. +|++.++++++.+.+.+.|+. ..       .+..+.+.+     .|+||-|..+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~-~~-------~s~~e~~~~-----~dvvi~~v~~   67 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAE-VA-------DSPAEAAEQ-----ADVVILCVPD   67 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEE-EE-------SSHHHHHHH-----BSEEEE-SSS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhh-hh-------hhhhhHhhc-----ccceEeeccc
Confidence            378899999999999998888999 999999999999988887753 22       233333333     6999998888


Q ss_pred             HHHHHHHH------HHhhcCCcEEEEeccC
Q 020435          221 ASLVQEAY------ACCRKGWGKTIVLGVD  244 (326)
Q Consensus       221 ~~~~~~~~------~~l~~~~G~~v~~g~~  244 (326)
                      .......+      ..+.++ ..++.++..
T Consensus        68 ~~~v~~v~~~~~i~~~l~~g-~iiid~sT~   96 (163)
T PF03446_consen   68 DDAVEAVLFGENILAGLRPG-KIIIDMSTI   96 (163)
T ss_dssp             HHHHHHHHHCTTHGGGS-TT-EEEEE-SS-
T ss_pred             chhhhhhhhhhHHhhccccc-eEEEecCCc
Confidence            65455443      335565 666666543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.28  E-value=0.028  Score=49.16  Aligned_cols=78  Identities=21%  Similarity=0.253  Sum_probs=50.0

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHHhcC--CCccEE
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYC  214 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~--~g~d~v  214 (326)
                      ++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+.    +.+..+.+..+-.+.++..+.+.+...  +++|++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l   80 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL   80 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            6899987 8999999999988999 8999999887654432    223222332221011233333333322  389999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      +++.|.
T Consensus        81 i~naG~   86 (259)
T PRK08340         81 VWNAGN   86 (259)
T ss_pred             EECCCC
Confidence            998874

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.28  E-value=0.031  Score=48.34  Aligned_cols=80  Identities=21%  Similarity=0.267  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+    +..+.. +.+..+-....+..+.+.....  ++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ   82 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999987 9999999999998999 899999887765443    223432 2222211001233333333322  37


Q ss_pred             ccEEEEcCC
Q 020435          211 ADYCFECVG  219 (326)
Q Consensus       211 ~d~v~d~~g  219 (326)
                      +|.+|+++|
T Consensus        83 id~vi~~ag   91 (253)
T PRK08217         83 LNGLINNAG   91 (253)
T ss_pred             CCEEEECCC
Confidence            899999887

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.27  E-value=0.079  Score=47.96  Aligned_cols=94  Identities=11%  Similarity=0.097  Sum_probs=61.1

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEE-cCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      +|||+|+ |-+|..+++.+...|. +|.+++++.++...+...+++.+. |..+   .   +.+.+... ++|+||++.+
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d---~---~~l~~al~-g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSL---P---ETLPPSFK-GVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCC---H---HHHHHHHC-CCCEEEECCC
Confidence            7999997 9999999999988898 999999987766555555654332 2212   1   22333222 6899999876


Q ss_pred             cHH------------HHHHHHHHhhcCCc--EEEEeccC
Q 020435          220 LAS------------LVQEAYACCRKGWG--KTIVLGVD  244 (326)
Q Consensus       220 ~~~------------~~~~~~~~l~~~~G--~~v~~g~~  244 (326)
                      ...            ....+++.++.. |  ++|.++..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~aa~~~-gvkr~I~~Ss~  111 (317)
T CHL00194         74 SRPSDLYNAKQIDWDGKLALIEAAKAA-KIKRFIFFSIL  111 (317)
T ss_pred             CCCCCccchhhhhHHHHHHHHHHHHHc-CCCEEEEeccc
Confidence            321            123445555554 4  78877653

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=96.27  E-value=0.09  Score=46.79  Aligned_cols=138  Identities=22%  Similarity=0.274  Sum_probs=78.4

Q ss_pred             cccceEEecccceEEcCCCCCccccccccchhhhhhhhhhh-hcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEc
Q 020435           93 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  171 (326)
Q Consensus        93 ~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~-~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~  171 (326)
                      +|.+|..-....++++.+++.+-    ......|++. +.- ....++|.+||=.|+|+ |.+++. |..+|+.+|++++
T Consensus       120 sw~~~~~~~~~~~i~lDPGlAFG----TG~HpTT~lc-L~~Le~~~~~g~~vlDvGcGS-GILaIA-a~kLGA~~v~g~D  192 (300)
T COG2264         120 SWREYPEPSDELNIELDPGLAFG----TGTHPTTSLC-LEALEKLLKKGKTVLDVGCGS-GILAIA-AAKLGAKKVVGVD  192 (300)
T ss_pred             CCccCCCCCCceEEEEccccccC----CCCChhHHHH-HHHHHHhhcCCCEEEEecCCh-hHHHHH-HHHcCCceEEEec
Confidence            35444333245566666666432    2223333333 221 12356899999999765 665554 3456776899999


Q ss_pred             CChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHH---HHHHHHHHhhcCCcEEEEeccC
Q 020435          172 VISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS---LVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       172 ~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~---~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      .++-..+.+++    -++...+....   .+..   .....+.+|+|+..+=...   ..+.....++++ |++++.|..
T Consensus       193 iDp~AV~aa~eNa~~N~v~~~~~~~~---~~~~---~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpg-g~lIlSGIl  265 (300)
T COG2264         193 IDPQAVEAARENARLNGVELLVQAKG---FLLL---EVPENGPFDVIVANILAEVLVELAPDIKRLLKPG-GRLILSGIL  265 (300)
T ss_pred             CCHHHHHHHHHHHHHcCCchhhhccc---ccch---hhcccCcccEEEehhhHHHHHHHHHHHHHHcCCC-ceEEEEeeh
Confidence            98877666543    33332111111   1111   1112238999996554433   245778899998 999999865

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.26  E-value=0.044  Score=47.41  Aligned_cols=105  Identities=15%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHh
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ....+..++.+||-.|.|. |..++.+++.++ ..+|+.++.+++..+.+++    .|...-+....   .+..+.+.++
T Consensus        61 ~~l~~~~~~~~vLEiGt~~-G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~---gda~~~L~~l  136 (234)
T PLN02781         61 SMLVKIMNAKNTLEIGVFT-GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ---SDALSALDQL  136 (234)
T ss_pred             HHHHHHhCCCEEEEecCcc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---ccHHHHHHHH
Confidence            3445666788999998643 666666777653 3499999999988777654    45332222222   3344444443


Q ss_pred             c----CCCccEEE-EcCCc--HHHHHHHHHHhhcCCcEEEEe
Q 020435          207 T----DGGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       207 ~----~~g~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .    .+.||+|| |+.-.  ...+..+.+.++++ |.++.-
T Consensus       137 ~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~d  177 (234)
T PLN02781        137 LNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAFD  177 (234)
T ss_pred             HhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEEE
Confidence            2    23899998 54322  34477889999998 877654

>PRK06128 oxidoreductase; Provisional

Probab=96.26  E-value=0.07  Score=47.86  Aligned_cols=102  Identities=23%  Similarity=0.202  Sum_probs=61.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH--H----HHHHhcCCcE-EE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--F----EIGKRFGVTE-FV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~--~----~~~~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.+.++.+.  .    +.++..+.+. .+  |..+  ..+..+.+.+...
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  130 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD--EAFCRQLVERAVK  130 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHHHHH
Confidence            4689999987 9999999999988999 88887654321  1    2233344322 22  2222  1222333333222


Q ss_pred             --CCccEEEEcCCcH--------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          209 --GGADYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       209 --~g~d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                        +++|++|+++|..                          ...+.+...+.++ |+++.++..
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~iv~~sS~  193 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPG-ASIINTGSI  193 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcC-CEEEEECCc
Confidence              3799999988731                          0223344455676 898887653

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.26  E-value=0.051  Score=45.87  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ...+|+|.|+|++|..+++.+...|.++++.++.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46799999999999999999999998889999866

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.25  E-value=0.11  Score=43.84  Aligned_cols=81  Identities=27%  Similarity=0.354  Sum_probs=56.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .|.+|+|.|.|.+|..+++.+...|+ +|++.++++++.+.+.+ +++. .++.++         +   ....+|+++-|
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~---------l---~~~~~Dv~vp~   92 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPEE---------I---YSVDADVFAPC   92 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcchh---------h---ccccCCEEEec
Confidence            57899999999999999999999999 99999998887776654 4653 333221         1   11158888866


Q ss_pred             CCcHHHHHHHHHHhhc
Q 020435          218 VGLASLVQEAYACCRK  233 (326)
Q Consensus       218 ~g~~~~~~~~~~~l~~  233 (326)
                      ......-...+..|+.
T Consensus        93 A~~~~I~~~~~~~l~~  108 (200)
T cd01075          93 ALGGVINDDTIPQLKA  108 (200)
T ss_pred             ccccccCHHHHHHcCC
Confidence            5544434455566654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.25  E-value=0.028  Score=49.23  Aligned_cols=80  Identities=15%  Similarity=0.238  Sum_probs=49.1

Q ss_pred             CCCEEEEEccC---HHHHHHHHHHHHcCCCEEEEEcCChhHH---HHH-HhcCCcEEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGLG---SIGLAVAEGARLCGATRIIGVDVISEKF---EIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Gag---~~G~~a~~la~~~g~~~V~~~~~~~~~~---~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      ++.++||+|++   +||.++++.+...|+ +|+.++++++..   +.+ ++++....+.-+-.+.++..+.+.+...  +
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence            47899999863   899999999988999 899988875432   222 2334323332221012233333333322  3


Q ss_pred             CccEEEEcCC
Q 020435          210 GADYCFECVG  219 (326)
Q Consensus       210 g~d~v~d~~g  219 (326)
                      .+|++++++|
T Consensus        88 ~ld~lv~nAg   97 (258)
T PRK07533         88 RLDFLLHSIA   97 (258)
T ss_pred             CCCEEEEcCc
Confidence            7999998886

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.24  E-value=0.052  Score=50.63  Aligned_cols=91  Identities=23%  Similarity=0.308  Sum_probs=59.5

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCC-EEEEEcCChhHHHHHHh--cC--Cc-EEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          143 VVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR--FG--VT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~-~V~~~~~~~~~~~~~~~--~g--~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      |+|+|+|.+|..+++.+...+-. +|++.+++.++.+.+.+  .+  .. ..+|..+      .+.+.++.. +.|+|++
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~l~~~~~-~~dvVin   73 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND------PESLAELLR-GCDVVIN   73 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT------HHHHHHHHT-TSSEEEE
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC------HHHHHHHHh-cCCEEEE
Confidence            78999999999999999876543 89999999999877643  22  22 2233332      222444433 5799999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      |++.......+-.++..+ -.++..
T Consensus        74 ~~gp~~~~~v~~~~i~~g-~~yvD~   97 (386)
T PF03435_consen   74 CAGPFFGEPVARACIEAG-VHYVDT   97 (386)
T ss_dssp             -SSGGGHHHHHHHHHHHT--EEEES
T ss_pred             CCccchhHHHHHHHHHhC-CCeecc
Confidence            999776466666778887 788874

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK05717 oxidoreductase; Validated

Probab=96.23  E-value=0.03  Score=48.77  Aligned_cols=79  Identities=19%  Similarity=0.237  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+ ++++.. +.+  |..+  ..+..+.+.+...  +++
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVAD--EAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            3678999987 9999999999988898 999998877655443 344422 222  2222  1223233333322  269


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++|.+.+.
T Consensus        86 d~li~~ag~   94 (255)
T PRK05717         86 DALVCNAAI   94 (255)
T ss_pred             CEEEECCCc
Confidence            999998874

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.23  E-value=0.1  Score=42.07  Aligned_cols=80  Identities=26%  Similarity=0.283  Sum_probs=49.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC--hhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhc--CCC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI--SEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMT--DGG  210 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~--~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~--~~g  210 (326)
                      +++||+|+ +++|..+++.+...|..+|+.+.++  .++.+.+    +..+.. .++..+-...++..+.+.+..  .+.
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            37899987 9999999988887776588888888  4443332    334432 222222101233333444443  238


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++|.|.|.
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            9999999886

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06484 short chain dehydrogenase; Validated

Probab=96.23  E-value=0.089  Score=51.07  Aligned_cols=102  Identities=23%  Similarity=0.261  Sum_probs=67.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcE-E--EcCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~-v--i~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ +++|..+++.+...|+ +|+.+++++++.+.+.+ ++... .  .|..+  .++..+.+.+...  +.+
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITD--EAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            5789999987 8999999999999999 99999998887766543 44322 1  23222  1233333333322  379


Q ss_pred             cEEEEcCCcH--------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          212 DYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       212 d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      |++|+++|..                          ...+.++..++.+ |+++.++..
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~  402 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSI  402 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECch
Confidence            9999988741                          0133444555666 899988764

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.037  Score=47.68  Aligned_cols=79  Identities=20%  Similarity=0.212  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ...++||+|+ |.+|..+++.+...|. +|+++++++++.+.+.+    .+.. .++  |..+  .+++.+.+.+...  
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSN--PEAIAPGIAELLEQF   81 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4578999987 9999999999998999 99999998876654422    2221 122  2222  2233333333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|+++++.|.
T Consensus        82 ~~id~lv~~ag~   93 (241)
T PRK07454         82 GCPDVLINNAGM   93 (241)
T ss_pred             CCCCEEEECCCc
Confidence            279999998874

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.21  E-value=0.032  Score=48.60  Aligned_cols=79  Identities=24%  Similarity=0.341  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+    +..|.. ..+  |..+  .+++.+.+.+...  
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   85 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD--HDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            4789999987 9999999999888899 899999887765432    223322 222  2222  2233333333221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|++.+.
T Consensus        86 ~~~d~li~~ag~   97 (255)
T PRK07523         86 GPIDILVNNAGM   97 (255)
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>PRK01581 speE spermidine synthase; Validated

Probab=96.21  E-value=0.1  Score=47.73  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=65.6

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC-c----EEEcCCCC--CCccHHHHHHHhcCC
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-T----EFVNSKNC--GDKSVSQIIIDMTDG  209 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~-~----~vi~~~~~--~~~~~~~~i~~~~~~  209 (326)
                      .....+|||+|+|. |.++..+++..+..+|++++.+++-.+.++++.. .    ..++....  -..+..+.+.+ ..+
T Consensus       148 h~~PkrVLIIGgGd-G~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~~  225 (374)
T PRK01581        148 VIDPKRVLILGGGD-GLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PSS  225 (374)
T ss_pred             CCCCCEEEEECCCH-HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-cCC
Confidence            34567999999764 6677777887665599999999998888885210 0    00000000  00223333433 334


Q ss_pred             CccEEE-EcCCc----------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          210 GADYCF-ECVGL----------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       210 g~d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+|+|| |....          ..++..+.+.|+++ |.++....
T Consensus       226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~  269 (374)
T PRK01581        226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQSN  269 (374)
T ss_pred             CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence            899998 54321          33578889999998 99887643

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.20  E-value=0.061  Score=40.03  Aligned_cols=88  Identities=22%  Similarity=0.310  Sum_probs=58.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+.+|||+|+|.+|..-++.+...|+ +|++++...   +..+  +.-... .     ..+.    +.. .++|+|+-+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~--~~i~~~-~-----~~~~----~~l-~~~~lV~~at   68 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSE--GLIQLI-R-----REFE----EDL-DGADLVFAAT   68 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHH--TSCEEE-E-----SS-G----GGC-TTESEEEE-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhh--hHHHHH-h-----hhHH----HHH-hhheEEEecC
Confidence            47899999999999999999999999 999998765   2222  211111 1     1221    011 2799999999


Q ss_pred             CcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          219 GLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       219 g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +.+..-+......+.. |.++.....
T Consensus        69 ~d~~~n~~i~~~a~~~-~i~vn~~D~   93 (103)
T PF13241_consen   69 DDPELNEAIYADARAR-GILVNVVDD   93 (103)
T ss_dssp             S-HHHHHHHHHHHHHT-TSEEEETT-
T ss_pred             CCHHHHHHHHHHHhhC-CEEEEECCC
Confidence            9988666777777776 888887653

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.19  E-value=0.039  Score=48.30  Aligned_cols=81  Identities=23%  Similarity=0.320  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-c--CC-cEEEcCCCCCCccHHHHHHHhc-CCCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F--GV-TEFVNSKNCGDKSVSQIIIDMT-DGGAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~--g~-~~vi~~~~~~~~~~~~~i~~~~-~~g~d  212 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.. +  +. .+.+..+-.+..+..+.+.... .+++|
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id   82 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN   82 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            4678999987 9999999999988999 89999998877665432 1  21 1222211100122222222221 23899


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      .++.++|.
T Consensus        83 ~lv~~ag~   90 (263)
T PRK09072         83 VLINNAGV   90 (263)
T ss_pred             EEEECCCC
Confidence            99998875

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.19  E-value=0.033  Score=49.15  Aligned_cols=78  Identities=21%  Similarity=0.321  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-Hh---cC--Cc-EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KR---FG--VT-EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~---~g--~~-~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.. .+   .+  .. .++  |..+  .+++.+.+.+...
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD--EDQVARAVDAATA   82 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC--HHHHHHHHHHHHH
Confidence            3679999997 9999999999999999 899999887665432 22   11  11 222  2222  1233333333322


Q ss_pred             --CCccEEEEcCC
Q 020435          209 --GGADYCFECVG  219 (326)
Q Consensus       209 --~g~d~v~d~~g  219 (326)
                        +++|++|.+.+
T Consensus        83 ~~~~~d~li~~ag   95 (276)
T PRK05875         83 WHGRLHGVVHCAG   95 (276)
T ss_pred             HcCCCCEEEECCC
Confidence              27999999887

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.19  E-value=0.035  Score=48.47  Aligned_cols=79  Identities=20%  Similarity=0.384  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+.    ..+.. +.+  |..+  .+++.+.+.++..  
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d--~~~i~~~~~~~~~~~   87 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVAD--EADIERLAEETLERF   87 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4689999987 9999999999988999 9999999887765443    22322 222  2222  2233333333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|.++.+.+.
T Consensus        88 ~~id~vi~~ag~   99 (259)
T PRK08213         88 GHVDILVNNAGA   99 (259)
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.032  Score=48.47  Aligned_cols=81  Identities=25%  Similarity=0.307  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+    ++.+.. +.+..+-.+..++.+.+.+...  ++
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4689999987 9999999998888898 899999987765433    233422 2222221011223332332221  37


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+++++.|.
T Consensus        85 id~li~~ag~   94 (253)
T PRK06172         85 LDYAFNNAGI   94 (253)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.033  Score=48.67  Aligned_cols=79  Identities=22%  Similarity=0.271  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc-----CCc-EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVT-EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~-----g~~-~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+. ++     +.. .++  |..+  .+++.+.+.+...
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTD--AASVAAAVAAAEE   82 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4679999987 8999999999999999 8999999877665432 22     221 122  2222  2233333333322


Q ss_pred             --CCccEEEEcCCc
Q 020435          209 --GGADYCFECVGL  220 (326)
Q Consensus       209 --~g~d~v~d~~g~  220 (326)
                        +++|++++++|.
T Consensus        83 ~~g~id~li~~ag~   96 (260)
T PRK07063         83 AFGPLDVLVNNAGI   96 (260)
T ss_pred             HhCCCcEEEECCCc
Confidence              379999998873

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.17  E-value=0.033  Score=48.47  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EE--EcCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF--VNSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~v--i~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+.+    .+.. +.  .|..+  .+++...+.+...  
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD--EDQCANLVALALERF   80 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC--HHHHHHHHHHHHHHc
Confidence            4679999987 9999999999999999 99999998876554422    2321 12  22222  2233333333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|.+.+.
T Consensus        81 g~~d~vi~~ag~   92 (258)
T PRK07890         81 GRVDALVNNAFR   92 (258)
T ss_pred             CCccEEEECCcc
Confidence            379999998864

>PLN02476 O-methyltransferase

Probab=96.16  E-value=0.05  Score=48.09  Aligned_cols=105  Identities=16%  Similarity=0.197  Sum_probs=68.2

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHHhc
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ...+..+..+||-+|.+. |..++.+|+.++ -.+|+.++.+++..+.++    +.|..+-+....   .+..+.+.++.
T Consensus       112 ~L~~~~~ak~VLEIGT~t-GySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~---GdA~e~L~~l~  187 (278)
T PLN02476        112 MLVQILGAERCIEVGVYT-GYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH---GLAAESLKSMI  187 (278)
T ss_pred             HHHHhcCCCeEEEecCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHH
Confidence            345566788999998643 666667777664 227999999998877764    356543232222   34445554432


Q ss_pred             ----CCCccEEE-EcCCc--HHHHHHHHHHhhcCCcEEEEec
Q 020435          208 ----DGGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ----~~g~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                          .+.||.|| |+.-.  ...+..+++.|+++ |.++.=.
T Consensus       188 ~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~DN  228 (278)
T PLN02476        188 QNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVMDN  228 (278)
T ss_pred             hcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEec
Confidence                23899998 65543  33477889999997 8876543

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.037  Score=48.38  Aligned_cols=79  Identities=20%  Similarity=0.254  Sum_probs=50.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhcC--CCcc
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GGAD  212 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g~d  212 (326)
                      .++||+|+ |.+|..+++.+...|. +|+++++++++.+.+    +..+.. +++..+-.+..++.+.+.+...  +++|
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            57999987 9999999999989998 999999987665433    223332 2221111012233333333322  2799


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      +++.|.+.
T Consensus        81 ~vi~~ag~   88 (263)
T PRK06181         81 ILVNNAGI   88 (263)
T ss_pred             EEEECCCc
Confidence            99999874

>PRK08643 acetoin reductase; Validated

Probab=96.16  E-value=0.033  Score=48.48  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=50.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcE-EE--cCCCCCCccHHHHHHHhcC--C
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-FV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+.    +.+... .+  |..+  .+.+.+.+.+...  +
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD--RDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            568999987 9999999999988999 9999998877654432    223221 22  2222  1223333333321  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|+++.+.|.
T Consensus        79 ~id~vi~~ag~   89 (256)
T PRK08643         79 DLNVVVNNAGV   89 (256)
T ss_pred             CCCEEEECCCC
Confidence            79999998864

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.035  Score=48.09  Aligned_cols=81  Identities=21%  Similarity=0.192  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-c--CCc-EEEcCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F--GVT-EFVNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~--g~~-~vi~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+.++.++.+...+ +  +.. ..+..+-.+.....+.+.+...  +++
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   82 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL   82 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            3679999987 9999999998888898 89999988776544322 2  321 2222121011223333333322  389


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |+++.+.+.
T Consensus        83 d~vi~~ag~   91 (252)
T PRK06138         83 DVLVNNAGF   91 (252)
T ss_pred             CEEEECCCC
Confidence            999998884

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.14  E-value=0.036  Score=47.95  Aligned_cols=80  Identities=21%  Similarity=0.187  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCC-cEEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV-TEFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~-~~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+.    ..+. .+++..+-...+.+.+.+.++..  ++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            3678999987 9999999999988999 8999998877655432    2232 22332222011223333333222  27


Q ss_pred             ccEEEEcCC
Q 020435          211 ADYCFECVG  219 (326)
Q Consensus       211 ~d~v~d~~g  219 (326)
                      +|++|.+.+
T Consensus        81 ~d~vi~~ag   89 (250)
T TIGR03206        81 VDVLVNNAG   89 (250)
T ss_pred             CCEEEECCC
Confidence            999999887

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.14  E-value=0.039  Score=48.08  Aligned_cols=80  Identities=21%  Similarity=0.204  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcE-EEcCCCCCCcc-HHHHHHHhc--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FVNSKNCGDKS-VSQIIIDMT--DG  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~-vi~~~~~~~~~-~~~~i~~~~--~~  209 (326)
                      ++.++||+|+ |.+|..+++.+...|. +|+++++++++.+.+    ++.+.+. .+..+- .+.+ +.+.+.+..  .+
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~~~~~~   83 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDV-TNEDAVNAGIDKVAERFG   83 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCC-CCHHHHHHHHHHHHHHcC
Confidence            3679999997 9999999999989999 899999988665433    3344332 222111 1122 222222221  13


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|+++.|.+.
T Consensus        84 ~~d~vi~~ag~   94 (262)
T PRK13394         84 SVDILVSNAGI   94 (262)
T ss_pred             CCCEEEECCcc
Confidence            79999998874

>PRK06194 hypothetical protein; Provisional

Probab=96.12  E-value=0.038  Score=49.07  Aligned_cols=80  Identities=21%  Similarity=0.264  Sum_probs=50.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-h---cCCc-EEEcCCCCCCccHHHHHHHhc--CCCc
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---FGVT-EFVNSKNCGDKSVSQIIIDMT--DGGA  211 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~---~g~~-~vi~~~~~~~~~~~~~i~~~~--~~g~  211 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|++++++.++.+... +   .+.. .++..+-.+.+++.+.+....  .+++
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            578999987 9999999999888999 8999998876654432 2   2332 122222100122322233221  1378


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++|+++|.
T Consensus        85 d~vi~~Ag~   93 (287)
T PRK06194         85 HLLFNNAGV   93 (287)
T ss_pred             CEEEECCCC
Confidence            999998875

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.11  E-value=0.018  Score=50.62  Aligned_cols=76  Identities=22%  Similarity=0.288  Sum_probs=50.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcE-EEcCCCCCCccHHHHHHHhcC--CCccEEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYCF  215 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~g~d~v~  215 (326)
                      +.+++|+|+ |.+|..+++.+...|+ +|++++++.++.+...  +... ..|..+  .+++.+.+.+...  +.+|++|
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~D~~d--~~~~~~~~~~~~~~~g~~d~li   78 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPIP--GVELLELDVTD--DASVQAAVDEVIARAGRIDVLV   78 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccccC--CCeeEEeecCC--HHHHHHHHHHHHHhCCCCCEEE
Confidence            568999987 9999999999888899 8999998866554321  2221 123222  2334444443322  3799999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      ++.|.
T Consensus        79 ~~ag~   83 (270)
T PRK06179         79 NNAGV   83 (270)
T ss_pred             ECCCC
Confidence            99884

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.11  E-value=0.041  Score=47.66  Aligned_cols=79  Identities=25%  Similarity=0.286  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |.+|..+++.+...|. +|+.+++++++.+.+.    +.+.. +.+  |..+  ...+.+.+.+...  
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   81 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD--PDSAKAMADATVSAF   81 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence            4678999987 9999999998888898 9999999876654332    22211 222  2222  1222222222221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|.++|.
T Consensus        82 ~~id~vi~~ag~   93 (250)
T PRK07774         82 GGIDYLVNNAAI   93 (250)
T ss_pred             CCCCEEEECCCC
Confidence            279999998883

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.09  E-value=0.039  Score=47.90  Aligned_cols=78  Identities=17%  Similarity=0.195  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+.+    .+.. +.+  |..+  ..+..+.+.+...  
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   83 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE--MEQIDALFAHIRERH   83 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            3578999987 9999999999999999 99999998776554322    2321 222  2222  1223333333322  


Q ss_pred             CCccEEEEcCC
Q 020435          209 GGADYCFECVG  219 (326)
Q Consensus       209 ~g~d~v~d~~g  219 (326)
                      +.+|+++++.+
T Consensus        84 ~~id~li~~ag   94 (252)
T PRK07035         84 GRLDILVNNAA   94 (252)
T ss_pred             CCCCEEEECCC
Confidence            26999998887

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.09  E-value=0.037  Score=48.53  Aligned_cols=78  Identities=24%  Similarity=0.272  Sum_probs=48.0

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcEEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g--~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ +  ++|.++++.+...|+ +|+.+.++++..+.++    +.+....+  |..+  .++..+.+.+... 
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~--~~~v~~~~~~~~~~   83 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTN--PKSISNLFDDIKEK   83 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCC--HHHHHHHHHHHHHH
Confidence            4678999987 4  799999988888899 8988887643222222    23433322  3322  2233333333322 


Q ss_pred             -CCccEEEEcCC
Q 020435          209 -GGADYCFECVG  219 (326)
Q Consensus       209 -~g~d~v~d~~g  219 (326)
                       +.+|+++++++
T Consensus        84 ~g~iDilVnnag   95 (260)
T PRK06603         84 WGSFDFLLHGMA   95 (260)
T ss_pred             cCCccEEEEccc
Confidence             37999998876

>PRK04457 spermidine synthase; Provisional

Probab=96.09  E-value=0.081  Score=46.59  Aligned_cols=95  Identities=13%  Similarity=0.148  Sum_probs=65.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CC----c--EEEcCCCCCCccHHHHHHHhcCCC
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV----T--EFVNSKNCGDKSVSQIIIDMTDGG  210 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~----~--~vi~~~~~~~~~~~~~i~~~~~~g  210 (326)
                      .++.+||++|.|+ |.++..+++..+..++++++.+++-.+.+++. +.    +  +++.      .+..+.+.+. .+.
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~------~Da~~~l~~~-~~~  136 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE------ADGAEYIAVH-RHS  136 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE------CCHHHHHHhC-CCC
Confidence            4567899999876 77777888776433899999999988888763 21    1  2232      2333444332 348


Q ss_pred             ccEEE-EcCCc---------HHHHHHHHHHhhcCCcEEEEe
Q 020435          211 ADYCF-ECVGL---------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       211 ~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +|+|+ |....         ...++.+.+.|+++ |.++..
T Consensus       137 yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvin  176 (262)
T PRK04457        137 TDVILVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVVN  176 (262)
T ss_pred             CCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEEE
Confidence            99997 65332         46688999999998 999874

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.04  Score=48.13  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=51.9

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cC-C-cEE--EcCCCCCCccHHHHHHHhc---CCCc
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG-V-TEF--VNSKNCGDKSVSQIIIDMT---DGGA  211 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g-~-~~v--i~~~~~~~~~~~~~i~~~~---~~g~  211 (326)
                      .++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.. ++ . -++  .|..+  ..++.+.+....   .+++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTD--RAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            47999987 9999999998888999 99999999887766543 22 1 122  23332  122333333321   3489


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |+++.++|.
T Consensus        79 d~vi~~ag~   87 (260)
T PRK08267         79 DVLFNNAGI   87 (260)
T ss_pred             CEEEECCCC
Confidence            999998885

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.043  Score=49.65  Aligned_cols=79  Identities=18%  Similarity=0.170  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc-----CCc-EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVT-EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~-----g~~-~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.+++|+|+ +++|.++++.+...|+ +|+.++++.++.+.+. ++     +.. +++  |..+  .++..+.+.++..
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d--~~sv~~~~~~~~~   89 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSS--LASVAALGEQLRA   89 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCC--HHHHHHHHHHHHH
Confidence            3679999997 8999999999888999 9999999887655432 11     111 122  3222  1222222333222


Q ss_pred             --CCccEEEEcCCc
Q 020435          209 --GGADYCFECVGL  220 (326)
Q Consensus       209 --~g~d~v~d~~g~  220 (326)
                        +++|++++++|.
T Consensus        90 ~~~~iD~li~nAG~  103 (313)
T PRK05854         90 EGRPIHLLINNAGV  103 (313)
T ss_pred             hCCCccEEEECCcc
Confidence              279999988774

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.07  E-value=0.059  Score=48.04  Aligned_cols=42  Identities=29%  Similarity=0.243  Sum_probs=37.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  180 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~  180 (326)
                      .+.+|+|+|+|++|.+++..+...|+.+|++++++.++.+.+
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~l  167 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAAL  167 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            467999999999999999999999987899999998887654

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.06  E-value=0.045  Score=47.06  Aligned_cols=78  Identities=23%  Similarity=0.308  Sum_probs=51.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcE-E--EcCCCCCCccHHHHHHHhcC--C
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      +.+|||+|+ |.+|..+++.+...|. +|+++.+++++.+.+    +..+... .  .|..+  ...+.+.+.+...  +
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   81 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD--EAAVRALIEAAVEAFG   81 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHhC
Confidence            468999997 9999999999988899 899999988775443    2334322 2  22222  1223333333321  2


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      .+|.++.+++.
T Consensus        82 ~id~vi~~ag~   92 (246)
T PRK05653         82 ALDILVNNAGI   92 (246)
T ss_pred             CCCEEEECCCc
Confidence            78999998864

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.06  E-value=0.058  Score=46.11  Aligned_cols=96  Identities=20%  Similarity=0.262  Sum_probs=63.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcE--EEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      -+|.+||=+|+|+ |.++.-+|+ .|+ .|++++.+++..+.++.-....  -+++..    ...+.+.+. ++.||+|+
T Consensus        58 l~g~~vLDvGCGg-G~Lse~mAr-~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~----~~~edl~~~-~~~FDvV~  129 (243)
T COG2227          58 LPGLRVLDVGCGG-GILSEPLAR-LGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQ----ATVEDLASA-GGQFDVVT  129 (243)
T ss_pred             CCCCeEEEecCCc-cHhhHHHHH-CCC-eeEEecCChHHHHHHHHhhhhccccccchh----hhHHHHHhc-CCCccEEE
Confidence            4788999999865 555555554 568 9999999999998887422111  144554    233333332 14899997


Q ss_pred             E-----cCCcH-HHHHHHHHHhhcCCcEEEEec
Q 020435          216 E-----CVGLA-SLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       216 d-----~~g~~-~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +     -+..+ .++..+.+.++|+ |.++..-
T Consensus       130 cmEVlEHv~dp~~~~~~c~~lvkP~-G~lf~ST  161 (243)
T COG2227         130 CMEVLEHVPDPESFLRACAKLVKPG-GILFLST  161 (243)
T ss_pred             EhhHHHccCCHHHHHHHHHHHcCCC-cEEEEec
Confidence            4     34443 3577899999998 8887653

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.06  E-value=0.098  Score=44.98  Aligned_cols=92  Identities=23%  Similarity=0.237  Sum_probs=60.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCC--EEEEEcCC----hhH--------HHHHHhcCCcEEEcCCCCCCccHHHHH
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI----SEK--------FEIGKRFGVTEFVNSKNCGDKSVSQII  203 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~--~V~~~~~~----~~~--------~~~~~~~g~~~vi~~~~~~~~~~~~~i  203 (326)
                      -.+.+|+|+|+|+.|..++..+...|++  +++.++++    .++        .++++.++...    .+   .++.+.+
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~----~~---~~l~~~l   95 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK----TG---GTLKEAL   95 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc----cc---CCHHHHH
Confidence            3578999999999999999999889997  79999988    343        22334443211    11   2333433


Q ss_pred             HHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          204 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .     ++|++|++.+........++.+.++ ..++.+.
T Consensus        96 ~-----~~dvlIgaT~~G~~~~~~l~~m~~~-~ivf~ls  128 (226)
T cd05311          96 K-----GADVFIGVSRPGVVKKEMIKKMAKD-PIVFALA  128 (226)
T ss_pred             h-----cCCEEEeCCCCCCCCHHHHHhhCCC-CEEEEeC
Confidence            2     4899999997433234666777776 6555443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK09186 flagellin modification protein A; Provisional

Probab=96.04  E-value=0.042  Score=47.78  Aligned_cols=78  Identities=21%  Similarity=0.358  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-Hhc----CCc--EE--EcCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF----GVT--EF--VNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~----g~~--~v--i~~~~~~~~~~~~~i~~~~~  208 (326)
                      ++.++||+|+ |.+|..++..+...|+ +|+.+.+++++.+.+ .++    +..  .+  .|..+  .+++.+.+.+...
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~   79 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD--QESLEEFLSKSAE   79 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC--HHHHHHHHHHHHH
Confidence            4689999987 8999999999999999 899999888776543 222    221  11  23322  2333333443322


Q ss_pred             --CCccEEEEcCC
Q 020435          209 --GGADYCFECVG  219 (326)
Q Consensus       209 --~g~d~v~d~~g  219 (326)
                        +++|+++++.+
T Consensus        80 ~~~~id~vi~~A~   92 (256)
T PRK09186         80 KYGKIDGAVNCAY   92 (256)
T ss_pred             HcCCccEEEECCc
Confidence              37999999875

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.04  E-value=0.051  Score=46.71  Aligned_cols=79  Identities=15%  Similarity=0.122  Sum_probs=51.0

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHH-HHHHhcCCcEEEcCCCCCCccHHHHHHHhcC--CCccEEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF-EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYCF  215 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~--~g~d~v~  215 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|+.++++++.. +.++..++. .+..+-.+.++..+.+.+...  +++|+++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~id~lv   79 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQ-CIQADFSTNAGIMAFIDELKQHTDGLRAII   79 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCE-EEEcCCCCHHHHHHHHHHHHhhCCCccEEE
Confidence            458999987 8999999999988999 999999876543 334445542 222211012333333333332  2699999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      ++.|.
T Consensus        80 ~~ag~   84 (236)
T PRK06483         80 HNASD   84 (236)
T ss_pred             ECCcc
Confidence            98874

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.04  E-value=0.041  Score=48.32  Aligned_cols=81  Identities=21%  Similarity=0.335  Sum_probs=48.6

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      ++.++||+|+   +++|.++++.+...|+ +|+.+.+.+...+.+++    .+....+..+-.+.++..+.+.+...  +
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4679999984   5899999999988999 89888765433333322    34222222111012333333333322  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus        84 ~iD~lVnnAG~   94 (261)
T PRK08690         84 GLDGLVHSIGF   94 (261)
T ss_pred             CCcEEEECCcc
Confidence            89999998864

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.04  E-value=0.04  Score=48.06  Aligned_cols=79  Identities=19%  Similarity=0.203  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh---cCCc-EEE--cCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVT-EFV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~---~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+...+   .+.. +.+  |..+  .+++.+.+.+...  +
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD--DAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhcC
Confidence            3679999987 8999999999988999 89999988876643332   3322 222  2222  1223333333322  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++|.++|.
T Consensus        83 ~id~vi~~ag~   93 (258)
T PRK08628         83 RIDGLVNNAGV   93 (258)
T ss_pred             CCCEEEECCcc
Confidence            79999999883

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.051  Score=47.04  Aligned_cols=77  Identities=18%  Similarity=0.303  Sum_probs=50.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----c--CCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F--GVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~--g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      +.++||+|+ |.+|..+++.+...|. +|+.+++++++.+.+..    .  +.. +++  |..+  .+++.+.+.+... 
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   78 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVND--HDQVFEVFAEFRDE   78 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            468999987 9999999988888898 99999998877655432    1  211 222  3222  2233333443322 


Q ss_pred             -CCccEEEEcCC
Q 020435          209 -GGADYCFECVG  219 (326)
Q Consensus       209 -~g~d~v~d~~g  219 (326)
                       +++|++|.+.|
T Consensus        79 ~~~id~vi~~ag   90 (248)
T PRK08251         79 LGGLDRVIVNAG   90 (248)
T ss_pred             cCCCCEEEECCC
Confidence             37999999886

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.04  Score=48.09  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH----HHHhcCCcE---EEcCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFGVTE---FVNSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~----~~~~~g~~~---vi~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.+++|+|+ |.+|..+++.+...|+.+|+++++++++.+    .++..+...   ..|..+  .+.+.+.+.....  
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD--VEDCRRVVAAADEAF   82 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4678999987 899999999999999933999998876554    233344322   123322  1223333332211  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|++.+.
T Consensus        83 g~id~li~~ag~   94 (260)
T PRK06198         83 GRLDALVNAAGL   94 (260)
T ss_pred             CCCCEEEECCCc
Confidence            379999999874

>PRK09242 tropinone reductase; Provisional

Probab=96.02  E-value=0.049  Score=47.48  Aligned_cols=79  Identities=22%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----c--CCc-EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F--GVT-EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~--g~~-~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+.+    .  +.+ ..+  |..+  .++..+.+.+...
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   84 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSD--DEDRRAILDWVED   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4789999987 8999999999999999 89999998877654321    1  221 122  2222  1223333333221


Q ss_pred             --CCccEEEEcCCc
Q 020435          209 --GGADYCFECVGL  220 (326)
Q Consensus       209 --~g~d~v~d~~g~  220 (326)
                        +++|+++.+.|.
T Consensus        85 ~~g~id~li~~ag~   98 (257)
T PRK09242         85 HWDGLHILVNNAGG   98 (257)
T ss_pred             HcCCCCEEEECCCC
Confidence              379999999984

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.049  Score=47.54  Aligned_cols=78  Identities=18%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCC--c-EEE--cCCCCCCccHHHHHHHhcC--CC
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV--T-EFV--NSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~--~-~vi--~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      +.+|||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+.+ +..  + +.+  |..+  .+++.+.+.+...  +.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRD--ADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC--HHHHHHHHHHHHHhCCC
Confidence            468999987 9999999999988899 99999998877665432 221  1 122  2222  1233333333322  26


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus        79 id~lv~~ag~   88 (257)
T PRK07024         79 PDVVIANAGI   88 (257)
T ss_pred             CCEEEECCCc
Confidence            8999998773

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.01  E-value=0.055  Score=47.06  Aligned_cols=81  Identities=25%  Similarity=0.377  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+    +..+.. ..+..+-...+++.+.+.++..  ++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   86 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP   86 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            4678999987 8999999999988999 999999887765433    222322 2222221012233333333222  37


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+++.+.|.
T Consensus        87 id~vi~~ag~   96 (254)
T PRK08085         87 IDVLINNAGI   96 (254)
T ss_pred             CCEEEECCCc
Confidence            9999998874

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.045  Score=48.32  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=51.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCc-EE--EcCCCCCCccHHHHHHHhcC--CCccE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      .++||+|+ |.+|..+++.+...|. +|+++.+++++.+.+++ .+.. .+  .|..+  .+.+.+.+.+...  +++|+
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   79 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTD--SAAVRAVVDRAFAALGRIDV   79 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            57999987 9999999998888898 99999999887766544 2221 12  22222  1223333333222  37899


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +|.++|.
T Consensus        80 vi~~ag~   86 (276)
T PRK06482         80 VVSNAGY   86 (276)
T ss_pred             EEECCCC
Confidence            9998874

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.046  Score=49.15  Aligned_cols=79  Identities=18%  Similarity=0.186  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-Hhc-----CCc-EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF-----GVT-EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~-----g~~-~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+ +.+     +.. +.+  |..+  ..+..+.+.++..
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~   91 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS--LASVRAAADALRA   91 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHh
Confidence            4689999987 9999999998888899 899999887765432 111     111 122  2222  1223333333322


Q ss_pred             --CCccEEEEcCCc
Q 020435          209 --GGADYCFECVGL  220 (326)
Q Consensus       209 --~g~d~v~d~~g~  220 (326)
                        +++|++|+++|.
T Consensus        92 ~~~~iD~li~nAg~  105 (306)
T PRK06197         92 AYPRIDLLINNAGV  105 (306)
T ss_pred             hCCCCCEEEECCcc
Confidence              279999998873

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=95.99  E-value=0.038  Score=48.22  Aligned_cols=78  Identities=26%  Similarity=0.287  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH---hcCCcE-E--EcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK---RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~---~~g~~~-v--i~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+.+++++...+...   ..+.+. .  .|..+  .++..+.+.+...  +
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLET--YAGAQAAMAAAVEAFG   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC--HHHHHHHHHHHHHHcC
Confidence            3679999987 9999999999988999 8999998754333332   234321 1  23222  1233333333322  3


Q ss_pred             CccEEEEcCC
Q 020435          210 GADYCFECVG  219 (326)
Q Consensus       210 g~d~v~d~~g  219 (326)
                      ++|++++++|
T Consensus        84 ~id~lv~nAg   93 (260)
T PRK12823         84 RIDVLINNVG   93 (260)
T ss_pred             CCeEEEECCc
Confidence            7999999886

>PRK08263 short chain dehydrogenase; Provisional

Probab=95.98  E-value=0.049  Score=48.12  Aligned_cols=80  Identities=16%  Similarity=0.129  Sum_probs=51.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCC-cEEEcCCCCCCccHHHHHHHhcC--CCccEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV-TEFVNSKNCGDKSVSQIIIDMTD--GGADYC  214 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~-~~vi~~~~~~~~~~~~~i~~~~~--~g~d~v  214 (326)
                      +.+|||+|+ |.+|..+++.+...|. +|+.+++++++.+.+.+ ++. -+.+..+-.+..++.+.+.+...  +++|++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIV   81 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            468999987 9999999998888898 89999998887765543 221 12222211011233333333221  379999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      +.|+|.
T Consensus        82 i~~ag~   87 (275)
T PRK08263         82 VNNAGY   87 (275)
T ss_pred             EECCCC
Confidence            999874

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.98  E-value=0.047  Score=48.22  Aligned_cols=80  Identities=26%  Similarity=0.253  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      ++.+++|+|+ |.+|..+++.+...|+ +|+.+++++++.+.+.    ..+.. +.+..+-....+..+.+.+...  ++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   87 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP   87 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999987 9999999999999999 8999998876654332    22322 2222111011223333333222  38


Q ss_pred             ccEEEEcCC
Q 020435          211 ADYCFECVG  219 (326)
Q Consensus       211 ~d~v~d~~g  219 (326)
                      +|++|++++
T Consensus        88 id~li~~ag   96 (278)
T PRK08277         88 CDILINGAG   96 (278)
T ss_pred             CCEEEECCC
Confidence            999999887

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.96  E-value=0.046  Score=47.65  Aligned_cols=78  Identities=18%  Similarity=0.248  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc--EEE--cCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~--~vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .++++||+|+   +++|.++++.+...|+ +|+.+.++++..+.++++...  +.+  |..+  .++..+.+.+...  +
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g   82 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS--DESIERAFATIKERVG   82 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCC--HHHHHHHHHHHHHHhC
Confidence            4789999986   3899999999988999 899998875444444443211  122  2222  2233333333322  3


Q ss_pred             CccEEEEcCC
Q 020435          210 GADYCFECVG  219 (326)
Q Consensus       210 g~d~v~d~~g  219 (326)
                      .+|++++++|
T Consensus        83 ~iD~lv~nAg   92 (252)
T PRK06079         83 KIDGIVHAIA   92 (252)
T ss_pred             CCCEEEEccc
Confidence            7999998877

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.96  E-value=0.12  Score=37.60  Aligned_cols=85  Identities=26%  Similarity=0.289  Sum_probs=56.0

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC---CCEEEEE-cCChhHHHHH-HhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          142 TVVIFGLGSIGLAVAEGARLCG---ATRIIGV-DVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g---~~~V~~~-~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      +|.|+|+|.+|.++++-+...|   . +|+.+ .+++++.+.+ ++++.. +..      .+..+.+++     .|+||-
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~-~~~------~~~~~~~~~-----advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQ-ATA------DDNEEAAQE-----ADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTE-EES------EEHHHHHHH-----TSEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhccc-ccc------CChHHhhcc-----CCEEEE
Confidence            5778899999999999888888   6 78845 9999988876 556653 222      133444443     899999


Q ss_pred             cCCcHHHHHHHHHH---hhcCCcEEEEe
Q 020435          217 CVGLASLVQEAYAC---CRKGWGKTIVL  241 (326)
Q Consensus       217 ~~g~~~~~~~~~~~---l~~~~G~~v~~  241 (326)
                      |+.... +...+..   ..++ ..++.+
T Consensus        68 av~p~~-~~~v~~~i~~~~~~-~~vis~   93 (96)
T PF03807_consen   68 AVKPQQ-LPEVLSEIPHLLKG-KLVISI   93 (96)
T ss_dssp             -S-GGG-HHHHHHHHHHHHTT-SEEEEE
T ss_pred             EECHHH-HHHHHHHHhhccCC-CEEEEe
Confidence            988776 4444433   4454 555544

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02253 xanthoxin dehydrogenase

Probab=95.95  E-value=0.042  Score=48.59  Aligned_cols=79  Identities=22%  Similarity=0.253  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCC---cEEE--cCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV---TEFV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~---~~vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|++++++++..+.+ ..++.   .+.+  |..+  .+.+.+.+.+...  +
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~g   93 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV--EDDVSRAVDFTVDKFG   93 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            3678999987 9999999998888899 999999877655433 22321   1222  2222  1223333333222  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus        94 ~id~li~~Ag~  104 (280)
T PLN02253         94 TLDIMVNNAGL  104 (280)
T ss_pred             CCCEEEECCCc
Confidence            79999998874

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.94  E-value=0.021  Score=54.35  Aligned_cols=93  Identities=12%  Similarity=0.104  Sum_probs=62.5

Q ss_pred             hhcccCCCCEEE----EEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCccHHHHHHHh
Q 020435          133 RTANVEVGSTVV----IFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       133 ~~~~~~~~~~vl----I~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ...++++|+.+|    |+|+ |++|.+++|+++..|+ +|+++...+.+....+..+.+ .+++...   ..+.+.+...
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~l~~~  102 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG---ITDPADLKAL  102 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC---CCCHHHHHHH
Confidence            346677888888    8865 9999999999999999 999988766644444444444 4565554   3334444332


Q ss_pred             cCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          207 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       207 ~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      .              ..++..++.|.++ |+++.++..
T Consensus       103 ~--------------~~~~~~l~~l~~~-griv~i~s~  125 (450)
T PRK08261        103 Y--------------EFFHPVLRSLAPC-GRVVVLGRP  125 (450)
T ss_pred             H--------------HHHHHHHHhccCC-CEEEEEccc
Confidence            1              2255667777777 888887754

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.94  E-value=0.049  Score=48.16  Aligned_cols=77  Identities=16%  Similarity=0.151  Sum_probs=50.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC---cEEE--cCCCCCCccHHHHHHHhcC-
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV---TEFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~---~~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+.+    .+.   -+++  |..+  .+++.+ +.+... 
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~-~~~~~~~   78 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD--QNSIHN-FQLVLKE   78 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC--HHHHHH-HHHHHHh
Confidence            568999987 9999999999888899 99999988776554322    221   1222  3222  223333 444322 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|+++.|.|.
T Consensus        79 ~~~id~vv~~ag~   91 (280)
T PRK06914         79 IGRIDLLVNNAGY   91 (280)
T ss_pred             cCCeeEEEECCcc
Confidence             378999998874

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.047  Score=47.69  Aligned_cols=77  Identities=23%  Similarity=0.268  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-----cCCc-EEE--cCCCCCCccHHHHHHHhcCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVT-EFV--NSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-----~g~~-~vi--~~~~~~~~~~~~~i~~~~~~  209 (326)
                      .+.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+     .+.. +.+  |..+  .+++.+.+.+.  +
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~--g   80 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS--PEAREQLAAEA--G   80 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHHh--C
Confidence            4689999987 8999999999988999 99999998876654321     1321 222  2222  12222222221  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|+++++.|.
T Consensus        81 ~id~lv~~ag~   91 (259)
T PRK06125         81 DIDILVNNAGA   91 (259)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.056  Score=46.46  Aligned_cols=80  Identities=13%  Similarity=0.088  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcE-EEcCCCCCCccHHHHHHHh---cCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FVNSKNCGDKSVSQIIIDM---TDG  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~-vi~~~~~~~~~~~~~i~~~---~~~  209 (326)
                      ++.+++|+|+ +++|.+++..+...|+ +|+.+.+++++.+.+    ++.+.+. .+.-+..+.++..+.+.+.   .++
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4679999987 8999999999988999 899999988876543    2334321 2211111123333333332   222


Q ss_pred             CccEEEEcCC
Q 020435          210 GADYCFECVG  219 (326)
Q Consensus       210 g~d~v~d~~g  219 (326)
                      .+|++|++.|
T Consensus        83 ~iD~li~nag   92 (227)
T PRK08862         83 APDVLVNNWT   92 (227)
T ss_pred             CCCEEEECCc
Confidence            7999999886

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.93  E-value=0.12  Score=46.99  Aligned_cols=94  Identities=17%  Similarity=0.092  Sum_probs=64.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHH-HHcCCCEEEEEcCChhHHHHHHh-----cCCcEEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDVISEKFEIGKR-----FGVTEFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la-~~~g~~~V~~~~~~~~~~~~~~~-----~g~~~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      ....+++|+|+|..|...+..+ ...+.++|.+..+++++.+.+.+     ++.. +...+     +..+.+     ...
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~-----~~~~~~-----~~a  193 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVN-----SADEAI-----EEA  193 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeC-----CHHHHH-----hcC
Confidence            4567899999999998777554 45687799999999888765432     3432 22222     233333     258


Q ss_pred             cEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          212 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       212 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+|+.|.++.+. ... ..++++ -+++.+|...
T Consensus       194 DiVi~aT~s~~p-~i~-~~l~~G-~hV~~iGs~~  224 (325)
T PRK08618        194 DIIVTVTNAKTP-VFS-EKLKKG-VHINAVGSFM  224 (325)
T ss_pred             CEEEEccCCCCc-chH-HhcCCC-cEEEecCCCC
Confidence            999999988763 334 889997 8888888754

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=95.92  E-value=0.023  Score=49.39  Aligned_cols=108  Identities=17%  Similarity=0.266  Sum_probs=67.0

Q ss_pred             hhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCcE-E-EcCCCCCCccHHHH
Q 020435          130 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTE-F-VNSKNCGDKSVSQI  202 (326)
Q Consensus       130 ~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~~-v-i~~~~~~~~~~~~~  202 (326)
                      .+...+++++|++|+=-|.|+ |.+...+++..| .++|+..+..+++.+.+++    .|... + +...+...+.+.+ 
T Consensus        31 ~I~~~l~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~-  108 (247)
T PF08704_consen   31 YILMRLDIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE-  108 (247)
T ss_dssp             HHHHHTT--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST-
T ss_pred             HHHHHcCCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc-
Confidence            356678999999999987655 666677777765 3489999999988776643    45431 1 2121100111211 


Q ss_pred             HHHhcCCCccEEE-EcCCcHHHHHHHHHHh-hcCCcEEEEecc
Q 020435          203 IIDMTDGGADYCF-ECVGLASLVQEAYACC-RKGWGKTIVLGV  243 (326)
Q Consensus       203 i~~~~~~g~d~v~-d~~g~~~~~~~~~~~l-~~~~G~~v~~g~  243 (326)
                         -....+|.|| |-..--..+..+.+.| +++ |+++.+..
T Consensus       109 ---~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP  147 (247)
T PF08704_consen  109 ---ELESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSP  147 (247)
T ss_dssp             ---T-TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEES
T ss_pred             ---cccCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECC
Confidence               1112789997 7666666689999999 898 99999864

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.92  E-value=0.031  Score=47.21  Aligned_cols=106  Identities=16%  Similarity=0.010  Sum_probs=61.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh-HHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .+.+|||+|+|.+|...++.+...|+ +|+++..... ....+.+.+.-. .....     +.+.-  +  .++|+||-|
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~~~i~-~~~~~-----~~~~~--l--~~adlViaa   77 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEEGKIR-WKQKE-----FEPSD--I--VDAFLVIAA   77 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhCCCEE-EEecC-----CChhh--c--CCceEEEEc
Confidence            47899999999999999988888998 8888875432 112221222111 11111     11100  0  279999999


Q ss_pred             CCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHh
Q 020435          218 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH  259 (326)
Q Consensus       218 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~  259 (326)
                      .+.+. ....+...... +.++.....  .....|-...+..
T Consensus        78 T~d~e-lN~~i~~~a~~-~~lvn~~d~--~~~~~f~~Pa~~~  115 (202)
T PRK06718         78 TNDPR-VNEQVKEDLPE-NALFNVITD--AESGNVVFPSALH  115 (202)
T ss_pred             CCCHH-HHHHHHHHHHh-CCcEEECCC--CccCeEEEeeEEE
Confidence            99998 55444444454 555555432  2334444444443

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.91  E-value=0.057  Score=47.01  Aligned_cols=81  Identities=15%  Similarity=0.232  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-HH----HHHhcCCc-EEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FE----IGKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-~~----~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      ++.++||+|+ +++|.++++.+...|+ +|+.++++.++ .+    .++..+.. ..+..+-.+.++..+.+.+...  +
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   85 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELG   85 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4679999987 8999999999999999 89999876532 22    22333422 2222111012333333333322  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|+++++.|.
T Consensus        86 ~id~li~~ag~   96 (254)
T PRK06114         86 ALTLAVNAAGI   96 (254)
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.91  E-value=0.035  Score=47.83  Aligned_cols=81  Identities=23%  Similarity=0.287  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCC-c-EE--EcCCCCCCcc---HHHHHHHh
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV-T-EF--VNSKNCGDKS---VSQIIIDM  206 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~-~-~v--i~~~~~~~~~---~~~~i~~~  206 (326)
                      ++.+++|+|+ |.+|..+++.+...|. +|+++++++++.+.+.    +.+. + ..  .|..+....+   +.+.+.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            3679999987 9999999999988999 8999999887665432    2221 1 11  2221100122   23334443


Q ss_pred             cCCCccEEEEcCCc
Q 020435          207 TDGGADYCFECVGL  220 (326)
Q Consensus       207 ~~~g~d~v~d~~g~  220 (326)
                      ..+.+|++|.+++.
T Consensus        84 ~~~~id~vi~~ag~   97 (239)
T PRK08703         84 TQGKLDGIVHCAGY   97 (239)
T ss_pred             hCCCCCEEEEeccc
Confidence            43478999998884

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.90  E-value=0.06  Score=46.93  Aligned_cols=80  Identities=26%  Similarity=0.381  Sum_probs=51.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCc-EEEcCCCCCCccHHHHHHHhcC--CCccEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EFVNSKNCGDKSVSQIIIDMTD--GGADYC  214 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g~d~v  214 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+.+ ++.. ..+..+-.+.++..+.+.+...  +++|++
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   84 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDIL   84 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            578999987 9999999999998999 99999998887665433 3321 2222111011233333333321  379999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      +.+.+.
T Consensus        85 i~~ag~   90 (257)
T PRK07067         85 FNNAAL   90 (257)
T ss_pred             EECCCc
Confidence            998763

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=95.90  E-value=0.047  Score=47.60  Aligned_cols=80  Identities=20%  Similarity=0.256  Sum_probs=49.7

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-h----cCC--cEEEcCCCCCCccHHHHHHHhcC--C
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R----FGV--TEFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~----~g~--~~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+. +    .+.  -+.+..+-....+..+.+.+...  +
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            468999987 8999999999888899 9999998876654432 1    221  12222221011222222333221  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|+++++.|.
T Consensus        81 ~id~vv~~ag~   91 (259)
T PRK12384         81 RVDLLVYNAGI   91 (259)
T ss_pred             CCCEEEECCCc
Confidence            79999998873

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.90  E-value=0.056  Score=47.88  Aligned_cols=102  Identities=17%  Similarity=0.229  Sum_probs=64.5

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCChh---HHHHH-HhcCCcEEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIG-KRFGVTEFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~~---~~~~~-~~~g~~~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+   +++|.++++.+...|+ +|+.++++++   +.+.+ .+++....+  |..+  .++..+.+.+... 
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~i~~~   80 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSK--PEHFKSLAESLKKD   80 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCC--HHHHHHHHHHHHHH
Confidence            4689999986   4899999999888999 8999888753   22322 334533332  3322  2233333333322 


Q ss_pred             -CCccEEEEcCCcH-----------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          209 -GGADYCFECVGLA-----------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       209 -~g~d~v~d~~g~~-----------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       +++|++++++|..                             ...+..+..+..+ |+++.++..
T Consensus        81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~  145 (274)
T PRK08415         81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYL  145 (274)
T ss_pred             cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecC
Confidence             3899999988731                             0234455667777 899888754

>PRK08589 short chain dehydrogenase; Validated

Probab=95.89  E-value=0.05  Score=48.02  Aligned_cols=79  Identities=24%  Similarity=0.332  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh---cCCc-EE--EcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVT-EF--VNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~---~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      ++.++||+|+ +++|.++++.+...|+ +|++++++++..+.+.+   .+.. ..  .|..+  ..+..+.+.+...  +
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISD--EQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHHHcC
Confidence            4679999987 8999999998888999 99999988332222322   2321 22  23222  1223333333322  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus        82 ~id~li~~Ag~   92 (272)
T PRK08589         82 RVDVLFNNAGV   92 (272)
T ss_pred             CcCEEEECCCC
Confidence            79999998864

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.89  E-value=0.11  Score=46.07  Aligned_cols=99  Identities=13%  Similarity=0.134  Sum_probs=65.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CCcEEEcCCCC---CCccHHHHHHHhcCCCccEEE-
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTEFVNSKNC---GDKSVSQIIIDMTDGGADYCF-  215 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~~~vi~~~~~---~~~~~~~~i~~~~~~g~d~v~-  215 (326)
                      .+|||+|.|. |-.+-.++|+...+++++++.+++=.++++++ +..+....+..   .-++-.+.+++... ++|+|| 
T Consensus        78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~  155 (282)
T COG0421          78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIV  155 (282)
T ss_pred             CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cCCEEEE
Confidence            5999997654 55566778887777999999999888888763 21110000000   00222334444322 899997 


Q ss_pred             EcCCc---------HHHHHHHHHHhhcCCcEEEEec
Q 020435          216 ECVGL---------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       216 d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      |+...         .+.++.+-++|+++ |.++.-+
T Consensus       156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~-Gi~v~q~  190 (282)
T COG0421         156 DSTDPVGPAEALFTEEFYEGCRRALKED-GIFVAQA  190 (282)
T ss_pred             cCCCCCCcccccCCHHHHHHHHHhcCCC-cEEEEec
Confidence            66554         56789999999999 9998874

>PLN02823 spermine synthase

Probab=95.87  E-value=0.086  Score=48.09  Aligned_cols=101  Identities=18%  Similarity=0.136  Sum_probs=62.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC-Cc-EEEcCCCC--CCccHHHHHHHhcCCCccEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-VT-EFVNSKNC--GDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g-~~-~vi~~~~~--~~~~~~~~i~~~~~~g~d~v  214 (326)
                      ...+|||+|+|. |..+..+++..+..+|++++.+++-.+.+++.- .. ..++....  -..+-.+.+++ ..+.+|+|
T Consensus       103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~yDvI  180 (336)
T PLN02823        103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RDEKFDVI  180 (336)
T ss_pred             CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CCCCccEE
Confidence            467999998764 555667778766668999999999888887632 10 01110000  00222334432 33489999


Q ss_pred             E-EcCC-----------cHHHHH-HHHHHhhcCCcEEEEec
Q 020435          215 F-ECVG-----------LASLVQ-EAYACCRKGWGKTIVLG  242 (326)
Q Consensus       215 ~-d~~g-----------~~~~~~-~~~~~l~~~~G~~v~~g  242 (326)
                      | |+..           +...++ .+.+.|+++ |.++.-.
T Consensus       181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q~  220 (336)
T PLN02823        181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG-GIFVTQA  220 (336)
T ss_pred             EecCCCccccCcchhhccHHHHHHHHHHhcCCC-cEEEEec
Confidence            8 6432           223465 788899998 9887653

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.86  E-value=0.058  Score=46.99  Aligned_cols=79  Identities=24%  Similarity=0.409  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH--HHHHHhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~--~~~~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      ++.++||+|+ +++|.++++.+...|+ +|+++.++...  .+.++..+.+ +.+  |..+  .+++.+.+.+...  ++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQ--QKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC--HHHHHHHHHHHHHHcCC
Confidence            4789999987 8999999999999999 89888775432  2233444432 122  3222  2333333333321  37


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+++++.|.
T Consensus        84 iD~lv~~ag~   93 (251)
T PRK12481         84 IDILINNAGI   93 (251)
T ss_pred             CCEEEECCCc
Confidence            9999998874

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.22  Score=42.85  Aligned_cols=81  Identities=16%  Similarity=0.117  Sum_probs=48.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-HH----HHHhcCCc-EEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FE----IGKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-~~----~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+.++.+. .+    .++..+.. +.+..+-...+++.+.+.+...  +
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4679999987 9999999999999999 78777654332 22    22333422 2222221011223333333221  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++|.++|.
T Consensus        83 ~id~vi~~ag~   93 (245)
T PRK12937         83 RIDVLVNNAGV   93 (245)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.85  E-value=0.057  Score=48.96  Aligned_cols=78  Identities=21%  Similarity=0.198  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcC---Cc-EEE--cCCCCCCccHHHHHHHhc--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG---VT-EFV--NSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g---~~-~vi--~~~~~~~~~~~~~i~~~~--~  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+ .++.   .. .++  |..+  ..++.+.+.+..  .
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   81 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD--LDSVRRFVDDFRALG   81 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC--HHHHHHHHHHHHHhC
Confidence            4678999987 9999999998888898 999999988776543 2231   11 122  2222  122222233321  2


Q ss_pred             CCccEEEEcCC
Q 020435          209 GGADYCFECVG  219 (326)
Q Consensus       209 ~g~d~v~d~~g  219 (326)
                      +++|++|+++|
T Consensus        82 ~~iD~li~nAg   92 (322)
T PRK07453         82 KPLDALVCNAA   92 (322)
T ss_pred             CCccEEEECCc
Confidence            26999999887

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.072  Score=46.38  Aligned_cols=73  Identities=21%  Similarity=0.287  Sum_probs=47.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh-HHHHHHhcCCcEEE--cCCCCCCccHHHHHHHhcCCCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFV--NSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~-~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      .+.++||+|+ |++|..+++.+...|. +|+++++++. ..+... .+....+  |..+      .+.+.+.. +++|++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~------~~~~~~~~-~~iDil   83 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESND-ESPNEWIKWECGK------EESLDKQL-ASLDVL   83 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhc-cCCCeEEEeeCCC------HHHHHHhc-CCCCEE
Confidence            3679999987 8999999999988999 9999988762 222211 1111222  2222      12333333 379999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      ++++|.
T Consensus        84 VnnAG~   89 (245)
T PRK12367         84 ILNHGI   89 (245)
T ss_pred             EECCcc
Confidence            999874

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.84  E-value=0.071  Score=46.04  Aligned_cols=42  Identities=19%  Similarity=0.155  Sum_probs=35.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  183 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~  183 (326)
                      .++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~   44 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ   44 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh
Confidence            47899987 9999998888888999 899999998887766543

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.84  E-value=0.18  Score=42.69  Aligned_cols=93  Identities=17%  Similarity=0.163  Sum_probs=61.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh-HHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .|.+|||+|+|.+|..-++.+...|+ +|++++.... ....+.+.|.-..+.. +     +....  +  .++|+||-+
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~~~-~-----~~~~d--l--~~~~lVi~a   76 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWLAR-C-----FDADI--L--EGAFLVIAA   76 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEEeC-C-----CCHHH--h--CCcEEEEEC
Confidence            46799999999999999999999999 8888875443 2233333332122221 1     11111  1  279999999


Q ss_pred             CCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          218 VGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       218 ~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+.+..-.......+.. |..+....
T Consensus        77 t~d~~ln~~i~~~a~~~-~ilvn~~d  101 (205)
T TIGR01470        77 TDDEELNRRVAHAARAR-GVPVNVVD  101 (205)
T ss_pred             CCCHHHHHHHHHHHHHc-CCEEEECC
Confidence            99986456667677776 77776543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PLN03139 formate dehydrogenase; Provisional

Probab=95.84  E-value=0.076  Score=49.34  Aligned_cols=90  Identities=19%  Similarity=0.170  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.||..+++.++.+|. +|++.+++....+.....|+..+        .++.+.+.     ..|+|+-+.
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~-----~sDvV~l~l  263 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGAKFE--------EDLDAMLP-----KCDVVVINT  263 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCceec--------CCHHHHHh-----hCCEEEEeC
Confidence            47899999999999999999999999 99999877544444444554211        12333222     378887555


Q ss_pred             Cc-HH----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 GL-AS----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~-~~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .. +.    +-...+..++++ ..+|.++.
T Consensus       264 Plt~~T~~li~~~~l~~mk~g-a~lIN~aR  292 (386)
T PLN03139        264 PLTEKTRGMFNKERIAKMKKG-VLIVNNAR  292 (386)
T ss_pred             CCCHHHHHHhCHHHHhhCCCC-eEEEECCC
Confidence            53 22    112456677776 66666654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.84  E-value=0.039  Score=49.16  Aligned_cols=76  Identities=13%  Similarity=0.023  Sum_probs=51.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      ++.++||+|+|+.+.+++..+...|+.+|+++.|+.++.+.+ ..++.. .+....      ..+.+.... ..+|+||+
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~------~~~~~~~~~-~~~DiVIn  196 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE------GDSGGLAIE-KAAEVLVS  196 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc------chhhhhhcc-cCCCEEEE
Confidence            477999999999999999999999987899999998887665 334321 111111      001111111 26999999


Q ss_pred             cCCcH
Q 020435          217 CVGLA  221 (326)
Q Consensus       217 ~~g~~  221 (326)
                      |.+..
T Consensus       197 aTp~g  201 (282)
T TIGR01809       197 TVPAD  201 (282)
T ss_pred             CCCCC
Confidence            98754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08317 hypothetical protein; Provisional

Probab=95.83  E-value=0.13  Score=44.15  Aligned_cols=102  Identities=27%  Similarity=0.395  Sum_probs=68.6

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHhc----CC-cEEEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GV-TEFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~~----g~-~~vi~~~~~~~~~~~~~i~  204 (326)
                      +.+...+.++++||..|+|. |..+..+++..+ ..++++++.+++..+.+++.    +. ..++..+.   .++     
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~-----   81 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGL-----   81 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccC-----
Confidence            45667788899999999876 888888888763 23899999999888877654    11 11221111   110     


Q ss_pred             HhcCCCccEEEEcC------CcHHHHHHHHHHhhcCCcEEEEec
Q 020435          205 DMTDGGADYCFECV------GLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       205 ~~~~~g~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ....+.+|+|+...      .-...+..+.++|+++ |.++...
T Consensus        82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  124 (241)
T PRK08317         82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLD  124 (241)
T ss_pred             CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEe
Confidence            11223799987432      2234578999999998 9998765

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=95.83  E-value=0.49  Score=41.20  Aligned_cols=99  Identities=14%  Similarity=0.226  Sum_probs=63.5

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC-cEEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      +.....++.+||-+|+|. |..+..+++ .+. .|++++.+++..+.+++... ..++..+-   .++     ...++.+
T Consensus        36 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~d~---~~~-----~~~~~~f  104 (251)
T PRK10258         36 AMLPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAGDI---ESL-----PLATATF  104 (251)
T ss_pred             HhcCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEcCc---ccC-----cCCCCcE
Confidence            334444678999999875 655555554 576 99999999999888876432 22222111   110     1112279


Q ss_pred             cEEEEcCC------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          212 DYCFECVG------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       212 d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      |+|+....      -...+..+.+.|+++ |.++....
T Consensus       105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~g-G~l~~~~~  141 (251)
T PRK10258        105 DLAWSNLAVQWCGNLSTALRELYRVVRPG-GVVAFTTL  141 (251)
T ss_pred             EEEEECchhhhcCCHHHHHHHHHHHcCCC-eEEEEEeC
Confidence            99986432      234577889999998 99987754

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.82  E-value=0.059  Score=46.52  Aligned_cols=81  Identities=19%  Similarity=0.211  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH----HHhcCCc-EEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~----~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      .+.+|||+|+ |.+|..+++.+...|. +|++++++.++.+.    ++..+.. .++..+-.+..++.+.+.+...  +.
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR   83 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            3578999987 9999999998888898 99999998655433    2333322 2222111011223333333221  27


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|.++.+.+.
T Consensus        84 ~d~vi~~ag~   93 (251)
T PRK12826         84 LDILVANAGI   93 (251)
T ss_pred             CCEEEECCCC
Confidence            9999998754

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.82  E-value=0.058  Score=47.72  Aligned_cols=80  Identities=19%  Similarity=0.291  Sum_probs=48.8

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCChh---HHHHH-HhcCCcEEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~~---~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .+.++||+|+   +++|.++++.+...|+ +|+.+.++++   +.+.+ ++++....+..+-.+.++..+.+.+...  +
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   87 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWG   87 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcC
Confidence            5689999986   5899999999999999 8988877642   23322 3345322222211012233333333322  3


Q ss_pred             CccEEEEcCC
Q 020435          210 GADYCFECVG  219 (326)
Q Consensus       210 g~d~v~d~~g  219 (326)
                      ++|++++++|
T Consensus        88 ~iD~lv~nAG   97 (272)
T PRK08159         88 KLDFVVHAIG   97 (272)
T ss_pred             CCcEEEECCc
Confidence            7999999876

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.82  E-value=0.11  Score=42.04  Aligned_cols=88  Identities=18%  Similarity=0.184  Sum_probs=55.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|||.|+|.+|.--++.+...|+ +|++++  ++..+.+++++.-.. ....+...++         .++|+|+-+.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~~-~~~~~~~~dl---------~~a~lViaaT   78 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYITW-KQKTFSNDDI---------KDAHLIYAAT   78 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcEE-EecccChhcC---------CCceEEEECC
Confidence            47899999999999998888888998 888874  443344444542111 1111111111         2799999999


Q ss_pred             CcHHHHHHHHHHhhcCCcEEEEe
Q 020435          219 GLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       219 g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ++.. .+..+...... +.++..
T Consensus        79 ~d~e-~N~~i~~~a~~-~~~vn~   99 (157)
T PRK06719         79 NQHA-VNMMVKQAAHD-FQWVNV   99 (157)
T ss_pred             CCHH-HHHHHHHHHHH-CCcEEE
Confidence            9988 55555555444 434443

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.81  E-value=0.069  Score=49.70  Aligned_cols=95  Identities=17%  Similarity=0.171  Sum_probs=65.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .+.++||+|+|-+|..++..+...|..++++..|+.++.+. ++++|+. ++..++     +.+.+.     .+|+||.+
T Consensus       177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~e-----l~~~l~-----~~DvViss  245 (414)
T COG0373         177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALEE-----LLEALA-----EADVVISS  245 (414)
T ss_pred             ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHHH-----HHHhhh-----hCCEEEEe
Confidence            67899999999999999999999998799999999988764 6778853 332222     222222     59999999


Q ss_pred             CCcHHH---HHHHHHHhhcCCc-EEEEeccC
Q 020435          218 VGLASL---VQEAYACCRKGWG-KTIVLGVD  244 (326)
Q Consensus       218 ~g~~~~---~~~~~~~l~~~~G-~~v~~g~~  244 (326)
                      .+.++.   -....+.++.... -++.++.+
T Consensus       246 Tsa~~~ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         246 TSAPHPIITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             cCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence            888652   2244445555412 34556553

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=95.80  E-value=0.065  Score=46.66  Aligned_cols=81  Identities=19%  Similarity=0.304  Sum_probs=49.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH--HHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcC--CCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GGAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~--~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g~d  212 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+.+++....  .+.+++.+.+ +.+..+-.+.++..+.+.+...  +++|
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            3679999987 8999999999988999 88888764322  2334444422 2222221012333333333322  3799


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      ++++++|.
T Consensus        88 ~li~~Ag~   95 (253)
T PRK08993         88 ILVNNAGL   95 (253)
T ss_pred             EEEECCCC
Confidence            99998874

>PRK07985 oxidoreductase; Provisional

Probab=95.79  E-value=0.15  Score=45.65  Aligned_cols=102  Identities=21%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh--hHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS--EKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~--~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+.+.++.  +..+.+    +..+.. +.+  |..+  .++..+.+.+...
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~  124 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD--EKFARSLVHEAHK  124 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4679999987 8999999999999999 888876543  222222    223422 122  2222  1233333333322


Q ss_pred             --CCccEEEEcCCcH--------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          209 --GGADYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       209 --~g~d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                        +++|+++.+.|..                          ...+.+...++.+ |++|.++..
T Consensus       125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~iv~iSS~  187 (294)
T PRK07985        125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKG-ASIITTSSI  187 (294)
T ss_pred             HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcC-CEEEEECCc
Confidence              3799999887631                          1233444555677 899988753

>PRK07574 formate dehydrogenase; Provisional

Probab=95.79  E-value=0.077  Score=49.33  Aligned_cols=90  Identities=21%  Similarity=0.208  Sum_probs=58.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.||..+++.++.+|. +|++.+++....+..+.+++...        .++.+.+.     ..|+|+-+.
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell~-----~aDvV~l~l  256 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGLTYH--------VSFDSLVS-----VCDVVTIHC  256 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCceec--------CCHHHHhh-----cCCEEEEcC
Confidence            46799999999999999999999999 99999987644444444443211        12222221     478887655


Q ss_pred             Cc-HHH----HHHHHHHhhcCCcEEEEecc
Q 020435          219 GL-ASL----VQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~-~~~----~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .. +.+    -...+..|+++ ..+|.++.
T Consensus       257 Plt~~T~~li~~~~l~~mk~g-a~lIN~aR  285 (385)
T PRK07574        257 PLHPETEHLFDADVLSRMKRG-SYLVNTAR  285 (385)
T ss_pred             CCCHHHHHHhCHHHHhcCCCC-cEEEECCC
Confidence            53 221    12456677776 66666654

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.79  E-value=0.07  Score=47.24  Aligned_cols=79  Identities=25%  Similarity=0.300  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhc--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    +..+.+ ..+  |..+  .+++.+.+.+..  -
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   81 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH--REEVTHLADEAFRLL   81 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 8999999999999999 899999887665543    223432 122  2222  122333232221  1


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|+++++.|.
T Consensus        82 g~id~li~nAg~   93 (275)
T PRK05876         82 GHVDVVFSNAGI   93 (275)
T ss_pred             CCCCEEEECCCc
Confidence            379999998873

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=95.78  E-value=0.066  Score=46.45  Aligned_cols=77  Identities=16%  Similarity=0.278  Sum_probs=51.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCc-EEE--cCCCCCCccHHHHHHHhcC--CCccE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      .+++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+.. ++.+ ..+  |..+  .+++.+.+.+...  +++|+
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~~~id~   77 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWRNIDV   77 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            36899987 9999999999988999 99999999887765543 3432 122  2222  1223333333222  37999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      ++.++|.
T Consensus        78 vi~~ag~   84 (248)
T PRK10538         78 LVNNAGL   84 (248)
T ss_pred             EEECCCc
Confidence            9988764

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.77  E-value=0.065  Score=46.11  Aligned_cols=81  Identities=21%  Similarity=0.284  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      .+.++||+|+ |.+|..++..+...|. +|+.+++++++.+.+    +..+.. .++..+-.+..++.+.+++...  ++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            3578999987 8999999998888999 999999987765543    223322 1222221011233333433322  27


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++|.+.|.
T Consensus        85 id~vi~~ag~   94 (239)
T PRK07666         85 IDILINNAGI   94 (239)
T ss_pred             ccEEEEcCcc
Confidence            9999998864

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=95.76  E-value=0.35  Score=43.06  Aligned_cols=60  Identities=23%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEc---CChhHHHHHHhcCCcEEEcCC
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD---VISEKFEIGKRFGVTEFVNSK  192 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~---~~~~~~~~~~~~g~~~vi~~~  192 (326)
                      .+...+++|.+|+---+|++|.+++.+|+..|. +++.+.   .|.++.+.++.+|++.+....
T Consensus        54 e~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy-~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          54 EKRGLLKPGGTIVEATSGNTGIALAMVAAAKGY-RLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            345568999865544469999999999999999 666665   477888899999997666555

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.76  E-value=0.034  Score=49.47  Aligned_cols=94  Identities=17%  Similarity=0.114  Sum_probs=60.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .+.+++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+. .++....+.. +   .+..+.+     ..+|+|++|
T Consensus       122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~---~~~~~~~-----~~~DivIna  192 (278)
T PRK00258        122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-D---LELQEEL-----ADFDLIINA  192 (278)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-c---ccchhcc-----ccCCEEEEC
Confidence            5679999999999999999999999559999999988876553 3432110111 1   0110111     269999999


Q ss_pred             CCcHHH-----HHHHHHHhhcCCcEEEEec
Q 020435          218 VGLASL-----VQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       218 ~g~~~~-----~~~~~~~l~~~~G~~v~~g  242 (326)
                      ......     .......+.+. ..++.+-
T Consensus       193 Tp~g~~~~~~~~~~~~~~l~~~-~~v~Div  221 (278)
T PRK00258        193 TSAGMSGELPLPPLPLSLLRPG-TIVYDMI  221 (278)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCC-CEEEEee
Confidence            875431     01223566776 6666663

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.76  E-value=0.05  Score=43.50  Aligned_cols=96  Identities=22%  Similarity=0.231  Sum_probs=60.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      .++.+++|+|+|.+|..+++.+...|..+|+++++++++.+. .++++... +....   .+..+.     -+++|+|+.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-~~~~~---~~~~~~-----~~~~Dvvi~   87 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-IAIAY---LDLEEL-----LAEADLIIN   87 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-cceee---cchhhc-----cccCCEEEe
Confidence            457899999999999999988888863389999998887665 44455321 00000   111111     137999999


Q ss_pred             cCCcHHH----HHHHHHHhhcCCcEEEEecc
Q 020435          217 CVGLASL----VQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       217 ~~g~~~~----~~~~~~~l~~~~G~~v~~g~  243 (326)
                      |++....    .......++++ ..++.++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~v~D~~~  117 (155)
T cd01065          88 TTPVGMKPGDELPLPPSLLKPG-GVVYDVVY  117 (155)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCC-CEEEEcCc
Confidence            9887541    11223446676 66666654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06701 short chain dehydrogenase; Provisional

Probab=95.76  E-value=0.21  Score=44.64  Aligned_cols=81  Identities=20%  Similarity=0.147  Sum_probs=48.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-HHH----HHhcCCcE-EEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEI----GKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-~~~----~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+.++.++ .+.    ++..+... ++..+-.+...+.+.+.+...  +
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~  123 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG  123 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4779999987 8999999998888899 89988876432 222    22233322 222211011222233333222  2


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++|.+++.
T Consensus       124 ~iD~lI~~Ag~  134 (290)
T PRK06701        124 RLDILVNNAAF  134 (290)
T ss_pred             CCCEEEECCcc
Confidence            79999988774

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.75  E-value=0.053  Score=47.14  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=48.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcE-EEcCCCCCCccHHHHHHHhcC--CCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~g~d~v  214 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.+++++++.  .....+.. ..|..+  ..++.+.+.+...  +.+|++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~~--~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~v   79 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPET--VDGRPAEFHAADVRD--PDQVAALVDAIVERHGRLDVL   79 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhhh--hcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4789999987 8999999999988999 999999876551  11111211 122222  1223333333321  378999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      |.+.|.
T Consensus        80 i~~ag~   85 (252)
T PRK07856         80 VNNAGG   85 (252)
T ss_pred             EECCCC
Confidence            998873

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.069  Score=46.69  Aligned_cols=79  Identities=25%  Similarity=0.325  Sum_probs=49.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh---cCCc-EEE--cCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVT-EFV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~---~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.++++.+..+...+   .+.. ..+  |..+  ..++.+.+.+...  +
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRD--PASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            4679999987 9999999999988999 89999988754333322   2322 122  2222  1222222332221  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      .+|++|.+.+.
T Consensus        82 ~id~vi~~ag~   92 (263)
T PRK08226         82 RIDILVNNAGV   92 (263)
T ss_pred             CCCEEEECCCc
Confidence            79999998883

>PRK06398 aldose dehydrogenase; Validated

Probab=95.74  E-value=0.036  Score=48.49  Aligned_cols=75  Identities=20%  Similarity=0.222  Sum_probs=48.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC--CCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~--~g~d~v~  215 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+.+++++++...+..    ...|..+  .+++.+.+.+...  +++|+++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~----~~~D~~~--~~~i~~~~~~~~~~~~~id~li   77 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYNDVDY----FKVDVSN--KEQVIKGIDYVISKYGRIDILV   77 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccCceEE----EEccCCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence            3679999987 8999999999999999 99999887654321100    1123222  1233333333322  2799999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      ++.|.
T Consensus        78 ~~Ag~   82 (258)
T PRK06398         78 NNAGI   82 (258)
T ss_pred             ECCCC
Confidence            98873

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.72  E-value=0.099  Score=46.37  Aligned_cols=83  Identities=22%  Similarity=0.285  Sum_probs=60.0

Q ss_pred             hhhhccc-CCCCEEEEEccC-HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC
Q 020435          131 AWRTANV-EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       131 l~~~~~~-~~~~~vlI~Gag-~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      +++..++ -.|.+|+|+|.| .+|.-+++++...|+ +|+...+..                      .++.+.++    
T Consensus       148 ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t----------------------~~l~~~~~----  200 (286)
T PRK14175        148 ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS----------------------KDMASYLK----  200 (286)
T ss_pred             HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc----------------------hhHHHHHh----
Confidence            3344433 368999999985 599999999999999 888776432                      12222222    


Q ss_pred             CCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          209 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       209 ~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       .+|+||.++|.+..+..  +.++++ ..+|.+|..
T Consensus       201 -~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~  232 (286)
T PRK14175        201 -DADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNT  232 (286)
T ss_pred             -hCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCC
Confidence             48999999999875554  458887 888888864

>PRK06720 hypothetical protein; Provisional

Probab=95.70  E-value=0.097  Score=42.82  Aligned_cols=81  Identities=22%  Similarity=0.183  Sum_probs=49.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhc--CCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMT--DGG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~--~~g  210 (326)
                      ++.+++|+|+ +++|..++..+...|+ +|+.++++.+..+..    +..+.. ..+..+-....++.+.+.+..  -++
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~   93 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR   93 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4779999987 7999999998888898 899999887655332    223432 222222100122222222221  137


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus        94 iDilVnnAG~  103 (169)
T PRK06720         94 IDMLFQNAGL  103 (169)
T ss_pred             CCEEEECCCc
Confidence            8999988774

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.70  E-value=0.14  Score=40.50  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=28.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      +|+|.|+|++|..+++.+...|.+++..++.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999998888888754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.70  E-value=0.072  Score=46.23  Aligned_cols=81  Identities=21%  Similarity=0.246  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEEcCCCCCCccHHHHHHHhc--CCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFVNSKNCGDKSVSQIIIDMT--DGG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi~~~~~~~~~~~~~i~~~~--~~g  210 (326)
                      ++.++||+|+ |.+|..+++.+...|. +|+++++++++.+.+.    ..+.. +.+.-+-....++.+.+.+..  .++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   81 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGG   81 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            3579999987 9999999999888899 9999999887655432    22322 222211101122222233222  137


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++|.+++.
T Consensus        82 ~d~vi~~a~~   91 (258)
T PRK12429         82 VDILVNNAGI   91 (258)
T ss_pred             CCEEEECCCC
Confidence            9999998873

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=95.70  E-value=0.048  Score=46.30  Aligned_cols=99  Identities=18%  Similarity=0.199  Sum_probs=64.0

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcE--EEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~  204 (326)
                      +....+++++++||-.|+|. |..+..+++.. . +|++++.+++..+.+++    .+.+.  ++..+.      .+   
T Consensus        70 l~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~------~~---  137 (212)
T PRK00312         70 MTELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG------WK---  137 (212)
T ss_pred             HHHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc------cc---
Confidence            45667888999999998765 55555566554 3 89999999887666543    34332  222211      11   


Q ss_pred             HhcC-CCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          205 DMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       205 ~~~~-~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+.. +.+|+|+...........+.+.|+++ |+++..-
T Consensus       138 ~~~~~~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~~  175 (212)
T PRK00312        138 GWPAYAPFDRILVTAAAPEIPRALLEQLKEG-GILVAPV  175 (212)
T ss_pred             CCCcCCCcCEEEEccCchhhhHHHHHhcCCC-cEEEEEE
Confidence            1111 37999985545455467888999998 9987653

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.70  E-value=0.076  Score=46.69  Aligned_cols=78  Identities=15%  Similarity=0.221  Sum_probs=47.8

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcEEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g--~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ +  ++|.++++.+...|+ +|+.+++++...+.+++    .+....+  |-.+  .+++.+.+.+... 
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   81 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAE--DASIDAMFAELGKV   81 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCC--HHHHHHHHHHHHhh
Confidence            4679999987 3  799999998888999 89888876422222222    2322222  2222  2333333333322 


Q ss_pred             -CCccEEEEcCC
Q 020435          209 -GGADYCFECVG  219 (326)
Q Consensus       209 -~g~d~v~d~~g  219 (326)
                       +.+|++++++|
T Consensus        82 ~g~iD~linnAg   93 (262)
T PRK07984         82 WPKFDGFVHSIG   93 (262)
T ss_pred             cCCCCEEEECCc
Confidence             37999999887

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.073  Score=46.33  Aligned_cols=80  Identities=20%  Similarity=0.258  Sum_probs=50.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCC--cEEEcCCCCCCccHHHHHHHhcC--CCccE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV--TEFVNSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~--~~vi~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      +.++||+|+ |.+|..++..+...|+ +|++++++.++.+.+. .+..  -+.+..+-.+.+++.+.+.+...  +++|+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   80 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV   80 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            458999987 8999999998888898 8999999887765443 2221  12222221011223333333322  26999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      ++.+.+.
T Consensus        81 vi~~ag~   87 (257)
T PRK07074         81 LVANAGA   87 (257)
T ss_pred             EEECCCC
Confidence            9998874

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.69  E-value=0.16  Score=44.42  Aligned_cols=97  Identities=23%  Similarity=0.151  Sum_probs=67.6

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC-
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~-  208 (326)
                      +.......++++||-+|+|. |..+..+++.. +. +|++++.+++..+.+++.+.+ ++..      +..    ++.. 
T Consensus        21 ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~-~~~~------d~~----~~~~~   87 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVD-ARTG------DVR----DWKPK   87 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCc-EEEc------Chh----hCCCC
Confidence            44556667889999999866 66777777765 55 899999999988888776543 2221      111    1222 


Q ss_pred             CCccEEEEcCC-----c-HHHHHHHHHHhhcCCcEEEEe
Q 020435          209 GGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       209 ~g~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +.+|+|+....     . ...+..+.+.|+++ |.++..
T Consensus        88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~  125 (255)
T PRK14103         88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ  125 (255)
T ss_pred             CCceEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence            38999986332     2 34577889999998 998875

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.68  E-value=0.084  Score=45.93  Aligned_cols=79  Identities=18%  Similarity=0.305  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ++.+++|+|+ |.+|..+++.+...|+ +|+.+++++++.+.+    ++.+.. ..+  |..+  ..++.+.+.+...  
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   86 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD--EEAVAAAFARIDAEH   86 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            4789999987 8999999998888899 999999987765443    233421 222  2222  1233333333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|.++.+.+.
T Consensus        87 ~~id~vi~~ag~   98 (256)
T PRK06124         87 GRLDILVNNVGA   98 (256)
T ss_pred             CCCCEEEECCCC
Confidence            378999998884

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.68  E-value=0.16  Score=44.43  Aligned_cols=100  Identities=19%  Similarity=0.164  Sum_probs=66.7

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC-cEEEcCCCCCCccHHHHHHHhcCC
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      +.....+.++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++.-. ..++..+      ..    .+...
T Consensus        23 ll~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d------~~----~~~~~   91 (258)
T PRK01683         23 LLARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEAD------IA----SWQPP   91 (258)
T ss_pred             HHhhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECc------hh----ccCCC
Confidence            34455667889999999865 6667778877643399999999988887765321 1222221      11    12223


Q ss_pred             -CccEEEEcCC------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          210 -GADYCFECVG------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       210 -g~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                       .+|+|+....      ....++.+.+.|+++ |.++...
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~~  130 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQM  130 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEEC
Confidence             8999985433      234588899999998 9988753

>PRK08264 short chain dehydrogenase; Validated

Probab=95.67  E-value=0.059  Score=46.31  Aligned_cols=75  Identities=19%  Similarity=0.210  Sum_probs=48.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc-EEE--cCCCCCCccHHHHHHHhcCCCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFV--NSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      .+.++||+|+ |.+|..+++.+...|..+|++++++.++.+.   .+.. +++  |..+  .+++.+.+.. . +.+|++
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~--~~~~~~~~~~-~-~~id~v   77 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTD--PASVAAAAEA-A-SDVTIL   77 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCC--HHHHHHHHHh-c-CCCCEE
Confidence            4678999987 9999999999988897579999988766543   2211 222  2222  1222222222 1 268999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      |.+.+.
T Consensus        78 i~~ag~   83 (238)
T PRK08264         78 VNNAGI   83 (238)
T ss_pred             EECCCc
Confidence            998876

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.67  E-value=0.061  Score=51.59  Aligned_cols=78  Identities=24%  Similarity=0.341  Sum_probs=54.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh---------------------hHHHHHHhcCCcEEEcCCCCCCc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS---------------------EKFEIGKRFGVTEFVNSKNCGDK  197 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~---------------------~~~~~~~~~g~~~vi~~~~~~~~  197 (326)
                      ++++|+|+|+|+.|+.++..++..|. +|++++..+                     ...++++++|++..++..-  ..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v--~~  216 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV--GR  216 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe--CC
Confidence            57899999999999999999999999 888887654                     2345677888865554321  01


Q ss_pred             cHHHHHHHhcCCCccEEEEcCCcHH
Q 020435          198 SVSQIIIDMTDGGADYCFECVGLAS  222 (326)
Q Consensus       198 ~~~~~i~~~~~~g~d~v~d~~g~~~  222 (326)
                      ++  .+.... .++|.||.+.|...
T Consensus       217 ~~--~~~~~~-~~~D~vilAtGa~~  238 (467)
T TIGR01318       217 DI--SLDDLL-EDYDAVFLGVGTYR  238 (467)
T ss_pred             cc--CHHHHH-hcCCEEEEEeCCCC
Confidence            11  111111 26999999999753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=95.67  E-value=0.036  Score=46.88  Aligned_cols=101  Identities=18%  Similarity=0.268  Sum_probs=66.3

Q ss_pred             hcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHH
Q 020435          134 TANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       134 ~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~  205 (326)
                      ..+.....+||-+|.+. |+.++.+|+.++. .+|+.++.+++..+.+++    .|..   +++.      .+..+.+.+
T Consensus        40 l~~~~~~k~vLEIGt~~-GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~------gda~~~l~~  112 (205)
T PF01596_consen   40 LVRLTRPKRVLEIGTFT-GYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE------GDALEVLPE  112 (205)
T ss_dssp             HHHHHT-SEEEEESTTT-SHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE------S-HHHHHHH
T ss_pred             HHHhcCCceEEEecccc-ccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE------eccHhhHHH
Confidence            34455678999998754 7888888887642 299999999988777653    4532   2343      334444444


Q ss_pred             hcC----CCccEEE-EcCCcHH--HHHHHHHHhhcCCcEEEEec
Q 020435          206 MTD----GGADYCF-ECVGLAS--LVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       206 ~~~----~g~d~v~-d~~g~~~--~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +..    +.||.|| |+.-..+  .+..+++.|+++ |.++.=.
T Consensus       113 l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~g-gvii~DN  155 (205)
T PF01596_consen  113 LANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPG-GVIIADN  155 (205)
T ss_dssp             HHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEE-EEEEEET
T ss_pred             HHhccCCCceeEEEEcccccchhhHHHHHhhhccCC-eEEEEcc
Confidence            432    3799998 7765533  366788999996 6666543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK07577 short chain dehydrogenase; Provisional

Probab=95.66  E-value=0.05  Score=46.58  Aligned_cols=73  Identities=19%  Similarity=0.246  Sum_probs=49.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcCC-CccEEEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDG-GADYCFE  216 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d  216 (326)
                      +.++||+|+ |.+|..+++.+...|. +|+++.++.++     ....+ ...|..+  .+++.+.+.+.... +.|+++.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~-----~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~d~vi~   74 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAID-----DFPGELFACDLAD--IEQTAATLAQINEIHPVDAIVN   74 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCccc-----ccCceEEEeeCCC--HHHHHHHHHHHHHhCCCcEEEE
Confidence            578999987 9999999999988998 99999987654     11211 1123222  23333444444433 7899999


Q ss_pred             cCCc
Q 020435          217 CVGL  220 (326)
Q Consensus       217 ~~g~  220 (326)
                      +.+.
T Consensus        75 ~ag~   78 (234)
T PRK07577         75 NVGI   78 (234)
T ss_pred             CCCC
Confidence            8874

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.64  E-value=0.058  Score=45.25  Aligned_cols=100  Identities=12%  Similarity=0.151  Sum_probs=60.4

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHh
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      +.+.....++.+||-.|+|. |..+..+++ .|. +|++++.+++..+.+++    .+..  +....   .+... . . 
T Consensus        22 l~~~~~~~~~~~vLDiGcG~-G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~---~d~~~-~-~-   90 (195)
T TIGR00477        22 VREAVKTVAPCKTLDLGCGQ-GRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLP--LRTDA---YDINA-A-A-   90 (195)
T ss_pred             HHHHhccCCCCcEEEeCCCC-CHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEe---ccchh-c-c-
Confidence            34445555677999998765 666666665 477 99999999987776643    2322  11100   11100 0 1 


Q ss_pred             cCCCccEEEEcCC-----c---HHHHHHHHHHhhcCCcEEEEec
Q 020435          207 TDGGADYCFECVG-----L---ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       207 ~~~g~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ..+.+|+|+....     .   ...++.+.+.|+++ |.++.+.
T Consensus        91 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~~  133 (195)
T TIGR00477        91 LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIVA  133 (195)
T ss_pred             ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEEE
Confidence            1237999975421     1   24577888999998 9965553

Part of a tellurite-reducing operon tehA and tehB

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.64  E-value=0.12  Score=45.98  Aligned_cols=43  Identities=23%  Similarity=0.220  Sum_probs=37.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  181 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~  181 (326)
                      ++.++||.|+|+.+.+++..+...|+.+++++.|+.++.+.+.
T Consensus       126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            4679999999999999998888899878999999988876653

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.63  E-value=0.079  Score=46.14  Aligned_cols=79  Identities=18%  Similarity=0.199  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.+|||+|+ +.+|..+++.+...|+ +|+.++++.++.+.+    ++.+.+ +++  |..+  .++..+.+.+...  
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   86 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFALSKL   86 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            3789999987 9999999998888999 899998877765443    223322 222  2222  1223333333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|+++.+.+.
T Consensus        87 ~~~d~li~~ag~   98 (255)
T PRK06113         87 GKVDILVNNAGG   98 (255)
T ss_pred             CCCCEEEECCCC
Confidence            379999998873

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=95.63  E-value=0.067  Score=46.24  Aligned_cols=106  Identities=25%  Similarity=0.458  Sum_probs=63.4

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHH
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~  204 (326)
                      .+....++|++||-.|+|+ |..+..+++..+. .+|++++-+++-++.+++    .+..  ..+..+.   +++     
T Consensus        40 ~~~~~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da---~~l-----  110 (233)
T PF01209_consen   40 IKLLGLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA---EDL-----  110 (233)
T ss_dssp             HHHHT--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT---TB------
T ss_pred             HhccCCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH---HHh-----
Confidence            3445678899999998765 7777788887652 389999999998887754    2221  1222211   111     


Q ss_pred             HhcCCCccEEEEcCCc------HHHHHHHHHHhhcCCcEEEEeccCCCC
Q 020435          205 DMTDGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGVDQPG  247 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~~~  247 (326)
                      ...++.+|+|..+.+-      ...++++.+.|+|+ |+++.+....+.
T Consensus       111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG-G~l~ile~~~p~  158 (233)
T PF01209_consen  111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPG-GRLVILEFSKPR  158 (233)
T ss_dssp             -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE-EEEEEEEEEB-S
T ss_pred             cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC-eEEEEeeccCCC
Confidence            1112379999876653      34588999999998 999998876544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=95.63  E-value=0.053  Score=54.49  Aligned_cols=113  Identities=22%  Similarity=0.277  Sum_probs=68.3

Q ss_pred             ccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC
Q 020435           94 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus        94 ~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      ..+|+-+++...|.+ +..+.|++=.-.++          ....-.+.++||+|+ |.+|.++++.+...|+ +|+++++
T Consensus       379 ~~~~~~~~~~~~f~~-eyw~~e~~kl~~~~----------~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r  446 (676)
T TIGR02632       379 VSEYVSLPEQEAFDI-EYWPLEEAKLRRMP----------KEKTLARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL  446 (676)
T ss_pred             ccceecCchhhccch-hhhhhhHHhhccCC----------CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence            345666777777766 55555554321111          011124789999987 9999999999988999 9999999


Q ss_pred             ChhHHHHHH-h----cCCc--EEE--cCCCCCCccHHHHHHHhcC--CCccEEEEcCCc
Q 020435          173 ISEKFEIGK-R----FGVT--EFV--NSKNCGDKSVSQIIIDMTD--GGADYCFECVGL  220 (326)
Q Consensus       173 ~~~~~~~~~-~----~g~~--~vi--~~~~~~~~~~~~~i~~~~~--~g~d~v~d~~g~  220 (326)
                      +.++.+.+. .    .+..  ..+  |..+  ..++.+.+.+...  +++|++++++|.
T Consensus       447 ~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd--~~~v~~a~~~i~~~~g~iDilV~nAG~  503 (676)
T TIGR02632       447 NLEAAEAVAAEINGQFGAGRAVALKMDVTD--EQAVKAAFADVALAYGGVDIVVNNAGI  503 (676)
T ss_pred             CHHHHHHHHHHHHhhcCCCcEEEEECCCCC--HHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence            887665432 1    2221  122  2222  1233333333322  389999998884

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.62  E-value=0.11  Score=43.32  Aligned_cols=76  Identities=26%  Similarity=0.300  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-c----CCcE-EEcCCCCCCccHHHHHHHhcCCCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVTE-FVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~----g~~~-vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      ++.+++|+|+ |.+|..+++.+...|. +|+.+.++.++.+.+.+ +    +... ..+..+  ..++.+.+     .++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~-----~~~   98 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD--DAARAAAI-----KGA   98 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC--HHHHHHHH-----hcC
Confidence            5689999987 9999998888888887 99999998877665432 2    2221 111111  01222222     268


Q ss_pred             cEEEEcCCcHH
Q 020435          212 DYCFECVGLAS  222 (326)
Q Consensus       212 d~v~d~~g~~~  222 (326)
                      |+||.+.....
T Consensus        99 diVi~at~~g~  109 (194)
T cd01078          99 DVVFAAGAAGV  109 (194)
T ss_pred             CEEEECCCCCc
Confidence            99999887665

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.088  Score=45.00  Aligned_cols=74  Identities=19%  Similarity=0.246  Sum_probs=49.1

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcEE-EcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      +++|+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ ++++...+ .|..+  .+++.+.+.+. .+.+|+++++.
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~-~~~id~lv~~a   77 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTD--PASLEEARGLF-PHHLDTIVNVP   77 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCC--HHHHHHHHHHH-hhcCcEEEECC
Confidence            5899987 8999999999988899 999999988876654 33444322 23322  12233333332 23689999876


Q ss_pred             C
Q 020435          219 G  219 (326)
Q Consensus       219 g  219 (326)
                      +
T Consensus        78 g   78 (223)
T PRK05884         78 A   78 (223)
T ss_pred             C
Confidence            4

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.62  E-value=0.086  Score=45.94  Aligned_cols=100  Identities=16%  Similarity=0.153  Sum_probs=60.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc--CCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF--GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~--g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      +.+|||+|+ |.+|..+++.+...|. +|+++.+++++.......  ++. ++..+-   .+..+.+.+....++|+||.
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~-~~~~Dl---~d~~~~l~~~~~~~~d~vi~   91 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQ-IVRADV---TEGSDKLVEAIGDDSDAVIC   91 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceE-EEEeeC---CCCHHHHHHHhhcCCCEEEE
Confidence            679999997 9999999998888898 899999887765443221  232 222111   11112233332227999998


Q ss_pred             cCCcHH-------------HHHHHHHHhhcC-CcEEEEeccC
Q 020435          217 CVGLAS-------------LVQEAYACCRKG-WGKTIVLGVD  244 (326)
Q Consensus       217 ~~g~~~-------------~~~~~~~~l~~~-~G~~v~~g~~  244 (326)
                      +.+...             ....+++.+... .++++.++..
T Consensus        92 ~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         92 ATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             CCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            876421             123444444432 1578887653

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.61  E-value=0.049  Score=48.06  Aligned_cols=79  Identities=16%  Similarity=0.230  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH----HHHhcC-C-cEEEcCCCCCCccHHHHHHHhcCC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFG-V-TEFVNSKNCGDKSVSQIIIDMTDG--  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~----~~~~~g-~-~~vi~~~~~~~~~~~~~i~~~~~~--  209 (326)
                      .|+.|||+|+ +++|.+.++=....|+ +++..+.+++..+    .+++.| + ..+.|-.+  .++..+...+...+  
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~--~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD--REEIYRLAKKVKKEVG  113 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCC--HHHHHHHHHHHHHhcC
Confidence            5899999987 7999988888888888 8888887765543    344445 2 12334333  23444333333333  


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      .+|++++.+|-
T Consensus       114 ~V~ILVNNAGI  124 (300)
T KOG1201|consen  114 DVDILVNNAGI  124 (300)
T ss_pred             CceEEEecccc
Confidence            89999998885

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.61  E-value=0.078  Score=46.25  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=49.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH----HHhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~----~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++.++ ++.+.    +.+.+.+ ..+  |..+  .+...+.+.+...  
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   89 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTK--PESAEKVVKEALEEF   89 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 8999999999999999 89999877 33222    2233422 222  2222  1223233333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|+++.+.|.
T Consensus        90 g~id~li~~ag~  101 (258)
T PRK06935         90 GKIDILVNNAGT  101 (258)
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.61  E-value=0.034  Score=49.28  Aligned_cols=44  Identities=34%  Similarity=0.341  Sum_probs=39.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  182 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~  182 (326)
                      +++++||.|+|+.+.+++.-++..|+.+++++.|+.++.+.+.+
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            47899999999999999999999997799999999998777654

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.60  E-value=0.14  Score=44.09  Aligned_cols=91  Identities=21%  Similarity=0.273  Sum_probs=56.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh-------------------H----HHHHHhcCCc-EEEcCCCCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-------------------K----FEIGKRFGVT-EFVNSKNCG  195 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~-------------------~----~~~~~~~g~~-~vi~~~~~~  195 (326)
                      ..+|+|.|.|++|..++..+...|.++++.++.+.-                   |    .+.++++..+ .+...+.  
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~--   88 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE--   88 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee--
Confidence            468999999999999999999999988888885431                   1    1122233321 2221221  


Q ss_pred             CccH-HHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcC
Q 020435          196 DKSV-SQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG  234 (326)
Q Consensus       196 ~~~~-~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~  234 (326)
                        .+ .+.+.++...++|+|+||..+...-..+.+.+...
T Consensus        89 --~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~  126 (231)
T cd00755          89 --FLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKR  126 (231)
T ss_pred             --ecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHh
Confidence              11 12233343347999999999877444455555554

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN00203 glutamyl-tRNA reductase

Probab=95.59  E-value=0.065  Score=51.77  Aligned_cols=73  Identities=18%  Similarity=0.276  Sum_probs=52.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcC-CcE-EEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG-VTE-FVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g-~~~-vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      +.+|+|+|+|.+|.++++.+...|+.+|+++.++.++.+.+. .++ ... +...+     +..+.+     .++|+||.
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~-----dl~~al-----~~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLD-----EMLACA-----AEADVVFT  335 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHh-----hHHHHH-----hcCCEEEE
Confidence            689999999999999999999999768999999988877654 353 221 11111     122222     26999999


Q ss_pred             cCCcHH
Q 020435          217 CVGLAS  222 (326)
Q Consensus       217 ~~g~~~  222 (326)
                      |.+.+.
T Consensus       336 AT~s~~  341 (519)
T PLN00203        336 STSSET  341 (519)
T ss_pred             ccCCCC
Confidence            987644

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.59  E-value=0.11  Score=47.44  Aligned_cols=36  Identities=28%  Similarity=0.294  Sum_probs=31.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      ...+|+|+|+|++|..+++.+...|.+++..++.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            356899999999999999999999988888888763

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.56  E-value=0.33  Score=36.63  Aligned_cols=92  Identities=20%  Similarity=0.138  Sum_probs=61.5

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHH
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  222 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~  222 (326)
                      |+|.|.|.+|..+++.++..+. +|++++.+++..+.+++.|.. ++..+.    .-.+.+++.--..++.++-+.++..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~-~i~gd~----~~~~~l~~a~i~~a~~vv~~~~~d~   74 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE-VIYGDA----TDPEVLERAGIEKADAVVILTDDDE   74 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE-EEES-T----TSHHHHHHTTGGCESEEEEESSSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc-cccccc----hhhhHHhhcCccccCEEEEccCCHH
Confidence            6788999999999999999776 899999999999999988854 554433    1123344442238999988877655


Q ss_pred             HHHH---HHHHhhcCCcEEEEe
Q 020435          223 LVQE---AYACCRKGWGKTIVL  241 (326)
Q Consensus       223 ~~~~---~~~~l~~~~G~~v~~  241 (326)
                      .-..   ..+-+.+. .+++..
T Consensus        75 ~n~~~~~~~r~~~~~-~~ii~~   95 (116)
T PF02254_consen   75 ENLLIALLARELNPD-IRIIAR   95 (116)
T ss_dssp             HHHHHHHHHHHHTTT-SEEEEE
T ss_pred             HHHHHHHHHHHHCCC-CeEEEE
Confidence            2222   23334454 555544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.56  E-value=0.097  Score=40.98  Aligned_cols=95  Identities=22%  Similarity=0.258  Sum_probs=55.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh-------------------HH----HHHHhcC-CcEEEcCCCCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-------------------KF----EIGKRFG-VTEFVNSKNCG  195 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~-------------------~~----~~~~~~g-~~~vi~~~~~~  195 (326)
                      ..+|+|.|+|++|..++..+-..|.+++..++.+.=                   |.    +.++++. ..++.....  
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~--   79 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE--   79 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES--
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec--
Confidence            468999999999999999999999988888885321                   11    1222332 222222221  


Q ss_pred             CccH-HHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEE
Q 020435          196 DKSV-SQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       196 ~~~~-~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  240 (326)
                        .+ .+.+.++. .++|+||+|..+...-..+.+.+... +.-+.
T Consensus        80 --~~~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~~~~~~~-~~p~i  121 (135)
T PF00899_consen   80 --KIDEENIEELL-KDYDIVIDCVDSLAARLLLNEICREY-GIPFI  121 (135)
T ss_dssp             --HCSHHHHHHHH-HTSSEEEEESSSHHHHHHHHHHHHHT-T-EEE
T ss_pred             --ccccccccccc-cCCCEEEEecCCHHHHHHHHHHHHHc-CCCEE
Confidence              11 12222222 26899999999877444555555554 44333

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=95.55  E-value=0.13  Score=43.80  Aligned_cols=102  Identities=22%  Similarity=0.276  Sum_probs=62.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEEE------cC-CCCCCcc-HHHHHHHhc-
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFV------NS-KNCGDKS-VSQIIIDMT-  207 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi------~~-~~~~~~~-~~~~i~~~~-  207 (326)
                      .++.+||+.|+|. |.-++.||. .|. .|++++.|+...+.+. +.+.....      .. .. ..-+ ....+.++. 
T Consensus        33 ~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        33 PAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRA-GNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeec-CceEEEEccCCCCCc
Confidence            5678999999876 777777775 698 9999999999888752 23321000      00 00 0000 000011111 


Q ss_pred             --CCCccEEEEcCCc--------HHHHHHHHHHhhcCCcEEEEeccC
Q 020435          208 --DGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       208 --~~g~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                        .+.+|.|+|+..-        ...++.+.++|+++ |++++....
T Consensus       109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~~  154 (213)
T TIGR03840       109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITLD  154 (213)
T ss_pred             ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEEE
Confidence              1268999997542        22477899999998 987777653

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.55  E-value=0.064  Score=46.43  Aligned_cols=83  Identities=19%  Similarity=0.224  Sum_probs=52.5

Q ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc--EEE--cCCCCCCccHHHHHHHhc
Q 020435          137 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT--EFV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       137 ~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~--~vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      ..++.++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+    ++.+..  +++  +.+.....++.+.+..+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            447889999987 9999999998888899 999999987765433    233321  222  221101123333333332


Q ss_pred             C--CCccEEEEcCCc
Q 020435          208 D--GGADYCFECVGL  220 (326)
Q Consensus       208 ~--~g~d~v~d~~g~  220 (326)
                      .  +.+|.++.+++.
T Consensus        88 ~~~~~id~vi~~Ag~  102 (247)
T PRK08945         88 EQFGRLDGVLHNAGL  102 (247)
T ss_pred             HHhCCCCEEEECCcc
Confidence            2  279999988763

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=95.54  E-value=0.057  Score=43.18  Aligned_cols=98  Identities=18%  Similarity=0.244  Sum_probs=63.7

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCC---CCCccHHHHHHHhcCC-CccEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN---CGDKSVSQIIIDMTDG-GADYC  214 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~~~~i~~~~~~-g~d~v  214 (326)
                      ..+|+|+|+ |++|.++++.-|+.+. -|..++.++....     ....+++.++   .+.+...+.+.+...+ ++|.|
T Consensus         3 agrVivYGGkGALGSacv~~Fkanny-wV~siDl~eNe~A-----d~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav   76 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFKANNY-WVLSIDLSENEQA-----DSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAV   76 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHHhcCe-EEEEEeecccccc-----cceEEecCCcchhHHHHHHHHHHHHhhcccccceE
Confidence            358999987 9999999999999998 8888886654432     2223443322   0112334444555566 99999


Q ss_pred             EEcCCcH--------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          215 FECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       215 ~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      |+..|+=                          .....+-..|+++ |-+-+.|..
T Consensus        77 ~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~G-GLL~LtGAk  131 (236)
T KOG4022|consen   77 FCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPG-GLLQLTGAK  131 (236)
T ss_pred             EEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCC-ceeeecccc
Confidence            9977750                          0122334578897 888887753

>PRK06484 short chain dehydrogenase; Validated

Probab=95.53  E-value=0.07  Score=51.80  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=54.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcE---EEcCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE---FVNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      ++.++||+|+ +++|.++++.+...|+ +|+.++++.++.+.+ ++++...   ..|..+  .+++.+.+.+...  +++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSD--EAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            5789999987 8999999999999999 999999988876654 4455322   223222  2333333333322  379


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |+++++.|.
T Consensus        81 D~li~nag~   89 (520)
T PRK06484         81 DVLVNNAGV   89 (520)
T ss_pred             CEEEECCCc
Confidence            999998764

>PRK06849 hypothetical protein; Provisional

Probab=95.53  E-value=0.88  Score=42.48  Aligned_cols=95  Identities=15%  Similarity=0.062  Sum_probs=60.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~  215 (326)
                      ...+|||+|+ .+.|+.+++.++..|. +|++++..+.......+ ...-..+.........+.+.+.++... ++|+++
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vI   81 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLI   81 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence            4689999998 5789999999999999 99999987655432221 111122322221124577777777666 899999


Q ss_pred             EcCCcHHHHHHHHHHhhcC
Q 020435          216 ECVGLASLVQEAYACCRKG  234 (326)
Q Consensus       216 d~~g~~~~~~~~~~~l~~~  234 (326)
                      -+.............+.+.
T Consensus        82 P~~e~~~~~a~~~~~l~~~  100 (389)
T PRK06849         82 PTCEEVFYLSHAKEELSAY  100 (389)
T ss_pred             ECChHHHhHHhhhhhhcCC
Confidence            7766443233334455554

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=95.52  E-value=0.098  Score=45.00  Aligned_cols=81  Identities=20%  Similarity=0.216  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEEcCCCCCCccHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      ++.++||+|+ |.+|..+++.+...|. .|+...++.++.+.+ ..++.. .++..+-...+.+.+.+.+...  +++|.
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI   83 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            3679999987 9999999999888898 888888877766554 333321 2222211011223333333221  37999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      ++.+.+.
T Consensus        84 vi~~ag~   90 (245)
T PRK12936         84 LVNNAGI   90 (245)
T ss_pred             EEECCCC
Confidence            9999874

>PLN02244 tocopherol O-methyltransferase

Probab=95.52  E-value=0.074  Score=48.74  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=63.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHHhcCCC
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTDGG  210 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~g  210 (326)
                      +++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++    .+..   .++..+.   .++     ....+.
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~---~~~-----~~~~~~  186 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA---LNQ-----PFEDGQ  186 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc---ccC-----CCCCCC
Confidence            6789999998865 6667778887788 99999999987776654    2321   1221111   110     112237


Q ss_pred             ccEEEEcCCc------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          211 ADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       211 ~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ||+|+.....      ...++.+.+.|+++ |+++....
T Consensus       187 FD~V~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~~  224 (340)
T PLN02244        187 FDLVWSMESGEHMPDKRKFVQELARVAAPG-GRIIIVTW  224 (340)
T ss_pred             ccEEEECCchhccCCHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            9999853322      23577899999998 99988754

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=95.51  E-value=0.086  Score=45.68  Aligned_cols=77  Identities=22%  Similarity=0.369  Sum_probs=50.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EEE--cCCCCCCccHHHHHHHhc--CCC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMT--DGG  210 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~vi--~~~~~~~~~~~~~i~~~~--~~g  210 (326)
                      .++||+|+ |.+|..++..+...|. +|++++++.++.+.+.+    .+.. +.+  |..+  ..++.+.+.+..  .++
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   78 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK--EDEIADMIAAAAAEFGG   78 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHhcCC
Confidence            57999997 9999999999888999 99999998877655432    2221 122  2222  123333333332  127


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++|.+.+.
T Consensus        79 ~d~vi~~a~~   88 (255)
T TIGR01963        79 LDILVNNAGI   88 (255)
T ss_pred             CCEEEECCCC
Confidence            8999987764

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=95.51  E-value=0.27  Score=40.74  Aligned_cols=100  Identities=17%  Similarity=0.259  Sum_probs=64.0

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~  204 (326)
                      ++....+.++++||-.|+|. |..++.+++.....+|++++.+++..+.+++    .+..  .++..+      ...   
T Consensus        23 ~~~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d------~~~---   92 (187)
T PRK08287         23 ALSKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE------API---   92 (187)
T ss_pred             HHHhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC------chh---
Confidence            34556677889999998765 6666667776532389999999987776643    3322  222211      111   


Q ss_pred             HhcCCCccEEEEcCC---cHHHHHHHHHHhhcCCcEEEEec
Q 020435          205 DMTDGGADYCFECVG---LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                       ...+.+|+|+....   -...+..+.+.|+++ |.++...
T Consensus        93 -~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~~  131 (187)
T PRK08287         93 -ELPGKADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLTF  131 (187)
T ss_pred             -hcCcCCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEEE
Confidence             11237999985332   133467889999998 9987753

>PRK04266 fibrillarin; Provisional

Probab=95.49  E-value=0.34  Score=41.62  Aligned_cols=101  Identities=13%  Similarity=0.162  Sum_probs=62.4

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----c-CCcEEEcCCCCCCccHHHHHHHhc
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F-GVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~-g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      +...++++++||=.|+|+ |.....+++..+..+|++++.+++..+.+.+    . ++ ..+..+.   .+. .....+ 
T Consensus        66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv-~~i~~D~---~~~-~~~~~l-  138 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNI-IPILADA---RKP-ERYAHV-  138 (226)
T ss_pred             hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCc-EEEECCC---CCc-chhhhc-
Confidence            457889999999998754 4455666776653489999999987765432    2 22 2222222   110 000011 


Q ss_pred             CCCccEEEEcCCcH----HHHHHHHHHhhcCCcEEEEe
Q 020435          208 DGGADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       208 ~~g~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .+.+|+|+.....+    ..+..+.+.|+++ |+++..
T Consensus       139 ~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpG-G~lvI~  175 (226)
T PRK04266        139 VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDG-GYLLLA  175 (226)
T ss_pred             cccCCEEEECCCChhHHHHHHHHHHHhcCCC-cEEEEE
Confidence            12699999544433    2357888899998 999884

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.48  E-value=0.32  Score=42.84  Aligned_cols=102  Identities=16%  Similarity=0.213  Sum_probs=60.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh-------------------H----HHHHHhcCC-cEEEcCCCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-------------------K----FEIGKRFGV-TEFVNSKNC  194 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~-------------------~----~~~~~~~g~-~~vi~~~~~  194 (326)
                      ...+|+|.|.|++|..++..+...|.++++.++.+.-                   |    .+.++++.. ..+...+++
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~  108 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF  108 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence            4679999999999999999999999888988885421                   1    122233332 123222221


Q ss_pred             CCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          195 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       195 ~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..   .+.+.++...++|+|+||.+....-..+.+.+....-.++..+.
T Consensus       109 i~---~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gG  154 (268)
T PRK15116        109 IT---PDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGG  154 (268)
T ss_pred             cC---hhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence            01   12233333337999999999865344444444443134555543

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.48  E-value=0.097  Score=45.57  Aligned_cols=79  Identities=22%  Similarity=0.207  Sum_probs=49.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh-hHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~-~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      .+.+++|+|+ |.+|..+++.+...|+ +|+.+.+.. +..+.++..+...+ .|..+  .++..+.+.+...  +++|+
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGN--RDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            3679999987 9999999999988998 888775443 33444444343211 23222  1233333333322  37999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +|.|.|.
T Consensus        83 li~~ag~   89 (255)
T PRK06463         83 LVNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998874

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.47  E-value=0.29  Score=42.23  Aligned_cols=102  Identities=23%  Similarity=0.207  Sum_probs=60.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh-hHH----HHHHhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKF----EIGKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~-~~~----~~~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|+.+.++. +..    +.++..+.. +.+  |..+  ..++.+.+.++..  
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST--REGCETLAKATIDRY   82 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC--HHHHHHHHHHHHHHc
Confidence            579999987 8999999998888998 777766432 222    122333322 222  2222  1222222333222  


Q ss_pred             CCccEEEEcCCc----------H---------------HHHHHHHHHhhcCCcEEEEeccCC
Q 020435          209 GGADYCFECVGL----------A---------------SLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       209 ~g~d~v~d~~g~----------~---------------~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      +++|++|.++|.          .               ...+.+...++.. |+++.++...
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~  143 (252)
T PRK06077         83 GVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVA  143 (252)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchh
Confidence            379999998873          0               0133445566676 8999987643

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=95.46  E-value=0.14  Score=42.45  Aligned_cols=92  Identities=15%  Similarity=0.178  Sum_probs=57.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcE--EEcCCCCCCccHHHHHHHhcCCCcc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE--FVNSKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~--vi~~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      ++++||-.|+|. |..++.+++.....+|++++.+++..+.++    +.+.+.  ++..      +..+ +  ...+.+|
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~------d~~~-~--~~~~~fD  111 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG------RAED-F--QHEEQFD  111 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec------chhh-c--cccCCcc
Confidence            378999998754 555555565543338999999998766554    344332  2222      2221 1  1123899


Q ss_pred             EEEEcC-Cc-HHHHHHHHHHhhcCCcEEEEe
Q 020435          213 YCFECV-GL-ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       213 ~v~d~~-g~-~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +|+... .. +..++.+.+.|+++ |.++..
T Consensus       112 ~I~s~~~~~~~~~~~~~~~~Lkpg-G~lvi~  141 (181)
T TIGR00138       112 VITSRALASLNVLLELTLNLLKVG-GYFLAY  141 (181)
T ss_pred             EEEehhhhCHHHHHHHHHHhcCCC-CEEEEE
Confidence            998432 22 33466778899998 999876

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.44  E-value=0.13  Score=47.17  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ...+|+|+|+|++|..+++.+...|.+++..++.+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35789999999999999999999999899999875

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.43  E-value=0.091  Score=52.50  Aligned_cols=77  Identities=25%  Similarity=0.254  Sum_probs=55.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh---------------------HHHHHHhcCCcEEEcCCCCCCc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNSKNCGDK  197 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~---------------------~~~~~~~~g~~~vi~~~~~~~~  197 (326)
                      .+++|+|+|+|+.|+.+++.++..|. +|++.++.+.                     ..++++++|++..++..-..+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            48999999999999999999999999 8988886652                     4456677888765554320111


Q ss_pred             cHHHHHHHhcCCCccEEEEcCCcH
Q 020435          198 SVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       198 ~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      .+. .+.    .++|.||.+.|..
T Consensus       388 ~~~-~l~----~~~DaV~latGa~  406 (639)
T PRK12809        388 TFS-DLT----SEYDAVFIGVGTY  406 (639)
T ss_pred             CHH-HHH----hcCCEEEEeCCCC
Confidence            222 121    2799999999864

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.42  E-value=0.14  Score=43.50  Aligned_cols=35  Identities=26%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ...+|+|.|+|++|..+++.+...|.++++.++.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45689999999999999999999999889998876

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.41  E-value=0.12  Score=45.84  Aligned_cols=76  Identities=22%  Similarity=0.343  Sum_probs=48.4

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhc-CCCcc
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMT-DGGAD  212 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~-~~g~d  212 (326)
                      .+++|+|+|++|..+++.+. .|. +|+.+++++++.+.+    +..+.+ +.+  |..+  .+++.+.+.+.. -+++|
T Consensus         3 k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          3 EVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS--RESVKALAATAQTLGPVT   78 (275)
T ss_pred             CEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHhcCCCC
Confidence            57888898999999998885 798 999999987765433    223322 222  3222  123333333321 13899


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      ++++++|.
T Consensus        79 ~li~nAG~   86 (275)
T PRK06940         79 GLVHTAGV   86 (275)
T ss_pred             EEEECCCc
Confidence            99999884

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.41  E-value=0.15  Score=44.18  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=30.2

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ..+|+|.|+|++|..+++.+...|.++++.++.+
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4799999999999999999999999888888754

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.40  E-value=0.3  Score=41.89  Aligned_cols=101  Identities=20%  Similarity=0.222  Sum_probs=62.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh------hHH-----------------HHHHhcCC-cEEEcCCCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS------EKF-----------------EIGKRFGV-TEFVNSKNC  194 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~------~~~-----------------~~~~~~g~-~~vi~~~~~  194 (326)
                      +..+|+|.|.|++|..++..+-..|.+++..++.+.      .++                 ++++.... .+|-..++ 
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~-  107 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND-  107 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh-
Confidence            467999999999999999999999998888887533      111                 11122221 22322222 


Q ss_pred             CCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHH-HhhcCCcEEEEecc
Q 020435          195 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYA-CCRKGWGKTIVLGV  243 (326)
Q Consensus       195 ~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~-~l~~~~G~~v~~g~  243 (326)
                        .=..+.+.++...++|+|+||..+-..--.++. |.+.. -.+|..+.
T Consensus       108 --f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k-i~vIss~G  154 (263)
T COG1179         108 --FITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK-IPVISSMG  154 (263)
T ss_pred             --hhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC-CCEEeecc
Confidence              111334555666699999999998774334444 45554 55565554

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.39  E-value=0.062  Score=45.29  Aligned_cols=35  Identities=37%  Similarity=0.441  Sum_probs=31.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ...+|+|.|+|++|..+++.+...|.++++.++.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999999999998789999876

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.37  E-value=0.093  Score=45.93  Aligned_cols=78  Identities=17%  Similarity=0.285  Sum_probs=48.1

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCCh---hHHHHH-Hhc-CCc-EE--EcCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS---EKFEIG-KRF-GVT-EF--VNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~---~~~~~~-~~~-g~~-~v--i~~~~~~~~~~~~~i~~~~  207 (326)
                      .+.++||+|+   +++|.++++.+...|+ +|+.+.++.   ++.+.+ .++ +.. ..  .|..+  .++..+.+.+..
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~   82 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS--DEEITACFETIK   82 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC--HHHHHHHHHHHH
Confidence            4689999986   5999999999888999 898887643   333333 223 211 12  23222  233333344333


Q ss_pred             C--CCccEEEEcCC
Q 020435          208 D--GGADYCFECVG  219 (326)
Q Consensus       208 ~--~g~d~v~d~~g  219 (326)
                      .  +++|++++++|
T Consensus        83 ~~~g~ld~lv~nag   96 (257)
T PRK08594         83 EEVGVIHGVAHCIA   96 (257)
T ss_pred             HhCCCccEEEECcc
Confidence            2  37999998876

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=95.34  E-value=0.33  Score=40.87  Aligned_cols=98  Identities=15%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhcCC-CccE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADY  213 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~  213 (326)
                      ++++||-+|+|. |..+..+++.....+|++++.+++..+.+++    .+...+- ...   .+..+.+...... .+|.
T Consensus        40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~-~~~---~d~~~~l~~~~~~~~~D~  114 (202)
T PRK00121         40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLR-LLC---GDAVEVLLDMFPDGSLDR  114 (202)
T ss_pred             CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEE-EEe---cCHHHHHHHHcCccccce
Confidence            578899999876 7777777776543389999999998887653    2322221 111   2332334333333 7999


Q ss_pred             EEEcCC--------------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          214 CFECVG--------------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       214 v~d~~g--------------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      |+-...              ....++.+.+.|+++ |.++...
T Consensus       115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~  156 (202)
T PRK00121        115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFAT  156 (202)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEc
Confidence            975332              234588899999998 9998764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.33  E-value=0.18  Score=43.36  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=29.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      ..+|+|.|+|++|..++..+...|.++++.++.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~   53 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD   53 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            579999999999999999999999988888864

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.31  E-value=0.14  Score=45.27  Aligned_cols=92  Identities=16%  Similarity=0.109  Sum_probs=59.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-Hhc---CCcEEEcCCCCCCccHHHHHHHhcCCCccE
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF---GVTEFVNSKNCGDKSVSQIIIDMTDGGADY  213 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~---g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~  213 (326)
                      ..+.+++|+|+|++|.+++..+...|. +|+++.+++++.+.+ +.+   +....+..+        +    .....+|+
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~--------~----~~~~~~Di  181 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFSMD--------E----LPLHRVDL  181 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEechh--------h----hcccCccE
Confidence            457899999999999999988888898 899999988776544 333   221222111        1    11126899


Q ss_pred             EEEcCCcHHH--H---HHHHHHhhcCCcEEEEecc
Q 020435          214 CFECVGLASL--V---QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       214 v~d~~g~~~~--~---~~~~~~l~~~~G~~v~~g~  243 (326)
                      |++|.+....  .   ......++++ ..++.+..
T Consensus       182 vInatp~gm~~~~~~~~~~~~~l~~~-~~v~D~~y  215 (270)
T TIGR00507       182 IINATSAGMSGNIDEPPVPAEKLKEG-MVVYDMVY  215 (270)
T ss_pred             EEECCCCCCCCCCCCCCCCHHHcCCC-CEEEEecc
Confidence            9999886420  1   1123457776 67776644

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08219 short chain dehydrogenase; Provisional

Probab=95.31  E-value=0.086  Score=44.79  Aligned_cols=74  Identities=15%  Similarity=0.104  Sum_probs=48.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCC--CccEEEE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDG--GADYCFE  216 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~--g~d~v~d  216 (326)
                      .++||+|+ |.+|..++..+... . +|++++++.++.+.+.+ ...-+++..+-   .+ .+.+.+...+  ++|.+|.
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~---~~-~~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDL---TD-PEAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCC---CC-HHHHHHHHHhcCCCCEEEE
Confidence            58999987 99999888877666 6 89999998877665543 22122332222   11 2233333333  7999999


Q ss_pred             cCCc
Q 020435          217 CVGL  220 (326)
Q Consensus       217 ~~g~  220 (326)
                      +.+.
T Consensus        78 ~ag~   81 (227)
T PRK08219         78 NAGV   81 (227)
T ss_pred             CCCc
Confidence            8874

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.30  E-value=0.13  Score=45.12  Aligned_cols=79  Identities=23%  Similarity=0.384  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ +.+|..++..+...|+ +|+.+.+++++.+.+    +..+.. ..+  |..+  ..+..+.+.+...  
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   85 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD--EDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHhC
Confidence            4678999987 8999999988888999 899999888765543    233432 222  2222  1223333333222  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|+++++.|.
T Consensus        86 ~~id~li~~ag~   97 (265)
T PRK07097         86 GVIDILVNNAGI   97 (265)
T ss_pred             CCCCEEEECCCC
Confidence            279999998874

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.29  E-value=0.11  Score=46.37  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .+.+++|+|+|++|.+++..+...|+.+|+++.++.
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            467899999999999999888889986699999985

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.29  E-value=0.18  Score=43.24  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=50.5

Q ss_pred             EEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH--HHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          143 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       143 vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~--~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      |+|+|+ |.+|..+++.+...+. +|.++.|+..+  .+.++..|++.+ ..+-    +-.+.+.+... |+|.||.+.+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~----~~~~~l~~al~-g~d~v~~~~~   73 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV-EADY----DDPESLVAALK-GVDAVFSVTP   73 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE-ES-T----T-HHHHHHHHT-TCSEEEEESS
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe-eccc----CCHHHHHHHHc-CCceEEeecC
Confidence            789997 9999999999988887 89999988643  455677888544 3222    12334444433 8999998888

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.28  E-value=0.1  Score=45.72  Aligned_cols=79  Identities=20%  Similarity=0.341  Sum_probs=48.3

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCC---hhHHHHH-HhcCCcEEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG-KRFGVTEFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~---~~~~~~~-~~~g~~~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+   +++|.++++.+...|+ +|+.+.+.   +++.+.+ ++++....+  |..+  .++..+.+.+... 
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~   81 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVAS--DEQIDALFASLGQH   81 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCC--HHHHHHHHHHHHHH
Confidence            4689999984   5899999998888999 88887543   2333332 334432222  2222  2333334443332 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        82 ~g~iD~lvnnAG~   94 (260)
T PRK06997         82 WDGLDGLVHSIGF   94 (260)
T ss_pred             hCCCcEEEEcccc
Confidence             389999988763

>PRK06523 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.087  Score=45.95  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=47.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcC--CCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g~d~v  214 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|++++++.+...   .-... ...|..+  .++..+.+.++..  +++|++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~---~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~v   81 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDDL---PEGVEFVAADLTT--AEGCAAVARAVLERLGGVDIL   81 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhhc---CCceeEEecCCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4789999987 8999999999988999 8999998755321   11111 1112222  1222222222221  379999


Q ss_pred             EEcCC
Q 020435          215 FECVG  219 (326)
Q Consensus       215 ~d~~g  219 (326)
                      ++++|
T Consensus        82 i~~ag   86 (260)
T PRK06523         82 VHVLG   86 (260)
T ss_pred             EECCc
Confidence            99887

>PRK08303 short chain dehydrogenase; Provisional

Probab=95.27  E-value=0.13  Score=46.44  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=30.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|+.++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            4689999987 8999999999999999 89999886

>PRK07791 short chain dehydrogenase; Provisional

Probab=95.27  E-value=0.14  Score=45.68  Aligned_cols=79  Identities=22%  Similarity=0.231  Sum_probs=49.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh---------hHHHH----HHhcCCc-EEE--cCCCCCCccHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS---------EKFEI----GKRFGVT-EFV--NSKNCGDKSVSQ  201 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~---------~~~~~----~~~~g~~-~vi--~~~~~~~~~~~~  201 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|+.++++.         ++.+.    ++..+.. ..+  |..+  .++..+
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~v~~   81 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD--WDGAAN   81 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC--HHHHHH
Confidence            5789999987 8999999998888999 888887654         33322    2223322 122  2222  223333


Q ss_pred             HHHHhcC--CCccEEEEcCCc
Q 020435          202 IIIDMTD--GGADYCFECVGL  220 (326)
Q Consensus       202 ~i~~~~~--~g~d~v~d~~g~  220 (326)
                      .+.+...  +++|++++++|.
T Consensus        82 ~~~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         82 LVDAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHHHhcCCCCEEEECCCC
Confidence            3333322  389999998874

>PRK12743 oxidoreductase; Provisional

Probab=95.26  E-value=0.13  Score=44.76  Aligned_cols=78  Identities=18%  Similarity=0.065  Sum_probs=47.7

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHH----HHhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~----~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|+.+.+ +.++.+.    ++..+.. +.+  |..+  ..+..+.+.+...  
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   78 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSD--LPEGAQALDKLIQRL   78 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            468999987 8999999999999999 8887754 4443332    2334432 232  2222  1222222333221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|.+.|.
T Consensus        79 ~~id~li~~ag~   90 (256)
T PRK12743         79 GRIDVLVNNAGA   90 (256)
T ss_pred             CCCCEEEECCCC
Confidence            279999998874

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.25  E-value=0.057  Score=43.01  Aligned_cols=96  Identities=19%  Similarity=0.137  Sum_probs=56.3

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCC--CC-ccHHHHHHHhcCCCccEEEEcCC
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC--GD-KSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~--~~-~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      |+|+|+|++|.+.+..++..|. +|..+.+.+ ..+.+++.|........+.  .. ......  ....+.+|+||-|+-
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP--SADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE-SS
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc--hhccCCCcEEEEEec
Confidence            6899999999998888888998 999999888 7776765543111110000  00 000000  111138999999887


Q ss_pred             cHH---HHHHHHHHhhcCCcEEEEecc
Q 020435          220 LAS---LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       220 ~~~---~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ...   .++.+...+.++ ..++.+.+
T Consensus        77 a~~~~~~l~~l~~~~~~~-t~iv~~qN  102 (151)
T PF02558_consen   77 AYQLEQALQSLKPYLDPN-TTIVSLQN  102 (151)
T ss_dssp             GGGHHHHHHHHCTGEETT-EEEEEESS
T ss_pred             ccchHHHHHHHhhccCCC-cEEEEEeC
Confidence            655   233334444554 56666644

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05650 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.12  Score=45.42  Aligned_cols=78  Identities=22%  Similarity=0.219  Sum_probs=48.8

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcE-EEcCCCCCCccHHHHHHHhcC--CCccE
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      ++||+|+ |.+|..+++.+...|. +|+.++++.++.+.+    +..+.+. ++..+-.+..++.+.+.+...  +++|+
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~   80 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV   80 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            6899987 9999999998888899 899999888765532    2233222 221111011222222322221  37999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +|++.|.
T Consensus        81 lI~~ag~   87 (270)
T PRK05650         81 IVNNAGV   87 (270)
T ss_pred             EEECCCC
Confidence            9998874

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=95.24  E-value=0.099  Score=46.07  Aligned_cols=104  Identities=16%  Similarity=0.249  Sum_probs=67.4

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC--cEEEcCCCCCCccHHHHHHHhcC
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      +....++.++.+||=+|+|. |..+..+++..++ +|++++.+++..+.+++...  ..+ ....   .++.+  ....+
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i-~~~~---~D~~~--~~~~~  115 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKI-EFEA---NDILK--KDFPE  115 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCce-EEEE---CCccc--CCCCC
Confidence            55667888999999998764 5556667777787 99999999988887765321  111 1101   11110  01112


Q ss_pred             CCccEEEE--cC---C---cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          209 GGADYCFE--CV---G---LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       209 ~g~d~v~d--~~---g---~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.+|+|+.  +.   +   -...++.+.+.|+|+ |.++....
T Consensus       116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG-G~lvi~d~  157 (263)
T PTZ00098        116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN-GILLITDY  157 (263)
T ss_pred             CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            37999985  21   1   134577889999998 99998764

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=95.24  E-value=0.11  Score=39.19  Aligned_cols=93  Identities=25%  Similarity=0.335  Sum_probs=57.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC---cEEEcCCCCCCccHHHHHHHhcCCCcc
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV---TEFVNSKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~---~~vi~~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      |.+||-.|+|. |..++.+++.... ++++++.++...+.++.    .+.   ..++.      .++.+.......+.+|
T Consensus         1 g~~vlD~~~G~-G~~~~~~~~~~~~-~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~------~D~~~~~~~~~~~~~D   72 (117)
T PF13659_consen    1 GDRVLDPGCGS-GTFLLAALRRGAA-RVTGVDIDPEAVELARRNLPRNGLDDRVEVIV------GDARDLPEPLPDGKFD   72 (117)
T ss_dssp             TEEEEEETSTT-CHHHHHHHHHCTC-EEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE------SHHHHHHHTCTTT-EE
T ss_pred             CCEEEEcCcch-HHHHHHHHHHCCC-eEEEEEECHHHHHHHHHHHHHccCCceEEEEE------CchhhchhhccCceeE
Confidence            56788886543 4444444544435 99999999998887764    232   12322      3444433334344999


Q ss_pred             EEEE-cCCc-------------HHHHHHHHHHhhcCCcEEEEe
Q 020435          213 YCFE-CVGL-------------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       213 ~v~d-~~g~-------------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +|+- ..-.             ..++..+.+.|+++ |.++.+
T Consensus        73 ~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g-G~~~~~  114 (117)
T PF13659_consen   73 LIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG-GVLVFI  114 (117)
T ss_dssp             EEEE--STTSBTT----GGCHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEECCCCccccccchhhHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence            9984 2222             23577899999998 998876

...

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.23  E-value=0.18  Score=46.10  Aligned_cols=88  Identities=23%  Similarity=0.298  Sum_probs=57.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.+++.+... ....+...         .++.+.+.     ..|+|+-+.
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~-~~~~~~~~---------~~l~ell~-----~aDiV~l~l  212 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPEA-EKELGAEY---------RPLEELLR-----ESDFVSLHV  212 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCChhh-HHHcCCEe---------cCHHHHHh-----hCCEEEEeC
Confidence            47899999999999999999999999 9999998754432 22333311         12222222     367777666


Q ss_pred             CcHH-----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 GLAS-----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~~-----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ....     .-...+..++++ ..+|.++.
T Consensus       213 P~t~~T~~~i~~~~~~~mk~g-a~lIN~aR  241 (333)
T PRK13243        213 PLTKETYHMINEERLKLMKPT-AILVNTAR  241 (333)
T ss_pred             CCChHHhhccCHHHHhcCCCC-eEEEECcC
Confidence            5322     113456677776 66666654

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.20  E-value=0.14  Score=46.25  Aligned_cols=88  Identities=17%  Similarity=0.187  Sum_probs=57.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+.+|.|+|.|.||..+++.++.+|. +|++.+++.++.+     +.+.+..  .   .++.+.+.     ..|+|+.+.
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~-----~~~~~~~--~---~~l~e~l~-----~aDvvv~~l  198 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWP-----GVQSFAG--R---EELSAFLS-----QTRVLINLL  198 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCC-----Cceeecc--c---ccHHHHHh-----cCCEEEECC
Confidence            57899999999999999999999999 9999987654321     2211111  1   12322222     478887766


Q ss_pred             CcHHH-----HHHHHHHhhcCCcEEEEecc
Q 020435          219 GLASL-----VQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~~~-----~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .....     -...+..++++ ..+|.++.
T Consensus       199 Plt~~T~~li~~~~l~~mk~g-a~lIN~aR  227 (312)
T PRK15469        199 PNTPETVGIINQQLLEQLPDG-AYLLNLAR  227 (312)
T ss_pred             CCCHHHHHHhHHHHHhcCCCC-cEEEECCC
Confidence            64321     22456778887 77777764

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.20  E-value=0.18  Score=43.99  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=30.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ...+|+|.|+|++|..+++.+...|.++++.++.+
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35799999999999999999999999888888753

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=95.20  E-value=0.22  Score=43.42  Aligned_cols=103  Identities=16%  Similarity=0.237  Sum_probs=66.8

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHHhc
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ...+.....+||-+|.+ +|+.++.+|+.++. .+|+.++.+++..+.++    +.|..+-|....   .+..+.+.++.
T Consensus        73 ~l~~~~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~---G~a~e~L~~l~  148 (247)
T PLN02589         73 MLLKLINAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE---GPALPVLDQMI  148 (247)
T ss_pred             HHHHHhCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe---ccHHHHHHHHH
Confidence            33455567799999863 47777788887632 28999999988777664    355333333222   44555555543


Q ss_pred             -----CCCccEEE-EcCCcH--HHHHHHHHHhhcCCcEEEE
Q 020435          208 -----DGGADYCF-ECVGLA--SLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       208 -----~~g~d~v~-d~~g~~--~~~~~~~~~l~~~~G~~v~  240 (326)
                           .+.+|.|| |+--..  ..+..+++.|+++ |.++.
T Consensus       149 ~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G-Gviv~  188 (247)
T PLN02589        149 EDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVG-GVIGY  188 (247)
T ss_pred             hccccCCcccEEEecCCHHHhHHHHHHHHHhcCCC-eEEEE
Confidence                 14899998 655443  2367888999997 77554

>PRK07775 short chain dehydrogenase; Provisional

Probab=95.19  E-value=0.13  Score=45.31  Aligned_cols=80  Identities=18%  Similarity=0.059  Sum_probs=49.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhc--CCCc
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMT--DGGA  211 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~--~~g~  211 (326)
                      ..++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+    +..+.. +.+..+-.+.+++.+.+.+..  -+++
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEI   88 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            458999987 9999999998888999 899998877654432    223332 222222101122333333321  1378


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++|.+++.
T Consensus        89 d~vi~~Ag~   97 (274)
T PRK07775         89 EVLVSGAGD   97 (274)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK12747 short chain dehydrogenase; Provisional

Probab=95.19  E-value=0.51  Score=40.85  Aligned_cols=38  Identities=24%  Similarity=0.168  Sum_probs=30.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEc-CChhHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKF  177 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~-~~~~~~  177 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+.+. +..++.
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~   42 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEA   42 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHH
Confidence            4679999987 8999999999999999 787764 444443

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.18  E-value=0.23  Score=46.16  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ...+|+|+|+|++|..++..+...|.++++.++.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46789999999999999999999999889999876

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.16  E-value=0.087  Score=45.93  Aligned_cols=96  Identities=14%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC----C------cEEEcCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----V------TEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g----~------~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      +.++|||+|.|. |..+-.++++....+|.+++.+++-.+.++++-    .      -+++..      +-.+.+++...
T Consensus        76 ~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~------Dg~~~l~~~~~  148 (246)
T PF01564_consen   76 NPKRVLIIGGGD-GGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIG------DGRKFLKETQE  148 (246)
T ss_dssp             ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEES------THHHHHHTSSS
T ss_pred             CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEh------hhHHHHHhccC
Confidence            688999998655 555667777775558999999988888776631    1      133332      23334444332


Q ss_pred             CCccEEE-EcCC---------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          209 GGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       209 ~g~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +.+|+|+ |...         +.+.++.+.+.|+++ |.++.-.
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~-Gv~v~~~  191 (246)
T PF01564_consen  149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD-GVLVLQA  191 (246)
T ss_dssp             T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC-cEEEEEc
Confidence            2899998 6554         346788999999998 9998765

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.16  E-value=0.33  Score=42.47  Aligned_cols=94  Identities=22%  Similarity=0.267  Sum_probs=61.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHHhcCCC
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTDGG  210 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~g  210 (326)
                      .++.+||-.|+|. |..+..+++. |. +|++++.+++..+.+++    .|..   .++..      +.. .+.....+.
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~------d~~-~l~~~~~~~  112 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC------AAQ-DIAQHLETP  112 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEc------CHH-HHhhhcCCC
Confidence            4567999988766 6777777765 76 89999999998887764    2321   22221      111 222222348


Q ss_pred             ccEEEEcC-----Cc-HHHHHHHHHHhhcCCcEEEEec
Q 020435          211 ADYCFECV-----GL-ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       211 ~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +|+|+...     .. ...+..+.+.|+++ |.++.+-
T Consensus       113 fD~V~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  149 (255)
T PRK11036        113 VDLILFHAVLEWVADPKSVLQTLWSVLRPG-GALSLMF  149 (255)
T ss_pred             CCEEEehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence            99998432     22 23477889999998 9997653

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.15  E-value=0.27  Score=44.66  Aligned_cols=88  Identities=24%  Similarity=0.294  Sum_probs=62.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEE-Ec
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF-EC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~-d~  217 (326)
                      .|.++-|+|.|.||++.++.++..|. +|+..++++. .+..+..++..+         ++.+.+.     ..|++. .|
T Consensus       145 ~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~-~~~~~~~~~~y~---------~l~ell~-----~sDii~l~~  208 (324)
T COG1052         145 RGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN-PEAEKELGARYV---------DLDELLA-----ESDIISLHC  208 (324)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC-hHHHhhcCceec---------cHHHHHH-----hCCEEEEeC
Confidence            48899999999999999999999999 9999998876 333344444332         1233332     378875 66


Q ss_pred             CCcHHHH----HHHHHHhhcCCcEEEEecc
Q 020435          218 VGLASLV----QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       218 ~g~~~~~----~~~~~~l~~~~G~~v~~g~  243 (326)
                      ...+.+.    ...+..++++ ..+|-++.
T Consensus       209 Plt~~T~hLin~~~l~~mk~g-a~lVNtaR  237 (324)
T COG1052         209 PLTPETRHLINAEELAKMKPG-AILVNTAR  237 (324)
T ss_pred             CCChHHhhhcCHHHHHhCCCC-eEEEECCC
Confidence            6665522    2567788887 88887764

>PRK07102 short chain dehydrogenase; Provisional

Probab=95.15  E-value=0.17  Score=43.55  Aligned_cols=38  Identities=26%  Similarity=0.294  Sum_probs=33.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  179 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~  179 (326)
                      .+++|+|+ |.+|..+++.+...|. +|+++++++++.+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~   40 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLER   40 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHH
Confidence            47999987 9999999999988898 99999998876654

>PLN03075 nicotianamine synthase; Provisional

Probab=95.15  E-value=0.17  Score=45.10  Aligned_cols=97  Identities=13%  Similarity=0.129  Sum_probs=63.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHhcC-----CcEEEcCCCCCCccHHHHHHHhcCCCcc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFG-----VTEFVNSKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~~g-----~~~vi~~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      .+++|+-+|+|+.++.++.+++.. ...+++.++.+++..+.+++.-     ...-+....   .+..+...  ..+++|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~---~Da~~~~~--~l~~FD  197 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT---ADVMDVTE--SLKEYD  197 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE---Cchhhccc--ccCCcC
Confidence            789999999999888888888654 3338999999999988877532     111111111   22222110  113899


Q ss_pred             EEEEcC-------CcHHHHHHHHHHhhcCCcEEEEe
Q 020435          213 YCFECV-------GLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       213 ~v~d~~-------g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +||-.+       .-...+....+.|+++ |.+++=
T Consensus       198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lvlr  232 (296)
T PLN03075        198 VVFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLMLR  232 (296)
T ss_pred             EEEEecccccccccHHHHHHHHHHhcCCC-cEEEEe
Confidence            998544       2244578899999997 777654

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=95.13  E-value=0.36  Score=42.47  Aligned_cols=103  Identities=18%  Similarity=0.270  Sum_probs=66.3

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHhc-C------Cc--EEEcCCCCCCccHHHH
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF-G------VT--EFVNSKNCGDKSVSQI  202 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~~-g------~~--~vi~~~~~~~~~~~~~  202 (326)
                      +...+.++++||-.|+|. |..+..+++..+. .+|++++.+++..+.+++. .      .+  .++..+.   .++   
T Consensus        67 ~~~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~---~~l---  139 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA---TDL---  139 (261)
T ss_pred             HHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc---ccC---
Confidence            345677899999998865 5566777776652 2899999999988877532 1      11  1221111   110   


Q ss_pred             HHHhcCCCccEEEEcCC------cHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          203 IIDMTDGGADYCFECVG------LASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       203 i~~~~~~g~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                        ...++.+|.|+-...      -...++++.+.|+|+ |+++......
T Consensus       140 --p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG-G~l~i~d~~~  185 (261)
T PLN02233        140 --PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG-SRVSILDFNK  185 (261)
T ss_pred             --CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC-cEEEEEECCC
Confidence              111227999975332      234578999999998 9998886543

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.12  E-value=0.15  Score=43.78  Aligned_cols=79  Identities=25%  Similarity=0.297  Sum_probs=47.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-HHH----HHhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEI----GKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-~~~----~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++.++.++ .+.    ++..+.. ..+  |..+  .+++.+.+.+... 
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   80 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSD--AESVERAVDEAKAE   80 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            3568999987 9999999999998999 78777665442 221    2223322 222  2222  2223333333322 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|.++.+.+.
T Consensus        81 ~~~id~vi~~ag~   93 (248)
T PRK05557         81 FGGVDILVNNAGI   93 (248)
T ss_pred             cCCCCEEEECCCc
Confidence             278999998874

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=95.09  E-value=0.22  Score=44.49  Aligned_cols=70  Identities=20%  Similarity=0.175  Sum_probs=50.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      +|.|+|.|.+|..++..+...|. +|++.++++++.+.+.+.|....        .+..+.+.     ..|+||.|+...
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~~-----~aDivi~~vp~~   66 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGAVTA--------ETARQVTE-----QADVIFTMVPDS   66 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCccc--------CCHHHHHh-----cCCEEEEecCCH
Confidence            47788999999988888888898 89999999999888877665211        12222221     478888888765


Q ss_pred             HHHH
Q 020435          222 SLVQ  225 (326)
Q Consensus       222 ~~~~  225 (326)
                      ....
T Consensus        67 ~~~~   70 (291)
T TIGR01505        67 PQVE   70 (291)
T ss_pred             HHHH
Confidence            4333

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.08  E-value=0.18  Score=47.17  Aligned_cols=105  Identities=15%  Similarity=0.212  Sum_probs=61.5

Q ss_pred             ccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH-------HHHhc-CCcEE-EcCCCCCCccHHHHHHH
Q 020435          136 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-------IGKRF-GVTEF-VNSKNCGDKSVSQIIID  205 (326)
Q Consensus       136 ~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~-------~~~~~-g~~~v-i~~~~~~~~~~~~~i~~  205 (326)
                      +...+.+|||+|+ |.+|..+++.+...|. +|++++++..+.+       ..... ++..+ .|..+  .+.+.+.++.
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~  132 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD--ADSLRKVLFS  132 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC--HHHHHHHHHH
Confidence            3456789999987 9999999999988898 9999998765421       11112 23222 22222  1223323332


Q ss_pred             hcCCCccEEEEcCCcHH------------HHHHHHHHhhcC-CcEEEEeccC
Q 020435          206 MTDGGADYCFECVGLAS------------LVQEAYACCRKG-WGKTIVLGVD  244 (326)
Q Consensus       206 ~~~~g~d~v~d~~g~~~------------~~~~~~~~l~~~-~G~~v~~g~~  244 (326)
                      . +.++|+||+|.+...            ....+++.+... .+++|.++..
T Consensus       133 ~-~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~  183 (390)
T PLN02657        133 E-GDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAI  183 (390)
T ss_pred             h-CCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence            2 116999999886421            122344444433 1468877653

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.08  E-value=0.18  Score=45.33  Aligned_cols=81  Identities=21%  Similarity=0.291  Sum_probs=48.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh-hHHH----HHHhcCCcEEEcCCCCCCcc-HHHHHHHhc-CCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE----IGKRFGVTEFVNSKNCGDKS-VSQIIIDMT-DGG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~-~~~~----~~~~~g~~~vi~~~~~~~~~-~~~~i~~~~-~~g  210 (326)
                      .+.++||+|+ |++|..+++.+...|+ +|+++++.. ++.+    .++..|.......-+..+.+ ..+.+.+.. -++
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~   89 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGG   89 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            4679999987 8999999999888999 888887643 2222    23334432222111211122 222222111 248


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++|+++|.
T Consensus        90 iD~li~nAG~   99 (306)
T PRK07792         90 LDIVVNNAGI   99 (306)
T ss_pred             CCEEEECCCC
Confidence            9999998874

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.05  E-value=0.28  Score=44.65  Aligned_cols=91  Identities=18%  Similarity=0.119  Sum_probs=64.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcE-----------EEcCCCCCCccHHHHHHHhcC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-----------FVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~-----------vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      ..+|.|+|+|.+|.+.+..+...|. +|.+..+++++.+.+.+.+...           +...     .+..+.+     
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~-----~~~~e~~-----   72 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPT-----ADPEEAL-----   72 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEe-----CCHHHHH-----
Confidence            3579999999999999999888898 8999999888777665532110           1111     1222222     


Q ss_pred             CCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          209 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       209 ~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.+|+||-|+.... ....+..++++ -.++.+..
T Consensus        73 ~~aD~Vi~~v~~~~-~~~v~~~l~~~-~~vi~~~~  105 (328)
T PRK14618         73 AGADFAVVAVPSKA-LRETLAGLPRA-LGYVSCAK  105 (328)
T ss_pred             cCCCEEEEECchHH-HHHHHHhcCcC-CEEEEEee
Confidence            26899999999987 77888888886 66666654

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.02  E-value=0.19  Score=41.35  Aligned_cols=33  Identities=27%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      +|+|.|+|++|..+++.+...|.+++..++.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999889997899988765

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.02  E-value=0.16  Score=43.90  Aligned_cols=81  Identities=16%  Similarity=0.134  Sum_probs=48.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEE-EcCChhHHHH----HHhcCCc-EEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFEI----GKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~-~~~~~~~~~~----~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+. ..++.++.+.    ++..+.. ..+..+-.+.++..+.+.+...  +
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG   81 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3579999987 9999999999998998 7765 4566554433    2333432 2222221012233333333322  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++|++.|.
T Consensus        82 ~id~vi~~ag~   92 (250)
T PRK08063         82 RLDVFVNNAAS   92 (250)
T ss_pred             CCCEEEECCCC
Confidence            79999998873

>PRK08328 hypothetical protein; Provisional

Probab=95.01  E-value=0.16  Score=43.83  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      .+.+|+|.|+|++|..+++.+...|.++++.++.+
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35789999999999999999999999888888743

>TIGR00417 speE spermidine synthase

Probab=94.98  E-value=0.27  Score=43.51  Aligned_cols=96  Identities=16%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC-C---------cEEEcCCCCCCccHHHHHHHhc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-V---------TEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g-~---------~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ..+++||++|+|. |..+..+++.....++++++.+++-.+.+++.- .         -.++.      .+..+.+++ .
T Consensus        71 ~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~------~D~~~~l~~-~  142 (270)
T TIGR00417        71 PNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQI------DDGFKFLAD-T  142 (270)
T ss_pred             CCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEE------CchHHHHHh-C
Confidence            4566999998765 445556667664558999999888777766521 0         01121      122333333 2


Q ss_pred             CCCccEEE-EcC---C------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          208 DGGADYCF-ECV---G------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ~~g~d~v~-d~~---g------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+.+|+|+ |..   +      ....++.+.+.|+++ |.++...
T Consensus       143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pg-G~lv~~~  186 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNED-GIFVAQS  186 (270)
T ss_pred             CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCC-cEEEEcC
Confidence            34899998 443   1      234467889999998 9998764

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK08278 short chain dehydrogenase; Provisional

Probab=94.98  E-value=0.15  Score=44.92  Aligned_cols=79  Identities=27%  Similarity=0.333  Sum_probs=49.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-------H----HHHHhcCCc-EE--EcCCCCCCccHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------F----EIGKRFGVT-EF--VNSKNCGDKSVSQII  203 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-------~----~~~~~~g~~-~v--i~~~~~~~~~~~~~i  203 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|++++++.+.       .    +.++..+.. +.  .|..+  .+++.+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~   81 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD--EDQVAAAV   81 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHH
Confidence            4578999987 9999999999988999 89999986542       1    112233332 22  23222  22333333


Q ss_pred             HHhcC--CCccEEEEcCCc
Q 020435          204 IDMTD--GGADYCFECVGL  220 (326)
Q Consensus       204 ~~~~~--~g~d~v~d~~g~  220 (326)
                      .+...  +.+|++|+++|.
T Consensus        82 ~~~~~~~g~id~li~~ag~  100 (273)
T PRK08278         82 AKAVERFGGIDICVNNASA  100 (273)
T ss_pred             HHHHHHhCCCCEEEECCCC
Confidence            33221  279999998874

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=94.98  E-value=0.17  Score=47.40  Aligned_cols=76  Identities=17%  Similarity=0.271  Sum_probs=48.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCC-cEEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~-~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      .+++++|+|+ |++|.++++.+...|+ +|+++++++++.+... ..+. ...+..+-   .+ .+.+.+.. +++|+++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dv---sd-~~~v~~~l-~~IDiLI  250 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEINGEDLPVKTLHWQV---GQ-EAALAELL-EKVDILI  250 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCCeEEEEeeC---CC-HHHHHHHh-CCCCEEE
Confidence            4789999987 9999999998888999 9999998776654321 1111 12222111   11 22333333 3799999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      +++|.
T Consensus       251 nnAGi  255 (406)
T PRK07424        251 INHGI  255 (406)
T ss_pred             ECCCc
Confidence            88764

>PLN02928 oxidoreductase family protein

Probab=94.97  E-value=0.17  Score=46.57  Aligned_cols=96  Identities=23%  Similarity=0.370  Sum_probs=59.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC-----CcEEEcCCCCCCccHHHHHHHhcCCCccE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-----VTEFVNSKNCGDKSVSQIIIDMTDGGADY  213 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g-----~~~vi~~~~~~~~~~~~~i~~~~~~g~d~  213 (326)
                      .|.+|.|+|.|.+|..+++.++.+|+ +|++.+++..+... ..++     ...+.+... ...++.+.+.     ..|+
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~L~ell~-----~aDi  229 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKG-GHEDIYEFAG-----EADI  229 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh-hhhccccccccccccccC-cccCHHHHHh-----hCCE
Confidence            47899999999999999999999999 99999876432211 1110     001110000 0123333332     3789


Q ss_pred             EEEcCCcHH-----HHHHHHHHhhcCCcEEEEecc
Q 020435          214 CFECVGLAS-----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       214 v~d~~g~~~-----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      |+.+.....     +-...+..|+++ ..+|.++.
T Consensus       230 Vvl~lPlt~~T~~li~~~~l~~Mk~g-a~lINvaR  263 (347)
T PLN02928        230 VVLCCTLTKETAGIVNDEFLSSMKKG-ALLVNIAR  263 (347)
T ss_pred             EEECCCCChHhhcccCHHHHhcCCCC-eEEEECCC
Confidence            887665322     123667888887 87877764

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=94.97  E-value=0.098  Score=45.16  Aligned_cols=78  Identities=17%  Similarity=0.161  Sum_probs=46.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhH-HHHH---HhcCCcEE---EcCCCCCCccHHHHHHHhcC--
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEK-FEIG---KRFGVTEF---VNSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~-~~~~---~~~g~~~v---i~~~~~~~~~~~~~i~~~~~--  208 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|+.+.. +..+ .+.+   +..+....   .|..+  ..++.+.+.+...  
T Consensus         3 ~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   79 (246)
T PRK12938          3 QRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGD--WDSTKAAFDKVKAEV   79 (246)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence            578899987 9999999999999999 7777543 2222 2222   33343322   22222  1223333333221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|+++++.+.
T Consensus        80 ~~id~li~~ag~   91 (246)
T PRK12938         80 GEIDVLVNNAGI   91 (246)
T ss_pred             CCCCEEEECCCC
Confidence            389999999875

>PRK07340 ornithine cyclodeaminase; Validated

Probab=94.97  E-value=0.15  Score=45.92  Aligned_cols=102  Identities=13%  Similarity=0.041  Sum_probs=66.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHH-HhcCCc--EEEcCCCCCCccHHHHHHHhcCCCccE
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIG-KRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGADY  213 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~-~g~~~V~~~~~~~~~~~~~-~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~g~d~  213 (326)
                      ....+++|+|+|..|.+.++.+.. .+.++|.+..+++++.+.+ .++...  .+. .     .+..+.+.     ++|+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~-----~~~~~av~-----~aDi  191 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-P-----LDGEAIPE-----AVDL  191 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-E-----CCHHHHhh-----cCCE
Confidence            456799999999999998888864 6776899999998886654 334211  111 1     12333332     6999


Q ss_pred             EEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccH
Q 020435          214 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS  254 (326)
Q Consensus       214 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~  254 (326)
                      |+.|..+..-+-..+  ++++ -++..+|...+ ..-.++.
T Consensus       192 VitaT~s~~Pl~~~~--~~~g-~hi~~iGs~~p-~~~El~~  228 (304)
T PRK07340        192 VVTATTSRTPVYPEA--ARAG-RLVVAVGAFTP-DMAELAP  228 (304)
T ss_pred             EEEccCCCCceeCcc--CCCC-CEEEecCCCCC-CcccCCH
Confidence            998888755332333  7887 88888886543 2334443

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.96  E-value=0.12  Score=47.45  Aligned_cols=77  Identities=13%  Similarity=0.050  Sum_probs=49.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcC--Cc-EEEcCCCCCCccHHHHHHHhcCC-Ccc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG--VT-EFVNSKNCGDKSVSQIIIDMTDG-GAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g--~~-~vi~~~~~~~~~~~~~i~~~~~~-g~d  212 (326)
                      ++.+|||+|+ |.+|..+++.+...|. +|++++++++..... ..++  .. ..+..+-   .+ .+.+.+...+ ++|
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl---~~-~~~~~~~~~~~~~d   77 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDI---RD-AAKLRKAIAEFKPE   77 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccC---CC-HHHHHHHHhhcCCC
Confidence            4689999987 9999999999999998 899998776543221 1121  11 1121111   11 2334444444 789


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      +||++++.
T Consensus        78 ~vih~A~~   85 (349)
T TIGR02622        78 IVFHLAAQ   85 (349)
T ss_pred             EEEECCcc
Confidence            99998873

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.95  E-value=0.3  Score=41.93  Aligned_cols=75  Identities=19%  Similarity=0.235  Sum_probs=55.9

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh--cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR--FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~--~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      +++|.|+|.+|..+++.+...|. .|++++.++++.+...+  +.. +++..+.    .-.+.+++.--..+|+++-+.+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~-~~v~gd~----t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDT-HVVIGDA----TDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcce-EEEEecC----CCHHHHHhcCCCcCCEEEEeeC
Confidence            68899999999999999999998 99999999999887433  544 4544333    2233455543338999998888


Q ss_pred             cHH
Q 020435          220 LAS  222 (326)
Q Consensus       220 ~~~  222 (326)
                      ...
T Consensus        76 ~d~   78 (225)
T COG0569          76 NDE   78 (225)
T ss_pred             CCH
Confidence            855

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.95  E-value=0.2  Score=44.59  Aligned_cols=68  Identities=19%  Similarity=0.282  Sum_probs=50.0

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      +|.|+|.|.+|..++..++..|. +|++.++++++.+.+.+.|.-...   .   .+. +.+     ..+|+||-|+...
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~---~---~~~-~~~-----~~aDlVilavp~~   68 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEA---S---TDL-SLL-----KDCDLVILALPIG   68 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCcccc---c---CCH-hHh-----cCCCEEEEcCCHH
Confidence            68899999999988888888898 899999999988888777642111   1   111 111     2689999988866


Q ss_pred             H
Q 020435          222 S  222 (326)
Q Consensus       222 ~  222 (326)
                      .
T Consensus        69 ~   69 (279)
T PRK07417         69 L   69 (279)
T ss_pred             H
Confidence            5

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.92  E-value=0.17  Score=43.48  Aligned_cols=80  Identities=23%  Similarity=0.321  Sum_probs=48.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHHHH----hcCCc-EEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIGK----RFGVT-EFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~~~~~~~~----~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      +.++||+|+ |.+|..++..+...|+ +|+.+ .++.++.+.+.    ..+.. .++..+-.+.+++.+.+.+...  ++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGK   83 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            468999987 9999999988888899 88888 88776654332    22221 2222221011223232332222  27


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++|.+.+.
T Consensus        84 id~vi~~ag~   93 (247)
T PRK05565         84 IDILVNNAGI   93 (247)
T ss_pred             CCEEEECCCc
Confidence            9999988874

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=94.91  E-value=0.095  Score=46.36  Aligned_cols=79  Identities=19%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc------EEEcCCCCCCcc---HHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT------EFVNSKNCGDKS---VSQIII  204 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~------~vi~~~~~~~~~---~~~~i~  204 (326)
                      .+.++||+|+ .+||.+++..+...|+ +|+.+.+++++.+....    .+..      .+.|..+  .++   +.+...
T Consensus         7 ~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~l~~~~~   83 (270)
T KOG0725|consen    7 AGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSK--EVDVEKLVEFAV   83 (270)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCC--HHHHHHHHHHHH
Confidence            5788999987 8999999999999999 99999999988665432    2221      1223322  122   222333


Q ss_pred             HhcCCCccEEEEcCCc
Q 020435          205 DMTDGGADYCFECVGL  220 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g~  220 (326)
                      +.+.++.|+.++..|.
T Consensus        84 ~~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   84 EKFFGKIDILVNNAGA   99 (270)
T ss_pred             HHhCCCCCEEEEcCCc
Confidence            3334589999998775

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=94.89  E-value=0.42  Score=37.07  Aligned_cols=94  Identities=18%  Similarity=0.240  Sum_probs=56.8

Q ss_pred             EEEEcc-CHHHHHHHHHHHHcC--CCEEEEEcCChhH---HHHHHhcCCcEEEcCCCCCCccH---H-------------
Q 020435          143 VVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEK---FEIGKRFGVTEFVNSKNCGDKSV---S-------------  200 (326)
Q Consensus       143 vlI~Ga-g~~G~~a~~la~~~g--~~~V~~~~~~~~~---~~~~~~~g~~~vi~~~~~~~~~~---~-------------  200 (326)
                      |.|.|+ |.+|..++...+...  . +|+++.....-   .+.+++|.+..+.-.++   ...   .             
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~---~~~~~l~~~~~~~~~~~~v~   76 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIADE---EAYEELKKALPSKGPGIEVL   76 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESSH---HHHHHHHHHHHHTTSSSEEE
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH---HHHHHHHHHhhhcCCCCEEE
Confidence            578898 999999999999876  4 77777643332   23456688777665443   211   1             


Q ss_pred             ---HHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          201 ---QIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       201 ---~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                         +.+.++... .+|+|+.++.+-..+.-.+.+++.+  +-+.+.
T Consensus        77 ~G~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g--k~iaLA  120 (129)
T PF02670_consen   77 SGPEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAG--KDIALA  120 (129)
T ss_dssp             ESHHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTT--SEEEE-
T ss_pred             eChHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCC--CeEEEe
Confidence               112233333 7888888777776677778888874  444443

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.88  E-value=0.28  Score=41.24  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=30.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ...+|+|.|+|++|.-+++.+-..|.+++..++.+
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            36799999999999999999999999888888744

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK09135 pteridine reductase; Provisional

Probab=94.88  E-value=0.18  Score=43.49  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=30.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|++++++.
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~   40 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRS   40 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCC
Confidence            4578999987 9999999999888899 999998753

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=94.87  E-value=0.093  Score=45.96  Aligned_cols=76  Identities=17%  Similarity=0.278  Sum_probs=48.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcE-EEcCCCCCCccHHHHHHHhcC--CCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~g~d~v  214 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+.++++.++.+.   ..... ..|..+  ..++.+.+.+...  +++|++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~---~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~id~l   81 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQH---ENYQFVPTDVSS--AEEVNHTVAEIIEKFGRIDGL   81 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcccccc---CceEEEEccCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            3678999987 9999999999999999 89999877654321   11111 122222  1233333333322  379999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      +++.|.
T Consensus        82 i~~Ag~   87 (266)
T PRK06171         82 VNNAGI   87 (266)
T ss_pred             EECCcc
Confidence            998873

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=94.86  E-value=0.15  Score=44.64  Aligned_cols=102  Identities=20%  Similarity=0.288  Sum_probs=61.0

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCChh------HHHHHHhcC-CcEEE--cCCCCCCccHHHHHHHh
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE------KFEIGKRFG-VTEFV--NSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~~------~~~~~~~~g-~~~vi--~~~~~~~~~~~~~i~~~  206 (326)
                      .+.++||+|+   +++|.++++.+...|+ +|+.+.++.+      ..+.+.+.+ ....+  |..+  .++..+.+.+.
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~   81 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQD--DAQIEETFETI   81 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCC--HHHHHHHHHHH
Confidence            4678999985   4899999999988999 8887754322      222332222 11222  2222  23333333333


Q ss_pred             cC--CCccEEEEcCCcH-------H----------------------HHHHHHHHhhcCCcEEEEeccC
Q 020435          207 TD--GGADYCFECVGLA-------S----------------------LVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       207 ~~--~g~d~v~d~~g~~-------~----------------------~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ..  +++|++++++|..       .                      ..+.++..++.+ |+++.++..
T Consensus        82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~-g~Iv~isS~  149 (258)
T PRK07370         82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG-GSIVTLTYL  149 (258)
T ss_pred             HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC-CeEEEEecc
Confidence            22  3799999988731       0                      123456667777 898888753

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=94.84  E-value=0.42  Score=42.11  Aligned_cols=100  Identities=14%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             hcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHHhcC
Q 020435          134 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       134 ~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      ...+++|++||=.|+|+ |...+.+++.++ ...|++++.++++.+.++    ..|.+.+.....    +.. .+.. ..
T Consensus        66 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~----D~~-~~~~-~~  138 (264)
T TIGR00446        66 ALEPDPPERVLDMAAAP-GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNF----DGR-VFGA-AV  138 (264)
T ss_pred             HhCCCCcCEEEEECCCc-hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecC----CHH-Hhhh-hc
Confidence            45678899999888755 444555555543 238999999999887664    356543221111    111 1111 12


Q ss_pred             CCccEEE-E--cCCc-------------------------HHHHHHHHHHhhcCCcEEEEe
Q 020435          209 GGADYCF-E--CVGL-------------------------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       209 ~g~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +.+|.|+ |  |.|.                         ...+..+++.++++ |+++..
T Consensus       139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvYs  198 (264)
T TIGR00446       139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG-GVLVYS  198 (264)
T ss_pred             cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEE
Confidence            2699997 5  3432                         12567888899998 988644

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.84  E-value=0.23  Score=44.99  Aligned_cols=39  Identities=21%  Similarity=0.153  Sum_probs=34.1

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  180 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~  180 (326)
                      .+|.|+|+|.+|...++.+...|. .|.+.+.+++..+.+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~   46 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAAL   46 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence            589999999999999999888999 999999998766543

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.77  E-value=0.17  Score=50.75  Aligned_cols=77  Identities=27%  Similarity=0.296  Sum_probs=51.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh---------------------HHHHHHhcCCcEEEcCCCCCC
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNSKNCGD  196 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~---------------------~~~~~~~~g~~~vi~~~~~~~  196 (326)
                      ..+.+|+|+|+|+.|+.++..++..|. +|+++++.+.                     ..++++++|++...+..-..+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD  403 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence            357899999999999999999999999 8998886532                     244556677654333211000


Q ss_pred             ccHHHHHHHhcCCCccEEEEcCCc
Q 020435          197 KSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       197 ~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      ..+ +.+.    .++|.||.+.|.
T Consensus       404 i~~-~~~~----~~~DavilAtGa  422 (654)
T PRK12769        404 ISL-ESLL----EDYDAVFVGVGT  422 (654)
T ss_pred             CCH-HHHH----hcCCEEEEeCCC
Confidence            111 1121    268999988885

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=94.76  E-value=0.41  Score=40.90  Aligned_cols=100  Identities=20%  Similarity=0.220  Sum_probs=60.5

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEEE---------cCCCCCCcc-HHHHHH
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFV---------NSKNCGDKS-VSQIII  204 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi---------~~~~~~~~~-~~~~i~  204 (326)
                      ...++.+||+.|+|. |.-++.||. .|. .|++++.++...+.+. +.+.....         ...+   -. +...+.
T Consensus        34 ~~~~~~rvL~~gCG~-G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~---v~~~~~D~~  107 (218)
T PRK13255         34 ALPAGSRVLVPLCGK-SLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGE---ITIYCGDFF  107 (218)
T ss_pred             CCCCCCeEEEeCCCC-hHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCc---eEEEECccc
Confidence            445678999998876 677777765 698 9999999999888653 23221000         0000   00 000011


Q ss_pred             Hhc--C-CCccEEEEcCCc--------HHHHHHHHHHhhcCCcEEEEec
Q 020435          205 DMT--D-GGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       205 ~~~--~-~g~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ++.  . +.+|.|+|...-        ...++.+.++|+++ |+++++.
T Consensus       108 ~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l~~  155 (218)
T PRK13255        108 ALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG-CRGLLVT  155 (218)
T ss_pred             CCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEEEE
Confidence            111  1 268999986531        23377889999998 9866544

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=94.75  E-value=0.24  Score=43.23  Aligned_cols=78  Identities=18%  Similarity=0.183  Sum_probs=47.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHH-Hh----cCCc-EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG-KR----FGVT-EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~~-~~----~g~~-~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      ++.++||+|+ +++|.++++.+...|+ +|+.+.+ ++++.+.+ ++    .+.+ +.+  |..+  .+++.+.+.+...
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~   83 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILE--PETYKELFKKIDE   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHH
Confidence            4789999987 8999999999999999 8887754 44443322 11    2321 222  2222  2233333333322


Q ss_pred             --CCccEEEEcCC
Q 020435          209 --GGADYCFECVG  219 (326)
Q Consensus       209 --~g~d~v~d~~g  219 (326)
                        +.+|+++++++
T Consensus        84 ~~g~id~lv~nAg   96 (260)
T PRK08416         84 DFDRVDFFISNAI   96 (260)
T ss_pred             hcCCccEEEECcc
Confidence              37999998875

>PRK05855 short chain dehydrogenase; Validated

Probab=94.72  E-value=0.16  Score=49.74  Aligned_cols=79  Identities=19%  Similarity=0.221  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|..+++.+...|. +|+.++++.++.+.+.    ..|.. .++  |..+  .+...+.+.+...  
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~  390 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSD--ADAMEAFAEWVRAEH  390 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            3578999987 9999999999988999 8999999887765432    23431 222  2222  1223333333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +.+|++++++|.
T Consensus       391 g~id~lv~~Ag~  402 (582)
T PRK05855        391 GVPDIVVNNAGI  402 (582)
T ss_pred             CCCcEEEECCcc
Confidence            379999999875

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=94.70  E-value=0.39  Score=42.97  Aligned_cols=70  Identities=16%  Similarity=0.164  Sum_probs=49.6

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      +|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|... .       .++.+.+.     ..|+||.|+...
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~~~-~-------~~~~e~~~-----~~d~vi~~vp~~   69 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGAET-A-------STAKAVAE-----QCDVIITMLPNS   69 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCee-c-------CCHHHHHh-----cCCEEEEeCCCH
Confidence            68999999999988887778888 8999999998888777666521 1       12222221     478888888754


Q ss_pred             HHHH
Q 020435          222 SLVQ  225 (326)
Q Consensus       222 ~~~~  225 (326)
                      ....
T Consensus        70 ~~~~   73 (296)
T PRK11559         70 PHVK   73 (296)
T ss_pred             HHHH
Confidence            4333

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=94.70  E-value=0.21  Score=45.12  Aligned_cols=78  Identities=22%  Similarity=0.177  Sum_probs=49.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHH-HhcC---Cc-EE--EcCCCCCCccHHHHHHHhc--C
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG-KRFG---VT-EF--VNSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~-~~~g---~~-~v--i~~~~~~~~~~~~~i~~~~--~  208 (326)
                      +.++||+|+ +++|.++++.+...| . +|+.++++.++.+.+ +++.   .. ++  .|..+  .++..+.+.++.  .
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   79 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGS--LDSVRQFVQQFRESG   79 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHHHHhC
Confidence            568999997 899999998888889 7 899999888766543 2332   11 12  23222  122333333322  2


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|+++|.
T Consensus        80 ~~iD~lI~nAG~   91 (314)
T TIGR01289        80 RPLDALVCNAAV   91 (314)
T ss_pred             CCCCEEEECCCc
Confidence            379999988763

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=94.67  E-value=0.21  Score=46.22  Aligned_cols=82  Identities=21%  Similarity=0.267  Sum_probs=48.7

Q ss_pred             CCCCEEEEEcc-CHHHHH--HHHHHHHcCCCEEEEEcCChh--H--------------HHHHHhcCCc-EEEcCCCCCCc
Q 020435          138 EVGSTVVIFGL-GSIGLA--VAEGARLCGATRIIGVDVISE--K--------------FEIGKRFGVT-EFVNSKNCGDK  197 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~--a~~la~~~g~~~V~~~~~~~~--~--------------~~~~~~~g~~-~vi~~~~~~~~  197 (326)
                      ..+.++||+|+ +++|++  +++.+ ..|+ +|+++....+  +              .+.+++.|.. ..+.-+-.+.+
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E  116 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE  116 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence            34678999986 899999  56666 8899 8888764221  1              2234455643 23333321223


Q ss_pred             cHHHHHHHhcC--CCccEEEEcCCcH
Q 020435          198 SVSQIIIDMTD--GGADYCFECVGLA  221 (326)
Q Consensus       198 ~~~~~i~~~~~--~g~d~v~d~~g~~  221 (326)
                      ...+.+.++..  |++|+++++++.+
T Consensus       117 ~v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        117 IKQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCccC
Confidence            33333333322  3899999999876

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=94.67  E-value=0.27  Score=45.50  Aligned_cols=59  Identities=20%  Similarity=0.215  Sum_probs=43.0

Q ss_pred             ccccccccchhhhhhhhhhhhccc-CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 020435          114 PNRACLLSCGVSTGVGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  175 (326)
Q Consensus       114 ~~~aa~l~~~~~ta~~~l~~~~~~-~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~  175 (326)
                      .++|.+..+.+.+- . +.+.... -.|.+|.|.|.|++|+.+++.+...|+ +|++++.+..
T Consensus       182 r~~aTg~Gv~~~~~-~-a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g  241 (411)
T COG0334         182 RSEATGYGVFYAIR-E-ALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG  241 (411)
T ss_pred             CCcccceehHHHHH-H-HHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence            34455555433333 2 3344444 379999999999999999999988899 9999987766

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=94.66  E-value=0.39  Score=39.82  Aligned_cols=71  Identities=23%  Similarity=0.275  Sum_probs=55.9

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      -+++|++||=.|+|. |.++..|....++ ..++++.++++...+.+-|.. |+.      .++.+.+....++.||+||
T Consensus        10 ~I~pgsrVLDLGCGd-G~LL~~L~~~k~v-~g~GvEid~~~v~~cv~rGv~-Viq------~Dld~gL~~f~d~sFD~VI   80 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGD-GELLAYLKDEKQV-DGYGVEIDPDNVAACVARGVS-VIQ------GDLDEGLADFPDQSFDYVI   80 (193)
T ss_pred             HcCCCCEEEecCCCc-hHHHHHHHHhcCC-eEEEEecCHHHHHHHHHcCCC-EEE------CCHHHhHhhCCCCCccEEe
Confidence            467899999999875 7777777777888 999999999999998888875 443      3455566666656999998

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=94.66  E-value=0.18  Score=43.63  Aligned_cols=76  Identities=25%  Similarity=0.264  Sum_probs=47.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcC--CCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g~d~v  214 (326)
                      +++++||+|+ |.+|..+++.+...|. +|++++++.     ....+.. ..+..+-...+.+.+.+.+...  +.+|++
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF-----LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVL   80 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch-----hhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4679999987 8999999999988999 999998775     1222211 2221111011233333333222  379999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      |++.+.
T Consensus        81 i~~ag~   86 (252)
T PRK08220         81 VNAAGI   86 (252)
T ss_pred             EECCCc
Confidence            998875

>TIGR02415 23BDH acetoin reductases

Probab=94.64  E-value=0.23  Score=43.07  Aligned_cols=77  Identities=19%  Similarity=0.209  Sum_probs=48.8

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      .+++|+|+ |.+|..+++.+...|+ +|+.+.+++++.+.+    +..+.. ..+  |..+  .+.+.+.+.+...  +.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD--KDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHcCC
Confidence            36899987 9999999999988999 899999887655432    223322 122  2222  1223333333322  27


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+++++.+.
T Consensus        78 id~vi~~ag~   87 (254)
T TIGR02415        78 FDVMVNNAGV   87 (254)
T ss_pred             CCEEEECCCc
Confidence            8999998874

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PLN00016 RNA-binding protein; Provisional

Probab=94.64  E-value=0.39  Score=44.63  Aligned_cols=95  Identities=16%  Similarity=0.126  Sum_probs=60.1

Q ss_pred             CCEEEEE----cc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-----------HHhcCCcEEEcCCCCCCccHHHHH
Q 020435          140 GSTVVIF----GL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-----------GKRFGVTEFVNSKNCGDKSVSQII  203 (326)
Q Consensus       140 ~~~vlI~----Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-----------~~~~g~~~vi~~~~~~~~~~~~~i  203 (326)
                      ..+|||+    |+ |-+|..+++.+...|. +|+++++++.....           +...++..+.       .++.+ +
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-------~D~~d-~  122 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-------GDPAD-V  122 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-------ecHHH-H
Confidence            4689999    98 9999999999888898 99999988754321           1223443332       12222 3


Q ss_pred             HHhcCC-CccEEEEcCCcHH-HHHHHHHHhhcC-CcEEEEecc
Q 020435          204 IDMTDG-GADYCFECVGLAS-LVQEAYACCRKG-WGKTIVLGV  243 (326)
Q Consensus       204 ~~~~~~-g~d~v~d~~g~~~-~~~~~~~~l~~~-~G~~v~~g~  243 (326)
                      .+.... ++|+|+++.+... ....+++.++.. -.++|.++.
T Consensus       123 ~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS  165 (378)
T PLN00016        123 KSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS  165 (378)
T ss_pred             HhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            333333 8999999876432 234555666543 136877664

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=94.59  E-value=0.16  Score=43.52  Aligned_cols=103  Identities=21%  Similarity=0.398  Sum_probs=65.3

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCCcE--EEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i  203 (326)
                      +.....++++++||-.|+|. |..+..+++..+. .+|++++.+++..+.+++    .+.+.  ++..+.   .++    
T Consensus        37 ~l~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~----  108 (231)
T TIGR02752        37 TMKRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA---MEL----  108 (231)
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech---hcC----
Confidence            34556778899999998865 6666778777542 289999999888776653    22221  222111   110    


Q ss_pred             HHhcCCCccEEEEcCC------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          204 IDMTDGGADYCFECVG------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       ....+.+|+|+-+..      -...+..+.+.|+++ |.++....
T Consensus       109 -~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~  152 (231)
T TIGR02752       109 -PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG-GKVVCLET  152 (231)
T ss_pred             -CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcC-eEEEEEEC
Confidence             111237999974322      123467788999998 99987754

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.53  E-value=0.38  Score=45.57  Aligned_cols=102  Identities=11%  Similarity=0.193  Sum_probs=63.2

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EE--EcCCCCCCccHHHHHH
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSVSQIII  204 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~~i~  204 (326)
                      .....+++|++||=.|+|+ |..++.+++.++..+|++++.++++.+.++    ++|.. .+  .+.+.   .+.    .
T Consensus       231 ~~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~---~~~----~  302 (426)
T TIGR00563       231 ATWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG---RGP----S  302 (426)
T ss_pred             HHHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc---ccc----c
Confidence            3456778899999998654 444445555554238999999999887654    35654 22  22221   111    0


Q ss_pred             HhcCC-CccEEE-E--cCCc-------------------------HHHHHHHHHHhhcCCcEEEEec
Q 020435          205 DMTDG-GADYCF-E--CVGL-------------------------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       205 ~~~~~-g~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ..... .+|.|| |  |.|.                         ...+..+++.|+++ |+++..-
T Consensus       303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvyst  368 (426)
T TIGR00563       303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYAT  368 (426)
T ss_pred             ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence            01122 799998 5  4442                         13567788999998 9988653

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.51  E-value=0.26  Score=42.68  Aligned_cols=77  Identities=17%  Similarity=0.238  Sum_probs=47.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh-HHH----HHHhcCCc-EEE--cCCCCCCccHHHHHHHhcC--C
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFE----IGKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~-~~~----~~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .++||+|+ |.+|..+++.+...|+ +|+.+++... ..+    .++..+.. .++  |..+  ..++.+.+.++..  +
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   79 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF-DLAINDRPDDEELAATQQELRALGVEVIFFPADVAD--LSAHEAMLDAAQAAWG   79 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHhcC
Confidence            57999987 9999999999988999 8998886543 221    22223321 222  2222  1233333333322  2


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|+++.+.|.
T Consensus        80 ~id~vi~~ag~   90 (256)
T PRK12745         80 RIDCLVNNAGV   90 (256)
T ss_pred             CCCEEEECCcc
Confidence            79999998874

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.50  E-value=0.33  Score=48.31  Aligned_cols=77  Identities=16%  Similarity=0.255  Sum_probs=58.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      .++|+|.|.|.+|+.+++.++..|. ++++++.++++.+.+++.|.. ++..+.    .-.+.+++.--+.+|.++-+.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~-v~~GDa----t~~~~L~~agi~~A~~vvv~~~  473 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMK-VFYGDA----TRMDLLESAGAAKAEVLINAID  473 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCe-EEEEeC----CCHHHHHhcCCCcCCEEEEEeC
Confidence            3689999999999999999999998 899999999999999988864 333322    1122333332228999999998


Q ss_pred             cHH
Q 020435          220 LAS  222 (326)
Q Consensus       220 ~~~  222 (326)
                      ++.
T Consensus       474 d~~  476 (621)
T PRK03562        474 DPQ  476 (621)
T ss_pred             CHH
Confidence            866

>PRK06141 ornithine cyclodeaminase; Validated

Probab=94.49  E-value=0.43  Score=43.24  Aligned_cols=93  Identities=12%  Similarity=0.015  Sum_probs=59.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHH-hc---CCcEEEcCCCCCCccHHHHHHHhcCCCcc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGK-RF---GVTEFVNSKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~-~g~~~V~~~~~~~~~~~~~~-~~---g~~~vi~~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      ....+|+|+|+|..|...++.+.. .+..+|.+..+++++.+.+. ++   +.. +...     .+..+.+     .++|
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~-~~~~-----~~~~~av-----~~aD  191 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD-AEVV-----TDLEAAV-----RQAD  191 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc-eEEe-----CCHHHHH-----hcCC
Confidence            457799999999999988865543 66668999999988876543 33   321 2111     1222223     2599


Q ss_pred             EEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          213 YCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       213 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +|+.|.++...+ .....++++ -.+..+|.
T Consensus       192 IVi~aT~s~~pv-l~~~~l~~g-~~i~~ig~  220 (314)
T PRK06141        192 IISCATLSTEPL-VRGEWLKPG-THLDLVGN  220 (314)
T ss_pred             EEEEeeCCCCCE-ecHHHcCCC-CEEEeeCC
Confidence            999888875411 112567886 66656654

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=94.45  E-value=0.25  Score=42.17  Aligned_cols=112  Identities=12%  Similarity=0.016  Sum_probs=65.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh-HHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      ++.+|||+|+|.++.-=++.+...|+ +|++++..-. ....+.+.|.-..+. .+     +.+.-  +  .++++||-|
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~~~~~i~~~~-r~-----~~~~d--l--~g~~LViaA   92 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLKKYGNLKLIK-GN-----YDKEF--I--KDKHLIVIA   92 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHHhCCCEEEEe-CC-----CChHH--h--CCCcEEEEC
Confidence            47799999999999887778888898 8888864322 222222233222221 11     11111  1  279999999


Q ss_pred             CCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhc-CCEE
Q 020435          218 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS-GKIL  264 (326)
Q Consensus       218 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~i  264 (326)
                      .+.+..-+......+.. +.++.....  .....|-.+.+..+ .+.+
T Consensus        93 TdD~~vN~~I~~~a~~~-~~lvn~vd~--p~~~dFi~PAiv~rg~l~I  137 (223)
T PRK05562         93 TDDEKLNNKIRKHCDRL-YKLYIDCSD--YKKGLCIIPYQRSTKNFVF  137 (223)
T ss_pred             CCCHHHHHHHHHHHHHc-CCeEEEcCC--cccCeEEeeeEEecCCEEE
Confidence            99998555666666665 666665432  23344444444443 3444

>PRK05599 hypothetical protein; Provisional

Probab=94.43  E-value=0.3  Score=42.33  Aligned_cols=75  Identities=13%  Similarity=0.213  Sum_probs=47.6

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc--EEE--cCCCCCCccHHHHHHHhcC--CC
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT--EFV--NSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~--~vi--~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      ++||+|+ +++|.++++.+. .|. +|+.+.+++++.+.+    ++.+.+  +.+  |..+  .++..+.+.+...  ++
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~-~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~   77 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGE-DVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQD--LDTHRELVKQTQELAGE   77 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCC--HHHHHHHHHHHHHhcCC
Confidence            6899987 899999888776 487 999999988776644    223322  222  2222  2233333333222  38


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus        78 id~lv~nag~   87 (246)
T PRK05599         78 ISLAVVAFGI   87 (246)
T ss_pred             CCEEEEecCc
Confidence            9999988874

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.40  E-value=0.4  Score=38.61  Aligned_cols=93  Identities=15%  Similarity=0.087  Sum_probs=57.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC------cEEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV------TEFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~------~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      +|.|.|+|+.|.+++..+...|. +|....++++..+.+++.+.      ...+...-.-..++.+.+     .+.|+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-----~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-----EDADIII   74 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-----TT-SEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-----CcccEEE
Confidence            68899999999999999999997 99999999988777754221      111100000002233333     2689999


Q ss_pred             EcCCcHHHHHHHHHHhhc---CCcEEEEec
Q 020435          216 ECVGLASLVQEAYACCRK---GWGKTIVLG  242 (326)
Q Consensus       216 d~~g~~~~~~~~~~~l~~---~~G~~v~~g  242 (326)
                      -++.+.. ++..++.+.+   . +..+..-
T Consensus        75 iavPs~~-~~~~~~~l~~~l~~-~~~ii~~  102 (157)
T PF01210_consen   75 IAVPSQA-HREVLEQLAPYLKK-GQIIISA  102 (157)
T ss_dssp             E-S-GGG-HHHHHHHHTTTSHT-T-EEEET
T ss_pred             ecccHHH-HHHHHHHHhhccCC-CCEEEEe
Confidence            8888876 5666666655   2 4555443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PTZ00146 fibrillarin; Provisional

Probab=94.40  E-value=0.51  Score=42.02  Aligned_cols=102  Identities=19%  Similarity=0.208  Sum_probs=60.9

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHH----Hh-cCCcEEEcCCCCCCccHHHHHHH
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIG----KR-FGVTEFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~----~~-~g~~~vi~~~~~~~~~~~~~i~~  205 (326)
                      ++...++++++||=.|+|+ |..+..++...+. .+|++++.+++..+.+    +. .++..++. +.   .. ......
T Consensus       125 ~~~l~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~-Da---~~-p~~y~~  198 (293)
T PTZ00146        125 VANIPIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIE-DA---RY-PQKYRM  198 (293)
T ss_pred             cceeccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEEC-Cc---cC-hhhhhc
Confidence            3556789999999998765 6677778887752 3799999886533222    22 23332321 21   00 111111


Q ss_pred             hcCCCccEEEEcCCcHH----HHHHHHHHhhcCCcEEEEe
Q 020435          206 MTDGGADYCFECVGLAS----LVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       206 ~~~~g~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~  241 (326)
                      .. +.+|+||.....+.    ....+.+.|+++ |.++..
T Consensus       199 ~~-~~vDvV~~Dva~pdq~~il~~na~r~LKpG-G~~vI~  236 (293)
T PTZ00146        199 LV-PMVDVIFADVAQPDQARIVALNAQYFLKNG-GHFIIS  236 (293)
T ss_pred             cc-CCCCEEEEeCCCcchHHHHHHHHHHhccCC-CEEEEE
Confidence            11 26999985444332    234567799998 999873

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=94.39  E-value=0.31  Score=41.78  Aligned_cols=77  Identities=19%  Similarity=0.232  Sum_probs=46.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHH-HHh---cCCc-EEE--cCCCCCCccHHHHHHHhc--CC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI-GKR---FGVT-EFV--NSKNCGDKSVSQIIIDMT--DG  209 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~-~~~---~g~~-~vi--~~~~~~~~~~~~~i~~~~--~~  209 (326)
                      .++||+|+ |.+|..+++.+...|+ +|+++.+ ++++.+. ..+   .+.. .++  |..+  ...+.+.+.++.  .+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   77 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSS--FESCKAAVAKVEAELG   77 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCC--HHHHHHHHHHHHHHcC
Confidence            36899987 9999999999988999 8888877 4433322 221   2211 122  2222  122333333332  13


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      .+|++|.+.|.
T Consensus        78 ~id~vi~~ag~   88 (242)
T TIGR01829        78 PIDVLVNNAGI   88 (242)
T ss_pred             CCcEEEECCCC
Confidence            79999998873

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.39  E-value=0.32  Score=44.86  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=31.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      ...+|||.|+|++|..+++.+...|.+++..++.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            357999999999999999999999998888888643

>PRK07201 short chain dehydrogenase; Provisional

Probab=94.38  E-value=0.2  Score=50.15  Aligned_cols=78  Identities=26%  Similarity=0.285  Sum_probs=51.7

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--C
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      +.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    ..+.. .++  |..+  .+++.+.+.+...  +
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g  447 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTD--SAAVDHTVKDILAEHG  447 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHhcC
Confidence            678999987 9999999998888899 9999999887765432    22322 222  2222  1233333333322  2


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus       448 ~id~li~~Ag~  458 (657)
T PRK07201        448 HVDYLVNNAGR  458 (657)
T ss_pred             CCCEEEECCCC
Confidence            79999998883

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=94.37  E-value=0.35  Score=43.71  Aligned_cols=39  Identities=18%  Similarity=0.062  Sum_probs=32.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  178 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~  178 (326)
                      .+.+|||+|+ |-+|..+++.+...|. +|+++.++.++.+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~   43 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTDRK   43 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcchH
Confidence            4789999987 9999999998888898 8998887765433

>PRK07069 short chain dehydrogenase; Validated

Probab=94.36  E-value=0.19  Score=43.42  Aligned_cols=76  Identities=18%  Similarity=0.296  Sum_probs=47.3

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC-hhHHHHHH-hc----CCc--EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEIGK-RF----GVT--EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~-~~~~~~~~-~~----g~~--~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ++||+|+ |.+|..+++.+...|+ +|++++++ .++.+.+. .+    +..  +.+  |..+  .+.+.+.+.+...  
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   77 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA-KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTD--EAQWQALLAQAADAM   77 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCC--HHHHHHHHHHHHHHc
Confidence            3789986 9999999999988899 99999987 55444332 11    111  112  2222  2333333333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|+++.++|.
T Consensus        78 ~~id~vi~~ag~   89 (251)
T PRK07069         78 GGLSVLVNNAGV   89 (251)
T ss_pred             CCccEEEECCCc
Confidence            379999998874

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=94.35  E-value=0.26  Score=44.35  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH---HHHhcC-Cc---EEEcCCCCCCccHHHHHHHhcCCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE---IGKRFG-VT---EFVNSKNCGDKSVSQIIIDMTDGG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~---~~~~~g-~~---~vi~~~~~~~~~~~~~i~~~~~~g  210 (326)
                      .+.+|+|+|| |=||..++..+...|. +|.+++|++++.+   .++++. +.   .++..+=...+.+.+.+     .|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY-~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai-----~g   78 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY-TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAI-----DG   78 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC-EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHH-----hC
Confidence            5789999998 9999999999999999 9999999998743   466654 21   22222211123343333     26


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|.||.++..
T Consensus        79 cdgVfH~Asp   88 (327)
T KOG1502|consen   79 CDGVFHTASP   88 (327)
T ss_pred             CCEEEEeCcc
Confidence            9999987664

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=94.34  E-value=0.72  Score=39.10  Aligned_cols=98  Identities=19%  Similarity=0.261  Sum_probs=60.0

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYC  214 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v  214 (326)
                      ++++++||=+|+|+ |.....+++..+. .+|++++.++..    ..-++ .++..+- .+....+.+.+.... .+|+|
T Consensus        49 ~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v-~~i~~D~-~~~~~~~~i~~~~~~~~~D~V  121 (209)
T PRK11188         49 FKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPMD----PIVGV-DFLQGDF-RDELVLKALLERVGDSKVQVV  121 (209)
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEeccccc----CCCCc-EEEecCC-CChHHHHHHHHHhCCCCCCEE
Confidence            57889999998765 5555566666542 389999987621    11122 3343322 123334445444444 89999


Q ss_pred             EEcC-----Cc------------HHHHHHHHHHhhcCCcEEEEec
Q 020435          215 FECV-----GL------------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       215 ~d~~-----g~------------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +...     +.            ...++.+.+.|+++ |.++..-
T Consensus       122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG-G~~vi~~  165 (209)
T PRK11188        122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG-GSFVVKV  165 (209)
T ss_pred             ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEE
Confidence            9532     21            12467888999998 9998853

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.34  E-value=0.2  Score=45.21  Aligned_cols=96  Identities=16%  Similarity=0.071  Sum_probs=59.0

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CCcEEEcCCCCCCccHHHHHHHhc---CCCccEEEE
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTEFVNSKNCGDKSVSQIIIDMT---DGGADYCFE  216 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~i~~~~---~~g~d~v~d  216 (326)
                      .+|+|+|+|++|......+...|. +|+.++++++..+.+++- |. .+.+...  ...+.  +...+   .+.+|+||-
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl-~i~~~g~--~~~~~--~~~~~~~~~~~~D~viv   76 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGL-TLVEQGQ--ASLYA--IPAETADAAEPIHRLLL   76 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCe-EEeeCCc--ceeec--cCCCCcccccccCEEEE
Confidence            479999999999888877777888 899999988777777643 43 1221111  00000  00000   127899998


Q ss_pred             cCCcHH---HHHHHHHHhhcCCcEEEEecc
Q 020435          217 CVGLAS---LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       217 ~~g~~~---~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      |+=.-.   .++.+...+.++ ..++.+.+
T Consensus        77 ~vK~~~~~~al~~l~~~l~~~-t~vv~lQN  105 (305)
T PRK05708         77 ACKAYDAEPAVASLAHRLAPG-AELLLLQN  105 (305)
T ss_pred             ECCHHhHHHHHHHHHhhCCCC-CEEEEEeC
Confidence            776544   233444456666 66666654

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.34  E-value=0.28  Score=46.78  Aligned_cols=70  Identities=26%  Similarity=0.364  Sum_probs=48.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh-hHH----HHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-EKF----EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  213 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~-~~~----~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~  213 (326)
                      .+.+|+|+|+|.+|+.+++.+...|+ +|++++... +..    +.+.+.|.+ ++..+.   .   +..    .+++|+
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~~~-~~~~~~---~---~~~----~~~~d~   71 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELGIE-LVLGEY---P---EEF----LEGVDL   71 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCE-EEeCCc---c---hhH----hhcCCE
Confidence            46899999998899999999999999 999999764 222    334445654 332222   1   111    126999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      |+.+.+.
T Consensus        72 vv~~~g~   78 (450)
T PRK14106         72 VVVSPGV   78 (450)
T ss_pred             EEECCCC
Confidence            9988885

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.33  E-value=0.4  Score=42.66  Aligned_cols=76  Identities=17%  Similarity=0.260  Sum_probs=55.6

Q ss_pred             CCCCEEEEEccCH-HHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          138 EVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       138 ~~~~~vlI~Gag~-~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      -.|.+|+|.|+|. +|..++.++...|+ +|++..+..                      .++.+.+     ..+|++++
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t----------------------~~L~~~~-----~~aDIvI~  208 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT----------------------QNLPELV-----KQADIIVG  208 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc----------------------hhHHHHh-----ccCCEEEE
Confidence            4688999999975 99999999999999 888776421                      1222222     15899999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++|.+..+.  .+.++++ ..++.++..
T Consensus       209 AtG~~~~v~--~~~lk~g-avViDvg~n  233 (283)
T PRK14192        209 AVGKPELIK--KDWIKQG-AVVVDAGFH  233 (283)
T ss_pred             ccCCCCcCC--HHHcCCC-CEEEEEEEe
Confidence            998776333  3558887 888888764

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.32  E-value=0.18  Score=40.98  Aligned_cols=43  Identities=23%  Similarity=0.319  Sum_probs=37.1

Q ss_pred             CCCEEEEEccC-HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh
Q 020435          139 VGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  182 (326)
Q Consensus       139 ~~~~vlI~Gag-~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~  182 (326)
                      .|..|+++|+| +||...++-+...|+ .|+++.|.++.+..+-+
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~   49 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVK   49 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHh
Confidence            47789999984 899999999999999 99999999998876544

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.32  E-value=0.22  Score=44.64  Aligned_cols=95  Identities=14%  Similarity=0.134  Sum_probs=57.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCC-CccHHHHHHHhcCCCccEEEEcCCc
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG-DKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~-~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      +|+|+|+|.+|.+.+..+...|. +|+.+++++++.+.+++.|...  +..+.. .........+.  +.+|+||-|+..
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~--~~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRL--EDGEITVPVLAADDPAEL--GPQDLVILAVKA   76 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcc--cCCceeecccCCCChhHc--CCCCEEEEeccc
Confidence            68999999999988888888887 8999998888777776655421  100000 00000011111  379999988886


Q ss_pred             HHHHHHHHHHh----hcCCcEEEEecc
Q 020435          221 ASLVQEAYACC----RKGWGKTIVLGV  243 (326)
Q Consensus       221 ~~~~~~~~~~l----~~~~G~~v~~g~  243 (326)
                      .. ....+..+    .++ ..++.+..
T Consensus        77 ~~-~~~~~~~l~~~l~~~-~~iv~~~n  101 (304)
T PRK06522         77 YQ-LPAALPSLAPLLGPD-TPVLFLQN  101 (304)
T ss_pred             cc-HHHHHHHHhhhcCCC-CEEEEecC
Confidence            55 44444444    344 45655543

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=94.32  E-value=0.23  Score=44.14  Aligned_cols=75  Identities=20%  Similarity=0.187  Sum_probs=45.4

Q ss_pred             EEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc----C---CcEE-E-cCCCCCCccHHHHHHHhcCC-C
Q 020435          143 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----G---VTEF-V-NSKNCGDKSVSQIIIDMTDG-G  210 (326)
Q Consensus       143 vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~----g---~~~v-i-~~~~~~~~~~~~~i~~~~~~-g  210 (326)
                      |||+|+ |.+|..+++.+...+..+++.+++++.++-.++ ++    .   ..-. . -..+   -.-.+.+.+.... +
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigD---vrd~~~l~~~~~~~~   77 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGD---VRDKERLNRIFEEYK   77 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTS---CCHHHHHHHHTT--T
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeec---ccCHHHHHHHHhhcC
Confidence            799987 999998888888777669999999998876653 23    1   1111 0 0111   2234566677666 9


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+||.++.-
T Consensus        78 pdiVfHaAA~   87 (293)
T PF02719_consen   78 PDIVFHAAAL   87 (293)
T ss_dssp             -SEEEE----
T ss_pred             CCEEEEChhc
Confidence            9999997764

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=94.31  E-value=0.34  Score=44.67  Aligned_cols=101  Identities=22%  Similarity=0.341  Sum_probs=67.0

Q ss_pred             hhcccCCCCEEEEE-cc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcE--EEcCCCCCCccHHHHHH
Q 020435          133 RTANVEVGSTVVIF-GL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE--FVNSKNCGDKSVSQIII  204 (326)
Q Consensus       133 ~~~~~~~~~~vlI~-Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~--vi~~~~~~~~~~~~~i~  204 (326)
                      ...+.++|++||=. +| |+--..+++++...|. .|++.+.++.+...++    .+|...  +++.+.   ..+.+   
T Consensus       150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~-iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~---~~~~~---  222 (355)
T COG0144         150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGA-IVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA---RRLAE---  222 (355)
T ss_pred             HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc---ccccc---
Confidence            56788999999988 44 6666666666666676 7899999999987664    588764  444333   11111   


Q ss_pred             HhcCC-CccEEE-E--cCCc-------------------------HHHHHHHHHHhhcCCcEEEEe
Q 020435          205 DMTDG-GADYCF-E--CVGL-------------------------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       205 ~~~~~-g~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ....+ .||.|+ |  |.|.                         ..++..+++.++++ |.++-.
T Consensus       223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G-G~LVYS  287 (355)
T COG0144         223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG-GVLVYS  287 (355)
T ss_pred             cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEE
Confidence            11122 499997 6  4443                         23577889999997 877543

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=94.28  E-value=0.19  Score=41.25  Aligned_cols=92  Identities=13%  Similarity=0.242  Sum_probs=60.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC--cEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .+|.|+|| |-+|..+++=|+..|. .|++++|++++....+..-+  ..+++...     +.+.   +  .|+|+||++
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~~~-----~a~~---l--~g~DaVIsA   69 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDLTS-----LASD---L--AGHDAVISA   69 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccChhh-----hHhh---h--cCCceEEEe
Confidence            37889998 9999999999999998 99999999998866432210  11222111     1111   1  289999998


Q ss_pred             CCcH---------HHHHHHHHHhhcC-CcEEEEecc
Q 020435          218 VGLA---------SLVQEAYACCRKG-WGKTIVLGV  243 (326)
Q Consensus       218 ~g~~---------~~~~~~~~~l~~~-~G~~v~~g~  243 (326)
                      .+..         ...+.++..|+.- -.++..+|.
T Consensus        70 ~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGG  105 (211)
T COG2910          70 FGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGG  105 (211)
T ss_pred             ccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcC
Confidence            8864         1133456666652 146777765

>PRK12746 short chain dehydrogenase; Provisional

Probab=94.26  E-value=0.36  Score=41.80  Aligned_cols=78  Identities=15%  Similarity=0.178  Sum_probs=47.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHHH-Hh---cCCc-EEE--cCCCCCCccHHHHHHHhc---
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG-KR---FGVT-EFV--NSKNCGDKSVSQIIIDMT---  207 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~~~~~~~-~~---~g~~-~vi--~~~~~~~~~~~~~i~~~~---  207 (326)
                      +.+++|+|+ |.+|..+++.+...|. +|++. .++.++.+.+ ..   .+.. +++  |..+  .+++.+.+++..   
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~i~~~~~~~~~~~   82 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNS--IDGVKKLVEQLKNEL   82 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCC--HHHHHHHHHHHHHHh
Confidence            579999987 9999999998888898 77664 5666554332 22   2221 222  2222  223333333321   


Q ss_pred             ----C-CCccEEEEcCCc
Q 020435          208 ----D-GGADYCFECVGL  220 (326)
Q Consensus       208 ----~-~g~d~v~d~~g~  220 (326)
                          + +++|++|.++|.
T Consensus        83 ~~~~~~~~id~vi~~ag~  100 (254)
T PRK12746         83 QIRVGTSEIDILVNNAGI  100 (254)
T ss_pred             ccccCCCCccEEEECCCC
Confidence                1 269999998874

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=94.26  E-value=0.35  Score=42.19  Aligned_cols=79  Identities=23%  Similarity=0.178  Sum_probs=48.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh-hHHHH----HHhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEI----GKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~-~~~~~----~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+.++. +..+.    ++..+.. ..+  |..+  ..+..+.+.+... 
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~   82 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTV--ESDVVNLIQTAVKE   82 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            4789999987 9999999999999998 787777643 22222    2233432 122  3222  1222222333222 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|+++++.+.
T Consensus        83 ~g~id~lv~~ag~   95 (261)
T PRK08936         83 FGTLDVMINNAGI   95 (261)
T ss_pred             cCCCCEEEECCCC
Confidence             379999998874

>TIGR00452 methyltransferase, putative

Probab=94.25  E-value=0.24  Score=44.78  Aligned_cols=99  Identities=13%  Similarity=0.089  Sum_probs=61.6

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH---HHhc-C---CcEEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI---GKRF-G---VTEFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~---~~~~-g---~~~vi~~~~~~~~~~~~~i  203 (326)
                      +.......++++||-+|+|. |..+..+++. |+..|++++.++.....   ++.+ +   ..+++..      ++    
T Consensus       113 ~l~~l~~~~g~~VLDvGCG~-G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~------~i----  180 (314)
T TIGR00452       113 VLPHLSPLKGRTILDVGCGS-GYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL------GI----  180 (314)
T ss_pred             HHHhcCCCCCCEEEEeccCC-cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC------CH----
Confidence            33444566789999999876 6666666654 65579999988865543   2222 2   1122211      11    


Q ss_pred             HHhcCC-CccEEEEcC-----Cc-HHHHHHHHHHhhcCCcEEEEec
Q 020435          204 IDMTDG-GADYCFECV-----GL-ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       204 ~~~~~~-g~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .++... .||+|+...     .+ ...+..+.++|+++ |.+++..
T Consensus       181 e~lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG-G~Lvlet  225 (314)
T TIGR00452       181 EQLHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK-GELVLET  225 (314)
T ss_pred             HHCCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC-CEEEEEE
Confidence            122222 799998532     12 24588999999998 9998753

Known examples to date are restricted to the proteobacteria.

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.24  E-value=0.37  Score=41.28  Aligned_cols=77  Identities=18%  Similarity=0.242  Sum_probs=46.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh-HHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~-~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ..+|||+|+ |.+|..+++.+...|. +|+++.+..+ ..+.+    ...+.. +++  |..+  .+++.+.+.+...  
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~   82 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGA-DVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTD--KAALEAAVAAAVERF   82 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCC--HHHHHHHHHHHHHHc
Confidence            468999987 9999999999998998 7777555443 22222    222322 222  2222  1233333333221  


Q ss_pred             CCccEEEEcCC
Q 020435          209 GGADYCFECVG  219 (326)
Q Consensus       209 ~g~d~v~d~~g  219 (326)
                      +++|.+|.+.+
T Consensus        83 ~~id~vi~~ag   93 (249)
T PRK12825         83 GRIDILVNNAG   93 (249)
T ss_pred             CCCCEEEECCc
Confidence            37999999887

>PLN02256 arogenate dehydrogenase

Probab=94.24  E-value=0.88  Score=41.00  Aligned_cols=97  Identities=12%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCC
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGG  210 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g  210 (326)
                      +.+...-..+.+|.|+|.|.+|...+..++..|. +|+++++++. .+.++++|+.. .       .+..+.+    ...
T Consensus        27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv~~-~-------~~~~e~~----~~~   92 (304)
T PLN02256         27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGVSF-F-------RDPDDFC----EEH   92 (304)
T ss_pred             HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCCee-e-------CCHHHHh----hCC
Confidence            3444555567799999999999999998888887 8999988764 35555666531 1       1222211    125


Q ss_pred             ccEEEEcCCcHHHHHHHHHH-----hhcCCcEEEEecc
Q 020435          211 ADYCFECVGLASLVQEAYAC-----CRKGWGKTIVLGV  243 (326)
Q Consensus       211 ~d~v~d~~g~~~~~~~~~~~-----l~~~~G~~v~~g~  243 (326)
                      +|+||-|+.... ....+.-     ++++ ..++.++.
T Consensus        93 aDvVilavp~~~-~~~vl~~l~~~~l~~~-~iviDv~S  128 (304)
T PLN02256         93 PDVVLLCTSILS-TEAVLRSLPLQRLKRS-TLFVDVLS  128 (304)
T ss_pred             CCEEEEecCHHH-HHHHHHhhhhhccCCC-CEEEecCC
Confidence            788888877554 3333332     4455 55555544

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=94.22  E-value=0.53  Score=42.96  Aligned_cols=86  Identities=27%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++..|. +|++.+++++.....    .    ...    .++.+.+.     ..|+|+-+.
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~~~~~----~----~~~----~~l~ell~-----~aDiVil~l  206 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNKDLDF----L----TYK----DSVKEAIK-----DADIISLHV  206 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhHhhhh----h----hcc----CCHHHHHh-----cCCEEEEeC
Confidence            46799999999999999999999999 999999876543211    0    011    12222222     478888776


Q ss_pred             CcHH-----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 GLAS-----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~~-----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ....     .....+..++++ ..+|.++.
T Consensus       207 P~t~~t~~li~~~~l~~mk~g-avlIN~aR  235 (330)
T PRK12480        207 PANKESYHLFDKAMFDHVKKG-AILVNAAR  235 (330)
T ss_pred             CCcHHHHHHHhHHHHhcCCCC-cEEEEcCC
Confidence            6432     233556677886 77776654

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=94.22  E-value=0.33  Score=44.33  Aligned_cols=96  Identities=18%  Similarity=0.232  Sum_probs=62.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC-c--EEEcCCCCCCccHHHHHHHhcCCCccEE
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-T--EFVNSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~-~--~vi~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      .++.+||-+|+|. |..+..+++..+..+|++++.+++..+.+++... .  .++.      .+..+ + ....+.+|+|
T Consensus       112 ~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~------gD~e~-l-p~~~~sFDvV  182 (340)
T PLN02490        112 DRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIE------GDAED-L-PFPTDYADRY  182 (340)
T ss_pred             CCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEe------ccHHh-C-CCCCCceeEE
Confidence            4678999998866 6666777777643489999999888777765321 1  1211      12111 0 1112379998


Q ss_pred             EEcCC------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          215 FECVG------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       215 ~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.+..      ....++++.+.|+++ |++++.+.
T Consensus       183 Is~~~L~~~~d~~~~L~e~~rvLkPG-G~LvIi~~  216 (340)
T PLN02490        183 VSAGSIEYWPDPQRGIKEAYRVLKIG-GKACLIGP  216 (340)
T ss_pred             EEcChhhhCCCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            85321      234578999999998 99988754

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.18  E-value=0.32  Score=42.50  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=48.5

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCCh--hHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS--EKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~--~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.+++|+|+   +++|.++++.+...|+ +|+.++++.  +..+.+ .+++.. +.+  |..+  .++..+.+.+... 
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~   82 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLPEPAPVLELDVTN--EEHLASLADRVREH   82 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcCCCCcEEeCCCCC--HHHHHHHHHHHHHH
Confidence            4679999985   6999999998888999 899988654  333333 334321 122  2222  1223333333222 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        83 ~g~iD~li~nAG~   95 (256)
T PRK07889         83 VDGLDGVVHSIGF   95 (256)
T ss_pred             cCCCcEEEEcccc
Confidence             389999998764

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=94.18  E-value=0.41  Score=42.95  Aligned_cols=59  Identities=20%  Similarity=0.208  Sum_probs=48.1

Q ss_pred             hhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC---ChhHHHHHHhcCCcEEEcCC
Q 020435          133 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKRFGVTEFVNSK  192 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~---~~~~~~~~~~~g~~~vi~~~  192 (326)
                      ....+.+|.++||-.. |++|..++.++...|. +++++..   +.|+...++.+|++.+....
T Consensus        96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~  158 (362)
T KOG1252|consen   96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIILTPP  158 (362)
T ss_pred             HcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEecCh
Confidence            3456889999999985 9999999999999999 8888875   55777788999987665433

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=94.17  E-value=0.63  Score=44.10  Aligned_cols=101  Identities=14%  Similarity=0.254  Sum_probs=62.4

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EEEcCCCCCCccHHHHHHHhc
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ....++++++||=.|+|+ |.....+++..+..+|++++.++++.+.+++    +|.. .++..+.   .+.    ....
T Consensus       238 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~---~~~----~~~~  309 (427)
T PRK10901        238 TLLAPQNGERVLDACAAP-GGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDA---RDP----AQWW  309 (427)
T ss_pred             HHcCCCCCCEEEEeCCCC-ChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc---ccc----hhhc
Confidence            445678899999998654 4444556655432389999999998777643    4532 3333322   111    1112


Q ss_pred             CC-CccEEE-E--cCCc-------------------------HHHHHHHHHHhhcCCcEEEEec
Q 020435          208 DG-GADYCF-E--CVGL-------------------------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ~~-g~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .. .+|.|+ |  |.+.                         ...+..+++.|+++ |+++..-
T Consensus       310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG-G~lvyst  372 (427)
T PRK10901        310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG-GTLLYAT  372 (427)
T ss_pred             ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            23 799998 4  3331                         13477888899998 9987543

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.17  E-value=0.59  Score=36.89  Aligned_cols=82  Identities=17%  Similarity=0.152  Sum_probs=58.5

Q ss_pred             hhhccc-CCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC
Q 020435          132 WRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       132 ~~~~~~-~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      .+.-++ -.|.+|+|+|. ..+|.-++.++...|+ .|+...+...                      ++.+.++     
T Consensus        19 l~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~~~t~----------------------~l~~~v~-----   70 (140)
T cd05212          19 LNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWKTI----------------------QLQSKVH-----   70 (140)
T ss_pred             HHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeCCCCc----------------------CHHHHHh-----
Confidence            344343 36999999996 7999999999999998 8888874321                      2222222     


Q ss_pred             CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          210 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       210 g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      .+|+|+.+.|.+..++.  +.++++ ..++.+|..
T Consensus        71 ~ADIVvsAtg~~~~i~~--~~ikpG-a~Vidvg~~  102 (140)
T cd05212          71 DADVVVVGSPKPEKVPT--EWIKPG-ATVINCSPT  102 (140)
T ss_pred             hCCEEEEecCCCCccCH--HHcCCC-CEEEEcCCC
Confidence            48999999998875554  459997 888877654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=94.15  E-value=0.8  Score=35.27  Aligned_cols=90  Identities=22%  Similarity=0.293  Sum_probs=48.5

Q ss_pred             EEEEEcc-CHHHHHHHHHHHH-cCCCEEEE-EcCChhH---HH--HHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccE
Q 020435          142 TVVIFGL-GSIGLAVAEGARL-CGATRIIG-VDVISEK---FE--IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  213 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~-~g~~~V~~-~~~~~~~---~~--~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~  213 (326)
                      +|.|+|+ |.+|..+++.+.. .+. ++++ +++.++.   .+  .+...+...+..+     .+    +.+... .+|+
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~-~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~-----~~----l~~~~~-~~DV   70 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGF-ELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT-----DD----LEELLE-EADV   70 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTE-EEEEEEETTTSTTTTSBCHHHCTSST-SSBEB-----S-----HHHHTT-H-SE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCc-EEEEEEecCCcccccchhhhhhCcCCcccccc-----hh----HHHhcc-cCCE
Confidence            6899998 9999999999988 677 5444 4444311   11  1111111111111     12    223333 3899


Q ss_pred             EEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          214 CFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       214 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++|+..... ....++.+... |.-+.+|.+
T Consensus        71 vIDfT~p~~-~~~~~~~~~~~-g~~~ViGTT   99 (124)
T PF01113_consen   71 VIDFTNPDA-VYDNLEYALKH-GVPLVIGTT   99 (124)
T ss_dssp             EEEES-HHH-HHHHHHHHHHH-T-EEEEE-S
T ss_pred             EEEcCChHH-hHHHHHHHHhC-CCCEEEECC
Confidence            999995444 55555555554 677777764

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=94.15  E-value=0.77  Score=41.35  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=30.3

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKF  177 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~~~~  177 (326)
                      .|.++||+|+   .+||.++++.+...|+ +|+. .+..+++
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~-~~~~~~l   47 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV-GTWVPAL   47 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE-EeCcchh
Confidence            5889999987   7999999999999999 8887 4444443

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.14  E-value=0.23  Score=43.99  Aligned_cols=70  Identities=20%  Similarity=0.092  Sum_probs=50.1

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEE
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      +...+.+++|.|+|+.+.+++..++..|+.+|+++.|++++.+.+.+ ++.+            +.+.+   ....+|+|
T Consensus       118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~------------~~~~~---~~~~~dlv  182 (272)
T PRK12550        118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE------------WRPDL---GGIEADIL  182 (272)
T ss_pred             CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc------------chhhc---ccccCCEE
Confidence            34455689999999999999999999998789999999988776543 4311            00011   01268999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      ++|...
T Consensus       183 INaTp~  188 (272)
T PRK12550        183 VNVTPI  188 (272)
T ss_pred             EECCcc
Confidence            998763

>PRK08223 hypothetical protein; Validated

Probab=94.10  E-value=0.87  Score=40.47  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=30.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ...+|+|.|+|++|..+++.+.+.|.+++..++.+
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            36799999999999999999999999888888854

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.08  E-value=0.54  Score=42.03  Aligned_cols=82  Identities=18%  Similarity=0.263  Sum_probs=60.1

Q ss_pred             hhhhccc-CCCCEEEEEc-cCHHHHHHHHHHHHcCCCEEEEEc-CChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhc
Q 020435          131 AWRTANV-EVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVD-VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       131 l~~~~~~-~~~~~vlI~G-ag~~G~~a~~la~~~g~~~V~~~~-~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      +++.-++ -.|.+|+|+| .+.+|.-++.++...|+ .|++.. +++                       ++.+.++   
T Consensus       148 ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~-----------------------~l~e~~~---  200 (296)
T PRK14188        148 LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR-----------------------DLPAVCR---  200 (296)
T ss_pred             HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC-----------------------CHHHHHh---
Confidence            3444443 3699999999 59999999999999998 888874 332                       1111111   


Q ss_pred             CCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          208 DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       208 ~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                        .+|+|+-|++.+..+...+  ++++ ..+|.+|..
T Consensus       201 --~ADIVIsavg~~~~v~~~~--lk~G-avVIDvGin  232 (296)
T PRK14188        201 --RADILVAAVGRPEMVKGDW--IKPG-ATVIDVGIN  232 (296)
T ss_pred             --cCCEEEEecCChhhcchhe--ecCC-CEEEEcCCc
Confidence              4899999999988666555  8997 889999864

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.08  E-value=0.46  Score=47.15  Aligned_cols=94  Identities=10%  Similarity=0.084  Sum_probs=66.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      .+.|+|.|.|.+|+.+++.++..|. ++++++.++++.+.+++.|...+. .+.    .-.+.+++.--+.+|.++-+.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~-GDa----t~~~~L~~agi~~A~~vv~~~~  473 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYY-GDA----TQLELLRAAGAEKAEAIVITCN  473 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEE-eeC----CCHHHHHhcCCccCCEEEEEeC
Confidence            3689999999999999999999998 899999999999999998864333 222    1122333332238999999999


Q ss_pred             cHHHHHHH---HHHhhcCCcEEEE
Q 020435          220 LASLVQEA---YACCRKGWGKTIV  240 (326)
Q Consensus       220 ~~~~~~~~---~~~l~~~~G~~v~  240 (326)
                      +...-...   .+...|+ -+++.
T Consensus       474 d~~~n~~i~~~~r~~~p~-~~Iia  496 (601)
T PRK03659        474 EPEDTMKIVELCQQHFPH-LHILA  496 (601)
T ss_pred             CHHHHHHHHHHHHHHCCC-CeEEE
Confidence            86633333   3444454 45544

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=94.07  E-value=0.41  Score=45.59  Aligned_cols=100  Identities=19%  Similarity=0.308  Sum_probs=60.9

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHH----hcCCcE--EEcCCCCCCccHHHHHHH
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGK----RFGVTE--FVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~----~~g~~~--vi~~~~~~~~~~~~~i~~  205 (326)
                      ....++++++||=.|+|+ |...+.+++.. +..+|++++.++++.+.++    ..|.+.  ++..+.   .++.+   .
T Consensus       244 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~---~  316 (444)
T PRK14902        244 PALDPKGGDTVLDACAAP-GGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDA---RKVHE---K  316 (444)
T ss_pred             HHhCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCc---ccccc---h
Confidence            345677899999887654 44444555554 2238999999999877664    356543  222221   11111   1


Q ss_pred             hcCCCccEEE-E--cCCc-------------------------HHHHHHHHHHhhcCCcEEEEe
Q 020435          206 MTDGGADYCF-E--CVGL-------------------------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       206 ~~~~g~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      + .+.+|.|+ |  |.|.                         ...+..+++.|+++ |+++..
T Consensus       317 ~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG-G~lvys  378 (444)
T PRK14902        317 F-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG-GILVYS  378 (444)
T ss_pred             h-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEE
Confidence            1 13799997 5  3332                         12467788999998 998743

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=94.05  E-value=0.37  Score=41.40  Aligned_cols=77  Identities=13%  Similarity=0.061  Sum_probs=47.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhc--CC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMT--DG  209 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~~  209 (326)
                      .++||+|+ |.+|..+++.+...|+ +|+++ .+++++.+..    +..+.. +++  |..+  .+.+.+.+.+..  .+
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~i~~~~~~~~~~~~   78 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGY-TVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISD--ENQVVAMFTAIDQHDE   78 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCC--HHHHHHHHHHHHHhCC
Confidence            37899987 9999999999988898 77764 5555544322    223322 222  2222  223333344332  23


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|+++.+.+.
T Consensus        79 ~id~vi~~ag~   89 (247)
T PRK09730         79 PLAALVNNAGI   89 (247)
T ss_pred             CCCEEEECCCC
Confidence            89999998884

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.05  E-value=0.35  Score=46.54  Aligned_cols=69  Identities=28%  Similarity=0.291  Sum_probs=48.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh-----HHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-----KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  213 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~-----~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~  213 (326)
                      .+.+|+|+|+|.+|+.++.+++..|. +|++++..+.     ..+.+++.|++.......   .         ...++|+
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~---~---------~~~~~D~   81 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGP---T---------LPEDTDL   81 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc---c---------ccCCCCE
Confidence            46799999999999999999999999 8999885542     123456677654433222   1         0115788


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      |+-+.|-
T Consensus        82 Vv~s~Gi   88 (480)
T PRK01438         82 VVTSPGW   88 (480)
T ss_pred             EEECCCc
Confidence            8877765

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.02  E-value=0.47  Score=44.02  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ...+|+|+|+|++|..+++.+...|.++++.++.+
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            36699999999999999999999998889888865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	326
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		3e-84
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		4e-80
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		1e-64
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		1e-64
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		1e-64
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		1e-63
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		2e-62
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-60
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-60
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		9e-60
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		2e-59
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		2e-59
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		2e-59
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		2e-59
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		3e-59
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		4e-59
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		4e-59
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		5e-59
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		6e-59
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		8e-59
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		1e-58
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		4e-57
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		5e-57
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		5e-57
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		6e-57
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		9e-56
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		3e-55
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		3e-55
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		3e-55
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		4e-54
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		1e-49
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		6e-27
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		1e-12
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		4e-11
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		4e-11
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		7e-11
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-10
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		4e-10
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		7e-10
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		1e-09
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		1e-09
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		2e-09
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		3e-09
3fpc_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-08
1y9a_A	360	Alcohol Dehydrogenase From Entamoeba Histolotica In		1e-08
2oui_A	360	D275p Mutant Of Alcohol Dehydrogenase From Protozoa		3e-08
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		5e-08
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		9e-08
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		1e-07
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		2e-07
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		2e-07
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		3e-07
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		4e-06
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		8e-06
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		2e-05
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		2e-05
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		2e-05
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		3e-05
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		4e-05
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		4e-05
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		6e-05
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		7e-05
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		2e-04
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		4e-04

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  308 bits (788), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 152/325 (46%), Positives = 217/325 (66%), Gaps = 10/325 (3%)
Query: 2   KDFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLC--- 58
           KD   +FP ILGHEA                    IP + A+C EC  C+S K NLC   
Sbjct: 56  KDPEGLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKV 115
Query: 59  -SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA 117
            SA    I   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ 
Sbjct: 116 RSATGVGI---MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKV 171
Query: 118 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 177
           CLL CGV TG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+
Sbjct: 172 CLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKY 231
Query: 178 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK 237
           E  K+FGV EFVN K+  DK + ++I+D+TDGG DY FEC+G  S+++ A  CC KGWG 
Sbjct: 232 ETAKKFGVNEFVNPKD-HDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGT 290
Query: 238 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT 297
           ++++GV   G ++S   F+++ +G++  G+ FGG K+++ +P L+++YM+KE+++D+++T
Sbjct: 291 SVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYIT 349
Query: 298 HEMKFEEINSAFDLLIKGKCLRCVI 322
           H +   EIN AFDLL +G CLRCV+
Sbjct: 350 HNLTLGEINKAFDLLHEGTCLRCVL 374

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  294 bits (753), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 144/324 (44%), Positives = 208/324 (64%), Gaps = 4/324 (1%)
Query: 2   KDFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF 61
           KD   +FP +LGHEA                    IP + A+C EC  C+S K NLC   
Sbjct: 74  KDPEGLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 133
Query: 62  PFKISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DP  P  + CLL
Sbjct: 134 RAATGVGVMMNDRKSRFS-INGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLL 192
Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
            CGV TG+GA W TA VE GS V +FGLG++GLAVAEGA+  GA+RIIG+D+ S+KF+  
Sbjct: 193 GCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRA 252
Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K FGVTEF+N K   ++ + Q+I+D+TDGG DY FEC+G  S+++ A  CC KGWG +++
Sbjct: 253 KNFGVTEFINPKE-HEQPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVI 311
Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           +GV   G ++S   F+++ +G++  G+ FGG K++S +P L+ +Y+ KE+++D+++TH M
Sbjct: 312 VGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNM 370
Query: 301 KFEEINSAFDLLIKGKCLRCVIWM 324
              +IN AFDL+  G CLR V+ M
Sbjct: 371 TLADINKAFDLMHDGDCLRVVLDM 394

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/320 (40%), Positives = 191/320 (59%), Gaps = 3/320 (0%)
Query: 3   DFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFP 62
           D    FP ILGHE                     IP ++  C EC  C + K NLC    
Sbjct: 56  DPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIR 115
Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                 +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL C
Sbjct: 116 VTQGKGLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGC 174
Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
           G+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K 
Sbjct: 175 GISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 234
Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
           FG TE +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+G
Sbjct: 235 FGATECINPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG 293
Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
           V   G +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F
Sbjct: 294 VAASGEEIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSF 352
Query: 303 EEINSAFDLLIKGKCLRCVI 322
           +EIN AF+L+  GK +R V+
Sbjct: 353 DEINKAFELMHSGKSIRTVV 372

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/320 (40%), Positives = 191/320 (59%), Gaps = 3/320 (0%)
Query: 3   DFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFP 62
           D    FP ILGHE                     IP ++  C EC  C + K NLC    
Sbjct: 56  DPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIR 115
Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                 +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL C
Sbjct: 116 VTQGKGLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGC 174
Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
           G+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K 
Sbjct: 175 GISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 234
Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
           FG TE +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+G
Sbjct: 235 FGATECINPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG 293
Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
           V   G +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F
Sbjct: 294 VAASGEEIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSF 352
Query: 303 EEINSAFDLLIKGKCLRCVI 322
           +EIN AF+L+  GK +R V+
Sbjct: 353 DEINKAFELMHSGKSIRTVV 372

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/320 (40%), Positives = 191/320 (59%), Gaps = 3/320 (0%)
Query: 3   DFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFP 62
           D    FP ILGHE                     IP ++  C EC  C + K NLC    
Sbjct: 55  DPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIR 114
Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                 +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL C
Sbjct: 115 VTQGKGLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGC 173
Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
           G+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K 
Sbjct: 174 GISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 233
Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
           FG TE +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+G
Sbjct: 234 FGATECINPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG 292
Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
           V   G +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F
Sbjct: 293 VAASGEEIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSF 351
Query: 303 EEINSAFDLLIKGKCLRCVI 322
           +EIN AF+L+  GK +R V+
Sbjct: 352 DEINKAFELMHSGKSIRTVV 371

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  239 bits (611), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 130/320 (40%), Positives = 190/320 (59%), Gaps = 3/320 (0%)
Query: 3   DFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFP 62
           D    FP ILGH                      IP ++  C EC  C + K NLC    
Sbjct: 55  DPEGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIR 114
Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                 +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL C
Sbjct: 115 VTQGKGLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGC 173
Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
           G+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K 
Sbjct: 174 GISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 233
Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
           FG TE +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+G
Sbjct: 234 FGATECINPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG 292
Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
           V   G +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F
Sbjct: 293 VAASGEEIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSF 351
Query: 303 EEINSAFDLLIKGKCLRCVI 322
           +EIN AF+L+  GK +R V+
Sbjct: 352 DEINKAFELMHSGKSIRTVV 371

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  235 bits (600), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 183/315 (58%), Gaps = 4/315 (1%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
           FP +LGHE                     IP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL CGVSTG
Sbjct: 122 DVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTG 180
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  K FG T+
Sbjct: 181 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
           FVN  N   + +SQ++  MT+GG D+  ECVG   +++ A   C KGWG ++++G     
Sbjct: 241 FVNP-NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL- 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             ++    +++ +G+   GS+FGG K K  +P ++K Y+DK+++LD+F+TH M  E +N 
Sbjct: 299 HDVATRPIQLI-AGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVND 357
Query: 308 AFDLLIKGKCLRCVI 322
           A DL+  GKC+R V+
Sbjct: 358 AIDLMKHGKCIRTVL 372

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/321 (38%), Positives = 182/321 (56%), Gaps = 12/321 (3%)
Query: 6   AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKI 65
           A  P I GHEA                    IP F+  C +C  C+  +GNLC       
Sbjct: 59  APLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK----- 113
Query: 66  SPWMPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
           +  MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ 
Sbjct: 114 NLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVG 172
Query: 122 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
           CG STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K
Sbjct: 173 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK 232
Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
             G TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++
Sbjct: 233 EVGATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIV 291
Query: 242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
           GV      LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + 
Sbjct: 292 GVPPDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLP 350
Query: 302 FEEINSAFDLLIKGKCLRCVI 322
           FE+IN  FDLL  GK +R ++
Sbjct: 351 FEKINEGFDLLRSGKSIRTIL 371

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/321 (38%), Positives = 182/321 (56%), Gaps = 12/321 (3%)
Query: 6   AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKI 65
           A  P I GHEA                    IP F+  C +C  C+  +GNLC       
Sbjct: 59  APLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK----- 113
Query: 66  SPWMPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
           +  MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ 
Sbjct: 114 NLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVG 172
Query: 122 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
           CG STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K
Sbjct: 173 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK 232
Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
             G TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++
Sbjct: 233 EVGATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIV 291
Query: 242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
           GV      LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + 
Sbjct: 292 GVPPDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLP 350
Query: 302 FEEINSAFDLLIKGKCLRCVI 322
           FE+IN  FDLL  GK +R ++
Sbjct: 351 FEKINEGFDLLRSGKSIRTIL 371

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  226 bits (577), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 177/315 (56%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 176/315 (55%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G +++ GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVITGVPPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  ++F   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  225 bits (574), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 176/315 (55%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G +++ GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVISGVPPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  225 bits (574), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 176/315 (55%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L SG+   G +FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGCIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 176/315 (55%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  224 bits (572), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 176/315 (55%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++ V    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVAVTPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  224 bits (572), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 182/315 (57%), Gaps = 4/315 (1%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
           FP I+GHEA                    IP FL  C EC  CR+  GNLC         
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGRG 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
            +  D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG
Sbjct: 121 VL-ADGTTRFT-CKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE     G TE
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE 238
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            ++ K+   K +S+++ +MT     Y FE +G    + +A A C   +G ++V+GV    
Sbjct: 239 CISPKD-STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSA 297
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             L+     +L +G+   G +FGGLK++ D+P L+  ++ K+ +LD+ +TH + F++I+ 
Sbjct: 298 KMLTYDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISE 356
Query: 308 AFDLLIKGKCLRCVI 322
            F+LL  G+ +R V+
Sbjct: 357 GFELLNSGQSIRTVL 371

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  224 bits (571), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 182/315 (57%), Gaps = 4/315 (1%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
           FP I+GHEA                    IP FL  C EC  CR+  GNLC         
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGRG 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
            +  D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG
Sbjct: 121 VL-ADGTTRFT-CKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE     G TE
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE 238
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            ++ K+   K +S+++ +MT     Y FE +G    + +A A C   +G ++V+GV    
Sbjct: 239 CISPKD-STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSA 297
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             L+     +L +G+   G +FGGLK++ D+P L+  ++ K+ +LD+ +TH + F++I+ 
Sbjct: 298 KMLTYDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISE 356
Query: 308 AFDLLIKGKCLRCVI 322
            F+LL  G+ +R V+
Sbjct: 357 GFELLNSGQSIRTVL 371

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  224 bits (571), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P I GHEA                    IP +   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  223 bits (569), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 176/315 (55%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P I GHEA                    IP     C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 176/315 (55%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P I GHEA                    IP +   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  218 bits (555), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 172/315 (54%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D T RF    G+ IHHFV VS+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRF-TCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A + A V  GST  +FGLG +GL+V  G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV    
Sbjct: 240 CINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGQLDTMMASLLCCHEACGTSVIVGVPPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L +G+   G++FGG K+K  +P L+  +M K+  LD  +T+ + FE+IN 
Sbjct: 299 QNLSINPM-LLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  GK +R V+
Sbjct: 358 GFDLLRSGKSIRTVL 372

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  218 bits (554), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 170/315 (53%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV    
Sbjct: 240 CINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPAS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  GK +R V+
Sbjct: 358 GFDLLHSGKSIRTVL 372

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  218 bits (554), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 170/315 (53%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV    
Sbjct: 240 CINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPAS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  GK +R V+
Sbjct: 358 GFDLLHSGKSIRTVL 372

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  217 bits (553), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 170/315 (53%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV    
Sbjct: 240 CINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPAS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  GK +R V+
Sbjct: 358 GFDLLHSGKSIRTVL 372

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  213 bits (543), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 115/315 (36%), Positives = 169/315 (53%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV    
Sbjct: 240 CINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPAS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  GK +  V+
Sbjct: 358 GFDLLHSGKSICTVL 372

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 121/321 (37%), Positives = 176/321 (54%), Gaps = 9/321 (2%)
Query: 6   AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF-PFK 64
           A+FP +LGHE                     IP F   C  C  C S   NLC     FK
Sbjct: 59  ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFK 118
Query: 65  ---ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
              I   +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ 
Sbjct: 119 YPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIG 177
Query: 122 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
           CG S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K
Sbjct: 178 CGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 237
Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
             G T+ +N +   DK V  +I ++T GG DY  +C G A  ++ A  C   GWG   V+
Sbjct: 238 ALGATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVV 296
Query: 242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
           G      ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + 
Sbjct: 297 GAKV--DEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALP 353
Query: 302 FEEINSAFDLLIKGKCLRCVI 322
           FE IN A DL+ +GK +R ++
Sbjct: 354 FESINDAIDLMKEGKSIRTIL 374

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 170/315 (53%), Gaps = 3/315 (0%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P ILGHEA                    IP  +  C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNPQ 120
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
              +D TSRF   R + IHHF+ +S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTSRFT-CRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 128 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 187
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 247
            +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV    
Sbjct: 240 CINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDS 298
Query: 248 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 307
             LS++   +L +G+   G++ GG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINE 357
Query: 308 AFDLLIKGKCLRCVI 322
            FDLL  GK +R ++
Sbjct: 358 GFDLLHSGKSIRTIL 372

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  211 bits (538), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 121/321 (37%), Positives = 176/321 (54%), Gaps = 9/321 (2%)
Query: 6   AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF-PFK 64
           A+FP +LGHE                     IP F   C  C  C S   NLC     FK
Sbjct: 59  ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFK 118
Query: 65  ---ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
              I   +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ 
Sbjct: 119 YPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIG 177
Query: 122 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
           CG S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K
Sbjct: 178 CGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 237
Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
             G T+ +N +   DK V  +I ++T GG DY  +C G A  ++ A  C   GWG   V+
Sbjct: 238 ALGATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVV 296
Query: 242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
           G      ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + 
Sbjct: 297 GAKV--DEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALP 353
Query: 302 FEEINSAFDLLIKGKCLRCVI 322
           FE IN A DL+ +GK +R ++
Sbjct: 354 FESINDAIDLMKEGKSIRTIL 374

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  207 bits (528), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/319 (36%), Positives = 173/319 (54%), Gaps = 7/319 (2%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
           FP I+GHEA                    IP +   C +C  C S   NLC       SP
Sbjct: 64  FPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSP 123
Query: 68  ----WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                +  D+TSRF   +G+ ++HF   S+FS+YTV+   ++ K+D      R CLL CG
Sbjct: 124 ASDQQLMEDKTSRFT-CKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCG 182
Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
            STG GAA   A V  GST  +FGLG +GL+   G +  GA+RIIG+D+ SEKF   K  
Sbjct: 183 FSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKAL 242
Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 243
           G T+ +N ++   K + ++II++T GG D+  +C G +  ++ A  C   GWG    +GV
Sbjct: 243 GATDCLNPRDL-HKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGV 301
Query: 244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 303
                 L++   E++  G+ + G+ FGG K+   IP L+  Y +K+  LD  VTH + F+
Sbjct: 302 AAGSKGLTVFPEELI-IGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFD 360
Query: 304 EINSAFDLLIKGKCLRCVI 322
           +I+ AFDL+ +GK +R ++
Sbjct: 361 KISEAFDLMNQGKSIRTIL 379

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/319 (35%), Positives = 169/319 (52%), Gaps = 5/319 (1%)
Query: 4   FPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPF 63
            P+ FP ILGHEA+                   IP F+  C  C  C+S   N C     
Sbjct: 58  IPSKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDM 117
Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ CG
Sbjct: 118 GAKTGLMADMTSRF-TCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPL-ESCLIGCG 175
Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 183
            +TG GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF      
Sbjct: 176 FATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 235
Query: 184 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 243
           G TE +N K+  DK + ++I + T+GG DY  EC G    +  A      G G T+VLG+
Sbjct: 236 GATECLNPKDY-DKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGL 294
Query: 244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 303
             P ++       +L +G+ L GS+FGG K + ++  L+  YM K++ ++  V+ ++  +
Sbjct: 295 ASP-NERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLD 352
Query: 304 EINSAFDLLIKGKCLRCVI 322
           +IN AF+LL  G+ +R ++
Sbjct: 353 QINKAFELLSSGQGVRSIM 371

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score =  117 bits (294), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 140/324 (43%), Gaps = 7/324 (2%)
Query: 2   KDFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF 61
           + +P   P +LGHE                     +  +   C +C  C +     CS F
Sbjct: 53  QKYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEF 111
Query: 62  -PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                S        +     +G    HF + SSF+ Y +    + VKV   VP      L
Sbjct: 112 FGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPL 171
Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
            CG+ TG GA      V   S+ V +G G++GL+    A++CGA+ II VD++  + E+ 
Sbjct: 172 GCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA 231
Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K+ G T  +NSK    +     I ++TDGG ++  E  G   ++++         GK  V
Sbjct: 232 KQLGATHVINSKT---QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGI-LGKIAV 287
Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           +G  Q G+       ++L  GK ++G + G    K  IP L++ Y   +   D+ V    
Sbjct: 288 VGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-Y 346
Query: 301 KFEEINSAFDLLIKGKCLRCVIWM 324
            F+EIN A     KG  L+ +I +
Sbjct: 347 AFDEINQAAIDSRKGITLKPIIKI 370

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 127/314 (40%), Gaps = 53/314 (16%)
Query: 3   DFPAVFPRILGHE--AIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSA 60
           +FP+  P  LGHE   I                    P+    C  C  C++ + NLC  
Sbjct: 70  EFPSTPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNI--SCGRCPQCQAGRVNLC-- 125
Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL- 119
                            ++LR   IH       F+EY ++      ++  T+ P      
Sbjct: 126 -----------------RNLRAIGIHRD---GGFAEYVLVPRKQAFEIPLTLDPVHGAFC 165
Query: 120 --LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 177
             L+C +          + ++ GSTV I G G IGL   + ARL GAT +I     + K 
Sbjct: 166 EPLACCLH-----GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKR 220
Query: 178 EIGKRFGVTEFVNSKNCGDKSVSQII---IDMTDGGADYCFECVGLASLVQEAYACCRKG 234
            + +  G T  V+  + GD  V + I   + +  GG D   EC G+A  V+++    + G
Sbjct: 221 RLAEEVGATATVD-PSAGD--VVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG 277
Query: 235 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD----KEL 290
            G  ++LGV   G ++ +  F++L     ++GS           P + +R  D      +
Sbjct: 278 -GTVVILGVLPQGEKVEIEPFDILFRELRVLGSFIN--------PFVHRRAADLVATGAI 328
Query: 291 ELDKFVTHEMKFEE 304
           E+D+ ++  +  +E
Sbjct: 329 EIDRXISRRISLDE 342

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 23/247 (9%)
Query: 76  RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 135
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 195
           ++E+G+TV + G+G +GL    GA+L GA RII V       +  K +G T+ VN K   
Sbjct: 163 DIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYK--- 219
Query: 196 DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 254
           D  +   I+++T+G G D      G A ++  A    + G G    +     G  L +  
Sbjct: 220 DGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLDVPR 278
Query: 255 FE----VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAF 309
            E    + H  K + G L  G + + +  I L  Y  K ++  K VTH  + F+ I  AF
Sbjct: 279 LEWGCGMAH--KTIKGGLCPGGRLRMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAF 334
Query: 310 DLLIKGK 316
            +L+K K
Sbjct: 335 -MLMKDK 340

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 22/243 (9%)
Query: 76  RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 135
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 195
           ++E+G+TV + G+G +GL    GA+L GA RII V       +  K +G T+ VN K   
Sbjct: 163 DIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYK--- 219
Query: 196 DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 254
           D  +   I+++T+G G D      G A ++  A    + G G    +     G  L +  
Sbjct: 220 DGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLPVPR 278
Query: 255 FE----VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAF 309
            E    + H  K + G L  G + + +  I L  Y  K ++  K VTH  + F+ I  AF
Sbjct: 279 LEWGCGMAH--KTIKGGLCPGGRLRMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAF 334
Query: 310 DLL 312
            L+
Sbjct: 335 MLM 337

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 18/219 (8%)
Query: 100 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 159
           +++AH+ K    +P   A ++   ++TG   A   A++E+GS+VV+ G+G++GL    GA
Sbjct: 131 MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGA 186
Query: 160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV 218
           +L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G D      
Sbjct: 187 KLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIVDQVMKLTNGKGVDRVIMAG 243
Query: 219 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL----HSGKILMGSLFGGLKA 274
           G +  + +A    + G    I+  ++  GS  +L    V      + K + G L  G + 
Sbjct: 244 GGSETLSQAVKMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRL 300
Query: 275 KSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 312
           + +  I L  Y  K ++  K VTH  + F+ I  AF L+
Sbjct: 301 RMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 18/219 (8%)
Query: 100 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 159
           +++AH+ K    +P   A ++   ++TG   A   A++++GS+VV+ G+G++GL    GA
Sbjct: 131 MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGA 186
Query: 160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV 218
           +L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G D      
Sbjct: 187 KLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIVDQVMKLTNGKGVDRVIMAG 243
Query: 219 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL----HSGKILMGSLFGGLKA 274
           G +  + +A +  + G    I+  ++  GS  +L    V      + K + G L  G + 
Sbjct: 244 GGSETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRL 300
Query: 275 KSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 312
           + +  I L  Y  K ++  K VTH  + F+ I  AF L+
Sbjct: 301 RMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 28/287 (9%)
Query: 44  CTECVGCR-SKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI 102
           C EC  C+ SK+  LC   P +    + R   S +  LRG           +S + VLD 
Sbjct: 112 CGECYWCKVSKEPYLC---PNRKVYGINRG-CSEYPHLRG----------CYSSHIVLDP 157
Query: 103 -AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL 161
              V+KV      +   +  C  +T   A         G TVVI G G +GL     AR 
Sbjct: 158 ETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARS 217
Query: 162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL 220
            GA  +I +     + ++ +  G    +N +    +   + I+D+T G GAD+  E  G 
Sbjct: 218 LGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGD 277
Query: 221 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPI 280
           +  + E     R+G G   V GV  P   +    +E L    +L  + F G+   SD   
Sbjct: 278 SRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWL----VLKNATFKGIWV-SDTSH 331
Query: 281 LLKRY----MDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW 323
            +K       + +L L K +TH +  +E N A +L+   + L+ +++
Sbjct: 332 FVKTVSITSRNYQL-LSKLITHRLPLKEANKALELMESREALKVILY 377

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 18/231 (7%)
Query: 94  FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 151
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+G+TV + G+G +
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIELGATVAVLGIGPV 178
Query: 152 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 210
           GL    GA+L GA RII V       +  K +G T+ VN K   D  +   I+++T+G G
Sbjct: 179 GLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYK---DGPIESQIMNLTEGKG 235
Query: 211 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE----VLHSGKILMG 266
            D      G A ++  A    + G G    +     G  L +   E    + H  K + G
Sbjct: 236 VDAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLPVPRLEWGCGMAH--KTIKG 292
Query: 267 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 316
            L  G + +++  +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 293 GLCPGGRLRAE--MLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 18/231 (7%)
Query: 94  FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 151
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++++GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAV 178
Query: 152 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 210
           GL    GA+L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIVDQVMKLTNGKG 235
Query: 211 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL----HSGKILMG 266
            D      G +  + +A +  + G    I+  ++  GS  +L    V      + K + G
Sbjct: 236 VDRVIMAGGGSETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKG 292
Query: 267 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 316
            L  G + +++  +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 293 GLCPGGRLRAE--MLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 18/231 (7%)
Query: 94  FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 151
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++++GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAV 178
Query: 152 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 210
           GL    GA+L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIVDQVMKLTNGKG 235
Query: 211 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL----HSGKILMG 266
            D      G +  + +A +  + G    I+  ++  GS  +L    V      + K + G
Sbjct: 236 VDRVIMAGGGSETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKG 292
Query: 267 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 316
            L  G + +++  +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 293 GLCPGGRLRAE--MLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 18/231 (7%)
Query: 94  FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 151
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAV 178
Query: 152 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 210
           GL    GA+L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIEDQVMKLTNGKG 235
Query: 211 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL----HSGKILMG 266
            D      G +  + +A    + G    I+  ++  GS  +L    V      + K + G
Sbjct: 236 VDRVIMAGGGSETLSQAVKMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKG 292
Query: 267 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 316
            L  G + +++   L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 293 GLCPGGRLRAE--RLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 15/224 (6%)
Query: 94  FSEYTVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG 152
           F+EY V D   V  +   +  N  A +L  GV+  V    +  + + G  VVI G+G +G
Sbjct: 145 FAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT--VYKGLKVTDTKPGDWVVISGIGGLG 202
Query: 153 LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 212
               + AR  G   +  VD+   K ++ +R G T  VN+K   D +    I   TDGGA 
Sbjct: 203 HMAVQYARAMG-LNVAAVDIDDRKLDLARRLGATVTVNAKTVADPAA--YIRKETDGGAQ 259
Query: 213 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL 272
                       ++A     +  G T+ L    PG    LS F ++ +G  + GS+ G  
Sbjct: 260 GVLVTAVSPKAFEQALGMVAR--GGTVSLNGLPPGD-FPLSIFNMVLNGVTVRGSIVG-- 314
Query: 273 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 316
             + D+   L    D ++   K      K E+IN+ FD + +G 
Sbjct: 315 -TRLDLQESLDFAADGKV---KATIQTGKLEDINAIFDDMRQGN 354

>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 102/221 (46%), Gaps = 15/221 (6%)
Query: 100 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 159
           +++AH+ K    +P   A ++   ++TG   A   AN+++G TV + G+G +GL    GA
Sbjct: 131 MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGA 186
Query: 160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV 218
              GA RI  V       +I   +G T+ +N KN GD  + + I+  TDG G D      
Sbjct: 187 NHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN-GD--IVEQILKATDGKGVDKVVIAG 243
Query: 219 GLASLVQEAYACCRKG--WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS 276
           G      +A    + G   G    LG +     +  S + V    K + G L  G + + 
Sbjct: 244 GDVHTFAQAVKMIKPGSDIGNVNYLG-EGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRM 302
Query: 277 DIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 316
           +  I L  Y  K ++  K VTH  + F+ I  AF +L+K K
Sbjct: 303 ERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAF-MLMKDK 340

>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 103/236 (43%), Gaps = 19/236 (8%)
Query: 92  SSFSEYTVLDIAHVVKVDPT-------VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVV 144
           S+F +    ++ HV + D         + P  A +LS  V+TG   A   AN+++G TV 
Sbjct: 113 SNFKDGVFSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGA-ELANIKLGDTVC 171
Query: 145 IFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIII 204
           + G+G +GL    GA   GA RI  V       +I   +G T+ +N KN GD  + + I+
Sbjct: 172 VIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN-GD--IVEQIL 228
Query: 205 DMTDG-GADYCFECVGLASLVQEAYACCRKG--WGKTIVLGVDQPGSQLSLSSFEVLHSG 261
             TDG G D      G      +A    + G   G    LG +     +  S + V    
Sbjct: 229 KATDGKGVDKVVIAGGXVHTFAQAVKMIKPGSDIGNVNYLG-EGDNIDIPRSEWGVGMGH 287
Query: 262 KILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 316
           K + G L  G + +  +  L       +L+  K +TH  +  E++  A  +L+K K
Sbjct: 288 KHIHGGLTPGGRVR--MEKLASLISTGKLDTSKLITHRFEGLEKVEDAL-MLMKNK 340

>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 103/236 (43%), Gaps = 19/236 (8%)
Query: 92  SSFSEYTVLDIAHVVKVDPT-------VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVV 144
           S+F +    ++ HV + D         + P  A +LS  V+TG   A   AN+++G TV 
Sbjct: 113 SNFKDGVFSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGA-ELANIKLGDTVC 171
Query: 145 IFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIII 204
           + G+G +GL    GA   GA RI  V       +I   +G T+ +N KN GD  + + I+
Sbjct: 172 VIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN-GD--IVEQIL 228
Query: 205 DMTDG-GADYCFECVGLASLVQEAYACCRKG--WGKTIVLGVDQPGSQLSLSSFEVLHSG 261
             TDG G D      G      +A    + G   G    LG +     +  S + V    
Sbjct: 229 KATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLG-EGDNIPIPRSEWGVGMGH 287
Query: 262 KILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 316
           K + G L  G + +  +  L       +L+  K +TH  +  E++  A  +L+K K
Sbjct: 288 KHIHGGLTPGGRVR--MEKLASLISTGKLDTSKLITHRFEGLEKVEDAL-MLMKNK 340

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 19/225 (8%)
Query: 94  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG 152
           ++EY      +VVK+   +    A  + C GV+T    A +    + G  V I+G+G +G
Sbjct: 120 YAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY--KALKVTGAKPGEWVAIYGIGGLG 177
Query: 153 LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS-KNCGDKSVSQIIIDMTDGGA 211
               + A+  G   ++ VD+  EK E+ K  G    VN  K    K + + +     GG 
Sbjct: 178 HVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV-----GGV 231
Query: 212 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG 271
                        Q AY   R+G G  +++G+  P  ++ +  F+ + +G  ++GS+ G 
Sbjct: 232 HAAVVTAVSKPAFQSAYNSIRRG-GACVLVGL--PPEEMPIPIFDTVLNGIKIIGSIVG- 287
Query: 272 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 316
              + D+   L+   + ++   K +      E+IN  FD ++KG+
Sbjct: 288 --TRKDLQEALQFAAEGKV---KTIIEVQPLEKINEVFDRMLKGQ 327

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 19/225 (8%)
Query: 94  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG 152
           ++EY      +VVK+   +    A  + C GV+T    A +    + G  V I+G+G  G
Sbjct: 120 YAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY--KALKVTGAKPGEWVAIYGIGGFG 177
Query: 153 LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS-KNCGDKSVSQIIIDMTDGGA 211
               + A+  G   ++ VD+  EK E+ K  G    VN  K    K + + +     GG 
Sbjct: 178 HVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV-----GGV 231
Query: 212 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG 271
                        Q AY   R+G G  +++G+  P  ++ +  F+ + +G  ++GS+ G 
Sbjct: 232 HAAVVTAVSKPAFQSAYNSIRRG-GACVLVGL--PPEEMPIPIFDTVLNGIKIIGSIVG- 287
Query: 272 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 316
              + D+   L+   + ++   K +      E+IN  FD ++KG+
Sbjct: 288 --TRKDLQEALQFAAEGKV---KTIIEVQPLEKINEVFDRMLKGQ 327

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 18/226 (7%)
Query: 94  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG 152
            +E  ++   + VKV   + P  A  ++C GV+T    A + + V+ G   VIFG G +G
Sbjct: 119 MAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQVIFGAGGLG 176
Query: 153 -LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 210
            LA+     + GA ++I VD+  +K  + K+ G    +NS   GD +    I  +T G G
Sbjct: 177 NLAIQYAKNVFGA-KVIAVDINQDKLNLAKKIGADVTINS---GDVNPVDEIKKITGGLG 232
Query: 211 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 270
                 C  +A +  E      K  GK + + V  P ++++LS   V+  G  + GSL G
Sbjct: 233 VQSAIVC-AVARIAFEQAVASLKPMGKMVAVAV--PNTEMTLSVPTVVFDGVEVAGSLVG 289
Query: 271 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 316
               + D+    +   + ++   K +    K EEIN   D +  GK
Sbjct: 290 ---TRLDLAEAFQFGAEGKV---KPIVATRKLEEINDIIDEMKAGK 329

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 18/226 (7%)
Query: 94  FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG 152
            +E  ++   + VKV   + P  A  ++C GV+T    A + + V+ G   VIFG G +G
Sbjct: 119 MAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQVIFGAGGLG 176
Query: 153 -LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 210
            LA+     + GA ++I VD+  +K  + K+ G    +NS   GD +    I  +T G G
Sbjct: 177 NLAIQYAKNVFGA-KVIAVDINQDKLNLAKKIGADVIINS---GDVNPVDEIKKITGGLG 232
Query: 211 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 270
                 C  +A +  E      K  GK + + +  P ++++LS   V+  G  + GSL G
Sbjct: 233 VQSAIVC-AVARIAFEQAVASLKPMGKMVAVAL--PNTEMTLSVPTVVFDGVEVAGSLVG 289
Query: 271 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 316
               + D+    +   + ++   K +    K EEIN   D +  GK
Sbjct: 290 ---TRLDLAEAFQFGAEGKV---KPIVATRKLEEINDIIDEMKAGK 329

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 7/192 (3%)
Query: 131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 190
           A R A V +G+ V++ G G IGL     A+  GA +++  D+ + +    K  G    + 
Sbjct: 162 ACRRAGVTLGNKVLVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILE 221
Query: 191 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 250
             N   + +++ +  +     +   EC G+ + +Q        G G  +++G+   GS+ 
Sbjct: 222 ISNESPEEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSG-GTLVLVGL---GSE- 276
Query: 251 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 310
            ++S  ++H+    +  + G  +  +  P+ +     K + +   VTH    E+   AF+
Sbjct: 277 -MTSVPLVHAATREV-DIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPLEKALEAFE 334
Query: 311 LLIKGKCLRCVI 322
              KG  L+ +I
Sbjct: 335 TSKKGLGLKVMI 346

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 117/312 (37%), Gaps = 33/312 (10%)
Query: 1   MKDFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSA 60
           + DF    P ++GHEA                           C  C  C+  K NLC  
Sbjct: 53  IADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPD 112
Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
             F  +P  P D         G    ++V  + F            K+   V      LL
Sbjct: 113 LTFCATP--PDD---------GNLARYYVHAADFCH----------KLPDNVSLEEGALL 151
Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
              +S GV  A R A V++G+TV++ G G IGL     A+  GA  ++       + E+ 
Sbjct: 152 E-PLSVGV-HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVA 208
Query: 181 KRFG--VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT 238
           K  G  VT  V+     + S+ + I        +   +C G    +       R G G  
Sbjct: 209 KNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTL 267
Query: 239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH 298
           +++G+   GSQ+         + +I + S+F   +  +D PI L+        + + VTH
Sbjct: 268 MLVGM---GSQMVTVPLVNACAREIDIKSVF---RYCNDYPIALEMVASGRCNVKQLVTH 321
Query: 299 EMKFEEINSAFD 310
             K E+   AF+
Sbjct: 322 SFKLEQTVDAFE 333

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
Query: 131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 190
           A R   V +G  V++ G G IG+     A+  GA +++  D+ + +    K  G    + 
Sbjct: 163 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQ 222
Query: 191 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 250
                 + +++ +        +   EC G  + +Q      R G G  +++G+   GS+ 
Sbjct: 223 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGL---GSE- 277
Query: 251 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 310
            +++  +LH+  I    + G  +  +  P+ +     K + +   VTH    E+   AF+
Sbjct: 278 -MTTVPLLHAA-IREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFE 335
Query: 311 LLIKGKCLRCVI 322
              KG  L+ ++
Sbjct: 336 TFKKGLGLKIML 347

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 19/225 (8%)
Query: 94  FSEYTVLDIAHVVKVDPTVP-PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG 152
           ++EY + D  +V  +   V     A +L  GV+   G   +  N   G  V I G+G +G
Sbjct: 126 YAEYVLADPNYVGILPKNVEFAEIAPILCAGVTVYKG--LKQTNARPGQWVAISGIGGLG 183
Query: 153 LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 212
               + AR  G   +  +D+   K E+ ++ G +  VN++   +  V  I  D+  GGA 
Sbjct: 184 HVAVQYARAMG-LHVAAIDIDDAKLELARKLGASLTVNARQ--EDPVEAIQRDI--GGAH 238
Query: 213 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL 272
                    S   +A    R+  G TI L V  P        F+V+  G  + GS+ G  
Sbjct: 239 GVLVTAVSNSAFGQAIGMARR--GGTIAL-VGLPPGDFPTPIFDVVLKGLHIAGSIVG-- 293
Query: 273 KAKSDIPILLKRYMDKELE-LDKFVTHEMKFEEINSAFDLLIKGK 316
             ++D    L+  +D   E L K   H  K ++IN   D +  G+
Sbjct: 294 -TRAD----LQEALDFAGEGLVKATIHPGKLDDINQILDQMRAGQ 333

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 16/232 (6%)
Query: 94  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGLGSI 151
           F+EY V+   ++ K   ++PP  A L        +G A  T  A    G +V+I G G +
Sbjct: 124 FAEYAVVPAQNIWKNPKSIPPEYATL-----QEPLGNAVDTVLAGPISGKSVLITGAGPL 178
Query: 152 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 210
           GL     A+  GA  +I  +    + E+ K+ G    +N     ++ V + + D+TDG G
Sbjct: 179 GLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPF---EEDVVKEVXDITDGNG 235
Query: 211 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 270
            D   E  G    +++         G+  +LG+  PG ++++  F  L   K L      
Sbjct: 236 VDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGL-YPG-KVTI-DFNNLIIFKALTIYGIT 291
Query: 271 GLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKCLRCV 321
           G         + +     +L LD  +TH+ K F++   AF+L   GK  + V
Sbjct: 292 GRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELXRAGKTGKVV 343

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 16/232 (6%)
Query: 94  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGLGSI 151
           F+EY V+   ++ K   ++PP  A L        +G A  T  A    G +V+I G G +
Sbjct: 125 FAEYAVVPAQNIWKNPKSIPPEYATL-----QEPLGNAVDTVLAGPISGKSVLITGAGPL 179
Query: 152 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 210
           GL     A+  GA  +I  +    + E+ K+ G    +N     ++ V + + D+TDG G
Sbjct: 180 GLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPF---EEDVVKEVXDITDGNG 236
Query: 211 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 270
            D   E  G    +++         G+  +LG+  PG ++++  F  L   K L      
Sbjct: 237 VDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGL-YPG-KVTI-DFNNLIIFKALTIYGIT 292
Query: 271 GLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKCLRCV 321
           G         + +     +L LD  +TH+ K F++   AF+L   GK  + V
Sbjct: 293 GRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELXRAGKTGKVV 344

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 93/230 (40%), Gaps = 29/230 (12%)
Query: 94  FSEYTVLDIAHVVKVDPTVPPNR------ACLLSCGVSTGVGAAWRTANVEVGSTVVIFG 147
           + EY V D  +V      + P++      A +L  GV+  V    +  +   G  VVI G
Sbjct: 122 YGEYVVADPNYV-----GLLPDKVGFVEIAPILCAGVT--VYKGLKVTDTRPGQWVVISG 174
Query: 148 LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT 207
           +G +G    + AR  G  R+  VD+   K  + +R G    VN+++    +  Q  I   
Sbjct: 175 IGGLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEI--- 230
Query: 208 DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS 267
            GGA              +A    R+  G TI L    PG       F+V+  G  + GS
Sbjct: 231 -GGAHGVLVTAVSPKAFSQAIGMVRR--GGTIALNGLPPGD-FGTPIFDVVLKGITIRGS 286
Query: 268 LFGGLKAKSDIPILLKRYMDKELELD-KFVTHEMKFEEINSAFDLLIKGK 316
           + G    +SD    L+  +D     D K      K +++N  F  L +GK
Sbjct: 287 IVG---TRSD----LQESLDFAAHGDVKATVSTAKLDDVNDVFGRLREGK 329

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 125/325 (38%), Gaps = 50/325 (15%)
Query: 8   FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P  LGHE +                   I H       C+ CR+ +   C    F   P
Sbjct: 73  LPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---P 129
Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR----ACLLSCG 123
            +  D                     F+E+       V+K+   +   +    A L   G
Sbjct: 130 GLNID-------------------GGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAG 170
Query: 124 VST--GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
           ++    V  A RT  +  G+ V I G+G +G    +  ++     +I +DV  EK ++ +
Sbjct: 171 ITAYRAVKKAART--LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE 228
Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQ-EAYACCRKGWGKTI 239
           R G    V+++    K V    +++T G G +   + VG  + V    Y   R   G+ I
Sbjct: 229 RLGADHVVDARRDPVKQV----MELTRGRGVNVAMDFVGSQATVDYTPYLLGR--MGRLI 282
Query: 240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG-LKAKSDIPILLKRYMDKELELDKFVTH 298
           ++G    G +L   +  V+ S     GSL G  ++    + + L+  +  E+++      
Sbjct: 283 IVGY---GGELRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGKVRVEVDIH----- 334
Query: 299 EMKFEEINSAFDLLIKGKCL-RCVI 322
             K +EIN   + L KG+ L R V+
Sbjct: 335 --KLDEINDVLERLEKGEVLGRAVL 357

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 78/189 (41%), Gaps = 7/189 (3%)
Query: 131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 190
           A R   V +G  V++ G G IG      A+  GA +++  D+ + +    K  G    + 
Sbjct: 163 ACRRGGVTLGHKVLVCGAGPIGXVTLLVAKAXGAAQVVVTDLSATRLSKAKEIGADLVLQ 222
Query: 191 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 250
                 + +++ +        +   EC G  + +Q      R G G  +++G+   GS+ 
Sbjct: 223 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGL---GSEX 278
Query: 251 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 310
           +  +  +LH+  I    + G  +  +  P+ +     K + +   VTH    E+   AF+
Sbjct: 279 T--TVPLLHAA-IREVDIKGVFRYCNTWPVAISXLASKSVNVKPLVTHRFPLEKALEAFE 335
Query: 311 LLIKGKCLR 319
              KG  L+
Sbjct: 336 TFKKGLGLK 344

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 36/232 (15%)
Query: 94  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 153
           F+EY V+   +V  +   +P      +   ++ G+ A       E    V+I G G+IGL
Sbjct: 117 FAEYIVVKRKNVFALPTDMPIEDGAFIE-PITVGLHAFHLAQGCE-NKNVIIIGAGTIGL 174
Query: 154 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY 213
              + A   GA  +  +D+ SEK  + K FG  +  NS       +  ++ ++       
Sbjct: 175 LAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELR------ 228
Query: 214 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 273
                    L+ E       G  +T+ L V+  G    L+    LH    L  + FG + 
Sbjct: 229 ------FNQLILET-----AGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKIL 277
Query: 274 AK-----------------SDIPILLKRYMDKELELDKFVTHEMKFEEINSA 308
            K                  +     +   +++L L+  + H   FE    A
Sbjct: 278 RKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQA 329

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 23/186 (12%)
Query: 44  CTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA 103
           C  C  C   + N C+                R  DL G T     S  S +EY ++D A
Sbjct: 92  CGACHACARGRENYCT----------------RAADL-GITPPGLGSPGSMAEYMIVDSA 134
Query: 104 -HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLC 162
            H+V +    P   A L   G++     +     +  GST V+ G+G +G    +  R  
Sbjct: 135 RHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAV 194
Query: 163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA 221
            A R+I VD+  ++  + +  G    V S        +  I ++T G GA   F+ VG  
Sbjct: 195 SAARVIAVDLDDDRLALAREVGADAAVKSG----AGAADAIRELTGGQGATAVFDFVGAQ 250
Query: 222 SLVQEA 227
           S +  A
Sbjct: 251 STIDTA 256

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Query: 117 ACLLSC-GVSTGVGAAWRTANVEVGSTVVIFG----LGSIGLAVAEGARLCGATRIIGVD 171
           A  L+C GV+T    A R A+++   T+V+ G    LG++ + +A+   + GAT IIGVD
Sbjct: 149 AAPLTCSGVTTY--RAVRKASLDPSKTLVVIGAGGGLGTMAIQIAKA--VSGAT-IIGVD 203
Query: 172 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 231
           V  E  E  KR G    +N+ +     VS+I       GAD   + +  +      Y   
Sbjct: 204 VREEALEAAKRAGADYVINASS--QDPVSEIRRITQGKGADAVID-LNNSEKTLSIYPYV 260
Query: 232 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE 291
               GK +++G+   G+ L   +  +  +    +GSL G    +SD   ++   + +  +
Sbjct: 261 LAKQGKYVMVGLF--GADLKYHAPLITLNEVQFIGSLVGN---QSDFLGIMS--LAEAGK 313
Query: 292 LDKFVTHEMKFEEINSAFDLL 312
           +   VT  MK EE N A D L
Sbjct: 314 VKPMVTKTMKLEEANEAIDNL 334

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 88/229 (38%), Gaps = 11/229 (4%)
Query: 94  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 153
            SEY VL     V    ++    A  L C   T   A     ++  G  VV+ G G + L
Sbjct: 144 LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVAL 203
Query: 154 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY 213
              + A+  GA  I+      EK +     G    +N     +  V ++     D GAD+
Sbjct: 204 FGLQIAKATGAEVIV-TSSSREKLDRAFALGADHGIN--RLEEDWVERVYALTGDRGADH 260
Query: 214 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 273
             E  G A L Q   A      G+  V+GV + G ++S     +L    ++ G   G  +
Sbjct: 261 ILEIAGGAGLGQSLKAVAPD--GRISVIGVLE-GFEVSGPVGPLLLKSPVVQGISVGHRR 317
Query: 274 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 322
           A  D+   + R     L L   +    KF E+  A   L +G   + VI
Sbjct: 318 ALEDLVGAVDR-----LGLKPVIDXRYKFTEVPEALAHLDRGPFGKVVI 361

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 22/237 (9%)
Query: 94  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGLGSI 151
           F+ Y ++   +  K    +PP  A L        +G A  T  A    G + +I G G +
Sbjct: 125 FAHYAIVPAKNAWKNPKDMPPEYAAL-----QEPLGNAVDTVLAGPIAGRSTLITGAGPL 179
Query: 152 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 210
           GL     A+  GA  +I  +    + ++ K+ G    VN     ++   + ++D+TDG G
Sbjct: 180 GLLGIAVAKASGAYPVIVSEPSEFRRKLAKKVGADYVVNPF---EEDPVKFVMDITDGAG 236
Query: 211 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS---FEVLHSGKILMGS 267
            +   E  G    +++       G G+  +LG+      +  ++   F+ L    I    
Sbjct: 237 VEVFLEFSGAPKALEQGLKAVTPG-GRVSLLGLFPREVTIDFNNLIIFKALEVHGITGRH 295
Query: 268 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKCLRCVIW 323
           L+      S +          +L LD  +TH+ K F++   AF+L+  GK  + V +
Sbjct: 296 LWETWYTVSSL------IQSGKLNLDPIITHKYKGFDKFEEAFELMRAGKTGKVVFF 346

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-165
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-161
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-161
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-158
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-157
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-131
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-110
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	5e-62
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	4e-56
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	4e-51
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-49
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	1e-47
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	2e-47
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	9e-47
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	9e-46
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	2e-45
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	4e-45
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	2e-43
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	5e-43
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-42
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	2e-40
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	1e-38
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	9e-37
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	1e-36
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	9e-30
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	4e-29
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	8e-29
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	5e-19
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	1e-18
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-18
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	3e-18
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	2e-14
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	3e-14
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	6e-14
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	5e-13
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	6e-13
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	2e-12
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	4e-12
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	5e-12
3gms_A	340	Putative NADPH:quinone reductase; structural genom	6e-11
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	1e-09
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	1e-09
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	2e-09
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	3e-09
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	9e-09
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	5e-08
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-07
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	2e-07
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	6e-05
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	7e-05
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	1e-04
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-04
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-04
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	4e-04
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	4e-04

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  464 bits (1196), Expect = e-165
 Identities = 141/324 (43%), Positives = 204/324 (62%), Gaps = 3/324 (0%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
             D    FP ILGH   G+VESVGE V  +  GD VIP ++  C EC  C + K NLC  
Sbjct: 53  GADPEGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQK 112

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                   +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL
Sbjct: 113 IRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLL 171

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
            CG+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   
Sbjct: 172 GCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARA 231

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K FG TE +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V
Sbjct: 232 KEFGATECINPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVV 290

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           +GV   G +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH +
Sbjct: 291 VGVAASGEEIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNL 349

Query: 301 KFEEINSAFDLLIKGKCLRCVIWM 324
            F+EIN AF+L+  GK +R V+ +
Sbjct: 350 SFDEINKAFELMHSGKSIRTVVKI 373

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  454 bits (1170), Expect = e-161
 Identities = 129/320 (40%), Positives = 190/320 (59%), Gaps = 3/320 (0%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP 62
                 P I GHEA G+VES+GE V  V  GD VIP F   C +C  C+  +GN C    
Sbjct: 56  TLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKND 115

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
             +     +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ C
Sbjct: 116 LSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGC 174

Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
           G STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K 
Sbjct: 175 GFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE 234

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
            G TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++G
Sbjct: 235 VGATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVG 293

Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
           V      LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + F
Sbjct: 294 VPPDSQNLSMNPMLLL-SGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPF 352

Query: 303 EEINSAFDLLIKGKCLRCVI 322
           E+IN  FDLL  G+ +R ++
Sbjct: 353 EKINEGFDLLRSGESIRTIL 372

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  453 bits (1168), Expect = e-161
 Identities = 134/324 (41%), Positives = 195/324 (60%), Gaps = 4/324 (1%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
                  FP +LGHE  G+VESVG  V     G+ VIP F++ C EC  C+S K N C  
Sbjct: 55  EGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVK 114

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                SP +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL
Sbjct: 115 GWANESPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLL 173

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
            CGVSTG GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  
Sbjct: 174 GCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA 233

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 240
           K FG T+FVN  +   + +SQ++  MT+GG D+  ECVG   +++ A   C KGWG +++
Sbjct: 234 KVFGATDFVNPNDH-SEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVL 292

Query: 241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 300
           +G       ++    +++ +G+   GS+FGG K K  +P ++K Y+DK+++LD+F+TH M
Sbjct: 293 VGWT-DLHDVATRPIQLI-AGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRM 350

Query: 301 KFEEINSAFDLLIKGKCLRCVIWM 324
             E +N A DL+  GKC+R V+ +
Sbjct: 351 PLESVNDAIDLMKHGKCIRTVLSL 374

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  445 bits (1148), Expect = e-158
 Identities = 129/324 (39%), Positives = 185/324 (57%), Gaps = 9/324 (2%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP 62
              A+FP +LGHE  G+VESVG  V     GD VIP F   C  C  C S   NLC    
Sbjct: 56  KKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLR 115

Query: 63  FKISPW----MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 118
               P     +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R C
Sbjct: 116 NFKYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVC 174

Query: 119 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 178
           L+ CG S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF 
Sbjct: 175 LIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFP 234

Query: 179 IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT 238
             K  G T+ +N +   DK V  +I ++T GG DY  +C G A  ++ A  C   GWG  
Sbjct: 235 KAKALGATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSC 293

Query: 239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH 298
            V+G      ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH
Sbjct: 294 TVVGA--KVDEMTIPTVDVI-LGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTH 350

Query: 299 EMKFEEINSAFDLLIKGKCLRCVI 322
            + FE IN A DL+ +GK +R ++
Sbjct: 351 ALPFESINDAIDLMKEGKSIRTIL 374

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  442 bits (1140), Expect = e-157
 Identities = 126/320 (39%), Positives = 182/320 (56%), Gaps = 5/320 (1%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP 62
             P+ FP ILGHEA+GVVES+G  V  V  GD VIP F+  C  C  C+S   N C    
Sbjct: 57  IIPSKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKND 116

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                 +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ C
Sbjct: 117 MGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGC 174

Query: 123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
           G +TG GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF     
Sbjct: 175 GFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 234

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
            G TE +N K+  DK + ++I + T+GG DY  EC G    +  A      G G T+VLG
Sbjct: 235 LGATECLNPKDY-DKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLG 293

Query: 243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 302
           +  P  +L L    +L +G+ L GS+FGG K + ++  L+  YM K++ ++  V+ ++  
Sbjct: 294 LASPNERLPLDPLLLL-TGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTL 351

Query: 303 EEINSAFDLLIKGKCLRCVI 322
           ++IN AF+LL  G+ +R ++
Sbjct: 352 DQINKAFELLSSGQGVRSIM 371

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  376 bits (968), Expect = e-131
 Identities = 94/324 (29%), Positives = 150/324 (46%), Gaps = 7/324 (2%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP 62
            +P   P +LGHE  G++E++G NV  +  GD V+  +   C +C  C +     CS F 
Sbjct: 54  KYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFF 112

Query: 63  FKISPWMPRDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
            +       +               HF + SSF+ Y +    + VKV   VP      L 
Sbjct: 113 GRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLG 172

Query: 122 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
           CG+ TG GA      V   S+ V +G G++GL+    A++CGA+ II VD++  + E+ K
Sbjct: 173 CGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 232

Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
           + G T  +NSK    +     I ++TDGG ++  E  G   ++++         GK  V+
Sbjct: 233 QLGATHVINSK---TQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVV 288

Query: 242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
           G  Q G+       ++L  GK ++G + G    K  IP L++ Y   +   D+ V     
Sbjct: 289 GAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YA 347

Query: 302 FEEINSAFDLLIKGKCLRCVIWMG 325
           F+EIN A     KG  L+ +I + 
Sbjct: 348 FDEINQAAIDSRKGITLKPIIKIA 371

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  324 bits (834), Expect = e-110
 Identities = 77/332 (23%), Positives = 126/332 (37%), Gaps = 27/332 (8%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDG-----VVEGDVVIPHFLADCTECVGCRSKKGN 56
           +D     P ILGHE  G V  V           +  GD+++ +    C EC  C+  K  
Sbjct: 65  EDPRVPLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEP 124

Query: 57  LCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPN 115
                       + R   S +  LRG           +S + VLD    V+KV      +
Sbjct: 125 YLCPNRKVYG--INRG-CSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLD 171

Query: 116 RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 175
              +  C  +T   A         G TVVI G G +GL     AR  GA  +I +     
Sbjct: 172 VLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN 231

Query: 176 KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKG 234
           + ++ +  G    +N +    +   + I+D+T G GAD+  E  G +  + E     R+G
Sbjct: 232 RLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG 291

Query: 235 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS--DIPILLKRYMDKELEL 292
            G   V GV  P   +       ++   +L  + F G+           +         L
Sbjct: 292 -GFYSVAGVAVPQDPVPFK----VYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLL 346

Query: 293 DKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM 324
            K +TH +  +E N A +L+   + L+ +++ 
Sbjct: 347 SKLITHRLPLKEANKALELMESREALKVILYP 378

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  200 bits (510), Expect = 5e-62
 Identities = 71/324 (21%), Positives = 121/324 (37%), Gaps = 33/324 (10%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
             +    P  LGHE +G V  +GE V G   GD V  +    C  C  C   + N C+  
Sbjct: 50  AQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRA 109

Query: 62  PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
                               G T     S  S +EY ++D A  +     + P  A  L+
Sbjct: 110 -----------------ADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLT 152

Query: 122 C-GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
             G++     +     +  GST V+ G+G +G    +  R   A R+I VD+  ++  + 
Sbjct: 153 DAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALA 212

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTI 239
           +  G    V S        +  I ++T G GA   F+ VG  S +  A        G   
Sbjct: 213 REVGADAAVKS----GAGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHIS 267

Query: 240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHE 299
           V+G+       +   F ++  G  ++   +G      ++  ++       L++    T  
Sbjct: 268 VVGI--HAGAHAKVGFFMIPFGASVVTPYWGTRS---ELMEVVALARAGRLDI---HTET 319

Query: 300 MKFEEINSAFDLLIKGKCL-RCVI 322
              +E  +A+  L +G    R V+
Sbjct: 320 FTLDEGPAAYRRLREGSIRGRGVV 343

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  185 bits (472), Expect = 4e-56
 Identities = 71/328 (21%), Positives = 127/328 (38%), Gaps = 45/328 (13%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSA 60
           +FP+  P  LGHE  G+V   G  V  +  G      P+    C  C  C++ + NLC  
Sbjct: 70  EFPSTPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNIS--CGRCPQCQAGRVNLC-- 125

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRA 117
                            ++LR       + +     F+EY ++      ++  T+ P   
Sbjct: 126 -----------------RNLR------AIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHG 162

Query: 118 CL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 174
                L+C +          + ++ GSTV I G G IGL   + ARL GAT +I     +
Sbjct: 163 AFCEPLACCL-----HGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQA 217

Query: 175 EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 234
            K  + +  G T  V+             + +  GG D   EC G+A  V+++    + G
Sbjct: 218 TKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG 277

Query: 235 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDK 294
            G  ++LGV   G ++ +  F++L     ++GS F                    +E+D+
Sbjct: 278 -GTVVILGVLPQGEKVEIEPFDILFRELRVLGS-FI---NPFVHRRAADLVATGAIEIDR 332

Query: 295 FVTHEMKFEEINSAFDLLIKGKCLRCVI 322
            ++  +  +E             ++ ++
Sbjct: 333 MISRRISLDEAPDVISNPAAAGEVKVLV 360

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  171 bits (436), Expect = 4e-51
 Identities = 69/324 (21%), Positives = 121/324 (37%), Gaps = 42/324 (12%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCS 59
           K+    +P  LGHE  G +++VG  VD +  GD    +P     C  C  C     + C+
Sbjct: 47  KNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLP--CFTCPECLKGFYSQCA 104

Query: 60  AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL 119
            + F  S    RD         G           F+EY V+   +V  +   +P      
Sbjct: 105 KYDFIGSR---RD---------G----------GFAEYIVVKRKNVFALPTDMPIEDGAF 142

Query: 120 ---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 176
              ++ G+      A+  A       V+I G G+IGL   + A   GA  +  +D+ SEK
Sbjct: 143 IEPITVGL-----HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEK 197

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW 235
             + K FG  +  NS    + S  Q+   + +        E  G+   V+ A        
Sbjct: 198 LALAKSFGAMQTFNSS---EMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH- 253

Query: 236 GKTIVLGVDQPGSQLSLSSFE-VLHSGKILMGSL--FGGLKAKSDIPILLKRYMDKELEL 292
            +  ++G       L+ ++F  +L     ++GS   +       +     +   +++L L
Sbjct: 254 AQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSL 313

Query: 293 DKFVTHEMKFEEINSAFDLLIKGK 316
           +  + H   FE    A   + +  
Sbjct: 314 EPLIAHRGSFESFAQAVRDIARNA 337

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  168 bits (427), Expect = 1e-49
 Identities = 72/324 (22%), Positives = 130/324 (40%), Gaps = 42/324 (12%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
               P  LGHE +G +E V E V+G+ +GD VI H       C+ CR+ +   C    F 
Sbjct: 70  QPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFP 129

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR---ACLLS 121
                            G  I        F+E+       V+K+   +   +      L+
Sbjct: 130 -----------------GLNID-----GGFAEFMRTSHRSVIKLPKDISREKLVEMAPLA 167

Query: 122 CGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 180
               T   A  +    +  G+ V I G+G +G    +  ++     +I +DV  EK ++ 
Sbjct: 168 DAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA 227

Query: 181 KRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTI 239
           +R G    V+++    +   + ++++T G G +   + VG  + V        +  G+ I
Sbjct: 228 ERLGADHVVDAR----RDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLI 282

Query: 240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHE 299
           ++G    G +L   +  V+ S     GSL G      ++  L+   +  ++ +       
Sbjct: 283 IVGY---GGELRFPTIRVISSEVSFEGSLVGNYV---ELHELVTLALQGKVRV---EVDI 333

Query: 300 MKFEEINSAFDLLIKGKCL-RCVI 322
            K +EIN   + L KG+ L R V+
Sbjct: 334 HKLDEINDVLERLEKGEVLGRAVL 357

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  162 bits (413), Expect = 1e-47
 Identities = 65/328 (19%), Positives = 114/328 (34%), Gaps = 48/328 (14%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVI--PHFLADCTECVGCRSKKGNLCSA 60
                 P + GHE  GVVE+VG  V     GD V    H +  C  C  CR+   ++C  
Sbjct: 52  RGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIV--CHACPACRTGNYHVC-- 107

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRA 117
                             + +       + V     F+EY V+   +       +P   A
Sbjct: 108 -----------------LNTQ------ILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVA 144

Query: 118 CL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 174
            +       V           +   G +V+I G G IGL  A   R  GA  I+  D   
Sbjct: 145 AILEPFGNAV-----HTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNP 199

Query: 175 EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 234
            +    + +     VN     ++ + +++  +T  G +   E  G  + + +       G
Sbjct: 200 YRLAFARPYA-DRLVNPL---EEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG 255

Query: 235 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDK 294
            G+  +LG+     +  L+  E++  G    G    G +                ++L  
Sbjct: 256 -GEARILGIPSDPIRFDLAG-ELVMRGITAFGIA--GRRLWQTWMQGTALVYSGRVDLSP 311

Query: 295 FVTHEMKFEEINSAFDLLIKGKCLRCVI 322
            +TH +       AF LL  G+ ++ ++
Sbjct: 312 LLTHRLPLSRYREAFGLLASGQAVKVIL 339

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  161 bits (411), Expect = 2e-47
 Identities = 73/330 (22%), Positives = 125/330 (37%), Gaps = 50/330 (15%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSA 60
                 P+I+GHE  G V  +G  V+G+  GD   V  H +  C +C  CR  + ++C  
Sbjct: 56  QSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIV--CGKCYACRRGQYHVCQN 113

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRA 117
                                         V     F+EY V+   ++ K   ++PP  A
Sbjct: 114 -------------------------TKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYA 148

Query: 118 CL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 174
            L   L   V               G +V+I G G +GL     A+  GA  +I  +   
Sbjct: 149 TLQEPLGNAVD----TVLAG--PISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSD 202

Query: 175 EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRK 233
            + E+ K+ G    +N        V + ++D+TDG G D   E  G    +++       
Sbjct: 203 FRRELAKKVGADYVINPFEE---DVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTP 259

Query: 234 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELD 293
             G+  +LG+      +  ++  ++     + G    G         + +     +L LD
Sbjct: 260 A-GRVSLLGLYPGKVTIDFNNL-IIFKALTIYGIT--GRHLWETWYTVSRLLQSGKLNLD 315

Query: 294 KFVTHEMK-FEEINSAFDLLIKGKCLRCVI 322
             +TH+ K F++   AF+L+  GK  + V 
Sbjct: 316 PIITHKYKGFDKYEEAFELMRAGKTGKVVF 345

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  161 bits (410), Expect = 9e-47
 Identities = 64/342 (18%), Positives = 106/342 (30%), Gaps = 60/342 (17%)

Query: 5   PAVFPRILGHEAIGVVESVGENV------DGVVEGD--VVIPHFLADCTECVGCRSKKGN 56
              FP  LGHE  GVV   G              G+           C  C  C     N
Sbjct: 88  LTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLW--CGHCRPCAEGFPN 145

Query: 57  LCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKV----- 108
            C                            + +  +   +F+EY  +D  +   +     
Sbjct: 146 HCEN-------------------------LNELGFNVDGAFAEYVKVDAKYAWSLRELEG 180

Query: 109 --DPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG 163
             +         L    S   +       R   +  G  VVI G G IGLA     +  G
Sbjct: 181 VYEGDRLFLAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAG 237

Query: 164 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLAS 222
           A+++I  +    +  + K  G    ++       +  + ++D T+G GA    E  G+  
Sbjct: 238 ASKVILSEPSEVRRNLAKELGADHVIDPTKE---NFVEAVLDYTNGLGAKLFLEATGVPQ 294

Query: 223 LVQEA--YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPI 280
           LV         R       V  V +  +++ L+          ++GS   G       P 
Sbjct: 295 LVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQ--GHSGHGTFPR 352

Query: 281 LLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 322
           ++   M   +++ K ++  +  EEI      L   K L  V 
Sbjct: 353 VI-SLMASGMDMTKIISKTVSMEEIPEYIKRLQTDKSLVKVT 393

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  157 bits (400), Expect = 9e-46
 Identities = 74/319 (23%), Positives = 114/319 (35%), Gaps = 44/319 (13%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPF 63
                 ILGHEA+G V  VG  V     GD VV+P  +         +            
Sbjct: 50  GERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVP-AITPDWRTSEVQRGYHQHSG---- 104

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV-------VKVDPTVPPNR 116
                           +        V    F E+      HV         +   +P   
Sbjct: 105 ---------------GMLAGWKFSNVKDGVFGEF-----FHVNDADMNLAHLPKEIPLEA 144

Query: 117 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 176
           A ++   ++TG   A   AN+++G TV + G+G +GL    GA   GA RI  V      
Sbjct: 145 AVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHC 203

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW 235
            +I   +G T+ +N K   +  + + I+  TDG G D      G      +A    + G 
Sbjct: 204 CDIALEYGATDIINYK---NGDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG- 259

Query: 236 GKTIVLGVDQPGSQLSL--SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELD 293
                +     G  + +  S + V    K + G L  G +    +  L+     K ++  
Sbjct: 260 SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRL--RMERLIDLVFYKRVDPS 317

Query: 294 KFVTHEMK-FEEINSAFDL 311
           K VTH  + F+ I  AF L
Sbjct: 318 KLVTHVFRGFDNIEKAFML 336

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  156 bits (398), Expect = 2e-45
 Identities = 66/324 (20%), Positives = 115/324 (35%), Gaps = 38/324 (11%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP 62
           +F    P +LGHEA G VE VG +V  +  GD V     A       C+  + NL  +  
Sbjct: 58  NFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIF 117

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--- 119
           F  +P  P D                        +   + A   K+   V      L   
Sbjct: 118 FCATP--PDDGN-------------------LCRFYKHNAAFCYKLPDNVTFEEGALIEP 156

Query: 120 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 179
           LS G+      A R   V +G  V++ G G IG+     A+  GA +++  D+ + +   
Sbjct: 157 LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 211

Query: 180 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI 239
            K  G    +       + +++ +        +   EC G  + +Q      R G G  +
Sbjct: 212 AKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLV 270

Query: 240 VLGVDQPGSQLSLSSFEVLHSGKILMGSL-FGGLKAKSDIPILLKRYMDKELELDKFVTH 298
           ++G+       ++           + G   +         P+ +     K + +   VTH
Sbjct: 271 LVGL--GSEMTTVPLLHAAIREVDIKGVFRYCN-----TWPVAISMLASKSVNVKPLVTH 323

Query: 299 EMKFEEINSAFDLLIKGKCLRCVI 322
               E+   AF+   KG  L+ ++
Sbjct: 324 RFPLEKALEAFETFKKGLGLKIML 347

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  156 bits (396), Expect = 4e-45
 Identities = 78/328 (23%), Positives = 134/328 (40%), Gaps = 43/328 (13%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           ++D     P  LGHE  G +E VG+ V G  +GD+V  +       C  CR  + +LC +
Sbjct: 55  VEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDS 114

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
             +                  G          +++EY ++     +     +    A  L
Sbjct: 115 PRWL-----------------GINFD-----GAYAEYVIVPHYKYMYKLRRLNAVEAAPL 152

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIF----GLGSIGLAVAEGARLCGATRIIGVDVISEK 176
           +C   T   A  R A+++   T+++     GLG++ + +A    + GA  IIGVDV  E 
Sbjct: 153 TCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIA--KAVSGA-TIIGVDVREEA 208

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW 235
            E  KR G    +N+     +     I  +T+  G D   +       +        K  
Sbjct: 209 VEAAKRAGADYVINAS---MQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ- 264

Query: 236 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF 295
           GK +++G+   G+ L   +  +  S    +GSL G    +SD   +++  + +  ++   
Sbjct: 265 GKYVMVGL--FGADLHYHAPLITLSEIQFVGSLVG---NQSDFLGIMR--LAEAGKVKPM 317

Query: 296 VTHEMKFEEINSAFDLLIKGKCL-RCVI 322
           +T  MK EE N A D L   K + R V+
Sbjct: 318 ITKTMKLEEANEAIDNLENFKAIGRQVL 345

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  151 bits (384), Expect = 2e-43
 Identities = 72/328 (21%), Positives = 128/328 (39%), Gaps = 43/328 (13%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
                   P ILGHE  G +  VGE +  V +GD V+ +       C  CR  K N+C  
Sbjct: 52  EAKQGFRLPIILGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKN 110

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                            + + G+T +       FSEY ++  +  +    ++ P  A  L
Sbjct: 111 -----------------QIIPGQTTN-----GGFSEYMLVKSSRWLVKLNSLSPVEAAPL 148

Query: 121 SCGVSTGVGA---AWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEK 176
           +   +T +GA   A    +      V++ G+G +    +     L     I+G+    + 
Sbjct: 149 ADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKH 208

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW 235
            +     G       K+        +I  +TDG GA    + VG             +  
Sbjct: 209 RDFALELGADYVSEMKD-----AESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE- 262

Query: 236 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF 295
           G  I++G+   G ++SL +F+     K L+GS +G L    D+  +++     +++    
Sbjct: 263 GAIILVGM--EGKRVSLEAFDTAVWNKKLLGSNYGSLN---DLEDVVRLSESGKIKP--- 314

Query: 296 VTHEMKFEEINSAFDLLIKGKCL-RCVI 322
              ++  ++IN AF  L +G+   R VI
Sbjct: 315 YIIKVPLDDINKAFTNLDEGRVDGRQVI 342

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  150 bits (382), Expect = 5e-43
 Identities = 65/323 (20%), Positives = 111/323 (34%), Gaps = 45/323 (13%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGD-VVI-PHFLADCTECVGCRSKKGNLCSA 60
                   +LGHE+ G V +V  +V  +  GD V I P  +  C  C  C + + N C  
Sbjct: 67  PMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVI--CNACEPCLTGRYNGCER 124

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL- 119
             F  +P +P           G              Y         K+   +      + 
Sbjct: 125 VDFLSTPPVP-----------G----------LLRRYVNHPAVWCHKI-GNMSYENGAML 162

Query: 120 --LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 177
             LS  +     A  + A V +G  V+I G G IGL     A+  GA  ++  D+   + 
Sbjct: 163 EPLSVAL-----AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRL 217

Query: 178 EIGKRFGVTEFVNSKNCGD-KSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW 235
           +  K        +       +  ++ I++   G       EC G+ S +  A    + G 
Sbjct: 218 KFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG- 276

Query: 236 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL-FGGLKAKSDIPILLKRYMDKELELDK 294
           GK  V+GV    +++ +           L     +         P  ++   +  ++L +
Sbjct: 277 GKVFVIGV--GKNEIQIPFMRASVREVDLQFQYRYCN-----TWPRAIRLVENGLVDLTR 329

Query: 295 FVTHEMKFEEINSAFDLLIKGKC 317
            VTH    E+   AF+     K 
Sbjct: 330 LVTHRFPLEDALKAFETASDPKT 352

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  149 bits (379), Expect = 1e-42
 Identities = 77/320 (24%), Positives = 117/320 (36%), Gaps = 41/320 (12%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP 62
           DF    P ++GHEA G V  VG+NV  + +GD V       C  C  C+  K NLC    
Sbjct: 55  DFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLT 114

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--- 119
           F  +P  P D                      + Y V       K+   V      L   
Sbjct: 115 FCATP--PDDGN-------------------LARYYVHAADFCHKLPDNVSLEEGALLEP 153

Query: 120 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 179
           LS GV      A R A V++G+TV++ G G IGL     A+  GA  ++       + E+
Sbjct: 154 LSVGV-----HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEV 207

Query: 180 GKRFG--VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK 237
            K  G  VT  V+     + S+ + I        +   +C G    +       R G G 
Sbjct: 208 AKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GT 266

Query: 238 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSL-FGGLKAKSDIPILLKRYMDKELELDKFV 296
            +++G+      +++           +     +       D PI L+        + + V
Sbjct: 267 LMLVGM--GSQMVTVPLVNACAREIDIKSVFRYCN-----DYPIALEMVASGRCNVKQLV 319

Query: 297 THEMKFEEINSAFDLLIKGK 316
           TH  K E+   AF+   K  
Sbjct: 320 THSFKLEQTVDAFEAARKKA 339

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  143 bits (364), Expect = 2e-40
 Identities = 52/321 (16%), Positives = 101/321 (31%), Gaps = 43/321 (13%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSA 60
                   +LGHEA+GVV  V  N   + EGD  V                  + ++   
Sbjct: 52  FPEGEDHLVLGHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPD 109

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL- 119
             +     +            G            SE+      ++V++  +       + 
Sbjct: 110 GMYFERGIVGAH---------G----------YMSEFFTSPEKYLVRIPRSQAELGFLIE 150

Query: 120 -LSCGV-STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL--CGATRIIGV---DV 172
            +S    +     A R+A     S+  + G GS+GL      ++   G   +  +   D 
Sbjct: 151 PISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDR 210

Query: 173 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 232
                +I +    T   + +        + + D+     D+ +E  G      ++     
Sbjct: 211 PDPTIDIIEELDATYVDSRQT-----PVEDVPDVY-EQMDFIYEATGFPKHAIQSVQALA 264

Query: 233 KGWGKTIVLGVDQPGS---QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 289
              G   +LGV    +          E++   K L+GS+   ++      +   +    +
Sbjct: 265 PN-GVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVEHFEAATVTFTK--LPK 321

Query: 290 LELDKFVTHEMKFEEINSAFD 310
             L+  VT      E  +AFD
Sbjct: 322 WFLEDLVTGVHPLSEFEAAFD 342

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  139 bits (351), Expect = 1e-38
 Identities = 58/334 (17%), Positives = 102/334 (30%), Gaps = 45/334 (13%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
                 +LGHEAIGVVE   E+  G  +GD+V+P     C  C  C   + + C    F 
Sbjct: 57  KGKDFLVLGHEAIGVVE---ESYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFG 113

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--LSC 122
            +     D         G             E+   D  ++VK+  ++         L+ 
Sbjct: 114 EAGIHKMD---------G----------FMREWWYDDPKYLVKIPKSIEDIGILAQPLAD 154

Query: 123 GV---------STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 173
                         V              V++ G G IG+      R  G    +     
Sbjct: 155 IEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE 214

Query: 174 SEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL-ASLVQEAYACC 231
             + E          + NS N  DK      +  + G  D   +  G   +++       
Sbjct: 215 PTEVEQTVIEETKTNYYNSSNGYDK------LKDSVGKFDVIIDATGADVNILGNVIPLL 268

Query: 232 RKGWGKTIVLGVDQPGSQ--LSLSSFEVLHSGKILMGSLFGGLKA-KSDIPILLKRYMDK 288
            +  G   + G    GS      +  E++H+ K ++G + G     +  +  L       
Sbjct: 269 GRN-GVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLY 327

Query: 289 ELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 322
                  +T  +   +      +L + +     I
Sbjct: 328 PKAAKMLITKTVSINDEKELLKVLREKEHGEIKI 361

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  135 bits (341), Expect = 9e-37
 Identities = 70/351 (19%), Positives = 114/351 (32%), Gaps = 52/351 (14%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPF 63
            A    +LGHE  G V   G +V+ +  GD V +P F   C  C  C+     +C     
Sbjct: 58  TAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVP-FNVACGRCRSCKEMHTGVCL---- 112

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVS-SFSEYTVLDIAHV--VKVDPTVPPNRAC-- 118
                      +R     G         +   +EY ++  A    +K+            
Sbjct: 113 -------TVNPARAGGAYGYV--DMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRD 163

Query: 119 --LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 176
              LS  + TG   A  TA V  GSTV + G G +GLA A  ARL GA  +I  D+   +
Sbjct: 164 LTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR 222

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL--------------- 220
               K  G      S    D  + + I  +      D   + VG                
Sbjct: 223 LAHAKAQGFEIADLSL---DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAP 279

Query: 221 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG-GLK------ 273
           A+++       R   GK  + G+       ++ +   + S  I  G  +           
Sbjct: 280 ATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT 338

Query: 274 -AKSDIPILLKRYMDKELELDK-FVTHEMKFEEINSAFDLLIKGKCLRCVI 322
                   L++  M   + + +      +  ++    +     G   + VI
Sbjct: 339 PVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVPKKFVI 389

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  134 bits (340), Expect = 1e-36
 Identities = 64/353 (18%), Positives = 113/353 (32%), Gaps = 51/353 (14%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAF 61
            F      +LGHE  G V   G +V+ +  GD V +P F   C  C  C+  + ++C   
Sbjct: 55  RFIVPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVP-FNVACGRCRNCKEARSDVCEN- 112

Query: 62  PFKISPWMPRDQTSRFKDLRGETIHHF-------VSVSSFSEYTVLDIAHVVKVDPTVPP 114
               +   P      F    G  +  +       V V  +++Y +L      K       
Sbjct: 113 ----NLVNPDADLGAF----GFDLKGWSGGQAEYVLVP-YADYMLLKFGD--KEQAMEKI 161

Query: 115 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 174
               L+S  + TG      +A V+ GS V I G G +G   A GARL GA  +I  D   
Sbjct: 162 KDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNP 220

Query: 175 EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL------------- 220
           E+ ++    G              +   I  +      D   + VG              
Sbjct: 221 ERLKLLSDAGFETIDLRN---SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTET 277

Query: 221 -ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG-GLK----- 273
               +   +   R G G   + G+        ++         +  G ++   ++     
Sbjct: 278 PNGALNSLFDVVRAG-GAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGM 336

Query: 274 --AKSDIPILLKRYMDKELEL--DKFVTHEMKFEEINSAFDLLIKGKCLRCVI 322
               +    L +  +  ++           +  ++    +    KG   + VI
Sbjct: 337 APVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSPAKFVI 389

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  114 bits (289), Expect = 9e-30
 Identities = 77/334 (23%), Positives = 117/334 (35%), Gaps = 65/334 (19%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFP 62
                P I GHE +G V +VG  V  V EGD V +P   + C  C  C      LC    
Sbjct: 53  VKPTLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLC---- 108

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                   + Q +      G +++       + EY V D  +V  +   V       + C
Sbjct: 109 -------EKQQNT------GYSVN-----GGYGEYVVADPNYVGLLPDKVGFVEIAPILC 150

Query: 123 -GVSTGVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISEK 176
            GV+       +  +   G  VVI G+G +G      A A G       R+  VD+   K
Sbjct: 151 AGVTV--YKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL------RVAAVDIDDAK 202

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG 236
             + +R G    VN++   D   +  +     GGA              +A    R+G G
Sbjct: 203 LNLARRLGAEVAVNAR---DTDPAAWLQKEI-GGAHGVLVTAVSPKAFSQAIGMVRRG-G 257

Query: 237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFV 296
              + G+  P        F+V+  G  + GS+ G                D +  LD   
Sbjct: 258 TIALNGL--PPGDFGTPIFDVVLKGITIRGSIVGTRS-------------DLQESLDFAA 302

Query: 297 TH-------EMKFEEINSAFDLLIKGKCL-RCVI 322
                      K +++N  F  L +GK   R V+
Sbjct: 303 HGDVKATVSTAKLDDVNDVFGRLREGKVEGRVVL 336

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  113 bits (285), Expect = 4e-29
 Identities = 79/338 (23%), Positives = 131/338 (38%), Gaps = 65/338 (19%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFP 62
                P I GHE +G+VE VG  V  +  GD V IP   + C  C  C S +  LC    
Sbjct: 51  VKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC---- 106

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                     + +      G ++        ++EY      +VVK+   +    A  + C
Sbjct: 107 -------EHQKNA------GYSVD-----GGYAEYCRAAADYVVKIPDNLSFEEAAPIFC 148

Query: 123 -GVSTGVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISEK 176
            GV+T    A +    + G  V I+G+G +G      A A G        ++ VD+  EK
Sbjct: 149 AGVTTY--KALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLN------VVAVDIGDEK 200

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG 236
            E+ K  G    VN      +  ++ + +   GG              Q AY   R+G G
Sbjct: 201 LELAKELGADLVVNPL---KEDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-G 255

Query: 237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFV 296
             +++G+  P  ++ +  F+ + +G  ++GS+ G  K             D +  L    
Sbjct: 256 ACVLVGL--PPEEMPIPIFDTVLNGIKIIGSIVGTRK-------------DLQEALQFAA 300

Query: 297 TH-------EMKFEEINSAFDLLIKGKCL-RCVIWMGE 326
                        E+IN  FD ++KG+   R V+ + +
Sbjct: 301 EGKVKTIIEVQPLEKINEVFDRMLKGQINGRVVLTLED 338

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  112 bits (283), Expect = 8e-29
 Identities = 72/337 (21%), Positives = 118/337 (35%), Gaps = 67/337 (19%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFP 62
            P   P + GHE  GVV  +GENV G   GD   I      C  C  C     + C    
Sbjct: 56  LPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNC---- 111

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                  P    S      G T        SF +Y   D      +       +   + C
Sbjct: 112 -------PHADLS------GYTHD-----GSFQQYATADAVQAAHIPQGTDLAQVAPILC 153

Query: 123 -GVSTGVGAAWRTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVISE 175
            G++     A ++AN+  G  V I     GLGS+    A A G R      ++G+D    
Sbjct: 154 AGITVY--KALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYR------VLGIDGGEG 205

Query: 176 KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW 235
           K E+ +  G   F++     D  +   ++  TDGGA          + ++ +    R   
Sbjct: 206 KEELFRSIGGEVFIDFTKEKD--IVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRAN- 262

Query: 236 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE--LD 293
           G T+++G+   G++     F  +     ++GS  G                  +    LD
Sbjct: 263 GTTVLVGMP-AGAKCCSDVFNQVVKSISIVGSYVGNR---------------ADTREALD 306

Query: 294 KFVTH------EM-KFEEINSAFDLLIKGKCL-RCVI 322
            F         ++     +   ++ + KG+ + R V+
Sbjct: 307 FFARGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVV 343

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 85.4 bits (212), Expect = 5e-19
 Identities = 65/319 (20%), Positives = 105/319 (32%), Gaps = 56/319 (17%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
               FP +   +  GVVE+VG++V     GD VI  F     + +   + +         
Sbjct: 79  LDLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYET--- 135

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                                          SEY VL     V    ++    A  L C 
Sbjct: 136 ---LGGAHPGV-------------------LSEYVVLPEGWFVAAPKSLDAAEASTLPCA 173

Query: 124 VSTGVGAAWR----TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII--GVDVISEKF 177
             T    AW       ++  G  VV+ G G + L   + A+  GA  I+        EK 
Sbjct: 174 GLT----AWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSR---EKL 226

Query: 178 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWG 236
           +     G    +N     ++   + +  +T   GAD+  E  G A L Q +        G
Sbjct: 227 DRAFALGADHGINRL---EEDWVERVYALTGDRGADHILEIAGGAGLGQ-SLKAVAPD-G 281

Query: 237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF- 295
           +  V+GV   G ++S     +L    ++ G   G  +A  D        +   ++     
Sbjct: 282 RISVIGV-LEGFEVSGPVGPLLLKSPVVQGISVGHRRALED--------LVGAVDRLGLK 332

Query: 296 --VTHEMKFEEINSAFDLL 312
             +    KF E+  A   L
Sbjct: 333 PVIDMRYKFTEVPEALAHL 351

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 85.2 bits (211), Expect = 1e-18
 Identities = 58/340 (17%), Positives = 107/340 (31%), Gaps = 61/340 (17%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           +     +   ++G +  GVV   G  V+    GD V+ H L+   E     +        
Sbjct: 110 LAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHND------- 162

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                +   P  +   F+   G            +E  ++    ++     +    A   
Sbjct: 163 -----TMLDPEQRIWGFETNFG----------GLAEIALVKSNQLMPKPDHLSWEEAAAP 207

Query: 121 SCGVSTGVGAAWR------TANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVI 173
               ST    A+R       A ++ G  V+I+G    +G    + A   GA  I    V+
Sbjct: 208 GLVNST----AYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPIC---VV 260

Query: 174 S--EKFEIGKRFGVTEFVNSKNCGDKSVSQI--------------IIDMTDG-GADYCFE 216
           S  +K EI +  G    ++    G +                   I ++T G   D  FE
Sbjct: 261 SSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFE 320

Query: 217 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS 276
             G  +    +    RKG G          G      +  +  S K ++GS F   +   
Sbjct: 321 HPGRETFGA-SVFVTRKG-GTITTCAS-TSGYMHEYDNRYLWMSLKRIIGSHFANYREAW 377

Query: 277 DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 316
           +      R +  +  +   ++     E+   A   + +  
Sbjct: 378 E----ANRLIA-KGRIHPTLSKVYSLEDTGQAAYDVHRNL 412

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 84.1 bits (208), Expect = 2e-18
 Identities = 51/335 (15%), Positives = 101/335 (30%), Gaps = 57/335 (17%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
                  +LG +  GVV   G  V     GD VI H      E        G L      
Sbjct: 105 RHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVD-EQEPATHGDGMLG----- 158

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                      +  +    ET          +EY V+  + ++     +    A +    
Sbjct: 159 -----------TEQRAWGFETNF-----GGLAEYGVVRASQLLPKPAHLTWEEAAVSPLC 202

Query: 124 VSTGVGAAWR------TANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEK 176
             T    A+R       A ++ G  V+I+G    +G    +  +  G    + V   ++K
Sbjct: 203 AGT----AYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQK 257

Query: 177 FEIGKRFGVTEFVNSKNCGD---------------KSVSQIIIDMTDGGADYCFECVGLA 221
               +  G    +N    G                + +++++++      D  FE  G  
Sbjct: 258 EAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRV 317

Query: 222 SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPIL 281
           +    +    R+G G  +  G    G   +  +  +    K ++GS     + +      
Sbjct: 318 TFGL-SVIVARRG-GTVVTCGS-SSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQA---- 370

Query: 282 LKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 316
             R  +    +   ++      E   A  ++   +
Sbjct: 371 TNRLFESG-AVVPAMSAVYPLAEAAEACRVVQTSR 404

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 83.0 bits (206), Expect = 3e-18
 Identities = 71/325 (21%), Positives = 121/325 (37%), Gaps = 58/325 (17%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
               P +LG +  GVV++VG  V+G   GD V+ +    C  C  C + + NLC  +   
Sbjct: 54  KLPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRY--- 110

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 124
                          + GE  H      +++EY VL  A++      +    A  +    
Sbjct: 111 --------------QILGEHRH-----GTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTF 151

Query: 125 STGVGAAWR----TANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVI-----S 174
            T    AW+       V  G  V++   GS + +A  + A+L GA       VI      
Sbjct: 152 LT----AWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGAR------VIATAGSE 201

Query: 175 EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRK 233
           +K    K  G  E VN          + +  +T G GAD   +  G A   +        
Sbjct: 202 DKLRRAKALGADETVNYT---HPDWPKEVRRLTGGKGADKVVDHTG-ALYFEGVIKATAN 257

Query: 234 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE-- 291
           G G+  + G    G + +L    V +    ++GS      +KS +  +L+   + +L+  
Sbjct: 258 G-GRIAIAGA-SSGYEGTLPFAHVFYRQLSILGSTMA---SKSRLFPILRFVEEGKLKPV 312

Query: 292 LDKFVTHEMKFEEINSAFDLLIKGK 316
           + +     +  E       LL + +
Sbjct: 313 VGQ----VLPLEAAAEGHRLLEERR 333

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 57/343 (16%), Positives = 107/343 (31%), Gaps = 74/343 (21%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           M+   A     LG +  G V +VG +V  +  GD V                        
Sbjct: 55  MRGQFATPWAFLGTDYAGTVVAVGSDVTHIQVGDRVY----------------------G 92

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
              ++ P  P                      +FS+YTV       K+   +   +A  L
Sbjct: 93  AQNEMCPRTPDQ-------------------GAFSQYTVTRGRVWAKIPKGLSFEQAAAL 133

Query: 121 SCGVST--------GVGAAW----RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRI 167
             G+ST        G+        +         V+++G   +      +  RL G   I
Sbjct: 134 PAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPI 193

Query: 168 IGVDVISEK-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQE 226
                 S   F++ K  G  E  + +     +++Q I   T     Y  +C+        
Sbjct: 194 A---TCSPHNFDLAKSRGAEEVFDYR---APNLAQTIRTYTKNNLRYALDCITNVESTTF 247

Query: 227 AYACCRKGWGKTIVL--GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLK- 283
            +A   +  G  + L    +   ++  +++   L       GS +     +       + 
Sbjct: 248 CFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQF 307

Query: 284 -----RYMDKELELDKFVTHEMK-----FEEINSAFDLLIKGK 316
                R   + +E  + V H ++     F+ I    +L+ KG+
Sbjct: 308 GEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGE 350

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 51/325 (15%), Positives = 89/325 (27%), Gaps = 68/325 (20%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
                P + G+E +  V +VG NV G+  GD VI              +  G        
Sbjct: 80  LLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVI-----------PANAGLG-------- 120

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                                        ++    V     +++V   +P   A  L   
Sbjct: 121 -----------------------------TWRTEAVFSEEALIQVPSDIPLQSAATLGVN 151

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV---DVISEKFEI 179
             T          ++ G +V+       +G AV + A   G   I  V     I +  + 
Sbjct: 152 PCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDR 211

Query: 180 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT 238
            K  G    +      +    ++     D         CVG      E      +G G  
Sbjct: 212 LKSLGAEHVITE---EELRRPEMKNFFKDMPQPRLALNCVG-GKSSTELLRQLARG-GTM 266

Query: 239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL-------E 291
           +  G       +  S   ++     L G  +     K   P   K  +   L       +
Sbjct: 267 VTYGG-MAKQPVVASVSLLIFKDLKLRG-FWLSQWKKDHSPDQFKELIL-TLCDLIRRGQ 323

Query: 292 LDKFVTHEMKFEEINSAFDLLIKGK 316
           L      ++  ++  SA +  +K  
Sbjct: 324 LTAPACSQVPLQDYQSALEASMKPF 348

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 70.7 bits (174), Expect = 6e-14
 Identities = 76/343 (22%), Positives = 119/343 (34%), Gaps = 92/343 (26%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLAD-CTECVGCRSKKGNLCSAFPF 63
            +++P + GHE +G V  VG  V  V  GD V    L   C  C  C +   N C     
Sbjct: 67  FSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMIL 126

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC- 122
                     T       G   +       +S + V +  ++++    +P +    L C 
Sbjct: 127 ----------TYASIYHDGTITY-----GGYSNHMVANERYIIRFPDNMPLDGGAPLLCA 171

Query: 123 GVST-------GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGV 170
           G++        G+           G  + I GLG +G      A A G++         V
Sbjct: 172 GITVYSPLKYFGLDEP--------GKHIGIVGLGGLGHVAVKFAKAFGSK---------V 214

Query: 171 DVISE----KFEIGKRFGVTEFVNSKNCGD-KSVSQ---IIIDMTDGGADYCFECVGLAS 222
            VIS     K E  K FG   F+ S++    ++ +     IID                 
Sbjct: 215 TVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL--------- 265

Query: 223 LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK--------- 273
                     K  GK I++G   P   L L +F ++   KI+ GS  GG+K         
Sbjct: 266 ---LPLFGLLKSHGKLILVGA--PEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFA 320

Query: 274 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 316
           AK +I        D E+         +  + +N+A + L K  
Sbjct: 321 AKHNI------TADIEV---------ISTDYLNTAMERLAKND 348

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 67.8 bits (166), Expect = 5e-13
 Identities = 36/258 (13%), Positives = 61/258 (23%), Gaps = 71/258 (27%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
                   G+E +  V  VG NV  +  GD VIP  +   T                   
Sbjct: 69  TTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGT------------------- 109

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD-----------PTVP 113
                                        +  + + +    +K+              + 
Sbjct: 110 -----------------------------WRTHALGNDDDFIKLPNPAQSKANGKPNGLT 140

Query: 114 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGARLCGATRIIGV- 170
            N+   +S    T          +  G    I   G  ++G   ++  +L      I V 
Sbjct: 141 INQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVI 199

Query: 171 ---DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD---GGADYCFECVGLASLV 224
                + E     K  G T+ +       +     I +      G A     CVG     
Sbjct: 200 RDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVG-GKSS 258

Query: 225 QEAYACCRKGWGKTIVLG 242
                      G  +  G
Sbjct: 259 TGIARKLNNN-GLMLTYG 275

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 67.6 bits (166), Expect = 6e-13
 Identities = 68/343 (19%), Positives = 115/343 (33%), Gaps = 92/343 (26%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPF 63
            + +P + GHE +G V  VG +V     GD+V +   +  C  C  C       C    +
Sbjct: 60  MSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIW 119

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC- 122
                     +     + G+          F++ TV+    VVK+   +   +A  L C 
Sbjct: 120 ----------SYNDVYINGQPTQ-----GGFAKATVVHQKFVVKIPEGMAVEQAAPLLCA 164

Query: 123 GVST-------GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGV 170
           GV+        G+           G    I GLG +G     +A A G           V
Sbjct: 165 GVTVYSPLSHFGLKQP--------GLRGGILGLGGVGHMGVKIAKAMGHH---------V 207

Query: 171 DVISE----KFEIGKRFGVTEFVNSKNCGD-KSVSQ---IIIDMTDGGADYCFECVGLAS 222
            VIS     + E  +  G  ++V   +      ++     +ID                 
Sbjct: 208 TVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHAL--------- 258

Query: 223 LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK--------- 273
              E Y    K  GK I++GV    + L   +  ++   K++ GS  G +K         
Sbjct: 259 ---EPYLSLLKLDGKLILMGV--INNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFC 313

Query: 274 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 316
            +  +          E+         +K + +N+AF+ L K  
Sbjct: 314 KEKGL------SSIIEV---------VKMDYVNTAFERLEKND 341

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 65/338 (19%), Positives = 110/338 (32%), Gaps = 78/338 (23%)

Query: 5   PAVFPRILGHEAIGVVESVGENVD-GVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFP 62
               P ++GHE +G V  +G   + G+  G  V +   +  C EC  C++     C+ F 
Sbjct: 59  NMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFV 118

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
                      T       G      VS   ++ Y  +    VV +   +P + A  L C
Sbjct: 119 T----------TYSQPYEDGY-----VSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLC 163

Query: 123 -GVSTGVGAAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVI 173
            G++      +          G  V I GLG IG     ++ A GA            VI
Sbjct: 164 GGLTV-----YSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAE---------TYVI 209

Query: 174 S---EKFEIGKRFGVTEFVNSKNCGDKSVSQ-----IIIDMTDGGADYCFECVGLASLVQ 225
           S    K E   + G   ++ +   GD          +I+       D  F          
Sbjct: 210 SRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFN--------- 260

Query: 226 EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRY 285
                  K  G+ + + +  P     LS          +  S  G +K   ++       
Sbjct: 261 -IMPKAMKVGGRIVSISI--PEQHEMLSLKPYGLKAVSISYSALGSIK---EL-----NQ 309

Query: 286 MDKELEL--DKFVTHE-----MKFEEINSAFDLLIKGK 316
           +   L+L  +K +        +    ++ AF+ + KG 
Sbjct: 310 L---LKLVSEKDIKIWVETLPVGEAGVHEAFERMEKGD 344

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 74/335 (22%), Positives = 120/335 (35%), Gaps = 78/335 (23%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPF 63
             ++P I GHE  G+++ VG+ V     GDVV +  F+  C  C  C+  +   C+   F
Sbjct: 55  EGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVF 114

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC- 122
                              E          +S   V+D  +V+ VD   P  +   L C 
Sbjct: 115 TYD--------CLDSFHDNEPHM-----GGYSNNIVVDENYVISVDKNAPLEKVAPLLCA 161

Query: 123 GVSTGVGAAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS 174
           G++T     +   + + V  G+ V + G G +G      AVA GA          V V +
Sbjct: 162 GITT-----YSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAE---------VSVFA 207

Query: 175 ---EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 231
               K +     GV  F        + +   II       D             + Y   
Sbjct: 208 RNEHKKQDALSMGVKHFYTDPKQCKEELD-FIISTIPTHYDL------------KDYLKL 254

Query: 232 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSG-KILMGSLFGGLK---------AKSDIPIL 281
               G   ++G+        LS F+ +H G + + GSL GG+K          K +I   
Sbjct: 255 LTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFSIKHNI--- 311

Query: 282 LKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 316
              Y + +L         +  ++I++A+  L  GK
Sbjct: 312 ---YPEIDL---------ILGKDIDTAYHNLTHGK 334

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 85/340 (25%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPF 63
             V+P + GHE +G V +VG+ V+    GD+V +   +  C  C  C     N C     
Sbjct: 73  GTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTG 132

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV-DPTVPPNRACLLSC 122
                     T                   +S+  V+   +V+++  P         L C
Sbjct: 133 ----------TYNSPTPDEPGHTL----GGYSQQIVVHERYVLRIRHPQEQLAAVAPLLC 178

Query: 123 -GVSTGVGAAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVI 173
            G++T     +   R      G  V + G+G +G     LA A GA          V   
Sbjct: 179 AGITT-----YSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH---------VVAF 224

Query: 174 S---EKFEIGKRFGVTEFVNSKNCGD-KSVSQ---IIIDMTDGGADYCFECVGLASLVQE 226
           +    K E  K  G  E VNS+N  +  +  +    I++      +             +
Sbjct: 225 TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNL------------D 272

Query: 227 AYACCRKGWGKTIVLGVDQPGSQL-SLSSFEVLHSGKILMGSLFGGLK---------AKS 276
            +    K  G   ++G   P +   S   F ++   + + GS+ GG+          A+ 
Sbjct: 273 DFTTLLKRDGTMTLVGA--PATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEH 330

Query: 277 DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 316
            I        D E+         ++ ++IN A++ +++G 
Sbjct: 331 GI------VADIEM---------IRADQINEAYERMLRGD 355

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 58/240 (24%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
                P I G+E +G+VE+VG  V   + G  V+P                         
Sbjct: 58  HRIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLP------------------------- 92

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                                        ++ EY       VV +  ++    A  +   
Sbjct: 93  ------------------------LRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYIN 128

Query: 124 VSTGVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
             T       T N++    +++     +IG   A+ +++    R+I V   ++  E   R
Sbjct: 129 PLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR 187

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
            G    +++       + + ++++T+G GAD   + +G      E     R       + 
Sbjct: 188 LGAAYVIDTS---TAPLYETVMELTNGIGADAAIDSIG-GPDGNELAFSLR--PNGHFLT 241

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 64/223 (28%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P  LG EA G+V  VG  V  +  GD V           +G                  
Sbjct: 57  LPSGLGTEAAGIVSKVGSGVKHIKAGDRV-----VYAQSALG------------------ 93

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA--CLLSCGVS 125
                                    ++S    +       +   +   +A    L     
Sbjct: 94  -------------------------AYSSVHNIIADKAAILPAAISFEQAAASFLK---- 124

Query: 126 TGVGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
            G+       +T  ++     +     G +GL   + A+  GA  +IG    ++K +   
Sbjct: 125 -GLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKAQSAL 182

Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL 223
           + G  + +N +   ++ + + + ++T G      ++ VG  + 
Sbjct: 183 KAGAWQVINYR---EEDLVERLKEITGGKKVRVVYDSVGRDTW 222

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 60/221 (27%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
           P   P +LG EA G V + G+ V     GD V                            
Sbjct: 60  PCEKPYVLGREASGTVVAKGKGVTNFEVGDQVA--------------------------- 92

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT-VLDIAHVVKVDPTVPPNRACLLSCG 123
                                  ++S S+F++Y+ +     V+K+          L + G
Sbjct: 93  -----------------------YISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAG 129

Query: 124 VSTGVGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 179
           +   + A        +V+ G  V++F   G +GL + +  ++ GA   I V    EK +I
Sbjct: 130 LLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAH-TIAVASTDEKLKI 188

Query: 180 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVG 219
            K +G    +N+     + + + ++  T+G G D  F+ VG
Sbjct: 189 AKEYGAEYLINAS---KEDILRQVLKFTNGKGVDASFDSVG 226

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 49/230 (21%), Positives = 78/230 (33%), Gaps = 78/230 (33%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P  LG E  GVVE+VG+ V     GD V     A  T  +G                  
Sbjct: 57  LPSGLGAEGAGVVEAVGDEVTRFKVGDRV-----AYGTGPLG------------------ 93

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
                                    ++SE  VL  A++VK+      +        VS  
Sbjct: 94  -------------------------AYSEVHVLPEANLVKL-----AD-------SVSFE 116

Query: 128 VGAAW------------RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS 174
             AA             +T  V+ G  ++     G +G    + A+  GA  +IG     
Sbjct: 117 QAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAK-LIGTVSSP 175

Query: 175 EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL 223
           EK    K  G  E ++      + V++ ++++TDG      ++ VG  + 
Sbjct: 176 EKAAHAKALGAWETIDYS---HEDVAKRVLELTDGKKCPVVYDGVGQDTW 222

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 56/223 (25%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
               P ++G EA  VVE VG  V     G+ V       C   +G               
Sbjct: 57  VGEPPIVVGFEAAAVVEEVGPGVTDFTVGERV-----CTCLPPLG--------------- 96

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 124
                                       ++S+  +     ++KV   +  +   L    +
Sbjct: 97  ----------------------------AYSQERLYPAEKLIKVPKDLDLDDVHLAGLML 128

Query: 125 S--TGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 181
              T      +T  V+ G  V+I    G +G  +   AR  GAT +IG     EK E  +
Sbjct: 129 KGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGAT-VIGTVSTEEKAETAR 187

Query: 182 RFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL 223
           + G    +N      +  ++++ ++T G G D  ++ +G  +L
Sbjct: 188 KLGCHHTINYS---TQDFAEVVREITGGKGVDVVYDSIGKDTL 227

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 55.3 bits (133), Expect = 9e-09
 Identities = 40/322 (12%), Positives = 82/322 (25%), Gaps = 73/322 (22%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 64
                  +G+E  GVV   G +          +                           
Sbjct: 87  RLDASMPVGNEGAGVVVEAGSSPAAQALMGKTV--------------------------- 119

Query: 65  ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR-ACLLSCG 123
                                   +  + +S+Y  +     + +     P   A      
Sbjct: 120 ----------------------AAIGGAMYSQYRCIPADQCLVLPEGATPADGASSFVNP 157

Query: 124 VSTGVGAAW---RTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEI 179
           ++     A     T  +E  S +V     S +G  + +     G  +++ +    E+ ++
Sbjct: 158 LT-----ALGMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGI-KLVNIVRKQEQADL 211

Query: 180 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT 238
            K  G     N+      +  Q + +     GA   F+  G   L  +   C      K+
Sbjct: 212 LKAQGAVHVCNA---ASPTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKS 268

Query: 239 IVLGVDQPGSQL-SLSSFEVLHSGKILMGSLFGGLKAKSD---IPILLKRYMDKELELDK 294
                    +    +  +  L +        FG           P L K   ++   L +
Sbjct: 269 AREYSRYGSTTHKQVYLYGGLDTSPTEFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQ 328

Query: 295 FVTHEMKFEEINSAFDLLIKGK 316
            V       E+ + F      +
Sbjct: 329 RV-----VAELKTTFASHYSKE 345

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 56/242 (23%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
              + P   G +  GV+E+VG+N     +GD V        +  +      G        
Sbjct: 83  RKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVF------TSSTIS-----G-------- 123

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                                         ++EY +     V K+   +   +   +   
Sbjct: 124 -----------------------------GYAEYALAADHTVYKLPEKLDFKQGAAIGIP 154

Query: 124 VSTGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKR 182
             T   A   +A V+ G +V++ G    +GLA  + AR  G  +I+G     E  +I  +
Sbjct: 155 YFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ 213

Query: 183 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL 241
            G  E  N +   + +    I       G D   E +     + +  +    G G+ IV+
Sbjct: 214 NGAHEVFNHR---EVNYIDKIKKYVGEKGIDIIIEMLA-NVNLSKDLSLLSHG-GRVIVV 268

Query: 242 GV 243
           G 
Sbjct: 269 GS 270

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 9/152 (5%)

Query: 93  SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LGSI 151
            ++E   +  ++++   P +    A  L     T   A  R   +  G TV++ G  G I
Sbjct: 113 GYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGI 172

Query: 152 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 210
           G A  + A+  GA ++I V   +   E  K  G    +      ++  ++ + + T G G
Sbjct: 173 GTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPL----EEGWAKAVREATGGAG 227

Query: 211 ADYCFECVGLASLVQEAYACCRKGWGKTIVLG 242
            D   + +G      +A        G+ +V+G
Sbjct: 228 VDMVVDPIG-GPAFDDAVRTLASE-GRLLVVG 257

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 42/223 (18%), Positives = 67/223 (30%), Gaps = 66/223 (29%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDG-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
           D     P  +G E IG V ++G +       G  V                         
Sbjct: 78  DPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA------------------------ 113

Query: 62  PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
                                     +++  SF+EYTV+  +    V P+V P    LL 
Sbjct: 114 --------------------------YMAPGSFAEYTVVPASIATPV-PSVKPEYLTLLV 146

Query: 122 CGVSTGVGAAW----RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEK 176
            G +     A+        +  G  V++    G  G    + ++      +IG     EK
Sbjct: 147 SGTT-----AYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEK 200

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG 219
               K  G    +N K    + V  ++      G D  +E VG
Sbjct: 201 SAFLKSLGCDRPINYK---TEPVGTVLKQEYPEGVDVVYESVG 240

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 50/328 (15%), Positives = 97/328 (29%), Gaps = 90/328 (27%)

Query: 4   FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 63
                P  LG++  G V  +G +V+ V  GD V+                          
Sbjct: 63  LKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVM----------------------GIA- 99

Query: 64  KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 123
                        F D              ++EY       +++    +   +A      
Sbjct: 100 ------------GFPDHPC----------CYAEYVCASPDTIIQKLEKLSFLQA----AS 133

Query: 124 VSTGVGAAW---RTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVIS 174
           + T    A      A V+ G  V+I     G+G +   LA  +G  +             
Sbjct: 134 LPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-------K 186

Query: 175 EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 234
                 K  G  + +N          +  +       D   + VG      ++  C ++ 
Sbjct: 187 RNHAFLKALGAEQCINYH-------EEDFLLAISTPVDAVIDLVGGDVG-IQSIDCLKET 238

Query: 235 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPIL--LKRYMDKELEL 292
            G  IV        ++   + +              GL  + +I  L  L + + ++ +L
Sbjct: 239 -GC-IVSVPTITAGRVIEVAKQK--------HRRAFGLLKQFNIEELHYLGKLVSED-KL 287

Query: 293 DKFVTHEMKFEEINSAFDLL----IKGK 316
              ++   +  E  +A +LL    ++GK
Sbjct: 288 RIEISRIFQLSEAVTAHELLETGHVRGK 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 52/316 (16%), Positives = 89/316 (28%), Gaps = 121/316 (38%)

Query: 25  ENVDGVV-EGDVVIP-HFLADCTECVGCRSKKGNLCSAF---------PFKISPWM---- 69
           E +D ++   D V     L          SK+  +   F          F +SP      
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTL-----LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 70  -PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 128
            P   T  + + R      +     F++Y V  +   +K+       R  LL        
Sbjct: 104 QPSMMTRMYIEQRDRL---YNDNQVFAKYNVSRLQPYLKL-------RQALL-------- 145

Query: 129 GAAWRTANVEVGSTVVIFGLGSIG---LAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 185
                   +     V+I G+   G   +A  +                S K +    F +
Sbjct: 146 -------ELRPAKNVLIDGVLGSGKTWVA-LDVCL-------------SYKVQCKMDFKI 184

Query: 186 TEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 244
             F +N KNC        +++M             L  L         +         +D
Sbjct: 185 --FWLNLKNCNSPET---VLEM-------------LQKL-------LYQ---------ID 210

Query: 245 QPGSQLSLSSFEV---LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 301
              +  S  S  +   +HS +  +  L              K Y +  L L   V +   
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLL-----------KSKPYENCLLVLLN-VQN--- 255

Query: 302 FEEINSAFDLLIKGKC 317
             +  +AF+L     C
Sbjct: 256 -AKAWNAFNL----SC 266

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 54/297 (18%), Positives = 93/297 (31%), Gaps = 83/297 (27%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
                   P ILG +  G V +VG  VD    GD V            G           
Sbjct: 56  APHAQQPLPAILGMDLAGTVVAVGPEVDSFRVGDAVF-----------GL---------- 94

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                        T     L+G          + +++  +D   +       P      L
Sbjct: 95  -------------TGGVGGLQG----------THAQFAAVDARLLAS----KPAA----L 123

Query: 121 S----CGVSTGVGAAW----RTANVEVGSTVVIF----GLGS--IGLAVAEGARLCGATR 166
           +      +      AW      A V+ G TV+I     G+G   I +A+A GAR+    R
Sbjct: 124 TMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATAR 183

Query: 167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQ 225
                      E  +  G T          +       + T G G D  ++ +G   ++ 
Sbjct: 184 -------GSDLEYVRDLGATPIDA-----SREPEDYAAEHTAGQGFDLVYDTLG-GPVLD 230

Query: 226 EAYACCRKGWGKTIVLGVDQPGSQLSLSSF-EVLHSGKILMGSLFGGLKAKSDIPIL 281
            +++  ++  G  +V  +     +L+  SF +  +SG   + +L           +L
Sbjct: 231 ASFSAVKRF-GH-VVSCLGWGTHKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEML 285

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 1  MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV 36
                    + G +  GV+  VG  VD  + G  V
Sbjct: 51 ANPINWSNGHVPGVDGAGVIVKVGAKVDSKMLGRRV 86

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 9/151 (5%)

Query: 94  FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IG 152
           ++E     +  V K+   +  + A        T     +  AN+  G +V++   G  +G
Sbjct: 97  WAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVG 156

Query: 153 LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 212
            AVA+         + G    + K E  K   VT   +     +    Q +  ++  G D
Sbjct: 157 QAVAQLCSTVPNVTVFGT-ASTFKHEAIKD-SVTHLFDR----NADYVQEVKRISAEGVD 210

Query: 213 YCFECVGLASLVQEAYACCRKGWGKTIVLGV 243
              +C+       +  +  +   G  I+ G 
Sbjct: 211 IVLDCLC-GDNTGKGLSLLKPL-GTYILYGS 239

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 8  FPRILGHEAIGVVESVGENVDGVVEGDVV 36
           PR+LG +AIGVVESVG  V    +GD+V
Sbjct: 59 APRVLGFDAIGVVESVGNEVTMFNQGDIV 87

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 171
           G  ++I+G G IG ++A  A   G   +IGV+
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGM-HVIGVN 167

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV 36
           K     FP  LG +  GVV   G +V     GD V
Sbjct: 88  KIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 5   PAVFPRILGHEAIGVVESVGENVDGVVEGDVV 36
                +++G++A G+V +VG +V     GD V
Sbjct: 78  DGTDWKVIGYDAAGIVSAVGPDVTLFRPGDEV 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.96
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.9
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.17
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.97
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.7
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.6
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.57
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.56
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.51
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.44
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.19
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.06
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.05
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.04
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.02
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.02
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.99
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.96
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.84
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.8
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.79
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.76
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.59
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.58
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.57
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.55
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.54
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.54
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.53
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.52
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.5
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.5
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.45
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.42
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.37
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.37
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.34
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.33
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.28
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.24
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.2
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.2
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.19
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.17
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.16
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.15
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.15
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.15
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.14
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.13
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.12
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.12
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.11
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.11
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.11
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.1
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.1
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.09
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.08
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.08
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.08
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.07
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.07
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.07
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.07
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.06
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.05
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.05
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.05
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.04
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.04
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.03
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.02
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.02
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.02
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.01
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.0
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.98
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.97
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.96
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.96
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.96
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.95
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.94
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.94
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.93
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.93
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.92
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.92
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.92
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.91
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.91
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.91
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.91
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.91
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.9
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.9
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.9
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.9
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.89
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.89
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.89
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.89
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.88
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.88
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.88
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.88
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.87
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.87
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.87
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.87
1spx_A	278	Short-chain reductase family member (5L265); paral	96.86
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.86
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.86
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.85
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.85
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.85
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.85
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.84
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.84
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.84
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.84
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.84
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.83
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.83
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.82
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.82
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.82
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.82
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.82
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.82
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.81
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.81
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.81
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.8
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.8
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.8
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.8
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.8
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.8
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.79
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.79
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.79
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.79
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.78
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.78
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.78
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.77
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.77
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.76
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.76
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.75
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.75
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.74
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.74
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.74
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.73
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.72
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.72
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.72
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.72
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.71
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.71
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.7
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.7
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.7
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.7
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.7
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.7
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.7
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.69
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.67
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.67
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.66
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.66
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.65
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.64
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.64
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.64
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.63
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.63
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.63
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.63
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.62
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.62
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.62
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.62
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.62
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.61
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.61
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.6
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.6
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.59
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.59
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.58
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.57
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.57
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.57
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.57
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.57
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.57
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.56
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.55
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.55
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.55
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.55
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.54
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.54
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.53
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.53
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.53
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.53
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.53
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.52
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.52
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.52
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.51
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.51
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.51
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.5
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.5
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.5
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	96.48
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.48
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.47
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.47
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.47
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.46
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.46
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.46
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.45
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.45
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.42
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.41
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.41
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.41
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.41
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.4
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.39
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.39
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.38
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.38
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.38
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.38
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.37
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.37
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.36
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.35
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.34
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.34
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.34
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.33
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.33
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.33
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.32
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.32
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.32
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.32
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.31
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.3
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.29
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.29
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.28
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.28
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.28
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.27
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.27
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.26
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.26
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.26
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.25
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.24
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.24
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.23
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.22
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.21
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.21
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.21
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.2
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.2
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.19
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.18
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.18
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.17
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.17
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.17
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.16
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.15
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.15
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.15
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.14
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.13
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.13
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.13
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.13
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.12
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.11
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.1
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.1
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.09
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.09
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.09
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.09
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.07
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.07
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.05
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.05
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.04
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.04
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.04
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.03
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.03
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.02
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.02
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.02
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.01
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.01
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.01
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.01
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.0
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	96.0
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.0
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.98
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.98
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.97
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	95.96
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.96
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	95.96
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	95.96
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.96
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.95
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.94
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	95.94
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.94
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.94
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.94
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.92
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.91
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.9
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	95.89
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.88
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	95.87
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	95.87
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.87
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.86
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.83
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	95.83
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.81
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.8
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.79
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.79
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.79
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.78
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	95.77
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	95.76
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.75
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	95.74
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	95.69
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	95.68
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	95.68
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.68
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.67
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.67
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.66
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.66
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	95.66
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.65
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	95.64
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.64
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.64
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.63
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	95.62
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.6
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	95.59
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	95.59
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.58
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	95.58
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.58
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.57
2i7c_A	283	Spermidine synthase; transferase, structural genom	95.57
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.55
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.55
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.54
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	95.54
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.53
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.52
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	95.52
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.52
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	95.52
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	95.51
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	95.5
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.5
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.49
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.49
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.47
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.47
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.46
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.46
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.45
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	95.44
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	95.43
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	95.42
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.42
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.42
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	95.41
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	95.41
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	95.4
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.39
2o07_A	304	Spermidine synthase; structural genomics, structur	95.39
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	95.38
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.36
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	95.36
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	95.35
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.32
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.32
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	95.31
2pt6_A	321	Spermidine synthase; transferase, structural genom	95.31
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.31
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.3
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	95.3
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.29
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.28
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.28
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	95.28
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.27
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	95.27
3lpm_A	259	Putative methyltransferase; structural genomics, p	95.25
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.24
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	95.24
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.24

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=8.7e-53  Score=389.32  Aligned_cols=322  Identities=49%  Similarity=0.930  Sum_probs=276.0

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKD   79 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~   79 (326)
                      |.+|...+|+++|||++|+|+++|++|++|++||||++.+...|+.|.+|+.+++++|.........|+. .+|..++. 
T Consensus        55 g~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~-  133 (378)
T 3uko_A           55 GKDPEGLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFS-  133 (378)
T ss_dssp             TCCTTCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEE-
T ss_pred             CCCCCCCCCccCCccceEEEEEeCCCCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccc-
Confidence            3456678999999999999999999999999999999999999999999999999999876431112222 22222221 


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHH
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la  159 (326)
                      ..|...+++.+.|+|+||++++++.++++|+++|+++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|
T Consensus       134 ~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a  213 (378)
T 3uko_A          134 VNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGA  213 (378)
T ss_dssp             ETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHH
T ss_pred             cCCcccccccCCcceEeEEEechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHH
Confidence            12333445566789999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhc-CCcEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK-GWGKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~-~~G~~  238 (326)
                      |++|+.+|++++++++++++++++|+++++++.+ ...++.+.+++++++++|+||||+|.+..+..+++++++ + |++
T Consensus       214 ~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~-G~i  291 (378)
T 3uko_A          214 KTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKD-HDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTS  291 (378)
T ss_dssp             HHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGG-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTT-CEE
T ss_pred             HHcCCCeEEEEcCCHHHHHHHHHcCCcEEEcccc-CchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccC-CEE
Confidence            9999878999999999999999999999999872 126889999999988999999999998779999999999 5 999


Q ss_pred             EEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      +.+|.........++...++. ++++.+++.+....++++.++++++++|+++++++++++|+++++++||+.+.+++..
T Consensus       292 v~~G~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~  370 (378)
T 3uko_A          292 VIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCL  370 (378)
T ss_dssp             EECSCCCTTCCEEECTHHHHT-TCEEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCS
T ss_pred             EEEcccCCCCccccCHHHHhc-CcEEEEEEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCce
Confidence            999986555566677666665 8999998776554456899999999999999989999999999999999999988878


Q ss_pred             EEEEEeCC
Q 020435          319 RCVIWMGE  326 (326)
Q Consensus       319 k~vv~~~~  326 (326)
                      |++|++++
T Consensus       371 Kvvi~~~~  378 (378)
T 3uko_A          371 RCVLDTSK  378 (378)
T ss_dssp             EEEEETTC
T ss_pred             EEEEecCC
Confidence            99999875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=8.1e-50  Score=368.87  Aligned_cols=313  Identities=39%  Similarity=0.711  Sum_probs=260.5

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.+++++|.........|+..+|..++. ..|...
T Consensus        60 ~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~  138 (373)
T 1p0f_A           60 SKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPI  138 (373)
T ss_dssp             CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEE
T ss_pred             CCCCcccCcCceEEEEEECCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccc-cCCccc
Confidence            5689999999999999999999999999999999999999999999999999987653111133222211110 011112


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                      +++...|+|+||++++++.++++|+++|++ ||++++++.|||+++.+.+++++|++|||+|+|++|++++|+||++|+.
T Consensus       139 ~~~~~~G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~  217 (373)
T 1p0f_A          139 YNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGAS  217 (373)
T ss_dssp             BCSTTTCCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCS
T ss_pred             ccccCCccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            222334699999999999999999999999 9999999999999888889999999999999999999999999999986


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCC-cEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~  244 (326)
                      +|++++++++++++++++|+++++++.+ ...++.+.+++.+++++|+||||+|.+..+..+++++++ . |+++.+|..
T Consensus       218 ~Vi~~~~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~  295 (373)
T 1p0f_A          218 RIIGVGTHKDKFPKAIELGATECLNPKD-YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC-GSGVTVVLGLA  295 (373)
T ss_dssp             EEEEECSCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECCCC
T ss_pred             eEEEECCCHHHHHHHHHcCCcEEEeccc-ccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhc-CCCEEEEEccC
Confidence            7999999999999999999999998763 114688889998877999999999997768999999999 6 999999975


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                      .......++...++.++ ++.+++.+... .++++++++++++|++++.++++++|+++++++|++.+.+++..|++|.+
T Consensus       296 ~~~~~~~~~~~~~~~~~-~i~g~~~~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  373 (373)
T 1p0f_A          296 SPNERLPLDPLLLLTGR-SLKGSVFGGFK-GEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIMIY  373 (373)
T ss_dssp             CTTCCEEECTHHHHTTC-EEEECSGGGCC-GGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSCSEEEEEC
T ss_pred             CCCCccccCHHHhccCc-eEEeeccCCcC-HHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCcceEEEeC
Confidence            43334566766676777 99988655432 26899999999999998888889999999999999999888777999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=6.6e-50  Score=369.59  Aligned_cols=313  Identities=41%  Similarity=0.772  Sum_probs=261.0

Q ss_pred             CCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccccc
Q 020435            8 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHH   87 (326)
Q Consensus         8 ~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~   87 (326)
                      +|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.+++++|.........|+..+|..++. ..|...++
T Consensus        61 ~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~  139 (374)
T 2jhf_A           61 LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFT-CRGKPIHH  139 (374)
T ss_dssp             SSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEE-ETTEEEBC
T ss_pred             CCcccCcCceEEEEEECCCCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCccccc-cccccccc
Confidence            89999999999999999999999999999999999999999999999999987653111133222211110 00111222


Q ss_pred             ccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEE
Q 020435           88 FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRI  167 (326)
Q Consensus        88 ~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V  167 (326)
                      ++..|+|+||++++++.++++|+++|+++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+++|+.+|
T Consensus       140 ~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~V  219 (374)
T 2jhf_A          140 FLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARI  219 (374)
T ss_dssp             STTTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEE
T ss_pred             ccCCccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Confidence            33346999999999999999999999999999999999999988888999999999999999999999999999998679


Q ss_pred             EEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCC-cEEEEeccCCC
Q 020435          168 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVDQP  246 (326)
Q Consensus       168 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~  246 (326)
                      +++++++++.++++++|+++++++.+ ..+++.+.+++.+++++|+||||+|.+..+..+++++++ . |+++.+|....
T Consensus       220 i~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~  297 (374)
T 2jhf_A          220 IGVDINKDKFAKAKEVGATECVNPQD-YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE-AYGVSVIVGVPPD  297 (374)
T ss_dssp             EEECSCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCT-TTCEEEECSCCCT
T ss_pred             EEEcCCHHHHHHHHHhCCceEecccc-cchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhc-CCcEEEEeccCCC
Confidence            99999999999999999999998763 114688888888877999999999997768999999999 6 99999997543


Q ss_pred             CCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          247 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                      .....++...++.++ ++.+++.+.....++++++++++++|++++.++++++|+++++++|++.+.+++..|++|.+
T Consensus       298 ~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~  374 (374)
T 2jhf_A          298 SQNLSMNPMLLLSGR-TWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF  374 (374)
T ss_dssp             TCCEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCccccCHHHHhcCC-eEEEeccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCcceEEEeC
Confidence            344567767777777 99998755433346799999999999998888889999999999999999988777999875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=3e-50  Score=371.79  Aligned_cols=320  Identities=43%  Similarity=0.797  Sum_probs=264.3

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      |.+|...+|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.+++++|.........|+..+|..++. .
T Consensus        53 g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~  131 (373)
T 2fzw_A           53 GADPEGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-C  131 (373)
T ss_dssp             TCCTTCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-E
T ss_pred             CCCCCCCCCccccccccEEEEEECCCCCCCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCccccc-c
Confidence            344555789999999999999999999999999999999999999999999999999976431000022222211110 0


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                      .|..++++...|+|+||++++++.++++|+++|+++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+
T Consensus       132 ~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~  211 (373)
T 2fzw_A          132 KGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCK  211 (373)
T ss_dssp             TTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHH
T ss_pred             cccccccccCCccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH
Confidence            12222333345699999999999999999999999999999999999998888899999999999999999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCC-cEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTI  239 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v  239 (326)
                      .+|+.+|++++++++++++++++|+++++++.+ ...++.+.+++.+++++|+||||+|....+..+++++++ . |+++
T Consensus       212 ~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv  289 (373)
T 2fzw_A          212 VAGASRIIGVDINKDKFARAKEFGATECINPQD-FSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHK-GWGVSV  289 (373)
T ss_dssp             HHTCSEEEEECSCGGGHHHHHHHTCSEEECGGG-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEE
T ss_pred             HcCCCeEEEEcCCHHHHHHHHHcCCceEecccc-ccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhcc-CCcEEE
Confidence            999867999999999999999999999998763 114688889888877999999999997768999999999 6 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeE
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLR  319 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k  319 (326)
                      .+|.........++...++.++ ++.+++.+....+++++++++++++|++++.++++++|+++++++|++.+.+++..|
T Consensus       290 ~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k  368 (373)
T 2fzw_A          290 VVGVAASGEEIATRPFQLVTGR-TWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIR  368 (373)
T ss_dssp             ECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCCSE
T ss_pred             EEecCCCCceeeeCHHHHhcCC-EEEEeccCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCcce
Confidence            9997543334567766777777 999886554333467999999999999988888899999999999999999887779


Q ss_pred             EEEEe
Q 020435          320 CVIWM  324 (326)
Q Consensus       320 ~vv~~  324 (326)
                      ++|++
T Consensus       369 vvi~~  373 (373)
T 2fzw_A          369 TVVKI  373 (373)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99875

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-50  Score=374.22  Aligned_cols=314  Identities=30%  Similarity=0.510  Sum_probs=262.4

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCc-c
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE-T   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~-~   84 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+ .+|+.|.+|+.+++++|.........|...+|..++....|. .
T Consensus        57 ~~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~  135 (371)
T 1f8f_A           57 VPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVV  135 (371)
T ss_dssp             CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------C
T ss_pred             CCCCcccCcccceEEEEeCCCCCCCCCCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccc
Confidence            46899999999999999999999999999999999 999999999999999997654100112222221111000000 0


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  164 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~  164 (326)
                      ..++...|+|+||++++++.++++|+++|+++||+++++++|||+++.+.+++++|++|||+|+|++|++++|+||+.|+
T Consensus       136 ~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga  215 (371)
T 1f8f_A          136 NDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGA  215 (371)
T ss_dssp             BCCGGGTCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTC
T ss_pred             cccccCCccccCeEEechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            01123346999999999999999999999999999999999999988788999999999999999999999999999998


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      .+|+++++++++.++++++|+++++++.+   .++.+.+++.+++++|+||||+|.+..+..++++++++ |+++.+|..
T Consensus       216 ~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~  291 (371)
T 1f8f_A          216 SIIIAVDIVESRLELAKQLGATHVINSKT---QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAP  291 (371)
T ss_dssp             SEEEEEESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCC
T ss_pred             CeEEEECCCHHHHHHHHHcCCCEEecCCc---cCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEeCCC
Confidence            67999999999999999999999999887   78889999988779999999999977689999999998 999999976


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                      .......++...++.|++++.+++.+....+++++++++++++|++++.+++++ |+++++++|++.+.+++..|++|++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~~Kvvv~~  370 (371)
T 1f8f_A          292 QLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKPIIKI  370 (371)
T ss_dssp             STTCCCCCCHHHHHHTTCEEEECSGGGSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCCCccccCHHHHHhCCCEEEEeCCCCCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCceEEEEee
Confidence            433445677777788899999987654322357899999999999988888888 9999999999999988777999987


Q ss_pred             C
Q 020435          325 G  325 (326)
Q Consensus       325 ~  325 (326)
                      +
T Consensus       371 ~  371 (371)
T 1f8f_A          371 A  371 (371)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8e-50  Score=369.03  Aligned_cols=314  Identities=42%  Similarity=0.765  Sum_probs=261.3

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.+++++|.........|+..+|..++. ..|...
T Consensus        60 ~~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~  138 (374)
T 1cdo_A           60 DGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT-CKGRKV  138 (374)
T ss_dssp             TSCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEE-ETTEEE
T ss_pred             CCCCcccCccceEEEEEECCCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccc-cCCccc
Confidence            5689999999999999999999999999999999999999999999999999986542111133222211110 011112


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                      +++...|+|+||++++++.++++|+++|+++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+||++|+.
T Consensus       139 ~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~  218 (374)
T 1cdo_A          139 LQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAK  218 (374)
T ss_dssp             EEGGGTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCS
T ss_pred             ccccCCccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            22333469999999999999999999999999999999999999888889999999999999999999999999999986


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCC-cEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~  244 (326)
                      +|++++++++++++++++|+++++++.+ ..+++.+.+++.+++++|+||||+|.+..+..+++++++ . |+++.+|..
T Consensus       219 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~  296 (374)
T 1cdo_A          219 RIIAVDLNPDKFEKAKVFGATDFVNPND-HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLK-GWGVSVLVGWT  296 (374)
T ss_dssp             EEEEECSCGGGHHHHHHTTCCEEECGGG-CSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCC
T ss_pred             EEEEEcCCHHHHHHHHHhCCceEEeccc-cchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhc-CCcEEEEEcCC
Confidence            7999999999999999999999998763 114688888888877999999999987768999999999 6 999999875


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                      .. ....++...++.++ ++.+++.+....+++++++++++++|++++.++++++|+++++++|++.+++++..|++|++
T Consensus       297 ~~-~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  374 (374)
T 1cdo_A          297 DL-HDVATRPIQLIAGR-TWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  374 (374)
T ss_dssp             SS-SCEEECHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CC-CCcccCHHHHhcCC-eEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCeeEEEEeC
Confidence            43 34567777777777 99988655433345799999999999998888889999999999999999988877999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=2.2e-50  Score=371.97  Aligned_cols=290  Identities=23%  Similarity=0.401  Sum_probs=260.9

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      +..+|.++|||++|+|+++|++|++|++||||++.+...|+.|.+|+.+++++|.....   .|+..+|           
T Consensus        72 ~~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-----------  137 (370)
T 4ej6_A           72 PSTPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIHRDG-----------  137 (370)
T ss_dssp             CCCSSEECCCSEEEEEEEECTTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-----------
T ss_pred             CCCCCeecCcceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCCCCC-----------
Confidence            35789999999999999999999999999999999999999999999999999988775   6666666           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  164 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~  164 (326)
                              +|+||++++++.++++|+++++++|| +..+++|||+++ +.+++++|++|||+|+|++|++++|+|++.|+
T Consensus       138 --------~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga  207 (370)
T 4ej6_A          138 --------GFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGA  207 (370)
T ss_dssp             --------SSBSEEEEEGGGEEEECTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             --------cceEEEEEchhhEEECCCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence                    99999999999999999999999998 556999999976 88999999999999999999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHH---hcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID---MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~---~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .+|+++++++++.++++++|+++++++.+   .++.+.+++   ++++++|+||||+|....+..++++++++ |+++.+
T Consensus       208 ~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~-G~vv~~  283 (370)
T 4ej6_A          208 TTVILSTRQATKRRLAEEVGATATVDPSA---GDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVIL  283 (370)
T ss_dssp             SEEEEECSCHHHHHHHHHHTCSEEECTTS---SCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEE-EEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHcCCCEEECCCC---cCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEE
Confidence            78999999999999999999999999988   889999988   77779999999999877799999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce--eE
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LR  319 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~--~k  319 (326)
                      |........+++...++.+++++.|++..    ..+++++++++++|+++++++++++|+++++++|++.+.+++.  .|
T Consensus       284 G~~~~~~~~~~~~~~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~k  359 (370)
T 4ej6_A          284 GVLPQGEKVEIEPFDILFRELRVLGSFIN----PFVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVL  359 (370)
T ss_dssp             SCCCTTCCCCCCHHHHHHTTCEEEECCSC----TTCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEE
T ss_pred             eccCCCCccccCHHHHHhCCcEEEEeccC----hHHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEE
Confidence            98655456778888889999999998643    3579999999999999999999999999999999999987764  38


Q ss_pred             EEEEeCC
Q 020435          320 CVIWMGE  326 (326)
Q Consensus       320 ~vv~~~~  326 (326)
                      +++++++
T Consensus       360 vv~~~~~  366 (370)
T 4ej6_A          360 VIPSAER  366 (370)
T ss_dssp             ECCC---
T ss_pred             EEEcccc
Confidence            8887653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=2.1e-49  Score=366.46  Aligned_cols=315  Identities=40%  Similarity=0.726  Sum_probs=260.5

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCC----CCCCCCCCCCCCccccc
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP----FKISPWMPRDQTSRFKD   79 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~g~~~~~~   79 (326)
                      |...+|.++|||++|+|+++|++|++|++||||++.+...|+.|.+|+.+++++|....    .....|+..+|..++. 
T Consensus        57 ~~~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~-  135 (376)
T 1e3i_A           57 KKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT-  135 (376)
T ss_dssp             SCCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEE-
T ss_pred             CCCCCCcccCccccEEEEEECCCCccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccc-
Confidence            44568999999999999999999999999999999999999999999999999997654    1000122222210000 


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHH
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la  159 (326)
                      ..|.-.+++...|+|+||++++++.++++|+++|+++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|
T Consensus       136 ~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqla  215 (376)
T 1e3i_A          136 CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGC  215 (376)
T ss_dssp             ETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             cCCcccccccCCccceeEEEeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH
Confidence            00111122223469999999999999999999999999999999999999888889999999999999999999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCC-cEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~-G~~  238 (326)
                      |++|+.+|++++++++++++++++|+++++++.+ ..+++.+.+++.+++++|+||||+|.+..+..+++++++ . |++
T Consensus       216 k~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~-~~G~i  293 (376)
T 1e3i_A          216 KIAGASRIIAIDINGEKFPKAKALGATDCLNPRE-LDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL-GWGSC  293 (376)
T ss_dssp             HHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCT-TTCEE
T ss_pred             HHcCCCeEEEEcCCHHHHHHHHHhCCcEEEcccc-ccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhc-CCCEE
Confidence            9999867999999999999999999999998763 114688889888877999999999997768999999999 5 999


Q ss_pred             EEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      +.+|..  .....++...++.++ ++.+++.+....+++++++++++++|++++.++++++|+++++++|++.+.+++..
T Consensus       294 v~~G~~--~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~  370 (376)
T 1e3i_A          294 TVVGAK--VDEMTIPTVDVILGR-SINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSI  370 (376)
T ss_dssp             EECCCS--SSEEEEEHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCCS
T ss_pred             EEECCC--CCccccCHHHhhccC-eEEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCcc
Confidence            999873  345567777777778 99998655433346799999999999998888899999999999999999988777


Q ss_pred             EEEEEe
Q 020435          319 RCVIWM  324 (326)
Q Consensus       319 k~vv~~  324 (326)
                      |++|.+
T Consensus       371 Kvvi~~  376 (376)
T 1e3i_A          371 RTILTF  376 (376)
T ss_dssp             EEEEEC
T ss_pred             eEEEeC
Confidence            999875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=4.1e-49  Score=359.78  Aligned_cols=288  Identities=25%  Similarity=0.383  Sum_probs=257.9

Q ss_pred             CCCC-CCCCcccCCceeEEEEEecCCCCCccCCCEE-eecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 020435            2 KDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD   79 (326)
Q Consensus         2 ~~~~-~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~   79 (326)
                      .+|. ..+|+++|||++|+|+++|++|++|++|||| +..+...|+.|.+|+.+++++|.....   .|+..+|      
T Consensus        50 ~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~G------  120 (340)
T 3s2e_A           50 DWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYSVNG------  120 (340)
T ss_dssp             CSSSCCCSSBCCCSEEEEEEEEECSSCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC------
T ss_pred             CCCCCCCCCcccCCcceEEEEEECCCCCcCCCCCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCCCCC------
Confidence            3443 5799999999999999999999999999999 456778899999999999999988775   6766667      


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHH
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la  159 (326)
                                   +|+||++++++.++++|+++|+++||++++++.|||+++ +..++++|++|||+|+|++|++++|+|
T Consensus       121 -------------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla  186 (340)
T 3s2e_A          121 -------------GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYA  186 (340)
T ss_dssp             -------------SSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHH
T ss_pred             -------------cceeEEEechHHEEECCCCCCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHH
Confidence                         999999999999999999999999999999999999976 778999999999999999999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      +..|+ +|+++++++++.++++++|+++++++.+   .++.+.+++ +.+++|++||+.+....++.++++++++ |+++
T Consensus       187 ~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~---~~~~~~~~~-~~g~~d~vid~~g~~~~~~~~~~~l~~~-G~iv  260 (340)
T 3s2e_A          187 RAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARD---TDPAAWLQK-EIGGAHGVLVTAVSPKAFSQAIGMVRRG-GTIA  260 (340)
T ss_dssp             HHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTT---SCHHHHHHH-HHSSEEEEEESSCCHHHHHHHHHHEEEE-EEEE
T ss_pred             HHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCCC---cCHHHHHHH-hCCCCCEEEEeCCCHHHHHHHHHHhccC-CEEE
Confidence            99999 9999999999999999999999999988   788888888 4449999999999888799999999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-  318 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-  318 (326)
                      .+|...  ....++...++.+++++.+++...   +++++++++++++|++++.  + +.++++++++|++.+.+++.. 
T Consensus       261 ~~G~~~--~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~G  332 (340)
T 3s2e_A          261 LNGLPP--GDFGTPIFDVVLKGITIRGSIVGT---RSDLQESLDFAAHGDVKAT--V-STAKLDDVNDVFGRLREGKVEG  332 (340)
T ss_dssp             ECSCCS--SEEEEEHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSCCCC--E-EEECGGGHHHHHHHHHTTCCCS
T ss_pred             EeCCCC--CCCCCCHHHHHhCCeEEEEEecCC---HHHHHHHHHHHHhCCCCce--E-EEEeHHHHHHHHHHHHcCCCce
Confidence            998754  346677777888999999986543   4689999999999987753  4 788999999999999998875 


Q ss_pred             EEEEEeCC
Q 020435          319 RCVIWMGE  326 (326)
Q Consensus       319 k~vv~~~~  326 (326)
                      |++|++++
T Consensus       333 kvvv~~~~  340 (340)
T 3s2e_A          333 RVVLDFSR  340 (340)
T ss_dssp             EEEEECCC
T ss_pred             EEEEecCC
Confidence            99999875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=8.6e-49  Score=359.75  Aligned_cols=289  Identities=22%  Similarity=0.328  Sum_probs=254.1

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~   84 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.+++++|.....   .|.. .+|           
T Consensus        61 ~~~p~v~G~E~~G~V~~vG~~V~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~G-----------  126 (356)
T 1pl8_A           61 VKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDDG-----------  126 (356)
T ss_dssp             CSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBCC-----------
T ss_pred             CCCCcccccceEEEEEEECCCCCCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCCC-----------
Confidence            3579999999999999999999999999999999999999999999999999987664   4442 345           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  164 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~  164 (326)
                              +|+||++++++.++++|+++|+++||++ .+++|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+
T Consensus       127 --------~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga  196 (356)
T 1pl8_A          127 --------NLCRFYKHNAAFCYKLPDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA  196 (356)
T ss_dssp             --------SCBSEEEEEGGGEEECCTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             --------ccccEEEeehHHEEECcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence                    9999999999999999999999999876 4889999986 78899999999999999999999999999998


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      .+|++++++++++++++++|+++++++......++.+.+++.+++++|+||||+|.+..+..++++++++ |+++.+|..
T Consensus       197 ~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~  275 (356)
T 1pl8_A          197 AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLG  275 (356)
T ss_dssp             SEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCC
T ss_pred             CEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEecC
Confidence            7899999999999999999999999987100156777888877668999999999987689999999998 999999874


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                      .  ....++...++.+++++.+++..    .++++++++++++|+++++++++++|+++++++|++.+.++..+|+++++
T Consensus       276 ~--~~~~~~~~~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~  349 (356)
T 1pl8_A          276 S--EMTTVPLLHAAIREVDIKGVFRY----CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKC  349 (356)
T ss_dssp             C--SCCCCCHHHHHHTTCEEEECCSC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             C--CCCccCHHHHHhcceEEEEeccc----HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCCCceEEEEeC
Confidence            3  34567777788899999988532    46899999999999998888899999999999999999888445999998


Q ss_pred             C
Q 020435          325 G  325 (326)
Q Consensus       325 ~  325 (326)
                      +
T Consensus       350 ~  350 (356)
T 1pl8_A          350 D  350 (356)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=8.6e-49  Score=358.49  Aligned_cols=292  Identities=23%  Similarity=0.350  Sum_probs=259.4

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      +..+|+++|||++|+|+++|++|+++++||||++.+...|+.|.+|+.+++++|.....   .|...+|           
T Consensus        50 ~~~~P~i~G~E~~G~V~~vG~~V~~~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~~~G-----------  115 (346)
T 4a2c_A           50 AHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSRRDG-----------  115 (346)
T ss_dssp             SSSSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTTBCC-----------
T ss_pred             CCCCCccccEEEEEEEEEECCCcccccCCCeEEeeeccCCCCcccccCCccccCCCccc---ccCCCCc-----------
Confidence            35689999999999999999999999999999999999999999999999999988876   7777777           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  164 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~  164 (326)
                              +|+||++++++.++++|+++|+++||+++ ++.++++ +.+..++++|++|||+|+|++|++++|+||++|+
T Consensus       116 --------~~aey~~v~~~~~~~iP~~l~~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~  185 (346)
T 4a2c_A          116 --------GFAEYIVVKRKNVFALPTDMPIEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGA  185 (346)
T ss_dssp             --------SSBSEEEEEGGGEEECCTTSCGGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             --------ccccccccchheEEECCCCCCHHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCC
Confidence                    99999999999999999999999999876 5555555 6788999999999999999999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..+++++++++++++++++|+++++|+.+   .++.+.++.++++ ++|+|+||+|.+..++.++++++++ |+++.+|.
T Consensus       186 ~~vi~~~~~~~k~~~a~~lGa~~~i~~~~---~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~-G~~v~~g~  261 (346)
T 4a2c_A          186 KSVTAIDISSEKLALAKSFGAMQTFNSSE---MSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGT  261 (346)
T ss_dssp             SEEEEEESCHHHHHHHHHTTCSEEEETTT---SCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT-CEEEECCC
T ss_pred             cEEEEEechHHHHHHHHHcCCeEEEeCCC---CCHHHHHHhhcccCCcccccccccccchhhhhhheecCC-eEEEEEec
Confidence            67788999999999999999999999998   8888888888888 9999999999988899999999998 99999997


Q ss_pred             CCCCCc-ccccHHHHHhcCCEEEeeeccCCC--CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-E
Q 020435          244 DQPGSQ-LSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-R  319 (326)
Q Consensus       244 ~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k  319 (326)
                      ...... ...+...++.|++++.|++.+...  ..++++++++++++|+++++++++++|+++++++|++.+.+++.. |
T Consensus       262 ~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GK  341 (346)
T 4a2c_A          262 LHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGK  341 (346)
T ss_dssp             CSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSE
T ss_pred             cCCCccccccCHHHHhhceeEEEEEeccccCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceE
Confidence            654322 234555677889999998764322  245799999999999999999999999999999999999988765 9


Q ss_pred             EEEEe
Q 020435          320 CVIWM  324 (326)
Q Consensus       320 ~vv~~  324 (326)
                      +||++
T Consensus       342 vVl~P  346 (346)
T 4a2c_A          342 VLLIP  346 (346)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            99864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=7.1e-49  Score=359.30  Aligned_cols=287  Identities=24%  Similarity=0.404  Sum_probs=243.9

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.+++++|.....   .|...+|            
T Consensus        59 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G------------  123 (348)
T 2d8a_A           59 IKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG------------  123 (348)
T ss_dssp             CCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCCC------------CEE---TTTSSCC------------
T ss_pred             CCCCCccCccceEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCCCCC------------
Confidence            4689999999999999999999999999999999999999999999999999987764   5555556            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                             +|+||++++++.++++|+++|+++||+++ +++|||+++ +.+++ +|++|||+|+|++|++++|+|+..|+.
T Consensus       124 -------~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~  193 (348)
T 2d8a_A          124 -------VFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAY  193 (348)
T ss_dssp             -------SSBSEEEEEGGGEEECCTTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             -------cCcceEEeChHHeEECCCCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence                   99999999999999999999999999886 889999987 77889 999999999999999999999999986


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +|+++++++++.++++++|+++++++.+   .++.+.+++.+++ ++|+||||+|.+..++.++++++++ |+++.+|..
T Consensus       194 ~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~  269 (348)
T 2d8a_A          194 PVIVSEPSDFRRELAKKVGADYVINPFE---EDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLY  269 (348)
T ss_dssp             SEEEECSCHHHHHHHHHHTCSEEECTTT---SCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCC
T ss_pred             EEEEECCCHHHHHHHHHhCCCEEECCCC---cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccC
Confidence            7999999999999999999999999887   7899999999988 9999999999977689999999998 999999975


Q ss_pred             CCCCcccccH-HHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeec-cccHHHHHHHHHcCceeEEEE
Q 020435          245 QPGSQLSLSS-FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKCLRCVI  322 (326)
Q Consensus       245 ~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~-l~~i~~a~~~~~~~~~~k~vv  322 (326)
                      ..  ...++. ..++.+++++.+++...  ..++++++++++++|+++++++++++|+ ++++++|++.++++..+|++|
T Consensus       270 ~~--~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~gKvvi  345 (348)
T 2d8a_A          270 PG--KVTIDFNNLIIFKALTIYGITGRH--LWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVF  345 (348)
T ss_dssp             SS--CCCCCHHHHTTTTTCEEEECCCCC--SHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHTTCCSEEEE
T ss_pred             CC--CcccCchHHHHhCCcEEEEecCCC--cHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhCCCceEEEE
Confidence            32  355666 66778899999985432  1467999999999999888888999999 999999999998755559999


Q ss_pred             EeC
Q 020435          323 WMG  325 (326)
Q Consensus       323 ~~~  325 (326)
                      .++
T Consensus       346 ~~~  348 (348)
T 2d8a_A          346 MLK  348 (348)
T ss_dssp             EC-
T ss_pred             eeC
Confidence            874

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.5e-49  Score=360.13  Aligned_cols=281  Identities=25%  Similarity=0.418  Sum_probs=249.4

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      +..+|.++|||++|+|+++|++|++|++||||+..+..+|+.|.+|+.+++++|.....   .|+..+|           
T Consensus        70 ~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-----------  135 (359)
T 1h2b_A           70 QPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-----------  135 (359)
T ss_dssp             CCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-----------
T ss_pred             CCCCCeecCcCceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccCCCC-----------
Confidence            34789999999999999999999999999999988889999999999999999987764   5655556           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccc---cccchhhhhhhhhhhh-cccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC---LLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa---~l~~~~~ta~~~l~~~-~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                              +|+||++++++.++++|+++|+++||   .+++++.|||+++.+. +++++|++|||+|+|++|++++|+||
T Consensus       136 --------~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak  207 (359)
T 1h2b_A          136 --------GFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLK  207 (359)
T ss_dssp             --------SSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHH
T ss_pred             --------cccceEEechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHH
Confidence                    99999999999999999999999999   7888899999987665 89999999999999999999999999


Q ss_pred             Hc-CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHH--HHHHHHHHhhcCCc
Q 020435          161 LC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLAS--LVQEAYACCRKGWG  236 (326)
Q Consensus       161 ~~-g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~--~~~~~~~~l~~~~G  236 (326)
                      +. |+ +|++++++++++++++++|+++++|+.+   . +.+.+++++++ ++|+||||+|++.  .+..++++  ++ |
T Consensus       208 ~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~-~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~-G  279 (359)
T 1h2b_A          208 VMTPA-TVIALDVKEEKLKLAERLGADHVVDARR---D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RM-G  279 (359)
T ss_dssp             HHCCC-EEEEEESSHHHHHHHHHTTCSEEEETTS---C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EE-E
T ss_pred             HcCCC-eEEEEeCCHHHHHHHHHhCCCEEEeccc---h-HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CC-C
Confidence            99 99 8999999999999999999999999887   6 88889999988 9999999999985  58888877  87 9


Q ss_pred             EEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc
Q 020435          237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  316 (326)
Q Consensus       237 ~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~  316 (326)
                      +++.+|.....   .++...++.+++++.+++...   .++++++++++++|++++  .+ ++|+++++++|++.+.+++
T Consensus       280 ~~v~~g~~~~~---~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~--~i-~~~~l~~~~~A~~~~~~~~  350 (359)
T 1h2b_A          280 RLIIVGYGGEL---RFPTIRVISSEVSFEGSLVGN---YVELHELVTLALQGKVRV--EV-DIHKLDEINDVLERLEKGE  350 (359)
T ss_dssp             EEEECCCSSCC---CCCHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSCCC--CE-EEEEGGGHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCC---CCCHHHHHhCCcEEEEecCCC---HHHHHHHHHHHHcCCCcc--eE-EEEeHHHHHHHHHHHHcCC
Confidence            99999975422   566677788899999986432   467999999999997754  47 9999999999999999887


Q ss_pred             e-eEEEEEe
Q 020435          317 C-LRCVIWM  324 (326)
Q Consensus       317 ~-~k~vv~~  324 (326)
                      . +|+|+++
T Consensus       351 ~~gKvvv~~  359 (359)
T 1h2b_A          351 VLGRAVLIP  359 (359)
T ss_dssp             CSSEEEEEC
T ss_pred             CceEEEeeC
Confidence            6 4999874

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=7.2e-49  Score=361.27  Aligned_cols=288  Identities=22%  Similarity=0.322  Sum_probs=253.2

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~   84 (326)
                      .++|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.++++.|.....   .|.. .+|           
T Consensus        70 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~~G-----------  135 (363)
T 3m6i_A           70 VECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF---LSTPPVPG-----------  135 (363)
T ss_dssp             CCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTSTTSCC-----------
T ss_pred             CCCCcccCcceEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc---cCCCCCCc-----------
Confidence            4689999999999999999999999999999999999999999999999999988775   4443 445           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  164 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~  164 (326)
                              +|+||++++++.++++|+ +|+++||++. +++|||+++ +.+++++|++|||+|+|++|++++|+||+.|+
T Consensus       136 --------~~aey~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga  204 (363)
T 3m6i_A          136 --------LLRRYVNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGA  204 (363)
T ss_dssp             --------SCBSEEEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             --------cceeEEEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence                    999999999999999999 9999999885 889999986 88999999999999999999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCC--CCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKN--CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ++|++++++++++++++++ +++++++..  ...+++.+.+++.+++ ++|+||||+|++..+..++++++++ |+++.+
T Consensus       205 ~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~  282 (363)
T 3m6i_A          205 CPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVI  282 (363)
T ss_dssp             CSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTT-CEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEE
Confidence            4599999999999999999 666655431  0126788899999988 9999999999987689999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcC-ce-eE
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG-KC-LR  319 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~-~~-~k  319 (326)
                      |...  ....++...++.+++++.+++..    .++++++++++++|+++++++++++|+++++++|++.+.++ .. .|
T Consensus       283 G~~~--~~~~~~~~~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~K  356 (363)
T 3m6i_A          283 GVGK--NEIQIPFMRASVREVDLQFQYRY----CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIK  356 (363)
T ss_dssp             CCCC--SCCCCCHHHHHHHTCEEEECCSC----SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSE
T ss_pred             ccCC--CCccccHHHHHhcCcEEEEccCC----HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEE
Confidence            9754  33556777788899999998643    57899999999999999889999999999999999999987 33 49


Q ss_pred             EEEEeCC
Q 020435          320 CVIWMGE  326 (326)
Q Consensus       320 ~vv~~~~  326 (326)
                      ++++.++
T Consensus       357 vvi~~~~  363 (363)
T 3m6i_A          357 VQIQSLE  363 (363)
T ss_dssp             EEEECC-
T ss_pred             EEEecCC
Confidence            9999864

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=5.6e-49  Score=360.51  Aligned_cols=294  Identities=25%  Similarity=0.349  Sum_probs=254.6

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.++++.|.........+...+|            
T Consensus        51 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G------------  118 (352)
T 3fpc_A           51 ERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDG------------  118 (352)
T ss_dssp             CCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCC------------
T ss_pred             CCCCcccCCcceEEEEEECCCCCcCCCCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCC------------
Confidence            46899999999999999999999999999999999999999999999999988655422112333344            


Q ss_pred             ccccccccccceEEeccc--ceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC
Q 020435           86 HHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG  163 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~--~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g  163 (326)
                             +|+||+.+++.  .++++|+++|+++||+++.+++|||+++ +.+++++|++|||+|+|++|++++|+|++.|
T Consensus       119 -------~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G  190 (352)
T 3fpc_A          119 -------VFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLG  190 (352)
T ss_dssp             -------SSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTT
T ss_pred             -------cccceEEeccccCeEEECCCCCCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence                   99999999976  8999999999999999999999999976 8899999999999999999999999999999


Q ss_pred             CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          164 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       164 ~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +.+|++++++++++++++++|+++++++.+   .++.+.+++.+++ ++|+||||+|.+..+..++++++++ |+++.+|
T Consensus       191 a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~-G~~v~~G  266 (352)
T 3fpc_A          191 AGRIFAVGSRKHCCDIALEYGATDIINYKN---GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVN  266 (352)
T ss_dssp             CSSEEEECCCHHHHHHHHHHTCCEEECGGG---SCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECC
T ss_pred             CcEEEEECCCHHHHHHHHHhCCceEEcCCC---cCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEec
Confidence            877999999999999999999999999988   8899999999998 9999999999976699999999998 9999999


Q ss_pred             cCCCCCcccccHHH--HHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeec-cccHHHHHHHHHcCce--
Q 020435          243 VDQPGSQLSLSSFE--VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKC--  317 (326)
Q Consensus       243 ~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~-l~~i~~a~~~~~~~~~--  317 (326)
                      ...+....+++...  +..+++++.+++...  .+++++++++++++|+++++++++++|+ ++++++|++.+.+++.  
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~  344 (352)
T 3fpc_A          267 YLGEGDNIDIPRSEWGVGMGHKHIHGGLCPG--GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDL  344 (352)
T ss_dssp             CCCSCSEEEEETTTTGGGTBCEEEEEBCCCC--HHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTC
T ss_pred             ccCCCCceecchhHhhhhccccEEEEeeccC--chhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCc
Confidence            76544444444322  234678888875321  2457999999999999999889999999 9999999999988643  


Q ss_pred             eEEEEEeC
Q 020435          318 LRCVIWMG  325 (326)
Q Consensus       318 ~k~vv~~~  325 (326)
                      .|++|+++
T Consensus       345 ~Kvvi~~~  352 (352)
T 3fpc_A          345 IKPVVILA  352 (352)
T ss_dssp             SEEEEECC
T ss_pred             EEEEEEeC
Confidence            49999874

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=3.8e-49  Score=360.36  Aligned_cols=287  Identities=23%  Similarity=0.340  Sum_probs=255.7

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.+++++|.....   .|+..+|            
T Consensus        55 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G------------  119 (343)
T 2dq4_A           55 IRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVDRDG------------  119 (343)
T ss_dssp             CCSSEECCCEEEEEEEEECTTCCSSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC------------
T ss_pred             CCCCCcCCccceEEEEEECCCCCcCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCCCCC------------
Confidence            5689999999999999999999999999999999999999999999999999987764   4555556            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  165 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~  165 (326)
                             +|+||++++++.++++|+++|+++||++. +++|||+++.+.+++ +|++|||+|+|++|++++|+|+..|+.
T Consensus       120 -------~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~  190 (343)
T 2dq4_A          120 -------GFAEYVVVPAENAWVNPKDLPFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAG  190 (343)
T ss_dssp             -------SSBSEEEEEGGGEEEECTTSCHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             -------cceeEEEEchHHeEECCCCCCHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence                   99999999999999999999999999884 788999987547889 999999999999999999999999986


Q ss_pred             EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          166 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       166 ~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      +|+++++++++.++++++ +++++++.+   .++.+.+++.+++++|+||||+|.+..++.++++++++ |+++.+|...
T Consensus       191 ~Vi~~~~~~~~~~~~~~l-a~~v~~~~~---~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~  265 (343)
T 2dq4_A          191 PILVSDPNPYRLAFARPY-ADRLVNPLE---EDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPS  265 (343)
T ss_dssp             SEEEECSCHHHHGGGTTT-CSEEECTTT---SCHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCS
T ss_pred             EEEEECCCHHHHHHHHHh-HHhccCcCc---cCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC
Confidence            799999999999999999 999999887   78889999888339999999999976699999999998 9999998743


Q ss_pred             CCCcccccH-HHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEEEe
Q 020435          246 PGSQLSLSS-FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  324 (326)
Q Consensus       246 ~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~  324 (326)
                        ....++. ..++.|++++.+++...  ..++++++++++++|+++++++++++|+++++++|++.+.+++.+|+++++
T Consensus       266 --~~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvv~~~  341 (343)
T 2dq4_A          266 --DPIRFDLAGELVMRGITAFGIAGRR--LWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVILDP  341 (343)
T ss_dssp             --SCEEECHHHHTGGGTCEEEECCSCC--TTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSCSEEEEET
T ss_pred             --CCceeCcHHHHHhCceEEEEeecCC--CHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCceEEEEee
Confidence              3456777 67788899999985431  246799999999999988888899999999999999999887768999987


Q ss_pred             C
Q 020435          325 G  325 (326)
Q Consensus       325 ~  325 (326)
                      +
T Consensus       342 ~  342 (343)
T 2dq4_A          342 K  342 (343)
T ss_dssp             T
T ss_pred             C
Confidence            6

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.1e-48  Score=355.56  Aligned_cols=287  Identities=26%  Similarity=0.391  Sum_probs=253.0

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~   84 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.+++++|.....   .|.. .+|           
T Consensus        58 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~G-----------  123 (352)
T 1e3j_A           58 VKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDDG-----------  123 (352)
T ss_dssp             CCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBCC-----------
T ss_pred             CCCCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCCc-----------
Confidence            3579999999999999999999999999999999999999999999999999987664   4442 345           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  164 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~  164 (326)
                              +|+||++++++.++++|+++|+++||++ .+++|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+
T Consensus       124 --------~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga  193 (352)
T 1e3j_A          124 --------NLARYYVHAADFCHKLPDNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA  193 (352)
T ss_dssp             --------SCBSEEEEEGGGEEECCTTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             --------cceeEEEeChHHeEECcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence                    9999999999999999999999999876 4889999986 78899999999999999999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC---C-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEE
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD---G-GADYCFECVGLASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~---~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~  240 (326)
                       +|++++++++++++++++|+++++++.+  ..++.+.+++.++   + ++|+||||+|....++.++++++++ |+++.
T Consensus       194 -~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~  269 (352)
T 1e3j_A          194 -FVVCTARSPRRLEVAKNCGADVTLVVDP--AKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLML  269 (352)
T ss_dssp             -EEEEEESCHHHHHHHHHTTCSEEEECCT--TTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEE
T ss_pred             -EEEEEcCCHHHHHHHHHhCCCEEEcCcc--cccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEE
Confidence             7999999999999999999999998762  1466778888775   4 9999999999987689999999998 99999


Q ss_pred             eccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc--ee
Q 020435          241 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CL  318 (326)
Q Consensus       241 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~--~~  318 (326)
                      +|...  ....++...++.+++++.+++..    .++++++++++++|+++++++++++|+++++++|++.+.+++  ..
T Consensus       270 ~G~~~--~~~~~~~~~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~  343 (352)
T 1e3j_A          270 VGMGS--QMVTVPLVNACAREIDIKSVFRY----CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTI  343 (352)
T ss_dssp             CSCCS--SCCCCCHHHHHTTTCEEEECCSC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCS
T ss_pred             EecCC--CCccccHHHHHhcCcEEEEeccc----hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCce
Confidence            98743  34556777788889999988532    468999999999999888888999999999999999998886  45


Q ss_pred             EEEEEeCC
Q 020435          319 RCVIWMGE  326 (326)
Q Consensus       319 k~vv~~~~  326 (326)
                      |+++++++
T Consensus       344 Kvvi~~~~  351 (352)
T 1e3j_A          344 KVMISCRQ  351 (352)
T ss_dssp             EEEEECCC
T ss_pred             EEEEecCC
Confidence            99998863

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=7.5e-48  Score=351.24  Aligned_cols=284  Identities=26%  Similarity=0.429  Sum_probs=251.0

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|+.+++++|.....   .|+..+|           
T Consensus        53 ~~~p~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-----------  118 (339)
T 1rjw_A           53 PKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-----------  118 (339)
T ss_dssp             CCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-----------
T ss_pred             CCCCeeccccceEEEEEECCCCCcCCCCCEEEEecCCCCCCCCchhhCcCcccCCCcce---eecCCCC-----------
Confidence            4689999999999999999999999999999987654 599999999999999987664   5555566           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  164 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~  164 (326)
                              +|+||++++++.++++|+++|+++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+..|+
T Consensus       119 --------~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga  189 (339)
T 1rjw_A          119 --------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL  189 (339)
T ss_dssp             --------SSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECCSTTHHHHHHHHHHTTC
T ss_pred             --------cceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence                    99999999999999999999999999999999999998655 489999999999998899999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       +|+++++++++.+.++++|+++++++.+   .++.+.+++.+ +++|++|||+|.+..++.++++++++ |+++.+|..
T Consensus       190 -~Vi~~~~~~~~~~~~~~lGa~~~~d~~~---~~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~  263 (339)
T 1rjw_A          190 -NVVAVDIGDEKLELAKELGADLVVNPLK---EDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLP  263 (339)
T ss_dssp             -EEEEECSCHHHHHHHHHTTCSEEECTTT---SCHHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCC
T ss_pred             -EEEEEeCCHHHHHHHHHCCCCEEecCCC---ccHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEeccc
Confidence             9999999999999999999999999887   67888888877 68999999999976699999999998 999999875


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce-eEEEEE
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  323 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~-~k~vv~  323 (326)
                      .  ....++...++.+++++.++....   .++++++++++++|++++.   +++|+++++++|++.+.+++. +|++++
T Consensus       264 ~--~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvi~  335 (339)
T 1rjw_A          264 P--EEMPIPIFDTVLNGIKIIGSIVGT---RKDLQEALQFAAEGKVKTI---IEVQPLEKINEVFDRMLKGQINGRVVLT  335 (339)
T ss_dssp             S--SEEEEEHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEE
T ss_pred             C--CCCccCHHHHHhCCcEEEEeccCC---HHHHHHHHHHHHcCCCCcc---EEEEcHHHHHHHHHHHHcCCCceEEEEe
Confidence            4  235677777788899999986433   4679999999999987653   478999999999999998865 499999


Q ss_pred             eCC
Q 020435          324 MGE  326 (326)
Q Consensus       324 ~~~  326 (326)
                      +++
T Consensus       336 ~~~  338 (339)
T 1rjw_A          336 LED  338 (339)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            864

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.6e-48  Score=357.22  Aligned_cols=290  Identities=26%  Similarity=0.356  Sum_probs=251.9

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCC------CccCCCEEeecCCCCCCCCcccc-CCCCCCCCCCCCCCCCCC-----
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVD------GVVEGDVVIPHFLADCTECVGCR-SKKGNLCSAFPFKISPWM-----   69 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~------~~~vGd~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~-----   69 (326)
                      .+|...+|.++|||++|+|+++| +|+      +|++||||++.+..+|+.|.+|+ .+++++|.....   .|.     
T Consensus        65 ~~~~~~~P~v~GhE~~G~V~~vG-~V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~~  140 (380)
T 1vj0_A           65 EDPRVPLPIILGHEGAGRVVEVN-GEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGCS  140 (380)
T ss_dssp             CCTTCCSSBCCCCEEEEEEEEES-SCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCSS
T ss_pred             CCCCCCCCcccCcCcEEEEEEeC-CccccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---eccccccC
Confidence            34445789999999999999999 999      99999999999999999999999 999999987653   343     


Q ss_pred             ---CCCCCccccccCCcccccccccccccceEEe-cccceEEcCCCCCcc-ccccccchhhhhhhhhhhhcc-cCCCCEE
Q 020435           70 ---PRDQTSRFKDLRGETIHHFVSVSSFSEYTVL-DIAHVVKVDPTVPPN-RACLLSCGVSTGVGAAWRTAN-VEVGSTV  143 (326)
Q Consensus        70 ---~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~v-~~~~~~~ip~~~s~~-~aa~l~~~~~ta~~~l~~~~~-~~~~~~v  143 (326)
                         ..+|                   +|+||+++ +++.++++|+++|++ +|++++ +++|||+++ +.++ +++|++|
T Consensus       141 ~~~~~~G-------------------~~aey~~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~V  199 (380)
T 1vj0_A          141 EYPHLRG-------------------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTV  199 (380)
T ss_dssp             STTCCCS-------------------SSBSEEEECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEE
T ss_pred             CCCCCCc-------------------cccceEEEcccceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEE
Confidence               2234                   99999999 999999999999999 777666 999999987 6688 9999999


Q ss_pred             EEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCC---CCCCccHHHHHHHhcCC-CccEEEEcCC
Q 020435          144 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK---NCGDKSVSQIIIDMTDG-GADYCFECVG  219 (326)
Q Consensus       144 lI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~---~~~~~~~~~~i~~~~~~-g~d~v~d~~g  219 (326)
                      ||+|+|++|++++|+|+..|+.+|++++++++++++++++|+++++++.   +   .++.+.+++.+++ ++|+||||+|
T Consensus       200 lV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~---~~~~~~v~~~~~g~g~Dvvid~~g  276 (380)
T 1vj0_A          200 VIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSV---EERRKAIMDITHGRGADFILEATG  276 (380)
T ss_dssp             EEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCH---HHHHHHHHHHTTTSCEEEEEECSS
T ss_pred             EEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCc---chHHHHHHHHhCCCCCcEEEECCC
Confidence            9999999999999999999933999999999999999999999999987   5   7888899999988 9999999999


Q ss_pred             cHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHH-HHhcCCEEEeeeccCCCCCCCHHHHHHHHhC--CCCCCCcce
Q 020435          220 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE-VLHSGKILMGSLFGGLKAKSDIPILLKRYMD--KELELDKFV  296 (326)
Q Consensus       220 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~i  296 (326)
                      .+..+..++++++++ |+++.+|.........++... ++.+++++.+++.+.   .++++++++++++  |++  ++++
T Consensus       277 ~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~~~g~l--~~~i  350 (380)
T 1vj0_A          277 DSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD---TSHFVKTVSITSRNYQLL--SKLI  350 (380)
T ss_dssp             CTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC---HHHHHHHHHHHHTCHHHH--GGGC
T ss_pred             CHHHHHHHHHHHhcC-CEEEEEecCCCCCCeeEchHHHHHhCCeEEEEeecCC---HHHHHHHHHHHHhhcCCe--eeEE
Confidence            876689999999998 999999975412245677777 778899999986543   4679999999999  976  5668


Q ss_pred             eeeeccccHHHHHHHHHcCceeEEEEEeC
Q 020435          297 THEMKFEEINSAFDLLIKGKCLRCVIWMG  325 (326)
Q Consensus       297 ~~~~~l~~i~~a~~~~~~~~~~k~vv~~~  325 (326)
                      +++|+++++++|++.+.+++..|++|+++
T Consensus       351 ~~~~~l~~~~~A~~~~~~~~~~Kvvl~~~  379 (380)
T 1vj0_A          351 THRLPLKEANKALELMESREALKVILYPE  379 (380)
T ss_dssp             CEEEEGGGHHHHHHHHHHTSCSCEEEECC
T ss_pred             EEEEeHHHHHHHHHHHhcCCCceEEEEeC
Confidence            89999999999999998765449999875

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-47  Score=349.89  Aligned_cols=285  Identities=23%  Similarity=0.350  Sum_probs=252.8

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+...|+.|.+|+.+++++|.....   .|+..+|            
T Consensus        55 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~~~G------------  119 (343)
T 2eih_A           55 LPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEHRHG------------  119 (343)
T ss_dssp             CCSSEECCSEEEEEEEEECSSCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTSSCC------------
T ss_pred             CCCCcccccceEEEEEEECCCCCCCCCCCEEEECCCCCcccchhhccCcccccccccc---cCcCCCc------------
Confidence            4689999999999999999999999999999999999999999999999999987764   5655556            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                             +|+||++++++.++++|+++|+++||+++++++|||+++.+.++++++++|||+|+ |++|++++|+++..|+
T Consensus       120 -------~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~  192 (343)
T 2eih_A          120 -------TYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA  192 (343)
T ss_dssp             -------SSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC
T ss_pred             -------cceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC
Confidence                   99999999999999999999999999999999999998877689999999999998 9999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +|+++++++++.+.++++|+++++++.+   .++.+.+++.+++ ++|++||++|... ++.++++++++ |+++.+|.
T Consensus       193 -~Vi~~~~~~~~~~~~~~~ga~~~~d~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~  266 (343)
T 2eih_A          193 -RVIATAGSEDKLRRAKALGADETVNYTH---PDWPKEVRRLTGGKGADKVVDHTGALY-FEGVIKATANG-GRIAIAGA  266 (343)
T ss_dssp             -EEEEEESSHHHHHHHHHHTCSEEEETTS---TTHHHHHHHHTTTTCEEEEEESSCSSS-HHHHHHHEEEE-EEEEESSC
T ss_pred             -EEEEEeCCHHHHHHHHhcCCCEEEcCCc---ccHHHHHHHHhCCCCceEEEECCCHHH-HHHHHHhhccC-CEEEEEec
Confidence             9999999999999999999999999877   6788889888877 9999999999554 89999999998 99999987


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce-eEEEE
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  322 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~-~k~vv  322 (326)
                      .... ...++...++.+++++.++...   ..++++++++++++|+++  +.++++|+++++++|++.+.+++. +|+++
T Consensus       267 ~~~~-~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv  340 (343)
T 2eih_A          267 SSGY-EGTLPFAHVFYRQLSILGSTMA---SKSRLFPILRFVEEGKLK--PVVGQVLPLEAAAEGHRLLEERRVFGKVVL  340 (343)
T ss_dssp             CCSC-CCCCCTTHHHHTTCEEEECCSC---CGGGHHHHHHHHHHTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEE
T ss_pred             CCCC-cCccCHHHHHhCCcEEEEecCc---cHHHHHHHHHHHHcCCCC--CceeEEeeHHHHHHHHHHHHcCCCceEEEE
Confidence            5432 2346666677889999988532   256899999999999765  568899999999999999988765 49999


Q ss_pred             Ee
Q 020435          323 WM  324 (326)
Q Consensus       323 ~~  324 (326)
                      ++
T Consensus       341 ~~  342 (343)
T 2eih_A          341 QV  342 (343)
T ss_dssp             EC
T ss_pred             ec
Confidence            76

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=2.4e-47  Score=348.80  Aligned_cols=286  Identities=25%  Similarity=0.379  Sum_probs=248.7

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCC--CCCCCCCCCCccccccCC
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK--ISPWMPRDQTSRFKDLRG   82 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~g~~~~~~~~~   82 (326)
                      +..+|.++|||++|+|+++|++|++|++||||++.+...|+.|.+|+.+++++|......  ...|+..+|         
T Consensus        53 ~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G---------  123 (345)
T 3jv7_A           53 AYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPG---------  123 (345)
T ss_dssp             CSCSSEECCSEEEEEEEEECTTCCSCCTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCC---------
T ss_pred             CCCCCcccCcccEEEEEEECCCCCCCCCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCc---------
Confidence            357899999999999999999999999999999999999999999999999999432210  002333444         


Q ss_pred             cccccccccccccceEEec-ccceEEcCCCCCccccccccchhhhhhhhhhh-hcccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           83 ETIHHFVSVSSFSEYTVLD-IAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        83 ~~~~~~~~~g~~a~~~~v~-~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~-~~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                                +|+||++++ ++.++++|+ +++++||+++++++|||+++.+ ..++++|++|||+|+|++|++++|+||
T Consensus       124 ----------~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~  192 (345)
T 3jv7_A          124 ----------SMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILR  192 (345)
T ss_dssp             ----------SSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHH
T ss_pred             ----------eeeEEEEecchhceEeCCC-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHH
Confidence                      999999999 999999999 9999999999999999998766 458999999999999999999999999


Q ss_pred             Hc-CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          161 LC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       161 ~~-g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      +. ++ +|++++++++++++++++|+++++++++    ++.+.+++++++ ++|+||||+|++..++.++++++++ |++
T Consensus       193 ~~g~~-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~----~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~-G~i  266 (345)
T 3jv7_A          193 AVSAA-RVIAVDLDDDRLALAREVGADAAVKSGA----GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHI  266 (345)
T ss_dssp             HHCCC-EEEEEESCHHHHHHHHHTTCSEEEECST----THHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEE-EEE
T ss_pred             HcCCC-EEEEEcCCHHHHHHHHHcCCCEEEcCCC----cHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcC-CEE
Confidence            98 56 9999999999999999999999998754    788899999988 9999999999996699999999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      +.+|.... ....++. .++.+++++.++....   .++++++++++++|++++   ++++|+++++++|++.+.+++..
T Consensus       267 v~~G~~~~-~~~~~~~-~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~---~~~~~~l~~~~~A~~~~~~~~~~  338 (345)
T 3jv7_A          267 SVVGIHAG-AHAKVGF-FMIPFGASVVTPYWGT---RSELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIR  338 (345)
T ss_dssp             EECSCCTT-CCEEEST-TTSCTTCEEECCCSCC---HHHHHHHHHHHHTTCCCC---CEEEECSTTHHHHHHHHHHTCCS
T ss_pred             EEECCCCC-CCCCcCH-HHHhCCCEEEEEecCC---HHHHHHHHHHHHcCCCce---EEEEEcHHHHHHHHHHHHcCCCc
Confidence            99997543 2455554 6677899999986443   468999999999998876   35899999999999999998875


Q ss_pred             -EEEEEe
Q 020435          319 -RCVIWM  324 (326)
Q Consensus       319 -k~vv~~  324 (326)
                       |+||.+
T Consensus       339 Gkvvv~p  345 (345)
T 3jv7_A          339 GRGVVVP  345 (345)
T ss_dssp             SEEEECC
T ss_pred             eeEEeCC
Confidence             999864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=7e-48  Score=359.34  Aligned_cols=286  Identities=20%  Similarity=0.293  Sum_probs=254.3

Q ss_pred             CCCCcccCCceeEEEEEecCCC------CCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 020435            6 AVFPRILGHEAIGVVESVGENV------DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD   79 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v------~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~   79 (326)
                      .++|.++|||++|+|+++|++|      ++|++||||++.+..+|+.|.+|+.+++++|.....   .|+..+|      
T Consensus        89 ~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~~~G------  159 (404)
T 3ip1_A           89 TGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFNVDG------  159 (404)
T ss_dssp             BCSSEECCCEEEEEEEEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC------
T ss_pred             CCCCcccCccceEEEEEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCCCCC------
Confidence            4789999999999999999999      899999999999999999999999999999998775   6766667      


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCc------cccccccchhhhhhhhhhhh-cccCCCCEEEEEccCHHH
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP------NRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIG  152 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~------~~aa~l~~~~~ta~~~l~~~-~~~~~~~~vlI~Gag~~G  152 (326)
                                   +|+||++++++.++++|++++.      .++|+++.+++|||+++... +++++|++|||+|+|++|
T Consensus       160 -------------~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG  226 (404)
T 3ip1_A          160 -------------AFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIG  226 (404)
T ss_dssp             -------------SSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHH
T ss_pred             -------------CCcceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHH
Confidence                         9999999999999999998863      45888888999999987655 489999999999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcH-HHHHHHHHH
Q 020435          153 LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA-SLVQEAYAC  230 (326)
Q Consensus       153 ~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~-~~~~~~~~~  230 (326)
                      ++++|+||..|+.+|++++++++++++++++|+++++++.+   .++.+.+++++++ ++|+||||+|++ ..+..+.++
T Consensus       227 ~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~  303 (404)
T 3ip1_A          227 LAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTK---ENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEV  303 (404)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTT---SCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCC---CCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHH
Confidence            99999999999988999999999999999999999999988   8899999999998 999999999998 347777788


Q ss_pred             h----hcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHH
Q 020435          231 C----RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN  306 (326)
Q Consensus       231 l----~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~  306 (326)
                      |    +++ |+++.+|...  ....++...++.+++++.++....  ..++++++++++++| +++.++++++|++++++
T Consensus       304 l~~~~~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~  377 (404)
T 3ip1_A          304 IWRARGIN-ATVAIVARAD--AKIPLTGEVFQVRRAQIVGSQGHS--GHGTFPRVISLMASG-MDMTKIISKTVSMEEIP  377 (404)
T ss_dssp             HHHCSCCC-CEEEECSCCC--SCEEECHHHHHHTTCEEEECCCCC--STTHHHHHHHHHHTT-CCGGGGCCEEECGGGHH
T ss_pred             HHhccCCC-cEEEEeCCCC--CCCcccHHHHhccceEEEEecCCC--chHHHHHHHHHHHcC-CChhheEEEEeeHHHHH
Confidence            8    998 9999999764  345778888888999999986322  246899999999999 98888899999999999


Q ss_pred             HHHHHHHcCceeEEEEEeC
Q 020435          307 SAFDLLIKGKCLRCVIWMG  325 (326)
Q Consensus       307 ~a~~~~~~~~~~k~vv~~~  325 (326)
                      +|++.+..+   |++|+++
T Consensus       378 ~A~~~~~~G---Kvvl~~~  393 (404)
T 3ip1_A          378 EYIKRLQTD---KSLVKVT  393 (404)
T ss_dssp             HHHHHTTTC---TTCSCEE
T ss_pred             HHHHHHhCC---cEEEecC
Confidence            999999833   6666553

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=1.3e-47  Score=350.80  Aligned_cols=291  Identities=21%  Similarity=0.315  Sum_probs=241.8

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD   79 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~   79 (326)
                      |.++...+|.++|||++|+|+++|++|++|++||||++.+. ..|+.|.+|+.+++++|. ...   .++..+.     .
T Consensus        51 g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~---~~~~~~~-----~  121 (348)
T 3two_A           51 SEWKEGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVV---FTYDCLD-----S  121 (348)
T ss_dssp             TSSSCCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCT-TCE---ESSSSEE-----G
T ss_pred             CCCCCCCCCeecCcceeEEEEEECCCCCCCCCCCEEEEeCCcCCCCCChhHhCCCcccCc-ccc---ccccccc-----c
Confidence            34566789999999999999999999999999999988654 789999999999999998 332   3333220     0


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHH
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la  159 (326)
                          ...+....|+|+||++++++.++++|+++|+++||++++++.|||+++ +..++++|++|||+|+|++|++++|+|
T Consensus       122 ----~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla  196 (348)
T 3two_A          122 ----FHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYA  196 (348)
T ss_dssp             ----GGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHH
T ss_pred             ----cccCCcCCccccceEEechhhEEECCCCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHH
Confidence                000001124999999999999999999999999999999999999976 456999999999999999999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      +..|+ +|+++++++++.++++++|+++++ .+.   +.+        ..++|+||||+|++..+..++++++++ |+++
T Consensus       197 ~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-~~~---~~~--------~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv  262 (348)
T 3two_A          197 VAMGA-EVSVFARNEHKKQDALSMGVKHFY-TDP---KQC--------KEELDFIISTIPTHYDLKDYLKLLTYN-GDLA  262 (348)
T ss_dssp             HHTTC-EEEEECSSSTTHHHHHHTTCSEEE-SSG---GGC--------CSCEEEEEECCCSCCCHHHHHTTEEEE-EEEE
T ss_pred             HHCCC-eEEEEeCCHHHHHHHHhcCCCeec-CCH---HHH--------hcCCCEEEECCCcHHHHHHHHHHHhcC-CEEE
Confidence            99999 999999999999999999999998 332   221        118999999999985599999999998 9999


Q ss_pred             EeccCCCCCccc-ccHHHHH-hcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce
Q 020435          240 VLGVDQPGSQLS-LSSFEVL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC  317 (326)
Q Consensus       240 ~~g~~~~~~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~  317 (326)
                      .+|.... .... ++...++ .+++++.+++.+.   .++++++++++++|++++.  + ++|+++++++|++.+.+++.
T Consensus       263 ~~G~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~  335 (348)
T 3two_A          263 LVGLPPV-EVAPVLSVFDFIHLGNRKVYGSLIGG---IKETQEMVDFSIKHNIYPE--I-DLILGKDIDTAYHNLTHGKA  335 (348)
T ss_dssp             ECCCCCG-GGCCEEEHHHHHHTCSCEEEECCSCC---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCC
T ss_pred             EECCCCC-CCcccCCHHHHHhhCCeEEEEEecCC---HHHHHHHHHHHHhCCCCce--E-EEEEHHHHHHHHHHHHcCCC
Confidence            9987531 2233 6666777 8899999987543   4679999999999987763  4 89999999999999999887


Q ss_pred             e-EEEEEeCC
Q 020435          318 L-RCVIWMGE  326 (326)
Q Consensus       318 ~-k~vv~~~~  326 (326)
                      . |+||++++
T Consensus       336 ~gKvVi~~~~  345 (348)
T 3two_A          336 KFRYVIDMKK  345 (348)
T ss_dssp             CSEEEEEGGG
T ss_pred             ceEEEEecCC
Confidence            5 99999863

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=2.2e-47  Score=355.35  Aligned_cols=295  Identities=21%  Similarity=0.264  Sum_probs=251.1

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCC--CCCC---CCCCCCCCCCcccccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA--FPFK---ISPWMPRDQTSRFKDL   80 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~g~~~~g~~~~~~~   80 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+...|+.|.+|+.+++++|..  ....   ..+|+..         
T Consensus        58 ~~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~---------  128 (398)
T 2dph_A           58 VPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDL---------  128 (398)
T ss_dssp             CCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTB---------
T ss_pred             CCCCcccCCceEEEEEEECCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCcccccccccccccccc---------
Confidence            4689999999999999999999999999999999999999999999999999976  2100   0122210         


Q ss_pred             CCcccccccccccccceEEeccc--ceEEcCCCCCccc----cccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA  154 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~--~~~~ip~~~s~~~----aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~  154 (326)
                             ....|+|+||++++++  .++++|+++|+++    ||+++++++|||+++ +.+++++|++|||+|+|++|++
T Consensus       129 -------~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~  200 (398)
T 2dph_A          129 -------KGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRC  200 (398)
T ss_dssp             -------SSCCCSSBSEEEESSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHH
T ss_pred             -------CCCCceeeeeEEeccccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHH
Confidence                   0012499999999987  8999999999998    888999999999987 7889999999999999999999


Q ss_pred             HHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccH-HHHHHHhcCC-CccEEEEcCCcHH----------
Q 020435          155 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSV-SQIIIDMTDG-GADYCFECVGLAS----------  222 (326)
Q Consensus       155 a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~-~~~i~~~~~~-g~d~v~d~~g~~~----------  222 (326)
                      ++|+||++|+.+|++++++++++++++++|++ ++++.+   .++ .+.+++.+++ ++|+||||+|...          
T Consensus       201 aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~---~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~  276 (398)
T 2dph_A          201 AAAGARLLGAACVIVGDQNPERLKLLSDAGFE-TIDLRN---SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTE  276 (398)
T ss_dssp             HHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE-EEETTS---SSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSB
T ss_pred             HHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-EEcCCC---cchHHHHHHHHhCCCCCCEEEECCCCcccccccccccc
Confidence            99999999987899999999999999999995 888876   665 8889999988 9999999999752          


Q ss_pred             ----HHHHHHHHhhcCCcEEEEeccCCC-----------CCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhC
Q 020435          223 ----LVQEAYACCRKGWGKTIVLGVDQP-----------GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD  287 (326)
Q Consensus       223 ----~~~~~~~~l~~~~G~~v~~g~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~  287 (326)
                          .+..++++++++ |+++.+|...+           .....++...++.|++++.++...   ..++++++++++++
T Consensus       277 ~~~~~~~~~~~~l~~g-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~~~l~~~  352 (398)
T 2dph_A          277 TPNGALNSLFDVVRAG-GAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP---VTNYNRHLTEAILW  352 (398)
T ss_dssp             CTTHHHHHHHHHEEEE-EEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCC---GGGTHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHhcC-CEEEEeccccccccccccccccCCcccccHHHHhhcCCEEEEeccC---cHHHHHHHHHHHHc
Confidence                588999999998 99999987521           123456666778889999887432   24679999999999


Q ss_pred             CCCC--CCcceeeeeccccHHHHHHHHHcCceeEEEEEeC
Q 020435          288 KELE--LDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  325 (326)
Q Consensus       288 g~~~--~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~~  325 (326)
                      |+++  +.++++++|+++++++|++.+.+++.+|+||+++
T Consensus       353 g~l~~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvvv~~~  392 (398)
T 2dph_A          353 DQMPYLSKVMNIEVITLDQAPDGYAKFDKGSPAKFVIDPH  392 (398)
T ss_dssp             TCCHHHHHHHCEEEECSTTHHHHHHHHHTTCSCEEEECTT
T ss_pred             CCCCccchhhEEEEEcHHHHHHHHHHHhcCCceEEEEecC
Confidence            9988  7667889999999999999998876689999875

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=1.1e-46  Score=344.76  Aligned_cols=289  Identities=26%  Similarity=0.378  Sum_probs=257.4

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      .+| .++|.|+|||++|+|+++|++|++|++||||++.+. ..|+.|.+|..+.++.|.....   .+...+|       
T Consensus        49 ~~~-~~~p~i~GhE~aG~V~~vG~~V~~~~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~G-------  117 (348)
T 4eez_A           49 DFG-NKAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKN---AGYSVDG-------  117 (348)
T ss_dssp             TTC-CCTTCBCCSEEEEEEEEECTTCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------
T ss_pred             CCC-CCCCcccceeEEEEEEEECceeeecccCCeEeecccccccCccccccCCcccccccccc---cccccCC-------
Confidence            344 568999999999999999999999999999987665 4588999999999999988876   6666677       


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                                  +|+||+.++++.++++|+++++++|++++++++|||+++ +.+++++|++|||+|+|++|.+++|+++
T Consensus       118 ------------~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~  184 (348)
T 4eez_A          118 ------------GMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAK  184 (348)
T ss_dssp             ------------SSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHH
T ss_pred             ------------cceeeccccccceeecCCCCCHHHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHH
Confidence                        999999999999999999999999999999999999964 6788999999999999999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          161 LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       161 ~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      ..+..+|++++++++++++++++|+++++|+.+   .++.+.+++.+++ ++|.++++.++...+..++++++++ |+++
T Consensus       185 ~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~---~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~-G~~v  260 (348)
T 4eez_A          185 NVFGAKVIAVDINQDKLNLAKKIGADVTINSGD---VNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPM-GKMV  260 (348)
T ss_dssp             HTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C---CCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEE-EEEE
T ss_pred             HhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC---CCHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCC-ceEE
Confidence            764339999999999999999999999999998   8999999999999 9999999999998899999999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-  318 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-  318 (326)
                      .+|...  ....++...++.+++++.|++.++   +++++++++++++|++++  ++ ++|+++++++|++.+++++.. 
T Consensus       261 ~~g~~~--~~~~~~~~~~~~~~~~i~gs~~~~---~~~~~~~~~l~~~g~i~p--~~-~~~~l~~~~~A~~~l~~g~~~G  332 (348)
T 4eez_A          261 AVAVPN--TEMTLSVPTVVFDGVEVAGSLVGT---RLDLAEAFQFGAEGKVKP--IV-ATRKLEEINDIIDEMKAGKIEG  332 (348)
T ss_dssp             ECCCCS--CEEEECHHHHHHSCCEEEECCSCC---HHHHHHHHHHHHTTSCCC--CE-EEECGGGHHHHHHHHHTTCCSS
T ss_pred             EEeccC--CCCccCHHHHHhCCeEEEEEecCC---HHHHHHHHHHHHcCCCEE--EE-EEEeHHHHHHHHHHHHCCCCcc
Confidence            998653  456778888888999999987554   568999999999998754  34 899999999999999998875 


Q ss_pred             EEEEEeCC
Q 020435          319 RCVIWMGE  326 (326)
Q Consensus       319 k~vv~~~~  326 (326)
                      |+||+|++
T Consensus       333 KvVl~~sk  340 (348)
T 4eez_A          333 RMVIDFTK  340 (348)
T ss_dssp             EEEEECC-
T ss_pred             EEEEEccc
Confidence            99999874

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.4e-46  Score=343.60  Aligned_cols=280  Identities=25%  Similarity=0.383  Sum_probs=229.1

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      +..+|.++|||++|+|+++|++ ++|++||||+..+..+|+.|.+|+.+++++|.....   .|+..+|           
T Consensus        56 ~~~~p~i~G~E~~G~V~~vG~~-~~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-----------  120 (344)
T 2h6e_A           56 GFRLPIILGHENAGTIVEVGEL-AKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQTTNG-----------  120 (344)
T ss_dssp             TCCSSEECCCCEEEEEEEECTT-CCCCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTTBCC-----------
T ss_pred             CCCCCccccccceEEEEEECCC-CCCCCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccccCC-----------
Confidence            3478999999999999999999 999999999888888999999999999999987654   5555556           


Q ss_pred             cccccccccccceEEec-ccceEEcCCCCCccccccccchhhhhhhhhhhh----cccCCCCEEEEEccCHHHHHHHHHH
Q 020435           85 IHHFVSVSSFSEYTVLD-IAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT----ANVEVGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~-~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~----~~~~~~~~vlI~Gag~~G~~a~~la  159 (326)
                              +|+||++++ ++.++++ +++|+++||++++++.|||+++.+.    +++ +|++|||+|+|++|++++|+|
T Consensus       121 --------~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqla  190 (344)
T 2h6e_A          121 --------GFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQIL  190 (344)
T ss_dssp             --------SSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHH
T ss_pred             --------cceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHH
Confidence                    999999999 9999999 9999999999999999999987654    288 999999999999999999999


Q ss_pred             HHc--CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCc
Q 020435          160 RLC--GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWG  236 (326)
Q Consensus       160 ~~~--g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G  236 (326)
                      |+.  |+ +|++++++++++++++++|+++++++.+   .  .+.+.+++++ ++|+||||+|.+..++.++++++++ |
T Consensus       191 k~~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~--~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G  263 (344)
T 2h6e_A          191 KALMKNI-TIVGISRSKKHRDFALELGADYVSEMKD---A--ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-G  263 (344)
T ss_dssp             HHHCTTC-EEEEECSCHHHHHHHHHHTCSEEECHHH---H--HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEE-E
T ss_pred             HHhcCCC-EEEEEeCCHHHHHHHHHhCCCEEecccc---c--hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcC-C
Confidence            999  99 8999999999999999999999997542   1  2334556656 9999999999986699999999998 9


Q ss_pred             EEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCc
Q 020435          237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  316 (326)
Q Consensus       237 ~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~  316 (326)
                      +++.+|...  ....++...++.|++++.+++...   .++++++++++++|++++  .+ ++|+++++++|++.+.+++
T Consensus       264 ~iv~~g~~~--~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~--~i-~~~~l~~~~~A~~~~~~~~  335 (344)
T 2h6e_A          264 AIILVGMEG--KRVSLEAFDTAVWNKKLLGSNYGS---LNDLEDVVRLSESGKIKP--YI-IKVPLDDINKAFTNLDEGR  335 (344)
T ss_dssp             EEEECCCCS--SCCCCCHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSSCC--CE-EEECC--------------
T ss_pred             EEEEeCCCC--CCcccCHHHHhhCCcEEEEEecCC---HHHHHHHHHHHHcCCCCc--ce-EEEeHHHHHHHHHHHHcCC
Confidence            999998753  235677777788899999986432   467999999999997764  47 9999999999999998877


Q ss_pred             e-eEEEEEe
Q 020435          317 C-LRCVIWM  324 (326)
Q Consensus       317 ~-~k~vv~~  324 (326)
                      . +|+||++
T Consensus       336 ~~gKvvl~~  344 (344)
T 2h6e_A          336 VDGRQVITP  344 (344)
T ss_dssp             --CEEEECC
T ss_pred             CceEEEEeC
Confidence            5 4999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-46  Score=341.49  Aligned_cols=287  Identities=23%  Similarity=0.354  Sum_probs=250.3

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|+.+++++|.....   .|+..+|           
T Consensus        58 ~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-----------  123 (347)
T 2hcy_A           58 VKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYTHDG-----------  123 (347)
T ss_dssp             CCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTTBCC-----------
T ss_pred             CCCCcccCccceEEEEEECCCCCCCcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccCCCC-----------
Confidence            4689999999999999999999999999999987654 599999999999999987664   5555556           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCG  163 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g  163 (326)
                              +|+||++++++.++++|+++|+++||+++++++|||+++. ..++++|++|||+|+ |++|++++|+++..|
T Consensus       124 --------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G  194 (347)
T 2hcy_A          124 --------SFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALK-SANLMAGHWVAISGAAGGLGSLAVQYAKAMG  194 (347)
T ss_dssp             --------SSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHHHHHHH-TTTCCTTCEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             --------cceeEEEeccccEEECCCCCCHHHHHHHhhhHHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHCC
Confidence                    9999999999999999999999999999999999999764 458999999999998 999999999999999


Q ss_pred             CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          164 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       164 ~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      + +|+++++++++.+.++++|+++++|..+  .+++.+.+++.+.+++|++||++|....++.++++++++ |+++.+|.
T Consensus       195 a-~V~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~  270 (347)
T 2hcy_A          195 Y-RVLGIDGGEGKEELFRSIGGEVFIDFTK--EKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGM  270 (347)
T ss_dssp             C-EEEEEECSTTHHHHHHHTTCCEEEETTT--CSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEE-EEEEECCC
T ss_pred             C-cEEEEcCCHHHHHHHHHcCCceEEecCc--cHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEeC
Confidence            9 9999999999999999999999998763  267888888877668999999999876689999999998 99999987


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce-eEEEE
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  322 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~-~k~vv  322 (326)
                      .. .....++...++.+++++.+++...   .++++++++++++|++++.   +++|+++++++|++.+.+++. +|+++
T Consensus       271 ~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvv  343 (347)
T 2hcy_A          271 PA-GAKCCSDVFNQVVKSISIVGSYVGN---RADTREALDFFARGLVKSP---IKVVGLSTLPEIYEKMEKGQIVGRYVV  343 (347)
T ss_dssp             CT-TCEEEEEHHHHHHTTCEEEECCCCC---HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEE
T ss_pred             CC-CCCCCCCHHHHhhCCcEEEEccCCC---HHHHHHHHHHHHhCCCccc---eEEEcHHHHHHHHHHHHcCCcceeEEE
Confidence            53 2345677777888999999986433   4679999999999987653   479999999999999998865 49999


Q ss_pred             EeCC
Q 020435          323 WMGE  326 (326)
Q Consensus       323 ~~~~  326 (326)
                      ++++
T Consensus       344 ~~~~  347 (347)
T 2hcy_A          344 DTSK  347 (347)
T ss_dssp             ESCC
T ss_pred             ecCC
Confidence            9864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9.5e-47  Score=351.21  Aligned_cols=297  Identities=22%  Similarity=0.243  Sum_probs=246.2

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCC---CCCCCCCCCccccccCC
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI---SPWMPRDQTSRFKDLRG   82 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~g~~~~~~~~~   82 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.+++++|.......   .+|+..           
T Consensus        59 ~~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~-----------  127 (398)
T 1kol_A           59 AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVD-----------  127 (398)
T ss_dssp             CCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTT-----------
T ss_pred             CCCCcccCcccEEEEEEECCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeecc-----------
Confidence            457999999999999999999999999999999888999999999999999998764210   012110           


Q ss_pred             cccccccccccccceEEeccc--ceEEcCCCCCccc----cccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHH
Q 020435           83 ETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA  156 (326)
Q Consensus        83 ~~~~~~~~~g~~a~~~~v~~~--~~~~ip~~~s~~~----aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~  156 (326)
                          .....|+|+||++++++  .++++|+++++++    +++++++++|||+++ +.+++++|++|||+|+|++|++++
T Consensus       128 ----~~~~~G~~aey~~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~ai  202 (398)
T 1kol_A          128 ----MGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAA  202 (398)
T ss_dssp             ----SCCBCCCSBSEEEESSHHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHH
T ss_pred             ----CCCCCceeeeEEEecchhCeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEECCcHHHHHHH
Confidence                00012499999999986  8999999999988    788888999999987 478999999999999999999999


Q ss_pred             HHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcH--------------
Q 020435          157 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA--------------  221 (326)
Q Consensus       157 ~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~--------------  221 (326)
                      |+||++|+.+|++++++++++++++++|++ ++++.+  .+++.+.+++.+++ ++|+||||+|..              
T Consensus       203 qlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~--~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~  279 (398)
T 1kol_A          203 ASARLLGAAVVIVGDLNPARLAHAKAQGFE-IADLSL--DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAP  279 (398)
T ss_dssp             HHHHHTTCSEEEEEESCHHHHHHHHHTTCE-EEETTS--SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCT
T ss_pred             HHHHHCCCCeEEEEcCCHHHHHHHHHcCCc-EEccCC--cchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccch
Confidence            999999987799999999999999999997 788765  13378889999987 999999999976              


Q ss_pred             -HHHHHHHHHhhcCCcEEEEeccCCC-C----------CcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCC
Q 020435          222 -SLVQEAYACCRKGWGKTIVLGVDQP-G----------SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE  289 (326)
Q Consensus       222 -~~~~~~~~~l~~~~G~~v~~g~~~~-~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~  289 (326)
                       ..+..++++++++ |+++.+|.... .          ....++...++.|++++.++...   ..++++++++++++|+
T Consensus       280 ~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~l~~~g~  355 (398)
T 1kol_A          280 ATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTP---VMKYNRALMQAIMWDR  355 (398)
T ss_dssp             THHHHHHHHHEEEE-EEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSCC---HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhcC-CEEEEeccccCCcccccccccccccccccHHHHhhcccEEEecccC---hHHHHHHHHHHHHcCC
Confidence             2588999999998 99999986421 1          12355666677789998876321   2346788999999998


Q ss_pred             CC-CCcceeeeeccccHHHHHHHHHcCceeEEEEEeC
Q 020435          290 LE-LDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  325 (326)
Q Consensus       290 ~~-~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv~~~  325 (326)
                      ++ .+++++++|+++++++|++.+.+++.+|++|+++
T Consensus       356 l~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~~  392 (398)
T 1kol_A          356 INIAEVVGVQVISLDDAPRGYGEFDAGVPKKFVIDPH  392 (398)
T ss_dssp             CCHHHHHTEEEECGGGHHHHHHHHHHTCSCEEEECTT
T ss_pred             CCCccceeEEEEcHHHHHHHHHHHhCCCceEEEEEeC
Confidence            87 3456789999999999999998877689999875

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=7.2e-46  Score=341.15  Aligned_cols=282  Identities=23%  Similarity=0.261  Sum_probs=245.8

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCC-CCCCCCCCccccccCCc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKIS-PWMPRDQTSRFKDLRGE   83 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~g~~~~~~~~~~   83 (326)
                      +..+|.++|||++|+|+++|++|++|++||||++.+..      +|+.+. +.|........ .|...+|          
T Consensus        80 ~~~~P~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~~~G----------  142 (363)
T 3uog_A           80 DLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGAHPG----------  142 (363)
T ss_dssp             CCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTTSCC----------
T ss_pred             CCCCCcCcccceEEEEEEECCCCCCCCCCCEEEEeccc------cccccc-cccccccccccccCcCCCC----------
Confidence            45789999999999999999999999999999887543      567777 88863221111 4445555          


Q ss_pred             ccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC
Q 020435           84 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG  163 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g  163 (326)
                               +|+||++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|+|++|++++|+|+..|
T Consensus       143 ---------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~G  213 (363)
T 3uog_A          143 ---------VLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATG  213 (363)
T ss_dssp             ---------CCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTT
T ss_pred             ---------cceeEEEechHHeEECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence                     99999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          164 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       164 ~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      + +|++++++++++++++++|++++++.+.   .++.+.+++.+++ ++|+||||+|... +..++++++++ |+++.+|
T Consensus       214 a-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~v~~~~~g~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~G  287 (363)
T 3uog_A          214 A-EVIVTSSSREKLDRAFALGADHGINRLE---EDWVERVYALTGDRGADHILEIAGGAG-LGQSLKAVAPD-GRISVIG  287 (363)
T ss_dssp             C-EEEEEESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHHTTCCEEEEEEETTSSC-HHHHHHHEEEE-EEEEEEC
T ss_pred             C-EEEEEecCchhHHHHHHcCCCEEEcCCc---ccHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhhcC-CEEEEEe
Confidence            9 9999999999999999999999999655   7899999999988 9999999999766 89999999998 9999999


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCceeEEEE
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  322 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~k~vv  322 (326)
                      .... ....++...++.+++++.+++.+.   +++++++++++++|++  +++++++|+++++++|++.+.+++.+|+||
T Consensus       288 ~~~~-~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi  361 (363)
T 3uog_A          288 VLEG-FEVSGPVGPLLLKSPVVQGISVGH---RRALEDLVGAVDRLGL--KPVIDMRYKFTEVPEALAHLDRGPFGKVVI  361 (363)
T ss_dssp             CCSS-CEECCBTTHHHHTCCEEEECCCCC---HHHHHHHHHHHHHHTC--CCCEEEEEEGGGHHHHHHTGGGCCSBEEEE
T ss_pred             cCCC-cccCcCHHHHHhCCcEEEEEecCC---HHHHHHHHHHHHcCCC--ccceeeEEcHHHHHHHHHHHHcCCCccEEE
Confidence            7542 345667777788999999986543   4689999999999965  556889999999999999999888559999


Q ss_pred             Ee
Q 020435          323 WM  324 (326)
Q Consensus       323 ~~  324 (326)
                      ++
T Consensus       362 ~~  363 (363)
T 3uog_A          362 EF  363 (363)
T ss_dssp             EC
T ss_pred             eC
Confidence            75

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=2.9e-46  Score=341.87  Aligned_cols=283  Identities=27%  Similarity=0.367  Sum_probs=250.5

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++|++|++||||+..+..+|+.|.+|+.+++++|.....   .|+..+|            
T Consensus        60 ~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G------------  124 (347)
T 1jvb_A           60 VKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG------------  124 (347)
T ss_dssp             CCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC------------
T ss_pred             CCCCccccccceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---ccccCCC------------
Confidence            4689999999999999999999999999999888888999999999999999987654   5555556            


Q ss_pred             ccccccccccceEEecc-cceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHc-
Q 020435           86 HHFVSVSSFSEYTVLDI-AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC-  162 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~-~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~-  162 (326)
                             +|+||+++++ +.++++ +++|+++||++++++.|||+++ +.++++++++|||+|+ |++|++++|+++.. 
T Consensus       125 -------~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~  195 (347)
T 1jvb_A          125 -------AYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS  195 (347)
T ss_dssp             -------SSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHT
T ss_pred             -------cceeEEEecCccceEEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcC
Confidence                   9999999999 999999 9999999999999999999986 4589999999999998 59999999999999 


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC-CCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~-~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      |+ +|+++++++++.+.++++|+++++++.+   .++.+.+.+.+. +++|++||++|.+..++.++++++++ |+++.+
T Consensus       196 Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~iv~~  270 (347)
T 1jvb_A          196 GA-TIIGVDVREEAVEAAKRAGADYVINASM---QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMV  270 (347)
T ss_dssp             CC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEEC
T ss_pred             CC-eEEEEcCCHHHHHHHHHhCCCEEecCCC---ccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcC-CEEEEE
Confidence            99 8999999999999999999999999877   778888888887 59999999999986689999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EE
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RC  320 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~  320 (326)
                      |.... .. .++...++.+++++.++....   +++++++++++++|+++  +.++++|+++++++|++.+.+++.. |+
T Consensus       271 g~~~~-~~-~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKv  343 (347)
T 1jvb_A          271 GLFGA-DL-HYHAPLITLSEIQFVGSLVGN---QSDFLGIMRLAEAGKVK--PMITKTMKLEEANEAIDNLENFKAIGRQ  343 (347)
T ss_dssp             CSSCC-CC-CCCHHHHHHHTCEEEECCSCC---HHHHHHHHHHHHTTSSC--CCCEEEEEGGGHHHHHHHHHTTCCCSEE
T ss_pred             CCCCC-CC-CCCHHHHHhCceEEEEEeccC---HHHHHHHHHHHHcCCCC--ceEEEEEcHHHHHHHHHHHHCCCCcceE
Confidence            97541 22 666677778899999986433   46799999999999764  5588999999999999999988764 99


Q ss_pred             EEEe
Q 020435          321 VIWM  324 (326)
Q Consensus       321 vv~~  324 (326)
                      ||++
T Consensus       344 vl~~  347 (347)
T 1jvb_A          344 VLIP  347 (347)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-46  Score=346.88  Aligned_cols=288  Identities=21%  Similarity=0.327  Sum_probs=239.8

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCC--C---CCCCCCCCCc
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFK--I---SPWMPRDQTS   75 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~---~~g~~~~g~~   75 (326)
                      .++...+|.++|||++|+|+++|++|++|++||||++.+. ..|+.|.+|+.+++++|......  .   ..|...+|  
T Consensus        70 ~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G--  147 (369)
T 1uuf_A           70 EWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLG--  147 (369)
T ss_dssp             TTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCC--
T ss_pred             CCCCCCCCeecccCceEEEEEECCCCCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCC--
Confidence            3454568999999999999999999999999999998776 46999999999999999865210  0   00222334  


Q ss_pred             cccccCCcccccccccccccceEEecccceEEcCCC-CCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHH
Q 020435           76 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT-VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA  154 (326)
Q Consensus        76 ~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~-~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~  154 (326)
                                       +|+||++++++.++++|++ +|+++||+++++++|||+++.+ +++++|++|||+|+|++|++
T Consensus       148 -----------------~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~  209 (369)
T 1uuf_A          148 -----------------GYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHM  209 (369)
T ss_dssp             -----------------SSBSEEEEEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHH
T ss_pred             -----------------cccceEEEcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHH
Confidence                             9999999999999999999 9999999999999999998655 68999999999999999999


Q ss_pred             HHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcC
Q 020435          155 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG  234 (326)
Q Consensus       155 a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~  234 (326)
                      ++|+|+..|+ +|++++++++++++++++|+++++++.+   .++.+   ++. +++|+||||+|.+..+..++++++++
T Consensus       210 aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~---~~~-~g~Dvvid~~g~~~~~~~~~~~l~~~  281 (369)
T 1uuf_A          210 GIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRN---ADEMA---AHL-KSFDFILNTVAAPHNLDDFTTLLKRD  281 (369)
T ss_dssp             HHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETTC---HHHHH---TTT-TCEEEEEECCSSCCCHHHHHTTEEEE
T ss_pred             HHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEecccc---HHHHH---Hhh-cCCCEEEECCCCHHHHHHHHHHhccC
Confidence            9999999999 8999999999999999999999999876   54433   333 48999999999875588999999998


Q ss_pred             CcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHc
Q 020435          235 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK  314 (326)
Q Consensus       235 ~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~  314 (326)
                       |+++.+|..... ...++...++.+++++.+++.+.   .++++++++++++|++++.  + +.|+++++++|++.+.+
T Consensus       282 -G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~  353 (369)
T 1uuf_A          282 -GTMTLVGAPATP-HKSPEVFNLIMKRRAIAGSMIGG---IPETQEMLDFCAEHGIVAD--I-EMIRADQINEAYERMLR  353 (369)
T ss_dssp             -EEEEECCCC--------CHHHHHTTTCEEEECCSCC---HHHHHHHHHHHHHHTCCCC--E-EEECGGGHHHHHHHHHT
T ss_pred             -CEEEEeccCCCC-ccccCHHHHHhCCcEEEEeecCC---HHHHHHHHHHHHhCCCCcc--e-EEEcHHHHHHHHHHHHc
Confidence             999999875321 12566667778899999986443   3678999999999987653  5 57999999999999998


Q ss_pred             Cce-eEEEEEeC
Q 020435          315 GKC-LRCVIWMG  325 (326)
Q Consensus       315 ~~~-~k~vv~~~  325 (326)
                      ++. +|+++.++
T Consensus       354 ~~~~gKvvi~~~  365 (369)
T 1uuf_A          354 GDVKYRFVIDNR  365 (369)
T ss_dssp             TCSSSEEEEEGG
T ss_pred             CCCceEEEEecC
Confidence            875 49999875

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=2.8e-47  Score=350.16  Aligned_cols=287  Identities=21%  Similarity=0.277  Sum_probs=241.8

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCC-CccCCCEEeecC-CCCCCCCccccCCCCCCCCCC-CCC-C--CCCCCCCCCc
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVD-GVVEGDVVIPHF-LADCTECVGCRSKKGNLCSAF-PFK-I--SPWMPRDQTS   75 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~-~~~vGd~V~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-~--~~g~~~~g~~   75 (326)
                      .+|...+|.++|||++|+|+++|++|+ +|++||||++.+ ..+|+.|.+|+.+++++|... ... .  ..|...+|  
T Consensus        56 ~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G--  133 (360)
T 1piw_A           56 HWGNMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQG--  133 (360)
T ss_dssp             TTSCCCSSEECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCC--
T ss_pred             CCCCCCCCcccCcCceEEEEEeCCCCCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCC--
Confidence            345557899999999999999999999 999999996544 468999999999999999765 110 0  00333344  


Q ss_pred             cccccCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHH
Q 020435           76 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV  155 (326)
Q Consensus        76 ~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a  155 (326)
                                       +|+||++++++.++++|+++|+++||++++++.|||+++.+ +++++|++|||+|+|++|+++
T Consensus       134 -----------------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~  195 (360)
T 1piw_A          134 -----------------GYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMG  195 (360)
T ss_dssp             -----------------SSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHH
T ss_pred             -----------------cceeEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHH
Confidence                             99999999999999999999999999999999999998755 899999999999999999999


Q ss_pred             HHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCc-cHHHHHHHhcCCCccEEEEcCCc--HHHHHHHHHHhh
Q 020435          156 AEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK-SVSQIIIDMTDGGADYCFECVGL--ASLVQEAYACCR  232 (326)
Q Consensus       156 ~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~~~~~i~~~~~~g~d~v~d~~g~--~~~~~~~~~~l~  232 (326)
                      +|+||.+|+ +|++++++++++++++++|+++++++.+   . ++.+.+.    +++|+||||+|.  +..++.++++++
T Consensus       196 ~qlak~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~~~~~---~~~~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~  267 (360)
T 1piw_A          196 TLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATLE---EGDWGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMK  267 (360)
T ss_dssp             HHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGGG---TSCHHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEE
T ss_pred             HHHHHHCCC-EEEEEcCCHHHHHHHHHcCCCEEEcCcC---chHHHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhc
Confidence            999999999 8999999999999999999999999876   4 5555443    489999999998  554889999999


Q ss_pred             cCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeecccc--HHHHHH
Q 020435          233 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE--INSAFD  310 (326)
Q Consensus       233 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~--i~~a~~  310 (326)
                      ++ |+++.+|....  ...++...++.|++++.+++...   .++++++++++++|++++.  + ++|++++  +++|++
T Consensus       268 ~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--i-~~~~l~~~~~~~A~~  338 (360)
T 1piw_A          268 VG-GRIVSISIPEQ--HEMLSLKPYGLKAVSISYSALGS---IKELNQLLKLVSEKDIKIW--V-ETLPVGEAGVHEAFE  338 (360)
T ss_dssp             EE-EEEEECCCCCS--SCCEEECGGGCBSCEEEECCCCC---HHHHHHHHHHHHHTTCCCC--E-EEEESSHHHHHHHHH
T ss_pred             CC-CEEEEecCCCC--ccccCHHHHHhCCeEEEEEecCC---HHHHHHHHHHHHhCCCcce--E-EEEeccHhHHHHHHH
Confidence            98 99999987543  11455556677899999986432   4679999999999977644  6 8999999  999999


Q ss_pred             HHHcCcee-EEEEEeC
Q 020435          311 LLIKGKCL-RCVIWMG  325 (326)
Q Consensus       311 ~~~~~~~~-k~vv~~~  325 (326)
                      .+.+++.. |+|++++
T Consensus       339 ~~~~~~~~gKvvi~~~  354 (360)
T 1piw_A          339 RMEKGDVRYRFTLVGY  354 (360)
T ss_dssp             HHHHTCCSSEEEEECC
T ss_pred             HHHCCCCceEEEEecC
Confidence            99888754 9999875

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=2.8e-47  Score=349.78  Aligned_cols=283  Identities=18%  Similarity=0.194  Sum_probs=243.9

Q ss_pred             CCCCCC---CcccCCceeEEEEEecCCCCCccCCCEEeecCCCC--CCCCccccCCCCCCCCCCCCCCCC--CC-CCCCC
Q 020435            3 DFPAVF---PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLAD--CTECVGCRSKKGNLCSAFPFKISP--WM-PRDQT   74 (326)
Q Consensus         3 ~~~~~~---p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--g~-~~~g~   74 (326)
                      +|...+   |.++|||++| |+++|++ ++|++||||++.+...  |+.|.+|+.+++++|.....   .  |+ ..+| 
T Consensus        49 ~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~~~g~~~~~G-  122 (357)
T 2b5w_A           49 HGGFPEGEDHLVLGHEAVG-VVVDPND-TELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMY---FERGIVGAHG-  122 (357)
T ss_dssp             STTSCTTCSEEECCSEEEE-EEEECTT-SSCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSC---EEETTBEECC-
T ss_pred             CCCCCCCCCCcccCceeEE-EEEECCC-CCCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcc---cccCccCCCc-
Confidence            444456   9999999999 9999999 9999999999988877  99999999999999987654   3  43 3345 


Q ss_pred             ccccccCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCC------CEEEEEcc
Q 020435           75 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVG------STVVIFGL  148 (326)
Q Consensus        75 ~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~------~~vlI~Ga  148 (326)
                                        +|+||++++++.++++|+++| ++ |+++.+++|||+++ +.+++++|      ++|||+|+
T Consensus       123 ------------------~~aey~~v~~~~~~~iP~~~~-~~-aal~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~Ga  181 (357)
T 2b5w_A          123 ------------------YMSEFFTSPEKYLVRIPRSQA-EL-GFLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGN  181 (357)
T ss_dssp             ------------------SCBSEEEEEGGGEEECCGGGS-TT-GGGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECC
T ss_pred             ------------------ceeeEEEEchHHeEECCCCcc-hh-hhhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECC
Confidence                              999999999999999999999 55 55677999999987 77889999      99999999


Q ss_pred             CHHHHHH-HHHH-HHcCCCEEEEEcCChh---HHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHH
Q 020435          149 GSIGLAV-AEGA-RLCGATRIIGVDVISE---KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL  223 (326)
Q Consensus       149 g~~G~~a-~~la-~~~g~~~V~~~~~~~~---~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~  223 (326)
                      |++|+++ +|+| |++|+++|++++++++   +.++++++|++++ ++.+   .++.+ +++. ++++|+||||+|.+..
T Consensus       182 G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~---~~~~~-i~~~-~gg~Dvvid~~g~~~~  255 (357)
T 2b5w_A          182 GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQ---TPVED-VPDV-YEQMDFIYEATGFPKH  255 (357)
T ss_dssp             SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTT---SCGGG-HHHH-SCCEEEEEECSCCHHH
T ss_pred             CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCc---cCHHH-HHHh-CCCCCEEEECCCChHH
Confidence            9999999 9999 9999944999999999   9999999999999 8877   67777 7777 5599999999999866


Q ss_pred             HHHHHHHhhcCCcEEEEeccCCCCCcccccHHHH----HhcCCEEEeeeccCCCCCCCHHHHHHHHhCC--CCCCCccee
Q 020435          224 VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV----LHSGKILMGSLFGGLKAKSDIPILLKRYMDK--ELELDKFVT  297 (326)
Q Consensus       224 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~i~  297 (326)
                      +..++++++++ |+++.+|.... ....++...+    +.+++++.+++...   .++++++++++++|  ++ ++++++
T Consensus       256 ~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~~~~-~~~~i~  329 (357)
T 2b5w_A          256 AIQSVQALAPN-GVGALLGVPSD-WAFEVDAGAFHREMVLHNKALVGSVNSH---VEHFEAATVTFTKLPKWF-LEDLVT  329 (357)
T ss_dssp             HHHHHHHEEEE-EEEEECCCCCC-CCCCCCHHHHHHHHHHTTCEEEECCCCC---HHHHHHHHHHHHHSCHHH-HHHHEE
T ss_pred             HHHHHHHHhcC-CEEEEEeCCCC-CCceecHHHHhHHHHhCCeEEEEeccCC---HHHHHHHHHHHHhCchhh-hhhhcc
Confidence            89999999998 99999997542 3456676666    78899999986443   46799999999999  76 667788


Q ss_pred             eeeccccHHHHHHHHHcCceeEEEEEeCC
Q 020435          298 HEMKFEEINSAFDLLIKGKCLRCVIWMGE  326 (326)
Q Consensus       298 ~~~~l~~i~~a~~~~~~~~~~k~vv~~~~  326 (326)
                      ++|+++++++|++.+  +..+|+++++++
T Consensus       330 ~~~~l~~~~~A~~~~--~~~gKvvi~~~~  356 (357)
T 2b5w_A          330 GVHPLSEFEAAFDDD--DTTIKTAIEFST  356 (357)
T ss_dssp             EEEEGGGGGGGGCCS--TTCCEEEEECCC
T ss_pred             eeecHHHHHHHHHHh--CCCceEEEEecC
Confidence            999999999999988  445699999874

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=2.7e-45  Score=336.59  Aligned_cols=291  Identities=23%  Similarity=0.339  Sum_probs=239.1

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      .++...+|.++|||++|+|+++|++|++|++||||++.+. .+|+.|.+|+.+++++|.....    ++.  +       
T Consensus        57 ~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~----~~~--~-------  123 (357)
T 2cf5_A           57 DLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIW----SYN--D-------  123 (357)
T ss_dssp             TTTCCCSSBCCCCEEEEEEEEECSSCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE----TTT--S-------
T ss_pred             CCCCCCCCeecCcceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccc----ccc--c-------
Confidence            3444578999999999999999999999999999987554 5799999999999999954331    111  0       


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccC-CCCEEEEEccCHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~-~~~~vlI~Gag~~G~~a~~la  159 (326)
                        .+..+....|+|+||++++++.++++|+++|+++||++++++.|||+++ +..+++ +|++|||+|+|++|++++|+|
T Consensus       124 --~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l-~~~~~~~~g~~VlV~GaG~vG~~a~qla  200 (357)
T 2cf5_A          124 --VYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPL-SHFGLKQPGLRGGILGLGGVGHMGVKIA  200 (357)
T ss_dssp             --BCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGTHHHHHHHHH-HHTSTTSTTCEEEEECCSHHHHHHHHHH
T ss_pred             --cccCCCCCCCccccEEEechhhEEECcCCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCCEEEEECCCHHHHHHHHHH
Confidence              0000011224999999999999999999999999999999999999976 456788 999999999999999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHH-hcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      |..|+ +|+++++++++.+.++ ++|+++++++.+   .   +.+++.++ ++|+||||+|.+..++.++++++++ |++
T Consensus       201 k~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~---~---~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~-G~i  271 (357)
T 2cf5_A          201 KAMGH-HVTVISSSNKKREEALQDLGADDYVIGSD---Q---AKMSELAD-SLDYVIDTVPVHHALEPYLSLLKLD-GKL  271 (357)
T ss_dssp             HHHTC-EEEEEESSTTHHHHHHTTSCCSCEEETTC---H---HHHHHSTT-TEEEEEECCCSCCCSHHHHTTEEEE-EEE
T ss_pred             HHCCC-eEEEEeCChHHHHHHHHHcCCceeecccc---H---HHHHHhcC-CCCEEEECCCChHHHHHHHHHhccC-CEE
Confidence            99999 9999999999999887 899999998765   3   34555553 8999999999875488999999998 999


Q ss_pred             EEeccCCCCCccc-ccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCce
Q 020435          239 IVLGVDQPGSQLS-LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC  317 (326)
Q Consensus       239 v~~g~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~  317 (326)
                      +.+|....  ... ++.. ++.|++++.+++...   .++++++++++++|++++.  + ++||++++++|++.+.+++.
T Consensus       272 v~~G~~~~--~~~~~~~~-~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~  342 (357)
T 2cf5_A          272 ILMGVINN--PLQFLTPL-LMLGRKVITGSFIGS---MKETEEMLEFCKEKGLSSI--I-EVVKMDYVNTAFERLEKNDV  342 (357)
T ss_dssp             EECSCCSS--CCCCCHHH-HHHHTCEEEECCSCC---HHHHHHHHHHHHHTTCCCC--E-EEEEGGGHHHHHHHHHTTCS
T ss_pred             EEeCCCCC--CccccCHH-HHhCccEEEEEccCC---HHHHHHHHHHHHcCCCCCc--e-EEEeHHHHHHHHHHHHCCCC
Confidence            99987532  222 4445 777899999986432   4578999999999987654  5 79999999999999998876


Q ss_pred             e-EEEEEeCC
Q 020435          318 L-RCVIWMGE  326 (326)
Q Consensus       318 ~-k~vv~~~~  326 (326)
                      . |+++++++
T Consensus       343 ~gKvvi~~~~  352 (357)
T 2cf5_A          343 RYRFVVDVEG  352 (357)
T ss_dssp             SSEEEEETTS
T ss_pred             ceEEEEeCCc
Confidence            5 99998753

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=9.7e-45  Score=333.88  Aligned_cols=291  Identities=22%  Similarity=0.353  Sum_probs=240.8

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      .++...+|.++|||++|+|+++|++|++|++||||++.+. ..|+.|.+|+.+++++|...... ..+....|       
T Consensus        64 ~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~~~g-------  135 (366)
T 1yqd_A           64 DWGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILT-YASIYHDG-------  135 (366)
T ss_dssp             SSSCCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEES-SSSBCTTS-------
T ss_pred             CCCCCCCCEecccceEEEEEEECCCCCcCCCCCEEEEcCCcCCCCCChhhhCcCcccCCccccc-ccccccCC-------
Confidence            3444578999999999999999999999999999987654 57999999999999999544311 00100000       


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccC-CCCEEEEEccCHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGA  159 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~-~~~~vlI~Gag~~G~~a~~la  159 (326)
                             ....|+|+||++++++.++++|+++|+++||++++++.|||+++. ..+++ +|++|||+|+|++|++++|+|
T Consensus       136 -------~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a  207 (366)
T 1yqd_A          136 -------TITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFA  207 (366)
T ss_dssp             -------CBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             -------CcCCCccccEEEEchhhEEECCCCCCHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHH
Confidence                   011249999999999999999999999999999999999999764 46787 999999999999999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHH-hcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      +..|+ +|+++++++++.+.++ ++|+++++++.+   .   +.+++.++ ++|+||||+|....++.++++++++ |++
T Consensus       208 ~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~---~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~i  278 (366)
T 1yqd_A          208 KAFGS-KVTVISTSPSKKEEALKNFGADSFLVSRD---Q---EQMQAAAG-TLDGIIDTVSAVHPLLPLFGLLKSH-GKL  278 (366)
T ss_dssp             HHTTC-EEEEEESCGGGHHHHHHTSCCSEEEETTC---H---HHHHHTTT-CEEEEEECCSSCCCSHHHHHHEEEE-EEE
T ss_pred             HHCCC-EEEEEeCCHHHHHHHHHhcCCceEEeccC---H---HHHHHhhC-CCCEEEECCCcHHHHHHHHHHHhcC-CEE
Confidence            99999 9999999999998877 899999998776   3   34555553 8999999999875478999999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      +.+|...  ....++...++.+++++.+++.+.   .++++++++++++|++++.  + ++|+++++++|++.+.+++..
T Consensus       279 v~~g~~~--~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~  350 (366)
T 1yqd_A          279 ILVGAPE--KPLELPAFSLIAGRKIVAGSGIGG---MKETQEMIDFAAKHNITAD--I-EVISTDYLNTAMERLAKNDVR  350 (366)
T ss_dssp             EECCCCS--SCEEECHHHHHTTTCEEEECCSCC---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCS
T ss_pred             EEEccCC--CCCCcCHHHHHhCCcEEEEecCCC---HHHHHHHHHHHHcCCCCCc--e-EEEcHHHHHHHHHHHHcCCcc
Confidence            9998753  234577777888899999986433   3578999999999987664  5 799999999999999988764


Q ss_pred             -EEEEEeC
Q 020435          319 -RCVIWMG  325 (326)
Q Consensus       319 -k~vv~~~  325 (326)
                       |+++.++
T Consensus       351 gKvvl~~~  358 (366)
T 1yqd_A          351 YRFVIDVG  358 (366)
T ss_dssp             SEEEECHH
T ss_pred             eEEEEEcc
Confidence             9999763

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=1.4e-44  Score=341.95  Aligned_cols=287  Identities=19%  Similarity=0.192  Sum_probs=248.8

Q ss_pred             CCC-cccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC-CCccccccCCcc
Q 020435            7 VFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QTSRFKDLRGET   84 (326)
Q Consensus         7 ~~p-~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-g~~~~~~~~~~~   84 (326)
                      .+| .|+|||++|+|+++|++|++|++||||++.+. .|..|..|..++.+.|.....   +|+... |           
T Consensus       115 ~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~---~G~~~~~G-----------  179 (456)
T 3krt_A          115 DLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRI---WGFETNFG-----------  179 (456)
T ss_dssp             CCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEE---TTTTSSSC-----------
T ss_pred             CCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccc---cccCCCCC-----------
Confidence            567 69999999999999999999999999988644 588888898899999988775   666543 5           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhh--cccCCCCEEEEEcc-CHHHHHHHHHHHH
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIGLAVAEGARL  161 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~--~~~~~~~~vlI~Ga-g~~G~~a~~la~~  161 (326)
                              +|+||+++++++++++|+++++++||+++++++|||+++...  +++++|++|||+|+ |++|++++|+|+.
T Consensus       180 --------~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~  251 (456)
T 3krt_A          180 --------GLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALA  251 (456)
T ss_dssp             --------SSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHH
T ss_pred             --------cccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence                    999999999999999999999999999999999999987654  78999999999998 9999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCC--------------ccHHHHHHHhcCC-CccEEEEcCCcHHHHHH
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD--------------KSVSQIIIDMTDG-GADYCFECVGLASLVQE  226 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~--------------~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~  226 (326)
                      .|+ +|+++++++++.++++++|+++++++.+...              ..+.+.+++++++ ++|+||||+|+.. +..
T Consensus       252 ~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~~-~~~  329 (456)
T 3krt_A          252 GGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRET-FGA  329 (456)
T ss_dssp             TTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHHH-HHH
T ss_pred             cCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCchh-HHH
Confidence            999 9999999999999999999999999876111              1235788899988 9999999999955 999


Q ss_pred             HHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHH
Q 020435          227 AYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN  306 (326)
Q Consensus       227 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~  306 (326)
                      ++++++++ |+++.+|... .....++...++.+++++.+++.+.   .+++.++++++++|+++  +.++++|++++++
T Consensus       330 ~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~  402 (456)
T 3krt_A          330 SVFVTRKG-GTITTCASTS-GYMHEYDNRYLWMSLKRIIGSHFAN---YREAWEANRLIAKGRIH--PTLSKVYSLEDTG  402 (456)
T ss_dssp             HHHHEEEE-EEEEESCCTT-CSEEEEEHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSSC--CCEEEEEEGGGHH
T ss_pred             HHHHhhCC-cEEEEEecCC-CcccccCHHHHHhcCeEEEEeccCC---HHHHHHHHHHHHcCCcc--cceeEEEcHHHHH
Confidence            99999998 9999999753 3455677777888899999987544   35677899999999775  5688999999999


Q ss_pred             HHHHHHHcCcee-EEEEEeC
Q 020435          307 SAFDLLIKGKCL-RCVIWMG  325 (326)
Q Consensus       307 ~a~~~~~~~~~~-k~vv~~~  325 (326)
                      +|++.+.+++.. |++|.+.
T Consensus       403 eA~~~l~~~~~~GKvvv~~~  422 (456)
T 3krt_A          403 QAAYDVHRNLHQGKVGVLCL  422 (456)
T ss_dssp             HHHHHHHTTCSSSEEEEESS
T ss_pred             HHHHHHHhCCCCCcEEEEeC
Confidence            999999988775 9988763

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=4.1e-44  Score=338.28  Aligned_cols=285  Identities=16%  Similarity=0.191  Sum_probs=245.8

Q ss_pred             CCC-cccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            7 VFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         7 ~~p-~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      .+| .++|||++|+|+++|++|++|++||||++.+..+|+.|..| .++++.|.....   +|+..+.            
T Consensus       107 ~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~-~~~~~~c~~~~~---~G~~~~~------------  170 (447)
T 4a0s_A          107 DQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPAT-HGDGMLGTEQRA---WGFETNF------------  170 (447)
T ss_dssp             CCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGG-GTCTTCSTTCEE---TTTTSSS------------
T ss_pred             CCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccccc-cccccccccccc---ccccCCC------------
Confidence            467 79999999999999999999999999999988888877644 577899987775   6665531            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhh--hcccCCCCEEEEEcc-CHHHHHHHHHHHHc
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLAVAEGARLC  162 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~--~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~  162 (326)
                            |+|+||+++++++++++|+++++++||+++++++|||+++.+  .+++++|++|||+|+ |++|++++|+|++.
T Consensus       171 ------G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~  244 (447)
T 4a0s_A          171 ------GGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNG  244 (447)
T ss_dssp             ------CSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHT
T ss_pred             ------CceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence                  399999999999999999999999999999999999998764  489999999999997 99999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCcc------------------HHHHHHHhcCCCccEEEEcCCcHHHH
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS------------------VSQIIIDMTDGGADYCFECVGLASLV  224 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~------------------~~~~i~~~~~~g~d~v~d~~g~~~~~  224 (326)
                      |+ +|+++++++++.++++++|+++++++.+   .+                  +.+.+++.+++++|++|||+|... +
T Consensus       245 Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~~-~  319 (447)
T 4a0s_A          245 GG-IPVAVVSSAQKEAAVRALGCDLVINRAE---LGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVT-F  319 (447)
T ss_dssp             TC-EEEEEESSHHHHHHHHHTTCCCEEEHHH---HTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHHH-H
T ss_pred             CC-EEEEEeCCHHHHHHHHhcCCCEEEeccc---ccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCchH-H
Confidence            99 9999999999999999999999998654   22                  367788888449999999999976 8


Q ss_pred             HHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeecccc
Q 020435          225 QEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE  304 (326)
Q Consensus       225 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~  304 (326)
                      +.++.+++++ |+++.+|... .....++...++.+++++.+++...   .++++++++++++|+++  ++++++|++++
T Consensus       320 ~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~~~l~~  392 (447)
T 4a0s_A          320 GLSVIVARRG-GTVVTCGSSS-GYLHTFDNRYLWMKLKKIVGSHGAN---HEEQQATNRLFESGAVV--PAMSAVYPLAE  392 (447)
T ss_dssp             HHHHHHSCTT-CEEEESCCTT-CSEEEEEHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSSC--CCEEEEEEGGG
T ss_pred             HHHHHHHhcC-CEEEEEecCC-CcccccCHHHHHhCCCEEEecCCCC---HHHHHHHHHHHHcCCcc--cceeEEEcHHH
Confidence            9999999998 9999999753 3445677777888899999986443   35688999999999765  56889999999


Q ss_pred             HHHHHHHHHcCcee-EEEEEeC
Q 020435          305 INSAFDLLIKGKCL-RCVIWMG  325 (326)
Q Consensus       305 i~~a~~~~~~~~~~-k~vv~~~  325 (326)
                      +++|++.+.+++.. |++|.+.
T Consensus       393 ~~~A~~~~~~~~~~GKvvv~~~  414 (447)
T 4a0s_A          393 AAEACRVVQTSRQVGKVAVLCM  414 (447)
T ss_dssp             HHHHHHHHHTTCCSSEEEEESS
T ss_pred             HHHHHHHHhcCCCceEEEEEeC
Confidence            99999999988775 9988864

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=1.2e-44  Score=333.30  Aligned_cols=282  Identities=17%  Similarity=0.223  Sum_probs=236.1

Q ss_pred             CCCCC---CcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCC--CCC-CCCCccc
Q 020435            4 FPAVF---PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP--WMP-RDQTSRF   77 (326)
Q Consensus         4 ~~~~~---p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~-~~g~~~~   77 (326)
                      |...+   |.++|||++|+|++  ++ ++|++||||++.+...|+.|.+|+.+++++|.....   .  |+. .+|    
T Consensus        53 ~~~~~~~~p~v~G~E~~G~V~~--~~-~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~~~g~~~~~G----  122 (366)
T 2cdc_A           53 STLPKGKDFLVLGHEAIGVVEE--SY-HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEF---GEAGIHKMDG----  122 (366)
T ss_dssp             -----CCSCEECCSEEEEEECS--CC-SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCC---EEETTBEECC----
T ss_pred             CCCCcCCCCCcCCcceEEEEEe--CC-CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCc---ccCCccCCCC----
Confidence            33456   99999999999999  66 899999999999999999999999999999987653   3  333 344    


Q ss_pred             cccCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhh--h--hcccC--C-------CCEEE
Q 020435           78 KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW--R--TANVE--V-------GSTVV  144 (326)
Q Consensus        78 ~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~--~--~~~~~--~-------~~~vl  144 (326)
                                     +|+||++++++.++++|+++| ++|+ ++.+++|||+++.  +  .++++  +       |++||
T Consensus       123 ---------------~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~Vl  185 (366)
T 2cdc_A          123 ---------------FMREWWYDDPKYLVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVL  185 (366)
T ss_dssp             ---------------SCBSEEEECGGGEEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEE
T ss_pred             ---------------ceeEEEEechHHeEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEE
Confidence                           999999999999999999999 8765 6679999999876  4  78888  8       99999


Q ss_pred             EEccCHHHHHHHHHHHHcCCCEEEEEcCCh---hHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH
Q 020435          145 IFGLGSIGLAVAEGARLCGATRIIGVDVIS---EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       145 I~Gag~~G~~a~~la~~~g~~~V~~~~~~~---~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      |+|+|++|++++|+|+..|+ +|+++++++   ++.++++++|++++ + .+    ++.+.+++ +++++|++|||+|.+
T Consensus       186 V~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-~~----~~~~~~~~-~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          186 VVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY-N-SS----NGYDKLKD-SVGKFDVIIDATGAD  257 (366)
T ss_dssp             EESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE-E-CT----TCSHHHHH-HHCCEEEEEECCCCC
T ss_pred             EECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee-c-hH----HHHHHHHH-hCCCCCEEEECCCCh
Confidence            99999999999999999999 999999998   89999999999988 6 32    55566666 446899999999997


Q ss_pred             HHH-HHHHHHhhcCCcEEEEeccCCCCCcccccHHH---HHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCC----CC
Q 020435          222 SLV-QEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE---VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE----LD  293 (326)
Q Consensus       222 ~~~-~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~----~~  293 (326)
                      ..+ +.++++++++ |+++.+|.... ....++...   ++.+++++.++....   .++++++++++++|+++    ++
T Consensus       258 ~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~~~~~~  332 (366)
T 2cdc_A          258 VNILGNVIPLLGRN-GVLGLFGFSTS-GSVPLDYKTLQEIVHTNKTIIGLVNGQ---KPHFQQAVVHLASWKTLYPKAAK  332 (366)
T ss_dssp             THHHHHHGGGEEEE-EEEEECSCCCS-CEEEEEHHHHHHHHHTTCEEEECCCCC---HHHHHHHHHHHHHHHHHSHHHHT
T ss_pred             HHHHHHHHHHHhcC-CEEEEEecCCC-CccccChhhhHHHHhcCcEEEEecCCC---HHHHHHHHHHHHcCCCCcccchh
Confidence            657 8999999998 99999987542 235666666   788899999985432   46799999999999876    77


Q ss_pred             cceeeeeccccHHHHHHH--HHcCceeEEEEEeC
Q 020435          294 KFVTHEMKFEEINSAFDL--LIKGKCLRCVIWMG  325 (326)
Q Consensus       294 ~~i~~~~~l~~i~~a~~~--~~~~~~~k~vv~~~  325 (326)
                      ++++++|+++++++|++.  ++.+..+|+||+++
T Consensus       333 ~~i~~~~~l~~~~~A~~~l~~~~~~~gKvvi~~~  366 (366)
T 2cdc_A          333 MLITKTVSINDEKELLKVLREKEHGEIKIRILWE  366 (366)
T ss_dssp             TSEEEEEETTCHHHHHHHHHCCCTTCCEEEEECC
T ss_pred             hcEEEEEcHHHHHHHHHHHhhhcCCceEEEEecC
Confidence            788899999999999999  56444459999875

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=1.3e-42  Score=318.37  Aligned_cols=266  Identities=20%  Similarity=0.256  Sum_probs=230.8

Q ss_pred             CCC-CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            2 KDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         2 ~~~-~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      .++ +..+|.++|||++|+|+++|++|++|++||||+..                              ..+|       
T Consensus        78 ~~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~------------------------------~~~G-------  120 (353)
T 4dup_A           78 SYPPPKDASPILGLELSGEIVGVGPGVSGYAVGDKVCGL------------------------------ANGG-------  120 (353)
T ss_dssp             SSCCCTTSCSSSCCEEEEEEEEECTTCCSCCTTCEEEEE------------------------------CSSC-------
T ss_pred             CCCCCCCCCCccccccEEEEEEECCCCCCCCCCCEEEEe------------------------------cCCC-------
Confidence            344 34679999999999999999999999999999643                              2233       


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEc-cCHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGA  159 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~G-ag~~G~~a~~la  159 (326)
                                  +|+||+.++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+| +|++|++++|+|
T Consensus       121 ------------~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a  188 (353)
T 4dup_A          121 ------------AYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLA  188 (353)
T ss_dssp             ------------CSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHH
T ss_pred             ------------ceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence                        9999999999999999999999999999999999999988899999999999996 499999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      +..|+ +|+++++++++.++++++|+++++++.+   .++.+.+++.+++++|++|||+|.+. +..++++++++ |+++
T Consensus       189 ~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~---~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~iv  262 (353)
T 4dup_A          189 RAFGA-EVYATAGSTGKCEACERLGAKRGINYRS---EDFAAVIKAETGQGVDIILDMIGAAY-FERNIASLAKD-GCLS  262 (353)
T ss_dssp             HHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHHSSCEEEEEESCCGGG-HHHHHHTEEEE-EEEE
T ss_pred             HHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeCCc---hHHHHHHHHHhCCCceEEEECCCHHH-HHHHHHHhccC-CEEE
Confidence            99999 9999999999999999999999999988   88999999988449999999999987 89999999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCC-------CHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHH
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS-------DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL  312 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~  312 (326)
                      .+|.........++...++.+++++.+++.......+       .++++++++++|+++  ++++++|+++++++|++.+
T Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~l  340 (353)
T 4dup_A          263 IIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVA--PVIHKVFAFEDVADAHRLL  340 (353)
T ss_dssp             ECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSC--CCEEEEEEGGGHHHHHHHH
T ss_pred             EEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCcc--CCcceEEeHHHHHHHHHHH
Confidence            9997543322226777788899999999765432110       167889999999764  5688999999999999999


Q ss_pred             HcCcee-EEEEEe
Q 020435          313 IKGKCL-RCVIWM  324 (326)
Q Consensus       313 ~~~~~~-k~vv~~  324 (326)
                      .+++.. |++|++
T Consensus       341 ~~~~~~gKvvl~~  353 (353)
T 4dup_A          341 EEGSHVGKVMLTV  353 (353)
T ss_dssp             HHTCCSSEEEEEC
T ss_pred             HhCCCCceEEEeC
Confidence            998865 999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=8.3e-42  Score=314.90  Aligned_cols=273  Identities=19%  Similarity=0.211  Sum_probs=226.8

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|++|++|++||||.       +.|..|..+               ...+|             
T Consensus        61 ~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~-------~~~~~~~~~---------------~~~~G-------------  105 (371)
T 3gqv_A           61 TPWAFLGTDYAGTVVAVGSDVTHIQVGDRVY-------GAQNEMCPR---------------TPDQG-------------  105 (371)
T ss_dssp             CTTSCCCSEEEEEEEEECTTCCSCCTTCEEE-------EECCTTCTT---------------CTTCC-------------
T ss_pred             CCCccCccccEEEEEEeCCCCCCCCCCCEEE-------EeccCCCCC---------------CCCCC-------------
Confidence            4699999999999999999999999999994       445555432               22334             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhh-ccc-----------CCCCEEEEEcc-CHHHH
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT-ANV-----------EVGSTVVIFGL-GSIGL  153 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~-~~~-----------~~~~~vlI~Ga-g~~G~  153 (326)
                            +|+||++++++.++++|+++++++||++++.++|||+++.+. .++           ++|++|||+|+ |++|+
T Consensus       106 ------~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~  179 (371)
T 3gqv_A          106 ------AFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATAT  179 (371)
T ss_dssp             ------SSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHH
T ss_pred             ------cCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHH
Confidence                  999999999999999999999999999999999999988777 553           89999999998 99999


Q ss_pred             HHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHh-h
Q 020435          154 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC-R  232 (326)
Q Consensus       154 ~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l-~  232 (326)
                      +++|+|+..|+ +|+++. +++++++++++|+++++|+.+   .++.+.+++++++++|+||||+|++..+..+++++ +
T Consensus       180 ~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~vi~~~~---~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~  254 (371)
T 3gqv_A          180 VTMQMLRLSGY-IPIATC-SPHNFDLAKSRGAEEVFDYRA---PNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGR  254 (371)
T ss_dssp             HHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS---TTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCT
T ss_pred             HHHHHHHHCCC-EEEEEe-CHHHHHHHHHcCCcEEEECCC---chHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhc
Confidence            99999999999 899997 889999999999999999988   88999999999889999999999987799999999 5


Q ss_pred             cCCcEEEEeccCCC----CCccccc---HHHHHhcCCEEEeeeccCCCC------CCCHHHHHHHHhCCCCCCCcceeee
Q 020435          233 KGWGKTIVLGVDQP----GSQLSLS---SFEVLHSGKILMGSLFGGLKA------KSDIPILLKRYMDKELELDKFVTHE  299 (326)
Q Consensus       233 ~~~G~~v~~g~~~~----~~~~~~~---~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~~~g~~~~~~~i~~~  299 (326)
                      ++ |+++.+|....    .......   ...++.|++++.+++......      .+.++++++++++|++++...+++.
T Consensus       255 ~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~  333 (371)
T 3gqv_A          255 AG-GHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQ  333 (371)
T ss_dssp             TC-EEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEE
T ss_pred             CC-CEEEEEecCccccccccccceeeeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecC
Confidence            88 99999986432    1112211   234566788887774332110      0123478899999999998888888


Q ss_pred             eccccHHHHHHHHHcCce-e-EEEEEeCC
Q 020435          300 MKFEEINSAFDLLIKGKC-L-RCVIWMGE  326 (326)
Q Consensus       300 ~~l~~i~~a~~~~~~~~~-~-k~vv~~~~  326 (326)
                      |+++++++|++.+.+++. + |+++++++
T Consensus       334 ~~l~~~~~A~~~l~~g~~~Gkkvvv~~~~  362 (371)
T 3gqv_A          334 GGFDHIKQGMELVRKGELSGEKLVVRLEG  362 (371)
T ss_dssp             ECHHHHHHHHHHHHTTCCSSCEEEEEECC
T ss_pred             CcHHHHHHHHHHHHcCCCceEEEEEEeCC
Confidence            999999999999998865 3 88888764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.7e-41  Score=308.67  Aligned_cols=265  Identities=21%  Similarity=0.299  Sum_probs=231.4

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      .+| ..+|+++|||++|+|+++|++|++|++||||++..                               +         
T Consensus        58 ~~~-~~~P~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~-------------------------------~---------   96 (334)
T 3qwb_A           58 IYP-CEKPYVLGREASGTVVAKGKGVTNFEVGDQVAYIS-------------------------------N---------   96 (334)
T ss_dssp             SSC-CCSSEECCSEEEEEEEEECTTCCSCCTTCEEEEEC-------------------------------S---------
T ss_pred             CCC-CCCCCccccceEEEEEEECCCCCCCCCCCEEEEee-------------------------------C---------
Confidence            344 45899999999999999999999999999997531                               2         


Q ss_pred             CcccccccccccccceEEec-ccceEEcCCCCCccc---cccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLD-IAHVVKVDPTVPPNR---ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVA  156 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~-~~~~~~ip~~~s~~~---aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~  156 (326)
                                |+|+||++++ ++.++++|+++++++   |+++++.+.|||+++.+.+++++|++|||+|+ |++|++++
T Consensus        97 ----------G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~  166 (334)
T 3qwb_A           97 ----------STFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILN  166 (334)
T ss_dssp             ----------SCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHH
T ss_pred             ----------CcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHH
Confidence                      3999999999 999999999999999   88888899999998888889999999999995 99999999


Q ss_pred             HHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCC
Q 020435          157 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW  235 (326)
Q Consensus       157 ~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~  235 (326)
                      |+++..|+ +|++++++++++++++++|+++++++.+   .++.+.+++.+++ ++|++|||+|... +..++++++++ 
T Consensus       167 ~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~---~~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-  240 (334)
T 3qwb_A          167 QLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASK---EDILRQVLKFTNGKGVDASFDSVGKDT-FEISLAALKRK-  240 (334)
T ss_dssp             HHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEECCGGGG-HHHHHHHEEEE-
T ss_pred             HHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEeCCC---chHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhccC-
Confidence            99999999 9999999999999999999999999988   8899999999988 9999999999966 99999999998 


Q ss_pred             cEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCC-CC----CHHHHHHHHhCCCCCCCcceeeeeccccHHHHHH
Q 020435          236 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-KS----DIPILLKRYMDKELELDKFVTHEMKFEEINSAFD  310 (326)
Q Consensus       236 G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~----~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~  310 (326)
                      |+++.+|... .....++...++.|++++.+++.+.+.. ++    .++++++++++|++++.  ++++|+++++++|++
T Consensus       241 G~iv~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~  317 (334)
T 3qwb_A          241 GVFVSFGNAS-GLIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIK--IYKTYPLRDYRTAAA  317 (334)
T ss_dssp             EEEEECCCTT-CCCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCC--EEEEEEGGGHHHHHH
T ss_pred             CEEEEEcCCC-CCCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCc--eeeEEcHHHHHHHHH
Confidence            9999999753 2334566667778899999876554321 22    24688999999988765  889999999999999


Q ss_pred             HHHcCcee-EEEEEeCC
Q 020435          311 LLIKGKCL-RCVIWMGE  326 (326)
Q Consensus       311 ~~~~~~~~-k~vv~~~~  326 (326)
                      .+.+++.. |++|++++
T Consensus       318 ~~~~~~~~gKvvi~~~q  334 (334)
T 3qwb_A          318 DIESRKTVGKLVLEIPQ  334 (334)
T ss_dssp             HHHTTCCCBEEEEECCC
T ss_pred             HHHhCCCceEEEEecCC
Confidence            99998775 99999864

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=9.2e-42  Score=309.27  Aligned_cols=267  Identities=20%  Similarity=0.231  Sum_probs=229.8

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      |.+|...+|.++|||++|+|+++|++|++|++||||+...                             ..+        
T Consensus        50 g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~-----------------------------~~~--------   92 (325)
T 3jyn_A           50 GLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGT-----------------------------GPL--------   92 (325)
T ss_dssp             TSSCCSSSSBCCCCCEEEEEEEECTTCCSCCTTCEEEESS-----------------------------SSS--------
T ss_pred             CCCCCCCCCCCCCceeEEEEEEECCCCCCCCCCCEEEEec-----------------------------CCC--------
Confidence            4566667899999999999999999999999999997531                             122        


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGA  159 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la  159 (326)
                                 |+|+||+.++++.++++|+++++++||++++..+|||+++.+.+++++|++|||+|+ |++|++++|+|
T Consensus        93 -----------G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a  161 (325)
T 3jyn_A           93 -----------GAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWA  161 (325)
T ss_dssp             -----------CCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHH
T ss_pred             -----------ccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence                       399999999999999999999999999999999999999888899999999999995 99999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      +..|+ +|+++++++++.+.++++|+++++++.+   .++.+.+++.+++ ++|++|||+|... +..++++++++ |++
T Consensus       162 ~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~i  235 (325)
T 3jyn_A          162 KALGA-KLIGTVSSPEKAAHAKALGAWETIDYSH---EDVAKRVLELTDGKKCPVVYDGVGQDT-WLTSLDSVAPR-GLV  235 (325)
T ss_dssp             HHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTCCEEEEEESSCGGG-HHHHHTTEEEE-EEE
T ss_pred             HHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhcCC-CEE
Confidence            99999 9999999999999999999999999988   8899999999988 9999999999966 89999999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHhc-CCEEEeeeccCCC-CCCCH----HHHHHHHhCCCCCCCcceeeeeccccHHHHHHHH
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHS-GKILMGSLFGGLK-AKSDI----PILLKRYMDKELELDKFVTHEMKFEEINSAFDLL  312 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~~~~~----~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~  312 (326)
                      +.+|.... ....++...++.+ .+.+.+...+.+. .++++    +++++++++|++++.  ++++|+++++++|++.+
T Consensus       236 v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~  312 (325)
T 3jyn_A          236 VSFGNASG-PVSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVD--GIEQYALKDAAKAQIEL  312 (325)
T ss_dssp             EECCCTTC-CCCSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCC--CCEEEEGGGHHHHHHHH
T ss_pred             EEEecCCC-CCCCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCc--cccEEcHHHHHHHHHHH
Confidence            99997543 2335666666666 5677655433221 23344    478999999988776  67999999999999999


Q ss_pred             HcCcee-EEEEEe
Q 020435          313 IKGKCL-RCVIWM  324 (326)
Q Consensus       313 ~~~~~~-k~vv~~  324 (326)
                      .+++.. |+||.+
T Consensus       313 ~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          313 SARRTTGSTILIP  325 (325)
T ss_dssp             HTTCCCSCEEEEC
T ss_pred             HcCCCCceEEEeC
Confidence            998876 999874

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=2.1e-41  Score=310.39  Aligned_cols=265  Identities=18%  Similarity=0.256  Sum_probs=225.3

Q ss_pred             CCCCcccCCceeEEEEEecCCC-CCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v-~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      +.+|.++|||++|+|+++|++| ++|++||||+..                              ..+|           
T Consensus        77 ~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~------------------------------~~~G-----------  115 (354)
T 2j8z_A           77 PGASNILGLEASGHVAELGPGCQGHWKIGDTAMAL------------------------------LPGG-----------  115 (354)
T ss_dssp             TTSCSSSCSEEEEEEEEECSCC--CCCTTCEEEEE------------------------------CSSC-----------
T ss_pred             CCCCcccceeeEEEEEEECCCcCCCCCCCCEEEEe------------------------------cCCC-----------
Confidence            3579999999999999999999 999999999653                              1223           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCG  163 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g  163 (326)
                              +|+||+.++++.++++|+++|+++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|
T Consensus       116 --------~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G  187 (354)
T 2j8z_A          116 --------GQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAG  187 (354)
T ss_dssp             --------CSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTT
T ss_pred             --------cceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcC
Confidence                    99999999999999999999999999999999999999888899999999999985 999999999999999


Q ss_pred             CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          164 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       164 ~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      + +|+++++++++.+.++++|++.+++..+   .++.+.+.+.+++ ++|++|||+|.+. +..++++++++ |+++.+|
T Consensus       188 a-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~G~~~-~~~~~~~l~~~-G~iv~~G  261 (354)
T 2j8z_A          188 A-IPLVTAGSQKKLQMAEKLGAAAGFNYKK---EDFSEATLKFTKGAGVNLILDCIGGSY-WEKNVNCLALD-GRWVLYG  261 (354)
T ss_dssp             C-EEEEEESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESSCGGG-HHHHHHHEEEE-EEEEECC
T ss_pred             C-EEEEEeCCHHHHHHHHHcCCcEEEecCC---hHHHHHHHHHhcCCCceEEEECCCchH-HHHHHHhccCC-CEEEEEe
Confidence            9 9999999999999999999999999887   7888899988877 9999999999986 88999999998 9999999


Q ss_pred             cCCCCCcccccH-HHHHhcCCEEEeeeccCCCCC------CC-HHHHHHHHhCC-CCCCCcceeeeeccccHHHHHHHHH
Q 020435          243 VDQPGSQLSLSS-FEVLHSGKILMGSLFGGLKAK------SD-IPILLKRYMDK-ELELDKFVTHEMKFEEINSAFDLLI  313 (326)
Q Consensus       243 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~------~~-~~~~~~l~~~g-~~~~~~~i~~~~~l~~i~~a~~~~~  313 (326)
                      ...+ ....++. ..++.+++++.++........      ++ ++++++++++| +++++++++++|+++++++|++.+.
T Consensus       262 ~~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~  340 (354)
T 2j8z_A          262 LMGG-GDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYME  340 (354)
T ss_dssp             CTTC-SCCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHH
T ss_pred             ccCC-CccCCChhHHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHH
Confidence            7532 2345666 677788999999865432110      01 23578899999 4455667889999999999999998


Q ss_pred             cCcee-EEEEEeCC
Q 020435          314 KGKCL-RCVIWMGE  326 (326)
Q Consensus       314 ~~~~~-k~vv~~~~  326 (326)
                      +++.. |+++++++
T Consensus       341 ~~~~~gKvvv~~~~  354 (354)
T 2j8z_A          341 ANKNIGKIVLELPQ  354 (354)
T ss_dssp             TTCCSSEEEEECCC
T ss_pred             hCCCCceEEEecCC
Confidence            87654 99998763

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=6.4e-41  Score=306.27  Aligned_cols=263  Identities=20%  Similarity=0.228  Sum_probs=223.0

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++|++|++||||+...                           ....+|            
T Consensus        57 ~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~---------------------------~~~~~G------------   97 (346)
T 3fbg_A           57 SKAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSG---------------------------SPDQNG------------   97 (346)
T ss_dssp             SSSCBCCCCCEEEEEEEECTTCCSCCTTCEEEECC---------------------------CTTSCC------------
T ss_pred             CCCCcCcCCccEEEEEEeCCCCCcCCCCCEEEEcC---------------------------CCCCCc------------
Confidence            46899999999999999999999999999997531                           112234            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccC------CCCEEEEEc-cCHHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE------VGSTVVIFG-LGSIGLAVAEG  158 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~------~~~~vlI~G-ag~~G~~a~~l  158 (326)
                             +|+||++++++.++++|+++|+++||++++++.|||+++.+.++++      +|++|||+| +|++|++++|+
T Consensus        98 -------~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~ql  170 (346)
T 3fbg_A           98 -------SNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQI  170 (346)
T ss_dssp             -------SSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHH
T ss_pred             -------ceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHH
Confidence                   9999999999999999999999999999999999999988889988      999999995 59999999999


Q ss_pred             HHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          159 ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       159 a~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      |+..|+ +|+++++++++.++++++|+++++++++    ++.+.+++..++++|+||||+|++..++.++++++++ |++
T Consensus       171 a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~----~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~-G~i  244 (346)
T 3fbg_A          171 AKAYGL-RVITTASRNETIEWTKKMGADIVLNHKE----SLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPR-GHI  244 (346)
T ss_dssp             HHHTTC-EEEEECCSHHHHHHHHHHTCSEEECTTS----CHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEE-EEE
T ss_pred             HHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEECCc----cHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccC-CEE
Confidence            999999 9999999999999999999999998865    5788888884349999999999988789999999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHhcCCEEEeeeccCCC--C-------CCCHHHHHHHHhCCCCCCCcceeeee---ccccHH
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK--A-------KSDIPILLKRYMDKELELDKFVTHEM---KFEEIN  306 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~-------~~~~~~~~~l~~~g~~~~~~~i~~~~---~l~~i~  306 (326)
                      +.++..    ...++...+..+++++.+++.....  .       .+.++++++++++|+++  +.++++|   ++++++
T Consensus       245 v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~~~~l~~~~  318 (346)
T 3fbg_A          245 ATIVAF----ENDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQ--PTTTKVIEGLTTENIY  318 (346)
T ss_dssp             EESSCC----SSCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSC--CCEEEEEESCCHHHHH
T ss_pred             EEECCC----CCCCccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEE--CCccceecCCCHHHHH
Confidence            988742    2345555667788999887543210  0       13478899999999765  4477777   899999


Q ss_pred             HHHHHHHcCcee-EEEEEeCC
Q 020435          307 SAFDLLIKGKCL-RCVIWMGE  326 (326)
Q Consensus       307 ~a~~~~~~~~~~-k~vv~~~~  326 (326)
                      +|++.+.+++.. |+++++++
T Consensus       319 ~A~~~~~~g~~~GKvvl~~~~  339 (346)
T 3fbg_A          319 QAHQILESNTMIGKLVINLNE  339 (346)
T ss_dssp             HHHHHHHTTCCCSEEEEEC--
T ss_pred             HHHHHHhcCCcceEEEEecCC
Confidence            999999998876 99999863

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=7.7e-42  Score=311.82  Aligned_cols=262  Identities=21%  Similarity=0.252  Sum_probs=220.9

Q ss_pred             CCC-CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            2 KDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         2 ~~~-~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      .++ +..+|.++|||++|+|+++|++++ |++||||++.                              ..+|       
T Consensus        71 ~~~~~~~~p~v~G~E~~G~V~~vG~~v~-~~vGDrV~~~------------------------------~~~G-------  112 (342)
T 4eye_A           71 EYQLKMEPPFVPGIETAGVVRSAPEGSG-IKPGDRVMAF------------------------------NFIG-------  112 (342)
T ss_dssp             CSSSCCCSSBCCCSEEEEEEEECCTTSS-CCTTCEEEEE------------------------------CSSC-------
T ss_pred             CCCCCCCCCCccceeEEEEEEEECCCCC-CCCCCEEEEe------------------------------cCCC-------
Confidence            344 357899999999999999999999 9999999653                              1233       


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGA  159 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la  159 (326)
                                  +|+||+.++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|
T Consensus       113 ------------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a  180 (342)
T 4eye_A          113 ------------GYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIA  180 (342)
T ss_dssp             ------------CSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHH
T ss_pred             ------------cceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence                        99999999999999999999999999999999999999888999999999999997 99999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      +..|+ +|+++++++++.++++++|+++++++.+    ++.+.+++.+++ ++|++|||+|.+. +..++++++++ |++
T Consensus       181 ~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~v~~~~~----~~~~~v~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~i  253 (342)
T 4eye_A          181 KGMGA-KVIAVVNRTAATEFVKSVGADIVLPLEE----GWAKAVREATGGAGVDMVVDPIGGPA-FDDAVRTLASE-GRL  253 (342)
T ss_dssp             HHTTC-EEEEEESSGGGHHHHHHHTCSEEEESST----THHHHHHHHTTTSCEEEEEESCC--C-HHHHHHTEEEE-EEE
T ss_pred             HHcCC-EEEEEeCCHHHHHHHHhcCCcEEecCch----hHHHHHHHHhCCCCceEEEECCchhH-HHHHHHhhcCC-CEE
Confidence            99999 9999999999999999999999998764    788899999988 9999999999986 89999999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHhcCCEEEeeeccCCC------CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHH
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL  312 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~  312 (326)
                      +.+|...+ ....++...++.+++++.+++.+.+.      ..++++++++++++|   ++++++++|+++++++|++.+
T Consensus       254 v~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g---l~~~i~~~~~l~~~~~A~~~~  329 (342)
T 4eye_A          254 LVVGFAAG-GIPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG---MRPPVSARIPLSEGRQALQDF  329 (342)
T ss_dssp             EEC-----------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT---CCCCEEEEEEGGGHHHHHHHH
T ss_pred             EEEEccCC-CCCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC---CCCCcceEEeHHHHHHHHHHH
Confidence            99987532 23345555567789999998754321      113588899999999   455688999999999999999


Q ss_pred             HcCcee-EEEEEe
Q 020435          313 IKGKCL-RCVIWM  324 (326)
Q Consensus       313 ~~~~~~-k~vv~~  324 (326)
                      .+++.. |+||++
T Consensus       330 ~~~~~~gKvvl~P  342 (342)
T 4eye_A          330 ADGKVYGKMVLVP  342 (342)
T ss_dssp             HTTCCCSEEEEEC
T ss_pred             HhCCCCceEEEeC
Confidence            998876 999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=2.7e-41  Score=308.04  Aligned_cols=266  Identities=18%  Similarity=0.243  Sum_probs=224.9

Q ss_pred             CCC-CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            2 KDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         2 ~~~-~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      .++ +..+|.++|||++|+|+++|++|++|++||||+..                              ..+|       
T Consensus        55 ~~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~------------------------------~~~G-------   97 (340)
T 3gms_A           55 AYAHRIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLPL------------------------------RGEG-------   97 (340)
T ss_dssp             TTTTTSCSSBCCCSCCEEEEEEECTTSCGGGTTCEEEEC------------------------------SSSC-------
T ss_pred             CCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEec------------------------------CCCc-------
Confidence            444 35789999999999999999999999999999642                              2233       


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGA  159 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la  159 (326)
                                  +|+||++++++.++++|+++|+++||++++..+|||+++.+.+++++|++|||+|+ |++|++++|+|
T Consensus        98 ------------~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a  165 (340)
T 3gms_A           98 ------------TWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLS  165 (340)
T ss_dssp             ------------SSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHH
T ss_pred             ------------cceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHH
Confidence                        99999999999999999999999999999999999999889999999999999998 69999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      +..|+ +|+++++++++.+.++++|+++++++.+   .++.+.+++.+++ ++|++|||+|.+. ....+++++++ |++
T Consensus       166 ~~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~~---~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~i  239 (340)
T 3gms_A          166 QILNF-RLIAVTRNNKHTEELLRLGAAYVIDTST---APLYETVMELTNGIGADAAIDSIGGPD-GNELAFSLRPN-GHF  239 (340)
T ss_dssp             HHHTC-EEEEEESSSTTHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESSCHHH-HHHHHHTEEEE-EEE
T ss_pred             HHcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCCc---ccHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHHhcCC-CEE
Confidence            99999 9999999999999999999999999888   8899999999988 9999999999988 56677999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHh-cCCEEEeeeccCC-------CCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHH
Q 020435          239 IVLGVDQPGSQLSLSSFEVLH-SGKILMGSLFGGL-------KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD  310 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~-------~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~  310 (326)
                      +.+|...+ .  .++...+.. +++.+........       ...++++++++++++|++++.. ++++|+++++++|++
T Consensus       240 v~~G~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~~l~~~~~A~~  315 (340)
T 3gms_A          240 LTIGLLSG-I--QVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTYELADVKAAVD  315 (340)
T ss_dssp             EECCCTTS-C--CCCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEEEEEGGGHHHHHH
T ss_pred             EEEeecCC-C--CCCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccEEEeHHHHHHHHH
Confidence            99997532 2  333333332 3455544432110       1134688999999999988754 679999999999999


Q ss_pred             HHHcCc-e-eEEEEEeCC
Q 020435          311 LLIKGK-C-LRCVIWMGE  326 (326)
Q Consensus       311 ~~~~~~-~-~k~vv~~~~  326 (326)
                      .+.+++ . +|+++++.+
T Consensus       316 ~~~~~~~~~GKvvl~~~~  333 (340)
T 3gms_A          316 VVQSAEKTKGKVFLTSYE  333 (340)
T ss_dssp             HHHCTTCCSSEEEEECC-
T ss_pred             HHHhcCCCCCeEEEEEec
Confidence            999987 4 599999753

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=3.1e-41  Score=310.08  Aligned_cols=265  Identities=16%  Similarity=0.157  Sum_probs=223.6

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      .+|...+|.++|||++|+|+++|++|++|++||||+..                           .+...+|        
T Consensus        75 ~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~---------------------------~~~~~~G--------  119 (363)
T 4dvj_A           75 TPPDGTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYA---------------------------GSIIRPG--------  119 (363)
T ss_dssp             CCC--CCSBCCCCCEEEEEEEECTTCCSCCTTCEEEEC---------------------------CCTTSCC--------
T ss_pred             CCCCCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEc---------------------------cCCCCCc--------
Confidence            34556889999999999999999999999999999753                           1222334        


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccC-----CCCEEEEEc-cCHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE-----VGSTVVIFG-LGSIGLAV  155 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~-----~~~~vlI~G-ag~~G~~a  155 (326)
                                 +|+||++++++.++++|+++|+++||+++++++|||+++.+.++++     +|++|||+| +|++|+++
T Consensus       120 -----------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a  188 (363)
T 4dvj_A          120 -----------TNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIA  188 (363)
T ss_dssp             -----------SCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHH
T ss_pred             -----------cceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHH
Confidence                       9999999999999999999999999999999999999988888988     899999998 59999999


Q ss_pred             HHHHHH-cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcC
Q 020435          156 AEGARL-CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG  234 (326)
Q Consensus       156 ~~la~~-~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~  234 (326)
                      +|+||+ .|+ +|+++++++++.++++++|+++++++.+    ++.+.+++..++++|+||||+|++..+..++++++++
T Consensus       189 ~qlak~~~g~-~Vi~~~~~~~~~~~~~~lGad~vi~~~~----~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~  263 (363)
T 4dvj_A          189 VQIARQRTDL-TVIATASRPETQEWVKSLGAHHVIDHSK----PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQ  263 (363)
T ss_dssp             HHHHHHHCCS-EEEEECSSHHHHHHHHHTTCSEEECTTS----CHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTT
T ss_pred             HHHHHHhcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC----CHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCC
Confidence            999998 488 9999999999999999999999999864    6888888884449999999999987689999999998


Q ss_pred             CcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCC-----CC----CCCHHHHHHHHhCCCCCCCcceeeee---cc
Q 020435          235 WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL-----KA----KSDIPILLKRYMDKELELDKFVTHEM---KF  302 (326)
Q Consensus       235 ~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~----~~~~~~~~~l~~~g~~~~~~~i~~~~---~l  302 (326)
                       |+++.++..     ..++...+..+++++.++.....     ..    .+.++++++++++|++++  .+++++   ++
T Consensus       264 -G~iv~~g~~-----~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~~l  335 (363)
T 4dvj_A          264 -GRFCLIDDP-----SAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRT--TLTNRLSPINA  335 (363)
T ss_dssp             -CEEEECSCC-----SSCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCC--CEEEEECSCSH
T ss_pred             -CEEEEECCC-----CccchHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeec--cccceecCCCH
Confidence             999999642     24555666778899988654321     00    235788999999997764  466655   99


Q ss_pred             ccHHHHHHHHHcCcee-EEEEEeC
Q 020435          303 EEINSAFDLLIKGKCL-RCVIWMG  325 (326)
Q Consensus       303 ~~i~~a~~~~~~~~~~-k~vv~~~  325 (326)
                      +++++|++.+.+++.. |+||++.
T Consensus       336 ~~~~~A~~~~~~~~~~GKvVl~~~  359 (363)
T 4dvj_A          336 ANLKQAHALVESGTARGKVVIEGF  359 (363)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEEECS
T ss_pred             HHHHHHHHHHHhCCCceEEEEeCc
Confidence            9999999999998876 9999874

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=5.5e-42  Score=313.70  Aligned_cols=266  Identities=16%  Similarity=0.140  Sum_probs=223.2

Q ss_pred             CCC-CCCCCcccCCceeEEEEEecCCC-CCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 020435            2 KDF-PAVFPRILGHEAIGVVESVGENV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD   79 (326)
Q Consensus         2 ~~~-~~~~p~i~G~e~~G~V~~~G~~v-~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~   79 (326)
                      .++ +..+|.++|||++|+|+++|++| ++|++||||++.                           .|...+|      
T Consensus        72 ~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~---------------------------~g~~~~G------  118 (349)
T 3pi7_A           72 QYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFA---------------------------TGLSNWG------  118 (349)
T ss_dssp             CSSSCBCTTSBCCSEEEEEEEEECSSHHHHHHTTCEEEEE---------------------------CTTSSCC------
T ss_pred             cCCCCCCCCCCccceEEEEEEEECCCccCCCCCCCEEEEe---------------------------ccCCCCc------
Confidence            344 34789999999999999999999 999999999864                           3333445      


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCC-CEEEEEc-cCHHHHHHHH
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVG-STVVIFG-LGSIGLAVAE  157 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~-~~vlI~G-ag~~G~~a~~  157 (326)
                                   +|+||++++++.++++|+++++++||++++..+|||+ +++.++ +++ ++|||+| +|++|++++|
T Consensus       119 -------------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~q  183 (349)
T 3pi7_A          119 -------------SWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIG  183 (349)
T ss_dssp             -------------SSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHH
T ss_pred             -------------cceeeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHH
Confidence                         9999999999999999999999999999999999996 566666 666 7899985 5999999999


Q ss_pred             HHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCc
Q 020435          158 GARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWG  236 (326)
Q Consensus       158 la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G  236 (326)
                      +|+..|+ +|+++++++++.++++++|+++++++.+   .++.+.+++.+++ ++|++|||+|.+. +..++++++++ |
T Consensus       184 la~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~v~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-G  257 (349)
T 3pi7_A          184 LAKEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEKA---PDFEATLREVMKAEQPRIFLDAVTGPL-ASAIFNAMPKR-A  257 (349)
T ss_dssp             HHHHHTC-EEEEEESCGGGHHHHHHHTCSEEEETTS---TTHHHHHHHHHHHHCCCEEEESSCHHH-HHHHHHHSCTT-C
T ss_pred             HHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCc---HHHHHHHHHHhcCCCCcEEEECCCChh-HHHHHhhhcCC-C
Confidence            9999999 9999999999999999999999999988   8899999999987 9999999999988 78999999998 9


Q ss_pred             EEEEeccCCCCCcccccH-HHHHhcCCEEEeeeccCCC------CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHH
Q 020435          237 KTIVLGVDQPGSQLSLSS-FEVLHSGKILMGSLFGGLK------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF  309 (326)
Q Consensus       237 ~~v~~g~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~  309 (326)
                      +++.+|... .....++. ..++.|++++.+++.+.+.      ..++++++++++++|+++  ++++++|+++++++|+
T Consensus       258 ~iv~~G~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~  334 (349)
T 3pi7_A          258 RWIIYGRLD-PDATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWS--TDVTAVVPLAEAIAWV  334 (349)
T ss_dssp             EEEECCCSC-CSCCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSCC--C-CCEEEEHHHHHHHH
T ss_pred             EEEEEeccC-CCCCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCcc--cccceEEcHHHHHHHH
Confidence            999999643 23445666 6778899999998754321      124578888999999774  5588999999999999


Q ss_pred             HHHHcCceeEEEEEe
Q 020435          310 DLLIKGKCLRCVIWM  324 (326)
Q Consensus       310 ~~~~~~~~~k~vv~~  324 (326)
                      +.+.++..+|++|++
T Consensus       335 ~~~~~~~~gKvvl~p  349 (349)
T 3pi7_A          335 PAELTKPNGKVFIRP  349 (349)
T ss_dssp             HHHHTSSSSCEEEEC
T ss_pred             HHHhCCCCceEEEeC
Confidence            976666556999875

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-41  Score=310.12  Aligned_cols=263  Identities=19%  Similarity=0.296  Sum_probs=216.2

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      +..+|.++|||++|+|+++|++|++|++||||+...                              .+|           
T Consensus        57 ~~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~------------------------------~~G-----------   95 (349)
T 4a27_A           57 PPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFV------------------------------NYN-----------   95 (349)
T ss_dssp             CCCSSBCCCSEEEEEEEEECTTCCSCCTTCEEEEEC------------------------------SSC-----------
T ss_pred             CCCCCccccceeEEEEEEeCCCCCCCCCCCEEEEec------------------------------CCC-----------
Confidence            457899999999999999999999999999996532                              223           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCG  163 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g  163 (326)
                              +|+||+.++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|
T Consensus        96 --------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g  167 (349)
T 4a27_A           96 --------AWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVP  167 (349)
T ss_dssp             --------CSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTST
T ss_pred             --------cceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC
Confidence                    99999999999999999999999999999999999999888899999999999998 999999999999986


Q ss_pred             CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          164 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       164 ~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..+|++++ ++++.+.++ +|++++++ .+   .++.+.+++.+++++|+||||+|++. +..++++++++ |+++.+|.
T Consensus       168 ~~~V~~~~-~~~~~~~~~-~ga~~~~~-~~---~~~~~~~~~~~~~g~Dvv~d~~g~~~-~~~~~~~l~~~-G~~v~~G~  239 (349)
T 4a27_A          168 NVTVFGTA-STFKHEAIK-DSVTHLFD-RN---ADYVQEVKRISAEGVDIVLDCLCGDN-TGKGLSLLKPL-GTYILYGS  239 (349)
T ss_dssp             TCEEEEEE-CGGGHHHHG-GGSSEEEE-TT---SCHHHHHHHHCTTCEEEEEEECC--------CTTEEEE-EEEEEEC-
T ss_pred             CcEEEEeC-CHHHHHHHH-cCCcEEEc-CC---ccHHHHHHHhcCCCceEEEECCCchh-HHHHHHHhhcC-CEEEEECC
Confidence            43899888 678888888 99999999 55   78999999988679999999999988 68999999998 99999986


Q ss_pred             CCCC---------------CcccccHHHHHhcCCEEEeeeccCCC--------CCCCHHHHHHHHhCCCCCCCcceeeee
Q 020435          244 DQPG---------------SQLSLSSFEVLHSGKILMGSLFGGLK--------AKSDIPILLKRYMDKELELDKFVTHEM  300 (326)
Q Consensus       244 ~~~~---------------~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~l~~~g~~~~~~~i~~~~  300 (326)
                      ....               ....++...++.+++++.++......        .+++++++++++++|+++  ++++++|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~  317 (349)
T 4a27_A          240 SNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIK--PVVDSLW  317 (349)
T ss_dssp             ------------------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSCC--CCEEEEE
T ss_pred             CcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCcc--ccccceE
Confidence            4311               11235666777889999988653211        135688999999999764  5688999


Q ss_pred             ccccHHHHHHHHHcCcee-EEEEEeCC
Q 020435          301 KFEEINSAFDLLIKGKCL-RCVIWMGE  326 (326)
Q Consensus       301 ~l~~i~~a~~~~~~~~~~-k~vv~~~~  326 (326)
                      +++++++|++.+.+++.. |+||++++
T Consensus       318 ~l~~~~~A~~~l~~~~~~GKvvi~~~~  344 (349)
T 4a27_A          318 ALEEVKEAMQRIHDRGNIGKLILDVEK  344 (349)
T ss_dssp             CGGGHHHHHHHHHTTCCSSEEEEETTC
T ss_pred             CHHHHHHHHHHHHhCCCCceEEEecCC
Confidence            999999999999988776 99999864

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=2e-42  Score=312.31  Aligned_cols=254  Identities=20%  Similarity=0.222  Sum_probs=199.5

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      .++...+|.++|||++|+|+++|++|++|++||||+..+                           +...+|        
T Consensus        52 ~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~---------------------------~~~~~G--------   96 (315)
T 3goh_A           52 NPINWSNGHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHT---------------------------SLKRHG--------   96 (315)
T ss_dssp             CTTCCCTTCCCCSEEEEEEEEECTTSCGGGTTCEEEEEC---------------------------CTTSCC--------
T ss_pred             CCCcCCCCCEeeeeeEEEEEEeCCCCCCCCCCCEEEEeC---------------------------CCCCCc--------
Confidence            455668999999999999999999999999999998752                           233344        


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHH
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL  161 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~  161 (326)
                                 +|+||+.++++.++++|+++++++||+++++++|||+++ +.+++++|++|||+|+|++|++++|+||+
T Consensus        97 -----------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~  164 (315)
T 3goh_A           97 -----------SFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNN  164 (315)
T ss_dssp             -----------SSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHH
T ss_pred             -----------ccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence                       999999999999999999999999999999999999988 88999999999999999999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .|+ +|++++ ++++.++++++|++++++  +      .+.+    ++++|+||||+|++. ...++++++++ |+++.+
T Consensus       165 ~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~--d------~~~v----~~g~Dvv~d~~g~~~-~~~~~~~l~~~-G~~v~~  228 (315)
T 3goh_A          165 AGY-VVDLVS-ASLSQALAAKRGVRHLYR--E------PSQV----TQKYFAIFDAVNSQN-AAALVPSLKAN-GHIICI  228 (315)
T ss_dssp             HTC-EEEEEC-SSCCHHHHHHHTEEEEES--S------GGGC----CSCEEEEECC--------TTGGGEEEE-EEEEEE
T ss_pred             cCC-EEEEEE-ChhhHHHHHHcCCCEEEc--C------HHHh----CCCccEEEECCCchh-HHHHHHHhcCC-CEEEEE
Confidence            999 999999 999999999999999984  1      1112    449999999999988 68899999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCC---CC-------CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHH
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGL---KA-------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL  311 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~-------~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~  311 (326)
                      +.....  ..+.   .+.+++.+........   ..       .++++++++++++|+++  ++++++|+++++++|++.
T Consensus       229 g~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~  301 (315)
T 3goh_A          229 QDRIPA--PIDP---AFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKME--IAAPDIFRFEQMIEALDH  301 (315)
T ss_dssp             CCC---------------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSSC--CCCCEEEEGGGHHHHHHH
T ss_pred             eCCCCc--cccc---hhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHHCCCcc--cccceEecHHHHHHHHHH
Confidence            754221  1111   2223444443322111   00       12467899999999765  568899999999999999


Q ss_pred             HHcCceeEEEEEeCC
Q 020435          312 LIKGKCLRCVIWMGE  326 (326)
Q Consensus       312 ~~~~~~~k~vv~~~~  326 (326)
                      +. ...+|+++++++
T Consensus       302 ~~-~~~gKvvi~~~~  315 (315)
T 3goh_A          302 SE-QTKLKTVLTLNE  315 (315)
T ss_dssp             HH-HHCCCEEEESCC
T ss_pred             HH-hcCCcEEEEecC
Confidence            98 555699999875

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=1.3e-40  Score=302.74  Aligned_cols=264  Identities=20%  Similarity=0.278  Sum_probs=225.7

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++|++|++||||+..+.                             .+             
T Consensus        58 ~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~-----------------------------~~-------------   95 (333)
T 1wly_A           58 GEPPIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLP-----------------------------PL-------------   95 (333)
T ss_dssp             --CCEECCCEEEEEEEEECTTCCSCCTTCEEEECSS-----------------------------SC-------------
T ss_pred             CCCCccccceeEEEEEEECCCCCCCCCCCEEEEecC-----------------------------CC-------------
Confidence            468999999999999999999999999999965310                             12             


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccc--cccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHc
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR--ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC  162 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~--aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~  162 (326)
                            |+|+||++++++.++++|+++|+++  ||+++++++|||+++.+.++++++++|||+|+ |++|++++|+++..
T Consensus        96 ------G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~  169 (333)
T 1wly_A           96 ------GAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHL  169 (333)
T ss_dssp             ------CCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHT
T ss_pred             ------CcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHC
Confidence                  3999999999999999999999999  99999999999998877889999999999996 99999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      |+ +|+++++++++.+.++++|++++++..+   .++.+.+.+.+.+ ++|++|||+|... ++.++++++++ |+++.+
T Consensus       170 G~-~Vi~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~~~i~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~iv~~  243 (333)
T 1wly_A          170 GA-TVIGTVSTEEKAETARKLGCHHTINYST---QDFAEVVREITGGKGVDVVYDSIGKDT-LQKSLDCLRPR-GMCAAY  243 (333)
T ss_dssp             TC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHHTTCCEEEEEECSCTTT-HHHHHHTEEEE-EEEEEC
T ss_pred             CC-EEEEEeCCHHHHHHHHHcCCCEEEECCC---HHHHHHHHHHhCCCCCeEEEECCcHHH-HHHHHHhhccC-CEEEEE
Confidence            99 9999999999999999999999999877   7888888888877 9999999999955 89999999998 999999


Q ss_pred             ccCCCCCcccccHH-HHHhcC--CEEEeeeccCCCC----CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHc
Q 020435          242 GVDQPGSQLSLSSF-EVLHSG--KILMGSLFGGLKA----KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK  314 (326)
Q Consensus       242 g~~~~~~~~~~~~~-~~~~~~--~~i~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~  314 (326)
                      |...+ ....++.. .++.|+  +++.|++......    +++++++++++++|+++  +.++++|+++++++|++.+.+
T Consensus       244 g~~~~-~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~  320 (333)
T 1wly_A          244 GHASG-VADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLH--SSVAKTFPLREAAAAHKYMGG  320 (333)
T ss_dssp             CCTTC-CCCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCC--CCEEEEEEGGGHHHHHHHHHH
T ss_pred             ecCCC-CcCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCcC--CCcceEEeHHHHHHHHHHHHc
Confidence            97532 23456665 667788  8888875421111    13588899999999765  458899999999999999988


Q ss_pred             Ccee-EEEEEeCC
Q 020435          315 GKCL-RCVIWMGE  326 (326)
Q Consensus       315 ~~~~-k~vv~~~~  326 (326)
                      ++.. |+++.+++
T Consensus       321 ~~~~gKvvi~~~~  333 (333)
T 1wly_A          321 RQTIGSIVLLPQA  333 (333)
T ss_dssp             CSCCSEEEEETTC
T ss_pred             CCCceEEEEEeCC
Confidence            7655 99999875

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=3e-40  Score=301.43  Aligned_cols=259  Identities=18%  Similarity=0.208  Sum_probs=221.8

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~   84 (326)
                      ..+|.++|||++|+|+++|++|++|++||||+....                          +.. .+|           
T Consensus        61 ~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~--------------------------g~~~~~G-----------  103 (343)
T 3gaz_A           61 QPLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTG--------------------------GVGGLQG-----------  103 (343)
T ss_dssp             CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECC--------------------------SSTTCCC-----------
T ss_pred             CCCCcccCcceEEEEEEECCCCCCCCCCCEEEEEeC--------------------------CCCCCCc-----------
Confidence            578999999999999999999999999999975311                          111 233           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCG  163 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g  163 (326)
                              +|+||++++++.++++|+++|+++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|
T Consensus       104 --------~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~G  175 (343)
T 3gaz_A          104 --------THAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARG  175 (343)
T ss_dssp             --------SSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             --------ceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCC
Confidence                    99999999999999999999999999999999999998888999999999999995 999999999999999


Q ss_pred             CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          164 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       164 ~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      + +|+++ .++++.++++++|++. ++ .+   .++.+.+++.+++ ++|++|||+|++. +..++++++++ |+++.++
T Consensus       176 a-~Vi~~-~~~~~~~~~~~lGa~~-i~-~~---~~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~g  246 (343)
T 3gaz_A          176 A-RVFAT-ARGSDLEYVRDLGATP-ID-AS---REPEDYAAEHTAGQGFDLVYDTLGGPV-LDASFSAVKRF-GHVVSCL  246 (343)
T ss_dssp             C-EEEEE-ECHHHHHHHHHHTSEE-EE-TT---SCHHHHHHHHHTTSCEEEEEESSCTHH-HHHHHHHEEEE-EEEEESC
T ss_pred             C-EEEEE-eCHHHHHHHHHcCCCE-ec-cC---CCHHHHHHHHhcCCCceEEEECCCcHH-HHHHHHHHhcC-CeEEEEc
Confidence            9 99999 7999999999999998 77 55   6788999999988 9999999999866 99999999998 9999998


Q ss_pred             cCCCCCcccccHHHHHhcCCEEEeeeccCC----C----CCCCHHHHHHHHhCCCCCCCccee-eeeccccHHHHHHHHH
Q 020435          243 VDQPGSQLSLSSFEVLHSGKILMGSLFGGL----K----AKSDIPILLKRYMDKELELDKFVT-HEMKFEEINSAFDLLI  313 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~----~~~~~~~~~~l~~~g~~~~~~~i~-~~~~l~~i~~a~~~~~  313 (326)
                      ...     .++...+..+++++.+++....    .    ..++++++++++++|+++  +.++ ++|+++++++|++.+.
T Consensus       247 ~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~~l~~~~~A~~~~~  319 (343)
T 3gaz_A          247 GWG-----THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLA--PRLDPRTFSIAEIGSAYDAVL  319 (343)
T ss_dssp             CCS-----CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCC--CCBCSCCEETTCHHHHHHHHH
T ss_pred             ccC-----ccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCcc--cCccCcEecHHHHHHHHHHHH
Confidence            643     3345566778999998753211    0    124688999999999775  4577 7999999999999999


Q ss_pred             cCce-----eEEEEEeC
Q 020435          314 KGKC-----LRCVIWMG  325 (326)
Q Consensus       314 ~~~~-----~k~vv~~~  325 (326)
                      +++.     +|+++++.
T Consensus       320 ~~~~~Gr~~GK~v~~~~  336 (343)
T 3gaz_A          320 GRNDVPRQRGKIAITVE  336 (343)
T ss_dssp             TCTTCCCCSSBCEEECC
T ss_pred             cCCCcccccceEEEEec
Confidence            8754     39999875

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=3.8e-40  Score=298.12  Aligned_cols=254  Identities=19%  Similarity=0.207  Sum_probs=215.3

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCccccccCCc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGE   83 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~   83 (326)
                      +..+|.++|||++|+|+++|++|++|++||||++.+                           ++ ..+|          
T Consensus        64 ~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~---------------------------~~~~~~G----------  106 (321)
T 3tqh_A           64 KNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIA---------------------------GFPDHPC----------  106 (321)
T ss_dssp             TTSCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEEC---------------------------STTTCCC----------
T ss_pred             cCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEcc---------------------------CCCCCCC----------
Confidence            457899999999999999999999999999998753                           22 1233          


Q ss_pred             ccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEc-cCHHHHHHHHHHHHc
Q 020435           84 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLC  162 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~G-ag~~G~~a~~la~~~  162 (326)
                               +|+||+.++++.++++|+++++++||+++++++|||+++ +.+++++|++|||+| +|++|++++|+|+..
T Consensus       107 ---------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~  176 (321)
T 3tqh_A          107 ---------CYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK  176 (321)
T ss_dssp             ---------CSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT
T ss_pred             ---------cceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence                     999999999999999999999999999999999999987 889999999999997 599999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCcc-HHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS-VSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~-~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      |+ +|++++ ++++.++++++|+++++++.+   .+ +.+.+     .++|+||||+|++. ...++++++++ |+++.+
T Consensus       177 Ga-~vi~~~-~~~~~~~~~~lGa~~~i~~~~---~~~~~~~~-----~g~D~v~d~~g~~~-~~~~~~~l~~~-G~iv~~  244 (321)
T 3tqh_A          177 GT-TVITTA-SKRNHAFLKALGAEQCINYHE---EDFLLAIS-----TPVDAVIDLVGGDV-GIQSIDCLKET-GCIVSV  244 (321)
T ss_dssp             TC-EEEEEE-CHHHHHHHHHHTCSEEEETTT---SCHHHHCC-----SCEEEEEESSCHHH-HHHHGGGEEEE-EEEEEC
T ss_pred             CC-EEEEEe-ccchHHHHHHcCCCEEEeCCC---cchhhhhc-----cCCCEEEECCCcHH-HHHHHHhccCC-CEEEEe
Confidence            99 899998 566788999999999999887   55 54433     38999999999998 59999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EE
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RC  320 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~  320 (326)
                      +....    ......+..+++++.+++..  ...++++++++++++|++++  .++++|+++++++|++.+.+++.. |+
T Consensus       245 g~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~l~~--~i~~~~~l~~~~~A~~~~~~~~~~gKv  316 (321)
T 3tqh_A          245 PTITA----GRVIEVAKQKHRRAFGLLKQ--FNIEELHYLGKLVSEDKLRI--EISRIFQLSEAVTAHELLETGHVRGKL  316 (321)
T ss_dssp             CSTTH----HHHHHHHHHTTCEEECCCCC--CCHHHHHHHHHHHHTTSSCC--CEEEEECGGGHHHHHHHHHTTCCCSEE
T ss_pred             CCCCc----hhhhhhhhhcceEEEEEecC--CCHHHHHHHHHHHHCCCccc--ccccEEcHHHHHHHHHHHHcCCCCceE
Confidence            75421    11223355678888885422  22467999999999998765  488999999999999999998876 99


Q ss_pred             EEEeC
Q 020435          321 VIWMG  325 (326)
Q Consensus       321 vv~~~  325 (326)
                      +++++
T Consensus       317 vl~~~  321 (321)
T 3tqh_A          317 VFKVR  321 (321)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99874

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1e-39  Score=298.76  Aligned_cols=259  Identities=20%  Similarity=0.302  Sum_probs=221.0

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++|++|++|++||||++.+.                             .+|            
T Consensus        85 ~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~~G------------  123 (351)
T 1yb5_A           85 PLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSST-----------------------------ISG------------  123 (351)
T ss_dssp             CCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCC-----------------------------SSC------------
T ss_pred             CCCCCcCCceeEEEEEEECCCCCCCCCCCEEEEeCC-----------------------------CCC------------
Confidence            468999999999999999999999999999975321                             123            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                             +|+||++++++.++++|+++|+++||+++++++|||+++.+.++++++++|||+|+ |++|++++|+++..|+
T Consensus       124 -------~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga  196 (351)
T 1yb5_A          124 -------GYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL  196 (351)
T ss_dssp             -------SSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC
T ss_pred             -------cceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC
Confidence                   99999999999999999999999999999999999998877899999999999997 9999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +|+++++++++.+.++++|+++++++.+   .++.+.+.+.+++ ++|++|||+|... +..++++++++ |+++.+|.
T Consensus       197 -~Vi~~~~~~~~~~~~~~~ga~~~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~G~~~-~~~~~~~l~~~-G~iv~~g~  270 (351)
T 1yb5_A          197 -KILGTAGTEEGQKIVLQNGAHEVFNHRE---VNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLLSHG-GRVIVVGS  270 (351)
T ss_dssp             -EEEEEESSHHHHHHHHHTTCSEEEETTS---TTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHEEEE-EEEEECCC
T ss_pred             -EEEEEeCChhHHHHHHHcCCCEEEeCCC---chHHHHHHHHcCCCCcEEEEECCChHH-HHHHHHhccCC-CEEEEEec
Confidence             9999999999999999999999999887   7888889888877 9999999999876 88999999998 99999986


Q ss_pred             CCCCCcccccHHHHHhcCCEEEeeeccCCCCCCCHH----HHHHHHhCCCCCCCcceeeeeccccHHHHHHH-HHcCce-
Q 020435          244 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIP----ILLKRYMDKELELDKFVTHEMKFEEINSAFDL-LIKGKC-  317 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~-~~~~~~-  317 (326)
                      .   ....++...++.+++++.++...... .++++    .+.+++++|++  +++++++|+++++++|++. +++++. 
T Consensus       271 ~---~~~~~~~~~~~~~~~~i~g~~~~~~~-~~~~~~~~~~l~~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~~  344 (351)
T 1yb5_A          271 R---GTIEINPRDTMAKESSIIGVTLFSST-KEEFQQYAAALQAGMEIGWL--KPVIGSQYPLEKVAEAHENIIHGSGAT  344 (351)
T ss_dssp             C---SCEEECTHHHHTTTCEEEECCGGGCC-HHHHHHHHHHHHHHHHHTCC--CCCEEEEEEGGGHHHHHHHHHHSSCCS
T ss_pred             C---CCCccCHHHHHhCCcEEEEEEeecCC-HHHHHHHHHHHHHHHHCCCc--cCccceEEcHHHHHHHHHHHHHhCCCC
Confidence            3   23456666777889999998643221 23343    45567778865  4568899999999999998 565444 


Q ss_pred             eEEEEEe
Q 020435          318 LRCVIWM  324 (326)
Q Consensus       318 ~k~vv~~  324 (326)
                      +|++|++
T Consensus       345 gKvvi~~  351 (351)
T 1yb5_A          345 GKMILLL  351 (351)
T ss_dssp             SEEEEEC
T ss_pred             eEEEEeC
Confidence            5999864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.2e-40  Score=298.61  Aligned_cols=267  Identities=15%  Similarity=0.198  Sum_probs=224.6

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      |.+|...+|.++|||++|+|+++|++|++|++||||. .+                           | ..+        
T Consensus        50 g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~-~~---------------------------g-~~~--------   92 (327)
T 1qor_A           50 GLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVV-YA---------------------------Q-SAL--------   92 (327)
T ss_dssp             TSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTTCEEE-ES---------------------------C-CSS--------
T ss_pred             CCCCCCCCCCCCCceeEEEEEEECCCCCCCCCCCEEE-EC---------------------------C-CCC--------
Confidence            3445556899999999999999999999999999993 21                           0 012        


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGA  159 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la  159 (326)
                                 |+|+||++++++.++++|+++|+++||+++++++|||+++.+.++++++++|||+|+ |++|++++|++
T Consensus        93 -----------G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a  161 (327)
T 1qor_A           93 -----------GAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA  161 (327)
T ss_dssp             -----------CCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHH
T ss_pred             -----------ceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHH
Confidence                       399999999999999999999999999999999999998877899999999999995 99999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      +..|+ +|+++++++++.+.++++|++++++..+   .++.+.+.+.+.+ ++|++|||+|... ++.++++++++ |++
T Consensus       162 ~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~D~vi~~~g~~~-~~~~~~~l~~~-G~i  235 (327)
T 1qor_A          162 KALGA-KLIGTVGTAQKAQSALKAGAWQVINYRE---EDLVERLKEITGGKKVRVVYDSVGRDT-WERSLDCLQRR-GLM  235 (327)
T ss_dssp             HHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTCCEEEEEECSCGGG-HHHHHHTEEEE-EEE
T ss_pred             HHcCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC---ccHHHHHHHHhCCCCceEEEECCchHH-HHHHHHHhcCC-CEE
Confidence            99999 9999999999999999999999999877   7888889888877 9999999999555 99999999998 999


Q ss_pred             EEeccCCCCCcccccHHHHHhc-CCEEEeeeccCCC-----CCCCHHHHHHHHhCCCCCCCccee--eeeccccHHHHHH
Q 020435          239 IVLGVDQPGSQLSLSSFEVLHS-GKILMGSLFGGLK-----AKSDIPILLKRYMDKELELDKFVT--HEMKFEEINSAFD  310 (326)
Q Consensus       239 v~~g~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~~i~--~~~~l~~i~~a~~  310 (326)
                      +.+|.... ....++...++.+ ++++.+...+.+.     ..++++++++++++|++++  .++  ++|+++++++|++
T Consensus       236 v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~l~~~~~A~~  312 (327)
T 1qor_A          236 VSFGNSSG-AVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKV--DVAEQQKYPLKDAQRAHE  312 (327)
T ss_dssp             EECCCTTC-CCCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSCC--CCCGGGEEEGGGHHHHHH
T ss_pred             EEEecCCC-CCCccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCccc--ccccCcEEcHHHHHHHHH
Confidence            99997532 2345666667777 7877765332111     1235788999999997764  577  8999999999999


Q ss_pred             HHHcCcee-EEEEEe
Q 020435          311 LLIKGKCL-RCVIWM  324 (326)
Q Consensus       311 ~~~~~~~~-k~vv~~  324 (326)
                      .+.+++.. |+++.+
T Consensus       313 ~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          313 ILESRATQGSSLLIP  327 (327)
T ss_dssp             HHHTTCCCBCCEEEC
T ss_pred             HHHhCCCCceEEEeC
Confidence            99887654 998864

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1e-39  Score=300.31  Aligned_cols=263  Identities=16%  Similarity=0.144  Sum_probs=217.6

Q ss_pred             cccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccccccc
Q 020435           10 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFV   89 (326)
Q Consensus        10 ~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~   89 (326)
                      .++|||++|+|+++|++|++|++||||++.+.                             ..                 
T Consensus        74 ~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~~-----------------  107 (364)
T 1gu7_A           74 APCGNEGLFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------NF-----------------  107 (364)
T ss_dssp             EECCSCCEEEEEEECTTCCSCCTTCEEEESSS-----------------------------CC-----------------
T ss_pred             cccCceeEEEEEEeCCCCCcCCCCCEEEecCC-----------------------------CC-----------------
Confidence            89999999999999999999999999976421                             12                 


Q ss_pred             ccccccceEEecccceEEcCC-----------CCCccccccccchhhhhhhhhhhhcccCCC-CEEEEEcc-CHHHHHHH
Q 020435           90 SVSSFSEYTVLDIAHVVKVDP-----------TVPPNRACLLSCGVSTGVGAAWRTANVEVG-STVVIFGL-GSIGLAVA  156 (326)
Q Consensus        90 ~~g~~a~~~~v~~~~~~~ip~-----------~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~-~~vlI~Ga-g~~G~~a~  156 (326)
                        |+|+||++++++.++++|+           ++|+++||+++++++|||+++.+.+++++| ++|||+|+ |++|++++
T Consensus       108 --G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~ai  185 (364)
T 1gu7_A          108 --GTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYAS  185 (364)
T ss_dssp             --CCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHH
T ss_pred             --CcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHH
Confidence              3999999999999999999           899999999999999999988777899999 99999997 99999999


Q ss_pred             HHHHHcCCCEEEEEcCChhH----HHHHHhcCCcEEEcCCCCCCccHHHHHHHhc--CC-CccEEEEcCCcHHHHHHHHH
Q 020435          157 EGARLCGATRIIGVDVISEK----FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT--DG-GADYCFECVGLASLVQEAYA  229 (326)
Q Consensus       157 ~la~~~g~~~V~~~~~~~~~----~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~--~~-g~d~v~d~~g~~~~~~~~~~  229 (326)
                      |+||..|+ +|++++++.++    .++++++|+++++++++....++.+.+++.+  ++ ++|+||||+|++. ...+++
T Consensus       186 qlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~-~~~~~~  263 (364)
T 1gu7_A          186 QIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIAR  263 (364)
T ss_dssp             HHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHH
T ss_pred             HHHHHCCC-EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchh-HHHHHH
Confidence            99999999 89888866654    5778899999999875200146788888888  55 9999999999988 448899


Q ss_pred             HhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCC------CCCHHHHHHHHhCCCCCCCcceeeee-cc
Q 020435          230 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA------KSDIPILLKRYMDKELELDKFVTHEM-KF  302 (326)
Q Consensus       230 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~~~g~~~~~~~i~~~~-~l  302 (326)
                      +++++ |+++.+|... .....++...++.+++++.+++...+..      .++++++++++++|++++....+..+ ++
T Consensus       264 ~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l  341 (364)
T 1gu7_A          264 KLNNN-GLMLTYGGMS-FQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGT  341 (364)
T ss_dssp             TSCTT-CEEEECCCCS-SCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSS
T ss_pred             HhccC-CEEEEecCCC-CCCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCch
Confidence            99998 9999998753 2345677777778899999986542110      24688999999999888765544444 45


Q ss_pred             ccHHHHHHHHHcCcee-EEEEEe
Q 020435          303 EEINSAFDLLIKGKCL-RCVIWM  324 (326)
Q Consensus       303 ~~i~~a~~~~~~~~~~-k~vv~~  324 (326)
                      +++++|++.+.+++.. |++|++
T Consensus       342 ~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          342 KPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             SCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             hhHHHHHHHHHhCCCCceEEEeC
Confidence            6999999999887654 999875

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=1.3e-40  Score=301.55  Aligned_cols=266  Identities=15%  Similarity=0.106  Sum_probs=220.0

Q ss_pred             CCC-CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            2 KDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         2 ~~~-~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      .+| ...+|.++|||++|+|+++|  +++|++||||++.+.                        ..|...+|       
T Consensus        50 ~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~vGdrV~~~~~------------------------~~g~~~~G-------   96 (324)
T 3nx4_A           50 KGKIIRHFPMIPGIDFAGTVHASE--DPRFHAGQEVLLTGW------------------------GVGENHWG-------   96 (324)
T ss_dssp             CTTCCCSSSBCCCSEEEEEEEEES--STTCCTTCEEEEECT------------------------TBTTTBCC-------
T ss_pred             CCCCCCCCCccccceeEEEEEEeC--CCCCCCCCEEEEccc------------------------ccCCCCCC-------
Confidence            444 35789999999999999998  578999999987531                        03334445       


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhh--hhcccCCCC-EEEEEcc-CHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVA  156 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~--~~~~~~~~~-~vlI~Ga-g~~G~~a~  156 (326)
                                  +|+||+.++++.++++|+++|+++||++++.++|||+++.  ...++++++ +|||+|+ |++|++++
T Consensus        97 ------------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~ai  164 (324)
T 3nx4_A           97 ------------GLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAV  164 (324)
T ss_dssp             ------------SSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHH
T ss_pred             ------------ceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHH
Confidence                        9999999999999999999999999999999999998865  345566533 4999997 99999999


Q ss_pred             HHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCc
Q 020435          157 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG  236 (326)
Q Consensus       157 ~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G  236 (326)
                      |+||+.|+ +|+++++++++.++++++|+++++|+.+   .+.   +++++++++|++|||+|++. ++.++++++++ |
T Consensus       165 qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~---~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~-G  235 (324)
T 3nx4_A          165 ALLHKLGY-QVAAVSGRESTHGYLKSLGANRILSRDE---FAE---SRPLEKQLWAGAIDTVGDKV-LAKVLAQMNYG-G  235 (324)
T ss_dssp             HHHHHTTC-CEEEEESCGGGHHHHHHHTCSEEEEGGG---SSC---CCSSCCCCEEEEEESSCHHH-HHHHHHTEEEE-E
T ss_pred             HHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecCC---HHH---HHhhcCCCccEEEECCCcHH-HHHHHHHHhcC-C
Confidence            99999999 9999999999999999999999999876   332   44555569999999999985 99999999998 9


Q ss_pred             EEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCCC---CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHH
Q 020435          237 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI  313 (326)
Q Consensus       237 ~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~  313 (326)
                      +++.+|... ....+++...++.|++++.+++......   .+.++++++++++|++++  . +++|+++++++|++.+.
T Consensus       236 ~iv~~G~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~-~~~~~l~~~~~A~~~~~  311 (324)
T 3nx4_A          236 CVAACGLAG-GFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFYAQ--A-ATEITLADAPKFADAII  311 (324)
T ss_dssp             EEEECCCTT-CSEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHHH--H-EEEEEGGGHHHHHHHHH
T ss_pred             EEEEEecCC-CCCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCCCCC--C-ceeEeHHHHHHHHHHHH
Confidence            999999753 3345666677788899999986443211   135788899999997653  4 79999999999999999


Q ss_pred             cCcee-EEEEEeC
Q 020435          314 KGKCL-RCVIWMG  325 (326)
Q Consensus       314 ~~~~~-k~vv~~~  325 (326)
                      +++.. |++|+++
T Consensus       312 ~~~~~gkvvv~~~  324 (324)
T 3nx4_A          312 NNQVQGRTLVKIK  324 (324)
T ss_dssp             TTCCCSEEEEECC
T ss_pred             hCCCCceEEEecC
Confidence            98875 9999875

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=5.8e-40  Score=301.16  Aligned_cols=260  Identities=20%  Similarity=0.226  Sum_probs=214.5

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|++|++|++||||++.+.                             .+              
T Consensus        83 ~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~~--------------  119 (357)
T 1zsy_A           83 ELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANA-----------------------------GL--------------  119 (357)
T ss_dssp             CSSEECCSCCEEEEEEECTTCCSCCTTCEEEESSS-----------------------------CS--------------
T ss_pred             CCCccccceEEEEEEEeCCCCCCCCCCCEEEEcCC-----------------------------CC--------------
Confidence            58999999999999999999999999999976421                             12              


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCC
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT  165 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~  165 (326)
                           |+|+||++++++.++++|+++|+++||++++.++|||+++.+.+++++|++|||+|+ |++|++++|+||..|+ 
T Consensus       120 -----G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-  193 (357)
T 1zsy_A          120 -----GTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-  193 (357)
T ss_dssp             -----CCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-
T ss_pred             -----ccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-
Confidence                 399999999999999999999999999999899999998888889999999999997 9999999999999999 


Q ss_pred             EEEEEcCChh----HHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC--CccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          166 RIIGVDVISE----KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       166 ~V~~~~~~~~----~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~--g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      ++++++.+.+    +.++++++|+++++++.+   . ..+.+.+.+.+  ++|+||||+|++. ...++++++++ |+++
T Consensus       194 ~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~---~-~~~~~~~~~~~~~~~Dvvid~~g~~~-~~~~~~~l~~~-G~iv  267 (357)
T 1zsy_A          194 RTINVVRDRPDIQKLSDRLKSLGAEHVITEEE---L-RRPEMKNFFKDMPQPRLALNCVGGKS-STELLRQLARG-GTMV  267 (357)
T ss_dssp             EEEEEECCCSCHHHHHHHHHHTTCSEEEEHHH---H-HSGGGGGTTSSSCCCSEEEESSCHHH-HHHHHTTSCTT-CEEE
T ss_pred             EEEEEecCccchHHHHHHHHhcCCcEEEecCc---c-hHHHHHHHHhCCCCceEEEECCCcHH-HHHHHHhhCCC-CEEE
Confidence            7777765432    467889999999998643   1 12345556554  6999999999887 56789999998 9999


Q ss_pred             EeccCCCCCcccccHHHHHhcCCEEEeeeccCCC-------CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHH
Q 020435          240 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK-------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL  312 (326)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~  312 (326)
                      .+|... .....++...++.|++++.+++...+.       .+++++++++++++|++++.  +.++|+++++++|++.+
T Consensus       268 ~~G~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~  344 (357)
T 1zsy_A          268 TYGGMA-KQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP--ACSQVPLQDYQSALEAS  344 (357)
T ss_dssp             ECCCCT-TCCBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCC--CEEEEEGGGHHHHHHHH
T ss_pred             EEecCC-CCCCCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCc--cceEEcHHHHHHHHHHH
Confidence            998643 334566767777889999998654210       12357889999999987765  55899999999999999


Q ss_pred             HcCcee-EEEEEe
Q 020435          313 IKGKCL-RCVIWM  324 (326)
Q Consensus       313 ~~~~~~-k~vv~~  324 (326)
                      .+++.. |+++++
T Consensus       345 ~~~~~~gKvvl~~  357 (357)
T 1zsy_A          345 MKPFISSKQILTM  357 (357)
T ss_dssp             TSSSCSSEEEEEC
T ss_pred             HhCCCCCcEEEeC
Confidence            887754 999874

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=3.9e-39  Score=296.06  Aligned_cols=262  Identities=21%  Similarity=0.212  Sum_probs=220.5

Q ss_pred             CCCCcccCCceeEEEEEecCCCC-CccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~-~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      ..+|.++|||++|+|+++|++|+ +|++||||++..                               +            
T Consensus        81 ~~~P~i~G~E~~G~V~~vG~~V~~~~~vGdrV~~~~-------------------------------~------------  117 (362)
T 2c0c_A           81 VKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMA-------------------------------P------------  117 (362)
T ss_dssp             CCSCEECCSEEEEEEEEECTTGGGTCCTTCEEEEEC-------------------------------S------------
T ss_pred             CCCCCCCCceeEEEEEEECCCccCCCCCCCEEEEcc-------------------------------C------------
Confidence            46899999999999999999999 999999997531                               2            


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcC
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCG  163 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g  163 (326)
                             |+|+||++++++.++++|+. + .++|+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|
T Consensus       118 -------G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G  188 (362)
T 2c0c_A          118 -------GSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAK  188 (362)
T ss_dssp             -------CCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTT
T ss_pred             -------CcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCC
Confidence                   39999999999999999996 3 4677788899999999888889999999999995 999999999999999


Q ss_pred             CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          164 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       164 ~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      + +|+++++++++.+.++++|+++++++.+   .++.+.+++.+++++|++|||+|... +..++++++++ |+++.+|.
T Consensus       189 a-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~g~  262 (362)
T 2c0c_A          189 C-HVIGTCSSDEKSAFLKSLGCDRPINYKT---EPVGTVLKQEYPEGVDVVYESVGGAM-FDLAVDALATK-GRLIVIGF  262 (362)
T ss_dssp             C-EEEEEESSHHHHHHHHHTTCSEEEETTT---SCHHHHHHHHCTTCEEEEEECSCTHH-HHHHHHHEEEE-EEEEECCC
T ss_pred             C-EEEEEECCHHHHHHHHHcCCcEEEecCC---hhHHHHHHHhcCCCCCEEEECCCHHH-HHHHHHHHhcC-CEEEEEeC
Confidence            9 9999999999999999999999999887   78888888877559999999999865 89999999998 99999986


Q ss_pred             CCCCCc---------ccccHHHHHhcCCEEEeeeccCCC--CCCCHHHHHHHHhCCCCCCCcc------eeeeeccccHH
Q 020435          244 DQPGSQ---------LSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKF------VTHEMKFEEIN  306 (326)
Q Consensus       244 ~~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~------i~~~~~l~~i~  306 (326)
                      ......         ..+ ...++.+++++.+++...+.  ..++++++++++++|++++...      +++.+++++++
T Consensus       263 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~  341 (362)
T 2c0c_A          263 ISGYQTPTGLSPVKAGTL-PAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIF  341 (362)
T ss_dssp             GGGTTSSSCCCCCCCTTH-HHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHH
T ss_pred             CCCcCccccccccccccc-HHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHH
Confidence            432110         022 24567789999998754332  1346889999999998876533      33568999999


Q ss_pred             HHHHHHHcCce-eEEEEEeCC
Q 020435          307 SAFDLLIKGKC-LRCVIWMGE  326 (326)
Q Consensus       307 ~a~~~~~~~~~-~k~vv~~~~  326 (326)
                      +|++.+.+++. +|+++++++
T Consensus       342 ~A~~~~~~~~~~gKvvv~~~~  362 (362)
T 2c0c_A          342 RAVNYMYMGKNTGKIVVELPH  362 (362)
T ss_dssp             HHHHHHHTTCCSBEEEEECCC
T ss_pred             HHHHHHHcCCCCceEEEEcCC
Confidence            99999988765 499998864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.7e-38  Score=289.12  Aligned_cols=256  Identities=19%  Similarity=0.217  Sum_probs=220.2

Q ss_pred             CCCcccCCc----eeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCC
Q 020435            7 VFPRILGHE----AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG   82 (326)
Q Consensus         7 ~~p~i~G~e----~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~   82 (326)
                      .+|.++|||    ++|+|++.  +|++|++||||++.                                           
T Consensus        65 ~~p~~~G~e~g~~~~G~V~~~--~v~~~~vGdrV~~~-------------------------------------------   99 (336)
T 4b7c_A           65 IPPVGIGEVMRALGVGKVLVS--KHPGFQAGDYVNGA-------------------------------------------   99 (336)
T ss_dssp             SCCCCTTSBCCCEEEEEEEEE--CSTTCCTTCEEEEE-------------------------------------------
T ss_pred             CCCCCCCcccCCceEEEEEec--CCCCCCCCCEEecc-------------------------------------------
Confidence            457777777    79999994  58899999999652                                           


Q ss_pred             cccccccccccccceEEecccceEEcCCCCCcccc--ccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHH
Q 020435           83 ETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA--CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGA  159 (326)
Q Consensus        83 ~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~a--a~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la  159 (326)
                               |+|+||++++++.++++|+++++.++  ++++++++|||+++.+.+++++|++|||+|+ |++|++++|++
T Consensus       100 ---------G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a  170 (336)
T 4b7c_A          100 ---------LGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIA  170 (336)
T ss_dssp             ---------CCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHH
T ss_pred             ---------CCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence                     38999999999999999999988887  7889999999999889999999999999998 99999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHH-HhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEE
Q 020435          160 RLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT  238 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~  238 (326)
                      +..|+ +|+++++++++.+.+ +++|+++++++.+   .++.+.+++.+++++|++|||+|... +..++++++++ |++
T Consensus       171 ~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~i  244 (336)
T 4b7c_A          171 RLKGC-RVVGIAGGAEKCRFLVEELGFDGAIDYKN---EDLAAGLKRECPKGIDVFFDNVGGEI-LDTVLTRIAFK-ARI  244 (336)
T ss_dssp             HHTTC-EEEEEESSHHHHHHHHHTTCCSEEEETTT---SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEE-EEE
T ss_pred             HHCCC-EEEEEeCCHHHHHHHHHHcCCCEEEECCC---HHHHHHHHHhcCCCceEEEECCCcch-HHHHHHHHhhC-CEE
Confidence            99999 999999999999998 8999999999888   88999999998669999999999865 99999999998 999


Q ss_pred             EEeccCCC-----CCcccccHHHHHhcCCEEEeeeccCCC--CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHH
Q 020435          239 IVLGVDQP-----GSQLSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL  311 (326)
Q Consensus       239 v~~g~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~  311 (326)
                      +.+|....     .....++...++.+++++.+++.....  ..++++++++++++|++++.  +..+++++++++|++.
T Consensus       245 v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~  322 (336)
T 4b7c_A          245 VLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSR--EDIVEGLETFPETLLK  322 (336)
T ss_dssp             EECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCC--EEEEECGGGHHHHHHH
T ss_pred             EEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccc--eeeecCHHHHHHHHHH
Confidence            99987541     112355666778889999998765432  12568899999999988776  4456899999999999


Q ss_pred             HHcCcee-EEEEEe
Q 020435          312 LIKGKCL-RCVIWM  324 (326)
Q Consensus       312 ~~~~~~~-k~vv~~  324 (326)
                      +.+++.. |+||++
T Consensus       323 ~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          323 LFSGENFGKLVLKV  336 (336)
T ss_dssp             HHTTCCCSEEEEEC
T ss_pred             HHcCCCCceEEEeC
Confidence            9998775 999974

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=4.2e-38  Score=290.62  Aligned_cols=260  Identities=18%  Similarity=0.220  Sum_probs=209.8

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      .+|.++|||++|+|+++|++|++|++||||++.+                           +...+|             
T Consensus        93 ~~P~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~---------------------------~~~~~G-------------  132 (375)
T 2vn8_A           93 EFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAV---------------------------PPWKQG-------------  132 (375)
T ss_dssp             TCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEEC---------------------------CTTSCC-------------
T ss_pred             cCCcccceeeeEEEEEeCCCCCCCCCCCEEEEec---------------------------CCCCCc-------------
Confidence            3899999999999999999999999999997642                           111234             


Q ss_pred             cccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcc----cCCCCEEEEEcc-CHHHHHHHHHHHH
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN----VEVGSTVVIFGL-GSIGLAVAEGARL  161 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~----~~~~~~vlI~Ga-g~~G~~a~~la~~  161 (326)
                            +|+||++++++.++++|+++|+++||+++++++|||+++.+.++    +++|++|||+|+ |++|++++|+|+.
T Consensus       133 ------~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~  206 (375)
T 2vn8_A          133 ------TLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKA  206 (375)
T ss_dssp             ------SSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHH
T ss_pred             ------cceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHh
Confidence                  99999999999999999999999999999899999998877888    999999999995 9999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH-HHHHHHHHHhhcCCcEEEE
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~  240 (326)
                      .|+ +|++++ ++++.++++++|+++++++.+   .++.+.+++.  +++|++|||+|.+ ..+..++++++++ |+++.
T Consensus       207 ~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~~~~---~~~~~~~~~~--~g~D~vid~~g~~~~~~~~~~~~l~~~-G~iv~  278 (375)
T 2vn8_A          207 WDA-HVTAVC-SQDASELVRKLGADDVIDYKS---GSVEEQLKSL--KPFDFILDNVGGSTETWAPDFLKKWSG-ATYVT  278 (375)
T ss_dssp             TTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS---SCHHHHHHTS--CCBSEEEESSCTTHHHHGGGGBCSSSC-CEEEE
T ss_pred             CCC-EEEEEe-ChHHHHHHHHcCCCEEEECCc---hHHHHHHhhc--CCCCEEEECCCChhhhhHHHHHhhcCC-cEEEE
Confidence            999 899998 678899999999999999887   7777777653  3899999999998 4468889999998 99999


Q ss_pred             eccCCCCCccc--ccH------HHHHh-------cCCEEEeeeccCCCCCCCHHHHHHHHhCCCCCCCcceeeeeccccH
Q 020435          241 LGVDQPGSQLS--LSS------FEVLH-------SGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI  305 (326)
Q Consensus       241 ~g~~~~~~~~~--~~~------~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i  305 (326)
                      +|.........  +..      ..++.       +...+...+.  ....++++++++++++|+++  ++++++|+++++
T Consensus       279 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~  354 (375)
T 2vn8_A          279 LVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFF--MASGPCLDDIAELVDAGKIR--PVIEQTFPFSKV  354 (375)
T ss_dssp             SCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCC--CCCHHHHHHHHHHHHTTSCC--CCEEEEEEGGGH
T ss_pred             eCCCcccccccccccchhheeehhhccccccccccCcceEEEEe--CCCHHHHHHHHHHHHCCCcc--cCcCeEECHHHH
Confidence            98632110000  100      11222       2334433221  11234679999999999764  568899999999


Q ss_pred             HHHHHHHHcCcee-EEEEEe
Q 020435          306 NSAFDLLIKGKCL-RCVIWM  324 (326)
Q Consensus       306 ~~a~~~~~~~~~~-k~vv~~  324 (326)
                      ++|++.+.+++.. |+++++
T Consensus       355 ~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          355 PEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             HHHHHHHHHCCCSSEEEEEC
T ss_pred             HHHHHHHHcCCCCCeEEEEe
Confidence            9999999887654 999976

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=9.8e-39  Score=289.98  Aligned_cols=264  Identities=18%  Similarity=0.222  Sum_probs=210.2

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++  ++++|++||||++.+.                        ..|...+|            
T Consensus        59 ~~~p~i~G~E~~G~V~~~--~v~~~~vGdrV~~~~~------------------------~~g~~~~G------------  100 (330)
T 1tt7_A           59 REYPLILGIDAAGTVVSS--NDPRFAEGDEVIATSY------------------------ELGVSRDG------------  100 (330)
T ss_dssp             SSCSEECCSEEEEEEEEC--SSTTCCTTCEEEEEST------------------------TBTTTBCC------------
T ss_pred             CCCCccccceEEEEEEEc--CCCCCCCCCEEEEccc------------------------ccCCCCCc------------
Confidence            368999999999999996  4688999999986421                        02333344            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhh--hhcccCCCC-EEEEEcc-CHHHHHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARL  161 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~--~~~~~~~~~-~vlI~Ga-g~~G~~a~~la~~  161 (326)
                             +|+||++++++.++++|+++|+++||++++.+.|||.++.  +.+++++++ +|||+|+ |++|++++|+|+.
T Consensus       101 -------~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~  173 (330)
T 1tt7_A          101 -------GLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNK  173 (330)
T ss_dssp             -------SSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHH
T ss_pred             -------cceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHH
Confidence                   9999999999999999999999999999999999998764  446788886 9999997 9999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .|+ +|++++++++++++++++|+++++++.+   .+ .+.+++.+++++|++|||+|++. +..++++++++ |+++.+
T Consensus       174 ~Ga-~vi~~~~~~~~~~~~~~lGa~~v~~~~~---~~-~~~~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~iv~~  246 (330)
T 1tt7_A          174 RGY-DVVASTGNREAADYLKQLGASEVISRED---VY-DGTLKALSKQQWQGAVDPVGGKQ-LASLLSKIQYG-GSVAVS  246 (330)
T ss_dssp             HTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH---HC-SSCCCSSCCCCEEEEEESCCTHH-HHHHHTTEEEE-EEEEEC
T ss_pred             CCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC---ch-HHHHHHhhcCCccEEEECCcHHH-HHHHHHhhcCC-CEEEEE
Confidence            999 8999999999999999999999997643   21 11233344448999999999965 99999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCC---CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      |... .....++...++.|++++.+++......   .+.++.+++++++|++  +++++++|+++++++|++.+.+++..
T Consensus       247 G~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~  323 (330)
T 1tt7_A          247 GLTG-GGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQL--LTIVDREVSLEETPGALKDILQNRIQ  323 (330)
T ss_dssp             CCSS-CSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCCSCS--TTSEEEEECSTTHHHHHHHTTTTCCS
T ss_pred             ecCC-CCccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhcCCc--ccccceEEcHHHHHHHHHHHHcCCCC
Confidence            9753 2344566666778899999984322110   1235556667777865  45678999999999999999887654


Q ss_pred             -EEEEEe
Q 020435          319 -RCVIWM  324 (326)
Q Consensus       319 -k~vv~~  324 (326)
                       |++|++
T Consensus       324 gKvvi~~  330 (330)
T 1tt7_A          324 GRVIVKL  330 (330)
T ss_dssp             SEEEECC
T ss_pred             CeEEEeC
Confidence             999864

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.4e-38  Score=284.87  Aligned_cols=263  Identities=17%  Similarity=0.197  Sum_probs=206.5

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+++  ++++|++||||++.+.                        ..|...+|            
T Consensus        58 ~~~p~v~G~E~~G~V~~~--~v~~~~vGdrV~~~~~------------------------~~g~~~~G------------   99 (328)
T 1xa0_A           58 KTYPFVPGIDLAGVVVSS--QHPRFREGDEVIATGY------------------------EIGVTHFG------------   99 (328)
T ss_dssp             CSSSBCCCSEEEEEEEEC--CSSSCCTTCEEEEEST------------------------TBTTTBCC------------
T ss_pred             CCCCcccCcceEEEEEec--CCCCCCCCCEEEEccc------------------------cCCCCCCc------------
Confidence            468999999999999996  5689999999986421                        02333344            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhh--hhcccCCCC-EEEEEcc-CHHHHHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARL  161 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~--~~~~~~~~~-~vlI~Ga-g~~G~~a~~la~~  161 (326)
                             +|+||++++++.++++|+++|+++||++++.+.|||.++.  +.+++++++ +|||+|+ |++|++++|+|+.
T Consensus       100 -------~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~  172 (328)
T 1xa0_A          100 -------GYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAK  172 (328)
T ss_dssp             -------SSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHH
T ss_pred             -------cceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHH
Confidence                   9999999999999999999999999999999999998764  446788886 9999997 9999999999999


Q ss_pred             cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          162 CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       162 ~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .|+ +|++++++++++++++++|+++++++.+   .+ .+.+++.+++++|++|||+|+.. +..++++++++ |+++.+
T Consensus       173 ~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~---~~-~~~~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~  245 (328)
T 1xa0_A          173 RGY-TVEASTGKAAEHDYLRVLGAKEVLARED---VM-AERIRPLDKQRWAAAVDPVGGRT-LATVLSRMRYG-GAVAVS  245 (328)
T ss_dssp             TTC-CEEEEESCTTCHHHHHHTTCSEEEECC-------------CCSCCEEEEEECSTTTT-HHHHHHTEEEE-EEEEEC
T ss_pred             CCC-EEEEEECCHHHHHHHHHcCCcEEEecCC---cH-HHHHHHhcCCcccEEEECCcHHH-HHHHHHhhccC-CEEEEE
Confidence            999 8999999999999999999999998776   33 34455555559999999999975 89999999998 999999


Q ss_pred             ccCCCCCcccccHHHHHhcCCEEEeeeccCCCC---CCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee
Q 020435          242 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL  318 (326)
Q Consensus       242 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~  318 (326)
                      |... .....++...++.|++++.++.......   .+.++.++++++++ ++  + ++++|+++++++|++.+.+++..
T Consensus       246 G~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-l~--~-~~~~~~l~~~~~A~~~~~~~~~~  320 (328)
T 1xa0_A          246 GLTG-GAEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-LE--R-IAQEISLAELPQALKRILRGELR  320 (328)
T ss_dssp             SCCS-SSCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-HH--H-HEEEEEGGGHHHHHHHHHHTCCC
T ss_pred             eecC-CCCCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHcC-Cc--e-eeeEeCHHHHHHHHHHHHcCCCC
Confidence            8753 2234555566777899999874221110   12345566666666 43  3 35999999999999999887754


Q ss_pred             -EEEEEeC
Q 020435          319 -RCVIWMG  325 (326)
Q Consensus       319 -k~vv~~~  325 (326)
                       |++|+++
T Consensus       321 gKvvv~~~  328 (328)
T 1xa0_A          321 GRTVVRLA  328 (328)
T ss_dssp             SEEEEECC
T ss_pred             CeEEEEeC
Confidence             9999864

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=5.2e-39  Score=296.94  Aligned_cols=259  Identities=14%  Similarity=0.151  Sum_probs=211.4

Q ss_pred             CCCCcccCCceeEEEEEecCCC-CCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            6 AVFPRILGHEAIGVVESVGENV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v-~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      ..+|+++|||++|+|+++|++| ++|++||||++.+                               +            
T Consensus        88 ~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~-------------------------------~------------  124 (379)
T 3iup_A           88 LDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG-------------------------------G------------  124 (379)
T ss_dssp             TTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-------------------------------S------------
T ss_pred             cCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-------------------------------C------------
Confidence            4689999999999999999999 8999999997632                               2            


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEE--ccCHHHHHHHHHHHHc
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGARLC  162 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~--Gag~~G~~a~~la~~~  162 (326)
                             |+|+||++++++.++++|+++|+++||++++..+|||++ ++... ++|++|||+  |+|++|++++|+||+.
T Consensus       125 -------G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~-~~~~~-~~g~~vlV~gag~G~vG~~a~q~a~~~  195 (379)
T 3iup_A          125 -------AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGM-VETMR-LEGHSALVHTAAASNLGQMLNQICLKD  195 (379)
T ss_dssp             -------CCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHH-HHHHH-HTTCSCEEESSTTSHHHHHHHHHHHHH
T ss_pred             -------CcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHH-HHHhc-cCCCEEEEECCCCCHHHHHHHHHHHHC
Confidence                   399999999999999999999999999999999999975 45555 899999999  4599999999999999


Q ss_pred             CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhh-----cC--
Q 020435          163 GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCR-----KG--  234 (326)
Q Consensus       163 g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~-----~~--  234 (326)
                      |+ +|+++++++++.++++++|+++++++.+   .++.+.+++.+++ ++|+||||+|++.....++++++     ++  
T Consensus       196 Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~---~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~  271 (379)
T 3iup_A          196 GI-KLVNIVRKQEQADLLKAQGAVHVCNAAS---PTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSARE  271 (379)
T ss_dssp             TC-CEEEEESSHHHHHHHHHTTCSCEEETTS---TTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCS
T ss_pred             CC-EEEEEECCHHHHHHHHhCCCcEEEeCCC---hHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccc
Confidence            99 8999999999999999999999999988   8899999999988 99999999999876788888885     43  


Q ss_pred             --------CcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCCC---CCCC----HHHHHHHHhCCCCCCCcceeee
Q 020435          235 --------WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK---AKSD----IPILLKRYMDKELELDKFVTHE  299 (326)
Q Consensus       235 --------~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~----~~~~~~l~~~g~~~~~~~i~~~  299 (326)
                              .|+++.+|...   ...++...++.+++++.+++.+.+.   ..++    ++.+++++.++   ++++++++
T Consensus       272 ~~~~G~~~~g~iv~~G~~~---~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~i~~~  345 (379)
T 3iup_A          272 YSRYGSTTHKQVYLYGGLD---TSPTEFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKTT---FASHYSKE  345 (379)
T ss_dssp             CCTTCCCSCEEEEECCCSE---EEEEEECCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTTT---TCCCCSEE
T ss_pred             eeecccccCceEEEecCCC---CCccccccccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhcc---CCCcceEE
Confidence                    04555554421   1122233445678899988654331   1122    35556666662   55668899


Q ss_pred             eccccH--HHHHHHHHcCcee-EEEEEeCC
Q 020435          300 MKFEEI--NSAFDLLIKGKCL-RCVIWMGE  326 (326)
Q Consensus       300 ~~l~~i--~~a~~~~~~~~~~-k~vv~~~~  326 (326)
                      |+++++  ++|++.+.+++.. |+||++++
T Consensus       346 ~~l~~~~~~~A~~~l~~~~~~gKvVv~~~~  375 (379)
T 3iup_A          346 ISLAEVLDLDMIAVYNKRATGEKYLINPNK  375 (379)
T ss_dssp             EEHHHHTCHHHHHHHTTCCTTCCEEEETTT
T ss_pred             ecHHHhhhHHHHHHHhcCCCCceEEEeCCC
Confidence            999999  9999999988665 99999863

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=7e-37  Score=280.70  Aligned_cols=261  Identities=18%  Similarity=0.253  Sum_probs=219.3

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      +..+|.++|||++|+|++  ++|++|++||||++..                                            
T Consensus        73 ~~~~p~v~G~E~~G~V~~--~~v~~~~vGdrV~~~~--------------------------------------------  106 (357)
T 2zb4_A           73 PWQLSQVVDGGGIGIIEE--SKHTNLTKGDFVTSFY--------------------------------------------  106 (357)
T ss_dssp             CCCBTSBCEEEEEEEEEE--ECSTTCCTTCEEEEEE--------------------------------------------
T ss_pred             CCCCCccccccEEEEEEe--cCCCCCCCCCEEEecC--------------------------------------------
Confidence            346899999999999999  8899999999997531                                            


Q ss_pred             cccccccccccceEEecccceEEcCCCC-----CccccccccchhhhhhhhhhhhcccCCC--CEEEEEcc-CHHHHHHH
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTV-----PPNRACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVA  156 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~-----s~~~aa~l~~~~~ta~~~l~~~~~~~~~--~~vlI~Ga-g~~G~~a~  156 (326)
                             |+|+||++++++.++++|+++     +++ +++++++++|||+++.+.++++++  ++|||+|+ |++|++++
T Consensus       107 -------G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~  178 (357)
T 2zb4_A          107 -------WPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAG  178 (357)
T ss_dssp             -------EESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHH
T ss_pred             -------CCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHH
Confidence                   389999999999999999999     555 778888999999998888999999  99999997 99999999


Q ss_pred             HHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCC
Q 020435          157 EGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW  235 (326)
Q Consensus       157 ~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~  235 (326)
                      |+++..|+.+|+++++++++.+.+++ +|++++++..+   .++.+.+.+.+++++|++|||+|... +..++++++++ 
T Consensus       179 ~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~~~~~~~~~~~~d~vi~~~G~~~-~~~~~~~l~~~-  253 (357)
T 2zb4_A          179 QIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK---DNVAEQLRESCPAGVDVYFDNVGGNI-SDTVISQMNEN-  253 (357)
T ss_dssp             HHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTT---SCHHHHHHHHCTTCEEEEEESCCHHH-HHHHHHTEEEE-
T ss_pred             HHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCc---hHHHHHHHHhcCCCCCEEEECCCHHH-HHHHHHHhccC-
Confidence            99999998789999999999998886 99999999887   78888888888669999999999855 89999999998 


Q ss_pred             cEEEEeccCCCC-Cccccc-------HHHHHhcCCEEEeeeccCCC--CCCCHHHHHHHHhCCCCCCCcceeeeeccccH
Q 020435          236 GKTIVLGVDQPG-SQLSLS-------SFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEI  305 (326)
Q Consensus       236 G~~v~~g~~~~~-~~~~~~-------~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i  305 (326)
                      |+++.+|..... ...++.       ...++.+++++.++....+.  ..++++++++++++|++++.  +..+|+++++
T Consensus       254 G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~  331 (357)
T 2zb4_A          254 SHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIK--ETVINGLENM  331 (357)
T ss_dssp             EEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCC--EEEEECGGGH
T ss_pred             cEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCc--cceecCHHHH
Confidence            999999874321 122221       14567789999998653321  13468899999999988776  3356999999


Q ss_pred             HHHHHHHHcCce-eEEEEEeCC
Q 020435          306 NSAFDLLIKGKC-LRCVIWMGE  326 (326)
Q Consensus       306 ~~a~~~~~~~~~-~k~vv~~~~  326 (326)
                      ++|++.+.+++. +|+++++++
T Consensus       332 ~~A~~~~~~~~~~gKvvi~~~~  353 (357)
T 2zb4_A          332 GAAFQSMMTGGNIGKQIVCISE  353 (357)
T ss_dssp             HHHHHHHHTTCCSBEEEEECCC
T ss_pred             HHHHHHHHcCCCCceEEEEEec
Confidence            999999998875 499998863

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=6e-38  Score=313.25  Aligned_cols=255  Identities=19%  Similarity=0.237  Sum_probs=216.1

Q ss_pred             CCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccccc
Q 020435            8 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHH   87 (326)
Q Consensus         8 ~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~   87 (326)
                      .|.++|||++|+|+++|++|++|++||||+...                               +               
T Consensus       264 ~~~~lG~E~aG~V~~vG~~V~~~~vGDrV~~~~-------------------------------~---------------  297 (795)
T 3slk_A          264 GVASLGSEGAGVVVETGPGVTGLAPGDRVMGMI-------------------------------P---------------  297 (795)
T ss_dssp             SCCCSCCCEEEEEEEECSSCCSSCTTCEEEECC-------------------------------S---------------
T ss_pred             CCccccceeEEEEEEeCCCCCcCCCCCEEEEEe-------------------------------c---------------
Confidence            466899999999999999999999999996531                               2               


Q ss_pred             ccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCE
Q 020435           88 FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATR  166 (326)
Q Consensus        88 ~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~  166 (326)
                          |+|+||++++++.++++|+++|+++||++++.++|||+++.+.+++++|++|||+|+ |++|++++|+||+.|+ +
T Consensus       298 ----G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~  372 (795)
T 3slk_A          298 ----KAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-E  372 (795)
T ss_dssp             ----SCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-C
T ss_pred             ----CCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-E
Confidence                399999999999999999999999999999999999999889999999999999996 9999999999999999 8


Q ss_pred             EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          167 IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       167 V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+++++++ +.+.++ +|+++++++.+   .++.+.+++.+++ |+|+||||.++.. +..++++++++ |+++.+|...
T Consensus       373 V~~t~~~~-k~~~l~-lga~~v~~~~~---~~~~~~i~~~t~g~GvDvVld~~gg~~-~~~~l~~l~~~-Gr~v~iG~~~  445 (795)
T 3slk_A          373 VYATASED-KWQAVE-LSREHLASSRT---CDFEQQFLGATGGRGVDVVLNSLAGEF-ADASLRMLPRG-GRFLELGKTD  445 (795)
T ss_dssp             EEEECCGG-GGGGSC-SCGGGEECSSS---STHHHHHHHHSCSSCCSEEEECCCTTT-THHHHTSCTTC-EEEEECCSTT
T ss_pred             EEEEeChH-Hhhhhh-cChhheeecCC---hhHHHHHHHHcCCCCeEEEEECCCcHH-HHHHHHHhcCC-CEEEEecccc
Confidence            99999655 666666 99999999988   8999999999999 9999999999877 89999999998 9999998754


Q ss_pred             CCCcccccHHHHHhcCCEEEeeeccCCC---CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-EEE
Q 020435          246 PGSQLSLSSFEVLHSGKILMGSLFGGLK---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCV  321 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k~v  321 (326)
                      ......+.   ...+++++.+.......   ..+.++++++++++|++++  +++++|+++++++||+.+++++.. |+|
T Consensus       446 ~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~p--~~~~~~~l~~~~eA~~~l~~g~~~GKvV  520 (795)
T 3slk_A          446 VRDPVEVA---DAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVLEP--LPVTAWDVRQAPEALRHLSQARHVGKLV  520 (795)
T ss_dssp             CCCHHHHH---HHSSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSCCC--CCEEEEEGGGHHHHHHHHHHTCCCBEEE
T ss_pred             ccCccccc---ccCCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCcCC--CcceeEcHHHHHHHHHHHhcCCccceEE
Confidence            32222211   12356776665432110   1245888999999997654  577999999999999999998876 999


Q ss_pred             EEeC
Q 020435          322 IWMG  325 (326)
Q Consensus       322 v~~~  325 (326)
                      |++.
T Consensus       521 l~~~  524 (795)
T 3slk_A          521 LTMP  524 (795)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9875

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=5.4e-36  Score=273.53  Aligned_cols=260  Identities=17%  Similarity=0.215  Sum_probs=216.2

Q ss_pred             CCCcccCCceeEEEEE--ecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            7 VFPRILGHEAIGVVES--VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~--~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      .+|+++|||++|+|++  +|+++++|++||||+..                                             
T Consensus        69 ~~p~v~G~e~~G~~~~GvV~~~v~~~~vGdrV~~~---------------------------------------------  103 (345)
T 2j3h_A           69 AQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGI---------------------------------------------  103 (345)
T ss_dssp             -CCCCTTSBCEEEEEEEEEEECSTTCCTTCEEEEE---------------------------------------------
T ss_pred             CCCcCCCCeeecceEEEEEecCCCCCCCCCEEEee---------------------------------------------
Confidence            4789999999999999  99999999999999642                                             


Q ss_pred             cccccccccccceEEecccc--eEEcCC---CCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHH
Q 020435           85 IHHFVSVSSFSEYTVLDIAH--VVKVDP---TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEG  158 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~--~~~ip~---~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~l  158 (326)
                             |+|+||+.+++..  ++++|+   +++++ +|+++++++|||+++.+.+++++|++|||+|+ |++|++++|+
T Consensus       104 -------g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~  175 (345)
T 2j3h_A          104 -------VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQL  175 (345)
T ss_dssp             -------EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHH
T ss_pred             -------cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHH
Confidence                   3899999998876  999996   35555 67888899999999878899999999999997 9999999999


Q ss_pred             HHHcCCCEEEEEcCChhHHHHHH-hcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcE
Q 020435          159 ARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK  237 (326)
Q Consensus       159 a~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~  237 (326)
                      ++..|+ +|+++++++++.+.++ ++|+++++|+.+  ..++.+.+++.+++++|++|||+|... +..++++++++ |+
T Consensus       176 a~~~G~-~V~~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~  250 (345)
T 2j3h_A          176 AKMMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE--ESDLTAALKRCFPNGIDIYFENVGGKM-LDAVLVNMNMH-GR  250 (345)
T ss_dssp             HHHTTC-EEEEEESSHHHHHHHHHTSCCSEEEETTS--CSCSHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEE-EE
T ss_pred             HHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEecCC--HHHHHHHHHHHhCCCCcEEEECCCHHH-HHHHHHHHhcC-CE
Confidence            999999 9999999999999998 799999998765  236777888877559999999999864 89999999998 99


Q ss_pred             EEEeccCCCC----CcccccHHHHHhcCCEEEeeeccCCC--CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHH
Q 020435          238 TIVLGVDQPG----SQLSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL  311 (326)
Q Consensus       238 ~v~~g~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~  311 (326)
                      ++.+|.....    ....++...++.+++++.++......  ..+.++++++++++|+++  +++...|+++++++|++.
T Consensus       251 ~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~--~~~~~~~~l~~~~~A~~~  328 (345)
T 2j3h_A          251 IAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKIT--YVEDVADGLEKAPEALVG  328 (345)
T ss_dssp             EEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSC--CCEEEEESGGGSHHHHHH
T ss_pred             EEEEccccccccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCc--CcccccCCHHHHHHHHHH
Confidence            9999864321    12345556677789999987644321  012388899999999776  346668999999999999


Q ss_pred             HHcCcee-EEEEEeCC
Q 020435          312 LIKGKCL-RCVIWMGE  326 (326)
Q Consensus       312 ~~~~~~~-k~vv~~~~  326 (326)
                      +.+++.. |+++.+++
T Consensus       329 ~~~~~~~gKvvv~~~~  344 (345)
T 2j3h_A          329 LFHGKNVGKQVVVVAR  344 (345)
T ss_dssp             HHTTCCSSEEEEESSC
T ss_pred             HHcCCCceEEEEEeCC
Confidence            9988765 99998863

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=2.5e-35  Score=267.81  Aligned_cols=258  Identities=17%  Similarity=0.205  Sum_probs=213.6

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|++.  ++++|++||||++.                                              
T Consensus        61 ~~~p~~~g~e~~G~Vv~~--~v~~~~vGdrV~~~----------------------------------------------   92 (333)
T 1v3u_A           61 LKEGAVMMGQQVARVVES--KNSAFPAGSIVLAQ----------------------------------------------   92 (333)
T ss_dssp             CCTTSBCCCCEEEEEEEE--SCTTSCTTCEEEEC----------------------------------------------
T ss_pred             CCCCcccccceEEEEEec--CCCCCCCCCEEEec----------------------------------------------
Confidence            467899999999999995  57899999999652                                              


Q ss_pred             ccccccccccceEEecccceEEcCCC----CCccc-cccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPT----VPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGA  159 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~----~s~~~-aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la  159 (326)
                            |+|+||++++++.++++|++    +++++ +++++++++|||+++.+.++++++++|||+|+ |++|++++|++
T Consensus        93 ------g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~  166 (333)
T 1v3u_A           93 ------SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIA  166 (333)
T ss_dssp             ------CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHH
T ss_pred             ------CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHH
Confidence                  38999999999999999997    88887 48889999999999878899999999999997 99999999999


Q ss_pred             HHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEE
Q 020435          160 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       160 ~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v  239 (326)
                      +..|+ +|+++++++++.+.++++|+++++|..+  ..++.+.+.+.+++++|++|||+|.+. +..++++++++ |+++
T Consensus       167 ~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v  241 (333)
T 1v3u_A          167 KLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT--VNSLEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDF-GKIA  241 (333)
T ss_dssp             HHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--CSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEE-EEEE
T ss_pred             HHCCC-EEEEEeCCHHHHHHHHhcCCcEEEecCC--HHHHHHHHHHHhCCCCeEEEECCChHH-HHHHHHHHhcC-CEEE
Confidence            99999 9999999999999999999998888653  246777888877668999999999876 89999999998 9999


Q ss_pred             EeccCCCCC----c-ccccHHHHHhcCCEEEeeeccCCC---CCCCHHHHHHHHhCCCCCCCcceeeeeccccHHHHHHH
Q 020435          240 VLGVDQPGS----Q-LSLSSFEVLHSGKILMGSLFGGLK---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL  311 (326)
Q Consensus       240 ~~g~~~~~~----~-~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~i~~a~~~  311 (326)
                      .+|......    . ...+...++.+++++.++....+.   ..++++++++++++|++++...  ..++++++++|++.
T Consensus       242 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~--~~~~l~~~~~A~~~  319 (333)
T 1v3u_A          242 ICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEH--VTKGFENMPAAFIE  319 (333)
T ss_dssp             ECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCEE--EEECGGGHHHHHHH
T ss_pred             EEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCccc--cccCHHHHHHHHHH
Confidence            998753211    1 123556677889999998654321   1245778999999998877643  45799999999999


Q ss_pred             HHcCcee-EEEEEe
Q 020435          312 LIKGKCL-RCVIWM  324 (326)
Q Consensus       312 ~~~~~~~-k~vv~~  324 (326)
                      +.+++.. |+++++
T Consensus       320 ~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          320 MLNGANLGKAVVTA  333 (333)
T ss_dssp             HHTTCCSBEEEEEC
T ss_pred             HHcCCCCceEEEeC
Confidence            9887654 999864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=7.2e-36  Score=267.80  Aligned_cols=244  Identities=20%  Similarity=0.302  Sum_probs=200.4

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|||++|+|+           ||||+..+                              .+|            
T Consensus        53 ~~~p~i~G~e~~G~V~-----------GdrV~~~~------------------------------~~G------------   79 (302)
T 1iz0_A           53 LHPPFIPGMEVVGVVE-----------GRRYAALV------------------------------PQG------------   79 (302)
T ss_dssp             CCSSBCCCCEEEEEET-----------TEEEEEEC------------------------------SSC------------
T ss_pred             CCCCCcccceEEEEEE-----------CcEEEEec------------------------------CCc------------
Confidence            4689999999999998           99996532                              223            


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA  164 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~  164 (326)
                             +|+||++++++.++++|+++|+++||+++++++|||+++.+.+ +++|++|||+|+ |++|++++|+|+..|+
T Consensus        80 -------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga  151 (302)
T 1iz0_A           80 -------GLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL  151 (302)
T ss_dssp             -------CSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC
T ss_pred             -------ceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence                   9999999999999999999999999999999999999987777 999999999997 9999999999999999


Q ss_pred             CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          165 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       165 ~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       +|+++++++++.+.++++|+++++++.+  ..++.+.+     +++|++|| +|... +..++++++++ |+++.+|..
T Consensus       152 -~Vi~~~~~~~~~~~~~~~ga~~~~~~~~--~~~~~~~~-----~~~d~vid-~g~~~-~~~~~~~l~~~-G~~v~~g~~  220 (302)
T 1iz0_A          152 -RVLAAASRPEKLALPLALGAEEAATYAE--VPERAKAW-----GGLDLVLE-VRGKE-VEESLGLLAHG-GRLVYIGAA  220 (302)
T ss_dssp             -EEEEEESSGGGSHHHHHTTCSEEEEGGG--HHHHHHHT-----TSEEEEEE-CSCTT-HHHHHTTEEEE-EEEEEC---
T ss_pred             -EEEEEeCCHHHHHHHHhcCCCEEEECCc--chhHHHHh-----cCceEEEE-CCHHH-HHHHHHhhccC-CEEEEEeCC
Confidence             9999999999999999999999987642  02333333     48999999 99855 89999999998 999999875


Q ss_pred             CCCCcccccHHHHHhcCCEEEeeeccCC-CCCCCHHHHHH---HHhCCCCCCCcceeeeeccccHHHHHHHHHcCcee-E
Q 020435          245 QPGSQLSLSSFEVLHSGKILMGSLFGGL-KAKSDIPILLK---RYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-R  319 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~---l~~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k  319 (326)
                      .. ....++...++.+++++.++..+.. ..+++++++++   ++++|+++  +.++++|+++++++|++.+.+++.. |
T Consensus       221 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gK  297 (302)
T 1iz0_A          221 EG-EVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELR--PVVGPVFPFAEAEAAFRALLDRGHTGK  297 (302)
T ss_dssp             -----CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTTTBC--CCEEEEEEGGGHHHHHHHTTCTTCCBE
T ss_pred             CC-CCCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcCCcc--cccceEEcHHHHHHHHHHHHcCCCCce
Confidence            32 2234555667788999999865421 12356888999   99999765  5588999999999999999887654 9


Q ss_pred             EEEEe
Q 020435          320 CVIWM  324 (326)
Q Consensus       320 ~vv~~  324 (326)
                      +++++
T Consensus       298 vvv~~  302 (302)
T 1iz0_A          298 VVVRL  302 (302)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99864

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.96  E-value=1.9e-29  Score=275.78  Aligned_cols=224  Identities=18%  Similarity=0.219  Sum_probs=187.0

Q ss_pred             cccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEc
Q 020435           93 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  171 (326)
Q Consensus        93 ~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~  171 (326)
                      +|+||++++++.++++|+++|+++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+||+.|+ +|++++
T Consensus      1621 ~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~ 1699 (2512)
T 2vz8_A         1621 GLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTV 1699 (2512)
T ss_dssp             CSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             ceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEe
Confidence            99999999999999999999999999999999999999888899999999999986 9999999999999999 999999


Q ss_pred             CChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCC
Q 020435          172 VISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP  246 (326)
Q Consensus       172 ~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  246 (326)
                      .++++.+.+++    +|+++++++.+   .++.+.+++.+++ |+|+||||.++.. +..++++++++ |+++.+|....
T Consensus      1700 ~s~~k~~~l~~~~~~lga~~v~~~~~---~~~~~~i~~~t~g~GvDvVld~~g~~~-l~~~l~~L~~~-Gr~V~iG~~~~ 1774 (2512)
T 2vz8_A         1700 GSAEKRAYLQARFPQLDETCFANSRD---TSFEQHVLRHTAGKGVDLVLNSLAEEK-LQASVRCLAQH-GRFLEIGKFDL 1774 (2512)
T ss_dssp             SCHHHHHHHHHHCTTCCSTTEEESSS---SHHHHHHHHTTTSCCEEEEEECCCHHH-HHHHHTTEEEE-EEEEECCCHHH
T ss_pred             CChhhhHHHHhhcCCCCceEEecCCC---HHHHHHHHHhcCCCCceEEEECCCchH-HHHHHHhcCCC-cEEEEeecccc
Confidence            99999999885    78999999888   8899999999988 9999999998655 99999999998 99999985321


Q ss_pred             CCcccccHHHHHhcCCEEEeeeccCCC--CCCCHHHHHHHH----hCCCCCCCcceeeeeccccHHHHHHHHHcCcee-E
Q 020435          247 GSQLSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRY----MDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-R  319 (326)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~----~~g~~~~~~~i~~~~~l~~i~~a~~~~~~~~~~-k  319 (326)
                      ....... ..++.+++++.++......  ..++++++++++    .+|++.  ++++++|+++++++|++.+.+++.. |
T Consensus      1775 ~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l~--p~i~~~f~l~ei~eA~~~l~~g~~~GK 1851 (2512)
T 2vz8_A         1775 SNNHALG-MAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQ--PLKCTVFPRTKVEAAFRYMAQGKHIGK 1851 (2512)
T ss_dssp             HTTCEEE-GGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCSC--CCCEEEEESSTHHHHHHHHHTTCCSSE
T ss_pred             cccCccc-ccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCcC--CCcceEecHHHHHHHHHhhhccCccce
Confidence            1111111 2345678999987654322  123455555554    456444  4578999999999999999988776 9


Q ss_pred             EEEEeC
Q 020435          320 CVIWMG  325 (326)
Q Consensus       320 ~vv~~~  325 (326)
                      +|+.++
T Consensus      1852 vVi~~~ 1857 (2512)
T 2vz8_A         1852 VVIQVR 1857 (2512)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999875

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.90  E-value=9.4e-24  Score=177.30  Aligned_cols=184  Identities=23%  Similarity=0.284  Sum_probs=139.8

Q ss_pred             cceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 020435          103 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  181 (326)
Q Consensus       103 ~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~  181 (326)
                      +.++++|+++|+++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            5689999999999999999999999998877889999999999996 9999999999999999 9999999999998899


Q ss_pred             hcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhc
Q 020435          182 RFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS  260 (326)
Q Consensus       182 ~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  260 (326)
                      ++|++++++..+   .++.+.+.+.+.+ ++|++||+.|... +..++++++++ |+++.+|.........++.. .+.+
T Consensus        81 ~~g~~~~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~  154 (198)
T 1pqw_A           81 RLGVEYVGDSRS---VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPG-GRFIELGKKDVYADASLGLA-ALAK  154 (198)
T ss_dssp             TTCCSEEEETTC---STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEE-EEEEECSCGGGTTTCEEEGG-GGTT
T ss_pred             HcCCCEEeeCCc---HHHHHHHHHHhCCCCCeEEEECCchHH-HHHHHHHhccC-CEEEEEcCCCCcCcCcCChh-HhcC
Confidence            999988888876   6788888888776 8999999998765 89999999998 99999987532122223332 3457


Q ss_pred             CCEEEeeec------cCCCCCCCHHHHHHHHhCCCCCCC
Q 020435          261 GKILMGSLF------GGLKAKSDIPILLKRYMDKELELD  293 (326)
Q Consensus       261 ~~~i~~~~~------~~~~~~~~~~~~~~l~~~g~~~~~  293 (326)
                      ++++.+...      +.....++++++++++++|++++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~  193 (198)
T 1pqw_A          155 SASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVL  193 (198)
T ss_dssp             TCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             CcEEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCC
Confidence            888876432      110113568899999999988765

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.17  E-value=1.5e-11  Score=106.06  Aligned_cols=166  Identities=14%  Similarity=0.086  Sum_probs=109.1

Q ss_pred             ccCCCEEeecC-------CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccccccccccccceEEecc
Q 020435           30 VVEGDVVIPHF-------LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  102 (326)
Q Consensus        30 ~~vGd~V~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~v~~  102 (326)
                      +++||+|++.+       ...|+.|.+|+.|..+.|.....      .. |                   ...      +
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~------~~-G-------------------~~~------~   51 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGK------PE-G-------------------VKI------N   51 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTC------CT-T-------------------EEE------T
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCC------CC-C-------------------CEE------E
Confidence            89999999988       67788888888887777753211      00 1                   221      2


Q ss_pred             cceEEcCCCCCcc-----ccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 020435          103 AHVVKVDPTVPPN-----RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  177 (326)
Q Consensus       103 ~~~~~ip~~~s~~-----~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~  177 (326)
                      ..+++.|+.....     +.+.+..+...+  .+.....+.++++||..|+| .|..+..+++. +. +|++++.+++..
T Consensus        52 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~  126 (248)
T 2yvl_A           52 GFEVYRPTLEEIILLGFERKTQIIYPKDSF--YIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFY  126 (248)
T ss_dssp             TEEEECCCHHHHHHHTSCCSSCCCCHHHHH--HHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHH
T ss_pred             EEEEeCCCHHHHHHhcCcCCCCcccchhHH--HHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHH
Confidence            3344444432211     111111122222  25567788899999999998 58888899988 76 999999999988


Q ss_pred             HHHHh----cCC-c--EEEcCCCCCCccHHHHHHHhc-CC-CccEEEEcCCcH-HHHHHHHHHhhcCCcEEEEecc
Q 020435          178 EIGKR----FGV-T--EFVNSKNCGDKSVSQIIIDMT-DG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       178 ~~~~~----~g~-~--~vi~~~~~~~~~~~~~i~~~~-~~-g~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.+++    .+. +  .++..+-      .    +.. .+ ++|+|+...+.+ ..+..+.+.|+++ |+++....
T Consensus       127 ~~a~~~~~~~~~~~~~~~~~~d~------~----~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  191 (248)
T 2yvl_A          127 KTAQKNLKKFNLGKNVKFFNVDF------K----DAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG-APVGFLLP  191 (248)
T ss_dssp             HHHHHHHHHTTCCTTEEEECSCT------T----TSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT-CEEEEEES
T ss_pred             HHHHHHHHHcCCCCcEEEEEcCh------h----hcccCCCcccEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence            87765    232 1  2222211      1    122 23 899999877766 6688999999998 99988754

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.97  E-value=5.9e-12  Score=116.56  Aligned_cols=182  Identities=14%  Similarity=0.162  Sum_probs=128.2

Q ss_pred             ccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccccccc
Q 020435           11 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS   90 (326)
Q Consensus        11 i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~   90 (326)
                      ..|++.++.|.++|++++.+.+|+++++....                        .++.                ....
T Consensus        76 ~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk------------------------~~~~----------------~~~~  115 (404)
T 1gpj_A           76 KRGSEAVRHLFRVASGLESMMVGEQEILRQVK------------------------KAYD----------------RAAR  115 (404)
T ss_dssp             EEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHH------------------------HHHH----------------HHHH
T ss_pred             ecCchHhhhheeeccCCCCCcCCcchhHHHHH------------------------HHHH----------------HHHH
Confidence            46788899999999999999999987431100                        0000                0001


Q ss_pred             cccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhccc---CCCCEEEEEccCHHHHHHHHHHHHcCCCEE
Q 020435           91 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANV---EVGSTVVIFGLGSIGLAVAEGARLCGATRI  167 (326)
Q Consensus        91 ~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~---~~~~~vlI~Gag~~G~~a~~la~~~g~~~V  167 (326)
                      .|++++|+..+...++++|++++.+.++.. .+.+++|+++......   .+|++|+|+|+|.+|.++++.++..|+.+|
T Consensus       116 ~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V  194 (404)
T 1gpj_A          116 LGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAV  194 (404)
T ss_dssp             HTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEE
T ss_pred             cCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEE
Confidence            136788888888889999999888876654 4777888765332212   479999999999999999999999998789


Q ss_pred             EEEcCChhHH-HHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHH--HHHHH--h--hcCCcEEEE
Q 020435          168 IGVDVISEKF-EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQ--EAYAC--C--RKGWGKTIV  240 (326)
Q Consensus       168 ~~~~~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~--~~~~~--l--~~~~G~~v~  240 (326)
                      +++++++++. +.++++|++ +++.     .++.+.+     .++|+|++|.+.+..+.  ..+..  +  +++ +.+++
T Consensus       195 ~v~~r~~~ra~~la~~~g~~-~~~~-----~~l~~~l-----~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~-~~~v~  262 (404)
T 1gpj_A          195 LVANRTYERAVELARDLGGE-AVRF-----DELVDHL-----ARSDVVVSATAAPHPVIHVDDVREALRKRDRR-SPILI  262 (404)
T ss_dssp             EEECSSHHHHHHHHHHHTCE-ECCG-----GGHHHHH-----HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSC-CCEEE
T ss_pred             EEEeCCHHHHHHHHHHcCCc-eecH-----HhHHHHh-----cCCCEEEEccCCCCceecHHHHHHHHHhccCC-CCEEE
Confidence            9999999886 567788875 4332     2333332     16999999998754221  44554  4  555 77777


Q ss_pred             eccCC
Q 020435          241 LGVDQ  245 (326)
Q Consensus       241 ~g~~~  245 (326)
                      ++...
T Consensus       263 vdia~  267 (404)
T 1gpj_A          263 IDIAN  267 (404)
T ss_dssp             EECCS
T ss_pred             EEccC
Confidence            77643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.70  E-value=2e-08  Score=91.46  Aligned_cols=139  Identities=21%  Similarity=0.205  Sum_probs=95.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcE--EEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      +++|+|+|+|++|++++++++.+|+ +|+++++++++.+.+++++.+.  +++.+.   .++.+.+.     ++|+||+|
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~DvVI~~  237 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA-----EADLLIGA  237 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH-----TCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCH---HHHHHHHc-----CCCEEEEC
Confidence            4899999999999999999999999 9999999999999888766443  343333   34443332     69999999


Q ss_pred             CCcHHH------HHHHHHHhhcCCcEEEEeccCCCCC-----cccccHHHHHhcCCEEEeeec--cCCC-------CCCC
Q 020435          218 VGLASL------VQEAYACCRKGWGKTIVLGVDQPGS-----QLSLSSFEVLHSGKILMGSLF--GGLK-------AKSD  277 (326)
Q Consensus       218 ~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~~~~i~~~~~--~~~~-------~~~~  277 (326)
                      ++.+..      ....++.++++ |.++.++...+..     ..+++...+..+++++.+...  +...       .+..
T Consensus       238 ~~~~~~~~~~li~~~~~~~~~~g-~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~  316 (361)
T 1pjc_A          238 VLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNST  316 (361)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHH
T ss_pred             CCcCCCCCCeecCHHHHhhCCCC-CEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHH
Confidence            987542      45678899998 9999998754321     223333334456677666421  1000       0123


Q ss_pred             HHHHHHHHhCC
Q 020435          278 IPILLKRYMDK  288 (326)
Q Consensus       278 ~~~~~~l~~~g  288 (326)
                      +..+++++.+|
T Consensus       317 ~~~l~~l~~~G  327 (361)
T 1pjc_A          317 LPYVVKLANQG  327 (361)
T ss_dssp             HHHHHHHHHHG
T ss_pred             HHHHHHHHhCC
Confidence            45677777776

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.60  E-value=2.9e-08  Score=93.31  Aligned_cols=169  Identities=16%  Similarity=0.142  Sum_probs=110.2

Q ss_pred             hhhhhhhhhhcc--cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHH
Q 020435          125 STGVGAAWRTAN--VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQI  202 (326)
Q Consensus       125 ~ta~~~l~~~~~--~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~  202 (326)
                      .++|+++ .+..  ..+|++|+|+|.|.+|..+++.++.+|+ +|+++++++++.+.++.+|++ ++        ++.+.
T Consensus       258 ~s~~~g~-~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~--------~l~e~  326 (494)
T 3ce6_A          258 HSLIDGI-NRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VV--------TVEEA  326 (494)
T ss_dssp             HHHHHHH-HHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC--------CHHHH
T ss_pred             hhhhHHH-HhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Ee--------cHHHH
Confidence            4455553 3333  6789999999999999999999999999 999999999998888889985 32        12222


Q ss_pred             HHHhcCCCccEEEEcCCcHHHHH-HHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCC---EEEeeeccCCCCCCCH
Q 020435          203 IIDMTDGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK---ILMGSLFGGLKAKSDI  278 (326)
Q Consensus       203 i~~~~~~g~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~  278 (326)
                      +     .++|+|++|.+....+. ..++.++++ +.++.+|...    ..++...+..+.+   .+.+.... +. ..++
T Consensus       327 l-----~~aDvVi~atgt~~~i~~~~l~~mk~g-gilvnvG~~~----~eId~~aL~~~aL~~~~I~~~ldv-~~-~~~~  394 (494)
T 3ce6_A          327 I-----GDADIVVTATGNKDIIMLEHIKAMKDH-AILGNIGHFD----NEIDMAGLERSGATRVNVKPQVDL-WT-FGDT  394 (494)
T ss_dssp             G-----GGCSEEEECSSSSCSBCHHHHHHSCTT-CEEEECSSSG----GGBCHHHHHHTTCEEEEEETTEEE-EE-CTTT
T ss_pred             H-----hCCCEEEECCCCHHHHHHHHHHhcCCC-cEEEEeCCCC----CccCHHHHHHhhhccceEEEEEEE-ee-cCCc
Confidence            1     26999999999876555 788999998 9999998642    2355555555444   34432210 00 0111


Q ss_pred             HHHHHHHhCCCCC----CCcc----eeeeeccccHHHHHHHHHcCce
Q 020435          279 PILLKRYMDKELE----LDKF----VTHEMKFEEINSAFDLLIKGKC  317 (326)
Q Consensus       279 ~~~~~l~~~g~~~----~~~~----i~~~~~l~~i~~a~~~~~~~~~  317 (326)
                      .+.+.++.+|++.    ..+.    +++.+ .+++.++++.+.+++.
T Consensus       395 ~~~l~LL~~grlvnL~~~TPH~a~~~~~s~-~~qa~~ai~~~~~g~~  440 (494)
T 3ce6_A          395 GRSIIVLSEGRLLNLGNATGHPSFVMSNSF-ANQTIAQIELWTKNDE  440 (494)
T ss_dssp             CCEEEEEGGGSCHHHHHSCCSCHHHHHHHH-HHHHHHHHHHHHTGGG
T ss_pred             chHHHHHhCCCEEeccCCCCCccccchHHH-HHHHHHHHHHHHcCCC
Confidence            2223345555442    1111    22233 5577788887777544

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.57  E-value=1.2e-07  Score=86.98  Aligned_cols=148  Identities=20%  Similarity=0.250  Sum_probs=97.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCC------------CCc----cHHH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNC------------GDK----SVSQ  201 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~------------~~~----~~~~  201 (326)
                      ++++|+|+|+|.+|++++++++.+|+ +|+++++++++.+.++++|++.+ ++..+.            .+.    ...+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68999999999999999999999999 89999999999998888998654 222110            000    0112


Q ss_pred             HHHHhcCCCccEEEEcC---CcH--HH-HHHHHHHhhcCCcEEEEeccCCCCC-cccccHHHHHhcCCEEEeeeccCCCC
Q 020435          202 IIIDMTDGGADYCFECV---GLA--SL-VQEAYACCRKGWGKTIVLGVDQPGS-QLSLSSFEVLHSGKILMGSLFGGLKA  274 (326)
Q Consensus       202 ~i~~~~~~g~d~v~d~~---g~~--~~-~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~  274 (326)
                      .+.+... ++|+||+|+   +.+  .. ....++.++++ +.++.++...+.. ....+...+..+++++.+..  +.. 
T Consensus       250 ~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g-~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~--~~p-  324 (384)
T 1l7d_A          250 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHT--NVP-  324 (384)
T ss_dssp             HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTCSSTTCCTTCEEEETTEEEECCS--SGG-
T ss_pred             HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-CEEEEEecCCCCCeecccCCcEEEECCEEEEEeC--CCc-
Confidence            2434333 799999999   532  22 36788899998 9999998643221 11112223344678887763  221 


Q ss_pred             CCCHHHHHHHHhCCCCCC
Q 020435          275 KSDIPILLKRYMDKELEL  292 (326)
Q Consensus       275 ~~~~~~~~~l~~~g~~~~  292 (326)
                      .....++.+++.++.+++
T Consensus       325 ~~~~~~a~~l~~~~~~~~  342 (384)
T 1l7d_A          325 SRVAADASPLFAKNLLNF  342 (384)
T ss_dssp             GGGHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhHHHH
Confidence            223566788888775543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.56  E-value=1.8e-07  Score=85.58  Aligned_cols=120  Identities=17%  Similarity=0.169  Sum_probs=84.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      ++++|+|+|+|.+|++++++++.+|+ +|+++++++++.+.+++ +|++...+...  ..++.+.+.     ++|+|++|
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~--~~~l~~~l~-----~aDvVi~~  238 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSS--AYELEGAVK-----RADLVIGA  238 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECC--HHHHHHHHH-----HCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCC--HHHHHHHHc-----CCCEEEEC
Confidence            58899999999999999999999999 99999999999888876 67653222211  033333332     58999999


Q ss_pred             CCcHHH------HHHHHHHhhcCCcEEEEeccCCCC-----CcccccHHHHHhcCCEEEee
Q 020435          218 VGLASL------VQEAYACCRKGWGKTIVLGVDQPG-----SQLSLSSFEVLHSGKILMGS  267 (326)
Q Consensus       218 ~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~i~~~  267 (326)
                      ++.+..      ....+..++++ +.++.++...+.     .+.+++...+..+++.+.+.
T Consensus       239 ~~~p~~~t~~li~~~~l~~mk~g-~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~  298 (377)
T 2vhw_A          239 VLVPGAKAPKLVSNSLVAHMKPG-AVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCV  298 (377)
T ss_dssp             CCCTTSCCCCCBCHHHHTTSCTT-CEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECB
T ss_pred             CCcCCCCCcceecHHHHhcCCCC-cEEEEEecCCCCccccccCCCCCCCEEEECCEEEEec
Confidence            986643      46788899998 999999864321     22333333333456665443

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.51  E-value=4e-07  Score=83.08  Aligned_cols=141  Identities=19%  Similarity=0.256  Sum_probs=87.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      ++++|+|+|+|.+|+.++++++..|+ +|+++++++++.+.+++ +|.+...+..+  ..++.+.+.     ++|+|++|
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~~~-----~~DvVi~~  236 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTAT--EANIKKSVQ-----HADLLIGA  236 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECC--HHHHHHHHH-----HCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCC--HHHHHHHHh-----CCCEEEEC
Confidence            46899999999999999999999999 99999999998887765 77653233222  133333332     59999999


Q ss_pred             CCcHHH------HHHHHHHhhcCCcEEEEeccCCCCC-----cccccHHHHHhcCCEEEeeecc--CCC-------CCCC
Q 020435          218 VGLASL------VQEAYACCRKGWGKTIVLGVDQPGS-----QLSLSSFEVLHSGKILMGSLFG--GLK-------AKSD  277 (326)
Q Consensus       218 ~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~--~~~-------~~~~  277 (326)
                      ++.+..      .+..++.++++ |.++.++...+..     +.+++...+..+++.+.+...-  ...       .+..
T Consensus       237 ~g~~~~~~~~li~~~~l~~mk~g-g~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~  315 (369)
T 2eez_A          237 VLVPGAKAPKLVTRDMLSLMKEG-AVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQT  315 (369)
T ss_dssp             CC-------CCSCHHHHTTSCTT-CEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHH
T ss_pred             CCCCccccchhHHHHHHHhhcCC-CEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHH
Confidence            986641      46778899998 9999998754321     1223322333456666654210  000       1223


Q ss_pred             HHHHHHHHhCC
Q 020435          278 IPILLKRYMDK  288 (326)
Q Consensus       278 ~~~~~~l~~~g  288 (326)
                      +..+++++.+|
T Consensus       316 ~~~l~~l~~~g  326 (369)
T 2eez_A          316 LPYVLKLAEKG  326 (369)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhcC
Confidence            56667777666

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.44  E-value=6.2e-07  Score=82.58  Aligned_cols=126  Identities=18%  Similarity=0.224  Sum_probs=84.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEE-cCCC--CC--------CccH----HHHH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKN--CG--------DKSV----SQII  203 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi-~~~~--~~--------~~~~----~~~i  203 (326)
                      ++++|+|+|+|.+|++++++++.+|+ +|+++++++++.+.++++|++.+. +..+  ..        ..++    .+.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            58899999999999999999999999 999999999999988889986431 1100  00        0111    1123


Q ss_pred             HHhcCCCccEEEEcCCcH-----HH-HHHHHHHhhcCCcEEEEeccCCCCCcccccHH-H--HHhcCCEEEeee
Q 020435          204 IDMTDGGADYCFECVGLA-----SL-VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF-E--VLHSGKILMGSL  268 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g~~-----~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~--~~~~~~~i~~~~  268 (326)
                      .+... ++|+||+|++.+     .. ....++.++++ +.++.++...++ .+..... .  +..+++++.+..
T Consensus       250 ~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g-~vIVdva~~~Gg-~v~~~~~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          250 AAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAG-SVIVDLAAQNGG-NCEYTVPGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGTC-SBTTCCTTSEEECTTSCEEECCS
T ss_pred             HHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-cEEEEEcCCCCC-CcCcccCCCceEEECCEEEEeeC
Confidence            33322 699999995322     21 25788999998 999999864322 1222211 1  344678888763

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.19  E-value=1.2e-06  Score=76.53  Aligned_cols=103  Identities=18%  Similarity=0.264  Sum_probs=72.7

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCC-cEEEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~i~  204 (326)
                      +.....+.++++||..|+|. |..+..+++..+ ..+|++++.+++..+.+++    .+. +.+-.. .   .++.+   
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~-~---~d~~~---  175 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK-V---RDISE---  175 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEE-C---CCGGG---
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEE-E---CCHHH---
Confidence            55667888999999999887 888888898853 2399999999998887754    343 222111 1   12211   


Q ss_pred             HhcC-CCccEEEEcCCcH-HHHHHHHHHhhcCCcEEEEecc
Q 020435          205 DMTD-GGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~-~g~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       ... +.+|+|+.....+ ..+..+.+.|+++ |.++....
T Consensus       176 -~~~~~~~D~V~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  214 (277)
T 1o54_A          176 -GFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP  214 (277)
T ss_dssp             -CCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred             -cccCCccCEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence             123 3799999666554 5688899999998 99988753

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.06  E-value=4.7e-06  Score=75.46  Aligned_cols=105  Identities=20%  Similarity=0.258  Sum_probs=75.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCC--CCCCccH------------HHHHH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK--NCGDKSV------------SQIII  204 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~--~~~~~~~------------~~~i~  204 (326)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|++.++++++.+.++++|++.+ +.+  ......+            .+.+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~-~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWL-DLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEEC-CCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEE-eccccccccccchhhhhHHHHhhhHHHHH
Confidence            67899999999999999999999999 99999999999999999987532 210  0000001            11222


Q ss_pred             HhcCCCccEEEEcCCcH-----H-HHHHHHHHhhcCCcEEEEeccCCCC
Q 020435          205 DMTDGGADYCFECVGLA-----S-LVQEAYACCRKGWGKTIVLGVDQPG  247 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g~~-----~-~~~~~~~~l~~~~G~~v~~g~~~~~  247 (326)
                      +.. .++|+||.++..+     . .....++.++++ ..+|.++...++
T Consensus       261 e~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpG-sVIVDvA~d~GG  307 (381)
T 3p2y_A          261 DAI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPG-SVVVDLAGETGG  307 (381)
T ss_dssp             HHH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGTC
T ss_pred             HHH-hcCCEEEECCCCCCcccceeecHHHHhcCCCC-cEEEEEeCCCCC
Confidence            222 2799999986332     1 246889999998 999999875443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.05  E-value=3e-05  Score=61.39  Aligned_cols=91  Identities=21%  Similarity=0.158  Sum_probs=66.2

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      ..++++|+|+|+|.+|..+++.++..|. +|+++++++++.+.++ ..|... +..+.   .+ .+.+.+....++|+||
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~-~~~d~---~~-~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFT-VVGDA---AE-FETLKECGMEKADMVF   89 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEE-EESCT---TS-HHHHHTTTGGGCSEEE
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcE-EEecC---CC-HHHHHHcCcccCCEEE
Confidence            4467899999999999999999999998 9999999999888777 667643 33222   12 2233332112799999


Q ss_pred             EcCCcHHHHHHHHHHhhc
Q 020435          216 ECVGLASLVQEAYACCRK  233 (326)
Q Consensus       216 d~~g~~~~~~~~~~~l~~  233 (326)
                      .|++.......+...++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           90 AFTNDDSTNFFISMNARY  107 (155)
T ss_dssp             ECSSCHHHHHHHHHHHHH
T ss_pred             EEeCCcHHHHHHHHHHHH
Confidence            999987755566566554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.04  E-value=9.3e-05  Score=55.13  Aligned_cols=93  Identities=17%  Similarity=0.147  Sum_probs=65.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHhcCCcEEE-cCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      +.+|+|+|+|.+|..+++.+...| . +|+++++++++.+.+...+...+. +..+      .+.+.+... ++|+||+|
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~-~~d~vi~~   76 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGVATKQVDAKD------EAGLAKALG-GFDAVISA   76 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTCEEEECCTTC------HHHHHHHTT-TCSEEEEC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCCcEEEecCCC------HHHHHHHHc-CCCEEEEC
Confidence            468999999999999999999999 6 899999999998888766654332 2222      233444433 79999999


Q ss_pred             CCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          218 VGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       218 ~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ++..........+...+ -.++.+
T Consensus        77 ~~~~~~~~~~~~~~~~g-~~~~~~   99 (118)
T 3ic5_A           77 APFFLTPIIAKAAKAAG-AHYFDL   99 (118)
T ss_dssp             SCGGGHHHHHHHHHHTT-CEEECC
T ss_pred             CCchhhHHHHHHHHHhC-CCEEEe
Confidence            98766344444455554 555544

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.02  E-value=1e-05  Score=73.92  Aligned_cols=104  Identities=16%  Similarity=0.240  Sum_probs=73.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcC-C---CC-CCccHH------------H
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS-K---NC-GDKSVS------------Q  201 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~-~---~~-~~~~~~------------~  201 (326)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|++.++++++.+.++++|++.+... .   +. ....+.            +
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            57899999999999999999999999 99999999999999998887522110 0   00 000011            1


Q ss_pred             HHHHhcCCCccEEEEcCCcH-----H-HHHHHHHHhhcCCcEEEEeccCC
Q 020435          202 IIIDMTDGGADYCFECVGLA-----S-LVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       202 ~i~~~~~~g~d~v~d~~g~~-----~-~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      .+.+... ++|+||.|+..+     . +.+..++.++++ ..+|.++...
T Consensus       268 ~l~e~l~-~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~G-sVIVDvA~d~  315 (405)
T 4dio_A          268 LVAEHIA-KQDIVITTALIPGRPAPRLVTREMLDSMKPG-SVVVDLAVER  315 (405)
T ss_dssp             HHHHHHH-TCSEEEECCCCSSSCCCCCBCHHHHTTSCTT-CEEEETTGGG
T ss_pred             HHHHHhc-CCCEEEECCcCCCCCCCEEecHHHHhcCCCC-CEEEEEeCCC
Confidence            2222211 799999986422     1 246889999998 9999998643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.02  E-value=2.7e-06  Score=66.62  Aligned_cols=107  Identities=12%  Similarity=0.105  Sum_probs=75.6

Q ss_pred             hhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHhcCCcEEEcCCCCCCccHHH
Q 020435          123 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQ  201 (326)
Q Consensus       123 ~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~  201 (326)
                      +++++++++ +.+....+++|+|+|+|.+|.++++.++..|. +|++.++++++.+. .++++.+ +...+     ++.+
T Consensus         5 ~~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~-~~~~~-----~~~~   76 (144)
T 3oj0_A            5 KVSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYE-YVLIN-----DIDS   76 (144)
T ss_dssp             CCSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCE-EEECS-----CHHH
T ss_pred             cccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCc-eEeec-----CHHH
Confidence            456677754 44444559999999999999999999888898 69999999988765 5667753 22222     2333


Q ss_pred             HHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          202 IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       202 ~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      .+.     ++|+|++|.+...... ....++++ +.++.++..
T Consensus        77 ~~~-----~~Divi~at~~~~~~~-~~~~l~~g-~~vid~~~p  112 (144)
T 3oj0_A           77 LIK-----NNDVIITATSSKTPIV-EERSLMPG-KLFIDLGNP  112 (144)
T ss_dssp             HHH-----TCSEEEECSCCSSCSB-CGGGCCTT-CEEEECCSS
T ss_pred             Hhc-----CCCEEEEeCCCCCcEe-eHHHcCCC-CEEEEccCC
Confidence            332     5899999999764221 22567887 888888753

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.99  E-value=9.8e-06  Score=70.20  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=69.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      .++.+||.+|+|. |..+..+++.. +. +|++++.+++..+.+++.+.. .++..+.   .++     ....+.+|+|+
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~-----~~~~~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRL-----PFSDTSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT---TSC-----SBCTTCEEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcch---hhC-----CCCCCceeEEE
Confidence            5788999999988 88888999886 66 999999999999988775532 2332222   111     11223799999


Q ss_pred             EcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          216 ECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       216 d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .... ...+..+.+.|+++ |+++....
T Consensus       154 ~~~~-~~~l~~~~~~L~pg-G~l~~~~~  179 (269)
T 1p91_A          154 RIYA-PCKAEELARVVKPG-GWVITATP  179 (269)
T ss_dssp             EESC-CCCHHHHHHHEEEE-EEEEEEEE
T ss_pred             EeCC-hhhHHHHHHhcCCC-cEEEEEEc
Confidence            6544 44489999999998 99988754

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.96  E-value=2.3e-05  Score=68.65  Aligned_cols=98  Identities=13%  Similarity=0.171  Sum_probs=73.1

Q ss_pred             hcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHHHhc
Q 020435          134 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       134 ~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      .++++++++||.+|+|+.+..++.+++..|+ +|++++.+++..+.+++    .|.+  .++..+.   .+       +.
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa---~~-------l~  185 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE---TV-------ID  185 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG---GG-------GG
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch---hh-------CC
Confidence            4678999999999998877777888888898 99999999999888765    3432  2232222   11       22


Q ss_pred             CCCccEEEEcCCcH---HHHHHHHHHhhcCCcEEEEecc
Q 020435          208 DGGADYCFECVGLA---SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       208 ~~g~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ++.||+|+.....+   ..++.+.+.|+++ |+++....
T Consensus       186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPG-G~Lvv~~~  223 (298)
T 3fpf_A          186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTE-TRIIYRTY  223 (298)
T ss_dssp             GCCCSEEEECTTCSCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred             CCCcCEEEECCCccCHHHHHHHHHHHcCCC-cEEEEEcC
Confidence            34899999655443   4688999999998 99998753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.84  E-value=0.00027  Score=57.33  Aligned_cols=95  Identities=16%  Similarity=0.225  Sum_probs=67.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHhcCCcEEE-cCCCCCCccHHHHHHHhcCC-CccEEEE
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDG-GADYCFE  216 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~-g~d~v~d  216 (326)
                      +++|+|+|.|.+|..+++.++.. |. +|+++++++++.+.+++.|...+. |..+      .+.+.+.++- ++|+|+.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~~------~~~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDATD------PDFWERILDTGHVKLVLL  111 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTTC------HHHHHTBCSCCCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCCC------HHHHHhccCCCCCCEEEE
Confidence            67899999999999999999998 98 899999999999988888876443 2222      2234444233 8999999


Q ss_pred             cCCcHHHHHHHHHHhhcC--CcEEEEe
Q 020435          217 CVGLASLVQEAYACCRKG--WGKTIVL  241 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~--~G~~v~~  241 (326)
                      +.++..........++..  ...++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          112 AMPHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             eCCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            999866444444444443  0455543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.80  E-value=3.9e-06  Score=75.47  Aligned_cols=105  Identities=19%  Similarity=0.208  Sum_probs=68.7

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHhc----C-------------CcEEEcCC
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF----G-------------VTEFVNSK  192 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~~----g-------------~~~vi~~~  192 (326)
                      +.....+.++++||-.|+|. |..+..+++..|. .+|++++.+++..+.+++.    +             .-.++..+
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d  175 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  175 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence            45566788999999999877 7888888888763 3899999999887776541    1             11222222


Q ss_pred             CCCCccHHHHHHHhcCCCccEEEEcCCcH-HHHHHHHHHhhcCCcEEEEecc
Q 020435          193 NCGDKSVSQIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       193 ~~~~~~~~~~i~~~~~~g~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      -   .+.   ...+..+.+|+|+-....+ ..+..+.+.|+++ |.++.+..
T Consensus       176 ~---~~~---~~~~~~~~fD~V~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~  220 (336)
T 2b25_A          176 I---SGA---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV  220 (336)
T ss_dssp             T---TCC---C-------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred             h---HHc---ccccCCCCeeEEEECCCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence            2   111   0111123699998544443 3478899999998 99997753

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.79  E-value=0.00011  Score=67.33  Aligned_cols=92  Identities=17%  Similarity=0.252  Sum_probs=72.2

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      .-.|++|+|.|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +.        ++.+.+     ...|+++.
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~-v~--------~Leeal-----~~ADIVi~  281 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFR-LV--------KLNEVI-----RQVDIVIT  281 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC--------CHHHHT-----TTCSEEEE
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCE-ec--------cHHHHH-----hcCCEEEE
Confidence            3479999999999999999999999999 999999988777666666653 21        222222     16899999


Q ss_pred             cCCcHHHHH-HHHHHhhcCCcEEEEeccC
Q 020435          217 CVGLASLVQ-EAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       217 ~~g~~~~~~-~~~~~l~~~~G~~v~~g~~  244 (326)
                      |.+....+. ..+..++++ +.++.+|..
T Consensus       282 atgt~~lI~~e~l~~MK~g-ailINvgrg  309 (435)
T 3gvp_A          282 CTGNKNVVTREHLDRMKNS-CIVCNMGHS  309 (435)
T ss_dssp             CSSCSCSBCHHHHHHSCTT-EEEEECSST
T ss_pred             CCCCcccCCHHHHHhcCCC-cEEEEecCC
Confidence            988766454 788999998 999888764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.76  E-value=7.7e-05  Score=65.62  Aligned_cols=93  Identities=19%  Similarity=0.242  Sum_probs=71.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      -.+++|+|+|.|.+|..+++.++..|+ +|++.+++.++.+.+.++|++. ++.     .++.+.+     ..+|+|+.+
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~~~-----~~l~~~l-----~~aDvVi~~  220 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEP-FHI-----SKAAQEL-----RDVDVCINT  220 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEE-EEG-----GGHHHHT-----TTCSEEEEC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCee-cCh-----hhHHHHh-----cCCCEEEEC
Confidence            368999999999999999999999999 9999999988877777788753 322     1222222     269999999


Q ss_pred             CCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          218 VGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       218 ~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..........+..++++ +.++.++.
T Consensus       221 ~p~~~i~~~~l~~mk~~-~~lin~ar  245 (293)
T 3d4o_A          221 IPALVVTANVLAEMPSH-TFVIDLAS  245 (293)
T ss_dssp             CSSCCBCHHHHHHSCTT-CEEEECSS
T ss_pred             CChHHhCHHHHHhcCCC-CEEEEecC
Confidence            87644234567889998 99998875

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.59  E-value=0.00015  Score=63.04  Aligned_cols=103  Identities=19%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHhc-----C--Cc--EEEcCCCCCCccHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF-----G--VT--EFVNSKNCGDKSVS  200 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~~-----g--~~--~vi~~~~~~~~~~~  200 (326)
                      +.....+.++++||..|+| .|..+..+++..+ ..+|++++.+++..+.+++.     |  .+  .++..+      +.
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d------~~  163 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD------LA  163 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC------GG
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc------hH
Confidence            4566778899999999988 5888888888753 23999999999988776542     4  22  222221      11


Q ss_pred             HHHHHhcCCCccEEEEcCCcH-HHHHHHHHHhhcCCcEEEEecc
Q 020435          201 QIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       201 ~~i~~~~~~g~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.  ....+.+|+|+.....+ ..+..+.+.|+++ |.++.+..
T Consensus       164 ~~--~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  204 (280)
T 1i9g_A          164 DS--ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA  204 (280)
T ss_dssp             GC--CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             hc--CCCCCceeEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence            10  01123799999665554 5688999999998 99988754

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.58  E-value=0.0003  Score=61.11  Aligned_cols=102  Identities=23%  Similarity=0.261  Sum_probs=70.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHhcCCcEE-E--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEF-V--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-~~~~g~~~v-i--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      +|+++||+|+ ++||.+.++.+...|+ +|+.+++++++.+. ++++|.... +  |..+  .++..+.+.+...  +++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G~i  104 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSAN--LAELDRLYEKVKAEAGRI  104 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHSCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            5889999987 8999999999999999 99999999988775 455664322 2  2222  1222222333322  389


Q ss_pred             cEEEEcCCcH-------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          212 DYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       212 d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      |++++++|..                         ...+.++..++++ |.+|.++..
T Consensus       105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-G~IInisS~  161 (273)
T 4fgs_A          105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-SSVVLTGST  161 (273)
T ss_dssp             EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEECCG
T ss_pred             CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CeEEEEeeh
Confidence            9999988851                         1344556677786 999998754

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.57  E-value=0.00027  Score=64.93  Aligned_cols=92  Identities=17%  Similarity=0.145  Sum_probs=71.5

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +.        ++.+.+.     ..|+|+.
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~-vv--------~LeElL~-----~ADIVv~  308 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFE-VV--------TLDDAAS-----TADIVVT  308 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE-EC--------CHHHHGG-----GCSEEEE
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCce-ec--------cHHHHHh-----hCCEEEE
Confidence            3579999999999999999999999999 999999888776665556653 22        2322222     5899999


Q ss_pred             cCCcHHHH-HHHHHHhhcCCcEEEEeccC
Q 020435          217 CVGLASLV-QEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       217 ~~g~~~~~-~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +.+....+ ...+..++++ +.++.+|..
T Consensus       309 atgt~~lI~~e~l~~MK~G-AILINvGRg  336 (464)
T 3n58_A          309 TTGNKDVITIDHMRKMKDM-CIVGNIGHF  336 (464)
T ss_dssp             CCSSSSSBCHHHHHHSCTT-EEEEECSSS
T ss_pred             CCCCccccCHHHHhcCCCC-eEEEEcCCC
Confidence            99876544 5788999998 888888753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.55  E-value=0.0013  Score=50.76  Aligned_cols=95  Identities=9%  Similarity=0.082  Sum_probs=66.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      .++|+|.|.|.+|..+++.++..|. +|+++++++++.+.+++.|...+. .+.    .-.+.+.+..-.++|.++-+.+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~-gd~----~~~~~l~~a~i~~ad~vi~~~~   80 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVL-GNA----ANEEIMQLAHLECAKWLILTIP   80 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEE-SCT----TSHHHHHHTTGGGCSEEEECCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEE-CCC----CCHHHHHhcCcccCCEEEEECC
Confidence            5689999999999999999999998 999999999999999888875433 222    1122333321228999999999


Q ss_pred             cHHHHH---HHHHHhhcCCcEEEEe
Q 020435          220 LASLVQ---EAYACCRKGWGKTIVL  241 (326)
Q Consensus       220 ~~~~~~---~~~~~l~~~~G~~v~~  241 (326)
                      ......   ...+.+.+. .+++.-
T Consensus        81 ~~~~n~~~~~~a~~~~~~-~~iiar  104 (140)
T 3fwz_A           81 NGYEAGEIVASARAKNPD-IEIIAR  104 (140)
T ss_dssp             CHHHHHHHHHHHHHHCSS-SEEEEE
T ss_pred             ChHHHHHHHHHHHHHCCC-CeEEEE
Confidence            765222   334445555 555543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.54  E-value=0.00021  Score=61.09  Aligned_cols=101  Identities=16%  Similarity=0.186  Sum_probs=72.9

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQI  202 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~  202 (326)
                      +.....+.++++||..|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|..   .++..      ++.  
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~------d~~--  155 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK------DIY--  155 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS------CGG--
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC------chh--
Confidence            55667888999999999886 888888888853 3399999999988877754    3432   22222      221  


Q ss_pred             HHHhcCC-CccEEEEcCCcH-HHHHHHHHHhhcCCcEEEEecc
Q 020435          203 IIDMTDG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       203 i~~~~~~-g~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                        +.... .+|+|+.....+ ..+..+.+.|+++ |.++.+..
T Consensus       156 --~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  195 (255)
T 3mb5_A          156 --EGIEEENVDHVILDLPQPERVVEHAAKALKPG-GFFVAYTP  195 (255)
T ss_dssp             --GCCCCCSEEEEEECSSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             --hccCCCCcCEEEECCCCHHHHHHHHHHHcCCC-CEEEEEEC
Confidence              12233 799999666654 3588999999998 99988753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.54  E-value=0.00014  Score=64.27  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=71.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      -.+.+|+|+|+|.+|..+++.++..|+ +|++.+++.++.+.+.++|.+ +++.     .++.+    .. .++|+|+.+
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~-----~~l~~----~l-~~aDvVi~~  222 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHT-----DELKE----HV-KDIDICINT  222 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEG-----GGHHH----HS-TTCSEEEEC
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEch-----hhHHH----Hh-hCCCEEEEC
Confidence            368899999999999999999999999 999999998887777677764 3322     12222    22 269999999


Q ss_pred             CCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          218 VGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       218 ~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++....-...+..++++ +.++.++..
T Consensus       223 ~p~~~i~~~~~~~mk~g-~~lin~a~g  248 (300)
T 2rir_A          223 IPSMILNQTVLSSMTPK-TLILDLASR  248 (300)
T ss_dssp             CSSCCBCHHHHTTSCTT-CEEEECSST
T ss_pred             CChhhhCHHHHHhCCCC-CEEEEEeCC
Confidence            88644234567788998 999998763

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.53  E-value=0.0014  Score=56.03  Aligned_cols=77  Identities=9%  Similarity=0.058  Sum_probs=53.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcE-EE--cCCCCCCccHHHHHHHhcC--CCccEE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--GGADYC  214 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--~g~d~v  214 (326)
                      ++|||+|+ +++|.++++.+...|+ +|+.+++++++.+.+.+.+... .+  |..+  .++..+.+.+...  +++|++
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~v~~~~~~~g~iDiL   79 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVAD--PLTLKKFVEYAMEKLQRIDVL   79 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            68999987 8999999999999999 9999999998887765544322 22  2222  1223333333222  389999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      ++++|.
T Consensus        80 VNNAG~   85 (247)
T 3ged_A           80 VNNACR   85 (247)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            998874

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.52  E-value=0.00079  Score=56.77  Aligned_cols=99  Identities=12%  Similarity=0.065  Sum_probs=67.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .+.+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+...++..++..+-    .  +.+.+... ++|+||++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~Dl----~--~~~~~~~~-~~D~vi~~   91 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVANL----E--EDFSHAFA-SIDAVVFA   91 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEECCT----T--SCCGGGGT-TCSEEEEC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEccc----H--HHHHHHHc-CCCEEEEC
Confidence            4789999997 9999999999999998 9999999999988877666623333222    1  22333332 79999999


Q ss_pred             CCcHH-------------HHHHHHHHhhcC-CcEEEEeccCC
Q 020435          218 VGLAS-------------LVQEAYACCRKG-WGKTIVLGVDQ  245 (326)
Q Consensus       218 ~g~~~-------------~~~~~~~~l~~~-~G~~v~~g~~~  245 (326)
                      ++...             ....+++.++.. .+++|.++...
T Consensus        92 ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  133 (236)
T 3e8x_A           92 AGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG  133 (236)
T ss_dssp             CCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred             CCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            98521             122333333321 16899887654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.50  E-value=0.0013  Score=50.68  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=58.2

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      ..+|+|.|+|.+|..+++.+...|. +|+++++++++.+.+++.+.. ++..+.    .-.+.+.+..-.++|+++.+.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~-~~~gd~----~~~~~l~~~~~~~~d~vi~~~~   79 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFD-AVIADP----TDESFYRSLDLEGVSAVLITGS   79 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCE-EEECCT----TCHHHHHHSCCTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCc-EEECCC----CCHHHHHhCCcccCCEEEEecC
Confidence            4689999999999999999999999 999999999999888877764 332222    1123344432238999999999


Q ss_pred             cHH
Q 020435          220 LAS  222 (326)
Q Consensus       220 ~~~  222 (326)
                      +..
T Consensus        80 ~~~   82 (141)
T 3llv_A           80 DDE   82 (141)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            765

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.50  E-value=0.00049  Score=52.98  Aligned_cols=76  Identities=16%  Similarity=0.320  Sum_probs=55.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      +++|+|+|+|.+|..+++.++..|. +|+++++++++.+.+++.+.. ++..+.   .+ .+.+.+..-+++|+++.|.+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~-~~~~d~---~~-~~~l~~~~~~~~d~vi~~~~   79 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATH-AVIANA---TE-ENELLSLGIRNFEYVIVAIG   79 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSE-EEECCT---TC-HHHHHTTTGGGCSEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCE-EEEeCC---CC-HHHHHhcCCCCCCEEEECCC
Confidence            5689999999999999999999998 899999988887777666653 332222   12 23344331237999999999


Q ss_pred             cH
Q 020435          220 LA  221 (326)
Q Consensus       220 ~~  221 (326)
                      ..
T Consensus        80 ~~   81 (144)
T 2hmt_A           80 AN   81 (144)
T ss_dssp             SC
T ss_pred             Cc
Confidence            74

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.45  E-value=0.00021  Score=66.67  Aligned_cols=91  Identities=18%  Similarity=0.226  Sum_probs=70.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      -.|++++|+|+|.+|.++++.++..|+ +|+++++++.+.+.+...+.+ +.+.++     .        ...+|+++++
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~lee-----~--------~~~aDvVi~a  327 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTLED-----V--------VSEADIFVTT  327 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCGGG-----T--------TTTCSEEEEC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCHHH-----H--------HHhcCEEEeC
Confidence            368999999999999999999999999 999999998887777766653 222111     1        1169999999


Q ss_pred             CCcHHHHH-HHHHHhhcCCcEEEEeccC
Q 020435          218 VGLASLVQ-EAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       218 ~g~~~~~~-~~~~~l~~~~G~~v~~g~~  244 (326)
                      .+....+. ..+..++++ +.++..|..
T Consensus       328 tG~~~vl~~e~l~~mk~g-aiVvNaG~~  354 (488)
T 3ond_A          328 TGNKDIIMLDHMKKMKNN-AIVCNIGHF  354 (488)
T ss_dssp             SSCSCSBCHHHHTTSCTT-EEEEESSST
T ss_pred             CCChhhhhHHHHHhcCCC-eEEEEcCCC
Confidence            98765443 478889998 888888753

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.42  E-value=0.0025  Score=54.12  Aligned_cols=82  Identities=22%  Similarity=0.182  Sum_probs=54.0

Q ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEEEcCCCCCCccHHHHHHHhcCCCccEE
Q 020435          137 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       137 ~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      -.++++|||+|+ |.+|..+++.+...|+ +|++++++.++.+.+. .+.....+..-+..+.+-.+.+.+.. +++|++
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~id~l   88 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT-SNLDIL   88 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC-SCCSEE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc-CCCCEE
Confidence            346889999987 9999999999999999 9999999988877654 34432222222211122222222221 379999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      ++++|.
T Consensus        89 i~~Ag~   94 (249)
T 3f9i_A           89 VCNAGI   94 (249)
T ss_dssp             EECCC-
T ss_pred             EECCCC
Confidence            999884

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.37  E-value=0.00081  Score=57.19  Aligned_cols=102  Identities=17%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          138 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      -+|+++||+|+ ++||.+.++.+...|+ +|+++++++++.+....-.+. ...|..+   .+-.+.+-+.. +++|+++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~-g~iDiLV   83 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDITD---SQRLQRLFEAL-PRLDVLV   83 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTTC---HHHHHHHHHHC-SCCSEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCCC---HHHHHHHHHhc-CCCCEEE
Confidence            36999999987 8999999999999999 999999988766543221111 1123322   33233333322 3899999


Q ss_pred             EcCCcH-----------------------HHHHHHHHHhh-cCCcEEEEeccCC
Q 020435          216 ECVGLA-----------------------SLVQEAYACCR-KGWGKTIVLGVDQ  245 (326)
Q Consensus       216 d~~g~~-----------------------~~~~~~~~~l~-~~~G~~v~~g~~~  245 (326)
                      +++|..                       ...+.+...++ .+ |++|.++...
T Consensus        84 NNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~  136 (242)
T 4b79_A           84 NNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG-GSILNIASMY  136 (242)
T ss_dssp             ECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-EEEEEECCGG
T ss_pred             ECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeecc
Confidence            998841                       12334455554 45 9999988643

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.34  E-value=0.00072  Score=62.10  Aligned_cols=110  Identities=17%  Similarity=0.177  Sum_probs=79.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      -.|.+|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|...         .++.+.+.     ..|+++.+
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~---------~sL~eal~-----~ADVVilt  273 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQV---------LLVEDVVE-----EAHIFVTT  273 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---------CCHHHHTT-----TCSEEEEC
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCee---------cCHHHHHh-----hCCEEEEC
Confidence            368999999999999999999999999 9999999887777666667532         12222221     58999988


Q ss_pred             CCcHHHHH-HHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEee
Q 020435          218 VGLASLVQ-EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  267 (326)
Q Consensus       218 ~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~  267 (326)
                      .+....+. ..+..++++ ..++.++.    ....++...+..+..++.+.
T Consensus       274 ~gt~~iI~~e~l~~MK~g-AIVINvgR----g~vEID~~~L~~~~~~~~~i  319 (436)
T 3h9u_A          274 TGNDDIITSEHFPRMRDD-AIVCNIGH----FDTEIQVAWLKANAKERVEV  319 (436)
T ss_dssp             SSCSCSBCTTTGGGCCTT-EEEEECSS----SGGGBCHHHHHHHCSEEEEE
T ss_pred             CCCcCccCHHHHhhcCCC-cEEEEeCC----CCCccCHHHHHhhcCceEee
Confidence            87655333 667888997 88887763    23456666655545554443

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.33  E-value=0.0015  Score=55.98  Aligned_cols=102  Identities=17%  Similarity=0.222  Sum_probs=66.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+. +++.. ..+  |..+  .+++.+.+.+...  +++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   83 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIAD--LNEIAVLGAAAGQTLGAI   83 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHSSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            5789999987 8999999999999999 9999999988877654 34432 222  2222  1222222222221  389


Q ss_pred             cEEEEcCCcH----------H---------------HHHHHHHHhhcCCcEEEEeccC
Q 020435          212 DYCFECVGLA----------S---------------LVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       212 d~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      |++++++|..          .               ..+.+...++++ |++|.++..
T Consensus        84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~  140 (255)
T 4eso_A           84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG-GSIVFTSSV  140 (255)
T ss_dssp             EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCG
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CEEEEECCh
Confidence            9999988741          0               122333445566 899998764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.28  E-value=0.0034  Score=53.78  Aligned_cols=81  Identities=21%  Similarity=0.288  Sum_probs=54.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEEEcCCCCC-CccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCG-DKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~vi~~~~~~-~~~~~~~i~~~~~--~g  210 (326)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+..    ++.|.+...-.-+.. .++..+.+.+...  ++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            5889999987 8999999999999999 999999998876543    344543222111111 1233333333332  38


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus        87 iDiLVNNAG~   96 (255)
T 4g81_D           87 VDILINNAGI   96 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999885

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.24  E-value=0.0014  Score=54.15  Aligned_cols=101  Identities=18%  Similarity=0.215  Sum_probs=71.2

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i  203 (326)
                      +.....+.++++||-.|+|. |..++.+++. +. +|++++.+++..+.+++    .|..   .++..+.   .+.   +
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~---~  117 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA---PAA---L  117 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT---TGG---G
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch---hhh---c
Confidence            44566788999999999876 8888888888 77 99999999998887654    3433   2333322   111   1


Q ss_pred             HHhcCCCccEEEEcCCc-HHHHHHHHHHhhcCCcEEEEecc
Q 020435          204 IDMTDGGADYCFECVGL-ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g~-~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..  .+.+|+|+...+. ...+..+.+.|+++ |+++....
T Consensus       118 ~~--~~~~D~v~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~  155 (204)
T 3njr_A          118 AD--LPLPEAVFIGGGGSQALYDRLWEWLAPG-TRIVANAV  155 (204)
T ss_dssp             TT--SCCCSEEEECSCCCHHHHHHHHHHSCTT-CEEEEEEC
T ss_pred             cc--CCCCCEEEECCcccHHHHHHHHHhcCCC-cEEEEEec
Confidence            11  1279999955442 32688999999998 99988754

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.20  E-value=0.0063  Score=52.05  Aligned_cols=79  Identities=25%  Similarity=0.283  Sum_probs=54.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhc--CCCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMT--DGGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~~g~  211 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|++++++.++.+.+ .+++.. ..+  |..+  .+++.+.+.+..  -+++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   83 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTR--QDSIDAAIAATVEHAGGL   83 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC--HHHHHHHHHHHHHHcCCC
Confidence            4789999987 9999999999999999 999999998877654 345432 222  2222  122333333322  1389


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        84 d~lv~~Ag~   92 (259)
T 4e6p_A           84 DILVNNAAL   92 (259)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999884

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.20  E-value=0.0034  Score=53.88  Aligned_cols=79  Identities=16%  Similarity=0.276  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CH--HHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC--cEEE--cCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV--TEFV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~--~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~--~~vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      .+.++||+|+ |.  +|.++++.+...|+ +|++++++++..+.+.+    .+.  -.++  |..+  .+++.+.+.+..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~   82 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN--DAEIETCFASIK   82 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS--SHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC--HHHHHHHHHHHH
Confidence            4789999986 66  99999999989999 99999988765444432    332  1222  2222  233333333332


Q ss_pred             C--CCccEEEEcCCc
Q 020435          208 D--GGADYCFECVGL  220 (326)
Q Consensus       208 ~--~g~d~v~d~~g~  220 (326)
                      .  +++|+++++++.
T Consensus        83 ~~~g~id~li~~Ag~   97 (266)
T 3oig_A           83 EQVGVIHGIAHCIAF   97 (266)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCeeEEEEcccc
Confidence            2  279999998873

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.19  E-value=0.0039  Score=53.40  Aligned_cols=78  Identities=18%  Similarity=0.234  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCC--cEEE--cCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--TEFV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g--~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~--~~vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      +|+++||+|+ |  +||.+.++.+...|+ +|+.++++++..+.+.    +++.  .+.+  |..+  .++..+.+.+..
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   81 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS--DEEVINGFEQIG   81 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC--HHHHHHHHHHHH
Confidence            4889999986 5  899999999999999 9999999987765543    3442  1222  3222  123333333322


Q ss_pred             C--CCccEEEEcCC
Q 020435          208 D--GGADYCFECVG  219 (326)
Q Consensus       208 ~--~g~d~v~d~~g  219 (326)
                      .  +++|++++++|
T Consensus        82 ~~~G~iD~lvnnAg   95 (256)
T 4fs3_A           82 KDVGNIDGVYHSIA   95 (256)
T ss_dssp             HHHCCCSEEEECCC
T ss_pred             HHhCCCCEEEeccc
Confidence            2  38999999877

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.17  E-value=0.0059  Score=52.33  Aligned_cols=79  Identities=22%  Similarity=0.266  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|..+++.+...|+ +|++++++.++.+.+.    +.+.. .++  |..+  .+++.+.+.+...  
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH--SDAIAAFATGVLAAH  104 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC--HHHHHHHHHHHHHhc
Confidence            4789999987 9999999999988999 8999999988766542    23432 222  2222  1223333333221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus       105 g~id~lv~~Ag~  116 (262)
T 3rkr_A          105 GRCDVLVNNAGV  116 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            279999999885

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.16  E-value=0.0063  Score=51.02  Aligned_cols=80  Identities=15%  Similarity=0.106  Sum_probs=52.3

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEEEcCCCCCCccHHHHHHHhcC--CCccEEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYCF  215 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~--~g~d~v~  215 (326)
                      +.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. +++....+..+-.+.+++.+.+.+...  +++|+++
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            568999987 9999999999999999 9999999988776543 333222332221011223333333221  3799999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      +++|.
T Consensus        84 ~~Ag~   88 (234)
T 2ehd_A           84 NNAGV   88 (234)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99873

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.15  E-value=0.0056  Score=50.18  Aligned_cols=103  Identities=15%  Similarity=0.134  Sum_probs=72.1

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~  204 (326)
                      +.....++++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++    .+.+  .++..+.   .+.   +.
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~---~~  104 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFA---PEG---LD  104 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCT---TTT---CT
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCCh---hhh---hh
Confidence            45667788999999999885 8888888888643499999999998887754    3432  2332221   110   10


Q ss_pred             HhcCCCccEEEEcCC---cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          205 DMTDGGADYCFECVG---LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .  .+.+|+|+....   -...+..+.+.|+++ |+++....
T Consensus       105 ~--~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  143 (204)
T 3e05_A          105 D--LPDPDRVFIGGSGGMLEEIIDAVDRRLKSE-GVIVLNAV  143 (204)
T ss_dssp             T--SCCCSEEEESCCTTCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred             c--CCCCCEEEECCCCcCHHHHHHHHHHhcCCC-eEEEEEec
Confidence            0  137999997654   345588899999998 99998754

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.15  E-value=0.0042  Score=51.62  Aligned_cols=99  Identities=8%  Similarity=0.024  Sum_probs=63.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHH-HcCCCEEEEEcCChh-HHHHHHhcCC-cEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          141 STVVIFGL-GSIGLAVAEGAR-LCGATRIIGVDVISE-KFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~-~~g~~~V~~~~~~~~-~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      .+|||+|+ |.+|..+++.+. ..|. +|++++++++ +.+.+...+. ..++..+-   .+ .+.+.+... ++|++|+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~---~d-~~~~~~~~~-~~d~vv~   79 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSF---QN-PGXLEQAVT-NAEVVFV   79 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCT---TC-HHHHHHHHT-TCSEEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCC---CC-HHHHHHHHc-CCCEEEE
Confidence            46999997 999999999888 8999 9999999988 6655532221 12332222   11 223333332 7999999


Q ss_pred             cCCcHHH-HHHHHHHhhcC-CcEEEEeccCC
Q 020435          217 CVGLASL-VQEAYACCRKG-WGKTIVLGVDQ  245 (326)
Q Consensus       217 ~~g~~~~-~~~~~~~l~~~-~G~~v~~g~~~  245 (326)
                      +++.... .+.++..++.. .+++|.++...
T Consensus        80 ~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           80 GAMESGSDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             cCCCCChhHHHHHHHHHhcCCCeEEEEeece
Confidence            9986321 34555555543 15888887643

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.15  E-value=0.0071  Score=53.06  Aligned_cols=79  Identities=27%  Similarity=0.331  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    ..+.. ..+  |..+  .+++.+.+.+...  
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH--LDEMVRLADEAFRLL  106 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhC
Confidence            5789999987 9999999999999999 9999999988766542    23432 222  2222  1223333333222  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|+++|.
T Consensus       107 g~id~lvnnAg~  118 (301)
T 3tjr_A          107 GGVDVVFSNAGI  118 (301)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            389999999883

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.14  E-value=0.0067  Score=52.42  Aligned_cols=79  Identities=18%  Similarity=0.207  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ ++++.. ..+  |..+  .+++.+.+.+...  +++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  103 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTD--PDSVRALFTATVEKFGRV  103 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999987 8999999999999999 999999998887654 344422 222  2222  1223333333222  389


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus       104 D~lVnnAg~  112 (272)
T 4dyv_A          104 DVLFNNAGT  112 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998874

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.13  E-value=0.0028  Score=55.26  Aligned_cols=79  Identities=25%  Similarity=0.200  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCc-EEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      ++.++||+|+ |++|.++++.+...|+ +|++++++.++.+.+. +++.. ..+..+- .+.+-.+.+.+.. +++|+++
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl-~d~~~v~~~~~~~-~~iD~lv   91 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDL-QDLSSVRRFADGV-SGADVLI   91 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCT-TCHHHHHHHHHTC-CCEEEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCC-CCHHHHHHHHHhc-CCCCEEE
Confidence            5789999987 9999999999999999 9999999998877654 34432 2222111 1122222222222 4899999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      +++|.
T Consensus        92 ~nAg~   96 (291)
T 3rd5_A           92 NNAGI   96 (291)
T ss_dssp             ECCCC
T ss_pred             ECCcC
Confidence            98884

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.12  E-value=0.0037  Score=53.33  Aligned_cols=74  Identities=14%  Similarity=0.042  Sum_probs=50.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH---hcCCc-EEEcCCCCCCccHHHHHHHhcC--CCccE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK---RFGVT-EFVNSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~---~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      +++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+.   ..+.+ ..+  +.   +++.+.+.+...  +++|+
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~--d~---~~v~~~~~~~~~~~g~iD~   75 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPM--SE---QEPAELIEAVTSAYGQVDV   75 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEEC--CC---CSHHHHHHHHHHHHSCCCE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEE--CH---HHHHHHHHHHHHHhCCCCE
Confidence            36899987 8999999999999999 9999999887665443   23432 222  22   334333333322  38999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +++++|.
T Consensus        76 lv~nAg~   82 (254)
T 1zmt_A           76 LVSNDIF   82 (254)
T ss_dssp             EEEECCC
T ss_pred             EEECCCc
Confidence            9998874

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.12  E-value=0.0042  Score=54.32  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=65.2

Q ss_pred             CCCEEEEEcc-CH--HHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcEEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~--~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .++++||+|+ |.  +|.++++.+...|+ +|++++++++..+.++    ..+....+  |..+  .+++.+.+.+... 
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  106 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVAD--AASIDAVFETLEKK  106 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCC--HHHHHHHHHHHHHh
Confidence            5789999986 56  99999999999999 8999998865444332    23432333  2222  1222222332221 


Q ss_pred             -CCccEEEEcCCcH-----------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          209 -GGADYCFECVGLA-----------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       209 -~g~d~v~d~~g~~-----------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       +++|++++++|..                             ...+.+...++++ |++|.++..
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~isS~  171 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG-GSILTLTYY  171 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-EEEEEEECG
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CEEEEEeeh
Confidence             3899999998742                             0234455566777 999998764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.11  E-value=0.0029  Score=51.41  Aligned_cols=100  Identities=20%  Similarity=0.239  Sum_probs=66.7

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCC---------CEEEEEcCChhHHHHHHhcCCcEEE-cCCCCCCccHHHHHHH
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGA---------TRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIID  205 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~---------~~V~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~  205 (326)
                      .++++++||.+|+|+ |..+..+++..+.         .+|++++.++...     ......+ ..+- ......+.+.+
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~-~~~~~~~~~~~   91 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADV-TDPRTSQRILE   91 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCT-TSHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEEEeccC-CCHHHHHHHHH
Confidence            367899999999988 8888999998763         3899999887431     1111233 2221 12334444555


Q ss_pred             hcCC-CccEEEE-----cCCc------------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          206 MTDG-GADYCFE-----CVGL------------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       206 ~~~~-g~d~v~d-----~~g~------------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..++ .+|+|+.     +.+.            ...+..+.+.|+++ |+++....
T Consensus        92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~  146 (196)
T 2nyu_A           92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKTW  146 (196)
T ss_dssp             HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence            5555 8999994     2232            14477789999998 99987643

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.11  E-value=0.0019  Score=55.29  Aligned_cols=80  Identities=20%  Similarity=0.258  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC--CCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~--~g~d~v~  215 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+..++++. ..+..+-.+.+++.+.+.+...  +++|+++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4679999987 9999999999999999 99999998877333444432 3332221011223333333221  3799999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      +++|.
T Consensus        83 ~~Ag~   87 (256)
T 2d1y_A           83 NNAAI   87 (256)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            98873

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.11  E-value=0.0025  Score=54.63  Aligned_cols=79  Identities=24%  Similarity=0.302  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc-----C-CcEEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----G-VTEFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~-----g-~~~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+. ++     + .-..+  |..+  .+++.+.+.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE--PGDIDRLFEKARD   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4679999987 9999999999998999 9999999987765432 22     3 11222  2222  1233333443333


Q ss_pred             C-CccEEEEcCCc
Q 020435          209 G-GADYCFECVGL  220 (326)
Q Consensus       209 ~-g~d~v~d~~g~  220 (326)
                      . ++|++++++|.
T Consensus        83 ~~gid~lv~~Ag~   95 (260)
T 2z1n_A           83 LGGADILVYSTGG   95 (260)
T ss_dssp             TTCCSEEEECCCC
T ss_pred             hcCCCEEEECCCC
Confidence            3 59999999883

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.10  E-value=0.0059  Score=52.94  Aligned_cols=79  Identities=19%  Similarity=0.367  Sum_probs=53.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. ..+  |..+  .++..+.+.+...  +++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  104 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSD--EQQIIAMVDACVAAFGGV  104 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTC--HHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4789999987 8999999999999999 999999998877654 345432 222  2222  1222222333221  289


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus       105 D~lvnnAg~  113 (277)
T 3gvc_A          105 DKLVANAGV  113 (277)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.10  E-value=0.0035  Score=54.45  Aligned_cols=102  Identities=23%  Similarity=0.288  Sum_probs=64.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-HH----HHHhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FE----IGKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-~~----~~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++.++ .+    .+++.+.+ ..+  |..+  .+++.+.+.+... 
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV--VEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4679999987 9999999999999999 89999887653 22    23344533 222  2222  1223233333221 


Q ss_pred             -CCccEEEEcCCcH----------H---------------HHHHHHHHhhcCCcEEEEeccC
Q 020435          209 -GGADYCFECVGLA----------S---------------LVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       209 -~g~d~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       +++|++++++|..          .               ..+.+...++.. |++|.++..
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~  165 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI  165 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEech
Confidence             3799999998741          0               123445555566 899998763

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.09  E-value=0.003  Score=53.77  Aligned_cols=81  Identities=23%  Similarity=0.337  Sum_probs=54.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcEEEcCCCCCCc-cHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDK-SVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~-~~~~~i~~~~~--~g~d~  213 (326)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ .+++.....-.-+..+. ++.+.+.+...  +++|+
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   83 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            4789999987 8999999999999999 999999998877654 44554322211121112 22222332221  28999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +++++|.
T Consensus        84 lv~nAg~   90 (247)
T 3rwb_A           84 LVNNASI   90 (247)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.08  E-value=0.0092  Score=51.27  Aligned_cols=79  Identities=20%  Similarity=0.350  Sum_probs=53.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----h-cCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----R-FGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~-~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++.++.+.+.    + .+.. +.+  |..+  .++..+.+.+... 
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE--PDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--TTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            4789999987 8999999999999999 9999999988765532    1 3432 222  3222  2333333333322 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        96 ~g~id~lv~nAg~  108 (266)
T 4egf_A           96 FGGLDVLVNNAGI  108 (266)
T ss_dssp             HTSCSEEEEECCC
T ss_pred             cCCCCEEEECCCc
Confidence             289999998874

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.08  E-value=0.0034  Score=52.60  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=67.7

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHH
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~--g~~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~  204 (326)
                      ...+.+++.+||-+|+|. |..++.+++.+  +. +|++++.+++..+.+++    .|..  .+- ...   .+..+.+.
T Consensus        50 ~~~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~-~~~---gda~~~l~  123 (221)
T 3dr5_A           50 ATTNGNGSTGAIAITPAA-GLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRVR-FLL---SRPLDVMS  123 (221)
T ss_dssp             HHSCCTTCCEEEEESTTH-HHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGEE-EEC---SCHHHHGG
T ss_pred             HhhCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcEE-EEE---cCHHHHHH
Confidence            334444566999999876 88888899876  45 99999999998777654    3432  221 111   33344333


Q ss_pred             HhcCCCccEEEEcCC-c--HHHHHHHHHHhhcCCcEEEEec
Q 020435          205 DMTDGGADYCFECVG-L--ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g-~--~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+..+.||+||-... .  ...+..+.+.|+++ |.++.-.
T Consensus       124 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~dn  163 (221)
T 3dr5_A          124 RLANDSYQLVFGQVSPMDLKALVDAAWPLLRRG-GALVLAD  163 (221)
T ss_dssp             GSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEE-EEEEETT
T ss_pred             HhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCC-cEEEEeC
Confidence            332448999984332 2  33578889999998 8887643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.08  E-value=0.00051  Score=56.63  Aligned_cols=132  Identities=18%  Similarity=0.269  Sum_probs=80.5

Q ss_pred             cccceEE-ecccceEEcCCCCCccccccccchhhhhhhhhhhhcc--cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEE
Q 020435           93 SFSEYTV-LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN--VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  169 (326)
Q Consensus        93 ~~a~~~~-v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~--~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~  169 (326)
                      .|.+|.. .+....+.+++.+++....-     .+... +.+...  +.++++||-.|+|. |..+..+++. +..+|++
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-----~~~~~-~~~~l~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~   88 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-----QTTQL-AMLGIERAMVKPLTVADVGTGS-GILAIAAHKL-GAKSVLA   88 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH-----HHHHH-HHHHHHHHCSSCCEEEEETCTT-SHHHHHHHHT-TCSEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC-----ccHHH-HHHHHHHhccCCCEEEEECCCC-CHHHHHHHHC-CCCEEEE
Confidence            5777777 67778888888876655421     11111 222222  56889999999876 6666677764 5449999


Q ss_pred             EcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHH---HHHHHHHHhhcCCcEEEE
Q 020435          170 VDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS---LVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       170 ~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~---~~~~~~~~l~~~~G~~v~  240 (326)
                      ++.+++..+.+++    .+..  .++..+-   .+       ...+.+|+|+.......   .+..+.+.|+++ |.++.
T Consensus        89 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~-------~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~g-G~l~~  157 (205)
T 3grz_A           89 TDISDESMTAAEENAALNGIYDIALQKTSL---LA-------DVDGKFDLIVANILAEILLDLIPQLDSHLNED-GQVIF  157 (205)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCCEEEESST---TT-------TCCSCEEEEEEESCHHHHHHHGGGSGGGEEEE-EEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEeccc---cc-------cCCCCceEEEECCcHHHHHHHHHHHHHhcCCC-CEEEE
Confidence            9999988877754    3432  3333222   11       12248999997655433   244556788998 99988


Q ss_pred             ecc
Q 020435          241 LGV  243 (326)
Q Consensus       241 ~g~  243 (326)
                      ...
T Consensus       158 ~~~  160 (205)
T 3grz_A          158 SGI  160 (205)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            643

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.08  E-value=0.0012  Score=55.73  Aligned_cols=102  Identities=18%  Similarity=0.230  Sum_probs=69.0

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHhc----C-CcEEEcCCCCCCccHHHHHHH
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF----G-VTEFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~~~~i~~  205 (326)
                      .+...+++|++||=.|+|+ |..+..+|+..|. ++|++++.+++..+.+++.    + ...+.. +.   .+. +.. .
T Consensus        70 l~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~-d~---~~p-~~~-~  142 (233)
T 4df3_A           70 LIELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILG-DA---RFP-EKY-R  142 (233)
T ss_dssp             CSCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEES-CT---TCG-GGG-T
T ss_pred             hhhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEE-ec---cCc-ccc-c
Confidence            3557799999999999877 8888899998874 3899999999988776542    2 222322 22   111 000 1


Q ss_pred             hcCCCccEEEEcCCcH----HHHHHHHHHhhcCCcEEEEe
Q 020435          206 MTDGGADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       206 ~~~~g~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ...+.+|+||.....+    ..+..+.+.|+++ |+++..
T Consensus       143 ~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpG-G~lvI~  181 (233)
T 4df3_A          143 HLVEGVDGLYADVAQPEQAAIVVRNARFFLRDG-GYMLMA  181 (233)
T ss_dssp             TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             cccceEEEEEEeccCChhHHHHHHHHHHhccCC-CEEEEE
Confidence            1123799988544432    2466778899998 998875

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.07  E-value=0.00043  Score=58.51  Aligned_cols=101  Identities=21%  Similarity=0.241  Sum_probs=71.5

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcE--EEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~  204 (326)
                      +.+...+.++++||.+|+| .|..+..+++..+. +|++++.+++..+.+++    .|...  ++..      +..   .
T Consensus        83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~------d~~---~  151 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG------DGS---K  151 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES------CGG---G
T ss_pred             HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEC------Ccc---c
Confidence            4556678899999999988 58888899988774 89999999988777654    34322  2221      110   1


Q ss_pred             HhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          205 DMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+..+ ++|+|+.+..-......+.+.|+++ |+++..-.
T Consensus       152 ~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~pg-G~lvi~~~  190 (235)
T 1jg1_A          152 GFPPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIPVG  190 (235)
T ss_dssp             CCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEEC
T ss_pred             CCCCCCCccEEEECCcHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            11223 5999997776655466888999998 99877643

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.07  E-value=0.0019  Score=51.59  Aligned_cols=104  Identities=22%  Similarity=0.213  Sum_probs=71.4

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EE-EcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF-VNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~v-i~~~~~~~~~~~~~i~  204 (326)
                      +.....+.++++||..|+|. |..+..+++..+..+|++++.+++..+.+++    .+.. .+ +..+.      .+.+.
T Consensus        17 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~------~~~~~   89 (178)
T 3hm2_A           17 AISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGA------PRAFD   89 (178)
T ss_dssp             HHHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCT------TGGGG
T ss_pred             HHHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecch------Hhhhh
Confidence            34556778899999999886 8888888888643399999999988887764    3443 22 22111      11111


Q ss_pred             HhcCCCccEEEEcCCc--HHHHHHHHHHhhcCCcEEEEecc
Q 020435          205 DMTDGGADYCFECVGL--ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      . ..+.+|+|+.....  ...++.+.+.|+++ |+++....
T Consensus        90 ~-~~~~~D~i~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  128 (178)
T 3hm2_A           90 D-VPDNPDVIFIGGGLTAPGVFAAAWKRLPVG-GRLVANAV  128 (178)
T ss_dssp             G-CCSCCSEEEECC-TTCTTHHHHHHHTCCTT-CEEEEEEC
T ss_pred             c-cCCCCCEEEECCcccHHHHHHHHHHhcCCC-CEEEEEee
Confidence            1 11489999965543  33688999999998 99987654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.07  E-value=0.0042  Score=54.80  Aligned_cols=100  Identities=12%  Similarity=0.202  Sum_probs=71.8

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc----CCc---EEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~i  203 (326)
                      +.+...+.++++||.+|+|. |..+..+++..|+ +|++++.+++..+.+++.    |..   .++..+      +.   
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d------~~---  150 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG------WE---  150 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC------GG---
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC------hH---
Confidence            45566788999999999877 8888888888788 999999999988877652    321   222211      11   


Q ss_pred             HHhcCCCccEEEEc-----CCc---HHHHHHHHHHhhcCCcEEEEeccC
Q 020435          204 IDMTDGGADYCFEC-----VGL---ASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       204 ~~~~~~g~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       ++ ++.+|+|+..     .+.   ...+..+.+.|+++ |.++.....
T Consensus       151 -~~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  196 (318)
T 2fk8_A          151 -DF-AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSSV  196 (318)
T ss_dssp             -GC-CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEEE
T ss_pred             -HC-CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC-cEEEEEEec
Confidence             11 2479999865     322   34577889999998 999887654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.07  E-value=0.0043  Score=54.97  Aligned_cols=78  Identities=13%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCC--c-EEE--cCCCCCCccHHHHHHHhc-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--T-EFV--NSKNCGDKSVSQIIIDMT-  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~--~-~vi--~~~~~~~~~~~~~i~~~~-  207 (326)
                      .+.+|||+|+ |+||..+++.+...|+ +|++++++.++.+.+.    ..+.  . .++  |..+  .+++.+.+.+.. 
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   83 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS--REGFKMAADEVEA   83 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4679999987 9999999999999999 9999999988766542    2232  1 222  2222  123333333332 


Q ss_pred             -CCCccEEEEcCC
Q 020435          208 -DGGADYCFECVG  219 (326)
Q Consensus       208 -~~g~d~v~d~~g  219 (326)
                       -+++|++|+++|
T Consensus        84 ~~g~id~lv~nAg   96 (319)
T 3ioy_A           84 RFGPVSILCNNAG   96 (319)
T ss_dssp             HTCCEEEEEECCC
T ss_pred             hCCCCCEEEECCC
Confidence             138999999988

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.06  E-value=0.0031  Score=54.03  Aligned_cols=78  Identities=18%  Similarity=0.329  Sum_probs=54.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEE-E--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF-V--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~v-i--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.+.. +  |..+  .++..+.+.+...  
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK--KKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5889999987 8999999999999999 999999998876643    34554322 2  2222  1223323333222  


Q ss_pred             CCccEEEEcCC
Q 020435          209 GGADYCFECVG  219 (326)
Q Consensus       209 ~g~d~v~d~~g  219 (326)
                      +++|++++++|
T Consensus        83 G~iDiLVNNAG   93 (254)
T 4fn4_A           83 SRIDVLCNNAG   93 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            38999999887

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.05  E-value=0.012  Score=44.68  Aligned_cols=77  Identities=18%  Similarity=0.289  Sum_probs=54.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      +.+|+|+|+|.+|..+++.+...|. +|+++++++++.+.+++ ++.. ++..+.   .+ .+.+.+..-.++|+|+.|.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~-~~~~d~---~~-~~~l~~~~~~~~d~vi~~~   77 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL-VINGDC---TK-IKTLEDAGIEDADMYIAVT   77 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE-EEESCT---TS-HHHHHHTTTTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcE-EEEcCC---CC-HHHHHHcCcccCCEEEEee
Confidence            4689999999999999999988898 89999999888777654 4653 332222   11 1223332123799999999


Q ss_pred             CcHH
Q 020435          219 GLAS  222 (326)
Q Consensus       219 g~~~  222 (326)
                      +...
T Consensus        78 ~~~~   81 (140)
T 1lss_A           78 GKEE   81 (140)
T ss_dssp             SCHH
T ss_pred             CCch
Confidence            8765

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.05  E-value=0.002  Score=54.92  Aligned_cols=79  Identities=16%  Similarity=0.212  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----c--C--CcEEE--cCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F--G--VTEFV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~--g--~~~vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+    .  +  ....+  |..+  .++..+.+.+..
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   82 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD--CTKADTEIKDIH   82 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC--HHHHHHHHHHHH
Confidence            4679999987 8999999999988999 99999999887665432    1  2  11222  2222  122333333322


Q ss_pred             C--CCccEEEEcCCc
Q 020435          208 D--GGADYCFECVGL  220 (326)
Q Consensus       208 ~--~g~d~v~d~~g~  220 (326)
                      .  +++|++++++|.
T Consensus        83 ~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           83 QKYGAVDILVNAAAM   97 (250)
T ss_dssp             HHHCCEEEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence            2  389999999884

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.05  E-value=0.00074  Score=56.88  Aligned_cols=101  Identities=15%  Similarity=0.180  Sum_probs=69.3

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHH
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~  204 (326)
                      ......++++||.+|+| .|..+..+++.. +. +|++++.+++..+.+++    .|..   .++..+      ..+.+.
T Consensus        48 ~~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~~~  119 (233)
T 2gpy_A           48 HLLKMAAPARILEIGTA-IGYSAIRMAQALPEA-TIVSIERDERRYEEAHKHVKALGLESRIELLFGD------ALQLGE  119 (233)
T ss_dssp             HHHHHHCCSEEEEECCT-TSHHHHHHHHHCTTC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC------GGGSHH
T ss_pred             HHHhccCCCEEEEecCC-CcHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC------HHHHHH
Confidence            44456688999999988 588888899887 45 99999999998887764    3432   233222      222222


Q ss_pred             Hhc-CCCccEEEEcCCc---HHHHHHHHHHhhcCCcEEEEec
Q 020435          205 DMT-DGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       205 ~~~-~~g~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ... .+.+|+|+.....   ...+..+.+.|+++ |.++...
T Consensus       120 ~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  160 (233)
T 2gpy_A          120 KLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPG-GLILSDN  160 (233)
T ss_dssp             HHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEE-EEEEEET
T ss_pred             hcccCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence            222 2489999865543   44577888999998 9988764

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.04  E-value=0.0067  Score=52.07  Aligned_cols=102  Identities=23%  Similarity=0.231  Sum_probs=63.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc-----CCc-EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVT-EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~-----g~~-~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+. ++     +.. ..+  |..+  .+++.+.+.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   82 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC--HHHHHHHHHHHHH
Confidence            4679999987 9999999999999999 9999999887655432 22     111 222  2222  1223333333221


Q ss_pred             --CCccEEEEcCCcHH-----------------HHHHHHHHhhc-----CCcEEEEeccC
Q 020435          209 --GGADYCFECVGLAS-----------------LVQEAYACCRK-----GWGKTIVLGVD  244 (326)
Q Consensus       209 --~g~d~v~d~~g~~~-----------------~~~~~~~~l~~-----~~G~~v~~g~~  244 (326)
                        +++|++++++|...                 ..+.++..+..     . |++|.++..
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~-g~iv~isS~  141 (267)
T 2gdz_A           83 HFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEG-GIIINMSSL  141 (267)
T ss_dssp             HHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC-EEEEEECCG
T ss_pred             HcCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCC-CEEEEeCCc
Confidence              37999999987410                 12334445543     5 889988753

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.04  E-value=0.0028  Score=53.81  Aligned_cols=79  Identities=22%  Similarity=0.264  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEE-EcCCCCCCccHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++++..+ .|..+  .+++.+.+.+...  +++|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~id~   80 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHLGRLDG   80 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            3678999987 9999999999999999 9999999988776543 3453222 23222  1223333333221  37999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +++++|.
T Consensus        81 lvn~Ag~   87 (245)
T 1uls_A           81 VVHYAGI   87 (245)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999883

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.03  E-value=0.0014  Score=55.39  Aligned_cols=105  Identities=14%  Similarity=0.095  Sum_probs=70.1

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhc
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ...+..++++||.+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|...-+....   .+..+.+.+..
T Consensus        54 ~l~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~~~~~~  129 (239)
T 2hnk_A           54 ILTKISGAKRIIEIGTFT-GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL---GSALETLQVLI  129 (239)
T ss_dssp             HHHHHHTCSEEEEECCTT-CHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHH
T ss_pred             HHHHhhCcCEEEEEeCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE---CCHHHHHHHHH
Confidence            334566789999999874 888889999873 2399999999988877654    34322111111   23333333221


Q ss_pred             --------------C-CCccEEEEcCCcH---HHHHHHHHHhhcCCcEEEEec
Q 020435          208 --------------D-GGADYCFECVGLA---SLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 --------------~-~g~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g  242 (326)
                                    + +.+|+|+......   ..+..+.+.|+++ |.++...
T Consensus       130 ~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  181 (239)
T 2hnk_A          130 DSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG-GLLIADN  181 (239)
T ss_dssp             HCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             hhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence                          2 5799999765543   4468889999998 9988753

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.02  E-value=0.0019  Score=55.10  Aligned_cols=103  Identities=15%  Similarity=0.085  Sum_probs=72.8

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHhc-----CCcE--EEcCCCCCCccHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF-----GVTE--FVNSKNCGDKSVSQI  202 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~~-----g~~~--vi~~~~~~~~~~~~~  202 (326)
                      +.....+.++++||..|+|. |..+..+++..+ ..+|++++.+++..+.+++.     |.+.  ++..+      +.+.
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d------~~~~  160 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGK------LEEA  160 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESC------GGGC
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECc------hhhc
Confidence            45667788999999999886 888888998853 23999999999988877653     5322  22221      1110


Q ss_pred             HHHhcCCCccEEEEcCCcH-HHHHHHHHHhhcCCcEEEEecc
Q 020435          203 IIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       203 i~~~~~~g~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                        .+..+.+|+|+.....+ ..+..+.+.|+++ |.++.+..
T Consensus       161 --~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  199 (258)
T 2pwy_A          161 --ELEEAAYDGVALDLMEPWKVLEKAALALKPD-RFLVAYLP  199 (258)
T ss_dssp             --CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             --CCCCCCcCEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence              01123799999666554 5688999999998 99988753

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.02  E-value=0.006  Score=50.37  Aligned_cols=93  Identities=14%  Similarity=0.220  Sum_probs=63.2

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      +|||+|+ |.+|..+++.+...|. +|+++++++++.+.+. .++. ++..+- .+.+. +   .+  +++|+||++++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~-~~~~D~-~d~~~-~---~~--~~~d~vi~~ag~   71 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDIN-ILQKDI-FDLTL-S---DL--SDQNVVVDAYGI   71 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSE-EEECCG-GGCCH-H---HH--TTCSEEEECCCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCe-EEeccc-cChhh-h---hh--cCCCEEEECCcC
Confidence            7999997 9999999999999998 9999999988877654 3443 332221 01222 1   11  279999999986


Q ss_pred             H--------HHHHHHHHHhhcC-CcEEEEeccC
Q 020435          221 A--------SLVQEAYACCRKG-WGKTIVLGVD  244 (326)
Q Consensus       221 ~--------~~~~~~~~~l~~~-~G~~v~~g~~  244 (326)
                      .        .....+++.++.. .++++.++..
T Consensus        72 ~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           72 SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             STTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            3        2245566666653 1688887653

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.02  E-value=0.006  Score=53.24  Aligned_cols=79  Identities=22%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-HHH----HHhcCCcE-EE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEI----GKRFGVTE-FV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-~~~----~~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++ .+.    +++.+... .+  |..+  .+++.+.+.+... 
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD--EQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4789999987 9999999999999999 99999987653 222    23344332 22  2222  1222223333222 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus       123 ~g~iD~lvnnAg~  135 (291)
T 3ijr_A          123 LGSLNILVNNVAQ  135 (291)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             389999998763

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.01  E-value=0.0087  Score=51.64  Aligned_cols=103  Identities=24%  Similarity=0.339  Sum_probs=63.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC-hhHHHH----HHhcCCcE-EEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEI----GKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~-~~~~~~----~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .++++||+|+ |++|.++++.+...|+ +|+++++. .++.+.    +++.+... .+..+-.+.+++.+.+.+...  +
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5789999987 8999999999999999 88888544 344333    23345332 222221011223333333322  2


Q ss_pred             CccEEEEcCCcH-------------------------HHHHHHHHHhhcCCcEEEEecc
Q 020435          210 GADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       210 g~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ++|++++++|..                         ...+.+...+++. |++|.++.
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS  166 (271)
T 3v2g_A          109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGS  166 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence            899999998741                         1234455566677 99999875

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.00  E-value=0.0041  Score=51.61  Aligned_cols=96  Identities=15%  Similarity=0.103  Sum_probs=63.1

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      +|||+|+ |.+|..+++.+...|. +|+++++++++.+.+  .++ .++..+-   .+..+.+.+... ++|+||++++.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~-~~~~~D~---~d~~~~~~~~~~-~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNV-KAVHFDV---DWTPEEMAKQLH-GMDAIINVSGS   73 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTE-EEEECCT---TSCHHHHHTTTT-TCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCc-eEEEecc---cCCHHHHHHHHc-CCCEEEECCcC
Confidence            7999997 9999999999998998 999999998765433  122 3333322   221344555444 79999999985


Q ss_pred             HH---------HHHHHHHHhhcC-CcEEEEeccCC
Q 020435          221 AS---------LVQEAYACCRKG-WGKTIVLGVDQ  245 (326)
Q Consensus       221 ~~---------~~~~~~~~l~~~-~G~~v~~g~~~  245 (326)
                      ..         ....+++.++.. .+++|.++...
T Consensus        74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  108 (219)
T 3dqp_A           74 GGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF  108 (219)
T ss_dssp             TTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence            31         133444444443 14888887644

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.98  E-value=0.0075  Score=50.86  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEEEcCCCCCCccHHHHHHHhcC--CCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~--~g~d~v  214 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. ++....++..+- .+.   +.+.+...  +++|++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~-~~~---~~~~~~~~~~~~id~v   80 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDL-GDW---EATERALGSVGPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCT-TCH---HHHHHHHTTCCCCCEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeC-CCH---HHHHHHHHHcCCCCEE
Confidence            4689999987 9999999999999999 9999999988776543 332223332221 112   23333332  279999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      |+++|.
T Consensus        81 i~~Ag~   86 (244)
T 3d3w_A           81 VNNAAV   86 (244)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999873

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.97  E-value=0.0074  Score=52.29  Aligned_cols=96  Identities=15%  Similarity=0.081  Sum_probs=64.7

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHhcCCcEEE-cCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          142 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      +|||+|+ |.+|..+++.+... |. +|+++++++++.+.+...++..+. |..+      .+.+.+... ++|+||.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~d------~~~l~~~~~-~~d~vi~~a   73 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYFN------QESMVEAFK-GMDTVVFIP   73 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTTC------HHHHHHHTT-TCSEEEECC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCCC------HHHHHHHHh-CCCEEEEeC
Confidence            6999997 99999999998877 88 899999998876655545553322 2222      234444443 799999998


Q ss_pred             CcH-------HHHHHHHHHhhcC-CcEEEEeccCC
Q 020435          219 GLA-------SLVQEAYACCRKG-WGKTIVLGVDQ  245 (326)
Q Consensus       219 g~~-------~~~~~~~~~l~~~-~G~~v~~g~~~  245 (326)
                      +..       .....+++.++.. -+++|.++...
T Consensus        74 ~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           74 SIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            852       2244556666654 13788887654

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.96  E-value=0.0033  Score=54.28  Aligned_cols=79  Identities=19%  Similarity=0.261  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEEE--cCCCCCCccHHHHHHHhcC--CCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFV--NSKNCGDKSVSQIIIDMTD--GGAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi--~~~~~~~~~~~~~i~~~~~--~g~d  212 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+. ++.....+  |..+  .+++.+.+.+...  +++|
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD   84 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ--EDDVKTLVSETIRRFGRLD   84 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCC--HHHHHHHHHHHHHHcCCCC
Confidence            4789999987 9999999999999999 9999999988776543 33322233  2222  1223333332221  3799


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      ++++++|.
T Consensus        85 ~lv~nAg~   92 (270)
T 1yde_A           85 CVVNNAGH   92 (270)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998863

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.96  E-value=0.0015  Score=55.81  Aligned_cols=101  Identities=14%  Similarity=0.141  Sum_probs=69.4

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHHh
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ....++.+||-+|+|. |..+..+++.++ ..+|++++.+++..+.+++    .|..   .++.      .+..+.+...
T Consensus        59 ~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~------~d~~~~l~~~  131 (248)
T 3tfw_A           59 VRLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE------GPALQSLESL  131 (248)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE------SCHHHHHHTC
T ss_pred             HhhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE------cCHHHHHHhc
Confidence            3566789999999876 778888888764 3399999999998877654    3532   2222      3344444444


Q ss_pred             cCC-CccEEE-EcCC--cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          207 TDG-GADYCF-ECVG--LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       207 ~~~-g~d~v~-d~~g--~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ... .+|+|+ |+..  ....+..+.+.|+++ |.++.-..
T Consensus       132 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~~~~  171 (248)
T 3tfw_A          132 GECPAFDLIFIDADKPNNPHYLRWALRYSRPG-TLIIGDNV  171 (248)
T ss_dssp             CSCCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEECC
T ss_pred             CCCCCeEEEEECCchHHHHHHHHHHHHhcCCC-eEEEEeCC
Confidence            333 899998 3322  234578889999998 98877543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.96  E-value=0.0025  Score=55.15  Aligned_cols=79  Identities=22%  Similarity=0.334  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCC-c--EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV-T--EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~-~--~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.    ..+. .  .++  |..+  .+++.+.+.++..
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  107 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIRS  107 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            4689999987 9999999999998999 9999999987765432    2331 1  222  2222  1223333332221


Q ss_pred             --CCccEEEEcCCc
Q 020435          209 --GGADYCFECVGL  220 (326)
Q Consensus       209 --~g~d~v~d~~g~  220 (326)
                        +++|++|+++|.
T Consensus       108 ~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          108 QHSGVDICINNAGL  121 (279)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             hCCCCCEEEECCCC
Confidence              379999999873

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.95  E-value=0.0038  Score=53.37  Aligned_cols=79  Identities=20%  Similarity=0.228  Sum_probs=54.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|+++++++++.+.+. +++.. ..+  |..+  .+++.+.+.+...  +++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   84 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISK--EADVDAAVEAALSKFGKV   84 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHhcCCC
Confidence            4689999987 8999999999999999 9999999998877653 45532 222  2222  1223333333222  279


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        85 d~li~~Ag~   93 (261)
T 3n74_A           85 DILVNNAGI   93 (261)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999998873

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.94  E-value=0.0036  Score=53.87  Aligned_cols=78  Identities=27%  Similarity=0.302  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hc--CCc-EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RF--GVT-EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~--g~~-~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.  +.. ..+  |..+  .+++.+.+.+...
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   88 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD--EAQVEAYVTATTE   88 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4689999987 9999999999988999 9999999987765432    11  332 222  2222  1223333333221


Q ss_pred             --CCccEEEEcCC
Q 020435          209 --GGADYCFECVG  219 (326)
Q Consensus       209 --~g~d~v~d~~g  219 (326)
                        +++|++++++|
T Consensus        89 ~~g~id~lv~nAg  101 (267)
T 1iy8_A           89 RFGRIDGFFNNAG  101 (267)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence              37999999887

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.94  E-value=0.0024  Score=54.69  Aligned_cols=78  Identities=23%  Similarity=0.290  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+    .+.. ..+  |..+  .+++.+.+.+...  
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN--TDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4679999987 8999999999999999 99999999887765432    2322 222  2222  1223333333222  


Q ss_pred             CCccEEEEcCC
Q 020435          209 GGADYCFECVG  219 (326)
Q Consensus       209 ~g~d~v~d~~g  219 (326)
                      +++|++++++|
T Consensus        82 g~id~lv~nAg   92 (257)
T 3imf_A           82 GRIDILINNAA   92 (257)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            38999999988

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.93  E-value=0.0039  Score=52.99  Aligned_cols=79  Identities=22%  Similarity=0.288  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    ..+.. ..+  |..+  .+++.+.+.+...  
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD--RQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4679999987 9999999999999999 9999999987765432    23432 222  2222  1223333333221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        83 g~id~lv~nAg~   94 (247)
T 2jah_A           83 GGLDILVNNAGI   94 (247)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            389999998873

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.93  E-value=0.0032  Score=53.61  Aligned_cols=81  Identities=25%  Similarity=0.240  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      .+.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+.. ..+..+-.+.+++.+.+.+...  ++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGG   86 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4789999987 9999999999999999 8999999988766543    22332 2222211011222222332221  28


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus        87 id~li~~Ag~   96 (253)
T 3qiv_A           87 IDYLVNNAAI   96 (253)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999874

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.92  E-value=0.0032  Score=54.56  Aligned_cols=79  Identities=23%  Similarity=0.286  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    ..+.. ..+  |..+  .+++.+.+.+...  
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ--PDQVRGMLDQMTGEL  107 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 9999999999999999 9999999887765432    23322 222  2222  1223333333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus       108 g~iD~lvnnAg~  119 (276)
T 3r1i_A          108 GGIDIAVCNAGI  119 (276)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            289999998884

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.92  E-value=0.0038  Score=53.54  Aligned_cols=79  Identities=30%  Similarity=0.421  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc----CCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~----g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. ++    +.. ..+  |..+  .+++.+.+.+... 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT--PEGVDAVVESVRSS   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4679999987 9999999999999999 9999999987765432 22    432 222  2222  1223333332221 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        83 ~g~id~lv~~Ag~   95 (263)
T 3ai3_A           83 FGGADILVNNAGT   95 (263)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             279999999873

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.92  E-value=0.0031  Score=53.88  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=53.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+ ++++.. ..+  |..+  .+++.+.+.+...  +++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4679999987 9999999999999999 999999998876654 334422 222  2222  1233333333322  279


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        81 D~lv~nAg~   89 (254)
T 1hdc_A           81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998873

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.91  E-value=0.0025  Score=55.93  Aligned_cols=100  Identities=16%  Similarity=0.259  Sum_probs=72.9

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i  203 (326)
                      +.+...++++++||-+|+|. |..+..+++..|. +|++++.+++..+.+++    .|..   .++..      ++.   
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~------d~~---  132 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ------GWE---  132 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC------CGG---
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC------CHH---
Confidence            45667788999999999886 8888899998887 99999999998877754    3422   22222      221   


Q ss_pred             HHhcCCCccEEEEcCCc---------------HHHHHHHHHHhhcCCcEEEEeccC
Q 020435          204 IDMTDGGADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       ++ .+.+|+|+....-               ...+..+.+.|+++ |.+++....
T Consensus       133 -~~-~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~  185 (302)
T 3hem_A          133 -EF-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT  185 (302)
T ss_dssp             -GC-CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEEE
T ss_pred             -Hc-CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEEe
Confidence             12 3489999864321               24578899999998 999987754

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.91  E-value=0.0025  Score=54.74  Aligned_cols=79  Identities=19%  Similarity=0.242  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcC-Cc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFG-VT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g-~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.+ .. ..+  |..+  .+++.+.+.+... 
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD--RAQCDALAGRAVEE   85 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4789999987 9999999999999999 999999998876543    2233 11 222  2222  1222222332222 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        86 ~g~id~lvnnAg~   98 (262)
T 3pk0_A           86 FGGIDVVCANAGV   98 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence             289999999883

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.91  E-value=0.0042  Score=53.87  Aligned_cols=79  Identities=22%  Similarity=0.214  Sum_probs=54.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcE-EE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ .+++... .+  |..+  .+++.+.+.+...  +++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSS--AKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4789999987 9999999999999999 999999998877654 3345332 22  2222  1223223333222  379


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus       103 D~lv~nAg~  111 (277)
T 4dqx_A          103 DVLVNNAGF  111 (277)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999883

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.91  E-value=0.00072  Score=56.09  Aligned_cols=101  Identities=17%  Similarity=0.233  Sum_probs=71.6

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcC--CCEEEEEcCChhHHHHHHh----cCCcE--EEcCCCCCCccHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQI  202 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g--~~~V~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~  202 (326)
                      +.+...+.++++||.+|+|. |..+..+++..+  . +|++++.+++..+.+++    .+.+.  ++..+      ..+ 
T Consensus        69 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d------~~~-  139 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDG-LVVSIERIPELAEKAERTLRKLGYDNVIVIVGD------GTL-  139 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC------GGG-
T ss_pred             HHHhhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC------ccc-
Confidence            45566788999999999884 888888998876  5 89999999988877654    34322  22211      111 


Q ss_pred             HHHhc-CCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          203 IIDMT-DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       203 i~~~~-~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                        ... .+.+|+|+....-......+.+.|+++ |+++..-.
T Consensus       140 --~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~lv~~~~  178 (215)
T 2yxe_A          140 --GYEPLAPYDRIYTTAAGPKIPEPLIRQLKDG-GKLLMPVG  178 (215)
T ss_dssp             --CCGGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred             --CCCCCCCeeEEEECCchHHHHHHHHHHcCCC-cEEEEEEC
Confidence              111 237999998766655457888999998 99887743

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.91  E-value=0.0036  Score=53.86  Aligned_cols=79  Identities=19%  Similarity=0.247  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +++.. ..+  |..+  .+++.+.+.+...  +++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   81 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD--PKAVEAVFAEALEEFGRL   81 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC--HHHHHHHHHHHHHHcCCC
Confidence            4679999987 9999999999999999 9999999988776543 34322 222  2222  1223233333221  379


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        82 D~lvnnAg~   90 (263)
T 2a4k_A           82 HGVAHFAGV   90 (263)
T ss_dssp             CEEEEGGGG
T ss_pred             cEEEECCCC
Confidence            999999874

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.90  E-value=0.011  Score=49.02  Aligned_cols=92  Identities=15%  Similarity=0.174  Sum_probs=62.8

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEE-cCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      +|||+|+ |.+|..+++.+...|. +|+++++++++.+.+...++..+. |..+   .+. +   .+  +++|+||++++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~d---~~~-~---~~--~~~d~vi~~ag   71 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPLV---LTE-A---DL--DSVDAVVDALS   71 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGGG---CCH-H---HH--TTCSEEEECCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEeccccc---ccH-h---hc--ccCCEEEECCc
Confidence            6999997 9999999999998998 999999999887766544553322 2222   222 1   11  27999999998


Q ss_pred             cH----------HHHHHHHHHhhcCCcEEEEecc
Q 020435          220 LA----------SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       220 ~~----------~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..          .....+++.++...+++|.++.
T Consensus        72 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           72 VPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             CCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             cCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence            62          2234555555543267888753

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.90  E-value=0.0066  Score=50.97  Aligned_cols=78  Identities=22%  Similarity=0.226  Sum_probs=51.0

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-----hcCCcE-EE--cCCCCCCccHHHHHHHhcC--
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-----RFGVTE-FV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-----~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      +.++||+|+ |++|.++++.+...|+ +|+.++++.++.+.+.     ..+... .+  |..+  .+++.+.+.+...  
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK--AESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC--HHHHHHHHHHHHHhc
Confidence            578999987 8999999999999999 8999999988765532     234322 22  2222  1122221111111  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        79 g~id~li~~Ag~   90 (235)
T 3l77_A           79 GDVDVVVANAGL   90 (235)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            379999999874

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.90  E-value=0.0035  Score=52.92  Aligned_cols=78  Identities=13%  Similarity=0.235  Sum_probs=52.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCc-EEE--cCCCCCCccHHHHHHHhcC--CCcc
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGAD  212 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~d  212 (326)
                      +.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+ ++.. ..+  |..+  .+++.+.+.+...  +++|
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~id   79 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAH--HEDVDVAFAAAVEWGGLPE   79 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTS--HHHHHHHHHHHHHHHCSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCC--HHHHHHHHHHHHHhcCCCc
Confidence            578999987 8999999999999999 99999999888766432 3321 122  2222  1223333333221  3899


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      ++++++|.
T Consensus        80 ~lvnnAg~   87 (235)
T 3l6e_A           80 LVLHCAGT   87 (235)
T ss_dssp             EEEEECCC
T ss_pred             EEEECCCC
Confidence            99998884

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.90  E-value=0.0052  Score=51.82  Aligned_cols=75  Identities=19%  Similarity=0.242  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-c-CCcEEEcCCCCCCccHHHHHHHhcCC--CccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F-GVTEFVNSKNCGDKSVSQIIIDMTDG--GADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~-g~~~vi~~~~~~~~~~~~~i~~~~~~--g~d~  213 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+ . +. +++..+- .+.   +.+.+...+  ++|+
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~D~-~~~---~~~~~~~~~~~~id~   79 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGI-EPVCVDL-GDW---DATEKALGGIGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTC-EEEECCT-TCH---HHHHHHHTTCCCCSE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCC-CcEEecC-CCH---HHHHHHHHHcCCCCE
Confidence            4679999987 9999999999999999 99999999887665433 3 33 3332221 112   233333323  7999


Q ss_pred             EEEcCC
Q 020435          214 CFECVG  219 (326)
Q Consensus       214 v~d~~g  219 (326)
                      ++++++
T Consensus        80 vi~~Ag   85 (244)
T 1cyd_A           80 LVNNAA   85 (244)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999988

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.89  E-value=0.0067  Score=52.26  Aligned_cols=101  Identities=19%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHHH----HhcCCcE-EE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+.+ .++++..+.+    +..+... .+  |..+  .+++.+.+.+... 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD--PAAVRRLFATAEEA  102 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 8999999999988999 88877 4455444433    3344322 22  2222  1222333333222 


Q ss_pred             -CCccEEEEcCCcH-------------------------HHHHHHHHHhhcCCcEEEEecc
Q 020435          209 -GGADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       209 -~g~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       +++|++++++|..                         ...+.+...++++ |++|.++.
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS  162 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-GRIINMST  162 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CeEEEEeC
Confidence             3899999998741                         1233455566677 89998875

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.89  E-value=0.0089  Score=50.95  Aligned_cols=80  Identities=19%  Similarity=0.171  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++ ++++.+.+    +..+.. .++..+-.+.+++.+.+.+...  +
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4679999987 9999999999988999 8999998 76655433    223432 2222211001223333333221  2


Q ss_pred             CccEEEEcCC
Q 020435          210 GADYCFECVG  219 (326)
Q Consensus       210 g~d~v~d~~g  219 (326)
                      ++|++|++++
T Consensus        85 ~id~li~~Ag   94 (261)
T 1gee_A           85 KLDVMINNAG   94 (261)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999887

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.89  E-value=0.0038  Score=54.33  Aligned_cols=79  Identities=16%  Similarity=0.170  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ++.++||+|+ |++|.++++.+...|+ +|++++++.++.+.+.+    .+.. ..+  |..+  .+++.+.+.+...  
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD--ELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4789999987 8999999999999999 99999999887665432    2322 222  2222  1223333333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus       104 g~iD~lVnnAg~  115 (283)
T 3v8b_A          104 GHLDIVVANAGI  115 (283)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            389999998884

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.89  E-value=0.014  Score=49.93  Aligned_cols=79  Identities=15%  Similarity=0.155  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+.+ .+++++.+.+    ++.+.. ..+  |..+  .+++.+.+.+... 
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   79 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ--PAKIKEMFQQIDET   79 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 9999999999999999 88886 7887765543    233432 222  2222  1223333333221 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        80 ~g~id~lv~nAg~   92 (258)
T 3oid_A           80 FGRLDVFVNNAAS   92 (258)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             389999999873

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.88  E-value=0.009  Score=51.45  Aligned_cols=105  Identities=19%  Similarity=0.253  Sum_probs=65.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHH----HHhcCCcE-EEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~----~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|+++++ +.++.+.    +++.+.+. .+.-+-.+.+++.+.+.+...  +
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   95 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG   95 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4789999987 8999999999999999 8888765 4444333    33445332 222111011223333333322  2


Q ss_pred             CccEEEEcCCcH-------------------------HHHHHHHHHhhcCCcEEEEeccCC
Q 020435          210 GADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       210 g~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      ++|++++++|..                         ...+.++..+.++ |++|.++...
T Consensus        96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~  155 (270)
T 3is3_A           96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG-GRIVLTSSNT  155 (270)
T ss_dssp             CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCTT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CeEEEEeCch
Confidence            899999988841                         1234556667777 9999988643

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.88  E-value=0.0034  Score=54.07  Aligned_cols=80  Identities=21%  Similarity=0.255  Sum_probs=54.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcE-EEcCCCCCCc-cHHHHHHHhcC--CCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-FVNSKNCGDK-SVSQIIIDMTD--GGAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~-vi~~~~~~~~-~~~~~i~~~~~--~g~d  212 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++++... .+..+- .+. ++.+.+.+...  +++|
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-~d~~~v~~~~~~~~~~~g~iD  103 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANL-SDRKSIKQLAEVAEREMEGID  103 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCT-TSHHHHHHHHHHHHHHHTSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeec-CCHHHHHHHHHHHHHHcCCCC
Confidence            4789999987 9999999999999999 999999998887654 4455432 222111 112 22222332222  3899


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      ++++++|.
T Consensus       104 ~lvnnAg~  111 (266)
T 3grp_A          104 ILVNNAGI  111 (266)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.88  E-value=0.0058  Score=54.85  Aligned_cols=99  Identities=17%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCC-----------CCcc--HHHHHH
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC-----------GDKS--VSQIII  204 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~-----------~~~~--~~~~i~  204 (326)
                      -.|++|.|.|.|.+|+.+++.++.+|+ +|++.+.++++.+..++++++.+ +.+++           ...+  -.+.+.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh
Confidence            468999999999999999999999999 99988888766555565665432 11100           0010  011222


Q ss_pred             HhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          205 DMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+   +.++|++++..+...+.+...|..+ |.++.-+
T Consensus       251 ~l---k~~iVie~AN~p~t~~eA~~~L~~~-gIlv~Pd  284 (355)
T 1c1d_A          251 TL---DCSVVAGAANNVIADEAASDILHAR-GILYAPD  284 (355)
T ss_dssp             HC---CCSEECCSCTTCBCSHHHHHHHHHT-TCEECCH
T ss_pred             hC---CCCEEEECCCCCCCCHHHHHHHHhC-CEEEECC
Confidence            22   4677777777665333556777776 6665433

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.88  E-value=0.0051  Score=52.29  Aligned_cols=79  Identities=24%  Similarity=0.257  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh-hHHH-HHHhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE-IGKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~-~~~~-~~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++ ++.+ .+++.+.. ..+  |..+  .+++.+.+.+...  ++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~   82 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ--PGDVEAFGKQVISTFGR   82 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHHHHHcCC
Confidence            4679999987 9999999999999999 999999887 6554 34455532 222  2222  1223333333221  38


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus        83 id~lv~nAg~   92 (249)
T 2ew8_A           83 CDILVNNAGI   92 (249)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999998873

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.87  E-value=0.0011  Score=54.80  Aligned_cols=101  Identities=16%  Similarity=0.061  Sum_probs=70.2

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~  204 (326)
                      +.+...++++++||-+|+|. |..+..+++. +. +|++++.+++..+.+++    .+..  .++..+.      .+...
T Consensus        69 ~~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~------~~~~~  139 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDG------WQGWQ  139 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG------GGCCG
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCc------ccCCc
Confidence            45667788999999999874 7778888887 66 99999999998877654    3432  2332221      11000


Q ss_pred             HhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          205 DMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                        ..+.+|+|+....-......+.+.|+++ |+++..-.
T Consensus       140 --~~~~~D~i~~~~~~~~~~~~~~~~L~pg-G~lv~~~~  175 (210)
T 3lbf_A          140 --ARAPFDAIIVTAAPPEIPTALMTQLDEG-GILVLPVG  175 (210)
T ss_dssp             --GGCCEEEEEESSBCSSCCTHHHHTEEEE-EEEEEEEC
T ss_pred             --cCCCccEEEEccchhhhhHHHHHhcccC-cEEEEEEc
Confidence              1238999998665555456788999998 99887643

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.87  E-value=0.0071  Score=54.69  Aligned_cols=94  Identities=18%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      ..+|+|+|+|.+|..+++.+.. .. .|.+.+++.++.+.+++......+|..+      .+.+.+... ++|+|++|.+
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d------~~~l~~~~~-~~DvVi~~~p   86 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASN------FDKLVEVMK-EFELVIGALP   86 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTC------HHHHHHHHT-TCSEEEECCC
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCC------HHHHHHHHh-CCCEEEEecC
Confidence            4589999999999998887754 34 7889999999988887654333344333      223333332 6899999998


Q ss_pred             cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          220 LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       220 ~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .......+-.++..+ -+++.+..
T Consensus        87 ~~~~~~v~~~~~~~g-~~yvD~s~  109 (365)
T 3abi_A           87 GFLGFKSIKAAIKSK-VDMVDVSF  109 (365)
T ss_dssp             GGGHHHHHHHHHHHT-CEEEECCC
T ss_pred             CcccchHHHHHHhcC-cceEeeec
Confidence            766566777788887 88888764

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.87  E-value=0.0044  Score=53.68  Aligned_cols=79  Identities=16%  Similarity=0.220  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhc--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~  208 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+    ++.+.. ..+  |..+  .+++.+.+.+..  -
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS--VPEIEALVAAVVERY   97 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4679999987 9999999999999999 999999998776543    223432 222  2222  122222233222  1


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        98 g~iD~lv~~Ag~  109 (277)
T 2rhc_B           98 GPVDVLVNNAGR  109 (277)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999873

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.87  E-value=0.0025  Score=55.86  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcC--CcEEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFG--VTEFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g--~~~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.+  ....+  |..+  .+++.+.+.+... 
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD--PGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC--HHHHHHHHHHHHHH
Confidence            4789999987 8999999999999999 9999999987765432    233  11222  2222  1222233333322 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus       117 ~g~iD~lvnnAg~  129 (293)
T 3rih_A          117 FGALDVVCANAGI  129 (293)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             389999998884

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.86  E-value=0.01  Score=51.24  Aligned_cols=79  Identities=22%  Similarity=0.244  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc---C---Cc-EEE--cCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---G---VT-EFV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~---g---~~-~vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+. ++   .   .. ..+  |..+  .+++.+.+.+..
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~   81 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT--DAGQDEILSTTL   81 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC--HHHHHHHHHHHH
Confidence            4678999987 9999999999988999 9999999988766532 22   1   11 222  2222  122333333222


Q ss_pred             C--CCccEEEEcCCc
Q 020435          208 D--GGADYCFECVGL  220 (326)
Q Consensus       208 ~--~g~d~v~d~~g~  220 (326)
                      .  +++|++++++|.
T Consensus        82 ~~~g~id~lv~~Ag~   96 (278)
T 1spx_A           82 GKFGKLDILVNNAGA   96 (278)
T ss_dssp             HHHSCCCEEEECCC-
T ss_pred             HHcCCCCEEEECCCC
Confidence            1  379999999874

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.86  E-value=0.018  Score=49.80  Aligned_cols=79  Identities=22%  Similarity=0.306  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-------------ChhHHHHH----HhcCCcE-EE--cCCCCCCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-------------ISEKFEIG----KRFGVTE-FV--NSKNCGDK  197 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-------------~~~~~~~~----~~~g~~~-vi--~~~~~~~~  197 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++             ++++.+.+    +..+... .+  |..+  .+
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~   90 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD--DA   90 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC--HH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HH
Confidence            5789999987 8999999999999999 9999987             45554433    2334322 22  3222  12


Q ss_pred             cHHHHHHHhcC--CCccEEEEcCCc
Q 020435          198 SVSQIIIDMTD--GGADYCFECVGL  220 (326)
Q Consensus       198 ~~~~~i~~~~~--~g~d~v~d~~g~  220 (326)
                      ++.+.+.+...  +++|++++++|.
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            23333333221  389999999884

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.86  E-value=0.0036  Score=53.04  Aligned_cols=81  Identities=16%  Similarity=0.223  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcC--CcEEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFG--VTEFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g--~~~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+.    ..+  ...++  +.+..+.+++.+.+.+... 
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            5789999987 9999999999999999 9999999988766543    233  12222  2211011222222332221 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        92 ~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 FGRLDGLLHNASI  104 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence             389999998874

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.85  E-value=0.0028  Score=53.92  Aligned_cols=79  Identities=27%  Similarity=0.389  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCc-EE--EcCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~-~v--i~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+.+ ++.. ..  .|..+  .++..+.+.+...  +++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i   84 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTN--PESIEAVLKAITDEFGGV   84 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCC--HHHHHHHHHHHHHHcCCC
Confidence            4789999987 8999999999999999 99999999887765432 3321 22  23222  1223333333322  389


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        85 D~lv~nAg~   93 (248)
T 3op4_A           85 DILVNNAGI   93 (248)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.85  E-value=0.0049  Score=52.04  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=50.8

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC--CCccEEEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYCFE  216 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~--~g~d~v~d  216 (326)
                      +.++||+|+ |.+|.++++.+...|+ +|+++++++++  ..+.+++. .+..+- .+++..+.+.+...  +++|++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~-~~~~D~-~~~~~~~~~~~~~~~~g~id~lv~   76 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAV-PLPTDL-EKDDPKGLVKRALEALGGLHVLVH   76 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCE-EEECCT-TTSCHHHHHHHHHHHHTSCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcE-EEecCC-chHHHHHHHHHHHHHcCCCCEEEE
Confidence            568999987 9999999999999999 99999998776  23334532 222111 11344333333222  37999999


Q ss_pred             cCCc
Q 020435          217 CVGL  220 (326)
Q Consensus       217 ~~g~  220 (326)
                      ++|.
T Consensus        77 ~Ag~   80 (239)
T 2ekp_A           77 AAAV   80 (239)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8873

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.85  E-value=0.0053  Score=52.06  Aligned_cols=77  Identities=18%  Similarity=0.242  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEE--cCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV--NSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+.++.....+  |..+   .+-.+.+.+.. +++|+++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~-~~id~lv   79 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEV-ERLDVLF   79 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHC-SCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCC---HHHHHHHHHHh-CCCCEEE
Confidence            4678999987 9999999999999999 999999998776654443211222  2222   32223333222 3799999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      +++|.
T Consensus        80 ~~Ag~   84 (246)
T 2ag5_A           80 NVAGF   84 (246)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            98873

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.85  E-value=0.0051  Score=52.68  Aligned_cols=78  Identities=22%  Similarity=0.212  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+. ++... ..+  |..+  .+++.+.+.+...  +++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d--~~~v~~~~~~~~~~~g~i   87 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTK--RASVDAAMQKAIDALGGF   87 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTC--HHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC--HHHHHHHHHHHHHHcCCC
Confidence            4689999987 9999999999999999 9999999988776543 33211 222  2222  1223333332221  379


Q ss_pred             cEEEEcCC
Q 020435          212 DYCFECVG  219 (326)
Q Consensus       212 d~v~d~~g  219 (326)
                      |++++++|
T Consensus        88 D~lv~~Ag   95 (263)
T 3ak4_A           88 DLLCANAG   95 (263)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.84  E-value=0.025  Score=48.98  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+    +..+.. ..+  |..+  .+++.+.+.+... 
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  104 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD--LSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS--GGGHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            5789999987 8999999999999999 8999885 55554432    333432 222  2222  2333333333322 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus       105 ~g~iD~lvnnAg~  117 (280)
T 4da9_A          105 FGRIDCLVNNAGI  117 (280)
T ss_dssp             HSCCCEEEEECC-
T ss_pred             cCCCCEEEECCCc
Confidence             289999998875

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.84  E-value=0.0038  Score=54.22  Aligned_cols=79  Identities=19%  Similarity=0.201  Sum_probs=53.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .++++||+|+ +++|.++++.+...|+ +|++++++.++.+.+. .++.. ..+  |..+  .+++.+.+.+...  +++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   80 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRS--LQDQKRAAERCLAAFGKI   80 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHHHHHhcCCC
Confidence            4789999987 8999999999999999 9999999988877654 34432 222  2222  1223333333221  389


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        81 D~lvnnAg~   89 (281)
T 3zv4_A           81 DTLIPNAGI   89 (281)
T ss_dssp             CEEECCCCC
T ss_pred             CEEEECCCc
Confidence            999998873

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.84  E-value=0.0021  Score=54.77  Aligned_cols=75  Identities=19%  Similarity=0.252  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh--HHHHHHhcCCcEE-E--cCCCCCCccHHHHHHHhcC-CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTEF-V--NSKNCGDKSVSQIIIDMTD-GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~--~~~~~~~~g~~~v-i--~~~~~~~~~~~~~i~~~~~-~g~  211 (326)
                      .|+++||+|+ ++||.+.++.+...|+ +|+.++++.+  ..+.+++.|.+.. +  |..+   ..   .+++... +++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d---~~---~v~~~~~~g~i   80 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFAD---PL---AAKDSFTDAGF   80 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS---TT---TTTTSSTTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC---HH---HHHHHHHhCCC
Confidence            4889999987 8999999999999999 9999998753  3455666664322 2  2222   11   2233333 389


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        81 DiLVNNAGi   89 (247)
T 4hp8_A           81 DILVNNAGI   89 (247)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999885

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.84  E-value=0.016  Score=50.56  Aligned_cols=104  Identities=20%  Similarity=0.165  Sum_probs=63.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh--HHHH----HHhcCCcEEEcCCCCCCcc-HHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEI----GKRFGVTEFVNSKNCGDKS-VSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~--~~~~----~~~~g~~~vi~~~~~~~~~-~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++.+  +.+.    +++.+....+-.-+..+.+ +.+.+.+...  
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4789999987 9999999999999999 8999887632  2322    2334543222222211222 2222322221  


Q ss_pred             CCccEEEEcCCcH--------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          209 GGADYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       209 ~g~d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +++|++++++|..                          ...+.++..++++ |++|.++..
T Consensus       127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~Iv~isS~  187 (294)
T 3r3s_A          127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG-ASIITTSSI  187 (294)
T ss_dssp             TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCG
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC-CEEEEECCh
Confidence            3899999988741                          0223334455666 899998764

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.84  E-value=0.0055  Score=52.45  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHH---HHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQII---IDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i---~~~~  207 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+    +..+.. ..+  |..+  .+++.+.+   .+..
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS--RSERQELMNTVANHF   84 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4689999987 9999999999999999 999999998776543    223432 122  2222  12222222   2223


Q ss_pred             CCCccEEEEcCC
Q 020435          208 DGGADYCFECVG  219 (326)
Q Consensus       208 ~~g~d~v~d~~g  219 (326)
                      ++++|++++++|
T Consensus        85 ~g~id~lv~~Ag   96 (260)
T 2ae2_A           85 HGKLNILVNNAG   96 (260)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            258999999987

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.83  E-value=0.005  Score=52.17  Aligned_cols=79  Identities=18%  Similarity=0.239  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhc--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~  208 (326)
                      .+.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+.    +.+.. ..+  |..+  .+++.+.+.+..  .
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISD--IESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHc
Confidence            3678999987 9999999999988999 9999999988766543    33432 222  2222  122333333332  2


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        81 ~~id~li~~Ag~   92 (247)
T 3lyl_A           81 LAIDILVNNAGI   92 (247)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            389999999884

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.83  E-value=0.0039  Score=53.20  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----c-C-CcEE--EcCCCCCCccHHHHHHHhc--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F-G-VTEF--VNSKNCGDKSVSQIIIDMT--  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~-g-~~~v--i~~~~~~~~~~~~~i~~~~--  207 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+    . + ....  .|....+.++..+.+.+..  
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            5789999987 8999999999999999 99999999887665422    1 2 1122  2221101122333333322  


Q ss_pred             CCCccEEEEcCCc
Q 020435          208 DGGADYCFECVGL  220 (326)
Q Consensus       208 ~~g~d~v~d~~g~  220 (326)
                      .+++|++++++|.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            1389999998874

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.82  E-value=0.0054  Score=52.26  Aligned_cols=96  Identities=13%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC--CccEEEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG--GADYCFE  216 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~--g~d~v~d  216 (326)
                      +.++||+|+ |++|.++++.+...|+ +|+++++++++.+..     ...++..+  .+++.+.+.+....  ++|++++
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~-----~~~~d~~d--~~~v~~~~~~~~~~~g~iD~li~   93 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNADH-----SFTIKDSG--EEEIKSVIEKINSKSIKVDTFVC   93 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSSE-----EEECSCSS--HHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccccc-----ceEEEeCC--HHHHHHHHHHHHHHcCCCCEEEE
Confidence            679999987 8999999999999999 899999887653211     11122222  13333444444332  8999999


Q ss_pred             cCCcH--------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          217 CVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       217 ~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++|..                          ...+.+...++++ |++|.++..
T Consensus        94 ~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~  146 (251)
T 3orf_A           94 AAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-GLFVLTGAS  146 (251)
T ss_dssp             CCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred             CCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-CEEEEEech
Confidence            98830                          0233445556676 899998754

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.82  E-value=0.003  Score=54.44  Aligned_cols=79  Identities=23%  Similarity=0.305  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcE-E--EcCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    ..+... .  .|..+  .+++.+.+.+...  
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTD--RHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            3678999987 8999999999999999 9999999988766542    234322 2  23222  1223333333222  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        80 g~iD~lVnnAG~   91 (264)
T 3tfo_A           80 GRIDVLVNNAGV   91 (264)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            389999999874

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.82  E-value=0.0022  Score=55.07  Aligned_cols=79  Identities=13%  Similarity=0.069  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHH-HHHHhcCCcEE-EcCCCCCCccHHHHHHHhc--CCCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF-EIGKRFGVTEF-VNSKNCGDKSVSQIIIDMT--DGGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~-~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~--~~g~d~  213 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++. +.+++.++..+ .|..+  .+++.+.+.+..  -+++|+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSC--ETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTS--HHHHHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCC--HHHHHHHHHHHHHhcCCCCE
Confidence            4678999987 9999999999988999 899999987764 34555664322 12222  122333333322  138999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +++++|.
T Consensus       103 lv~nAg~  109 (260)
T 3gem_A          103 VVHNASE  109 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999883

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.82  E-value=0.0058  Score=52.73  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHH---HHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQ---IIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~---~i~~~~  207 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    +..+.. ..+  |..+  .+++.+   .+.+..
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS--RTERDKLMQTVAHVF   96 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4689999987 9999999999999999 999999998776543    223432 222  2222  122222   222333


Q ss_pred             CCCccEEEEcCCc
Q 020435          208 DGGADYCFECVGL  220 (326)
Q Consensus       208 ~~g~d~v~d~~g~  220 (326)
                      ++++|++++++|.
T Consensus        97 ~g~id~lv~nAg~  109 (273)
T 1ae1_A           97 DGKLNILVNNAGV  109 (273)
T ss_dssp             TSCCCEEEECCCC
T ss_pred             CCCCcEEEECCCC
Confidence            2589999999874

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.82  E-value=0.005  Score=51.63  Aligned_cols=76  Identities=13%  Similarity=0.119  Sum_probs=51.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCc-EE--EcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EF--VNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~-~v--i~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      +++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+ ++.. ..  .|..+   .+-.+.+.+...+.+|+++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLAS---HQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTTC---HHHHHHHHHSCSSCCSEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCCC---HHHHHHHHHHHhhcCCEEE
Confidence            36899987 8999999999999999 89999999988776543 4321 12  23222   3333333333333559999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      +++|.
T Consensus        78 ~~Ag~   82 (230)
T 3guy_A           78 HSAGS   82 (230)
T ss_dssp             ECCCC
T ss_pred             EeCCc
Confidence            98883

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.82  E-value=0.0041  Score=53.86  Aligned_cols=78  Identities=18%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-Hhc---CCcEEE--cCCCCCCccHHHHHHHhc--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF---GVTEFV--NSKNCGDKSVSQIIIDMT--DG  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~---g~~~vi--~~~~~~~~~~~~~i~~~~--~~  209 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+ .++   +.-..+  |..+  .+++.+.+.+..  -+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSS--EAGARRLAQALGELSA  104 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTS--HHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCC--HHHHHHHHHHHHHhcC
Confidence            4679999987 9999999999999999 999999998776543 222   311222  2221  122222233221  13


Q ss_pred             CccEEEEcCC
Q 020435          210 GADYCFECVG  219 (326)
Q Consensus       210 g~d~v~d~~g  219 (326)
                      ++|++|+++|
T Consensus       105 ~iD~lvnnAg  114 (276)
T 2b4q_A          105 RLDILVNNAG  114 (276)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            8999999987

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.81  E-value=0.0036  Score=53.52  Aligned_cols=79  Identities=22%  Similarity=0.219  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++.++.+.+.    ..+.. ..+  |..+  .++..+.+.+...  
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD--EQHREAVIKAALDQF   87 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 8999999999888999 8999999988765542    33432 222  2222  1222222333222  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        88 g~id~lv~nAg~   99 (256)
T 3gaf_A           88 GKITVLVNNAGG   99 (256)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            389999998874

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.81  E-value=0.002  Score=55.57  Aligned_cols=78  Identities=19%  Similarity=0.184  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEE--cCCCCCCccHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV--NSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++.++.+.+..... ..+  |..+  .+++.+.+.+...  +++|+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD~   90 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNT-LCAQVDVTD--KYTFDTAITRAEKIYGPADA   90 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTE-EEEECCTTC--HHHHHHHHHHHHHHHCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCc-eEEEecCCC--HHHHHHHHHHHHHHCCCCCE
Confidence            3679999987 9999999999999999 89999998877665432222 222  2222  1223333333221  38999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +++++|.
T Consensus        91 lvnnAg~   97 (266)
T 3p19_A           91 IVNNAGM   97 (266)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999884

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.81  E-value=0.0032  Score=54.74  Aligned_cols=79  Identities=13%  Similarity=0.197  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-c----CCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~----g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+ +    +.. ..+  |..+  .+++.+.+.+... 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  108 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD--PDQVAALFAAVRAE  108 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 8999999999999999 99999999887665432 2    221 222  3222  1223333333222 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus       109 ~g~iD~lvnnAG~  121 (281)
T 4dry_A          109 FARLDLLVNNAGS  121 (281)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             389999998874

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.80  E-value=0.0064  Score=52.18  Aligned_cols=79  Identities=16%  Similarity=0.162  Sum_probs=49.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH---HHHH----HhcCCcE-EE--cCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK---FEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~---~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|+.++++..+   .+.+    +..+... .+  |..+  .++..+.+.+..
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN--EEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHH
Confidence            4789999987 8999999999999999 89998765433   2222    2234322 22  2222  122222333322


Q ss_pred             C--CCccEEEEcCCc
Q 020435          208 D--GGADYCFECVGL  220 (326)
Q Consensus       208 ~--~g~d~v~d~~g~  220 (326)
                      .  +++|++++++|.
T Consensus        87 ~~~g~iD~lvnnAg~  101 (262)
T 3ksu_A           87 KEFGKVDIAINTVGK  101 (262)
T ss_dssp             HHHCSEEEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            2  389999999883

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.80  E-value=0.006  Score=52.50  Aligned_cols=79  Identities=18%  Similarity=0.352  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-H----hcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ .    ..+.. ..+  |..+  .+++.+.+.+... 
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN--YEEVKKLLEAVKEK   96 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4689999987 9999999999999999 999999998776543 2    22432 222  2222  1223333332221 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++|+++|.
T Consensus        97 ~g~iD~lvnnAg~  109 (267)
T 1vl8_A           97 FGKLDTVVNAAGI  109 (267)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence             379999998874

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.80  E-value=0.0055  Score=52.84  Aligned_cols=81  Identities=16%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhc--CCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMT--DGG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~--~~g  210 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    ++.+.. .++..+-.+.+++.+.+.+..  -++
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            4679999987 9999999999999999 999999988776543    223432 222222101122333333322  138


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++|+++|.
T Consensus       109 iD~li~~Ag~  118 (272)
T 1yb1_A          109 VSILVNNAGV  118 (272)
T ss_dssp             CSEEEECCCC
T ss_pred             CcEEEECCCc
Confidence            9999999873

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.80  E-value=0.015  Score=50.51  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=62.6

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|... .       .+..+.+.     ..|+||-|+..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~-------~~~~~~~~-----~aDvvi~~vp~   67 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAER-A-------ATPCEVVE-----SCPVTFAMLAD   67 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEE-C-------SSHHHHHH-----HCSEEEECCSS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCee-c-------CCHHHHHh-----cCCEEEEEcCC
Confidence            579999999999999999988998 9999999999988887776531 1       23333333     37899988886


Q ss_pred             HHHHHHHH-------HHhhcCCcEEEEec
Q 020435          221 ASLVQEAY-------ACCRKGWGKTIVLG  242 (326)
Q Consensus       221 ~~~~~~~~-------~~l~~~~G~~v~~g  242 (326)
                      +......+       ..++++ ..++..+
T Consensus        68 ~~~~~~v~~~~~~l~~~l~~~-~~vi~~s   95 (287)
T 3pef_A           68 PAAAEEVCFGKHGVLEGIGEG-RGYVDMS   95 (287)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred             HHHHHHHHcCcchHhhcCCCC-CEEEeCC
Confidence            54344444       456665 5555553

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.80  E-value=0.0047  Score=52.73  Aligned_cols=77  Identities=18%  Similarity=0.135  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHH---HHHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVS---QIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~---~~i~~~~  207 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.+.. ..+  |..+  .+++.   +.+.+. 
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~-   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN--EDEVTAFLNAADAH-   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC--HHHHHHHHHHHHhh-
Confidence            4689999987 8999999999999999 9999999988765432    23432 222  2222  12222   233333 


Q ss_pred             CCCccEEEEcCCc
Q 020435          208 DGGADYCFECVGL  220 (326)
Q Consensus       208 ~~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        82 -g~id~lv~nAg~   93 (252)
T 3h7a_A           82 -APLEVTIFNVGA   93 (252)
T ss_dssp             -SCEEEEEECCCC
T ss_pred             -CCceEEEECCCc
Confidence             589999999884

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.80  E-value=0.0089  Score=51.76  Aligned_cols=99  Identities=11%  Similarity=0.151  Sum_probs=70.0

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc----CC---cEEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GV---TEFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~----g~---~~vi~~~~~~~~~~~~~i  203 (326)
                      +.+..++.++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++.    +.   -.++..      ++    
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~------d~----  123 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLA------GW----  123 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES------CG----
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC------Ch----
Confidence            44566788899999999876 7778888877798 999999999988877652    32   122221      11    


Q ss_pred             HHhcCCCccEEEEc-----CC---cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          204 IDMTDGGADYCFEC-----VG---LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       204 ~~~~~~g~d~v~d~-----~g---~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .++. +.+|+|+..     .+   -...+..+.+.|+++ |.++....
T Consensus       124 ~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  169 (287)
T 1kpg_A          124 EQFD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI  169 (287)
T ss_dssp             GGCC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred             hhCC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC-CEEEEEEe
Confidence            1111 479999864     21   234578889999998 99988754

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.79  E-value=0.0046  Score=53.71  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-c---CCcEEEcCCCCCCcc-HHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F---GVTEFVNSKNCGDKS-VSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~---g~~~vi~~~~~~~~~-~~~~i~~~~~--~g  210 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+ +   +.....-.-+..+.+ +.+.+.+...  ++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999987 8999999999999999 99999999887665432 2   332222111211122 2222322221  38


Q ss_pred             ccEEEEcCC
Q 020435          211 ADYCFECVG  219 (326)
Q Consensus       211 ~d~v~d~~g  219 (326)
                      +|++++++|
T Consensus        86 iD~lvnnAg   94 (280)
T 3tox_A           86 LDTAFNNAG   94 (280)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999988

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.79  E-value=0.0067  Score=52.18  Aligned_cols=79  Identities=20%  Similarity=0.189  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hc--CCc-EEEcCCCCCCccHHHHHHHhcCCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RF--GVT-EFVNSKNCGDKSVSQIIIDMTDGG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~--g~~-~vi~~~~~~~~~~~~~i~~~~~~g  210 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    ..  +.. ..+..+- .+....+.+.+.. ++
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~-g~   85 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADL-GTEQGCQDVIEKY-PK   85 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCT-TSHHHHHHHHHHC-CC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCC-CCHHHHHHHHHhc-CC
Confidence            4789999987 8999999999999999 9999999987765432    22  221 1221111 1133333333322 38


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus        86 id~lv~nAg~   95 (267)
T 3t4x_A           86 VDILINNLGI   95 (267)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.79  E-value=0.0056  Score=52.19  Aligned_cols=102  Identities=16%  Similarity=0.216  Sum_probs=72.0

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc----EEEcCCCCCCccHHHHHHHh
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT----EFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~----~vi~~~~~~~~~~~~~i~~~  206 (326)
                      +.+...+.++.+||-+|+| .|..+..+++..+. +|++++.+++..+.+++....    .++..+-   .++     ..
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~-----~~  116 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDI---LTK-----EF  116 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCT---TTC-----CC
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc---ccC-----CC
Confidence            4566678899999999987 48888888887787 999999999999988775321    2222221   111     11


Q ss_pred             cCCCccEEEEcCCc--------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          207 TDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       207 ~~~g~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..+.+|+|+....-        ...+..+.+.|+++ |.++....
T Consensus       117 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  160 (266)
T 3ujc_A          117 PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT-GTLLITDY  160 (266)
T ss_dssp             CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC-CEEEEEEe
Confidence            12389999975332        23467888999998 99988764

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.79  E-value=0.0044  Score=53.47  Aligned_cols=79  Identities=23%  Similarity=0.239  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. ..+  |..+  .+++.+.+.+...  +++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   86 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTN--EVSVRALIDFTIDTFGRL   86 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC--HHHHHHHHHHHHHHcCCC
Confidence            4789999987 9999999999999999 999999998876654 345532 222  3222  1223333332222  289


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        87 d~lv~nAg~   95 (271)
T 3tzq_B           87 DIVDNNAAH   95 (271)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998874

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.78  E-value=0.0052  Score=53.29  Aligned_cols=79  Identities=18%  Similarity=0.215  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcE-EE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    +..+... .+  |..+  .+++.+.+.+...  
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS--TDEVHAAVAAAVERF   99 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5789999987 9999999999989999 999999998876543    2334322 22  2222  1222233333222  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus       100 g~id~lv~nAg~  111 (279)
T 3sju_A          100 GPIGILVNSAGR  111 (279)
T ss_dssp             CSCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            389999999874

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.78  E-value=0.0059  Score=52.78  Aligned_cols=80  Identities=23%  Similarity=0.258  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh---cCCc-EEEcCCCCCCccHHHHHHHhc--CCCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVT-EFVNSKNCGDKSVSQIIIDMT--DGGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~---~g~~-~vi~~~~~~~~~~~~~i~~~~--~~g~  211 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++++..+..++   .+.. ..+..+- .+.+-.+.+.+..  .+++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv-~d~~~v~~~~~~~~~~g~i  107 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADL-ADLEGAANVAEELAATRRV  107 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCT-TCHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecC-CCHHHHHHHHHHHHhcCCC
Confidence            4789999987 8999999999999999 89999976544443333   3332 2221111 1122222222211  1389


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus       108 D~lv~nAg~  116 (273)
T 3uf0_A          108 DVLVNNAGI  116 (273)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCCC
Confidence            999998874

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.78  E-value=0.0039  Score=53.15  Aligned_cols=80  Identities=16%  Similarity=0.198  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEEcCCCCCC-ccHHHHHHHhcC--CCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFVNSKNCGD-KSVSQIIIDMTD--GGAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi~~~~~~~-~~~~~~i~~~~~--~g~d  212 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+ .+++.. ..+..+- .+ +++.+.+.+...  +++|
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-~~~~~v~~~~~~~~~~~g~id   82 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDV-SSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCT-TCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccC-CCHHHHHHHHHHHHHHcCCCC
Confidence            4678999987 9999999999999999 999999998876654 334432 2222111 11 223333333221  3799


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      ++++++|.
T Consensus        83 ~lv~~Ag~   90 (253)
T 1hxh_A           83 VLVNNAGI   90 (253)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999874

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.77  E-value=0.0051  Score=52.82  Aligned_cols=79  Identities=20%  Similarity=0.210  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhc--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~  208 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|++++++.++.+.+.    +.+.. ..+  |..+  .+++.+.+.+..  -
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD--DAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            5789999987 8999999999999999 9999999988766542    23432 222  2222  122333333322  1


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        87 g~id~lv~nAg~   98 (264)
T 3ucx_A           87 GRVDVVINNAFR   98 (264)
T ss_dssp             SCCSEEEECCCS
T ss_pred             CCCcEEEECCCC
Confidence            389999998864

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.77  E-value=0.0044  Score=52.40  Aligned_cols=81  Identities=21%  Similarity=0.301  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-----cCCc-EEEcCCCCCCccHHHHHHHhc--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVT-EFVNSKNCGDKSVSQIIIDMT--DG  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-----~g~~-~vi~~~~~~~~~~~~~i~~~~--~~  209 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+     .+.. ..+..+-.+.+++.+.+.+..  -+
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVD   84 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4678999987 9999999999988999 99999998877654322     2432 222222101122333333322  13


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++|++++.
T Consensus        85 ~~d~vi~~Ag~   95 (248)
T 2pnf_A           85 GIDILVNNAGI   95 (248)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999998873

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.76  E-value=0.0034  Score=54.34  Aligned_cols=79  Identities=19%  Similarity=0.281  Sum_probs=53.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|++++++.++.+.+. .++.. ..+  |..+  .+++.+.+.+...  +++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~i   80 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTD--GERIDVVAADVLARYGRV   80 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCC--HHHHHHHHHHHHHhCCCC
Confidence            4678999987 9999999999999999 9999999988776653 34422 222  2222  1223333333221  279


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        81 d~lv~~Ag~   89 (281)
T 3m1a_A           81 DVLVNNAGR   89 (281)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999884

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.76  E-value=0.024  Score=48.89  Aligned_cols=79  Identities=20%  Similarity=0.227  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-------------ChhHHHHH----HhcCCcE-EE--cCCCCCCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-------------ISEKFEIG----KRFGVTE-FV--NSKNCGDK  197 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-------------~~~~~~~~----~~~g~~~-vi--~~~~~~~~  197 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|+++++             +.++.+.+    +..+... .+  |..+  .+
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~   86 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRD--FD   86 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC--HH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC--HH
Confidence            4789999987 8999999999999999 9999987             44444332    2334322 22  2222  12


Q ss_pred             cHHHHHHHhcC--CCccEEEEcCCc
Q 020435          198 SVSQIIIDMTD--GGADYCFECVGL  220 (326)
Q Consensus       198 ~~~~~i~~~~~--~g~d~v~d~~g~  220 (326)
                      ++.+.+.+...  +++|++++++|.
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            23333333222  379999998874

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.75  E-value=0.0065  Score=51.76  Aligned_cols=80  Identities=23%  Similarity=0.279  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    +..+.. .++..+-.+.+++.+.+.+...  ++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGR   90 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4689999987 9999999999998999 999999988765433    223432 2222221011223333333221  37


Q ss_pred             ccEEEEcCC
Q 020435          211 ADYCFECVG  219 (326)
Q Consensus       211 ~d~v~d~~g  219 (326)
                      +|++|+++|
T Consensus        91 id~vi~~Ag   99 (260)
T 3awd_A           91 VDILVACAG   99 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.75  E-value=0.0053  Score=52.61  Aligned_cols=79  Identities=14%  Similarity=0.223  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+. ++... ..+  |..+  .+++.+.+.+...  +++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   82 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ--PAQWKAAVDTAVTAFGGL   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4679999987 9999999999988999 9999999988766543 33321 222  2222  1223333333222  279


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        83 D~lv~~Ag~   91 (260)
T 1nff_A           83 HVLVNNAGI   91 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998873

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.74  E-value=0.005  Score=53.84  Aligned_cols=78  Identities=14%  Similarity=0.096  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCC-c-EEE--cCCCCCCc-cHHH-HHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGV-T-EFV--NSKNCGDK-SVSQ-IIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~-~-~vi--~~~~~~~~-~~~~-~i~~~~  207 (326)
                      .+.++||+|+ |+||.++++.+...|+ +|++++++.++.+.+    ++.+. . .++  |..+   . +..+ .+..+.
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~---~~~~v~~~~~~~~   86 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD---PIATMSSLADFIK   86 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS---CHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC---cHHHHHHHHHHHH
Confidence            5789999987 8999999999988999 999999998875543    22221 1 222  3322   2 2222 222221


Q ss_pred             C--CCccEEEEcCCc
Q 020435          208 D--GGADYCFECVGL  220 (326)
Q Consensus       208 ~--~g~d~v~d~~g~  220 (326)
                      .  +++|++|+++|.
T Consensus        87 ~~~g~iD~lv~nAg~  101 (311)
T 3o26_A           87 THFGKLDILVNNAGV  101 (311)
T ss_dssp             HHHSSCCEEEECCCC
T ss_pred             HhCCCCCEEEECCcc
Confidence            1  389999999984

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.74  E-value=0.0037  Score=53.43  Aligned_cols=79  Identities=19%  Similarity=0.314  Sum_probs=48.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. ..+  |..+  .+++.+.+.+...  +++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   82 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTN--EADATAALAFAKQEFGHV   82 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            4789999987 8999999999999999 999999988776553 334422 222  2222  1223333333222  289


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        83 d~lv~nAg~   91 (257)
T 3tpc_A           83 HGLVNCAGT   91 (257)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998873

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.74  E-value=0.0061  Score=52.25  Aligned_cols=79  Identities=25%  Similarity=0.358  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    ..+.. ..+  |..+  .+++.+.+.+...  
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            4679999987 9999999999999999 9999999987765432    23432 222  2222  1222222332221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        83 g~id~lv~nAg~   94 (262)
T 1zem_A           83 GKIDFLFNNAGY   94 (262)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999998873

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.73  E-value=0.0067  Score=49.32  Aligned_cols=102  Identities=20%  Similarity=0.217  Sum_probs=69.1

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCC---cEEEcCCCCCCccHHHHHH
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGV---TEFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~---~~vi~~~~~~~~~~~~~i~  204 (326)
                      ....++++++||-.|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|.   -.++..+-   .++    .
T Consensus        16 ~~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~----~   87 (197)
T 3eey_A           16 IKMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH---QNM----D   87 (197)
T ss_dssp             HHHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG---GGG----G
T ss_pred             HHhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH---HHH----h
Confidence            345678899999999876 778888888764 2289999999988877654    333   12332221   111    1


Q ss_pred             HhcCCCccEEEEcCCc---------------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          205 DMTDGGADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ...++.+|+|+...+-               ...+..+.+.|+++ |.++....
T Consensus        88 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~  140 (197)
T 3eey_A           88 KYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVIY  140 (197)
T ss_dssp             GTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             hhccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEEc
Confidence            1223489999855432               24588999999998 99987753

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.72  E-value=0.0051  Score=52.58  Aligned_cols=78  Identities=28%  Similarity=0.372  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+ ++++.. .++  |..+  .+++.+.+.+...  +++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   87 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS--EKDVQTALALAKGKFGRV   87 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHHCCCC
Confidence            4679999987 9999999999999999 999999988766543 344432 222  2222  1223333332221  379


Q ss_pred             cEEEEcCC
Q 020435          212 DYCFECVG  219 (326)
Q Consensus       212 d~v~d~~g  219 (326)
                      |++|+++|
T Consensus        88 d~li~~Ag   95 (265)
T 2o23_A           88 DVAVNCAG   95 (265)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99999887

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.72  E-value=0.0044  Score=52.50  Aligned_cols=81  Identities=21%  Similarity=0.248  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcC---CcEEEcCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG---VTEFVNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g---~~~vi~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +.+.   .-.++..+-.+.+++.+.+.+...  +++
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4678999987 9999999999999999 999999988776554 2232   112232221011223333333221  279


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++|+++|.
T Consensus        84 d~li~~Ag~   92 (251)
T 1zk4_A           84 STLVNNAGI   92 (251)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998873

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.72  E-value=0.0066  Score=51.84  Aligned_cols=41  Identities=20%  Similarity=0.162  Sum_probs=35.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  180 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~  180 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4679999987 9999999999988999 999999998876654

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.71  E-value=0.014  Score=50.69  Aligned_cols=74  Identities=19%  Similarity=0.223  Sum_probs=52.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCC----cEEEcCCCCCCccHHHHHHHhcCCCccE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV----TEFVNSKNCGDKSVSQIIIDMTDGGADY  213 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~----~~vi~~~~~~~~~~~~~i~~~~~~g~d~  213 (326)
                      .+.++||+|+|++|.+++..+...|+.+|+++.|+.++.+.+ ++++.    ..+...+.   +++.+.+.     .+|+
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~---~~l~~~l~-----~~Di  197 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA---RGIEDVIA-----AADG  197 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS---TTHHHHHH-----HSSE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH---HHHHHHHh-----cCCE
Confidence            578999999999999999999889987799999999887654 33321    11211121   23444333     4899


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      |++|.+.
T Consensus       198 VInaTp~  204 (283)
T 3jyo_A          198 VVNATPM  204 (283)
T ss_dssp             EEECSST
T ss_pred             EEECCCC
Confidence            9999874

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.71  E-value=0.0064  Score=52.21  Aligned_cols=79  Identities=19%  Similarity=0.134  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----h-cCCc--EEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----R-FGVT--EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~-~g~~--~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|+++++++++.+.+.    . .+..  ..+  |..+  .++..+.+.+...
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   83 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD--ALQVRAFAEACER   83 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC--HHHHHHHHHHHHH
Confidence            4789999987 8999999999999999 8999999988765432    2 3322  222  2222  1222222332221


Q ss_pred             --CCccEEEEcCCc
Q 020435          209 --GGADYCFECVGL  220 (326)
Q Consensus       209 --~g~d~v~d~~g~  220 (326)
                        +++|++++++|.
T Consensus        84 ~~g~id~lvnnAg~   97 (265)
T 3lf2_A           84 TLGCASILVNNAGQ   97 (265)
T ss_dssp             HHCSCSEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence              389999999884

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.70  E-value=0.0064  Score=51.87  Aligned_cols=77  Identities=18%  Similarity=0.126  Sum_probs=51.0

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhc--CC
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMT--DG  209 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~~  209 (326)
                      +.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+.    ..+.. ..+  |..+  .+++.+.+.+..  -+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD--RDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHhC
Confidence            468999987 9999999999999999 9999999987765432    23432 222  2222  122333333222  13


Q ss_pred             CccEEEEcCC
Q 020435          210 GADYCFECVG  219 (326)
Q Consensus       210 g~d~v~d~~g  219 (326)
                      ++|++++++|
T Consensus        79 ~id~lv~nAg   88 (256)
T 1geg_A           79 GFDVIVNNAG   88 (256)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            8999999887

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.70  E-value=0.0064  Score=51.61  Aligned_cols=79  Identities=15%  Similarity=0.311  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc--EEE--cCCCCCCccHHHHHHHhc-CCCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT--EFV--NSKNCGDKSVSQIIIDMT-DGGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~--~vi--~~~~~~~~~~~~~i~~~~-~~g~  211 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ ++++..  ..+  |..+  .+.+.+.+.+.. -+++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~i   86 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTD--AEAMTAAAAEAEAVAPV   86 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC--HHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCC--HHHHHHHHHHHHhhCCC
Confidence            4679999987 9999999999999999 999999998876654 334432  222  2222  122222222211 1379


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++|+++|.
T Consensus        87 d~li~~Ag~   95 (254)
T 2wsb_A           87 SILVNSAGI   95 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCcc
Confidence            999998873

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.70  E-value=0.0059  Score=53.44  Aligned_cols=81  Identities=20%  Similarity=0.258  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g--~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .+.++||+|+ |  ++|.++++.+...|+ +|++++++++..+.+.    ..+....+.-+-.+.+++.+.+.+...  +
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4789999987 5  999999999989999 8999999876544432    344333332221011223333333322  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus       108 ~iD~lVnnAG~  118 (296)
T 3k31_A          108 SLDFVVHAVAF  118 (296)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            89999999874

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.70  E-value=0.013  Score=49.88  Aligned_cols=74  Identities=20%  Similarity=0.149  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          138 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      -.+.++||+|+ |.+|.++++.+...|+ +|++++++++..+   +++...++  -+. .++..+.+.+..  ++|++++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~---~~~~~~~~--~D~-~~~~~~~~~~~~--~iD~lv~   87 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLK---RSGHRYVV--CDL-RKDLDLLFEKVK--EVDILVL   87 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH---HTCSEEEE--CCT-TTCHHHHHHHSC--CCSEEEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHH---hhCCeEEE--eeH-HHHHHHHHHHhc--CCCEEEE
Confidence            35789999987 9999999999999999 9999999875443   33432232  121 134444444332  7999999


Q ss_pred             cCCc
Q 020435          217 CVGL  220 (326)
Q Consensus       217 ~~g~  220 (326)
                      ++|.
T Consensus        88 ~Ag~   91 (249)
T 1o5i_A           88 NAGG   91 (249)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8873

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.70  E-value=0.0044  Score=49.87  Aligned_cols=99  Identities=15%  Similarity=0.189  Sum_probs=66.3

Q ss_pred             hcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHHHhc
Q 020435          134 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       134 ~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ...++++++||-.|+|. |..+..+++. +. +|++++.+++..+.+++    .+.+  .++..+.   .+    +....
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~---~~----l~~~~   86 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDGH---EN----LDHYV   86 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCG---GG----GGGTC
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcH---HH----HHhhc
Confidence            45677899999999876 7777778877 76 99999999998877654    3432  3333111   11    11223


Q ss_pred             CCCccEEEEcCCc---------------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          208 DGGADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       208 ~~g~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ++.+|+|+...+.               ...+..+.+.|+++ |.++....
T Consensus        87 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~  136 (185)
T 3mti_A           87 REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIY  136 (185)
T ss_dssp             CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            3489999855321               12357788999998 99988754

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.70  E-value=0.0061  Score=52.34  Aligned_cols=103  Identities=11%  Similarity=0.084  Sum_probs=65.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH---HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG---KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~---~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      +|+++||+|+ ++||.+.++.+...|+ +|+.+++++++.+.+   .+.+.. ..+  |..+  .++..+.+.+...  +
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~v~~~~~~~G   82 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQD--DAQCRDAVAQTIATFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            5789999987 8999999999999999 999999887654433   334422 222  3222  1223333333322  3


Q ss_pred             CccEEEEcCCcH------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          210 GADYCFECVGLA------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       210 g~d~v~d~~g~~------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++|++++++|..                        ...+.++..++.++|++|.++..
T Consensus        83 ~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~  141 (258)
T 4gkb_A           83 RLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSK  141 (258)
T ss_dssp             CCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCT
T ss_pred             CCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeeh
Confidence            899999998841                        02334455554323999998753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.70  E-value=0.012  Score=50.29  Aligned_cols=90  Identities=19%  Similarity=0.283  Sum_probs=56.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh-------------------hHHHHH----HhcCCc-EEEcCCCCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-------------------EKFEIG----KRFGVT-EFVNSKNCG  195 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~-------------------~~~~~~----~~~g~~-~vi~~~~~~  195 (326)
                      +.+|+|+|+|++|..+++.+...|.++++.++.+.                   .+.+.+    +++... .+...... 
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~-  109 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL-  109 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC-
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc-
Confidence            57999999999999999999999988899999876                   454433    233321 22211110 


Q ss_pred             CccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhc
Q 020435          196 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK  233 (326)
Q Consensus       196 ~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~  233 (326)
                       -+ .+.+.+.. .++|+|++|.++...-..+.+.+..
T Consensus       110 -~~-~~~~~~~~-~~~DvVi~~~d~~~~~~~l~~~~~~  144 (249)
T 1jw9_B          110 -LD-DAELAALI-AEHDLVLDCTDNVAVRNQLNAGCFA  144 (249)
T ss_dssp             -CC-HHHHHHHH-HTSSEEEECCSSHHHHHHHHHHHHH
T ss_pred             -CC-HhHHHHHH-hCCCEEEEeCCCHHHHHHHHHHHHH
Confidence             11 11222221 1699999999987743344444443

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.69  E-value=0.008  Score=52.01  Aligned_cols=76  Identities=25%  Similarity=0.341  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC-CCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-GGAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-~g~d  212 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ .+++.. .++  |..+  .+++.+.+.+... +++|
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~id  105 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTS--EDSVLAAIEAANQLGRLR  105 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHhCCCC
Confidence            4779999987 8999999999999999 999999998887764 345532 222  2222  1233333444422 2899


Q ss_pred             EEEEc
Q 020435          213 YCFEC  217 (326)
Q Consensus       213 ~v~d~  217 (326)
                      +++.+
T Consensus       106 ~lv~~  110 (281)
T 3ppi_A          106 YAVVA  110 (281)
T ss_dssp             EEEEC
T ss_pred             eEEEc
Confidence            99987

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.67  E-value=0.0057  Score=54.92  Aligned_cols=79  Identities=24%  Similarity=0.291  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-----------HHHHHhcCCcEE-E--cCCCCCCccHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-----------FEIGKRFGVTEF-V--NSKNCGDKSVSQII  203 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-----------~~~~~~~g~~~v-i--~~~~~~~~~~~~~i  203 (326)
                      .+.++||+|+ ++||.++++.+...|+ +|++++++.++           .+.++..+.... +  |..+  .+++.+.+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d--~~~v~~~~  120 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD--EQQISAAV  120 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHH
Confidence            4789999987 8999999999999999 99999988763           233444553322 2  3222  12233333


Q ss_pred             HHhcC--CCccEEEEcCCc
Q 020435          204 IDMTD--GGADYCFECVGL  220 (326)
Q Consensus       204 ~~~~~--~g~d~v~d~~g~  220 (326)
                      .+...  +++|++++++|.
T Consensus       121 ~~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            33322  389999999884

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.66  E-value=0.0067  Score=52.32  Aligned_cols=79  Identities=15%  Similarity=0.040  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHHH-hc----CCc-EEE--cCCCCCC----ccHHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGK-RF----GVT-EFV--NSKNCGD----KSVSQIII  204 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~~~-~~----g~~-~vi--~~~~~~~----~~~~~~i~  204 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+. ++    +.. ..+  |..+  .    +.+.+.+.
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   86 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL--SSSLLDCCEDIID   86 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS--STTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCC--ccccHHHHHHHHH
Confidence            4678999987 9999999999999999 9999999 777655432 22    432 222  3222  2    22222232


Q ss_pred             HhcC--CCccEEEEcCCc
Q 020435          205 DMTD--GGADYCFECVGL  220 (326)
Q Consensus       205 ~~~~--~g~d~v~d~~g~  220 (326)
                      +...  +++|++|+++|.
T Consensus        87 ~~~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHhcCCCCEEEECCCC
Confidence            2221  379999999873

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.66  E-value=0.0055  Score=52.90  Aligned_cols=79  Identities=20%  Similarity=0.238  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.+.. ..+  |..+  .+++.+.+.+...  
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND--ATAVDALVESTLKEF  103 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC--HHHHHHHHHHHHHHc
Confidence            4679999987 8999999999999999 999999998776543    223322 222  3222  1223333333222  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus       104 g~iD~lvnnAg~  115 (270)
T 3ftp_A          104 GALNVLVNNAGI  115 (270)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999873

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.65  E-value=0.0099  Score=50.80  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EEE--cCCCCCCccHHHHHHHhc---
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EFV--NSKNCGDKSVSQIIIDMT---  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~vi--~~~~~~~~~~~~~i~~~~---  207 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    ..+.. ..+  |..+  .+++.+.+.+..   
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ--ESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC--HHHHHHHHHHHHHhc
Confidence            3678999987 9999999999999999 9999999987765432    22432 222  2222  122333333331   


Q ss_pred             CCCccEEEEcCC
Q 020435          208 DGGADYCFECVG  219 (326)
Q Consensus       208 ~~g~d~v~d~~g  219 (326)
                      .+++|++++++|
T Consensus        81 ~g~id~lvnnAg   92 (260)
T 2qq5_A           81 QGRLDVLVNNAY   92 (260)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCceEEEECCc
Confidence            348999999984

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.64  E-value=0.0069  Score=51.78  Aligned_cols=80  Identities=21%  Similarity=0.303  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-HHHHH-hc----CCc-EEEcCCCCCCc-cHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEIGK-RF----GVT-EFVNSKNCGDK-SVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-~~~~~-~~----g~~-~vi~~~~~~~~-~~~~~i~~~~~-  208 (326)
                      ++.++||+|+ |++|.++++.+...|+ +|+++++++++ .+.+. .+    +.. ..+.. +..+. ++.+.+.+... 
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA-DLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECC-CTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEEC-CCCCHHHHHHHHHHHHHh
Confidence            3678999987 8999999999999999 99999988776 44332 22    432 22221 11112 23333333222 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++|+++|.
T Consensus        81 ~g~iD~lv~~Ag~   93 (260)
T 1x1t_A           81 MGRIDILVNNAGI   93 (260)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999998873

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.64  E-value=0.0063  Score=51.59  Aligned_cols=79  Identities=23%  Similarity=0.297  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+    +..+.. ..+  |..+  .+++.+.+.+... 
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN--AEDVTNMVKQTVDV   79 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            3678999987 9999999999999999 9999988 76665433    223432 222  2222  1223333333221 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        80 ~g~id~lv~nAg~   92 (246)
T 2uvd_A           80 FGQVDILVNNAGV   92 (246)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999998873

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.64  E-value=0.0078  Score=52.55  Aligned_cols=78  Identities=12%  Similarity=0.191  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc----CCc-EEE--cCCCCCCccHHHHHHHhc--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVT-EFV--NSKNCGDKSVSQIIIDMT--  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~----g~~-~vi--~~~~~~~~~~~~~i~~~~--  207 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+. ++    +.. .++  |..+  .+++.+.+.+..  
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD--PDMVQNTVSELIKV  101 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC--HHHHHHHHHHHHHH
Confidence            4679999987 9999999999999999 9999999987765432 22    432 222  2222  122333333321  


Q ss_pred             CCCccEEEEcCC
Q 020435          208 DGGADYCFECVG  219 (326)
Q Consensus       208 ~~g~d~v~d~~g  219 (326)
                      -+++|++|+++|
T Consensus       102 ~g~id~li~~Ag  113 (302)
T 1w6u_A          102 AGHPNIVINNAA  113 (302)
T ss_dssp             TCSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            237999999987

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.63  E-value=0.007  Score=51.83  Aligned_cols=80  Identities=19%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCc-cHHHHHH---HhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDK-SVSQIII---DMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~-~~~~~i~---~~~~  208 (326)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    +..+.. ..+..+- .+. ++.+.+.   +..+
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~~   90 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDA-SLRPEREKLMQTVSSMFG   90 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-TSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCC-CCHHHHHHHHHHHHHHhC
Confidence            4678999987 9999999999999999 999999988765543    223432 2222211 112 2222222   2222


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|+++|.
T Consensus        91 ~~id~li~~Ag~  102 (266)
T 1xq1_A           91 GKLDILINNLGA  102 (266)
T ss_dssp             TCCSEEEEECCC
T ss_pred             CCCcEEEECCCC
Confidence            589999998874

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.63  E-value=0.014  Score=51.35  Aligned_cols=88  Identities=26%  Similarity=0.281  Sum_probs=65.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++..|. +|++.+++.++ +.+.+.|++. .        ++.+.+.     ..|+|+.+.
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~-~--------~l~ell~-----~aDvV~l~~  204 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKF-V--------DLETLLK-----ESDVVTIHV  204 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEE-C--------CHHHHHH-----HCSEEEECC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCccc-c--------CHHHHHh-----hCCEEEEec
Confidence            47899999999999999999999999 99999998877 5566677632 1        2223232     489999877


Q ss_pred             CcHH----HH-HHHHHHhhcCCcEEEEecc
Q 020435          219 GLAS----LV-QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~~----~~-~~~~~~l~~~~G~~v~~g~  243 (326)
                      ....    .+ ...+..++++ ..++.++.
T Consensus       205 p~~~~t~~li~~~~l~~mk~g-a~lin~ar  233 (307)
T 1wwk_A          205 PLVESTYHLINEERLKLMKKT-AILINTSR  233 (307)
T ss_dssp             CCSTTTTTCBCHHHHHHSCTT-CEEEECSC
T ss_pred             CCChHHhhhcCHHHHhcCCCC-eEEEECCC
Confidence            6422    12 3567789997 88888865

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.63  E-value=0.0075  Score=52.08  Aligned_cols=81  Identities=19%  Similarity=0.255  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEEEcCCCCCCc-cHHHHHHHhc--CCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDK-SVSQIIIDMT--DGG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~-~~~~~i~~~~--~~g  210 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.+....+-.-+..+. ++.+.+.+..  .++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            4789999987 8999999999999999 999999998876543    23343322211121112 2223333222  238


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus       104 iD~lv~nAg~  113 (271)
T 4ibo_A          104 VDILVNNAGI  113 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.63  E-value=0.0066  Score=51.65  Aligned_cols=76  Identities=14%  Similarity=0.270  Sum_probs=51.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCc-EEE--cCCCCCCccHHHHHHHhcCC--CccE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFV--NSKNCGDKSVSQIIIDMTDG--GADY  213 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~-~vi--~~~~~~~~~~~~~i~~~~~~--g~d~  213 (326)
                      .++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +++.. ..+  |..+  .+++.+.+.+....  ++|+
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD~   77 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWCNIDI   77 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHTSCTTTCCCCE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC--HHHHHHHHHHHHHhCCCCCE
Confidence            36889987 8999999999999999 9999999988776543 34422 222  2222  12333334443332  8999


Q ss_pred             EEEcCC
Q 020435          214 CFECVG  219 (326)
Q Consensus       214 v~d~~g  219 (326)
                      +++++|
T Consensus        78 lvnnAg   83 (248)
T 3asu_A           78 LVNNAG   83 (248)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999887

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.62  E-value=0.0039  Score=52.12  Aligned_cols=101  Identities=16%  Similarity=0.147  Sum_probs=68.4

Q ss_pred             hcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHH
Q 020435          134 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       134 ~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~  205 (326)
                      ..+..++.+||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|..   .++.      .+..+.+.+
T Consensus        64 l~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~------~d~~~~~~~  136 (229)
T 2avd_A           64 LARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL------KPALETLDE  136 (229)
T ss_dssp             HHHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE------SCHHHHHHH
T ss_pred             HHHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE------cCHHHHHHH
Confidence            3455678899999987 5888888888763 2399999999988877654    3431   2332      233333333


Q ss_pred             hcC----CCccEEEEcCCc---HHHHHHHHHHhhcCCcEEEEec
Q 020435          206 MTD----GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       206 ~~~----~g~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +..    +.+|+|+.....   ...+..+.+.|+++ |.++...
T Consensus       137 ~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~  179 (229)
T 2avd_A          137 LLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLR  179 (229)
T ss_dssp             HHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             HHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEC
Confidence            321    479999843332   34578889999998 9988764

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.62  E-value=0.0087  Score=51.93  Aligned_cols=80  Identities=24%  Similarity=0.326  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHH----Hhc-CCc-EEEcCCCCCCc-cHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRF-GVT-EFVNSKNCGDK-SVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~~----~~~-g~~-~vi~~~~~~~~-~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+    +.. +.. ..+.. +..+. ++.+.+.+... 
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPA-DMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECC-CTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeC-CCCCHHHHHHHHHHHHHH
Confidence            3679999987 8999999999999999 9999998 44544433    222 322 22211 11112 23333333221 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus       102 ~g~iD~lv~nAg~  114 (281)
T 3v2h_A          102 FGGADILVNNAGV  114 (281)
T ss_dssp             TSSCSEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence             389999998884

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.62  E-value=0.0056  Score=51.93  Aligned_cols=80  Identities=18%  Similarity=0.171  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCc-cHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDK-SVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~-~~~~~i~~~~~--~  209 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    +..+.. ..+..+- .+. .+.+.+.+...  +
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~~   87 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDI-TSEQELSALADFAISKLG   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-TCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCC-CCHHHHHHHHHHHHHhcC
Confidence            4679999987 9999999999988999 999999998765543    223432 2222211 112 22233332211  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++|++++.
T Consensus        88 ~~d~vi~~Ag~   98 (255)
T 1fmc_A           88 KVDILVNNAGG   98 (255)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998873

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.62  E-value=0.01  Score=51.34  Aligned_cols=79  Identities=22%  Similarity=0.296  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC------------hhHHHH----HHhcCCcE-EE--cCCCCCCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI------------SEKFEI----GKRFGVTE-FV--NSKNCGDKS  198 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~------------~~~~~~----~~~~g~~~-vi--~~~~~~~~~  198 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++            .++.+.    ++..+... .+  |..+  .++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~   85 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKD--RAA   85 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHH
Confidence            4789999987 8999999999999999 89999986            333332    23344332 22  2222  122


Q ss_pred             HHHHHHHhcC--CCccEEEEcCCc
Q 020435          199 VSQIIIDMTD--GGADYCFECVGL  220 (326)
Q Consensus       199 ~~~~i~~~~~--~g~d~v~d~~g~  220 (326)
                      +.+.+.+...  +++|++++++|.
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~  109 (281)
T 3s55_A           86 LESFVAEAEDTLGGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCC
Confidence            3333333221  389999998884

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.62  E-value=0.0036  Score=52.73  Aligned_cols=102  Identities=18%  Similarity=0.181  Sum_probs=67.9

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhc-
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT-  207 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~--g~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~-  207 (326)
                      ....++.+||-+|+| .|..+..+++..  +. +|++++.+++..+.+++    .|...-+....   .+..+.+.++. 
T Consensus        68 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~~l~~l~~  142 (232)
T 3cbg_A           68 ISLTGAKQVLEIGVF-RGYSALAMALQLPPDG-QIIACDQDPNATAIAKKYWQKAGVAEKISLRL---GPALATLEQLTQ  142 (232)
T ss_dssp             HHHHTCCEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHHHHHHT
T ss_pred             HHhcCCCEEEEecCC-CCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHh
Confidence            445678899999987 588888899876  44 99999999988877654    34321111111   23344444432 


Q ss_pred             -C--CCccEEE-EcCCc--HHHHHHHHHHhhcCCcEEEEec
Q 020435          208 -D--GGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 -~--~g~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                       +  +.+|+|| |....  ...+..+.+.|+++ |.++.-.
T Consensus       143 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  182 (232)
T 3cbg_A          143 GKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRG-GLMVIDN  182 (232)
T ss_dssp             SSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEE-EEEEEEC
T ss_pred             cCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence             1  4799998 43322  34578889999998 9888754

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.61  E-value=0.019  Score=50.09  Aligned_cols=87  Identities=17%  Similarity=0.160  Sum_probs=62.5

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|.. +  .     .+..+.+.     ++|+||.|+..
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~--~-----~~~~~~~~-----~~D~vi~~v~~   71 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAE-T--A-----STAKAIAE-----QCDVIITMLPN   71 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-E--C-----SSHHHHHH-----HCSEEEECCSS
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCe-e--c-----CCHHHHHh-----CCCEEEEECCC
Confidence            379999999999999988888898 899999999988887776652 1  1     22333332     48999999986


Q ss_pred             HHHHHHHH-------HHhhcCCcEEEEec
Q 020435          221 ASLVQEAY-------ACCRKGWGKTIVLG  242 (326)
Q Consensus       221 ~~~~~~~~-------~~l~~~~G~~v~~g  242 (326)
                      +......+       ..++++ ..++.++
T Consensus        72 ~~~~~~~~~~~~~l~~~l~~~-~~vv~~s   99 (299)
T 1vpd_A           72 SPHVKEVALGENGIIEGAKPG-TVLIDMS   99 (299)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred             HHHHHHHHhCcchHhhcCCCC-CEEEECC
Confidence            55345444       456676 6666554

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.61  E-value=0.0056  Score=51.62  Aligned_cols=78  Identities=18%  Similarity=0.171  Sum_probs=52.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcC--CCEEEEEcCChhHHHHHHhc-CCc-EEEcCCCCCCc-cHHHHHH---HhcCC-
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRF-GVT-EFVNSKNCGDK-SVSQIII---DMTDG-  209 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g--~~~V~~~~~~~~~~~~~~~~-g~~-~vi~~~~~~~~-~~~~~i~---~~~~~-  209 (326)
                      +.++||+|+ |.+|..+++.+...|  . +|++++++.++.+.++++ +.. .++..+- .+. .+.+.+.   +..+. 
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~g~~   80 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTV-TCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCT-TCHHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeec-CCHHHHHHHHHHHHHhcCCC
Confidence            568999987 999999999998899  8 999999998887766654 222 2222211 112 2222222   22332 


Q ss_pred             CccEEEEcCC
Q 020435          210 GADYCFECVG  219 (326)
Q Consensus       210 g~d~v~d~~g  219 (326)
                      ++|++|+++|
T Consensus        81 ~id~li~~Ag   90 (250)
T 1yo6_A           81 GLSLLINNAG   90 (250)
T ss_dssp             CCCEEEECCC
T ss_pred             CCcEEEECCc
Confidence            6999999886

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.60  E-value=0.0067  Score=52.51  Aligned_cols=79  Identities=22%  Similarity=0.168  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC-C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-~  209 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|+++++++++.+.+    +..+.. ..+  |..+  .++..+.+.+... +
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE--AGAGTDLIERAEAIA  108 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS--TTHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC--HHHHHHHHHHHHHhC
Confidence            4789999987 8999999999999999 999999988765443    223432 222  2222  2223222222211 4


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus       109 ~iD~lvnnAg~  119 (275)
T 4imr_A          109 PVDILVINASA  119 (275)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999884

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.60  E-value=0.012  Score=51.86  Aligned_cols=92  Identities=21%  Similarity=0.201  Sum_probs=63.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHH--cCCCEEEEEcCChhH--HHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEE
Q 020435          141 STVVIFGLGSIGLAVAEGARL--CGATRIIGVDVISEK--FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF  215 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~--~g~~~V~~~~~~~~~--~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~  215 (326)
                      -+|.|+|+|.+|...++.+..  .+.+-+.+.++++++  .+.++++|.... .      .+ .+.+.+.++. ++|+||
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~-~------~~-~e~ll~~~~~~~iDvV~   76 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT-Y------AG-VEGLIKLPEFADIDFVF   76 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE-S------SH-HHHHHHSGGGGGEEEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcc-c------CC-HHHHHhccCCCCCcEEE
Confidence            489999999999988888743  456334455566555  556677886421 1      22 3334443333 799999


Q ss_pred             EcCCcHHHHHHHHHHhhc--CCcEEEEe
Q 020435          216 ECVGLASLVQEAYACCRK--GWGKTIVL  241 (326)
Q Consensus       216 d~~g~~~~~~~~~~~l~~--~~G~~v~~  241 (326)
                      +|.+.....+.+..++..  + .+++..
T Consensus        77 ~atp~~~h~~~a~~al~a~~G-k~Vi~e  103 (312)
T 1nvm_B           77 DATSASAHVQNEALLRQAKPG-IRLIDL  103 (312)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTT-CEEEEC
T ss_pred             ECCChHHHHHHHHHHHHhCCC-CEEEEc
Confidence            999987767788888988  8 777764

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.59  E-value=0.0072  Score=51.64  Aligned_cols=79  Identities=15%  Similarity=0.212  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+    +..+.. ..+  |..+  .+++.+.+.+...  
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK--AEDRERLVAMAVNLH   89 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 9999999999999999 999999988765543    223432 222  2222  1222222332221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        90 g~iD~lv~~Ag~  101 (260)
T 2zat_A           90 GGVDILVSNAAV  101 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999998873

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.59  E-value=0.0068  Score=51.01  Aligned_cols=97  Identities=12%  Similarity=0.056  Sum_probs=62.7

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+|||+|+ |.+|..+++.+...| . +|+++++++++.+.+...++. ++..+-   .+ .+.+.+... ++|+||++.
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~-~~~~Dl---~d-~~~~~~~~~-~~D~vv~~a   96 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQ-IIMGDV---LN-HAALKQAMQ-GQDIVYANL   96 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEE-EEECCT---TC-HHHHHHHHT-TCSEEEEEC
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcE-EEEecC---CC-HHHHHHHhc-CCCEEEEcC
Confidence            58999997 999999999999899 7 999999998765543322332 222211   11 223333333 689999988


Q ss_pred             CcHHH---HHHHHHHhhcC-CcEEEEeccC
Q 020435          219 GLASL---VQEAYACCRKG-WGKTIVLGVD  244 (326)
Q Consensus       219 g~~~~---~~~~~~~l~~~-~G~~v~~g~~  244 (326)
                      +....   .+.++..++.. .+++|.++..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~  126 (236)
T 3qvo_A           97 TGEDLDIQANSVIAAMKACDVKRLIFVLSL  126 (236)
T ss_dssp             CSTTHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCchhHHHHHHHHHHHHcCCCEEEEEecc
Confidence            86431   33455555543 1588888763

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.58  E-value=0.015  Score=53.49  Aligned_cols=97  Identities=14%  Similarity=0.179  Sum_probs=68.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      ..++|+|.|.|.+|+.+++.++..|. .|++++.++++.+.+++.|...+. .+.    .-.+.+++.--..+|+|+-+.
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~-GDa----t~~~~L~~agi~~A~~viv~~   76 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFY-GDA----TRMDLLESAGAAKAEVLINAI   76 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEE-SCT----TCHHHHHHTTTTTCSEEEECC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEE-cCC----CCHHHHHhcCCCccCEEEECC
Confidence            35689999999999999999999998 999999999999999988875433 222    112234443223899999999


Q ss_pred             CcHHHHHH---HHHHhhcCCcEEEEec
Q 020435          219 GLASLVQE---AYACCRKGWGKTIVLG  242 (326)
Q Consensus       219 g~~~~~~~---~~~~l~~~~G~~v~~g  242 (326)
                      ++...-..   ..+.+.+. .+++.-.
T Consensus        77 ~~~~~n~~i~~~ar~~~p~-~~Iiara  102 (413)
T 3l9w_A           77 DDPQTNLQLTEMVKEHFPH-LQIIARA  102 (413)
T ss_dssp             SSHHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred             CChHHHHHHHHHHHHhCCC-CeEEEEE
Confidence            98663333   33444555 5555543

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.57  E-value=0.0095  Score=52.08  Aligned_cols=78  Identities=17%  Similarity=0.255  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh---------cCCc-EEE--cCCCCCCccHHHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---------FGVT-EFV--NSKNCGDKSVSQIIID  205 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~---------~g~~-~vi--~~~~~~~~~~~~~i~~  205 (326)
                      .+.+|||+|+ |.+|..+++.+...|+ +|++++++.++.+.+.+         .+.. ..+  |..+  .+++.+.+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~   93 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN--EEEVNNLVKS   93 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC--HHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC--HHHHHHHHHH
Confidence            4679999987 9999999999999999 99999999877654321         1322 222  2222  1223233333


Q ss_pred             hcC--CCccEEEEcCC
Q 020435          206 MTD--GGADYCFECVG  219 (326)
Q Consensus       206 ~~~--~g~d~v~d~~g  219 (326)
                      ...  +++|++|+++|
T Consensus        94 ~~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            221  27999999988

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.57  E-value=0.0019  Score=54.59  Aligned_cols=97  Identities=13%  Similarity=0.123  Sum_probs=66.3

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC----Cc-EEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----VT-EFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g----~~-~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      ..+|.+||-+|.|. |..+..+++..+. +|++++.+++-.+.+++..    .. .++.      .+..+.+.....+.|
T Consensus        58 ~~~G~rVLdiG~G~-G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~F  129 (236)
T 3orh_A           58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK------GLWEDVAPTLPDGHF  129 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE------SCHHHHGGGSCTTCE
T ss_pred             ccCCCeEEEECCCc-cHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEe------ehHHhhcccccccCC
Confidence            36789999999874 7777788877776 8999999999888887532    21 2222      223333333333489


Q ss_pred             cEEE-EcCCc----------HHHHHHHHHHhhcCCcEEEEec
Q 020435          212 DYCF-ECVGL----------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       212 d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      |.|+ |+...          ...+..+.++|+|+ |+++.+.
T Consensus       130 D~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG-G~l~f~~  170 (236)
T 3orh_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN  170 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred             ceEEEeeeecccchhhhcchhhhhhhhhheeCCC-CEEEEEe
Confidence            9985 65432          23466789999998 9998764

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.57  E-value=0.0029  Score=53.63  Aligned_cols=75  Identities=8%  Similarity=-0.047  Sum_probs=51.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-c--CChhHHHHHH-hc-CCcEEEcCCCCCCccHHHHHHHhcCCCccE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-D--VISEKFEIGK-RF-GVTEFVNSKNCGDKSVSQIIIDMTDGGADY  213 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~--~~~~~~~~~~-~~-g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~  213 (326)
                      +.++||+|+ |++|.++++.+...|+ +|+++ +  +++++.+.+. ++ +. .+.+.++  ...+.+.+.+.. +++|+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~--v~~~~~~~~~~~-g~iD~   75 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGT-IALAEQK--PERLVDATLQHG-EAIDT   75 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTE-EECCCCC--GGGHHHHHGGGS-SCEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCC-cccCHHH--HHHHHHHHHHHc-CCCCE
Confidence            368999987 8999999999999999 99999 6  8887766543 34 33 2333222  223333333332 38999


Q ss_pred             EEEcCC
Q 020435          214 CFECVG  219 (326)
Q Consensus       214 v~d~~g  219 (326)
                      +++++|
T Consensus        76 lv~~Ag   81 (244)
T 1zmo_A           76 IVSNDY   81 (244)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999887

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.57  E-value=0.0088  Score=51.74  Aligned_cols=78  Identities=15%  Similarity=0.170  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-Hh----cCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KR----FGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~----~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ .+    .+.. ..+  |..+  .+++.+.+.+... 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA--PPAVMAAVDQALKE  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 8999999999999999 999999998765543 22    2432 222  2222  1223333333322 


Q ss_pred             -CCccEEEEcCC
Q 020435          209 -GGADYCFECVG  219 (326)
Q Consensus       209 -~g~d~v~d~~g  219 (326)
                       +++|++++++|
T Consensus       103 ~g~id~lv~nAg  114 (277)
T 4fc7_A          103 FGRIDILINCAA  114 (277)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence             38999999988

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.57  E-value=0.008  Score=50.84  Aligned_cols=79  Identities=20%  Similarity=0.267  Sum_probs=50.8

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc----CCc-EEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVT-EFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~----g~~-~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. ++    +.. .++..+-.+.+++.+.+.+...  ++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            568999987 9999999999988998 9999999987766532 22    322 2222211011223333333221  27


Q ss_pred             ccEEEEcCC
Q 020435          211 ADYCFECVG  219 (326)
Q Consensus       211 ~d~v~d~~g  219 (326)
                      +|++|+++|
T Consensus        81 id~li~~Ag   89 (250)
T 2cfc_A           81 IDVLVNNAG   89 (250)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999886

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.57  E-value=0.0074  Score=50.20  Aligned_cols=96  Identities=18%  Similarity=0.227  Sum_probs=61.8

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+. .+. .++..+-   .+ .+.+.+... ++|+||++++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~-~~~~~Dl---~d-~~~~~~~~~-~~d~vi~~a~   76 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN-EHL-KVKKADV---SS-LDEVCEVCK-GADAVISAFN   76 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC-TTE-EEECCCT---TC-HHHHHHHHT-TCSEEEECCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc-Cce-EEEEecC---CC-HHHHHHHhc-CCCEEEEeCc
Confidence            58999997 9999999999999998 9999999987654321 112 2332221   11 223333333 6999999988


Q ss_pred             cH-----------HHHHHHHHHhhcC-CcEEEEeccC
Q 020435          220 LA-----------SLVQEAYACCRKG-WGKTIVLGVD  244 (326)
Q Consensus       220 ~~-----------~~~~~~~~~l~~~-~G~~v~~g~~  244 (326)
                      ..           .....+++.+... -.++|.++..
T Consensus        77 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~  113 (227)
T 3dhn_A           77 PGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA  113 (227)
T ss_dssp             C------CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence            64           1234455555553 1378888753

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.56  E-value=0.02  Score=48.81  Aligned_cols=95  Identities=22%  Similarity=0.353  Sum_probs=65.5

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      +.++++||-.|+|. |..++.+++ .|. +|++++.++...+.+++    .+.. .++.      .++.+.   +..+.+
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~------~d~~~~---~~~~~f  185 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE------GSLEAA---LPFGPF  185 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE------SCHHHH---GGGCCE
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEE------CChhhc---CcCCCC
Confidence            57889999999876 666666666 577 99999999998877754    3432 2221      233332   223489


Q ss_pred             cEEEEcCCc---HHHHHHHHHHhhcCCcEEEEeccC
Q 020435          212 DYCFECVGL---ASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       212 d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      |+|+.....   ...+..+.+.|+++ |.+++.+..
T Consensus       186 D~Vv~n~~~~~~~~~l~~~~~~Lkpg-G~lils~~~  220 (254)
T 2nxc_A          186 DLLVANLYAELHAALAPRYREALVPG-GRALLTGIL  220 (254)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEEE
T ss_pred             CEEEECCcHHHHHHHHHHHHHHcCCC-CEEEEEeec
Confidence            999965432   23467788899998 999987653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.55  E-value=0.0022  Score=56.83  Aligned_cols=102  Identities=24%  Similarity=0.315  Sum_probs=70.1

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCCcE--EEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i  203 (326)
                      +.+...++++++||.+|+|. |..+..+++..+. .+|++++.+++..+.+++    .|...  ++..+      ..+..
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d------~~~~~  139 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD------GYYGV  139 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC------GGGCC
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECC------hhhcc
Confidence            45667788999999999876 7788888887541 379999999998877754    34332  22221      11100


Q ss_pred             HHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          204 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .  ..+.+|+|+....-....+.+.+.|+++ |+++..-
T Consensus       140 ~--~~~~fD~Iv~~~~~~~~~~~~~~~Lkpg-G~lvi~~  175 (317)
T 1dl5_A          140 P--EFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVPI  175 (317)
T ss_dssp             G--GGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEEB
T ss_pred             c--cCCCeEEEEEcCCHHHHHHHHHHhcCCC-cEEEEEE
Confidence            0  1237999997666555456788999998 9988764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.55  E-value=0.012  Score=51.53  Aligned_cols=79  Identities=20%  Similarity=0.228  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC------------hhHHHH----HHhcCCcEE-E--cCCCCCCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI------------SEKFEI----GKRFGVTEF-V--NSKNCGDKS  198 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~------------~~~~~~----~~~~g~~~v-i--~~~~~~~~~  198 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|++++++            .++.+.    ++..+.... +  |..+  .++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~  103 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD--FDA  103 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC--HHH
Confidence            4789999987 8999999999999999 99999876            444332    233453322 2  2222  122


Q ss_pred             HHHHHHHhcC--CCccEEEEcCCc
Q 020435          199 VSQIIIDMTD--GGADYCFECVGL  220 (326)
Q Consensus       199 ~~~~i~~~~~--~g~d~v~d~~g~  220 (326)
                      +.+.+.+...  +++|++++++|.
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            2233333222  389999998873

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.55  E-value=0.011  Score=50.94  Aligned_cols=79  Identities=25%  Similarity=0.298  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC------------hhHHHHH----HhcCCcE-EE--cCCCCCCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI------------SEKFEIG----KRFGVTE-FV--NSKNCGDKS  198 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~------------~~~~~~~----~~~g~~~-vi--~~~~~~~~~  198 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++            .++.+.+    +..+... .+  |..+  .++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~   88 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRD--RES   88 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTC--HHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCC--HHH
Confidence            4789999987 8999999999999999 99999876            4443332    3344322 22  2222  122


Q ss_pred             HHHHHHHhcC--CCccEEEEcCCc
Q 020435          199 VSQIIIDMTD--GGADYCFECVGL  220 (326)
Q Consensus       199 ~~~~i~~~~~--~g~d~v~d~~g~  220 (326)
                      +.+.+.+...  +++|++++++|.
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            3333333222  389999999884

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.55  E-value=0.0074  Score=52.47  Aligned_cols=79  Identities=24%  Similarity=0.321  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-----------HHHHHhcCCcE-EE--cCCCCCCccHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-----------FEIGKRFGVTE-FV--NSKNCGDKSVSQII  203 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-----------~~~~~~~g~~~-vi--~~~~~~~~~~~~~i  203 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|++++++.++           .+.++..+... .+  |..+  .+++.+.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~   84 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD--GDAVAAAV   84 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTS--HHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHH
Confidence            4789999987 8999999999988999 99999988762           22333445322 22  2222  12223333


Q ss_pred             HHhcC--CCccEEEEcCCc
Q 020435          204 IDMTD--GGADYCFECVGL  220 (326)
Q Consensus       204 ~~~~~--~g~d~v~d~~g~  220 (326)
                      .+...  +++|++++++|.
T Consensus        85 ~~~~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            33322  289999999884

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.54  E-value=0.0064  Score=52.13  Aligned_cols=79  Identities=25%  Similarity=0.369  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-C-HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcC-C-cEEE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-G-SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFG-V-TEFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g-~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g-~-~~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .++++||+|+ | ++|..+++.+...|+ +|++++++.++.+.+.    +.+ . -+++  |..+  .+++.+.+.+...
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS--TEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC--HHHHHHHHHHHHH
Confidence            4789999987 7 799999999988999 9999999988765532    222 1 1222  2222  1223333333222


Q ss_pred             --CCccEEEEcCCc
Q 020435          209 --GGADYCFECVGL  220 (326)
Q Consensus       209 --~g~d~v~d~~g~  220 (326)
                        +++|++|+++|.
T Consensus        98 ~~g~id~li~~Ag~  111 (266)
T 3o38_A           98 KAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCCcEEEECCCc
Confidence              289999999884

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.54  E-value=0.0054  Score=55.09  Aligned_cols=90  Identities=18%  Similarity=0.206  Sum_probs=66.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.++++...+.+.+.|+..+        .++.+.+.     ..|+|+-+.
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell~-----~aDvV~l~~  228 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV--------EDLNEMLP-----KCDVIVINM  228 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC--------SCHHHHGG-----GCSEEEECS
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc--------CCHHHHHh-----cCCEEEECC
Confidence            47899999999999999999999999 89999988767777777776422        12333222     488998776


Q ss_pred             CcH-H----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 GLA-S----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~-~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ... .    .-...+..++++ ..+|.++.
T Consensus       229 Plt~~t~~li~~~~l~~mk~g-ailIN~aR  257 (351)
T 3jtm_A          229 PLTEKTRGMFNKELIGKLKKG-VLIVNNAR  257 (351)
T ss_dssp             CCCTTTTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred             CCCHHHHHhhcHHHHhcCCCC-CEEEECcC
Confidence            632 1    124667888887 88887764

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.53  E-value=0.0054  Score=52.09  Aligned_cols=79  Identities=23%  Similarity=0.273  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC-hhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~-~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|++++++ +++.+.+    +..+.. .++  |..+  .+++.+.+.+... 
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT--SEACQQLVDEFVAK   82 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999999988999 99999988 6655433    222432 222  2222  1223333333222 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++|++++.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             279999998874

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.53  E-value=0.0059  Score=50.94  Aligned_cols=64  Identities=17%  Similarity=0.169  Sum_probs=44.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.+             .|..+  .+++.+.+.++  +++|+++++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~--~~~v~~~~~~~--g~id~lv~n   66 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISD--EKSVYHYFETI--GAFDHLIVT   66 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTC--HHHHHHHHHHH--CSEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCC--HHHHHHHHHHh--CCCCEEEEC
Confidence            4678999987 8999999998888898 9999987654             22222  12222233332  478888888


Q ss_pred             CCc
Q 020435          218 VGL  220 (326)
Q Consensus       218 ~g~  220 (326)
                      +|.
T Consensus        67 Ag~   69 (223)
T 3uce_A           67 AGS   69 (223)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            773

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.53  E-value=0.012  Score=50.83  Aligned_cols=79  Identities=22%  Similarity=0.253  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC------------hhHHHHH----HhcCCcE-EE--cCCCCCCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI------------SEKFEIG----KRFGVTE-FV--NSKNCGDKS  198 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~------------~~~~~~~----~~~g~~~-vi--~~~~~~~~~  198 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++            .++.+.+    +..+... .+  |..+  .++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD--RAA   85 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC--HHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC--HHH
Confidence            4789999987 8999999999999999 99999876            4443332    3334322 22  2222  122


Q ss_pred             HHHHHHHhcC--CCccEEEEcCCc
Q 020435          199 VSQIIIDMTD--GGADYCFECVGL  220 (326)
Q Consensus       199 ~~~~i~~~~~--~g~d~v~d~~g~  220 (326)
                      +.+.+.+...  +++|++++++|.
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~  109 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGI  109 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCc
Confidence            3233333322  289999998874

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.53  E-value=0.023  Score=50.02  Aligned_cols=88  Identities=16%  Similarity=0.135  Sum_probs=62.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      -.+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+.. .       .+..+.+.     ..|+||-|+.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~-~-------~~~~~~~~-----~aDvvi~~vp   86 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASV-C-------ESPAEVIK-----KCKYTIAMLS   86 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEE-C-------SSHHHHHH-----HCSEEEECCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeE-c-------CCHHHHHH-----hCCEEEEEcC
Confidence            3589999999999999999988998 9999999999988888777531 1       23333333     3788888887


Q ss_pred             cHHHHHHHH-------HHhhcCCcEEEEec
Q 020435          220 LASLVQEAY-------ACCRKGWGKTIVLG  242 (326)
Q Consensus       220 ~~~~~~~~~-------~~l~~~~G~~v~~g  242 (326)
                      .+......+       ..++++ ..++.++
T Consensus        87 ~~~~~~~v~~~~~~l~~~l~~g-~~vv~~s  115 (310)
T 3doj_A           87 DPCAALSVVFDKGGVLEQICEG-KGYIDMS  115 (310)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTT-CEEEECS
T ss_pred             CHHHHHHHHhCchhhhhccCCC-CEEEECC
Confidence            654344444       234554 5555554

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.53  E-value=0.0083  Score=51.97  Aligned_cols=79  Identities=22%  Similarity=0.326  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCC---c-EEE--cCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGV---T-EFV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~---~-~vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.+.   . ..+  |..+  .+++.+.+.+..
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   86 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN--EDETARAVDAVT   86 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC--HHHHHHHHHHHH
Confidence            4789999987 9999999999999999 999999998776543    23332   1 122  2222  122333333332


Q ss_pred             C--CCccEEEEcCCc
Q 020435          208 D--GGADYCFECVGL  220 (326)
Q Consensus       208 ~--~g~d~v~d~~g~  220 (326)
                      .  +++|++++++|.
T Consensus        87 ~~~g~id~lv~nAg~  101 (281)
T 3svt_A           87 AWHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence            2  389999999884

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.52  E-value=0.0092  Score=50.93  Aligned_cols=78  Identities=19%  Similarity=0.250  Sum_probs=50.3

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH--HHHH-H---hcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIG-K---RFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~--~~~~-~---~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      +.++||+|+ |++|.++++.+...|+ +|+++++++++  .+.+ +   ..+.. ..+  |..+  .+++.+.+.+... 
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   78 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD--KANFDSAIDEAAEK   78 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            578999987 9999999999888899 89999988776  4432 2   22432 222  2222  1223333333221 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        79 ~g~iD~lv~nAg~   91 (258)
T 3a28_C           79 LGGFDVLVNNAGI   91 (258)
T ss_dssp             HTCCCEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence             379999998873

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.52  E-value=0.0069  Score=52.45  Aligned_cols=78  Identities=27%  Similarity=0.277  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCC---c-EEE--cCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV---T-EFV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~---~-~vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    ..+.   . ..+  |..+  .+++.+.+.+..
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   81 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT--EDGQDQIINSTL   81 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC--HHHHHHHHHHHH
Confidence            4678999987 9999999999999999 9999999987765432    2232   2 222  2222  122222333322


Q ss_pred             C--CCccEEEEcCC
Q 020435          208 D--GGADYCFECVG  219 (326)
Q Consensus       208 ~--~g~d~v~d~~g  219 (326)
                      .  +++|++++++|
T Consensus        82 ~~~g~iD~lv~nAg   95 (280)
T 1xkq_A           82 KQFGKIDVLVNNAG   95 (280)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence            1  37999999887

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.52  E-value=0.01  Score=48.28  Aligned_cols=97  Identities=15%  Similarity=0.127  Sum_probs=60.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++++.+.....+. +++..+-   .+ .+.+.+... ++|+||++++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~---~~-~~~~~~~~~-~~d~vi~~a~   76 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPA-HVVVGDV---LQ-AADVDKTVA-GQDAVIVLLG   76 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCS-EEEESCT---TS-HHHHHHHHT-TCSEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCce-EEEEecC---CC-HHHHHHHHc-CCCEEEECcc
Confidence            68999997 9999999999988898 99999998876543212223 2332222   11 223333332 6899999988


Q ss_pred             cHH----------HHHHHHHHhhcC-CcEEEEeccC
Q 020435          220 LAS----------LVQEAYACCRKG-WGKTIVLGVD  244 (326)
Q Consensus       220 ~~~----------~~~~~~~~l~~~-~G~~v~~g~~  244 (326)
                      ...          ....+++.+... .++++.++..
T Consensus        77 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             CCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence            532          133444444432 1578877653

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.51  E-value=0.0079  Score=52.21  Aligned_cols=79  Identities=15%  Similarity=0.230  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhc--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++.+++++.+.+    ++.+.. ..+  |..+  .+++.+.+.+..  .
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK--KEEISEVINKILTEH  119 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC--HHHHHHHHHHHHHhc
Confidence            3679999987 9999999999888898 899998887765543    223432 222  2222  122333333322  1


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|+++|.
T Consensus       120 ~~id~li~~Ag~  131 (285)
T 2c07_A          120 KNVDILVNNAGI  131 (285)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.51  E-value=0.007  Score=52.11  Aligned_cols=75  Identities=20%  Similarity=0.259  Sum_probs=47.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC--CCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~--~g~d~v~  215 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++.++.+....+.    .|..+  .....+.+.+...  +++|+++
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~----~Dv~~--~~~~~~~~~~~~~~~g~iD~lv   99 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAADLHLP----GDLRE--AAYADGLPGAVAAGLGRLDIVV   99 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCCSEECC----CCTTS--HHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHhhhccC----cCCCC--HHHHHHHHHHHHHhcCCCCEEE
Confidence            4789999987 8999999999999999 9999998765443221111    11111  1112222222211  3899999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      +++|.
T Consensus       100 nnAg~  104 (266)
T 3uxy_A          100 NNAGV  104 (266)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            98884

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.51  E-value=0.0094  Score=51.46  Aligned_cols=79  Identities=23%  Similarity=0.256  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-------HH----HHHhcCCcE-EE--cCCCCCCccHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FE----IGKRFGVTE-FV--NSKNCGDKSVSQII  203 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-------~~----~~~~~g~~~-vi--~~~~~~~~~~~~~i  203 (326)
                      .++++||+|+ +++|.++++.+...|+ +|+.++++.++       .+    .++..+... .+  |..+  .++..+.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~   81 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIRE--EDQVRAAV   81 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTC--HHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHH
Confidence            4789999987 8999999999999999 99999988653       22    223334322 22  2222  12222233


Q ss_pred             HHhcC--CCccEEEEcCCc
Q 020435          204 IDMTD--GGADYCFECVGL  220 (326)
Q Consensus       204 ~~~~~--~g~d~v~d~~g~  220 (326)
                      .+...  +++|++++++|.
T Consensus        82 ~~~~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCc
Confidence            33222  389999999884

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.50  E-value=0.0078  Score=51.85  Aligned_cols=81  Identities=19%  Similarity=0.265  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC-hhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~-~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++ ++..+.+    ++.+.. .++..+-.+.+++.+.+.++..  +
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4789999987 9999999999999999 99999984 4433332    334432 2332222011233333333322  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus       107 ~id~li~nAg~  117 (271)
T 4iin_A          107 GLSYLVNNAGV  117 (271)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            89999999884

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.50  E-value=0.023  Score=50.29  Aligned_cols=89  Identities=17%  Similarity=0.198  Sum_probs=63.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+.. .       .+..+.+.     ..|+||-|+.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~-~-------~~~~e~~~-----~aDvVi~~vp   96 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATI-H-------EQARAAAR-----DADIVVSMLE   96 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEE-E-------SSHHHHHT-----TCSEEEECCS
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEe-e-------CCHHHHHh-----cCCEEEEECC
Confidence            4589999999999999999988998 9999999999998887777532 1       12222221     5788988888


Q ss_pred             cHHHHHHHH------HHhhcCCcEEEEecc
Q 020435          220 LASLVQEAY------ACCRKGWGKTIVLGV  243 (326)
Q Consensus       220 ~~~~~~~~~------~~l~~~~G~~v~~g~  243 (326)
                      .+......+      ..+.++ ..++..+.
T Consensus        97 ~~~~~~~v~~~~~~~~~l~~~-~~vi~~st  125 (320)
T 4dll_A           97 NGAVVQDVLFAQGVAAAMKPG-SLFLDMAS  125 (320)
T ss_dssp             SHHHHHHHHTTTCHHHHCCTT-CEEEECSC
T ss_pred             CHHHHHHHHcchhHHhhCCCC-CEEEecCC
Confidence            754344433      345665 56665543

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.50  E-value=0.011  Score=50.90  Aligned_cols=80  Identities=24%  Similarity=0.324  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCC---cEEEcCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV---TEFVNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~---~~vi~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ .+++.   -.++..+-.+.+++.+.+.+...  +++
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   93 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   93 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4679999987 9999999999998999 999999987765543 33331   12222221011223333332221  379


Q ss_pred             cEEEEcCC
Q 020435          212 DYCFECVG  219 (326)
Q Consensus       212 d~v~d~~g  219 (326)
                      |++|+++|
T Consensus        94 d~li~~Ag  101 (278)
T 2bgk_A           94 DIMFGNVG  101 (278)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99999887

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=96.48  E-value=0.0079  Score=51.48  Aligned_cols=81  Identities=15%  Similarity=0.128  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~-~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      ++.+|||+|+ |.+|..+++.+.. .|+ +|++++++.++.+.+    +..+.. .++..+-.+.+++.+.+.++..  +
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4678999987 9999999988887 899 999999987765543    222321 2332221011223333333221  2


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++|+++|.
T Consensus        82 ~id~li~~Ag~   92 (276)
T 1wma_A           82 GLDVLVNNAGI   92 (276)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999998873

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.48  E-value=0.047  Score=48.47  Aligned_cols=76  Identities=21%  Similarity=0.250  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh----HHHHHHhc------CCcEEEcCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE----KFEIGKRF------GVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~----~~~~~~~~------g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      .+.+|||+|+ |.+|..+++.+...|. +|++++++..    ..+.++..      ..-.++..+-   .+ .+.+.+..
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl---~d-~~~~~~~~   98 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI---RD-LTTCEQVM   98 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCT---TC-HHHHHHHT
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccC---CC-HHHHHHHh
Confidence            4679999997 9999999999998998 9999998543    33333332      2112332222   11 23444444


Q ss_pred             CCCccEEEEcCCc
Q 020435          208 DGGADYCFECVGL  220 (326)
Q Consensus       208 ~~g~d~v~d~~g~  220 (326)
                      . ++|+||++++.
T Consensus        99 ~-~~d~Vih~A~~  110 (351)
T 3ruf_A           99 K-GVDHVLHQAAL  110 (351)
T ss_dssp             T-TCSEEEECCCC
T ss_pred             c-CCCEEEECCcc
Confidence            3 79999999984

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.47  E-value=0.0069  Score=52.59  Aligned_cols=77  Identities=19%  Similarity=0.259  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc--EEEcCCCCCCc-cHHHHHHHhc--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT--EFVNSKNCGDK-SVSQIIIDMT--D  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~--~vi~~~~~~~~-~~~~~i~~~~--~  208 (326)
                      ++.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+..  .++..+- .+. .+.+.+.+..  -
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~d~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTM-EDMTFAEQFVAQAGKLM  104 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCT-TCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCC-CCHHHHHHHHHHHHHHc
Confidence            4679999987 9999999999988999 9999999988766542    23432  2222211 112 2222222221  1


Q ss_pred             CCccEEEEc
Q 020435          209 GGADYCFEC  217 (326)
Q Consensus       209 ~g~d~v~d~  217 (326)
                      +++|++|++
T Consensus       105 g~iD~li~n  113 (286)
T 1xu9_A          105 GGLDMLILN  113 (286)
T ss_dssp             TSCSEEEEC
T ss_pred             CCCCEEEEC
Confidence            389999988

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.47  E-value=0.01  Score=50.61  Aligned_cols=78  Identities=22%  Similarity=0.280  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH--HHHHHhcCCcE-EE--cCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~--~~~~~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|++++++++.  .+.+++.+... .+  |..+  .+++.+.+.+...  ++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDPAPALAEIARHGVKAVHHPADLSD--VAQIEALFALAEREFGG   79 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTSCCEEEECCCTTS--HHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHhcCCceEEEeCCCCC--HHHHHHHHHHHHHHcCC
Confidence            3678999987 9999999999999999 99999987652  22233334322 22  2222  1223333332221  37


Q ss_pred             ccEEEEcCC
Q 020435          211 ADYCFECVG  219 (326)
Q Consensus       211 ~d~v~d~~g  219 (326)
                      +|++++++|
T Consensus        80 id~lv~~Ag   88 (255)
T 2q2v_A           80 VDILVNNAG   88 (255)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.47  E-value=0.0086  Score=56.07  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=68.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      -.|.+|.|+|.|.+|..+++.++.+|+ +|+++++++.+.......|.. +        .++.+.+     ...|+|+-+
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~-~--------~~l~ell-----~~aDiVi~~  339 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYR-V--------VTMEYAA-----DKADIFVTA  339 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCE-E--------CCHHHHT-----TTCSEEEEC
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCE-e--------CCHHHHH-----hcCCEEEEC
Confidence            468999999999999999999999999 999999998775444455653 2        1222222     158999988


Q ss_pred             CCcHHHH-HHHHHHhhcCCcEEEEeccC
Q 020435          218 VGLASLV-QEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       218 ~g~~~~~-~~~~~~l~~~~G~~v~~g~~  244 (326)
                      .+....+ ...+..++++ ..++.++..
T Consensus       340 ~~t~~lI~~~~l~~MK~g-AilINvgrg  366 (494)
T 3d64_A          340 TGNYHVINHDHMKAMRHN-AIVCNIGHF  366 (494)
T ss_dssp             SSSSCSBCHHHHHHCCTT-EEEEECSSS
T ss_pred             CCcccccCHHHHhhCCCC-cEEEEcCCC
Confidence            7655433 4677889998 888888763

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.46  E-value=0.006  Score=52.25  Aligned_cols=78  Identities=13%  Similarity=0.192  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcC---CCEEEEEcCChhHHHHHHhc---CCc-EEE--cCCCCCCccHHHHHH---H
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCG---ATRIIGVDVISEKFEIGKRF---GVT-EFV--NSKNCGDKSVSQIII---D  205 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g---~~~V~~~~~~~~~~~~~~~~---g~~-~vi--~~~~~~~~~~~~~i~---~  205 (326)
                      ++.++||+|+ |.+|..+++.+...|   . +|++++++.++.+.++++   +.. .++  |..+  .+.+.+.+.   +
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   96 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIEG   96 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCC--hHHHHHHHHHHHH
Confidence            4678999987 999999999998888   7 999999987654433322   322 222  2222  233333333   3


Q ss_pred             hcCC-CccEEEEcCC
Q 020435          206 MTDG-GADYCFECVG  219 (326)
Q Consensus       206 ~~~~-g~d~v~d~~g  219 (326)
                      ..+. ++|++|+++|
T Consensus        97 ~~g~~~id~li~~Ag  111 (267)
T 1sny_A           97 VTKDQGLNVLFNNAG  111 (267)
T ss_dssp             HHGGGCCSEEEECCC
T ss_pred             hcCCCCccEEEECCC
Confidence            3333 6999999887

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.46  E-value=0.0084  Score=51.66  Aligned_cols=79  Identities=16%  Similarity=0.181  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++ +.++.+.+    ++.+.. ..+  |..+  .+++.+.+.+... 
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQ--ESEVEALFAAVIER  103 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4789999987 8999999999999999 8988887 55544433    334432 222  2222  1222223333222 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus       104 ~g~id~lv~nAg~  116 (269)
T 4dmm_A          104 WGRLDVLVNNAGI  116 (269)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             389999998874

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.45  E-value=0.0073  Score=52.90  Aligned_cols=78  Identities=24%  Similarity=0.274  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCC---c-EEE--cCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV---T-EFV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~---~-~vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.    +.+.   . ..+  |..+  .+++.+.+.+..
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~  101 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE--ASGQDDIINTTL  101 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC--HHHHHHHHHHHH
Confidence            4678999987 9999999999999999 9999999987765432    2232   2 222  2222  122223333222


Q ss_pred             C--CCccEEEEcCC
Q 020435          208 D--GGADYCFECVG  219 (326)
Q Consensus       208 ~--~g~d~v~d~~g  219 (326)
                      .  +++|++++++|
T Consensus       102 ~~~g~iD~lvnnAG  115 (297)
T 1xhl_A          102 AKFGKIDILVNNAG  115 (297)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence            1  37999999887

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.45  E-value=0.014  Score=51.71  Aligned_cols=77  Identities=17%  Similarity=0.189  Sum_probs=49.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH----HHHh-cCC-cEEEcCCCCCCccHHHHHHHhcC-CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE----IGKR-FGV-TEFVNSKNCGDKSVSQIIIDMTD-GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~----~~~~-~g~-~~vi~~~~~~~~~~~~~i~~~~~-~g  210 (326)
                      .+.+|||+|+ |.+|..+++.+...|. +|++++++.++.+    .+.. .+. ..++..+- .+.   +.+.+... .+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~d~---~~~~~~~~~~~   78 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFHETDV-SDE---RALARIFDAHP   78 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCT-TCH---HHHHHHHHHSC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEEEeec-CCH---HHHHHHHhccC
Confidence            4579999987 9999999999999999 9999998654422    2221 121 12332221 112   23333332 38


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+||++++.
T Consensus        79 ~d~vih~A~~   88 (341)
T 3enk_A           79 ITAAIHFAAL   88 (341)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECccc
Confidence            9999999874

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.42  E-value=0.016  Score=50.29  Aligned_cols=34  Identities=29%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            4789999987 8999999999999999 99999876

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.41  E-value=0.013  Score=48.86  Aligned_cols=102  Identities=15%  Similarity=0.083  Sum_probs=69.1

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcC-----CCEEEEEcCChhHHHHHHh----cC-----C--cEEEcCCCCCCccH
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCG-----ATRIIGVDVISEKFEIGKR----FG-----V--TEFVNSKNCGDKSV  199 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g-----~~~V~~~~~~~~~~~~~~~----~g-----~--~~vi~~~~~~~~~~  199 (326)
                      .++++++||.+|+|. |..+..+++..+     ..+|++++.+++..+.+++    .+     .  -.++..+.  ...+
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~~~  153 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI--YQVN  153 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG--GGCC
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh--Hhcc
Confidence            578899999999877 888888888875     1289999999988877654    23     1  12332222  0111


Q ss_pred             HHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          200 SQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       200 ~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+...  ..+.+|+|+........+..+.+.|+++ |+++..-.
T Consensus       154 ~~~~~--~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~  194 (227)
T 2pbf_A          154 EEEKK--ELGLFDAIHVGASASELPEILVDLLAEN-GKLIIPIE  194 (227)
T ss_dssp             HHHHH--HHCCEEEEEECSBBSSCCHHHHHHEEEE-EEEEEEEE
T ss_pred             cccCc--cCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEc
Confidence            00001  1237999997776666578889999998 99887744

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.41  E-value=0.0099  Score=51.66  Aligned_cols=79  Identities=20%  Similarity=0.112  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh-hHHHHH----H-hcCCc-EEEcCCCCCC-----ccHHHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIG----K-RFGVT-EFVNSKNCGD-----KSVSQIIID  205 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~-~~~~~~----~-~~g~~-~vi~~~~~~~-----~~~~~~i~~  205 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++ ++.+.+    + ..+.. ..+.-+- .+     +++.+.+.+
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv-~~~~~~~~~v~~~~~~   99 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADL-TNSNVLPASCEEIINS   99 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCC-SCSTTHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeec-CCccCCHHHHHHHHHH
Confidence            4678999987 9999999999988999 999999887 654433    2 23422 2222211 11     222222222


Q ss_pred             hcC--CCccEEEEcCC
Q 020435          206 MTD--GGADYCFECVG  219 (326)
Q Consensus       206 ~~~--~g~d~v~d~~g  219 (326)
                      ...  +++|++|+++|
T Consensus       100 ~~~~~g~iD~lvnnAG  115 (288)
T 2x9g_A          100 CFRAFGRCDVLVNNAS  115 (288)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHhcCCCCEEEECCC
Confidence            221  38999999887

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.41  E-value=0.011  Score=48.57  Aligned_cols=97  Identities=18%  Similarity=0.166  Sum_probs=68.1

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc--EEEcCCCCCCccHHHHHHHhcCCCcc
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      ..+.++.+||-+|+|. |..+..+++. +. +|++++.+++..+.+++.+..  .++..+-   .++      ...+.+|
T Consensus        42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~---~~~------~~~~~~D  109 (218)
T 3ou2_A           42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDL---FDW------TPDRQWD  109 (218)
T ss_dssp             TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECCT---TSC------CCSSCEE
T ss_pred             hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEeccc---ccC------CCCCcee
Confidence            3467788999999876 7777777777 77 999999999999998876532  2222221   111      1223899


Q ss_pred             EEEEcCC-----c---HHHHHHHHHHhhcCCcEEEEeccC
Q 020435          213 YCFECVG-----L---ASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       213 ~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +|+....     .   ...+..+.+.|+++ |.++.....
T Consensus       110 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  148 (218)
T 3ou2_A          110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPG-GVVEFVDVT  148 (218)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence            9986432     2   34578889999998 999888654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.41  E-value=0.03  Score=49.05  Aligned_cols=89  Identities=22%  Similarity=0.209  Sum_probs=62.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|.....+...    +..        ...|+||-|+.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~----e~~--------~~aDvvi~~vp   73 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACGAAASAR----EFA--------GVVDALVILVV   73 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEESSST----TTT--------TTCSEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccCCHH----HHH--------hcCCEEEEECC
Confidence            3589999999999999999888998 9999999999999888877654222111    110        15788888888


Q ss_pred             cHHHHHHHH-------HHhhcCCcEEEEec
Q 020435          220 LASLVQEAY-------ACCRKGWGKTIVLG  242 (326)
Q Consensus       220 ~~~~~~~~~-------~~l~~~~G~~v~~g  242 (326)
                      .+......+       ..++++ ..++..+
T Consensus        74 ~~~~~~~v~~~~~~l~~~l~~g-~ivv~~s  102 (303)
T 3g0o_A           74 NAAQVRQVLFGEDGVAHLMKPG-SAVMVSS  102 (303)
T ss_dssp             SHHHHHHHHC--CCCGGGSCTT-CEEEECS
T ss_pred             CHHHHHHHHhChhhHHhhCCCC-CEEEecC
Confidence            754344443       344554 5555443

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.40  E-value=0.015  Score=51.10  Aligned_cols=101  Identities=19%  Similarity=0.272  Sum_probs=69.5

Q ss_pred             hhhcc-cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHH
Q 020435          132 WRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  203 (326)
Q Consensus       132 ~~~~~-~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i  203 (326)
                      .+... ++++++||-+|+|. |..+..+++..+. +|++++.+++..+.+++    .|..   .++..+-   .++    
T Consensus       109 ~~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~----  179 (312)
T 3vc1_A          109 MDHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM---LDT----  179 (312)
T ss_dssp             HTTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC----
T ss_pred             HHHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hcC----
Confidence            34444 78899999999875 7777788887787 99999999998877654    3321   2332222   111    


Q ss_pred             HHhcCCCccEEEEc-----CCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          204 IDMTDGGADYCFEC-----VGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       204 ~~~~~~g~d~v~d~-----~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       ....+.+|+|+..     .+-...+..+.+.|+++ |+++....
T Consensus       180 -~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  222 (312)
T 3vc1_A          180 -PFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG-GRYVTITG  222 (312)
T ss_dssp             -CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -CCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC-cEEEEEEc
Confidence             0122389999863     23355688999999998 99998764

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.39  E-value=0.016  Score=48.82  Aligned_cols=72  Identities=17%  Similarity=0.021  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhcCCCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~--g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      .+.+|||+|+ |.+|..+++.+...  |. +|+++++++++.+.+ ..++..+ .|..+      .+.+.+... ++|+|
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~D~~d------~~~~~~~~~-~~d~v   73 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADVFIGDITD------ADSINPAFQ-GIDAL   73 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTEEECCTTS------HHHHHHHHT-TCSEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeEEEecCCC------HHHHHHHHc-CCCEE
Confidence            3678999987 99999999998888  78 999999988776544 1223222 12222      233444333 69999


Q ss_pred             EEcCC
Q 020435          215 FECVG  219 (326)
Q Consensus       215 ~d~~g  219 (326)
                      |++++
T Consensus        74 i~~a~   78 (253)
T 1xq6_A           74 VILTS   78 (253)
T ss_dssp             EECCC
T ss_pred             EEecc
Confidence            99887

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.39  E-value=0.0083  Score=51.82  Aligned_cols=77  Identities=16%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcC---CcEEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG---VTEFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g---~~~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++.   .-..+  |..+  .+++.+.+.+...  +++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRD--RAAMSAAVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHTCCGGGSSC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHhCCC
Confidence            68999987 8999999999999999 9999999988766543 232   11222  2222  1233333433322  278


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        99 D~lvnnAG~  107 (272)
T 2nwq_A           99 RGLINNAGL  107 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998873

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.38  E-value=0.034  Score=49.09  Aligned_cols=90  Identities=19%  Similarity=0.256  Sum_probs=63.8

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCC-EEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCcc-HHHHHHHhcCCCccEEEEc
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKS-VSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~-~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~-~~~~i~~~~~~g~d~v~d~  217 (326)
                      .+|.|+|.|.+|...++.++..|.. +|++.++++++.+.+++.|.. ...+..+    . ..        .++|+||-|
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~----~~~~--------~~aDvVila  101 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA----KVED--------FSPDFVMLS  101 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTT----GGGG--------GCCSEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHH----HHhh--------ccCCEEEEe
Confidence            6899999999999999999888853 799999999999988888852 2322111    1 11        168999999


Q ss_pred             CCcHH---HHHHHHHHhhcCCcEEEEecc
Q 020435          218 VGLAS---LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       218 ~g~~~---~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +....   .+......++++ ..++.++.
T Consensus       102 vp~~~~~~vl~~l~~~l~~~-~iv~d~~S  129 (314)
T 3ggo_A          102 SPVRTFREIAKKLSYILSED-ATVTDQGS  129 (314)
T ss_dssp             SCGGGHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred             CCHHHHHHHHHHHhhccCCC-cEEEECCC
Confidence            88754   233444556676 66665543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.38  E-value=0.02  Score=50.58  Aligned_cols=88  Identities=17%  Similarity=0.291  Sum_probs=64.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++..|. +|++.++++++. .+.+.|+.. .        ++.+.+.     ..|+|+.+.
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~-~--------~l~ell~-----~aDvVvl~~  204 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKA-V--------SLEELLK-----NSDVISLHV  204 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEE-C--------CHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCcee-c--------CHHHHHh-----hCCEEEEec
Confidence            57899999999999999999999999 999999887764 456677642 1        2223332     489999877


Q ss_pred             CcHH----HH-HHHHHHhhcCCcEEEEecc
Q 020435          219 GLAS----LV-QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~~----~~-~~~~~~l~~~~G~~v~~g~  243 (326)
                      ....    .+ ...+..++++ +.++.++.
T Consensus       205 P~~~~t~~li~~~~l~~mk~g-a~lIn~ar  233 (313)
T 2ekl_A          205 TVSKDAKPIIDYPQFELMKDN-VIIVNTSR  233 (313)
T ss_dssp             CCCTTSCCSBCHHHHHHSCTT-EEEEESSC
T ss_pred             cCChHHHHhhCHHHHhcCCCC-CEEEECCC
Confidence            6422    12 4567788997 88887765

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.38  E-value=0.023  Score=48.91  Aligned_cols=87  Identities=15%  Similarity=0.171  Sum_probs=62.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      +.+++|+|+|++|.+++..+...|. +|+++.|+.++.+.+.+++. .+...++     +       .  .+|+||+|.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~~-~~~~~~~-----l-------~--~~DiVInaTp  181 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGC-DCFMEPP-----K-------S--AFDLIINATS  181 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHTC-EEESSCC-----S-------S--CCSEEEECCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCC-eEecHHH-----h-------c--cCCEEEEccc
Confidence            8899999999999999999999995 99999999998776557775 3444333     1       0  5999999877


Q ss_pred             cH-----HH-HHHHHHHhhcCCcEEEEecc
Q 020435          220 LA-----SL-VQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       220 ~~-----~~-~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..     .. ...+...++++ ..++.+..
T Consensus       182 ~Gm~~~~~l~~~~l~~~l~~~-~~v~D~vY  210 (269)
T 3phh_A          182 ASLHNELPLNKEVLKGYFKEG-KLAYDLAY  210 (269)
T ss_dssp             TCCCCSCSSCHHHHHHHHHHC-SEEEESCC
T ss_pred             CCCCCCCCCChHHHHhhCCCC-CEEEEeCC
Confidence            43     11 11223367787 77777643

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.38  E-value=0.0094  Score=50.84  Aligned_cols=77  Identities=19%  Similarity=0.321  Sum_probs=48.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc-EEE--cCCCCCCccHHHHHHHhc-CCCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFV--NSKNCGDKSVSQIIIDMT-DGGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~-~~g~d~  213 (326)
                      .+.++||+|+ +++|.++++.+...|+ +|+++++..++.  ...++.. ..+  |..+  .+++.+.+.... -+++|+
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~--~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~g~id~   82 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGEDV--VADLGDRARFAAADVTD--EAAVASALDLAETMGTLRI   82 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHHH--HHHTCTTEEEEECCTTC--HHHHHHHHHHHHHHSCEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHHH--HHhcCCceEEEECCCCC--HHHHHHHHHHHHHhCCCCE
Confidence            4679999987 8999999999988999 999998855433  3334432 222  2222  122222222111 238999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +++++|.
T Consensus        83 lv~nAg~   89 (257)
T 3tl3_A           83 VVNCAGT   89 (257)
T ss_dssp             EEECGGG
T ss_pred             EEECCCC
Confidence            9999883

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.37  E-value=0.019  Score=48.24  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=66.2

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      .++++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++. . .++.      .+..+.+.....+.+|+|+
T Consensus        38 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~-~-~~~~------~d~~~~~~~~~~~~fD~i~  106 (240)
T 3dli_A           38 YFKGCRRVLDIGCGR-GEFLELCKEE-GI-ESIGVDINEDMIKFCEGK-F-NVVK------SDAIEYLKSLPDKYLDGVM  106 (240)
T ss_dssp             GTTTCSCEEEETCTT-THHHHHHHHH-TC-CEEEECSCHHHHHHHHTT-S-EEEC------SCHHHHHHTSCTTCBSEEE
T ss_pred             hhcCCCeEEEEeCCC-CHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh-c-ceee------ccHHHHhhhcCCCCeeEEE
Confidence            356789999998764 5555566665 87 899999999999888775 2 3332      2333333333344899998


Q ss_pred             EcC-----Cc---HHHHHHHHHHhhcCCcEEEEecc
Q 020435          216 ECV-----GL---ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       216 d~~-----g~---~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ...     ..   ...+..+.+.|+++ |.++....
T Consensus       107 ~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  141 (240)
T 3dli_A          107 ISHFVEHLDPERLFELLSLCYSKMKYS-SYIVIESP  141 (240)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHBCTT-CCEEEEEE
T ss_pred             ECCchhhCCcHHHHHHHHHHHHHcCCC-cEEEEEeC
Confidence            532     22   34578889999998 99987654

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.37  E-value=0.011  Score=52.25  Aligned_cols=81  Identities=25%  Similarity=0.310  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC----------hhHHHH----HHhcCCcEEEcCCCCCCc-cHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI----------SEKFEI----GKRFGVTEFVNSKNCGDK-SVSQI  202 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~----------~~~~~~----~~~~g~~~vi~~~~~~~~-~~~~~  202 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++          .++.+.    ++..+....+..-+..+. ++.+.
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            4789999987 8999999999989999 99999876          343332    333454322222221112 22222


Q ss_pred             HHHhcC--CCccEEEEcCCc
Q 020435          203 IIDMTD--GGADYCFECVGL  220 (326)
Q Consensus       203 i~~~~~--~g~d~v~d~~g~  220 (326)
                      +.+...  +++|++++++|.
T Consensus       105 ~~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A          105 IQTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCC
Confidence            333222  389999998884

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.36  E-value=0.013  Score=49.87  Aligned_cols=80  Identities=15%  Similarity=0.226  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh--HHHHHHhc--CCc-EEE--cCCCCCC-ccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRF--GVT-EFV--NSKNCGD-KSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~--~~~~~~~~--g~~-~vi--~~~~~~~-~~~~~~i~~~~~-  208 (326)
                      ++.++||+|+ |.+|..+++.+...|+..|++++++++  ..+.+.+.  +.. .++  |..+  . +++.+.+.+... 
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTV--PVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS--CHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC--ChHHHHHHHHHHHHh
Confidence            4679999987 999999999999999833888888763  33444332  221 222  2222  1 233333333222 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++|+++|.
T Consensus        82 ~g~id~lv~~Ag~   94 (254)
T 1sby_A           82 LKTVDILINGAGI   94 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence             379999999873

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.35  E-value=0.018  Score=48.99  Aligned_cols=99  Identities=17%  Similarity=0.277  Sum_probs=66.5

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHH
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~--g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~  205 (326)
                      ....++.+||-+|+|. |..++.+++.+  +. +|++++.+++..+.+++    .|..   .++.      .+..+.+..
T Consensus        75 ~~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~------gda~~~l~~  146 (247)
T 1sui_A           75 LKLINAKNTMEIGVYT-GYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFRE------GPALPVLDE  146 (247)
T ss_dssp             HHHTTCCEEEEECCGG-GHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE------SCHHHHHHH
T ss_pred             HHhhCcCEEEEeCCCc-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE------CCHHHHHHH
Confidence            3455778999998765 77778888876  45 99999999988777654    3432   2222      233333333


Q ss_pred             hc-----CCCccEEEEcCC---cHHHHHHHHHHhhcCCcEEEEec
Q 020435          206 MT-----DGGADYCFECVG---LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       206 ~~-----~~g~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +.     .+.||+||-...   ....+..+.+.|+++ |.++.-.
T Consensus       147 l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~  190 (247)
T 1sui_A          147 MIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN  190 (247)
T ss_dssp             HHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEEC
T ss_pred             HHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCC-eEEEEec
Confidence            31     348999983222   244577889999998 9987653

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.34  E-value=0.031  Score=49.80  Aligned_cols=129  Identities=16%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             CEEEEEccCHHHHHHHHHHH-H-cCCCEEE-EEcCChhHHHH-HHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEE
Q 020435          141 STVVIFGLGSIGLAVAEGAR-L-CGATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF  215 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~-~-~g~~~V~-~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~  215 (326)
                      -+|.|+|+|.+|...++.++ . .+. +++ +.++++++.+. .+++|...+.+       ++.+    +... ++|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~-~~vav~d~~~~~~~~~a~~~g~~~~~~-------~~~~----~l~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGV-KLVAACALDSNQLEWAKNELGVETTYT-------NYKD----MIDTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSE-EEEEEECSCHHHHHHHHHTTCCSEEES-------CHHH----HHTTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEecCCHHHHHHHHHHhCCCcccC-------CHHH----HhcCCCCCEEE
Confidence            48999999999998888776 4 466 554 55777777655 45577654442       2332    2223 799999


Q ss_pred             EcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHH---HH----hc-CCEEEeeeccCCCCCCCHHHHHHHHhC
Q 020435          216 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE---VL----HS-GKILMGSLFGGLKAKSDIPILLKRYMD  287 (326)
Q Consensus       216 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~~----~~-~~~i~~~~~~~~~~~~~~~~~~~l~~~  287 (326)
                      .|.........+..+++.+  .-+++...     +..+...   +.    .+ ++.+.-..  +......++.+.+++++
T Consensus        77 i~tp~~~h~~~~~~al~~G--~~v~~eKp-----~~~~~~~~~~l~~~a~~~~~~~~~~~~--~~r~~p~~~~~~~~i~~  147 (346)
T 3cea_A           77 IVAPTPFHPEMTIYAMNAG--LNVFCEKP-----LGLDFNEVDEMAKVIKSHPNQIFQSGF--MRRYDDSYRYAKKIVDN  147 (346)
T ss_dssp             ECSCGGGHHHHHHHHHHTT--CEEEECSC-----CCSCHHHHHHHHHHHHTCTTSCEECCC--GGGTCHHHHHHHHHHHT
T ss_pred             EeCChHhHHHHHHHHHHCC--CEEEEcCC-----CCCCHHHHHHHHHHHHhCCCCeEEEec--ccccCHHHHHHHHHHHc
Confidence            9999887688888888875  55555321     2222221   21    23 44433221  11123358888899998


Q ss_pred             CCC
Q 020435          288 KEL  290 (326)
Q Consensus       288 g~~  290 (326)
                      |.+
T Consensus       148 g~i  150 (346)
T 3cea_A          148 GDI  150 (346)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            865

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.34  E-value=0.011  Score=49.75  Aligned_cols=80  Identities=21%  Similarity=0.287  Sum_probs=48.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHHH----HhcCCc-EEEcCCCCCCc-cHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVT-EFVNSKNCGDK-SVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~~~~~~~----~~~g~~-~vi~~~~~~~~-~~~~~i~~~~~--  208 (326)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++ .+++++.+.+    +..+.. ..+..+- .+. ++.+.+.+...  
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~   81 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDV-KNPEDVENMVKTAMDAF   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCT-TSHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCC-CCHHHHHHHHHHHHHhc
Confidence            4678999987 9999999999999999 89988 5665554432    233432 2222211 112 23233332221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|+++|.
T Consensus        82 ~~~d~vi~~Ag~   93 (247)
T 2hq1_A           82 GRIDILVNNAGI   93 (247)
T ss_dssp             SCCCEEEECC--
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.34  E-value=0.014  Score=51.58  Aligned_cols=79  Identities=20%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC------------hhHHHH----HHhcCCcE-EE--cCCCCCCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI------------SEKFEI----GKRFGVTE-FV--NSKNCGDKS  198 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~------------~~~~~~----~~~~g~~~-vi--~~~~~~~~~  198 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++            .++.+.    ++..+... .+  |..+  .++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~  121 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRD--LAS  121 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHH
Confidence            5789999987 8999999999999999 99998765            333332    23344332 22  2222  122


Q ss_pred             HHHHHHHhcC--CCccEEEEcCCc
Q 020435          199 VSQIIIDMTD--GGADYCFECVGL  220 (326)
Q Consensus       199 ~~~~i~~~~~--~g~d~v~d~~g~  220 (326)
                      +.+.+.+...  +++|++|+++|.
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            3333333222  389999999884

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.33  E-value=0.016  Score=50.53  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=35.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEc-CChhHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG  180 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~-~~~~~~~~~  180 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++ +++++.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence            4678999987 8999999999999999 999999 888766543

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.33  E-value=0.0068  Score=52.24  Aligned_cols=77  Identities=21%  Similarity=0.308  Sum_probs=49.4

Q ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhcC--CCcc
Q 020435          137 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGAD  212 (326)
Q Consensus       137 ~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~g~d  212 (326)
                      -..+++|||+|+ |++|.++++.+...|+ +|+++++++++...    ....+ .|..+  .+++.+.+.+...  +++|
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~----~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD   83 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDVN----VSDHFKIDVTN--EEEVKEAVEKTTKKYGRID   83 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CTT----SSEEEECCTTC--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhccC----ceeEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            346889999987 8999999999999999 99999987654421    11111 23222  1223333333222  3899


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      ++++++|.
T Consensus        84 ~lv~nAg~   91 (269)
T 3vtz_A           84 ILVNNAGI   91 (269)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999874

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.33  E-value=0.02  Score=49.41  Aligned_cols=91  Identities=8%  Similarity=-0.001  Sum_probs=60.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCC--cEEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--TEFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~--~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      .+.+++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+ ++++.  ..++..++     +.       ...+|+||
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~-----l~-------~~~~DivI  186 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEA-----LE-------GQSFDIVV  186 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG-----GT-------TCCCSEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH-----hc-------ccCCCEEE
Confidence            578999999999999999988889976999999999887654 44543  23333222     11       13799999


Q ss_pred             EcCCcHHHHH---HHHHHhhcCCcEEEEec
Q 020435          216 ECVGLASLVQ---EAYACCRKGWGKTIVLG  242 (326)
Q Consensus       216 d~~g~~~~~~---~~~~~l~~~~G~~v~~g  242 (326)
                      +|.+....-.   .....++++ ..++.+.
T Consensus       187 naTp~gm~~~~~~i~~~~l~~~-~~V~Dlv  215 (272)
T 3pwz_A          187 NATSASLTADLPPLPADVLGEA-ALAYELA  215 (272)
T ss_dssp             ECSSGGGGTCCCCCCGGGGTTC-SEEEESS
T ss_pred             ECCCCCCCCCCCCCCHHHhCcC-CEEEEee
Confidence            9987643100   012346665 5555553

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.32  E-value=0.039  Score=50.43  Aligned_cols=111  Identities=15%  Similarity=0.129  Sum_probs=71.3

Q ss_pred             hhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-----------cCC--cE--EEcC
Q 020435          127 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----------FGV--TE--FVNS  191 (326)
Q Consensus       127 a~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-----------~g~--~~--vi~~  191 (326)
                      .+..+.+..+++++++||=+|+|. |..++++|+..|+.+|++++.+++..+.+++           +|.  ..  ++..
T Consensus       161 ~i~~il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G  239 (438)
T 3uwp_A          161 LVAQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  239 (438)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESCTT-SHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence            344466778899999999999876 7788888888888569999999865544432           332  22  3322


Q ss_pred             CCCCCccHHHHHHHhcCCCccEEEE-cC-Cc---HHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          192 KNCGDKSVSQIIIDMTDGGADYCFE-CV-GL---ASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       192 ~~~~~~~~~~~i~~~~~~g~d~v~d-~~-g~---~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      +- ....+.+.+     ..+|+||- +. -.   ...+....+.|++| |++|.+....
T Consensus       240 D~-~~lp~~d~~-----~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPG-GrIVssE~f~  291 (438)
T 3uwp_A          240 DF-LSEEWRERI-----ANTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSKPFA  291 (438)
T ss_dssp             CT-TSHHHHHHH-----HTCSEEEECCTTCCHHHHHHHHHHHTTSCTT-CEEEESSCSS
T ss_pred             cc-cCCcccccc-----CCccEEEEcccccCchHHHHHHHHHHcCCCC-cEEEEeeccc
Confidence            22 112222111     15899983 22 11   22356778899998 9999886543

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.32  E-value=0.014  Score=51.64  Aligned_cols=78  Identities=22%  Similarity=0.209  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC---------ChhHHHH----HHhcCCcEEEcCCCCCCccHHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV---------ISEKFEI----GKRFGVTEFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~---------~~~~~~~----~~~~g~~~vi~~~~~~~~~~~~~i~  204 (326)
                      .+.++||+|+ |++|..+++.+...|+ +|+++++         +.++.+.    ++..+...+.|..+  ..++.+.+.
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~--~~~~~~~~~   84 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS--VEAGEKLVK   84 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC--GGGHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCC--HHHHHHHHH
Confidence            4678999987 8999999999999999 8998643         4444432    33345444455544  222323333


Q ss_pred             Hhc--CCCccEEEEcCC
Q 020435          205 DMT--DGGADYCFECVG  219 (326)
Q Consensus       205 ~~~--~~g~d~v~d~~g  219 (326)
                      +..  -+++|++|+++|
T Consensus        85 ~~~~~~g~iD~lVnnAG  101 (319)
T 1gz6_A           85 TALDTFGRIDVVVNNAG  101 (319)
T ss_dssp             HHHHHTSCCCEEEECCC
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            222  138999999887

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.32  E-value=0.0086  Score=50.88  Aligned_cols=75  Identities=20%  Similarity=0.293  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhc--CCCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMT--DGGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~--~~g~d~v  214 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|++++++++.    +..+...+ .|..+  .+++.+.+.+..  -+++|++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~g~id~l   78 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVAD--AAQVAQVCQRLLAETERLDAL   78 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTC--HHHHHHHHHHHHHHCSCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4679999987 9999999999999999 99999987652    22342211 23222  122333333322  1389999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      ++++|.
T Consensus        79 v~~Ag~   84 (250)
T 2fwm_X           79 VNAAGI   84 (250)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999874

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.32  E-value=0.013  Score=50.65  Aligned_cols=81  Identities=17%  Similarity=0.284  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-CH--HHHHHHHHHHHcCCCEEEEEcCCh--hHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhc--CCC
Q 020435          139 VGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVIS--EKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMT--DGG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~--~G~~a~~la~~~g~~~V~~~~~~~--~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~--~~g  210 (326)
                      ++.++||+|+ |.  +|.++++.+...|+ +|++++++.  +..+.+.+ .+....+..+-.+.+++.+.+.+..  -++
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            4789999985 44  99999999989999 999999887  55555433 3432333222101122333333322  138


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus       104 id~li~nAg~  113 (280)
T 3nrc_A          104 LDAIVHSIAF  113 (280)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999998873

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.30  E-value=0.016  Score=51.48  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=35.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEc-CChhHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG  180 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~-~~~~~~~~~  180 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            4678999987 9999999999999999 999999 888776543

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.022  Score=49.54  Aligned_cols=102  Identities=21%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             cccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCC--CEEEEEcCChhHH
Q 020435          101 DIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGA--TRIIGVDVISEKF  177 (326)
Q Consensus       101 ~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~--~~V~~~~~~~~~~  177 (326)
                      +.+++.|.+..|+....            .+..    -.+.++||+|+ |++|.++++.+...|+  .+|+.++++.++.
T Consensus        10 ~~~~~~~~~~~m~~~~~------------~~~~----l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~   73 (287)
T 3rku_A           10 HSSFLVPRGSHMSQGRK------------AAER----LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKL   73 (287)
T ss_dssp             ----------CCTTCHH------------HHHH----HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             ccceeeecCcccccCcc------------chhh----cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHH
Confidence            45677777777653321            0111    14789999987 8999998877665554  2899999998877


Q ss_pred             HHHHh-c-----CCc-EEE--cCCCCCCccHHHHHHHhcCC--CccEEEEcCCc
Q 020435          178 EIGKR-F-----GVT-EFV--NSKNCGDKSVSQIIIDMTDG--GADYCFECVGL  220 (326)
Q Consensus       178 ~~~~~-~-----g~~-~vi--~~~~~~~~~~~~~i~~~~~~--g~d~v~d~~g~  220 (326)
                      +.+.+ +     +.. ..+  |..+  .+++.+.+.+....  ++|++++++|.
T Consensus        74 ~~~~~~l~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD~lVnnAG~  125 (287)
T 3rku_A           74 EELKKTIDQEFPNAKVHVAQLDITQ--AEKIKPFIENLPQEFKDIDILVNNAGK  125 (287)
T ss_dssp             HHHHHHHHHHCTTCEEEEEECCTTC--GGGHHHHHHTSCGGGCSCCEEEECCCC
T ss_pred             HHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            65432 1     322 222  3222  24444445544333  89999998883

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.29  E-value=0.0068  Score=52.11  Aligned_cols=73  Identities=16%  Similarity=0.187  Sum_probs=47.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEE--cCCCCCCccHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV--NSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      +|+++||+|+ ++||.+.++.+...|+ +|+.+++++++     .......+  |..+  .++..+.+.+...  +++|+
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~-----~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G~iDi   81 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPE-----GLPEELFVEADLTT--KEGCAIVAEATRQRLGGVDV   81 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCT-----TSCTTTEEECCTTS--HHHHHHHHHHHHHHTSSCSE
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchh-----CCCcEEEEEcCCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            5889999987 8999999999999999 99999987542     11111112  2222  1222222232221  38999


Q ss_pred             EEEcCC
Q 020435          214 CFECVG  219 (326)
Q Consensus       214 v~d~~g  219 (326)
                      +++++|
T Consensus        82 lVnnAG   87 (261)
T 4h15_A           82 IVHMLG   87 (261)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999876

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.28  E-value=0.012  Score=49.65  Aligned_cols=100  Identities=17%  Similarity=0.231  Sum_probs=65.9

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHHh
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ....++.+||-+|+|. |..++.+++.++ -.+|++++.+++..+.+++    .|..   .++.      .+..+.+..+
T Consensus        66 ~~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~------gda~~~l~~l  138 (237)
T 3c3y_A           66 LKLVNAKKTIEVGVFT-GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIE------SDAMLALDNL  138 (237)
T ss_dssp             HHHTTCCEEEEECCTT-SHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE------SCHHHHHHHH
T ss_pred             HHhhCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE------cCHHHHHHHH
Confidence            4455778999998765 777778888763 2399999999988777654    3542   2232      2333333333


Q ss_pred             c-----CCCccEEEEcCCc---HHHHHHHHHHhhcCCcEEEEec
Q 020435          207 T-----DGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       207 ~-----~~g~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .     .+.+|+||-....   ...++.+.+.|+++ |.++.-.
T Consensus       139 ~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG-G~lv~d~  181 (237)
T 3c3y_A          139 LQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVG-GIVAYDN  181 (237)
T ss_dssp             HHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             HhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCC-eEEEEec
Confidence            1     3489999843322   34577889999998 8887643

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.28  E-value=0.012  Score=52.30  Aligned_cols=77  Identities=19%  Similarity=0.214  Sum_probs=49.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC-----hhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHh
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-----SEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~-----~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~  206 (326)
                      +.++||+|+ |++|.++++.+...|+ +|++++++     +++.+.+    +..+.. ..+  |..+  .+++.+.+.+.
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd--~~~v~~~~~~~   81 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQS--QVSVDRAIDQI   81 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHH
Confidence            578999987 9999999999999999 99988765     3333333    223432 222  2222  22333333333


Q ss_pred             cC--CCccEEEEcCC
Q 020435          207 TD--GGADYCFECVG  219 (326)
Q Consensus       207 ~~--~g~d~v~d~~g  219 (326)
                      ..  +++|++++++|
T Consensus        82 ~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           82 IGEDGRIDVLIHNAG   96 (324)
T ss_dssp             HHHHSCCSEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence            22  38999999998

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.28  E-value=0.01  Score=49.35  Aligned_cols=100  Identities=15%  Similarity=0.152  Sum_probs=66.9

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHH
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~--g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~  205 (326)
                      ....++.+||-+|+|. |..+..+++..  +. +|++++.+++..+.+++    .|..   .++.      .+..+.+..
T Consensus        54 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~------~d~~~~~~~  125 (223)
T 3duw_A           54 VQIQGARNILEIGTLG-GYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERANLNDRVEVRT------GLALDSLQQ  125 (223)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE------SCHHHHHHH
T ss_pred             HHhhCCCEEEEecCCc-cHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE------cCHHHHHHH
Confidence            4556789999999875 77788888876  45 99999999988777653    3432   2332      233333333


Q ss_pred             hc---CCCccEEEEcCC-c--HHHHHHHHHHhhcCCcEEEEecc
Q 020435          206 MT---DGGADYCFECVG-L--ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       206 ~~---~~g~d~v~d~~g-~--~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.   .+.+|+||-... .  ...+..+.+.|+++ |.++.-..
T Consensus       126 ~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~~  168 (223)
T 3duw_A          126 IENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPG-TVIIGDNV  168 (223)
T ss_dssp             HHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEESC
T ss_pred             HHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence            32   136999983332 2  34577889999998 98776543

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.27  E-value=0.011  Score=50.67  Aligned_cols=74  Identities=19%  Similarity=0.242  Sum_probs=48.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhcC--CCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~g~d~v  214 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++     ...+..+ .|..+  .+++.+.+.+...  +++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g~iD~l   78 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKYDHIECDVTN--PDQVKASIDHIFKEYGSISVL   78 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSSEEEECCTTC--HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCceEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4679999987 9999999999999999 99999987665     1112111 22222  1223333333222  279999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      ++++|.
T Consensus        79 v~~Ag~   84 (264)
T 2dtx_A           79 VNNAGI   84 (264)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            998873

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.27  E-value=0.016  Score=49.61  Aligned_cols=78  Identities=17%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCCh---hHHHHHHh-cCCcEEE--cCCCCCCccHHHHHHHhcCC
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS---EKFEIGKR-FGVTEFV--NSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~---~~~~~~~~-~g~~~vi--~~~~~~~~~~~~~i~~~~~~  209 (326)
                      .+.++||+|+   |.+|.++++.+...|+ +|+++++++   +..+.+.+ .+..+.+  |..+  .+++.+.+.+....
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE--DASIDTMFAELGKV   84 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCC--HHHHHHHHHHHHHH
Confidence            4678999974   6999999999988999 999999876   23333322 3322333  3222  12333334433332


Q ss_pred             --CccEEEEcCC
Q 020435          210 --GADYCFECVG  219 (326)
Q Consensus       210 --g~d~v~d~~g  219 (326)
                        ++|++++++|
T Consensus        85 ~g~iD~lv~~Ag   96 (265)
T 1qsg_A           85 WPKFDGFVHSIG   96 (265)
T ss_dssp             CSSEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence              8999999887

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.26  E-value=0.01  Score=55.37  Aligned_cols=91  Identities=20%  Similarity=0.264  Sum_probs=67.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      -.|.+|+|+|.|.+|..+++.++.+|+ +|++++++..+...+...|.. +        .++.+.+     ...|+|+-+
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~--------~~l~ell-----~~aDiVi~~  319 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-V--------VTLDEIV-----DKGDFFITC  319 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-E--------CCHHHHT-----TTCSEEEEC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-e--------cCHHHHH-----hcCCEEEEC
Confidence            468999999999999999999999999 999999998776455555652 2        1222222     158999988


Q ss_pred             CCcHHHH-HHHHHHhhcCCcEEEEeccC
Q 020435          218 VGLASLV-QEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       218 ~g~~~~~-~~~~~~l~~~~G~~v~~g~~  244 (326)
                      .+....+ ...+..++++ ..++.++..
T Consensus       320 ~~t~~lI~~~~l~~MK~g-ailiNvgrg  346 (479)
T 1v8b_A          320 TGNVDVIKLEHLLKMKNN-AVVGNIGHF  346 (479)
T ss_dssp             CSSSSSBCHHHHTTCCTT-CEEEECSST
T ss_pred             CChhhhcCHHHHhhcCCC-cEEEEeCCC
Confidence            7655533 3667788998 888888753

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.26  E-value=0.0071  Score=54.63  Aligned_cols=90  Identities=19%  Similarity=0.268  Sum_probs=63.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCE-EEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATR-IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~-V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .|.+|.|+|.|.+|..+++.++.+|. + |++.+++..+.+.+.++|+..+        .++.+.+.     ..|+|+.+
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~-----~aDvV~l~  228 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGARRV--------ENIEELVA-----QADIVTVN  228 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTEEEC--------SSHHHHHH-----TCSEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCcEec--------CCHHHHHh-----cCCEEEEC
Confidence            57899999999999999999999999 7 9999988766666666775321        12322222     47888877


Q ss_pred             CCcH----HHH-HHHHHHhhcCCcEEEEecc
Q 020435          218 VGLA----SLV-QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       218 ~g~~----~~~-~~~~~~l~~~~G~~v~~g~  243 (326)
                      ....    ..+ ...+..++++ ..+|.++.
T Consensus       229 ~P~t~~t~~li~~~~l~~mk~g-a~lIn~ar  258 (364)
T 2j6i_A          229 APLHAGTKGLINKELLSKFKKG-AWLVNTAR  258 (364)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCChHHHHHhCHHHHhhCCCC-CEEEECCC
Confidence            6653    112 3456777886 77777764

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.26  E-value=0.01  Score=50.81  Aligned_cols=79  Identities=20%  Similarity=0.263  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      ++.+|||+|+ |.+|..+++.+...|+ +|+++++ ++++.+.+    +..+.. ..+  |..+  .+++.+.+.+... 
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK--PSEVVALFDKAVSH   96 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            4679999987 9999999999999999 8999988 66655432    333533 222  2222  1223333332221 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++|+++|.
T Consensus        97 ~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           97 FGGLDFVMSNSGM  109 (274)
T ss_dssp             HSCEEEEECCCCC
T ss_pred             cCCCCEEEECCCC
Confidence             279999998873

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.25  E-value=0.0061  Score=51.12  Aligned_cols=103  Identities=12%  Similarity=0.130  Sum_probs=68.1

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC--c--EEEcCCCCCCccHHHHHHHhc
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--T--EFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~--~--~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      .+...++++++||-.|+|. |..+..+++..|..+|++++.+++..+.+++.-.  +  ..+..+.   .+... ... .
T Consensus        67 l~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~-~~~-~  140 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQE-YAN-I  140 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGGG-GTT-T
T ss_pred             ccccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC---CCccc-ccc-c
Confidence            3445677899999999876 8888888888774499999999988877654211  1  2222222   11000 001 1


Q ss_pred             CCCccEEEEcCCcH----HHHHHHHHHhhcCCcEEEEe
Q 020435          208 DGGADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       208 ~~g~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .+.+|+|+.....+    ..+..+.+.|+++ |.++..
T Consensus       141 ~~~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  177 (230)
T 1fbn_A          141 VEKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA  177 (230)
T ss_dssp             SCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             CccEEEEEEecCChhHHHHHHHHHHHhCCCC-cEEEEE
Confidence            13799999655544    3477888899998 999886

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.24  E-value=0.018  Score=50.77  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=51.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC---hhHHHHH-Hh----cCCc-EEEcCCCCCCccHHHHHHHhcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG-KR----FGVT-EFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~---~~~~~~~-~~----~g~~-~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      .+.++||+|+|++|.+++..+...|+.+|+++.|+   .++.+.+ ++    ++.. .+++.++  .+++.+.+.     
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~--~~~l~~~l~-----  225 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED--HEQLRKEIA-----  225 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC--HHHHHHHHH-----
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch--HHHHHhhhc-----
Confidence            57899999999999999999999998789999998   6665543 22    2321 3344333  011222221     


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      .+|+||+|.+.
T Consensus       226 ~aDiIINaTp~  236 (315)
T 3tnl_A          226 ESVIFTNATGV  236 (315)
T ss_dssp             TCSEEEECSST
T ss_pred             CCCEEEECccC
Confidence            58999998874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.24  E-value=0.0095  Score=49.75  Aligned_cols=96  Identities=21%  Similarity=0.189  Sum_probs=67.0

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCC------CEEEEEcCChhHHHHHHhc----C-------CcEEEcCCCCCCcc
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGA------TRIIGVDVISEKFEIGKRF----G-------VTEFVNSKNCGDKS  198 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~------~~V~~~~~~~~~~~~~~~~----g-------~~~vi~~~~~~~~~  198 (326)
                      .++++++||.+|+|. |..+..+++..+.      .+|++++.+++..+.+++.    +       .-.++..+.     
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-----  154 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG-----  154 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG-----
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc-----
Confidence            578899999999876 8888888886652      3899999999887776541    1       112332221     


Q ss_pred             HHHHHHHhcC-CCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          199 VSQIIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       199 ~~~~i~~~~~-~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                       .+   .+.. +.+|+|+...........+.+.|+++ |+++..-
T Consensus       155 -~~---~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  194 (227)
T 1r18_A          155 -RK---GYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVPV  194 (227)
T ss_dssp             -GG---CCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             -cc---CCCcCCCccEEEECCchHHHHHHHHHHhcCC-CEEEEEE
Confidence             11   1122 37999997777666568899999998 9988753

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.23  E-value=0.012  Score=49.52  Aligned_cols=77  Identities=22%  Similarity=0.194  Sum_probs=49.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHHH----HhcCCc-EE-E--cCCCCCCccHHHHHHHhcC-
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVT-EF-V--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~~~~~~~----~~~g~~-~v-i--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      ++++||+|+ |.+|..+++.+...|+ +|+++ .+++++.+.+    +..+.. .. +  |..+  .+.+.+.+.+... 
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   77 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE--AEAATALVHQAAEV   77 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCC--HHHHHHHHHHHHHh
Confidence            358999987 9999999999988999 89888 7887765543    223422 22 2  2222  1222222332221 


Q ss_pred             -CCccEEEEcCC
Q 020435          209 -GGADYCFECVG  219 (326)
Q Consensus       209 -~g~d~v~d~~g  219 (326)
                       +++|++|+++|
T Consensus        78 ~~~~d~li~~Ag   89 (245)
T 2ph3_A           78 LGGLDTLVNNAG   89 (245)
T ss_dssp             HTCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence             37999999887

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.22  E-value=0.025  Score=51.82  Aligned_cols=96  Identities=14%  Similarity=0.115  Sum_probs=63.1

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCC--CEEEEEcCChhHHHHHH-hcC------CcE-EEcCCCCCCccHHHHHHHhcCC-
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGA--TRIIGVDVISEKFEIGK-RFG------VTE-FVNSKNCGDKSVSQIIIDMTDG-  209 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~--~~V~~~~~~~~~~~~~~-~~g------~~~-vi~~~~~~~~~~~~~i~~~~~~-  209 (326)
                      .+|+|+|+|.+|..+++.+...|.  ..|++.+++.++.+.+. +++      ... .+|..+      .+.+.++..+ 
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d------~~~l~~~l~~~   75 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS------IEELVALINEV   75 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC------HHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC------HHHHHHHHHhh
Confidence            379999999999999998887772  38999999998876543 332      221 122222      1233333333 


Q ss_pred             CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          210 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       210 g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ++|+|++|++..........++..+ -.++.++.
T Consensus        76 ~~DvVin~ag~~~~~~v~~a~l~~g-~~vvD~a~  108 (405)
T 4ina_A           76 KPQIVLNIALPYQDLTIMEACLRTG-VPYLDTAN  108 (405)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHHT-CCEEESSC
T ss_pred             CCCEEEECCCcccChHHHHHHHHhC-CCEEEecC
Confidence            6999999998654355566677776 77776543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.21  E-value=0.015  Score=52.20  Aligned_cols=89  Identities=19%  Similarity=0.166  Sum_probs=63.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.+++. +.+.+...|++.+        .++.+.+.+     .|+|+-+.
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~~--------~~l~ell~~-----aDiV~l~~  223 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAVA--------ESKDALFEQ-----SDVLSVHL  223 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEEC--------SSHHHHHHH-----CSEEEECC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceEe--------CCHHHHHhh-----CCEEEEec
Confidence            47899999999999999999999999 999999875 3455566676421        234333333     78888766


Q ss_pred             CcH-H----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 GLA-S----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~-~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ... .    .....+..++++ ..+|.++.
T Consensus       224 Plt~~t~~li~~~~l~~mk~g-ailIN~aR  252 (352)
T 3gg9_A          224 RLNDETRSIITVADLTRMKPT-ALFVNTSR  252 (352)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-CEEEECSC
T ss_pred             cCcHHHHHhhCHHHHhhCCCC-cEEEECCC
Confidence            532 1    123567778887 88888773

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.21  E-value=0.028  Score=50.09  Aligned_cols=87  Identities=25%  Similarity=0.386  Sum_probs=62.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+.+|.|+|.|.+|..+++.++..|. +|++.+++.++ +.+..+|+..         .++.+.+.     ..|+|+.++
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~---------~~l~~~l~-----~aDvVil~v  212 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAEF---------KPLEDLLR-----ESDFVVLAV  212 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCEE---------CCHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCccc---------CCHHHHHh-----hCCEEEECC
Confidence            46799999999999999999999998 99999998877 5555566521         12333332     378888877


Q ss_pred             CcHH----HH-HHHHHHhhcCCcEEEEec
Q 020435          219 GLAS----LV-QEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       219 g~~~----~~-~~~~~~l~~~~G~~v~~g  242 (326)
                      ....    .+ ...+..++++ ..++.++
T Consensus       213 p~~~~t~~~i~~~~~~~mk~~-ailIn~s  240 (334)
T 2dbq_A          213 PLTRETYHLINEERLKLMKKT-AILINIA  240 (334)
T ss_dssp             CCCTTTTTCBCHHHHHHSCTT-CEEEECS
T ss_pred             CCChHHHHhhCHHHHhcCCCC-cEEEECC
Confidence            6532    12 3556778886 7777665

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.21  E-value=0.019  Score=49.01  Aligned_cols=79  Identities=22%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHH----HHhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEI----GKRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~~~~~~----~~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++ .+++++.+.    +++.+.. ..+  |..+  .++..+.+.+... 
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN--AAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4789999987 8999999999999999 88888 555554433    2334432 222  2222  1223333333222 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        84 ~g~id~lv~nAg~   96 (259)
T 3edm_A           84 FGEIHGLVHVAGG   96 (259)
T ss_dssp             HCSEEEEEECCCC
T ss_pred             hCCCCEEEECCCc
Confidence             379999998863

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.20  E-value=0.012  Score=50.63  Aligned_cols=82  Identities=17%  Similarity=0.097  Sum_probs=50.7

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHHHH----hcCCc-EEEcCCCCCCccHHHHHHHhcC--
Q 020435          138 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIGK----RFGVT-EFVNSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~~~~~~~~----~~g~~-~vi~~~~~~~~~~~~~i~~~~~--  208 (326)
                      ..+.++||+|+ |++|.++++.+...|+ +|+.+ .+++++.+.+.    +.+.. .++..+-.+.+++.+.+.+...  
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            35679999987 9999999999999999 78776 67766655432    33432 2222111011223333333222  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|+++|.
T Consensus       103 g~id~li~nAg~  114 (272)
T 4e3z_A          103 GRLDGLVNNAGI  114 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            389999998873

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.20  E-value=0.015  Score=49.63  Aligned_cols=79  Identities=19%  Similarity=0.380  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCChh---HHHHHHh-cCCcEEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGKR-FGVTEFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~~---~~~~~~~-~g~~~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+   |.+|.++++.+...|+ +|++++++++   ..+.+.+ .+....+  |..+  .+++.+.+.+... 
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ--DEELDALFAGVKEA   83 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999985   6999999998888899 9999998875   2333322 3422333  2222  1223333332221 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        84 ~g~iD~lv~~Ag~   96 (261)
T 2wyu_A           84 FGGLDYLVHAIAF   96 (261)
T ss_dssp             HSSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999998873

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.19  E-value=0.016  Score=49.99  Aligned_cols=95  Identities=15%  Similarity=0.088  Sum_probs=62.1

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHhcCCcEEE-cCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          142 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~--g~~~V~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      +|||+|+ |.+|..+++.+...  |. +|+++++++++.+.+...++..+. |..+      .+.+.+... ++|+||++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~d------~~~l~~~~~-~~d~vi~~   73 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYNQ------PESLQKAFA-GVSKLLFI   73 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTTC------HHHHHHHTT-TCSEEEEC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccCC------HHHHHHHHh-cCCEEEEc
Confidence            6899997 99999999888777  87 899999988776655544553322 2222      233444433 69999998


Q ss_pred             CCc-------HHHHHHHHHHhhcC-CcEEEEeccC
Q 020435          218 VGL-------ASLVQEAYACCRKG-WGKTIVLGVD  244 (326)
Q Consensus       218 ~g~-------~~~~~~~~~~l~~~-~G~~v~~g~~  244 (326)
                      ++.       ......+++.+... -++++.++..
T Consensus        74 a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~  108 (287)
T 2jl1_A           74 SGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA  108 (287)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred             CCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            874       12233455555543 1378887753

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.18  E-value=0.022  Score=50.08  Aligned_cols=99  Identities=16%  Similarity=0.071  Sum_probs=65.0

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC----------CcEEEcCCCCCCccHHHHHHHh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----------VTEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g----------~~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ..++.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.-          .-.++.      .+..+.+.+.
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~~~~~  165 (304)
T 3bwc_A           93 HPKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV------GDGLAFVRQT  165 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHSS
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE------CcHHHHHHhc
Confidence            35678999998765 666677777654449999999998888776521          112222      2333333322


Q ss_pred             cCCCccEEEE-cCCc---------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          207 TDGGADYCFE-CVGL---------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       207 ~~~g~d~v~d-~~g~---------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..+.+|+|+. ....         ...++.+.+.|+++ |.++....
T Consensus       166 ~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~~  211 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD-GICCNQGE  211 (304)
T ss_dssp             CTTCEEEEEEECC---------CCHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence            2348999984 3211         35578899999998 99988753

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.18  E-value=0.0092  Score=52.35  Aligned_cols=94  Identities=13%  Similarity=0.006  Sum_probs=62.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc--EEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      .+.+++|+|+|++|.+++..+...|+.+|++..++.++.+.+ +.++..  .+++        + +.+.+.. +++|+|+
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~--------~-~~~~~~~-~~aDivI  209 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS--------L-AEAETRL-AEYDIII  209 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC--------H-HHHHHTG-GGCSEEE
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee--------H-HHHHhhh-ccCCEEE
Confidence            578999999999999999999999977899999998886654 455542  2221        1 1222222 2699999


Q ss_pred             EcCCcHHHH-----HHHHHHhhcCCcEEEEecc
Q 020435          216 ECVGLASLV-----QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       216 d~~g~~~~~-----~~~~~~l~~~~G~~v~~g~  243 (326)
                      +|.+....-     ......++++ ..++.+..
T Consensus       210 n~t~~~~~~~~~~~~i~~~~l~~~-~~v~D~~y  241 (297)
T 2egg_A          210 NTTSVGMHPRVEVQPLSLERLRPG-VIVSDIIY  241 (297)
T ss_dssp             ECSCTTCSSCCSCCSSCCTTCCTT-CEEEECCC
T ss_pred             ECCCCCCCCCCCCCCCCHHHcCCC-CEEEEcCC
Confidence            999865410     0012345665 66666654

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.17  E-value=0.012  Score=48.95  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=67.8

Q ss_pred             hcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHH
Q 020435          134 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       134 ~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~  205 (326)
                      .....++.+||-+|+|. |..+..+++.++ ..+|++++.+++..+.+++    .|..   .++.      .+..+.+..
T Consensus        59 l~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~------~d~~~~~~~  131 (225)
T 3tr6_A           59 LVKLMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL------SPAKDTLAE  131 (225)
T ss_dssp             HHHHHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE------SCHHHHHHH
T ss_pred             HHHhhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe------CCHHHHHHH
Confidence            34456788999999876 777888888763 3399999999988877654    3432   2222      233333333


Q ss_pred             hcC----CCccEEEEcCCc---HHHHHHHHHHhhcCCcEEEEecc
Q 020435          206 MTD----GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       206 ~~~----~g~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ...    +.+|+|+-....   ...+..+.+.|+++ |.++....
T Consensus       132 ~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~~  175 (225)
T 3tr6_A          132 LIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREG-GLIAVDNV  175 (225)
T ss_dssp             HHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEECS
T ss_pred             hhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence            322    479999843332   33477888999998 99886543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.17  E-value=0.013  Score=50.95  Aligned_cols=94  Identities=16%  Similarity=0.224  Sum_probs=64.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-----C---------Cc--EEEcCCCCCCccHHH
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----G---------VT--EFVNSKNCGDKSVSQ  201 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-----g---------~~--~vi~~~~~~~~~~~~  201 (326)
                      .++.+||++|+|. |..+..+++. +..+|++++.+++..+.+++.     +         ..  .++.      .+..+
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~------~D~~~  145 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI------GDGFE  145 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE------SCHHH
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE------CchHH
Confidence            4678999998765 6666677777 655999999999988887652     1         11  2222      23333


Q ss_pred             HHHHhcCCCccEEE-EcCC---------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          202 IIIDMTDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       202 ~i~~~~~~g~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+..  .+.+|+|+ |...         ....++.+.+.|+++ |.++...
T Consensus       146 ~l~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~  193 (281)
T 1mjf_A          146 FIKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA  193 (281)
T ss_dssp             HHHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             Hhcc--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            3433  44899998 5432         245588999999998 9998763

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.17  E-value=0.0075  Score=51.48  Aligned_cols=73  Identities=21%  Similarity=0.232  Sum_probs=48.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEE--cCCCCCCccHHHHHHHhc--CCCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV--NSKNCGDKSVSQIIIDMT--DGGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~--~~g~d~  213 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.     + ..+  |..+  .+++.+.+.+..  -+++|+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~-----~-~~~~~Dl~d--~~~v~~~~~~~~~~~g~iD~   90 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG-----F-LAVKCDITD--TEQVEQAYKEIEETHGPVEV   90 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT-----S-EEEECCTTS--HHHHHHHHHHHHHHTCSCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc-----c-eEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            3679999987 9999999999999999 99999987655332     1 222  2222  122333333322  137999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +++++|.
T Consensus        91 lv~nAg~   97 (253)
T 2nm0_A           91 LIANAGV   97 (253)
T ss_dssp             EEEECSC
T ss_pred             EEECCCC
Confidence            9998874

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.16  E-value=0.021  Score=50.60  Aligned_cols=89  Identities=17%  Similarity=0.159  Sum_probs=63.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .|.+|.|+|.|.+|..+++.++..|. +|++.++ +.++ +.+.++|+.. .       .++.+.+.     ..|+|+-+
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~-~-------~~l~ell~-----~aDvVil~  209 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATF-H-------DSLDSLLS-----VSQFFSLN  209 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEE-C-------SSHHHHHH-----HCSEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEE-c-------CCHHHHHh-----hCCEEEEe
Confidence            57899999999999999999999998 9999998 7766 3455667632 1       12333332     37899887


Q ss_pred             CCcHH----HH-HHHHHHhhcCCcEEEEecc
Q 020435          218 VGLAS----LV-QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       218 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~  243 (326)
                      .....    .+ ...+..++++ ..++.++.
T Consensus       210 ~p~~~~t~~~i~~~~l~~mk~g-ailIn~ar  239 (320)
T 1gdh_A          210 APSTPETRYFFNKATIKSLPQG-AIVVNTAR  239 (320)
T ss_dssp             CCCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             ccCchHHHhhcCHHHHhhCCCC-cEEEECCC
Confidence            76421    12 3456778887 77777764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.15  E-value=0.053  Score=47.60  Aligned_cols=89  Identities=16%  Similarity=0.057  Sum_probs=64.2

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|... .       .+..+.+.     ..|+||-|+.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~-------~~~~e~~~-----~aDvVi~~vp   74 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAHL-C-------ESVKAALS-----ASPATIFVLL   74 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCEE-C-------SSHHHHHH-----HSSEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee-c-------CCHHHHHh-----cCCEEEEEeC
Confidence            4689999999999999999888998 8999999999998887777531 1       23344343     3799999998


Q ss_pred             cHHHHHHHH-----HHhhcCCcEEEEecc
Q 020435          220 LASLVQEAY-----ACCRKGWGKTIVLGV  243 (326)
Q Consensus       220 ~~~~~~~~~-----~~l~~~~G~~v~~g~  243 (326)
                      .+......+     ..+.++ ..++.++.
T Consensus        75 ~~~~~~~v~~~~~l~~~~~g-~ivid~st  102 (306)
T 3l6d_A           75 DNHATHEVLGMPGVARALAH-RTIVDYTT  102 (306)
T ss_dssp             SHHHHHHHHTSTTHHHHTTT-CEEEECCC
T ss_pred             CHHHHHHHhcccchhhccCC-CEEEECCC
Confidence            765344333     335565 66666654

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.15  E-value=0.0034  Score=53.39  Aligned_cols=75  Identities=21%  Similarity=0.226  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC--CCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~--~g~d~v~  215 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+.  +  ...|..+  .+++.+.+.+...  +++|+++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~--~~~~~~~~~~~~~~~g~id~lv   86 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTD--SDAVDRAFTAVEEHQGPVEVLV   86 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTC--HHHHHHHHHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999987 9999999999999999 9999998876543322  1  2223332  1223333333221  3799999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      +++|.
T Consensus        87 ~~Ag~   91 (247)
T 1uzm_A           87 SNAGL   91 (247)
T ss_dssp             EECSC
T ss_pred             ECCCC
Confidence            98874

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.15  E-value=0.02  Score=49.89  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=31.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      ...+|+|+|+|++|..+++.+...|.+++..++.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            357999999999999999999999998999998655

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.14  E-value=0.02  Score=49.36  Aligned_cols=73  Identities=12%  Similarity=0.063  Sum_probs=52.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      ++.+++|+|+|++|.++++.+...|. +|+++.++.++.+.+ +.++.. .+ +..+  ...    +.+   +++|++++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~-~~~~--~~~----~~~---~~~DivVn  186 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSI-QALS--MDE----LEG---HEFDLIIN  186 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSE-EECC--SGG----GTT---CCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCe-eEec--HHH----hcc---CCCCEEEE
Confidence            57899999999999999999999997 999999998886544 444431 11 1111  011    111   47999999


Q ss_pred             cCCcHH
Q 020435          217 CVGLAS  222 (326)
Q Consensus       217 ~~g~~~  222 (326)
                      |++...
T Consensus       187 ~t~~~~  192 (271)
T 1nyt_A          187 ATSSGI  192 (271)
T ss_dssp             CCSCGG
T ss_pred             CCCCCC
Confidence            999765

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.13  E-value=0.022  Score=51.07  Aligned_cols=90  Identities=21%  Similarity=0.297  Sum_probs=62.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~-~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .|.+|.|+|.|.+|..+++.++ ..|. +|++.+++.++.+...++|+..+        .++.+.+.     ..|+|+.+
T Consensus       162 ~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~-----~aDvVil~  227 (348)
T 2w2k_A          162 RGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV--------DSLEELAR-----RSDCVSVS  227 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHHH-----HCSEEEEC
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe--------CCHHHHhc-----cCCEEEEe
Confidence            5789999999999999999999 9999 99999988776666666665321        12333232     37888877


Q ss_pred             CCcHH----HH-HHHHHHhhcCCcEEEEecc
Q 020435          218 VGLAS----LV-QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       218 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~  243 (326)
                      +....    .+ ...+..++++ ..++.++.
T Consensus       228 vp~~~~t~~li~~~~l~~mk~g-ailin~sr  257 (348)
T 2w2k_A          228 VPYMKLTHHLIDEAFFAAMKPG-SRIVNTAR  257 (348)
T ss_dssp             CCCSGGGTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred             CCCChHHHHHhhHHHHhcCCCC-CEEEECCC
Confidence            66421    11 3456677876 66666553

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.13  E-value=0.02  Score=51.11  Aligned_cols=88  Identities=31%  Similarity=0.478  Sum_probs=64.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.+++.++ +.+...|++.    .     ++.+.+ +    ..|+|+.+.
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~----~-----~l~ell-~----~aDvV~l~~  227 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQ----L-----PLEEIW-P----LCDFITVHT  227 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEE----C-----CHHHHG-G----GCSEEEECC
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCcee----C-----CHHHHH-h----cCCEEEEec
Confidence            57899999999999999999999999 99999987766 3556677642    1     222222 1    589999877


Q ss_pred             CcHH----HH-HHHHHHhhcCCcEEEEecc
Q 020435          219 GLAS----LV-QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~~----~~-~~~~~~l~~~~G~~v~~g~  243 (326)
                      ....    .+ ...+..++++ +.+|.++.
T Consensus       228 P~t~~t~~li~~~~l~~mk~g-ailIN~ar  256 (335)
T 2g76_A          228 PLLPSTTGLLNDNTFAQCKKG-VRVVNCAR  256 (335)
T ss_dssp             CCCTTTTTSBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCHHHHHhhCHHHHhhCCCC-cEEEECCC
Confidence            6532    12 3567788997 88888875

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.13  E-value=0.024  Score=49.24  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=53.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      +|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|... .       .+..+.+.     ..|+||-|+..+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~-------~~~~~~~~-----~advvi~~v~~~   68 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGARQ-A-------SSPAEVCA-----ACDITIAMLADP   68 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCEE-C-------SCHHHHHH-----HCSEEEECCSSH
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCee-c-------CCHHHHHH-----cCCEEEEEcCCH
Confidence            68899999999998888888898 8999999999988887766531 1       22333332     368888888876


Q ss_pred             HHHHHHH
Q 020435          222 SLVQEAY  228 (326)
Q Consensus       222 ~~~~~~~  228 (326)
                      ......+
T Consensus        69 ~~~~~v~   75 (287)
T 3pdu_A           69 AAAREVC   75 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4344443

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.13  E-value=0.012  Score=50.54  Aligned_cols=102  Identities=13%  Similarity=0.068  Sum_probs=65.4

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcE--EEcCCCCCCccHHHHHHHhcC
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      +.....+.++++||-+|+|. |..+..+++. |. +|++++.+++..+.+++.-...  -.+..+   .+.  .......
T Consensus        37 il~~l~l~~g~~VLDlGcGt-G~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~---~~~--~~~~~~~  108 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGAST-RFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLD---ITA--EIPKELA  108 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTC-HHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECC---TTS--CCCGGGT
T ss_pred             HHHhcCCCCcCEEEEEeCcc-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeee---ccc--ccccccC
Confidence            44566788999999999875 7777777765 77 9999999999999887632211  112111   010  0000112


Q ss_pred             CCccEEEEcCCc--------HHHHHHHHHHhhcCCcEEEEec
Q 020435          209 GGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       209 ~g~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +.+|+|+.+..-        ...+..+.+++ |+ |++++.-
T Consensus       109 ~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG-G~l~lS~  148 (261)
T 3iv6_A          109 GHFDFVLNDRLINRFTTEEARRACLGMLSLV-GS-GTVRASV  148 (261)
T ss_dssp             TCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT-SEEEEEE
T ss_pred             CCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC-cEEEEEe
Confidence            379999864321        22466777788 98 9987653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.12  E-value=0.014  Score=49.97  Aligned_cols=83  Identities=17%  Similarity=0.199  Sum_probs=52.0

Q ss_pred             cCCCCEEEEEc-c--CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHHhc--
Q 020435          137 VEVGSTVVIFG-L--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMT--  207 (326)
Q Consensus       137 ~~~~~~vlI~G-a--g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~--  207 (326)
                      ..++++|||+| +  +++|.++++.+...|+ +|++++++++..+.++    +.+...++.-+-.+.+++.+.+.+..  
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            34688999997 4  6999999999999999 9999988865444433    33432333222101122333333322  


Q ss_pred             CCCccEEEEcCCc
Q 020435          208 DGGADYCFECVGL  220 (326)
Q Consensus       208 ~~g~d~v~d~~g~  220 (326)
                      -+++|++|+++|.
T Consensus        90 ~g~id~lv~nAg~  102 (271)
T 3ek2_A           90 WDSLDGLVHSIGF  102 (271)
T ss_dssp             CSCEEEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            1389999998873

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.11  E-value=0.014  Score=46.86  Aligned_cols=100  Identities=17%  Similarity=0.193  Sum_probs=68.3

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC-c--EEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-T--EFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~~i  203 (326)
                      +.....+.++++||..|+|. |..+..+++.. . +|++++.+++..+.+++    .+. .  .++.      .++.+.+
T Consensus        25 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~------~d~~~~~   95 (192)
T 1l3i_A           25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME------GDAPEAL   95 (192)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE------SCHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcceEEEe------cCHHHhc
Confidence            44556778899999999876 77777777766 5 99999999988877754    333 1  2222      2333322


Q ss_pred             HHhcCCCccEEEEcCC---cHHHHHHHHHHhhcCCcEEEEec
Q 020435          204 IDMTDGGADYCFECVG---LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ...  +.+|+|+....   -...+..+.+.|+++ |.++...
T Consensus        96 ~~~--~~~D~v~~~~~~~~~~~~l~~~~~~l~~g-G~l~~~~  134 (192)
T 1l3i_A           96 CKI--PDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA  134 (192)
T ss_dssp             TTS--CCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             ccC--CCCCEEEECCchHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence            111  37999996543   244577888899998 9988764

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.10  E-value=0.016  Score=48.78  Aligned_cols=78  Identities=18%  Similarity=0.227  Sum_probs=49.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhc--C
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~  208 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|+++ .+++++.+.+    +..+.. ..+  |..+  .+++.+.+.+..  -
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK--EADVEAMMKTAIDAW   77 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS--HHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence            468999987 9999999999999999 88884 7887665543    223432 122  2222  122333333322  1


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++|++++.
T Consensus        78 g~id~li~~Ag~   89 (244)
T 1edo_A           78 GTIDVVVNNAGI   89 (244)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999998873

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.034  Score=51.95  Aligned_cols=93  Identities=9%  Similarity=0.075  Sum_probs=61.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHh-cCCcE-EEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-FGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~-~g~~~-vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      +.+|+|+|+|.+|.+++..+... +. +|++++++.++.+.+.+ .+... .++..+   .   +.+.+... ++|+|++
T Consensus        23 ~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~d---~---~~l~~~l~-~~DvVIn   94 (467)
T 2axq_A           23 GKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVTD---D---SALDKVLA-DNDVVIS   94 (467)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTTC---H---HHHHHHHH-TSSEEEE
T ss_pred             CCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecCC---H---HHHHHHHc-CCCEEEE
Confidence            56899999999999999888876 66 89999999888766543 34322 223222   1   12222221 6999999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      |++..........++..+ -.++..
T Consensus        95 ~tp~~~~~~v~~a~l~~g-~~vvd~  118 (467)
T 2axq_A           95 LIPYTFHPNVVKSAIRTK-TDVVTS  118 (467)
T ss_dssp             CSCGGGHHHHHHHHHHHT-CEEEEC
T ss_pred             CCchhhhHHHHHHHHhcC-CEEEEe
Confidence            999764233345567775 666654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.09  E-value=0.013  Score=48.68  Aligned_cols=98  Identities=20%  Similarity=0.211  Sum_probs=66.8

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cC-----C--cEEEcCCCCCCccHHHHH
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FG-----V--TEFVNSKNCGDKSVSQII  203 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g-----~--~~vi~~~~~~~~~~~~~i  203 (326)
                      .++++++||-+|+|. |..+..+++..|. .+|++++.+++..+.+++    .+     .  -.++..+.      .+. 
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~------~~~-  145 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG------RMG-  145 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG------GGC-
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc------ccC-
Confidence            377899999999876 7788888887753 289999999988877653    22     1  12222211      100 


Q ss_pred             HHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          204 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       ....+.+|+|+........+..+.+.|+++ |+++..-.
T Consensus       146 -~~~~~~fD~i~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~  183 (226)
T 1i1n_A          146 -YAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILPVG  183 (226)
T ss_dssp             -CGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred             -cccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEe
Confidence             011237999997666556578889999998 99887643

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.09  E-value=0.036  Score=48.78  Aligned_cols=88  Identities=16%  Similarity=0.263  Sum_probs=61.9

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|.. +.       .+..+.+.     .+|+||.|+..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~-----~~DvVi~av~~   96 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGAR-LG-------RTPAEVVS-----TCDITFACVSD   96 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCE-EC-------SCHHHHHH-----HCSEEEECCSS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCE-Ec-------CCHHHHHh-----cCCEEEEeCCC
Confidence            579999999999999988888898 899999999988877776653 21       12333332     37999999986


Q ss_pred             HHHHHHHHH-------HhhcCCcEEEEecc
Q 020435          221 ASLVQEAYA-------CCRKGWGKTIVLGV  243 (326)
Q Consensus       221 ~~~~~~~~~-------~l~~~~G~~v~~g~  243 (326)
                      +......+.       .+.++ ..++.++.
T Consensus        97 ~~~~~~v~~~~~~~~~~l~~~-~~vv~~s~  125 (316)
T 2uyy_A           97 PKAAKDLVLGPSGVLQGIRPG-KCYVDMST  125 (316)
T ss_dssp             HHHHHHHHHSTTCGGGGCCTT-CEEEECSC
T ss_pred             HHHHHHHHcCchhHhhcCCCC-CEEEECCC
Confidence            554555543       34555 55665543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.09  E-value=0.023  Score=48.03  Aligned_cols=100  Identities=22%  Similarity=0.273  Sum_probs=69.7

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i  203 (326)
                      +.....+.++++||-+|+|. |..+..+++..+. +|++++.+++..+.+++    .|..   .++..+-   .++    
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~---~~~----   98 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AGY----   98 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TTC----
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh---HhC----
Confidence            45566788999999999877 7788888888888 99999999988777654    3321   2222221   111    


Q ss_pred             HHhcCCCccEEEEcC------CcHHHHHHHHHHhhcCCcEEEEec
Q 020435          204 IDMTDGGADYCFECV------GLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                        ...+.+|+|+...      .-...+..+.++|+++ |+++...
T Consensus        99 --~~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~  140 (256)
T 1nkv_A           99 --VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  140 (256)
T ss_dssp             --CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             --CcCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC-eEEEEec
Confidence              0123799998522      2244578888999998 9998864

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.09  E-value=0.012  Score=50.89  Aligned_cols=101  Identities=13%  Similarity=0.074  Sum_probs=67.6

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHh----c-CCc--EEEcCCCCCCccHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----F-GVT--EFVNSKNCGDKSVSQ  201 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~--g~~~V~~~~~~~~~~~~~~~----~-g~~--~vi~~~~~~~~~~~~  201 (326)
                      +.....++++++||-.|+|. |..+..+++..  +. +|++++.+++..+.+++    . |.+  .++..+-      .+
T Consensus       102 ~~~~~~~~~~~~VLD~G~G~-G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~------~~  173 (275)
T 1yb2_A          102 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI------AD  173 (275)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT------TT
T ss_pred             HHHHcCCCCcCEEEEecCCC-CHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch------hc
Confidence            44556788999999999874 77777888873  45 99999999998887654    2 432  2232221      11


Q ss_pred             HHHHhcCCCccEEEEcCCcH-HHHHHHHHHhhcCCcEEEEecc
Q 020435          202 IIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       202 ~i~~~~~~g~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                         ....+.+|+|+.....+ ..+..+.+.|+++ |.++....
T Consensus       174 ---~~~~~~fD~Vi~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~  212 (275)
T 1yb2_A          174 ---FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP  212 (275)
T ss_dssp             ---CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred             ---cCcCCCccEEEEcCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence               11123799999655443 4588899999998 99988753

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.07  E-value=0.034  Score=46.42  Aligned_cols=106  Identities=15%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh-HHHHHHhcC-CcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~-~~~~~~~~g-~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      .+.+|||+|+|.+|...++.+...|+ +|++++.... ..+.+.+.+ .. .+. ..+...++         .++|+||-
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~-~i~-~~~~~~dL---------~~adLVIa   97 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLR-VKR-KKVGEEDL---------LNVFFIVV   97 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCE-EEC-SCCCGGGS---------SSCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcE-EEE-CCCCHhHh---------CCCCEEEE
Confidence            47899999999999999999999999 8888876443 233332323 43 332 11111111         27999999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhc
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS  260 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  260 (326)
                      +.+.+. ....+...... |..|.....  ....+|-+..++.+
T Consensus        98 AT~d~~-~N~~I~~~ak~-gi~VNvvD~--p~~~~f~~Paiv~r  137 (223)
T 3dfz_A           98 ATNDQA-VNKFVKQHIKN-DQLVNMASS--FSDGNIQIPAQFSR  137 (223)
T ss_dssp             CCCCTH-HHHHHHHHSCT-TCEEEC-------CCSEECCEEEEE
T ss_pred             CCCCHH-HHHHHHHHHhC-CCEEEEeCC--cccCeEEEeeEEEe
Confidence            999988 55444444556 888776543  33445544444443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.07  E-value=0.057  Score=44.72  Aligned_cols=75  Identities=13%  Similarity=0.080  Sum_probs=55.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      +|+|.|+|.+|..+++.+...|. .|+++++++++.+.+. ..+.. ++..+.   .+ .+.+.+..-.++|+++-+.+.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~-~i~gd~---~~-~~~l~~a~i~~ad~vi~~~~~   75 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKAT-IIHGDG---SH-KEILRDAEVSKNDVVVILTPR   75 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSE-EEESCT---TS-HHHHHHHTCCTTCEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCe-EEEcCC---CC-HHHHHhcCcccCCEEEEecCC
Confidence            68999999999999999999998 8999999999888764 45654 443333   11 233444322389999999998


Q ss_pred             HH
Q 020435          221 AS  222 (326)
Q Consensus       221 ~~  222 (326)
                      ..
T Consensus        76 d~   77 (218)
T 3l4b_C           76 DE   77 (218)
T ss_dssp             HH
T ss_pred             cH
Confidence            76

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.05  E-value=0.016  Score=48.90  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCC-ccHHH---HHHHhcC-CCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD-KSVSQ---IIIDMTD-GGAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~-~~~~~---~i~~~~~-~g~d  212 (326)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+     +....+.. +..+ +++.+   .+.+..+ +++|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~-D~~~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKM-TDSFTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCC-CSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc-----CCcEEEEc-CCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            5779999987 9999999999998999 9999998876532     11112211 1011 11222   2222233 4899


Q ss_pred             EEEEcCC
Q 020435          213 YCFECVG  219 (326)
Q Consensus       213 ~v~d~~g  219 (326)
                      ++++++|
T Consensus        79 ~lv~~Ag   85 (241)
T 1dhr_A           79 AILCVAG   85 (241)
T ss_dssp             EEEECCC
T ss_pred             EEEEccc
Confidence            9999987

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.05  E-value=0.017  Score=50.01  Aligned_cols=78  Identities=18%  Similarity=0.230  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCChh---HHHHHHh-cCCcEEE--cCCCCCCccHHHHHHHhc--
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGKR-FGVTEFV--NSKNCGDKSVSQIIIDMT--  207 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~~---~~~~~~~-~g~~~vi--~~~~~~~~~~~~~i~~~~--  207 (326)
                      .+.++||+|+   |++|.++++.+...|+ +|++++++++   ..+.+.+ .+....+  |..+  .+++.+.+.+..  
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   96 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSL--DEDIKNLKKFLEEN   96 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4679999985   6999999999988999 9999998875   2333322 3322233  2222  122222233222  


Q ss_pred             CCCccEEEEcCC
Q 020435          208 DGGADYCFECVG  219 (326)
Q Consensus       208 ~~g~d~v~d~~g  219 (326)
                      -+++|++++++|
T Consensus        97 ~g~iD~lv~~Ag  108 (285)
T 2p91_A           97 WGSLDIIVHSIA  108 (285)
T ss_dssp             TSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            138999999887

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.04  E-value=0.04  Score=45.15  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=62.7

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CC-----------------cEEEcCCCC
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV-----------------TEFVNSKNC  194 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~-----------------~~vi~~~~~  194 (326)
                      ....+.++.+||..|+|. |..+..+++. |. +|++++.|++..+.+++. +.                 -.++..+- 
T Consensus        16 ~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~-   91 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-   91 (203)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-
T ss_pred             HhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc-
Confidence            445567889999999876 6667777776 88 999999999998887652 11                 11222111 


Q ss_pred             CCccHHHHHHHhcCCCccEEEEcCCc--------HHHHHHHHHHhhcCCcEEEEe
Q 020435          195 GDKSVSQIIIDMTDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       195 ~~~~~~~~i~~~~~~g~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ....+.+      .+.||+|++...-        ...++.+.+.|+++ |+++++
T Consensus        92 ~~l~~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg-G~~~l~  139 (203)
T 1pjz_A           92 FALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLI  139 (203)
T ss_dssp             SSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEE
T ss_pred             ccCCccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC-cEEEEE
Confidence            0111110      0269999973221        12467889999998 994444

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.04  E-value=0.018  Score=49.62  Aligned_cols=78  Identities=14%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCChh---HHHHHHh-cCCcEEE--cCCCCCCccHHHHHHHhc--
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGKR-FGVTEFV--NSKNCGDKSVSQIIIDMT--  207 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~~---~~~~~~~-~g~~~vi--~~~~~~~~~~~~~i~~~~--  207 (326)
                      .+.++||+|+   |++|.++++.+...|+ +|++++++++   ..+.+.+ .+...++  |..+  .+++.+.+.+..  
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK--EEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4679999974   6999999999988999 9999998875   3333332 3422233  2222  122322333222  


Q ss_pred             CCCccEEEEcCC
Q 020435          208 DGGADYCFECVG  219 (326)
Q Consensus       208 ~~g~d~v~d~~g  219 (326)
                      -+++|++++++|
T Consensus        82 ~g~id~lv~nAg   93 (275)
T 2pd4_A           82 LGSLDFIVHSVA   93 (275)
T ss_dssp             TSCEEEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            138999999887

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.04  E-value=0.012  Score=49.38  Aligned_cols=73  Identities=16%  Similarity=0.246  Sum_probs=47.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCC-ccH---HHHHHHhcC-CCccE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD-KSV---SQIIIDMTD-GGADY  213 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~-~~~---~~~i~~~~~-~g~d~  213 (326)
                      +.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.     ....+..+- .+ +++   .+.+.+..+ +++|+
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~~~D~-~~~~~~~~~~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQAD-----SNILVDGNK-NWTEQEQSILEQTASSLQGSQVDG   75 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTSS-----EEEECCTTS-CHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCcccccc-----ccEEEeCCC-CCHHHHHHHHHHHHHHhCCCCCCE
Confidence            568999987 9999999999999999 99999988765321     111221111 11 112   222222232 48999


Q ss_pred             EEEcCC
Q 020435          214 CFECVG  219 (326)
Q Consensus       214 v~d~~g  219 (326)
                      +++++|
T Consensus        76 lv~~Ag   81 (236)
T 1ooe_A           76 VFCVAG   81 (236)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999988

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.03  E-value=0.012  Score=49.12  Aligned_cols=101  Identities=14%  Similarity=0.208  Sum_probs=69.6

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc----CCcEEEcCCCCCCccHHHHHHHh
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      +.+...+.++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++.    +.-.++..+.      .+.+  .
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~------~~~~--~  130 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG------TLGY--E  130 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG------GGCC--G
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc------cccc--c
Confidence            45566788899999999876 77777787764 5 999999999988887653    2112332221      1100  0


Q ss_pred             cCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          207 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       207 ~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..+.+|+|+....-......+.+.|+++ |.++..-.
T Consensus       131 ~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~l~~~~~  166 (231)
T 1vbf_A          131 EEKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILPIG  166 (231)
T ss_dssp             GGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEEC
T ss_pred             cCCCccEEEECCcHHHHHHHHHHHcCCC-cEEEEEEc
Confidence            1237999997665555456788999998 99887744

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.03  E-value=0.043  Score=47.59  Aligned_cols=97  Identities=13%  Similarity=0.116  Sum_probs=67.2

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC---cEEEcCCCCCCccHHHHHHHhcC
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV---TEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~---~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+.++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++    .|.   -.++..+-   .++     ...+
T Consensus        79 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~-----~~~~  148 (297)
T 2o57_A           79 VLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI-----PCED  148 (297)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC-----SSCT
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc---ccC-----CCCC
Confidence            778899999999874 7777888887788 99999999988777654    232   12332221   111     0112


Q ss_pred             CCccEEEEcCCc------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          209 GGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       209 ~g~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.+|+|+....-      ...+..+.++|+++ |.++....
T Consensus       149 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  188 (297)
T 2o57_A          149 NSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  188 (297)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCEeEEEecchhhhcCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence            379999864332      34588899999998 99988764

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.02  E-value=0.028  Score=52.16  Aligned_cols=103  Identities=16%  Similarity=0.211  Sum_probs=71.2

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHH-cCC--CEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhcCCCc
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARL-CGA--TRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~-~g~--~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      ++.-..+|||+|+|++|..++.++.. .+.  ..|++++..+...+..+..|.... ...+.   ++..+.+.++..++ 
T Consensus         9 ~~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vda---dnv~~~l~aLl~~~-   84 (480)
T 2ph5_A            9 KILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITP---QNYLEVIGSTLEEN-   84 (480)
T ss_dssp             CBCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCT---TTHHHHTGGGCCTT-
T ss_pred             eecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccc---hhHHHHHHHHhcCC-
Confidence            34556789999999999999988764 444  268888876665555555665322 22333   56666666666545 


Q ss_pred             cEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          212 DYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       212 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      |+|+++...-..+..+-.|+..+ -.++.+..
T Consensus        85 DvVIN~s~~~~~l~Im~acleaG-v~YlDTa~  115 (480)
T 2ph5_A           85 DFLIDVSIGISSLALIILCNQKG-ALYINAAT  115 (480)
T ss_dssp             CEEEECCSSSCHHHHHHHHHHHT-CEEEESSC
T ss_pred             CEEEECCccccCHHHHHHHHHcC-CCEEECCC
Confidence            99999776555467777788887 88888875

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.018  Score=49.02  Aligned_cols=78  Identities=18%  Similarity=0.300  Sum_probs=50.0

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHh-cCCc-EEE--cCCCCCCccHHHHHHHhcC--CC
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR-FGVT-EFV--NSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~--g~~~V~~~~~~~~~~~~~~~-~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      ++++||+|+ +++|.++++.+...  |. +|+.+++++++.+.+.+ ++.. ..+  |..+  .+++.+.+.+...  ++
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~   78 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGDRFFYVVGDITE--DSVLKQLVNAAVKGHGK   78 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGGGEEEEESCTTS--HHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHhcCC
Confidence            568999987 89999988776655  46 89999999888776543 4432 222  2222  1223233333221  38


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus        79 id~lvnnAg~   88 (254)
T 3kzv_A           79 IDSLVANAGV   88 (254)
T ss_dssp             CCEEEEECCC
T ss_pred             ccEEEECCcc
Confidence            9999998874

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.02  E-value=0.018  Score=50.89  Aligned_cols=77  Identities=17%  Similarity=0.097  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-----CC-cEEE-cCCCCCCccHHHHHHHhcCC
Q 020435          138 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----GV-TEFV-NSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-----g~-~~vi-~~~~~~~~~~~~~i~~~~~~  209 (326)
                      .++.+|||+|+ |.+|..+++.+...|. +|++++++.++.+.+.+.     +. -.++ ..+- .+.+   .+.+... 
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~d~~---~~~~~~~-   82 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDM-LKQG---AYDEVIK-   82 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCT-TSTT---TTTTTTT-
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCC-cChH---HHHHHHc-
Confidence            35789999997 9999999998888898 999999988776544321     21 1222 1111 1111   1222222 


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|+||++++.
T Consensus        83 ~~d~vih~A~~   93 (342)
T 1y1p_A           83 GAAGVAHIASV   93 (342)
T ss_dssp             TCSEEEECCCC
T ss_pred             CCCEEEEeCCC
Confidence            79999998874

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.01  E-value=0.019  Score=48.27  Aligned_cols=80  Identities=16%  Similarity=0.171  Sum_probs=50.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCC------EEEEEcCChhHHHHHHh----cCCc-EEEcCCCCCCc-cHHHHHHHh
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGAT------RIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDK-SVSQIIIDM  206 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~------~V~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~-~~~~~i~~~  206 (326)
                      +.+|||+|+ |.+|..+++.+...|+.      +|+++++++++.+.+.+    .+.. ..+..+- .+. .+.+.+.+.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADI-SDMADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCT-TSHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecC-CCHHHHHHHHHHH
Confidence            468999987 99999999888888874      79999998877655432    2432 2222111 112 233333322


Q ss_pred             c--CCCccEEEEcCCc
Q 020435          207 T--DGGADYCFECVGL  220 (326)
Q Consensus       207 ~--~~g~d~v~d~~g~  220 (326)
                      .  -+++|++|+++|.
T Consensus        81 ~~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHHTSCCSEEEECCCC
T ss_pred             HHhCCCCCEEEEcCCc
Confidence            2  1379999998873

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.01  E-value=0.12  Score=40.04  Aligned_cols=95  Identities=5%  Similarity=0.007  Sum_probs=59.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC-hhHHHHHH---hcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI-SEKFEIGK---RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~-~~~~~~~~---~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      .++|+|.|+|.+|..+++.+...|. +|++++++ +++.+.+.   ..|.. ++..+.   .+ .+.+.+..-.++|.|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~-~i~gd~---~~-~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNAD-VIPGDS---ND-SSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCE-EEESCT---TS-HHHHHHHTTTTCSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCe-EEEcCC---CC-HHHHHHcChhhCCEEE
Confidence            4689999999999999999999998 89999987 45554443   23443 443332   11 2334443223899999


Q ss_pred             EcCCcHHHHH---HHHHHhhcCCcEEEEe
Q 020435          216 ECVGLASLVQ---EAYACCRKGWGKTIVL  241 (326)
Q Consensus       216 d~~g~~~~~~---~~~~~l~~~~G~~v~~  241 (326)
                      -+.+....-.   ...+.+.+. .+++..
T Consensus        77 ~~~~~d~~n~~~~~~a~~~~~~-~~ii~~  104 (153)
T 1id1_A           77 ALSDNDADNAFVVLSAKDMSSD-VKTVLA  104 (153)
T ss_dssp             ECSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred             EecCChHHHHHHHHHHHHHCCC-CEEEEE
Confidence            9998765222   223344444 455543

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.01  E-value=0.02  Score=48.37  Aligned_cols=81  Identities=20%  Similarity=0.224  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHH----HHhcCCcE-EEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~-~~~~~~~----~~~~g~~~-vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++ +.++.+.    ++..+.+. .+..+-.+.+++.+.+.+...  +
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3678999987 9999999999999999 8888776 4444443    23344332 222111011223333333222  2


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus        82 ~id~lv~nAg~   92 (246)
T 3osu_A           82 SLDVLVNNAGI   92 (246)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999998884

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.01  E-value=0.0063  Score=52.18  Aligned_cols=75  Identities=17%  Similarity=0.210  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEE--cCCCCCCccHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV--NSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++++.++.+..   .+ ..+  |..+  .+++.+.+.+...  +++|+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~---~~-~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD~   99 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSADP---DI-HTVAGDISK--PETADRIVREGIERFGRIDS   99 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSST---TE-EEEESCTTS--HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccC---ce-EEEEccCCC--HHHHHHHHHHHHHHCCCCCE
Confidence            4789999987 9999999999999999 999999876543221   11 222  2222  1223333333222  28999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +++++|.
T Consensus       100 lv~nAg~  106 (260)
T 3un1_A          100 LVNNAGV  106 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.00  E-value=0.014  Score=52.68  Aligned_cols=48  Identities=23%  Similarity=0.285  Sum_probs=40.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHhcCCc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVT  186 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-~~~~g~~  186 (326)
                      -.|.+|+|.|.|.+|..+++.+...|+ +|++.+++.++.+. .++++++
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            368999999999999999999999999 89999998887764 4445653

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=96.00  E-value=0.028  Score=51.54  Aligned_cols=85  Identities=21%  Similarity=0.239  Sum_probs=53.8

Q ss_pred             ccc-CCCCEEEEEcc-CHHHHHHHHHHHH-cCCCEEEEEcCChhHH----------------HHHHhcCCc-EEEcCCCC
Q 020435          135 ANV-EVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKF----------------EIGKRFGVT-EFVNSKNC  194 (326)
Q Consensus       135 ~~~-~~~~~vlI~Ga-g~~G~~a~~la~~-~g~~~V~~~~~~~~~~----------------~~~~~~g~~-~vi~~~~~  194 (326)
                      ..+ +.++++||+|+ +++|+++++.+.. .|+ +|++++++.+..                +.+++.|.. ..+.-+-.
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvt  133 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAF  133 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCC
Confidence            445 35778899987 8999999888887 999 999988765421                344556643 22322221


Q ss_pred             CCcc---HHHHHHHhcCCCccEEEEcCCc
Q 020435          195 GDKS---VSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       195 ~~~~---~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      +.+.   +.+.+.+..+|++|++++++|.
T Consensus       134 d~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          134 SDAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             SHHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            1122   2333444443589999998875

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.00  E-value=0.011  Score=51.01  Aligned_cols=78  Identities=29%  Similarity=0.312  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    +..+.. ..+  |..+  .+++.+.+.+...  
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISD--PKSVEETISQQEKDF  109 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC--HHHHHHHHHHHHHHh
Confidence            4679999987 9999999998888899 999999887654433    223432 222  2222  1223333333221  


Q ss_pred             CCccEEEEcCC
Q 020435          209 GGADYCFECVG  219 (326)
Q Consensus       209 ~g~d~v~d~~g  219 (326)
                      +++|++|+++|
T Consensus       110 g~id~li~~Ag  120 (279)
T 3ctm_A          110 GTIDVFVANAG  120 (279)
T ss_dssp             SCCSEEEECGG
T ss_pred             CCCCEEEECCc
Confidence            27999999876

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.98  E-value=0.045  Score=47.17  Aligned_cols=84  Identities=20%  Similarity=0.218  Sum_probs=59.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      +|.|+|+|.+|.+.++.+...|. +|++.++++++.+.+.+.|.. .+.+       +..    +.  .++|+||-|+..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~-------~~~----~~--~~~D~vi~av~~   67 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQ-------DLS----LL--QTAKIIFLCTPI   67 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEES-------CGG----GG--TTCSEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccccC-------CHH----Hh--CCCCEEEEECCH
Confidence            68999999999999998888898 899999999988888777753 2221       111    11  268999999987


Q ss_pred             HHHHHHHHHH----hhcCCcEEEEe
Q 020435          221 ASLVQEAYAC----CRKGWGKTIVL  241 (326)
Q Consensus       221 ~~~~~~~~~~----l~~~~G~~v~~  241 (326)
                      .. ....+..    ++++ ..++.+
T Consensus        68 ~~-~~~~~~~l~~~~~~~-~~vv~~   90 (279)
T 2f1k_A           68 QL-ILPTLEKLIPHLSPT-AIVTDV   90 (279)
T ss_dssp             HH-HHHHHHHHGGGSCTT-CEEEEC
T ss_pred             HH-HHHHHHHHHhhCCCC-CEEEEC
Confidence            65 4444433    3444 455544

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.98  E-value=0.015  Score=53.01  Aligned_cols=90  Identities=16%  Similarity=0.104  Sum_probs=62.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.||..+++.++.+|. +|++.+++.++.+..+.+|+...        .++.+.+ +    ..|+|+.+.
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~~~--------~~l~ell-~----~aDvV~l~~  255 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH--------ATREDMY-P----VCDVVTLNC  255 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHG-G----GCSEEEECS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCceec--------CCHHHHH-h----cCCEEEEec
Confidence            57899999999999999999999999 99999988766666666675321        1222212 1    478888766


Q ss_pred             CcH----HHH-HHHHHHhhcCCcEEEEecc
Q 020435          219 GLA----SLV-QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~----~~~-~~~~~~l~~~~G~~v~~g~  243 (326)
                      ...    ..+ ...+..++++ ..+|.++.
T Consensus       256 Plt~~t~~li~~~~l~~mk~g-ailIN~aR  284 (393)
T 2nac_A          256 PLHPETEHMINDETLKLFKRG-AYIVNTAR  284 (393)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             CCchHHHHHhhHHHHhhCCCC-CEEEECCC
Confidence            632    112 3556677786 77777764

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.97  E-value=0.0059  Score=51.68  Aligned_cols=74  Identities=12%  Similarity=0.153  Sum_probs=47.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHH-----HHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQI-----IIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~-----i~~~~~--~g  210 (326)
                      .+.++||+|+ |++|.++++.+.. |. +|+++++++++.+.+.+......+..      ++.+.     +.+...  ++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~------D~~~~~~~~~~~~~~~~~~~   75 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIES------DIVKEVLEEGGVDKLKNLDH   75 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEEC------CHHHHHHTSSSCGGGTTCSC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCcceec------ccchHHHHHHHHHHHHhcCC
Confidence            3678999987 8999988887755 87 89999999988887766432223321      12211     111112  27


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus        76 id~lv~~Ag~   85 (245)
T 3e9n_A           76 VDTLVHAAAV   85 (245)
T ss_dssp             CSEEEECC--
T ss_pred             CCEEEECCCc
Confidence            9999999885

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=95.96  E-value=0.022  Score=50.23  Aligned_cols=94  Identities=12%  Similarity=0.108  Sum_probs=65.0

Q ss_pred             CEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHh-cCC-----cEEEcCCCCCCccHHHHHHHhcCCCccE
Q 020435          141 STVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-FGV-----TEFVNSKNCGDKSVSQIIIDMTDGGADY  213 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~-~g~-----~~vi~~~~~~~~~~~~~i~~~~~~g~d~  213 (326)
                      .+||++|+|. |.++..+++.. +. +|++++.+++-.+.+++ ++.     -.++.      .+..+.+.+...+.+|+
T Consensus        91 ~rVLdIG~G~-G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~------~Da~~~l~~~~~~~fDv  162 (317)
T 3gjy_A           91 LRITHLGGGA-CTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRAPRVKIRV------DDARMVAESFTPASRDV  162 (317)
T ss_dssp             CEEEEESCGG-GHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCTTTEEEEE------SCHHHHHHTCCTTCEEE
T ss_pred             CEEEEEECCc-CHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCCCceEEEE------CcHHHHHhhccCCCCCE
Confidence            3999998765 67777888854 66 99999999999888876 331     12222      23344444433448999


Q ss_pred             EE-EcCC---------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          214 CF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       214 v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      || |...         ....++.+.+.|+++ |.++....
T Consensus       163 Ii~D~~~~~~~~~~L~t~efl~~~~r~Lkpg-Gvlv~~~~  201 (317)
T 3gjy_A          163 IIRDVFAGAITPQNFTTVEFFEHCHRGLAPG-GLYVANCG  201 (317)
T ss_dssp             EEECCSTTSCCCGGGSBHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEEec
Confidence            98 4322         145688999999998 99887654

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.96  E-value=0.029  Score=47.74  Aligned_cols=78  Identities=12%  Similarity=0.144  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHH---cCCCEEEEEcCChhHHHHHH-hc-----CCc-EEE--cCCCCCCccHHHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARL---CGATRIIGVDVISEKFEIGK-RF-----GVT-EFV--NSKNCGDKSVSQIIID  205 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~---~g~~~V~~~~~~~~~~~~~~-~~-----g~~-~vi--~~~~~~~~~~~~~i~~  205 (326)
                      .+.++||+|+ |++|.++++.+..   .|+ +|+++++++++.+.+. ++     +.. ..+  |..+  .+++.+.+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~   81 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT--EAGVQRLLSA   81 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS--HHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCC--HHHHHHHHHH
Confidence            3678999987 8999999988877   899 9999999987765442 22     322 222  2222  1233333333


Q ss_pred             hcC----CCcc--EEEEcCC
Q 020435          206 MTD----GGAD--YCFECVG  219 (326)
Q Consensus       206 ~~~----~g~d--~v~d~~g  219 (326)
                      ...    +++|  ++++++|
T Consensus        82 ~~~~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           82 VRELPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCC
T ss_pred             HHhccccccCCccEEEECCc
Confidence            322    3677  9998876

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=95.96  E-value=0.012  Score=52.54  Aligned_cols=98  Identities=18%  Similarity=0.237  Sum_probs=65.6

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc------CC----cEEEcCCCCCCccHHHHHHHh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF------GV----TEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~------g~----~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ...+.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.      +.    -.++.      .+..+.+...
T Consensus       118 ~~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~------~D~~~~l~~~  190 (334)
T 1xj5_A          118 IPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI------GDGVAFLKNA  190 (334)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE------SCHHHHHHTS
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE------CCHHHHHHhc
Confidence            35678999998764 66667777765444999999999988877652      11    12222      2344444333


Q ss_pred             cCCCccEEEE-cCC---------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          207 TDGGADYCFE-CVG---------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       207 ~~~g~d~v~d-~~g---------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ..+.+|+|+. ...         ....+..+.+.|+++ |.++...
T Consensus       191 ~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  235 (334)
T 1xj5_A          191 AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQA  235 (334)
T ss_dssp             CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC-cEEEEec
Confidence            3348999984 331         245688999999998 9998863

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=95.96  E-value=0.036  Score=48.22  Aligned_cols=44  Identities=23%  Similarity=0.300  Sum_probs=36.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  182 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~  182 (326)
                      .++.+||-+|+|. |..+..+++..+..+|++++.++...+.+++
T Consensus        45 ~~~~~VLDiGCG~-G~~~~~la~~~~~~~v~gvDis~~~i~~A~~   88 (292)
T 3g07_A           45 FRGRDVLDLGCNV-GHLTLSIACKWGPSRMVGLDIDSRLIHSARQ   88 (292)
T ss_dssp             TTTSEEEEESCTT-CHHHHHHHHHTCCSEEEEEESCHHHHHHHHH
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            3678999999875 7888888888754499999999988887765

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.96  E-value=0.022  Score=48.43  Aligned_cols=79  Identities=22%  Similarity=0.312  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH-HHHh----cCCc-EEE--cCCCCCCccHHHHHHHhc--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMT--  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~-~~~~----~g~~-~vi--~~~~~~~~~~~~~i~~~~--  207 (326)
                      .+.++||+|+ |.+|..+++.+...|+ +|++++++.++.+ .+++    .+.. ..+  |..+  .+++.+.+.+..  
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN--TDIVTKTIQQIDAD   89 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCC--HHHHHHHHHHHHHh
Confidence            3678999987 9999999999988998 9999998654432 2222    2432 222  2222  122333333322  


Q ss_pred             CCCccEEEEcCCc
Q 020435          208 DGGADYCFECVGL  220 (326)
Q Consensus       208 ~~g~d~v~d~~g~  220 (326)
                      -+++|++++++|.
T Consensus        90 ~~~id~li~~Ag~  102 (265)
T 1h5q_A           90 LGPISGLIANAGV  102 (265)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1379999998874

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.95  E-value=0.078  Score=47.83  Aligned_cols=112  Identities=15%  Similarity=0.169  Sum_probs=72.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC----hhH---------HHHHHhcCCcEEEcCCCCCCccHHHHHHH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI----SEK---------FEIGKRFGVTEFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~----~~~---------~~~~~~~g~~~vi~~~~~~~~~~~~~i~~  205 (326)
                      ++.+|+|.|+|..|..+++++..+|+++|++++++    .++         .+++++...    ....   .++.+.++ 
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~----~~~~---~~L~eav~-  262 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP----ERLS---GDLETALE-  262 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TCCC---SCHHHHHT-
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc----cCch---hhHHHHHc-
Confidence            56799999999999999999999999889999987    544         233333321    0112   45555553 


Q ss_pred             hcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEee
Q 020435          206 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  267 (326)
Q Consensus       206 ~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~  267 (326)
                          ++|++|-+.+...+-+..++.++++ ..++.++...    ....+...+.....++.+
T Consensus       263 ----~ADVlIG~Sap~l~t~emVk~Ma~~-pIIfalSNPt----~E~~p~~a~~~g~~i~at  315 (388)
T 1vl6_A          263 ----GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPV----PEIDPELAREAGAFIVAT  315 (388)
T ss_dssp             ----TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSS----CSSCHHHHHHTTCSEEEE
T ss_pred             ----cCCEEEEeCCCCccCHHHHHhcCCC-CEEEEcCCCC----CCCCHHHHHHhcCeEEEe
Confidence                4799998877433345777788887 7665555432    345555444433344443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.94  E-value=0.068  Score=46.50  Aligned_cols=87  Identities=16%  Similarity=0.301  Sum_probs=60.5

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|.. +.       .+..+.+.     .+|+||-|+..
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~-----~~D~vi~~vp~   70 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGAQ-AC-------ENNQKVAA-----ASDIIFTSLPN   70 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTCE-EC-------SSHHHHHH-----HCSEEEECCSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe-ec-------CCHHHHHh-----CCCEEEEECCC
Confidence            589999999999999888888898 899999999888877766642 11       12333332     37999999976


Q ss_pred             HHHHHHHH-------HHhhcCCcEEEEec
Q 020435          221 ASLVQEAY-------ACCRKGWGKTIVLG  242 (326)
Q Consensus       221 ~~~~~~~~-------~~l~~~~G~~v~~g  242 (326)
                      +......+       ..++++ ..++.++
T Consensus        71 ~~~~~~v~~~~~~l~~~l~~~-~~vv~~~   98 (301)
T 3cky_A           71 AGIVETVMNGPGGVLSACKAG-TVIVDMS   98 (301)
T ss_dssp             HHHHHHHHHSTTCHHHHSCTT-CEEEECC
T ss_pred             HHHHHHHHcCcchHhhcCCCC-CEEEECC
Confidence            55344444       345565 5555553

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=95.94  E-value=0.1  Score=44.95  Aligned_cols=102  Identities=16%  Similarity=0.172  Sum_probs=64.7

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHHH
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~  205 (326)
                      ....++++++||-.|+|+ |.....+++.+ +..+|++++.++++.+.+++    .|..  .++..      +..+....
T Consensus        77 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~------D~~~~~~~  149 (274)
T 3ajd_A           77 IVLNPREDDFILDMCAAP-GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINA------DMRKYKDY  149 (274)
T ss_dssp             HHHCCCTTCEEEETTCTT-CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES------CHHHHHHH
T ss_pred             HHhCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeC------ChHhcchh
Confidence            345678899999888765 55566677654 43499999999998877654    4543  23332      22221111


Q ss_pred             h--cCCCccEEE-E--cCCc---------------------HHHHHHHHHHhhcCCcEEEEec
Q 020435          206 M--TDGGADYCF-E--CVGL---------------------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       206 ~--~~~g~d~v~-d--~~g~---------------------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .  ..+.+|.|+ |  |.+.                     ...+..+++.|+++ |+++...
T Consensus       150 ~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~st  211 (274)
T 3ajd_A          150 LLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD-GELVYST  211 (274)
T ss_dssp             HHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEEE
Confidence            1  134899998 5  3331                     34577888899998 9987754

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.94  E-value=0.02  Score=50.67  Aligned_cols=76  Identities=21%  Similarity=0.213  Sum_probs=49.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHH--HHHHhcC---CcEEEcCCCCCCccHHHHHHHhcCC-Ccc
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF--EIGKRFG---VTEFVNSKNCGDKSVSQIIIDMTDG-GAD  212 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~--~~~~~~g---~~~vi~~~~~~~~~~~~~i~~~~~~-g~d  212 (326)
                      +.+|||+|+ |.+|..+++.+...|. +|+++++++++.  +.++.++   .-.++..+- .+   .+.+.+...+ ++|
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl-~d---~~~~~~~~~~~~~d   77 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKIIHMDL-LE---FSNIIRTIEKVQPD   77 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCT-TC---HHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEEECCC-CC---HHHHHHHHHhcCCC
Confidence            578999997 9999999998888898 999999876543  2333332   112222111 11   2233333333 689


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      +||++++.
T Consensus        78 ~vih~A~~   85 (345)
T 2z1m_A           78 EVYNLAAQ   85 (345)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999874

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.94  E-value=0.042  Score=49.04  Aligned_cols=77  Identities=21%  Similarity=0.200  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHh-cC--CcEEEcCCCCCCccHHHHHHHhcCCCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-FG--VTEFVNSKNCGDKSVSQIIIDMTDGGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~-~g--~~~vi~~~~~~~~~~~~~i~~~~~~g~d~  213 (326)
                      .+.+|||+|+ |.+|..+++.+... |..+|+++++++++.+.+.+ +.  .-..+..+-   .+ .+.+.+... ++|+
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl---~d-~~~l~~~~~-~~D~   94 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDV---RD-LERLNYALE-GVDI   94 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCT---TC-HHHHHHHTT-TCSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCC---CC-HHHHHHHHh-cCCE
Confidence            4689999987 99999999888877 86589999999887765432 32  112222211   11 233444443 7999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      ||++++.
T Consensus        95 Vih~Aa~  101 (344)
T 2gn4_A           95 CIHAAAL  101 (344)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.94  E-value=0.02  Score=49.33  Aligned_cols=91  Identities=15%  Similarity=0.130  Sum_probs=62.8

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      .+|||+|+|-+|..+++.+...|. +|+++++++++.+.+...+++.+. .+-   .++.       -.++|+||.+++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~D~---~d~~-------~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLL-WPG---EEPS-------LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEE-SSS---SCCC-------CTTCCEEEECCCC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEE-ecc---cccc-------cCCCCEEEECCCc
Confidence            589999999999999999988898 999999999988877766654332 222   1211       1389999999874


Q ss_pred             H----HHHHHHHHHhhc--C-CcEEEEecc
Q 020435          221 A----SLVQEAYACCRK--G-WGKTIVLGV  243 (326)
Q Consensus       221 ~----~~~~~~~~~l~~--~-~G~~v~~g~  243 (326)
                      .    ......++.++.  . -.++|.++.
T Consensus        74 ~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           74 DSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             BTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             cccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            2    223444454443  1 157887764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.92  E-value=0.084  Score=45.69  Aligned_cols=41  Identities=20%  Similarity=0.444  Sum_probs=36.5

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  182 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~  182 (326)
                      .+|.|+|+|.+|..+++.+...|. +|++.++++++.+.+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence            589999999999999999999999 99999999988776643

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.91  E-value=0.02  Score=49.22  Aligned_cols=95  Identities=12%  Similarity=0.079  Sum_probs=59.9

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHhcCCcEEE-cCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          142 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~--g~~~V~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      +|||+|+ |.+|..+++.+...  |. +|+++++++++.+.+...++..+. |..+      .+.+.+... ++|+||++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d------~~~~~~~~~-~~d~vi~~   72 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYGD------EAALTSALQ-GVEKLLLI   72 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTCEEEECCTTC------HHHHHHHTT-TCSEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCCeEEEcCCCC------HHHHHHHHh-CCCEEEEe
Confidence            4899997 99999999888877  87 899999988776655544553322 2222      233444433 68999998


Q ss_pred             CCcH-----HHHHHHHHHhhcC-CcEEEEeccC
Q 020435          218 VGLA-----SLVQEAYACCRKG-WGKTIVLGVD  244 (326)
Q Consensus       218 ~g~~-----~~~~~~~~~l~~~-~G~~v~~g~~  244 (326)
                      ++..     .....+++.+... -++++.++..
T Consensus        73 a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~  105 (286)
T 2zcu_A           73 SSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLL  105 (286)
T ss_dssp             C--------CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             CCCCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            8742     1234444544432 1478887753

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.90  E-value=0.014  Score=51.96  Aligned_cols=89  Identities=22%  Similarity=0.316  Sum_probs=61.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.++++.+.+....+|+..         .++.+.+.     ..|+|+-+.
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~---------~~l~ell~-----~aDvV~l~~  208 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGLRQ---------VACSELFA-----SSDFILLAL  208 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTEEE---------CCHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCcee---------CCHHHHHh-----hCCEEEEcC
Confidence            47899999999999999999999999 9999998875555555566421         12333332     267887666


Q ss_pred             CcH-H----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 GLA-S----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~-~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ... .    .....+..++++ ..+|.++.
T Consensus       209 P~t~~t~~li~~~~l~~mk~g-ailIN~ar  237 (330)
T 4e5n_A          209 PLNADTLHLVNAELLALVRPG-ALLVNPCR  237 (330)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCHHHHHHhCHHHHhhCCCC-cEEEECCC
Confidence            531 1    123556677776 77777664

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=95.89  E-value=0.034  Score=48.64  Aligned_cols=96  Identities=16%  Similarity=0.150  Sum_probs=62.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC----------CcEEEcCCCCCCccHHHHHHHhc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----------VTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g----------~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ..+.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.-          .-.++.      .+..+.+.. .
T Consensus        89 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~l~~-~  160 (296)
T 1inl_A           89 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI------ANGAEYVRK-F  160 (296)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHGGG-C
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE------CcHHHHHhh-C
Confidence            3568999998765 666667777655459999999998888776521          112222      222222222 2


Q ss_pred             CCCccEEE-EcCCc----------HHHHHHHHHHhhcCCcEEEEec
Q 020435          208 DGGADYCF-ECVGL----------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ~~g~d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+.+|+|+ |....          ...++.+.+.|+++ |.++...
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  205 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAET  205 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            33899998 44221          35578899999998 9998864

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.88  E-value=0.047  Score=48.11  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC---hhHHHHH-Hhc----CCc-EEEcCCCCCCccH-HHHHHHhcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG-KRF----GVT-EFVNSKNCGDKSV-SQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~---~~~~~~~-~~~----g~~-~vi~~~~~~~~~~-~~~i~~~~~  208 (326)
                      .+.++||+|+|++|.+++..+...|+++|+++.|+   .++.+.+ +++    +.. .+++..+   .+. .+.+.    
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~---l~~~~~~l~----  219 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLAD---QHAFTEALA----  219 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTC---HHHHHHHHH----
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHh---hhhhHhhcc----
Confidence            57899999999999999999999998789999999   5555443 222    322 2333332   111 22222    


Q ss_pred             CCccEEEEcCCcH
Q 020435          209 GGADYCFECVGLA  221 (326)
Q Consensus       209 ~g~d~v~d~~g~~  221 (326)
                       .+|+||+|.+..
T Consensus       220 -~~DiIINaTp~G  231 (312)
T 3t4e_A          220 -SADILTNGTKVG  231 (312)
T ss_dssp             -HCSEEEECSSTT
T ss_pred             -CceEEEECCcCC
Confidence             489999988753

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=95.87  E-value=0.057  Score=51.03  Aligned_cols=79  Identities=19%  Similarity=0.244  Sum_probs=51.7

Q ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-------HHHHHhcCCcE-EE--cCCCCCCccHHHHHHH
Q 020435          137 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FEIGKRFGVTE-FV--NSKNCGDKSVSQIIID  205 (326)
Q Consensus       137 ~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-------~~~~~~~g~~~-vi--~~~~~~~~~~~~~i~~  205 (326)
                      ++++.++||+|+ |.+|..+++.+...|+.+|+.+.++...       .+.++..|... ++  |..+  .+.+.+.+.+
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd--~~~v~~~~~~  333 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAE--RDALAALVTA  333 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSC--HHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCC--HHHHHHHHhc
Confidence            467889999987 9999999998888898668888887632       12334456432 22  2222  1222222322


Q ss_pred             hcCCCccEEEEcCCc
Q 020435          206 MTDGGADYCFECVGL  220 (326)
Q Consensus       206 ~~~~g~d~v~d~~g~  220 (326)
                         +.+|+||++.|.
T Consensus       334 ---~~ld~VVh~AGv  345 (511)
T 2z5l_A          334 ---YPPNAVFHTAGI  345 (511)
T ss_dssp             ---SCCSEEEECCCC
T ss_pred             ---CCCcEEEECCcc
Confidence               479999999884

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.87  E-value=0.015  Score=51.37  Aligned_cols=79  Identities=9%  Similarity=0.071  Sum_probs=48.0

Q ss_pred             ccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHH--HHHHhc----CCcEEEcCCCCCCccHHHHHHHhcC
Q 020435          136 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF--EIGKRF----GVTEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       136 ~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~--~~~~~~----g~~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      ..+++.+|||+|+ |.+|..+++.+...|. +|++++++.++.  +.+..+    +. .++..+- .  + .+.+.+...
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dl-~--d-~~~~~~~~~   83 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDI-QYEDGDM-A--D-ACSVQRAVI   83 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGE-EEEECCT-T--C-HHHHHHHHH
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCccccccchhhccccCce-EEEECCC-C--C-HHHHHHHHH
Confidence            3567899999987 9999999999988898 999999876531  222222    12 2222221 1  1 223333333


Q ss_pred             C-CccEEEEcCCc
Q 020435          209 G-GADYCFECVGL  220 (326)
Q Consensus       209 ~-g~d~v~d~~g~  220 (326)
                      + ++|+||++++.
T Consensus        84 ~~~~d~Vih~A~~   96 (335)
T 1rpn_A           84 KAQPQEVYNLAAQ   96 (335)
T ss_dssp             HHCCSEEEECCSC
T ss_pred             HcCCCEEEECccc
Confidence            3 68999999874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.87  E-value=0.039  Score=49.03  Aligned_cols=89  Identities=21%  Similarity=0.250  Sum_probs=62.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+.+|.|+|.|.+|..+++.++..|. +|++.+++.++.+.+.+.|....         ++.+.+.     ..|+|+.++
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---------~l~e~l~-----~aDvVi~~v  218 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQAEFV---------STPELAA-----QSDFIVVAC  218 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTCEEC---------CHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCceeC---------CHHHHHh-----hCCEEEEeC
Confidence            46799999999999999999999999 89999988766666666664321         1222232     379999887


Q ss_pred             CcHH----HH-HHHHHHhhcCCcEEEEecc
Q 020435          219 GLAS----LV-QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~~----~~-~~~~~~l~~~~G~~v~~g~  243 (326)
                      ....    .+ ...+..++++ ..++.++.
T Consensus       219 p~~~~t~~~i~~~~~~~mk~g-ailIn~sr  247 (330)
T 2gcg_A          219 SLTPATEGLCNKDFFQKMKET-AVFINISR  247 (330)
T ss_dssp             CCCTTTTTCBSHHHHHHSCTT-CEEEECSC
T ss_pred             CCChHHHHhhCHHHHhcCCCC-cEEEECCC
Confidence            6431    12 3556778886 77766653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.86  E-value=0.037  Score=46.99  Aligned_cols=101  Identities=21%  Similarity=0.359  Sum_probs=67.3

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc----CCc--EEEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT--EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~----g~~--~vi~~~~~~~~~~~~~i~  204 (326)
                      +.......++.+||-+|+|. |..+..+++.. . +|++++.+++..+.+++.    +..  .++..+.   .++     
T Consensus        29 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~-~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~l-----   97 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATGG-GHVANAFAPFV-K-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----   97 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCTT-CHHHHHHGGGS-S-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----
T ss_pred             HHHHhCCCCCCEEEEEeCCC-CHHHHHHHHhC-C-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH---HhC-----
Confidence            44555677899999999873 66677777654 4 899999999888876542    322  2222221   111     


Q ss_pred             HhcCCCccEEEEcCCc------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          205 DMTDGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ...++.+|+|+....-      ...+..+.+.|+++ |.++....
T Consensus        98 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~~~~~  141 (260)
T 1vl5_A           98 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVDN  141 (260)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC-CEEEEEEc
Confidence            1112389999965432      34588999999998 99988754

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.83  E-value=0.023  Score=50.20  Aligned_cols=96  Identities=13%  Similarity=0.106  Sum_probs=63.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CC-------c--EEEcCCCCCCccHHHHHHHhc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV-------T--EFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~-------~--~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ..+.+||++|+|. |..+..+++..+..+|++++.+++..+.+++. ..       .  .++.      .+..+.+.. .
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~------~D~~~~l~~-~  178 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC------GDGFEFLKN-H  178 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC------SCHHHHHHH-C
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEE------ChHHHHHHh-c
Confidence            4568999998765 66666777765434999999999988887752 11       1  2221      334444433 3


Q ss_pred             CCCccEEEEcCCc----------HHHHHHHHHHhhcCCcEEEEec
Q 020435          208 DGGADYCFECVGL----------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ~~g~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+.+|+|+.-...          ...++.+.+.|+++ |.++...
T Consensus       179 ~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg-G~lv~~~  222 (314)
T 2b2c_A          179 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG  222 (314)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC-eEEEEEC
Confidence            3489999843311          35578889999998 9998764

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=95.83  E-value=0.057  Score=50.72  Aligned_cols=82  Identities=17%  Similarity=0.195  Sum_probs=53.6

Q ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH---H----HHHHhcCCcE-EE--cCCCCCCccHHHHHHH
Q 020435          137 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK---F----EIGKRFGVTE-FV--NSKNCGDKSVSQIIID  205 (326)
Q Consensus       137 ~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~---~----~~~~~~g~~~-vi--~~~~~~~~~~~~~i~~  205 (326)
                      ++++.++||+|+ |.+|..+++.+...|+.+|+.+.++...   .    +.++..|... ++  |..+  .+.+.+.+.+
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d--~~~v~~~~~~  300 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD--RESVRELLGG  300 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCC--HHHHHHHHHH
Confidence            467889999987 9999999998888898569999987642   1    2344456432 22  2222  1233334444


Q ss_pred             hcCC-CccEEEEcCCc
Q 020435          206 MTDG-GADYCFECVGL  220 (326)
Q Consensus       206 ~~~~-g~d~v~d~~g~  220 (326)
                      .... .+|.||++.|.
T Consensus       301 i~~~g~ld~VIh~AG~  316 (486)
T 2fr1_A          301 IGDDVPLSAVFHAAAT  316 (486)
T ss_dssp             SCTTSCEEEEEECCCC
T ss_pred             HHhcCCCcEEEECCcc
Confidence            4222 78999999884

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.81  E-value=0.056  Score=46.91  Aligned_cols=74  Identities=16%  Similarity=0.243  Sum_probs=51.3

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc----CCc-EEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          139 VGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVT-EFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       139 ~~~~vlI~G-ag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~----g~~-~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      ++.++||+| +|++|.+++..+...|+ +|+++.++.++.+.+. ++    +.. ...|..+   .   +.+.+... .+
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~-~~  189 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD---D---ASRAEAVK-GA  189 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS---H---HHHHHHTT-TC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC---H---HHHHHHHH-hC
Confidence            578999999 59999999999999999 7999999987765432 22    322 2233332   1   23333322 58


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |+++++++.
T Consensus       190 DvlVn~ag~  198 (287)
T 1lu9_A          190 HFVFTAGAI  198 (287)
T ss_dssp             SEEEECCCT
T ss_pred             CEEEECCCc
Confidence            999999973

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.80  E-value=0.019  Score=48.98  Aligned_cols=77  Identities=17%  Similarity=0.200  Sum_probs=48.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh-HHHHHHh----cCCc-EEE--cCCCCCCccHHHHHHHhcC--
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~-~~~~~~~----~g~~-~vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      +.++||+|+ |++|.++++.+...|+ +|+++++..+ ..+.+++    .+.. .++  |..+  .+++.+.+.+...  
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTK--KEDLHKIVEEAMSHF   83 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            578999987 9999999999999999 8988865543 3333332    2322 222  2222  1223333333322  


Q ss_pred             CCccEEEEcCC
Q 020435          209 GGADYCFECVG  219 (326)
Q Consensus       209 ~g~d~v~d~~g  219 (326)
                      +++|++|+++|
T Consensus        84 g~id~lv~~Ag   94 (264)
T 3i4f_A           84 GKIDFLINNAG   94 (264)
T ss_dssp             SCCCEEECCCC
T ss_pred             CCCCEEEECCc
Confidence            28999999998

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.79  E-value=0.029  Score=45.63  Aligned_cols=62  Identities=24%  Similarity=0.336  Sum_probs=43.0

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      ++||+|+ |.+|..+++.+. .|. +|++++++++          ....|..+  .+.+.+.+.+.  +++|++|++++
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~--~~~~~~~~~~~--~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITN--IDSIKKMYEQV--GKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTC--HHHHHHHHHHH--CCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCC--HHHHHHHHHHh--CCCCEEEECCC
Confidence            7999987 999999999888 898 9999998764          12223322  12233333333  37899999887

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.79  E-value=0.057  Score=48.22  Aligned_cols=92  Identities=11%  Similarity=0.103  Sum_probs=63.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      -.+|.|+|.|.+|..+++.++..|. +|++.++++++.+.++++|+.. .       .+..+.+.+. ..+.|+||-|+.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~-~-------~~~~e~~~~a-~~~aDlVilavP   77 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDV-S-------ADLEATLQRA-AAEDALIVLAVP   77 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCE-E-------SCHHHHHHHH-HHTTCEEEECSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCee-e-------CCHHHHHHhc-ccCCCEEEEeCC
Confidence            3579999999999999999999998 8999999999999888888742 1       2233333321 015799999998


Q ss_pred             cHHHHHHHHH---HhhcCCcEEEEecc
Q 020435          220 LASLVQEAYA---CCRKGWGKTIVLGV  243 (326)
Q Consensus       220 ~~~~~~~~~~---~l~~~~G~~v~~g~  243 (326)
                      ... ....+.   -++++ ..++.++.
T Consensus        78 ~~~-~~~vl~~l~~~~~~-~iv~Dv~S  102 (341)
T 3ktd_A           78 MTA-IDSLLDAVHTHAPN-NGFTDVVS  102 (341)
T ss_dssp             HHH-HHHHHHHHHHHCTT-CCEEECCS
T ss_pred             HHH-HHHHHHHHHccCCC-CEEEEcCC
Confidence            654 333332   23454 55555543

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.79  E-value=0.046  Score=47.71  Aligned_cols=92  Identities=15%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++.+.+ +.  +.. ++..+    -. .+.+.+... ++|+||++++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~--~~~-~~~~D----l~-~~~~~~~~~-~~d~Vih~a~   71 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA-IN--DYE-YRVSD----YT-LEDLINQLN-DVDAVVHLAA   71 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC--------CCE-EEECC----CC-HHHHHHHTT-TCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc-CC--ceE-EEEcc----cc-HHHHHHhhc-CCCEEEEccc
Confidence            68999997 9999999999999998 9999999855554 43  332 33332    23 555666554 8999999887


Q ss_pred             cH-------------HHHHHHHHHhhcC-CcEEEEecc
Q 020435          220 LA-------------SLVQEAYACCRKG-WGKTIVLGV  243 (326)
Q Consensus       220 ~~-------------~~~~~~~~~l~~~-~G~~v~~g~  243 (326)
                      ..             .....+++.+... -.++|.++.
T Consensus        72 ~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS  109 (311)
T 3m2p_A           72 TRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAST  109 (311)
T ss_dssp             CCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            42             1123445555443 136777764

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=95.77  E-value=0.067  Score=50.32  Aligned_cols=80  Identities=16%  Similarity=0.264  Sum_probs=51.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-------HHHHHhcCCcEEEcCCCCC-CccHHHHHHHhcCC-C
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FEIGKRFGVTEFVNSKNCG-DKSVSQIIIDMTDG-G  210 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-------~~~~~~~g~~~vi~~~~~~-~~~~~~~i~~~~~~-g  210 (326)
                      .++||+|+ |+||..+++.+...|+.+|+.+.++...       .+.+++.|....+-.-+.. .+.+.+.+.+.... +
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g~  319 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDAP  319 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTSC
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            89999986 9999999998888898788888876321       2334456654322111111 12333344444333 8


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++|++.|.
T Consensus       320 ld~vVh~AGv  329 (496)
T 3mje_A          320 LTAVFHSAGV  329 (496)
T ss_dssp             EEEEEECCCC
T ss_pred             CeEEEECCcc
Confidence            9999998884

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=95.76  E-value=0.05  Score=46.45  Aligned_cols=102  Identities=17%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC---cEEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV---TEFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~---~~vi~~~~~~~~~~~~~i  203 (326)
                      +.+...+.++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++    .|.   -.++..+-   .++    
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~----  123 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADA---MDL----  123 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc---ccC----
Confidence            45667788999999999876 7778888887787 99999999988777654    232   12332221   111    


Q ss_pred             HHhcCCCccEEEEcCC------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          204 IDMTDGGADYCFECVG------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       ....+.+|+|+....      ....+..+.+.|+++ |.++....
T Consensus       124 -~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~  167 (273)
T 3bus_A          124 -PFEDASFDAVWALESLHHMPDRGRALREMARVLRPG-GTVAIADF  167 (273)
T ss_dssp             -CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE-EEEEEEEE
T ss_pred             -CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence             011237999984321      234577888999998 99987754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.75  E-value=0.1  Score=44.35  Aligned_cols=34  Identities=29%  Similarity=0.330  Sum_probs=29.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      +.+|+|+|+|++|..++..+...|.+++..++.+
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            5799999999999999999999999888888654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=95.74  E-value=0.083  Score=43.84  Aligned_cols=98  Identities=11%  Similarity=0.093  Sum_probs=65.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhcCC-CccE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADY  213 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~  213 (326)
                      ++++||=+|+|. |..++.+|+...-..|++++.+++..+.+++    .+.+.+--. .   .+..+.+...... .+|.
T Consensus        34 ~~~~vLDiGcG~-G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~-~---~Da~~~l~~~~~~~~~d~  108 (218)
T 3dxy_A           34 EAPVTLEIGFGM-GASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVM-C---HDAVEVLHKMIPDNSLRM  108 (218)
T ss_dssp             CCCEEEEESCTT-CHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEE-C---SCHHHHHHHHSCTTCEEE
T ss_pred             CCCeEEEEeeeC-hHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEE-E---CCHHHHHHHHcCCCChhe
Confidence            577899888876 7777888887643389999999998776543    444322111 1   3444444443333 8999


Q ss_pred             EEEcCCcH--------------HHHHHHHHHhhcCCcEEEEec
Q 020435          214 CFECVGLA--------------SLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       214 v~d~~g~~--------------~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      |+-....+              ..+..+.+.|+++ |.+++..
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpG-G~l~i~t  150 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLG-GVFHMAT  150 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCC-cEEEEEe
Confidence            88553322              3688899999998 9987764

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=95.69  E-value=0.043  Score=46.39  Aligned_cols=40  Identities=25%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEI  179 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~~~~~~  179 (326)
                      ++.++||+|+ +++|.++++.+...|+ +|+++ .++.++.+.
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~   47 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEE   47 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Confidence            4789999987 8999999999999999 88775 555554443

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.68  E-value=0.032  Score=47.88  Aligned_cols=79  Identities=13%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEc-CChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~-~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      .+.++||+|+ |++|.++++.+...|+ +|++++ ++.+..+..    +..+.. .++  |..+  .+++.+.+.+... 
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~  100 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVAD--FESCERCAEKVLAD  100 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999999999999 898887 454443332    223322 222  2222  1222222333222 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++|+++|.
T Consensus       101 ~g~id~li~nAg~  113 (269)
T 3gk3_A          101 FGKVDVLINNAGI  113 (269)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence             279999998874

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=95.68  E-value=0.047  Score=51.81  Aligned_cols=84  Identities=12%  Similarity=0.084  Sum_probs=52.1

Q ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEE-cCCh-------------hH----HHHHHhcCCcEEEcCCCCC-C
Q 020435          137 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVIS-------------EK----FEIGKRFGVTEFVNSKNCG-D  196 (326)
Q Consensus       137 ~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~-~~~~-------------~~----~~~~~~~g~~~vi~~~~~~-~  196 (326)
                      ++++.++||+|+ |++|..+++.+...|+.+|+.+ .++.             ++    .+.++..|....+-.-+.. .
T Consensus       248 ~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~  327 (525)
T 3qp9_A          248 WQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDA  327 (525)
T ss_dssp             SCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSH
T ss_pred             ecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCH
Confidence            467889999987 9999999998888898557777 7763             21    2334445653222111111 1


Q ss_pred             ccHHHHHHHhcCC-CccEEEEcCCc
Q 020435          197 KSVSQIIIDMTDG-GADYCFECVGL  220 (326)
Q Consensus       197 ~~~~~~i~~~~~~-g~d~v~d~~g~  220 (326)
                      +.+.+.+.+.... ++|.||+++|.
T Consensus       328 ~~v~~~~~~i~~~g~id~vVh~AGv  352 (525)
T 3qp9_A          328 EAAARLLAGVSDAHPLSAVLHLPPT  352 (525)
T ss_dssp             HHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCcEEEECCcC
Confidence            2333344444322 89999999884

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.68  E-value=0.044  Score=47.36  Aligned_cols=96  Identities=13%  Similarity=0.106  Sum_probs=64.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-c-----CC----cEEEcCCCCCCccHHHHHHHhc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F-----GV----TEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~-----g~----~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ..+.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++ +     +.    -+++..+      ..+.+.. .
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D------~~~~l~~-~  145 (275)
T 1iy9_A           74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD------GFMHIAK-S  145 (275)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC------SHHHHHT-C
T ss_pred             CCCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECc------HHHHHhh-C
Confidence            3578999998764 5666677777665599999999998887765 2     11    1333322      2333333 2


Q ss_pred             CCCccEEEE-cCC---------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          208 DGGADYCFE-CVG---------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ~~g~d~v~d-~~g---------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+.+|+|+- ...         ....++.+.+.|+++ |.++...
T Consensus       146 ~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pg-G~lv~~~  189 (275)
T 1iy9_A          146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT  189 (275)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            348999984 332         145688999999998 9998864

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.67  E-value=0.04  Score=45.77  Aligned_cols=99  Identities=19%  Similarity=0.329  Sum_probs=66.3

Q ss_pred             hcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC-cEEEcCCCCCCccHHHHHHHhcC
Q 020435          134 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       134 ~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      ...++++++||-.|+|..|..+..+++..+. +|++++.+++..+.+++    .+. -.++..+.   ..+    ..+..
T Consensus        50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~---~~~----~~~~~  121 (230)
T 3evz_A           50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG---GII----KGVVE  121 (230)
T ss_dssp             HTTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS---CSS----TTTCC
T ss_pred             HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc---hhh----hhccc
Confidence            3446789999999988558888888887666 99999999998877653    332 23333321   001    11222


Q ss_pred             CCccEEEEcCCc-------------------------HHHHHHHHHHhhcCCcEEEEe
Q 020435          209 GGADYCFECVGL-------------------------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       209 ~g~d~v~d~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +.+|+|+....-                         ...+..+.+.|+++ |.++.+
T Consensus       122 ~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  178 (230)
T 3evz_A          122 GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALY  178 (230)
T ss_dssp             SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEE
T ss_pred             CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEE
Confidence            489999843210                         34577788889998 998876

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.67  E-value=0.092  Score=46.97  Aligned_cols=98  Identities=12%  Similarity=0.154  Sum_probs=60.7

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHH--HHHHhc-CCcEEEcCC-CCCCccHHHHHHHhcCCCccEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF--EIGKRF-GVTEFVNSK-NCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~--~~~~~~-g~~~vi~~~-~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      +.+|||+|+ |.+|..+++.+...|. +|+++++++++.  +.+... ++ .++..+ - .+.   +.+.+... ++|+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~l~~~~~v-~~v~~D~l-~d~---~~l~~~~~-~~d~V   77 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLIAEELQAIPNV-TLFQGPLL-NNV---PLMDTLFE-GAHLA   77 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSHHHHHHHTSTTE-EEEESCCT-TCH---HHHHHHHT-TCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCChhhHHHHhhcCCc-EEEECCcc-CCH---HHHHHHHh-cCCEE
Confidence            568999997 9999999988888898 899999887654  333333 33 233222 1 112   23333332 68999


Q ss_pred             EEcCCcH-----HHHHHHHHHhhcC--CcEEEEeccC
Q 020435          215 FECVGLA-----SLVQEAYACCRKG--WGKTIVLGVD  244 (326)
Q Consensus       215 ~d~~g~~-----~~~~~~~~~l~~~--~G~~v~~g~~  244 (326)
                      |.+.+..     .....+++.+...  -+++|.++..
T Consensus        78 i~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           78 FINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             EECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence            9766542     1134555555543  0488888754

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.66  E-value=0.1  Score=48.50  Aligned_cols=95  Identities=7%  Similarity=-0.005  Sum_probs=59.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      +.+|+|+|+|.+|..+++.+...|. +|++++++.++.+.+.+ ++....+..+-   .+. +.+.+... ++|+|++|+
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv---~d~-~~l~~~l~-~~DvVIn~a   76 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDV---NDD-AALDAEVA-KHDLVISLI   76 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCT---TCH-HHHHHHHT-TSSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeec---CCH-HHHHHHHc-CCcEEEECC
Confidence            5689999999999999988888898 89999999887765533 43212221111   111 22333222 799999999


Q ss_pred             CcHHHHHHHHHHhhcCCcEEEEe
Q 020435          219 GLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       219 g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +..........++..+ -.++..
T Consensus        77 ~~~~~~~i~~a~l~~g-~~vvd~   98 (450)
T 1ff9_A           77 PYTFHATVIKSAIRQK-KHVVTT   98 (450)
T ss_dssp             C--CHHHHHHHHHHHT-CEEEES
T ss_pred             ccccchHHHHHHHhCC-CeEEEe
Confidence            8643233344566665 555544

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.66  E-value=0.064  Score=46.74  Aligned_cols=92  Identities=15%  Similarity=0.189  Sum_probs=58.7

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC-----hhHHHHHH---hcCCcEEEcCCCCCCccHHHHHHHhcCCC
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-----SEKFEIGK---RFGVTEFVNSKNCGDKSVSQIIIDMTDGG  210 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~-----~~~~~~~~---~~g~~~vi~~~~~~~~~~~~~i~~~~~~g  210 (326)
                      ..+|||+|+ |.+|..+++.+...|. +|++++++     +++.+.++   ..++. ++..+-   .+ .+.+.+... +
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~~-~~~~D~---~d-~~~l~~~~~-~   76 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAK-LIEASL---DD-HQRLVDALK-Q   76 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCE-EECCCS---SC-HHHHHHHHT-T
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcccchhHHHHHHHHHhCCeE-EEeCCC---CC-HHHHHHHHh-C
Confidence            357999997 9999999999988898 89999987     34444333   23443 332221   11 233444333 6


Q ss_pred             ccEEEEcCCcH------HHHHHHHHHhhcCCc---EEE
Q 020435          211 ADYCFECVGLA------SLVQEAYACCRKGWG---KTI  239 (326)
Q Consensus       211 ~d~v~d~~g~~------~~~~~~~~~l~~~~G---~~v  239 (326)
                      +|+||++++..      .....+++.++.. |   ++|
T Consensus        77 ~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~-g~v~~~v  113 (313)
T 1qyd_A           77 VDVVISALAGGVLSHHILEQLKLVEAIKEA-GNIKRFL  113 (313)
T ss_dssp             CSEEEECCCCSSSSTTTTTHHHHHHHHHHS-CCCSEEE
T ss_pred             CCEEEECCccccchhhHHHHHHHHHHHHhc-CCCceEE
Confidence            99999988743      2234556666654 4   676

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=95.66  E-value=0.05  Score=42.69  Aligned_cols=99  Identities=19%  Similarity=0.203  Sum_probs=63.1

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC-CCccEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD-GGADYC  214 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~-~g~d~v  214 (326)
                      ++++++||..|+|. |..+..+++..|. .++++++.++ ..+.    ..-.++..+- ......+.+.+... +.+|+|
T Consensus        20 ~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d~-~~~~~~~~~~~~~~~~~~D~i   92 (180)
T 1ej0_A           20 FKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGDF-RDELVMKALLERVGDSKVQVV   92 (180)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESCT-TSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEccc-ccchhhhhhhccCCCCceeEE
Confidence            67889999999877 7788888887632 2999999886 3221    2112332222 11222233443333 389999


Q ss_pred             EE-----cCCc------------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          215 FE-----CVGL------------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       215 ~d-----~~g~------------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.     ..+.            ...+..+.+.|+++ |.++....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  137 (180)
T 1ej0_A           93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKVF  137 (180)
T ss_dssp             EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            96     2222            35577888999998 99987654

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.65  E-value=0.037  Score=49.48  Aligned_cols=88  Identities=22%  Similarity=0.256  Sum_probs=61.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.++++.+.+...  ++..+        .++.+.+.     ..|+|+-+.
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~--g~~~~--------~~l~ell~-----~sDvV~l~~  235 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE--GAIYH--------DTLDSLLG-----ASDIFLIAA  235 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHT--TCEEC--------SSHHHHHH-----TCSEEEECS
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchhhhc--CCeEe--------CCHHHHHh-----hCCEEEEec
Confidence            36899999999999999999999999 9999998865544332  43221        12333332     478888776


Q ss_pred             CcH-H----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 GLA-S----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~-~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ... .    .-...+..++++ ..+|.++.
T Consensus       236 Plt~~T~~li~~~~l~~mk~g-ailIN~aR  264 (345)
T 4g2n_A          236 PGRPELKGFLDHDRIAKIPEG-AVVINISR  264 (345)
T ss_dssp             CCCGGGTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred             CCCHHHHHHhCHHHHhhCCCC-cEEEECCC
Confidence            631 1    124667788887 77877764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.64  E-value=0.05  Score=49.85  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCC
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGG  210 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g  210 (326)
                      +.+...+.++.+||-+|+|. |..+..+++ .|. +|++++.+++..+.+++.+.......-.   .+..+.+. ...+.
T Consensus        99 l~~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~---~~~~~~l~-~~~~~  171 (416)
T 4e2x_A           99 FLATELTGPDPFIVEIGCND-GIMLRTIQE-AGV-RHLGFEPSSGVAAKAREKGIRVRTDFFE---KATADDVR-RTEGP  171 (416)
T ss_dssp             HHHTTTCSSSCEEEEETCTT-TTTHHHHHH-TTC-EEEEECCCHHHHHHHHTTTCCEECSCCS---HHHHHHHH-HHHCC
T ss_pred             HHHHhCCCCCCEEEEecCCC-CHHHHHHHH-cCC-cEEEECCCHHHHHHHHHcCCCcceeeec---hhhHhhcc-cCCCC
Confidence            33455667899999999765 555556655 477 9999999999999998877654432222   22222222 22348


Q ss_pred             ccEEEEcCC------cHHHHHHHHHHhhcCCcEEEEe
Q 020435          211 ADYCFECVG------LASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       211 ~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +|+|+....      -...+..+.++|+++ |.++..
T Consensus       172 fD~I~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~  207 (416)
T 4e2x_A          172 ANVIYAANTLCHIPYVQSVLEGVDALLAPD-GVFVFE  207 (416)
T ss_dssp             EEEEEEESCGGGCTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEEEECChHHhcCCHHHHHHHHHHHcCCC-eEEEEE
Confidence            999985433      234578899999998 999875

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=95.64  E-value=0.037  Score=47.38  Aligned_cols=80  Identities=14%  Similarity=0.085  Sum_probs=48.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEE-EcCChhHHHHH----HhcCCc-EEEcCCCCCCccHHHHHHHhcC--CC
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFEIG----KRFGVT-EFVNSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~-~~~~~~~~~~~----~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      +.++||+|+ |++|..+++.+...|+ +|++ ..++.++.+..    ++.+.. .++..+-.+.+++.+.+.+...  ++
T Consensus        26 ~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (267)
T 4iiu_A           26 SRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGA  104 (267)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            678999987 9999999999999999 7755 45565554432    223322 2332221011223333333222  38


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus       105 id~li~nAg~  114 (267)
T 4iiu_A          105 WYGVVSNAGI  114 (267)
T ss_dssp             CSEEEECCCC
T ss_pred             ccEEEECCCC
Confidence            9999998874

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.63  E-value=0.061  Score=47.88  Aligned_cols=87  Identities=17%  Similarity=0.129  Sum_probs=60.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.+++.++.  +.+. ++    ..    .++.+.+.     ..|+|+.+.
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~~~~-~~----~~----~~l~ell~-----~aDvV~l~~  207 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE--LEKK-GY----YV----DSLDDLYK-----QADVISLHV  207 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH--HHHT-TC----BC----SCHHHHHH-----HCSEEEECS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh--HHhh-Ce----ec----CCHHHHHh-----hCCEEEEcC
Confidence            47799999999999999999999999 999999887654  2332 22    11    12333332     379998877


Q ss_pred             CcHH----HH-HHHHHHhhcCCcEEEEecc
Q 020435          219 GLAS----LV-QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~~----~~-~~~~~~l~~~~G~~v~~g~  243 (326)
                      ....    .+ ...+..++++ +.+|.++.
T Consensus       208 p~~~~t~~li~~~~l~~mk~g-a~lIn~ar  236 (333)
T 1j4a_A          208 PDVPANVHMINDESIAKMKQD-VVIVNVSR  236 (333)
T ss_dssp             CCCGGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred             CCcHHHHHHHhHHHHhhCCCC-cEEEECCC
Confidence            6432    11 3566788887 88887765

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=95.62  E-value=0.066  Score=48.12  Aligned_cols=128  Identities=20%  Similarity=0.274  Sum_probs=80.8

Q ss_pred             CEEEEEccCHHHHHHHHHHHHc-CCCEEEEE-cCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          141 STVVIFGLGSIGLAVAEGARLC-GATRIIGV-DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~-~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      -+|.|+|.|.+|...+..++.. ++ +++++ ++++++.+.++++|+. +  +     .++.+.+.+   ..+|+|+-|.
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~a~~~g~~-~--~-----~~~~~ll~~---~~~D~V~i~t   73 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNL-EVHGVFDILAEKREAAAQKGLK-I--Y-----ESYEAVLAD---EKVDAVLIAT   73 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTE-EEEEEECSSHHHHHHHHTTTCC-B--C-----SCHHHHHHC---TTCCEEEECS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHhcCCc-e--e-----CCHHHHhcC---CCCCEEEEcC
Confidence            4789999999999888877765 66 66654 6777777777777763 2  1     234443332   2799999999


Q ss_pred             CcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHH---HH----hcCCE-EEeeeccCCCCCCCHHHHHHHHhCCCC
Q 020435          219 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE---VL----HSGKI-LMGSLFGGLKAKSDIPILLKRYMDKEL  290 (326)
Q Consensus       219 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~~----~~~~~-i~~~~~~~~~~~~~~~~~~~l~~~g~~  290 (326)
                      ........+..++..+  .-|++...     +..+...   +.    .+++. ..++.   ......++.+-+++++|.+
T Consensus        74 p~~~h~~~~~~al~aG--khVl~EKP-----~a~~~~ea~~l~~~a~~~g~~~~v~~~---~r~~p~~~~~k~~i~~g~i  143 (359)
T 3e18_A           74 PNDSHKELAISALEAG--KHVVCEKP-----VTMTSEDLLAIMDVAKRVNKHFMVHQN---RRWDEDFLIIKEMFEQKTI  143 (359)
T ss_dssp             CGGGHHHHHHHHHHTT--CEEEEESS-----CCSSHHHHHHHHHHHHHHTCCEEEECG---GGGCHHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHHHHCC--CCEEeeCC-----CcCCHHHHHHHHHHHHHhCCeEEEEee---eccCHHHHHHHHHHHcCCC
Confidence            8877688888888874  55666432     2222211   11    12333 33331   2223467888888888865

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.60  E-value=0.038  Score=53.43  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh---------hHHH----HHHhcCCcEEEcCCCCCC-ccHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS---------EKFE----IGKRFGVTEFVNSKNCGD-KSVSQII  203 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~---------~~~~----~~~~~g~~~vi~~~~~~~-~~~~~~i  203 (326)
                      .+.++||+|+ +++|.+.++.+...|+ +|++++++.         ++.+    .++..|...+.+..+..+ +.+.+.+
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~   85 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETA   85 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence            4678899987 8999999999999999 999987654         3333    233445444555544111 1233333


Q ss_pred             HHhcCCCccEEEEcCCc
Q 020435          204 IDMTDGGADYCFECVGL  220 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g~  220 (326)
                      .+.. +++|++++++|.
T Consensus        86 ~~~~-G~iDiLVnNAGi  101 (604)
T 2et6_A           86 VKNF-GTVHVIINNAGI  101 (604)
T ss_dssp             HHHH-SCCCEEEECCCC
T ss_pred             HHHc-CCCCEEEECCCC
Confidence            3322 389999999884

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=95.59  E-value=0.012  Score=49.49  Aligned_cols=101  Identities=9%  Similarity=0.096  Sum_probs=65.3

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHH
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  203 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i  203 (326)
                      .......++.+||-+|+|. |..+..+++.. +. +|++++.+++..+.+++    .+..   .++..+.      .+.+
T Consensus        64 ~~~~~~~~~~~vLDiG~G~-G~~~~~la~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~------~~~~  135 (232)
T 3ntv_A           64 KQLIRMNNVKNILEIGTAI-GYSSMQFASISDDI-HVTTIERNETMIQYAKQNLATYHFENQVRIIEGNA------LEQF  135 (232)
T ss_dssp             HHHHHHHTCCEEEEECCSS-SHHHHHHHTTCTTC-EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCG------GGCH
T ss_pred             HHHHhhcCCCEEEEEeCch-hHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH------HHHH
Confidence            3444556789999998765 66667777754 45 99999999988877654    3432   3333222      1222


Q ss_pred             H-HhcCCCccEEE-EcCCc--HHHHHHHHHHhhcCCcEEEEec
Q 020435          204 I-DMTDGGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       204 ~-~~~~~g~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      . .. .+.+|+|| |....  ...+..+.+.|+++ |.++.-.
T Consensus       136 ~~~~-~~~fD~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~d~  176 (232)
T 3ntv_A          136 ENVN-DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQ-GLVITDN  176 (232)
T ss_dssp             HHHT-TSCEEEEEEETTSSSHHHHHHHHGGGEEEE-EEEEEEC
T ss_pred             Hhhc-cCCccEEEEcCcHHHHHHHHHHHHHhcCCC-eEEEEee
Confidence            2 12 34899998 33222  34467888999998 9887743

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=95.59  E-value=0.051  Score=44.71  Aligned_cols=102  Identities=18%  Similarity=0.173  Sum_probs=67.9

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHH-hcCC-
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID-MTDG-  209 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~-~~~~-  209 (326)
                      .......++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++.+...++..      ++.+.... ...+ 
T Consensus        45 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~~~  115 (227)
T 3e8s_A           45 LLAILGRQPERVLDLGCGE-GWLLRALADR-GI-EAVGVDGDRTLVDAARAAGAGEVHLA------SYAQLAEAKVPVGK  115 (227)
T ss_dssp             HHHHHHTCCSEEEEETCTT-CHHHHHHHTT-TC-EEEEEESCHHHHHHHHHTCSSCEEEC------CHHHHHTTCSCCCC
T ss_pred             HHHhhcCCCCEEEEeCCCC-CHHHHHHHHC-CC-EEEEEcCCHHHHHHHHHhcccccchh------hHHhhcccccccCC
Confidence            3344455679999998765 6666666666 87 99999999999998887643333322      22221111 1233 


Q ss_pred             CccEEEEcCC-----cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          210 GADYCFECVG-----LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       210 g~d~v~d~~g-----~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+|+|+....     -...+..+.+.|+++ |.++....
T Consensus       116 ~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~~  153 (227)
T 3e8s_A          116 DYDLICANFALLHQDIIELLSAMRTLLVPG-GALVIQTL  153 (227)
T ss_dssp             CEEEEEEESCCCSSCCHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             CccEEEECchhhhhhHHHHHHHHHHHhCCC-eEEEEEec
Confidence            5999986432     235588999999998 99988754

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.58  E-value=0.033  Score=50.03  Aligned_cols=74  Identities=16%  Similarity=0.265  Sum_probs=49.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCC-CccHHHHHHHhcCCCccEEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCG-DKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~-~~~~~~~i~~~~~~g~d~v~  215 (326)
                      ..+|||+|+ |.+|..+++.+... |. +|+++++++++.+.+.. .++ .++..+- . +.+..+.+.+    ++|+||
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~v-~~~~~Dl-~~d~~~~~~~~~----~~d~Vi   96 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDLVKHERM-HFFEGDI-TINKEWVEYHVK----KCDVIL   96 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGGGGSTTE-EEEECCT-TTCHHHHHHHHH----HCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhhccCCCe-EEEeCcc-CCCHHHHHHHhc----cCCEEE
Confidence            469999997 99999999988877 88 99999998877655443 233 2332221 1 1222222222    699999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      ++++.
T Consensus        97 h~A~~  101 (372)
T 3slg_A           97 PLVAI  101 (372)
T ss_dssp             ECBCC
T ss_pred             EcCcc
Confidence            98874

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=95.58  E-value=0.031  Score=48.50  Aligned_cols=71  Identities=13%  Similarity=0.064  Sum_probs=52.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCC---cEEEcCCCCCCccHHHHHHHhcCCCccEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV---TEFVNSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~---~~vi~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      .+.+++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+ +.++.   ..+...++            +. .++|+|
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~------------l~-~~aDiI  191 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQ------------LK-QSYDVI  191 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG------------CC-SCEEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHH------------hc-CCCCEE
Confidence            578999999999999999988889976899999998886654 33432   23333222            11 379999


Q ss_pred             EEcCCcHH
Q 020435          215 FECVGLAS  222 (326)
Q Consensus       215 ~d~~g~~~  222 (326)
                      |+|.+...
T Consensus       192 InaTp~gm  199 (281)
T 3o8q_A          192 INSTSASL  199 (281)
T ss_dssp             EECSCCCC
T ss_pred             EEcCcCCC
Confidence            99987653

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.58  E-value=0.024  Score=48.43  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=57.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      .+ +++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+.+ ++.   ...     .++.+.+.     ++|+||+|
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~-----~~~~~~~~-----~aDiVIna  173 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSL-----DQLDEVVK-----KAKSLFNT  173 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEG-----GGHHHHHH-----TCSEEEEC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCH-----HHHHhhhc-----CCCEEEEC
Confidence            46 99999999999999999999998789999999888765432 321   221     22322222     58999998


Q ss_pred             CCcHHH---HHHHHHHhhcCCcEEEEec
Q 020435          218 VGLASL---VQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       218 ~g~~~~---~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+....   .......++++ ..++.+.
T Consensus       174 tp~gm~p~~~~i~~~~l~~~-~~V~Div  200 (253)
T 3u62_A          174 TSVGMKGEELPVSDDSLKNL-SLVYDVI  200 (253)
T ss_dssp             SSTTTTSCCCSCCHHHHTTC-SEEEECS
T ss_pred             CCCCCCCCCCCCCHHHhCcC-CEEEEee
Confidence            863210   00013456676 6666553

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.57  E-value=0.024  Score=50.15  Aligned_cols=77  Identities=12%  Similarity=0.091  Sum_probs=47.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH-HHHhcCCcEEEcCCCCCCc-cHHHHHHHhcCCCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDK-SVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~-~~~~~g~~~vi~~~~~~~~-~~~~~i~~~~~~g~d~v~  215 (326)
                      .+.+|||+|+ |.+|..+++.+...|. +|++++++.+... .+..+..-.++..+- .+. .+.+.+.+.   ++|+||
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl-~d~~~~~~~~~~~---~~D~vi   93 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFATGKREVLPPVAGLSVIEGSV-TDAGLLERAFDSF---KPTHVV   93 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCSSSCGGGSCSCTTEEEEECCT-TCHHHHHHHHHHH---CCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCccchhhhhccCCceEEEeeC-CCHHHHHHHHhhc---CCCEEE
Confidence            4679999997 9999999999888898 9999998654322 112222112232221 112 222333322   799999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      ++++.
T Consensus        94 h~A~~   98 (330)
T 2pzm_A           94 HSAAA   98 (330)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99873

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=95.57  E-value=0.028  Score=48.79  Aligned_cols=98  Identities=12%  Similarity=0.168  Sum_probs=65.1

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CC-------c--EEEcCCCCCCccHHHHHHHh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV-------T--EFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~-------~--~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ..++.+||++|+|. |..+..+++..+..+|++++.+++..+.+++. ..       .  .++.      .+..+.+...
T Consensus        76 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~l~~~  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI------EDASKFLENV  148 (283)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE------SCHHHHHHHC
T ss_pred             CCCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE------CChHHHHHhC
Confidence            34678999998764 55666677765444999999999988887652 21       1  2222      2333333332


Q ss_pred             cCCCccEEE-EcCC---------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          207 TDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       207 ~~~g~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       .+.+|+|+ |...         ....++.+.+.|+++ |.++....
T Consensus       149 -~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~~  193 (283)
T 2i7c_A          149 -TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN-GYCVAQCE  193 (283)
T ss_dssp             -CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             -CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEECC
Confidence             34899998 4321         135688899999998 99987743

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.55  E-value=0.083  Score=45.82  Aligned_cols=74  Identities=24%  Similarity=0.252  Sum_probs=53.0

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|.. +.       .+..+.+.     ..|+||-|+..+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~-----~~Dvvi~~vp~~   67 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGEQ-VV-------SSPADVAE-----KADRIITMLPTS   67 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTCE-EC-------SSHHHHHH-----HCSEEEECCSSH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCe-ec-------CCHHHHHh-----cCCEEEEeCCCH
Confidence            58899999999999988888898 899999999988888776642 11       12233332     378888888655


Q ss_pred             HHHHHHHH
Q 020435          222 SLVQEAYA  229 (326)
Q Consensus       222 ~~~~~~~~  229 (326)
                      ......+.
T Consensus        68 ~~~~~v~~   75 (296)
T 2gf2_A           68 INAIEAYS   75 (296)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            43555444

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.55  E-value=0.027  Score=48.30  Aligned_cols=78  Identities=15%  Similarity=0.267  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCChhH-HHHH-HhcCCc-EEE--cCCCCCCccHHHHHH---Hhc
Q 020435          139 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEK-FEIG-KRFGVT-EFV--NSKNCGDKSVSQIII---DMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~~~-~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~---~~~  207 (326)
                      .+.++||+|+   |++|.++++.+...|+ +|+++++++++ .+.+ .+++.. ..+  |..+  .+++.+.+.   +..
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN--EEHLASLAGRVTEAI   82 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4678999984   7999999999999999 89999988765 2433 344421 222  3222  122222222   222


Q ss_pred             C--CCccEEEEcCC
Q 020435          208 D--GGADYCFECVG  219 (326)
Q Consensus       208 ~--~g~d~v~d~~g  219 (326)
                      +  +++|++++++|
T Consensus        83 g~~~~iD~lv~nAg   96 (269)
T 2h7i_A           83 GAGNKLDGVVHSIG   96 (269)
T ss_dssp             CTTCCEEEEEECCC
T ss_pred             CCCCCceEEEECCc
Confidence            2  17999999887

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.54  E-value=0.015  Score=51.93  Aligned_cols=75  Identities=15%  Similarity=0.143  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc----CCcEEEcCCCCCCccHHHHHHHhcCC-Cc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVTEFVNSKNCGDKSVSQIIIDMTDG-GA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~----g~~~vi~~~~~~~~~~~~~i~~~~~~-g~  211 (326)
                      .+.+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+. .+    ++ +++..+- .+.   +.+.+...+ ++
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~Dl-~d~---~~~~~~~~~~~~   81 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGM-QSEIGDI-RDQ---NKLLESIREFQP   81 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTS-EEEECCT-TCH---HHHHHHHHHHCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcccchhhHhhccCCce-EEEEccc-cCH---HHHHHHHHhcCC
Confidence            3679999997 9999999999988998 9999998765433221 11    22 2332221 112   233333333 69


Q ss_pred             cEEEEcCC
Q 020435          212 DYCFECVG  219 (326)
Q Consensus       212 d~v~d~~g  219 (326)
                      |+||++++
T Consensus        82 d~vih~A~   89 (357)
T 1rkx_A           82 EIVFHMAA   89 (357)
T ss_dssp             SEEEECCS
T ss_pred             CEEEECCC
Confidence            99999988

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=95.54  E-value=0.02  Score=55.52  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=46.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC---------ChhHHH----HHHhcCCcEEEcCCCCCCccHHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV---------ISEKFE----IGKRFGVTEFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~---------~~~~~~----~~~~~g~~~vi~~~~~~~~~~~~~i~  204 (326)
                      .+.++||+|+ ++||.++++.+...|+ +|+++++         +.++.+    .++..+...+.|..+  ..+..+.+.
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d--~~~~~~~~~   94 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNS--VIDGAKVIE   94 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCEEECCCC--GGGHHHHHC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCC--HHHHHHHHH
Confidence            4788999987 8999999999999999 9999876         444333    234455555555544  233333333


Q ss_pred             HhcCC--CccEEEEcCCc
Q 020435          205 DMTDG--GADYCFECVGL  220 (326)
Q Consensus       205 ~~~~~--g~d~v~d~~g~  220 (326)
                      +....  ++|++++++|.
T Consensus        95 ~~~~~~g~iDiLVnnAGi  112 (613)
T 3oml_A           95 TAIKAFGRVDILVNNAGI  112 (613)
T ss_dssp             ----------CEECCCCC
T ss_pred             HHHHHCCCCcEEEECCCC
Confidence            33322  89999998884

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.53  E-value=0.11  Score=42.69  Aligned_cols=99  Identities=16%  Similarity=0.118  Sum_probs=66.1

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC--cEEEcCCCCCCccHHHHHHHhcC
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      +.......++.+||-+|+|. |..+..+++. +. +|++++.+++..+.+++.-.  -.++..+-   .++.     . .
T Consensus        37 ~l~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~---~~~~-----~-~  104 (220)
T 3hnr_A           37 ILEDVVNKSFGNVLEFGVGT-GNLTNKLLLA-GR-TVYGIEPSREMRMIAKEKLPKEFSITEGDF---LSFE-----V-P  104 (220)
T ss_dssp             HHHHHHHTCCSEEEEECCTT-SHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHSCTTCCEESCCS---SSCC-----C-C
T ss_pred             HHHHhhccCCCeEEEeCCCC-CHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHhCCCceEEEeCCh---hhcC-----C-C
Confidence            44555566889999998865 6666666665 77 99999999998888776421  12332222   1110     0 1


Q ss_pred             CCccEEEEcCC-----cHH---HHHHHHHHhhcCCcEEEEec
Q 020435          209 GGADYCFECVG-----LAS---LVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       209 ~g~d~v~d~~g-----~~~---~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +.+|+|+....     .+.   .+..+.+.|+++ |.++...
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  145 (220)
T 3hnr_A          105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG-GKIVFAD  145 (220)
T ss_dssp             SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            37999986432     121   578899999998 9998875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.52  E-value=0.11  Score=46.57  Aligned_cols=90  Identities=17%  Similarity=0.195  Sum_probs=59.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+..     .   .+..+.+...  ..+|+||-|+.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~-----~---~s~~e~~~~a--~~~DvVi~~vp   90 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAG-----A---RSIEEFCAKL--VKPRVVWLMVP   90 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBC-----C---SSHHHHHHHS--CSSCEEEECSC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEE-----e---CCHHHHHhcC--CCCCEEEEeCC
Confidence            4689999999999999999988998 9999999999988887766421     1   2333333331  13478877777


Q ss_pred             cHHHHHHHHH----HhhcCCcEEEEec
Q 020435          220 LASLVQEAYA----CCRKGWGKTIVLG  242 (326)
Q Consensus       220 ~~~~~~~~~~----~l~~~~G~~v~~g  242 (326)
                      ... ....+.    .++++ ..++..+
T Consensus        91 ~~~-v~~vl~~l~~~l~~g-~iiId~s  115 (358)
T 4e21_A           91 AAV-VDSMLQRMTPLLAAN-DIVIDGG  115 (358)
T ss_dssp             GGG-HHHHHHHHGGGCCTT-CEEEECS
T ss_pred             HHH-HHHHHHHHHhhCCCC-CEEEeCC
Confidence            653 333333    33444 4444444

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=95.52  E-value=0.078  Score=49.34  Aligned_cols=100  Identities=13%  Similarity=0.137  Sum_probs=64.6

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCc-EEEcCCCCCCccHHHHHHHh
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ....++++++||=.|+|+ |..++++|+.++ ...|++++.++++.+.+++    +|.. .++.      .+..+ +...
T Consensus        95 ~~L~~~~g~~VLDlgaGp-G~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~------~Da~~-l~~~  166 (464)
T 3m6w_A           95 VLLDPKPGERVLDLAAAP-GGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQ------APPRA-LAEA  166 (464)
T ss_dssp             HHHCCCTTCEEEESSCTT-CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEEC------SCHHH-HHHH
T ss_pred             HhcCcCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEE------CCHHH-hhhh
Confidence            345678899999888755 555666776653 2389999999998877653    5654 2222      22222 2222


Q ss_pred             cCCCccEEE-E--cCCc-------------------------HHHHHHHHHHhhcCCcEEEEe
Q 020435          207 TDGGADYCF-E--CVGL-------------------------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       207 ~~~g~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ..+.||.|+ |  |.|.                         ..++..+++.|+++ |+++..
T Consensus       167 ~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~Lvys  228 (464)
T 3m6w_A          167 FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPG-GVLVYS  228 (464)
T ss_dssp             HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred             ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEE
Confidence            244899998 4  3321                         23467788899998 988754

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.52  E-value=0.061  Score=47.78  Aligned_cols=94  Identities=18%  Similarity=0.092  Sum_probs=59.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh----hHHHHH---HhcCCcEEEcCCCCCCccHHHHHHHhcCC-C
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIG---KRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G  210 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~----~~~~~~---~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g  210 (326)
                      ..+|||+|+ |.+|..+++.+...|. +|+++++++    ++.+.+   ...++. ++..+-   .+ .+.+.+.... +
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~l~~~~v~-~~~~Dl---~d-~~~l~~~~~~~~   83 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR-PTYILARPGPRSPSKAKIFKALEDKGAI-IVYGLI---NE-QEAMEKILKEHE   83 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSSCCCHHHHHHHHHHHHTTCE-EEECCT---TC-HHHHHHHHHHTT
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCCCCChhHHHHHHHHHhCCcE-EEEeec---CC-HHHHHHHHhhCC
Confidence            358999998 9999999999988897 899999876    444433   334554 332222   11 2233333333 7


Q ss_pred             ccEEEEcCCcHH--HHHHHHHHhhcCCc---EEEE
Q 020435          211 ADYCFECVGLAS--LVQEAYACCRKGWG---KTIV  240 (326)
Q Consensus       211 ~d~v~d~~g~~~--~~~~~~~~l~~~~G---~~v~  240 (326)
                      +|+||.+++...  ....+++.++.. |   +++.
T Consensus        84 ~d~Vi~~a~~~n~~~~~~l~~aa~~~-g~v~~~v~  117 (346)
T 3i6i_A           84 IDIVVSTVGGESILDQIALVKAMKAV-GTIKRFLP  117 (346)
T ss_dssp             CCEEEECCCGGGGGGHHHHHHHHHHH-CCCSEEEC
T ss_pred             CCEEEECCchhhHHHHHHHHHHHHHc-CCceEEee
Confidence            999999998632  234555666554 4   5653

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.52  E-value=0.022  Score=48.35  Aligned_cols=82  Identities=17%  Similarity=0.124  Sum_probs=48.6

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEc-CChhHHH----HHHhcCCc-EEEcCCCCCCccHHHHHHHhcC--
Q 020435          138 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFE----IGKRFGVT-EFVNSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~-~~~~~~~----~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~--  208 (326)
                      .++++|||+|+ |++|.++++.+...|+ +|++++ ++.++.+    .++..+.+ ..+..+-.+.+++.+.+.+...  
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEV   89 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhc
Confidence            46789999987 9999999999999999 888877 4443322    23334432 2222211011223333333221  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        90 g~id~lv~~Ag~  101 (256)
T 3ezl_A           90 GEIDVLVNNAGI  101 (256)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            389999998884

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.51  E-value=0.034  Score=46.50  Aligned_cols=71  Identities=15%  Similarity=0.251  Sum_probs=46.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEE--cCCCCCCccHHHHHHHhc-CCCccEEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV--NSKNCGDKSVSQIIIDMT-DGGADYCF  215 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~-~~g~d~v~  215 (326)
                      +.++||+|+ |.+|..+++.+...|+ +|++++++++ .   .++   ..+  |..+  .+++.+.+.+.. .+++|+++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~-~---~~~---~~~~~D~~~--~~~~~~~~~~~~~~~~~d~li   71 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE-G---EDL---IYVEGDVTR--EEDVRRAVARAQEEAPLFAVV   71 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC-S---SSS---EEEECCTTC--HHHHHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccCcc-c---cce---EEEeCCCCC--HHHHHHHHHHHHhhCCceEEE
Confidence            568999987 9999999998888899 9999998765 1   111   222  2222  123333333331 12799999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      ++++.
T Consensus        72 ~~ag~   76 (242)
T 1uay_A           72 SAAGV   76 (242)
T ss_dssp             ECCCC
T ss_pred             Ecccc
Confidence            98873

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=95.50  E-value=0.01  Score=52.68  Aligned_cols=78  Identities=22%  Similarity=0.213  Sum_probs=47.3

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHH----HHHHhc------CCc-EEE--cCCCCCCccHHHHHHH
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF----EIGKRF------GVT-EFV--NSKNCGDKSVSQIIID  205 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~----~~~~~~------g~~-~vi--~~~~~~~~~~~~~i~~  205 (326)
                      +.+|||+|+ |++|.++++.+...|+ +|+.+.++.++.    +.++..      +.. .++  |..+  .+++.+.+.+
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~-~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~   78 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD--SKSVAAARER   78 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC--HHHHHHHHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCC--HHHHHHHHHH
Confidence            568899987 8999999999999998 777766543322    222221      121 222  2222  1233334444


Q ss_pred             hcCCCccEEEEcCCc
Q 020435          206 MTDGGADYCFECVGL  220 (326)
Q Consensus       206 ~~~~g~d~v~d~~g~  220 (326)
                      ...+++|++|+++|.
T Consensus        79 ~~~g~iD~lVnnAG~   93 (327)
T 1jtv_A           79 VTEGRVDVLVCNAGL   93 (327)
T ss_dssp             CTTSCCSEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence            433489999998873

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.50  E-value=0.041  Score=49.58  Aligned_cols=87  Identities=26%  Similarity=0.372  Sum_probs=59.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.+++. +.+.+...|+..         .++.+.+.     ..|+|+-+.
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~~~---------~~l~ell~-----~aDvV~l~~  238 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGVEP---------ASLEDVLT-----KSDFIFVVA  238 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTCEE---------CCHHHHHH-----SCSEEEECS
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCeee---------CCHHHHHh-----cCCEEEEcC
Confidence            37899999999999999999999999 999999875 334445566531         12322222     478887655


Q ss_pred             CcH-H----HHHHHHHHhhcCCcEEEEec
Q 020435          219 GLA-S----LVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       219 g~~-~----~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ... .    .-...+..++++ ..+|.++
T Consensus       239 Plt~~T~~li~~~~l~~mk~g-ailIN~a  266 (365)
T 4hy3_A          239 AVTSENKRFLGAEAFSSMRRG-AAFILLS  266 (365)
T ss_dssp             CSSCC---CCCHHHHHTSCTT-CEEEECS
T ss_pred             cCCHHHHhhcCHHHHhcCCCC-cEEEECc
Confidence            432 1    113556777886 7777776

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.49  E-value=0.0079  Score=50.24  Aligned_cols=95  Identities=13%  Similarity=0.096  Sum_probs=66.6

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC-CcEEEcCCCCCCccHHHHHHHhc-CCCccEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDMT-DGGADYC  214 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~~i~~~~-~~g~d~v  214 (326)
                      +.++.+||-+|+|. |..+..+++. +. +|++++.+++..+.+++.. ...++..+-.  ..+     ... .+.+|+|
T Consensus        46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~--~~~-----~~~~~~~fD~v  115 (226)
T 3m33_A           46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNGK--GEL-----PAGLGAPFGLI  115 (226)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCSC--SSC-----CTTCCCCEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcchh--hcc-----CCcCCCCEEEE
Confidence            36789999999865 6677777776 77 9999999999988887642 2233322210  000     111 2389999


Q ss_pred             EEcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          215 FECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       215 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +....-...+..+.+.|+++ |.++..+
T Consensus       116 ~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  142 (226)
T 3m33_A          116 VSRRGPTSVILRLPELAAPD-AHFLYVG  142 (226)
T ss_dssp             EEESCCSGGGGGHHHHEEEE-EEEEEEE
T ss_pred             EeCCCHHHHHHHHHHHcCCC-cEEEEeC
Confidence            98766666688999999998 9999443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.49  E-value=0.11  Score=44.65  Aligned_cols=90  Identities=19%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCC-EEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcCC-CccEEEEc
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDG-GADYCFEC  217 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~-~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~  217 (326)
                      .+|.|+|+|.+|.+.++.++..|.. +|++.++++++.+.+++.|.. ...+       +..+.+     . ++|+||.|
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~-------~~~~~~-----~~~aDvVila   69 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTT-------SIAKVE-----DFSPDFVMLS   69 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEES-------CGGGGG-----GTCCSEEEEC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccC-------CHHHHh-----cCCCCEEEEc
Confidence            3789999999999999988887742 699999999998888888763 1221       111111     2 58999999


Q ss_pred             CCcHHHH---HHHHHHhhcCCcEEEEecc
Q 020435          218 VGLASLV---QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       218 ~g~~~~~---~~~~~~l~~~~G~~v~~g~  243 (326)
                      +......   ......++++ ..++.++.
T Consensus        70 vp~~~~~~v~~~l~~~l~~~-~iv~~~~~   97 (281)
T 2g5c_A           70 SPVRTFREIAKKLSYILSED-ATVTDQGS   97 (281)
T ss_dssp             SCHHHHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred             CCHHHHHHHHHHHHhhCCCC-cEEEECCC
Confidence            9876522   2233445665 65665543

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.47  E-value=0.045  Score=48.99  Aligned_cols=89  Identities=22%  Similarity=0.316  Sum_probs=60.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..+++.++..|. +|++.+++.++. ..+..|++.+        .++.+.+.     ..|+|+-+.
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~~--------~~l~ell~-----~aDvV~l~~  231 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV--------STLQDLLF-----HSDCVTLHC  231 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC--------SSHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcchh-hHhhcCCeec--------CCHHHHHh-----cCCEEEEcC
Confidence            47899999999999999999999999 999998765542 2344565321        12333332     378888766


Q ss_pred             CcH-H---HH-HHHHHHhhcCCcEEEEecc
Q 020435          219 GLA-S---LV-QEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~~-~---~~-~~~~~~l~~~~G~~v~~g~  243 (326)
                      ... .   .+ ...+..++++ ..+|.++.
T Consensus       232 P~t~~t~~li~~~~l~~mk~g-ailIN~ar  260 (347)
T 1mx3_A          232 GLNEHNHHLINDFTVKQMRQG-AFLVNTAR  260 (347)
T ss_dssp             CCCTTCTTSBSHHHHTTSCTT-EEEEECSC
T ss_pred             CCCHHHHHHhHHHHHhcCCCC-CEEEECCC
Confidence            532 1   12 4556677886 77777764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.47  E-value=0.039  Score=46.13  Aligned_cols=101  Identities=16%  Similarity=0.242  Sum_probs=66.5

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc---EEEcCCCCCCccHHHHHHHhc
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT---EFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~---~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      +.......++.+||-+|+|. |..+..+++. |..+|++++.+++..+.+++....   .++..+-   .++     ...
T Consensus        35 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~-----~~~  104 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADL---DKL-----HLP  104 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCG---GGC-----CCC
T ss_pred             HHHhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcCh---hhc-----cCC
Confidence            44555566889999998865 6666667665 544899999999998888764321   2222111   110     011


Q ss_pred             CCCccEEEEcCCc------HHHHHHHHHHhhcCCcEEEEec
Q 020435          208 DGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ~~g~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+.+|+|+....-      ...+..+.+.|+++ |.++...
T Consensus       105 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~  144 (243)
T 3bkw_A          105 QDSFDLAYSSLALHYVEDVARLFRTVHQALSPG-GHFVFST  144 (243)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCceEEEEeccccccchHHHHHHHHHHhcCcC-cEEEEEe
Confidence            2379999864331      34577889999998 9988764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.46  E-value=0.025  Score=48.84  Aligned_cols=93  Identities=14%  Similarity=0.254  Sum_probs=59.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      ..+|||+|+|.+|..+++.+...|. +|+++++++++.    ..+...+ .|..+   .+   .+.+...+.+|+||+++
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----~~~~~~~~~Dl~d---~~---~~~~~~~~~~d~vih~a   71 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQPM----PAGVQTLIADVTR---PD---TLASIVHLRPEILVYCV   71 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTSCC----CTTCCEEECCTTC---GG---GCTTGGGGCCSEEEECH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcccc----ccCCceEEccCCC---hH---HHHHhhcCCCCEEEEeC
Confidence            4689999999999999999998998 999999887652    1233222 12222   21   22223333599999988


Q ss_pred             CcH------------HHHHHHHHHhhcC-CcEEEEecc
Q 020435          219 GLA------------SLVQEAYACCRKG-WGKTIVLGV  243 (326)
Q Consensus       219 g~~------------~~~~~~~~~l~~~-~G~~v~~g~  243 (326)
                      +..            .....+++.+... -+++|.++.
T Consensus        72 ~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS  109 (286)
T 3gpi_A           72 AASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSS  109 (286)
T ss_dssp             HHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence            642            1244556666543 147887764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.46  E-value=0.07  Score=44.16  Aligned_cols=96  Identities=20%  Similarity=0.325  Sum_probs=64.6

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc----CC-------cEEEcCCCCCCccHHHHHHH
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GV-------TEFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~----g~-------~~vi~~~~~~~~~~~~~i~~  205 (326)
                      ++++.+||-+|+|. |..+..+++. +. +|++++.+++..+.+++.    +.       -.++..+.   ..+     .
T Consensus        28 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~---~~~-----~   96 (235)
T 3sm3_A           28 LQEDDEILDIGCGS-GKISLELASK-GY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA---SSL-----S   96 (235)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT---TSC-----C
T ss_pred             CCCCCeEEEECCCC-CHHHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc---ccc-----C
Confidence            45789999999875 6777777776 77 999999999988887652    22       12222221   111     0


Q ss_pred             hcCCCccEEEEcCC-----c-H---HHHHHHHHHhhcCCcEEEEeccC
Q 020435          206 MTDGGADYCFECVG-----L-A---SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       206 ~~~~g~d~v~d~~g-----~-~---~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ...+.+|+|+....     . .   ..++.+.+.|+++ |.++.....
T Consensus        97 ~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  143 (235)
T 3sm3_A           97 FHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPG-AYLYLVEFG  143 (235)
T ss_dssp             SCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEE-EEEEEEEEB
T ss_pred             CCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCC-eEEEEEECC
Confidence            11237999985322     2 2   4578889999998 999887653

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.45  E-value=0.034  Score=49.13  Aligned_cols=73  Identities=14%  Similarity=0.118  Sum_probs=48.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+...++. ++..+-   .+ .+.+.+... ++|+||++++
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~~~~~~-~~~~Dl---~d-~~~~~~~~~-~~d~vih~a~   86 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLAYLEPE-CRVAEM---LD-HAGLERALR-GLDGVIFSAG   86 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGGGGCCE-EEECCT---TC-HHHHHHHTT-TCSEEEEC--
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhccCCeE-EEEecC---CC-HHHHHHHHc-CCCEEEECCc
Confidence            48999997 9999999999988998 999999987765444433443 232221   11 233444443 6999999987


Q ss_pred             c
Q 020435          220 L  220 (326)
Q Consensus       220 ~  220 (326)
                      .
T Consensus        87 ~   87 (342)
T 2x4g_A           87 Y   87 (342)
T ss_dssp             -
T ss_pred             c
Confidence            4

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=95.44  E-value=0.011  Score=50.73  Aligned_cols=95  Identities=20%  Similarity=0.254  Sum_probs=64.7

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHc---CCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHHh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLC---GATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~---g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ++++.+||-+|+|. |..+..+++..   |+ +|++++.+++..+.+++    .+..   .++..+-          .++
T Consensus        68 ~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~----------~~~  135 (261)
T 4gek_A           68 VQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI----------RDI  135 (261)
T ss_dssp             CCTTCEEEEETCTT-THHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCT----------TTC
T ss_pred             CCCCCEEEEEeCCC-CHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEeeccc----------ccc
Confidence            78999999999875 77777788764   66 89999999998887764    2321   2222221          112


Q ss_pred             cCCCccEEEEcCCc--------HHHHHHHHHHhhcCCcEEEEeccC
Q 020435          207 TDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       207 ~~~g~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ..+.+|+|+....-        ...++.+.+.|+|+ |.+++....
T Consensus       136 ~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG-G~lii~e~~  180 (261)
T 4gek_A          136 AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSEKF  180 (261)
T ss_dssp             CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEB
T ss_pred             cccccccceeeeeeeecCchhHhHHHHHHHHHcCCC-cEEEEEecc
Confidence            12368888754321        13578889999998 999987543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=95.43  E-value=0.071  Score=43.95  Aligned_cols=100  Identities=14%  Similarity=0.130  Sum_probs=62.2

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH----HHhcCCcEEEcCCCCCCccHHHHHHHhcCCC
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGG  210 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~----~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g  210 (326)
                      ..++++++||=.|+|+ |..+..+++..+..+|++++.+++..+.    ++....-..+..+.   ..... ... ..+.
T Consensus        53 ~~~~~g~~VLDlGcGt-G~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~---~~~~~-~~~-~~~~  126 (210)
T 1nt2_A           53 LKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPWK-YSG-IVEK  126 (210)
T ss_dssp             CCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGGG-TTT-TCCC
T ss_pred             cCCCCCCEEEEECCcC-CHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCC---CCchh-hcc-cccc
Confidence            5678899999999875 6677778887753389999999875432    33332112222221   11100 001 1237


Q ss_pred             ccEEEEcCCcHH----HHHHHHHHhhcCCcEEEEe
Q 020435          211 ADYCFECVGLAS----LVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       211 ~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~  241 (326)
                      +|+|+.....+.    .+..+.+.|+++ |+++..
T Consensus       127 fD~V~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~i~  160 (210)
T 1nt2_A          127 VDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIM  160 (210)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             eeEEEEeccChhHHHHHHHHHHHHhCCC-CEEEEE
Confidence            999986544321    257788999998 999877

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=95.42  E-value=0.074  Score=45.84  Aligned_cols=90  Identities=11%  Similarity=0.125  Sum_probs=61.3

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      ...+.++||+|+|++|.+++..+...|+.+|+++.|+.++.+. ++.++.+ .. . +   ..         ...+|+|+
T Consensus       116 ~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~~-~-~---~~---------~~~~DivI  180 (271)
T 1npy_A          116 LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-YI-N-S---LE---------NQQADILV  180 (271)
T ss_dssp             CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-EE-S-C---CT---------TCCCSEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-cc-h-h---hh---------cccCCEEE
Confidence            3456799999999999999998888998789999999887654 4556642 11 1 1   00         02699999


Q ss_pred             EcCCcHHHH-------HHHHHHhhcCCcEEEEec
Q 020435          216 ECVGLASLV-------QEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       216 d~~g~~~~~-------~~~~~~l~~~~G~~v~~g  242 (326)
                      +|.+.....       ......+.++ ..++.+.
T Consensus       181 naTp~gm~~~~~~~~~~~~~~~l~~~-~~v~Dlv  213 (271)
T 1npy_A          181 NVTSIGMKGGKEEMDLAFPKAFIDNA-SVAFDVV  213 (271)
T ss_dssp             ECSSTTCTTSTTTTSCSSCHHHHHHC-SEEEECC
T ss_pred             ECCCCCccCccccCCCCCCHHHcCCC-CEEEEee
Confidence            998864310       1113456776 6666664

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.42  E-value=0.056  Score=46.93  Aligned_cols=92  Identities=14%  Similarity=0.174  Sum_probs=58.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh-------hHHHHHH---hcCCcEEE-cCCCCCCccHHHHHHHhc
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-------EKFEIGK---RFGVTEFV-NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~-------~~~~~~~---~~g~~~vi-~~~~~~~~~~~~~i~~~~  207 (326)
                      ..+|||+|+ |.+|..+++.+...|. +|+++++++       ++.+.++   ..++..+. |..+      .+.+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d------~~~l~~~~   74 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND------HETLVKAI   74 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC------HHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC------HHHHHHHH
Confidence            467999997 9999999998888898 899999886       4444332   34554322 2222      23344433


Q ss_pred             CCCccEEEEcCCcH--HHHHHHHHHhhcC--CcEEE
Q 020435          208 DGGADYCFECVGLA--SLVQEAYACCRKG--WGKTI  239 (326)
Q Consensus       208 ~~g~d~v~d~~g~~--~~~~~~~~~l~~~--~G~~v  239 (326)
                      . ++|+||++++..  .....+++.++..  -.+++
T Consensus        75 ~-~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           75 K-QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             T-TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             h-CCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence            3 699999998852  2234455555543  03666

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.42  E-value=0.041  Score=46.50  Aligned_cols=98  Identities=16%  Similarity=0.204  Sum_probs=68.2

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHHhc
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ..+.++++||-+|+|. |..+..+++..+. +|++++.+++..+.+++    .|..   .++..+-   .++     ...
T Consensus        42 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~-----~~~  111 (257)
T 3f4k_A           42 NELTDDAKIADIGCGT-GGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM---DNL-----PFQ  111 (257)
T ss_dssp             CCCCTTCEEEEETCTT-SHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC-----SSC
T ss_pred             hcCCCCCeEEEeCCCC-CHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhC-----CCC
Confidence            4678899999999876 8888889998887 99999999988877654    3421   2332221   111     011


Q ss_pred             CCCccEEEEc-----CCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          208 DGGADYCFEC-----VGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       208 ~~g~d~v~d~-----~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+.+|+|+..     .+-...+..+.+.|+++ |.++....
T Consensus       112 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~~  151 (257)
T 3f4k_A          112 NEELDLIWSEGAIYNIGFERGMNEWSKYLKKG-GFIAVSEA  151 (257)
T ss_dssp             TTCEEEEEEESCSCCCCHHHHHHHHHTTEEEE-EEEEEEEE
T ss_pred             CCCEEEEEecChHhhcCHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            2389999742     23345678889999998 99988753

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=95.41  E-value=0.032  Score=47.44  Aligned_cols=97  Identities=13%  Similarity=0.116  Sum_probs=63.0

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHHH--hcC
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIID--MTD  208 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~--~~~  208 (326)
                      ..++.+||=+|+|+ |..++.+++..+..+|++++.+++..+.+++    +|..  .++..      +..+ +..  ...
T Consensus        78 ~~~~~~vLDiG~G~-G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~------d~~~-~~~~~~~~  149 (249)
T 3g89_A           78 WQGPLRVLDLGTGA-GFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWG------RAEV-LAREAGHR  149 (249)
T ss_dssp             CCSSCEEEEETCTT-TTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEEC------CHHH-HTTSTTTT
T ss_pred             cCCCCEEEEEcCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEEC------cHHH-hhcccccC
Confidence            35688999998764 6666677776543399999999998887754    4543  23322      2222 211  112


Q ss_pred             CCccEEEEc-CCc-HHHHHHHHHHhhcCCcEEEEec
Q 020435          209 GGADYCFEC-VGL-ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       209 ~g~d~v~d~-~g~-~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +.||+|+.. +.. ...+..+.+.|+++ |+++.+-
T Consensus       150 ~~fD~I~s~a~~~~~~ll~~~~~~Lkpg-G~l~~~~  184 (249)
T 3g89_A          150 EAYARAVARAVAPLCVLSELLLPFLEVG-GAAVAMK  184 (249)
T ss_dssp             TCEEEEEEESSCCHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             CCceEEEECCcCCHHHHHHHHHHHcCCC-eEEEEEe
Confidence            389999853 332 34466778899998 9998764

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=95.41  E-value=0.1  Score=46.12  Aligned_cols=128  Identities=16%  Similarity=0.216  Sum_probs=74.8

Q ss_pred             EEEEEccCHHHHHH-HHHHHHcCCCEEE-EEcCChhHHHH-HHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          142 TVVIFGLGSIGLAV-AEGARLCGATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       142 ~vlI~Gag~~G~~a-~~la~~~g~~~V~-~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      +|.|+|+|.+|... +..++..+. +++ +.++++++.+. .+++|...+.       .++.+.+.   ...+|+|+.|.
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~-~~vav~d~~~~~~~~~~~~~g~~~~~-------~~~~~~l~---~~~~D~V~i~t   70 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGG-EVVSMMSTSAERGAAYATENGIGKSV-------TSVEELVG---DPDVDAVYVST   70 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTC-EEEEEECSCHHHHHHHHHHTTCSCCB-------SCHHHHHT---CTTCCEEEECS
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCC-eEEEEECCCHHHHHHHHHHcCCCccc-------CCHHHHhc---CCCCCEEEEeC
Confidence            68899999999876 544333777 665 55677777654 4556753222       23333221   12799999999


Q ss_pred             CcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHH---HHH----hcCCEE-EeeeccCCCCCCCHHHHHHHHhCCCC
Q 020435          219 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF---EVL----HSGKIL-MGSLFGGLKAKSDIPILLKRYMDKEL  290 (326)
Q Consensus       219 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~~----~~~~~i-~~~~~~~~~~~~~~~~~~~l~~~g~~  290 (326)
                      ........+..++..+  +-+++...     +..+..   .+.    .+++.+ .+..   ......++.+.+++++|.+
T Consensus        71 p~~~h~~~~~~al~~G--k~v~~ekP-----~~~~~~~~~~l~~~a~~~g~~~~~~~~---~r~~p~~~~~~~~i~~g~i  140 (332)
T 2glx_A           71 TNELHREQTLAAIRAG--KHVLCEKP-----LAMTLEDAREMVVAAREAGVVLGTNHH---LRNAAAHRAMRDAIAEGRI  140 (332)
T ss_dssp             CGGGHHHHHHHHHHTT--CEEEECSS-----SCSSHHHHHHHHHHHHHHTCCEEECCC---GGGSHHHHHHHHHHHTTTT
T ss_pred             ChhHhHHHHHHHHHCC--CeEEEeCC-----CcCCHHHHHHHHHHHHHcCCEEEEeeh---hhcCHHHHHHHHHHHcCCC
Confidence            9877677778888874  55555432     222221   111    123333 3221   1223457888888988865

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.40  E-value=0.015  Score=48.76  Aligned_cols=100  Identities=12%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC---cEEEcCCCCCCccHHHHHHHhcCCCccE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV---TEFVNSKNCGDKSVSQIIIDMTDGGADY  213 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~---~~vi~~~~~~~~~~~~~i~~~~~~g~d~  213 (326)
                      .+++.+||-+|+|. |..+..+++.... +|++++.+++..+.+++...   ..+-.. .   .++.+.+..+..+.+|+
T Consensus        58 ~~~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~-~---~d~~~~~~~~~~~~fD~  131 (236)
T 1zx0_A           58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPL-K---GLWEDVAPTLPDGHFDG  131 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEE-E---SCHHHHGGGSCTTCEEE
T ss_pred             CCCCCeEEEEeccC-CHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEE-e---cCHHHhhcccCCCceEE
Confidence            46788999999864 6666666554444 89999999998887765221   122111 1   23333222233348999


Q ss_pred             EEE-cCC----cH------HHHHHHHHHhhcCCcEEEEecc
Q 020435          214 CFE-CVG----LA------SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       214 v~d-~~g----~~------~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      |+. +..    ..      ..+..+.+.|+++ |.++.+..
T Consensus       132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~  171 (236)
T 1zx0_A          132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCNL  171 (236)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECCH
T ss_pred             EEECCcccchhhhhhhhHHHHHHHHHHhcCCC-eEEEEEec
Confidence            987 322    11      2367889999998 99987643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.39  E-value=0.042  Score=44.85  Aligned_cols=96  Identities=15%  Similarity=0.145  Sum_probs=64.3

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC----cEEEcCCCCCCccHHHHHHHhcCCCcc
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----TEFVNSKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~----~~vi~~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      +.++.+||.+|+|. |..+..+++. |..+|++++.+++..+.+++...    -.++..+-   .++     ....+.+|
T Consensus        40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~---~~~-----~~~~~~fD  109 (215)
T 2pxx_A           40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV---RKL-----DFPSASFD  109 (215)
T ss_dssp             CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT---TSC-----CSCSSCEE
T ss_pred             cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch---hcC-----CCCCCccc
Confidence            47789999999876 7777777776 43389999999999888776321    12332222   111     12223799


Q ss_pred             EEEEcCC---------------------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          213 YCFECVG---------------------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       213 ~v~d~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +|+....                     ....+..+.+.|+++ |.++....
T Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~  160 (215)
T 2pxx_A          110 VVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG-GRFISMTS  160 (215)
T ss_dssp             EEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             EEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC-CEEEEEeC
Confidence            9996321                     134577888999998 99988764

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.39  E-value=0.073  Score=46.68  Aligned_cols=97  Identities=13%  Similarity=0.166  Sum_probs=64.1

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc---------CC-cEEEcCCCCCCccHHHHHHHh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF---------GV-TEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~---------g~-~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ...+.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.         .. -.++.      .+..+.+.. 
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~------~Da~~~l~~-  164 (304)
T 2o07_A           93 HPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV------GDGFEFMKQ-  164 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHT-
T ss_pred             CCCCCEEEEECCCc-hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE------CcHHHHHhh-
Confidence            35678999998765 66667777765544999999999888877652         11 12332      223333332 


Q ss_pred             cCCCccEEE-EcCC---------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          207 TDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       207 ~~~g~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ..+.+|+|+ |...         ....++.+.+.|+++ |.++...
T Consensus       165 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  209 (304)
T 2o07_A          165 NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG  209 (304)
T ss_dssp             CSSCEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCC-eEEEEec
Confidence            334899998 5433         123588899999998 9998764

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=95.38  E-value=0.045  Score=49.77  Aligned_cols=82  Identities=21%  Similarity=0.281  Sum_probs=50.0

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHH-cCCCEEEEEcCChhH----------------HHHHHhcCCc-EEEcCCCCCCcc
Q 020435          138 EVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEK----------------FEIGKRFGVT-EFVNSKNCGDKS  198 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~a~~la~~-~g~~~V~~~~~~~~~----------------~~~~~~~g~~-~vi~~~~~~~~~  198 (326)
                      ..++++||+|+ +++|+++++.+.. .|+ +|++++++.+.                .+.+++.|.. ..+.-+-.+.+.
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~  123 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI  123 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence            45678889987 8999998888887 999 89988765432                1234455643 223222111222


Q ss_pred             HHHHHHHhcC--CCccEEEEcCCc
Q 020435          199 VSQIIIDMTD--GGADYCFECVGL  220 (326)
Q Consensus       199 ~~~~i~~~~~--~g~d~v~d~~g~  220 (326)
                      ..+.+.+...  |++|++++++|.
T Consensus       124 v~~~v~~i~~~~G~IDiLVNNAG~  147 (405)
T 3zu3_A          124 KQLTIDAIKQDLGQVDQVIYSLAS  147 (405)
T ss_dssp             HHHHHHHHHHHTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEEcCcc
Confidence            3223332221  489999998875

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.36  E-value=0.048  Score=48.76  Aligned_cols=36  Identities=22%  Similarity=0.243  Sum_probs=31.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHH--cCCCEEEEEcCChh
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARL--CGATRIIGVDVISE  175 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~--~g~~~V~~~~~~~~  175 (326)
                      .+.+|||+|+ |.+|..+++.+..  .|. +|++++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCc
Confidence            4679999987 9999999998888  898 9999998654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=95.36  E-value=0.034  Score=47.01  Aligned_cols=101  Identities=15%  Similarity=0.036  Sum_probs=68.7

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHhcC-CcEEEcCCCCCCccHHHHHHHhcC
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      +.......++.+||-+|+|. |..+..+++.. +. +|++++.+++..+.+++.. .-.++..+-   .++      ...
T Consensus        25 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~~------~~~   93 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGP-GNSTELLTDRYGVN-VITGIDSDDDMLEKAADRLPNTNFGKADL---ATW------KPA   93 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTT-THHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHSTTSEEEECCT---TTC------CCS
T ss_pred             HHHhcCCCCCCEEEEecCcC-CHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhCCCcEEEECCh---hhc------Ccc
Confidence            45556677889999999874 77777777765 55 8999999999988887642 122332222   111      012


Q ss_pred             CCccEEEEcCC------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          209 GGADYCFECVG------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       209 ~g~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.+|+|+....      -...+..+.+.|+++ |.++....
T Consensus        94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  133 (259)
T 2p35_A           94 QKADLLYANAVFQWVPDHLAVLSQLMDQLESG-GVLAVQMP  133 (259)
T ss_dssp             SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEE-EEEEEEEE
T ss_pred             CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCC-eEEEEEeC
Confidence            38999986542      234577888999998 99887653

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=95.35  E-value=0.02  Score=49.17  Aligned_cols=90  Identities=11%  Similarity=-0.127  Sum_probs=60.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC-C---------cEEEcCCCCCCccHHHHHHHhc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-V---------TEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g-~---------~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ..+++||++|+|. |..+..+++. + .+|++++.+++-.+.+++.- .         -.++..+.   ..+       .
T Consensus        71 ~~~~~VL~iG~G~-G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~---~~~-------~  137 (262)
T 2cmg_A           71 KELKEVLIVDGFD-LELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL---DLD-------I  137 (262)
T ss_dssp             SCCCEEEEESSCC-HHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGG---GSC-------C
T ss_pred             CCCCEEEEEeCCc-CHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechH---HHH-------H
Confidence            4568999999876 6667777777 7 59999999988877776521 1         12222111   111       1


Q ss_pred             CCCccEEE-EcCCcHHHHHHHHHHhhcCCcEEEEec
Q 020435          208 DGGADYCF-ECVGLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ~~g~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                       +.+|+|+ |+......++.+.+.|+++ |.++...
T Consensus       138 -~~fD~Ii~d~~dp~~~~~~~~~~L~pg-G~lv~~~  171 (262)
T 2cmg_A          138 -KKYDLIFCLQEPDIHRIDGLKRMLKED-GVFISVA  171 (262)
T ss_dssp             -CCEEEEEESSCCCHHHHHHHHTTEEEE-EEEEEEE
T ss_pred             -hhCCEEEECCCChHHHHHHHHHhcCCC-cEEEEEc
Confidence             4699998 4333334588999999998 9998864

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.32  E-value=0.015  Score=49.79  Aligned_cols=71  Identities=17%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      +.+|||+|+ |.+|..+++.+...|. +|+++++++.+.+   ..++ .++..+- .+.   +.+.++.. ++|+||+++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~~~---~~~~-~~~~~Dl-~d~---~~~~~~~~-~~D~vi~~A   72 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLDPA---GPNE-ECVQCDL-ADA---NAVNAMVA-GCDGIVHLG   72 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCCCC---CTTE-EEEECCT-TCH---HHHHHHHT-TCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcccc---CCCC-EEEEcCC-CCH---HHHHHHHc-CCCEEEECC
Confidence            358999997 9999999999888898 9999998875543   1122 2222111 112   23344333 799999998


Q ss_pred             Cc
Q 020435          219 GL  220 (326)
Q Consensus       219 g~  220 (326)
                      +.
T Consensus        73 g~   74 (267)
T 3rft_A           73 GI   74 (267)
T ss_dssp             SC
T ss_pred             CC
Confidence            74

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.32  E-value=0.047  Score=46.86  Aligned_cols=76  Identities=13%  Similarity=0.143  Sum_probs=57.6

Q ss_pred             CCCCEEEEEccC-HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          138 EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       138 ~~~~~vlI~Gag-~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      -.|.+++|+|.| .+|..+++++...|+ +|++..+.                   .   .++.+.+++     +|+||.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~-------------------t---~~L~~~~~~-----ADIVI~  199 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSK-------------------T---KDIGSMTRS-----SKIVVV  199 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---SCHHHHHHH-----SSEEEE
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCC-------------------c---ccHHHhhcc-----CCEEEE
Confidence            679999999985 689999999999999 88877642                   1   344455544     899999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++|.+..+..  ..++++ ..++.+|..
T Consensus       200 Avg~p~~I~~--~~vk~G-avVIDvgi~  224 (276)
T 3ngx_A          200 AVGRPGFLNR--EMVTPG-SVVIDVGIN  224 (276)
T ss_dssp             CSSCTTCBCG--GGCCTT-CEEEECCCE
T ss_pred             CCCCCccccH--hhccCC-cEEEEeccC
Confidence            9998763333  347887 888888764

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=95.31  E-value=0.036  Score=47.21  Aligned_cols=94  Identities=13%  Similarity=0.036  Sum_probs=61.8

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCC---------------------c-EEEcCCC
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV---------------------T-EFVNSKN  193 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~---------------------~-~vi~~~~  193 (326)
                      ..++.+||..|+|. |..+..|++. |. +|++++.|++..+.+++ .+.                     . .++..+-
T Consensus        66 ~~~~~~vLD~GCG~-G~~~~~La~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~  142 (252)
T 2gb4_A           66 GQSGLRVFFPLCGK-AIEMKWFADR-GH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI  142 (252)
T ss_dssp             TCCSCEEEETTCTT-CTHHHHHHHT-TC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred             CCCCCeEEEeCCCC-cHHHHHHHHC-CC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence            45788999999876 6777777765 88 99999999999888754 321                     0 1121111


Q ss_pred             CCCccHHHHHHHhcC-CCccEEEEcCC-----c---HHHHHHHHHHhhcCCcEEEEec
Q 020435          194 CGDKSVSQIIIDMTD-GGADYCFECVG-----L---ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       194 ~~~~~~~~~i~~~~~-~g~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                         .++     .... +.||+|++...     .   ...+..+.+.|+++ |+++++.
T Consensus       143 ---~~l-----~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG-G~l~l~~  191 (252)
T 2gb4_A          143 ---FDL-----PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE-FQYLVAV  191 (252)
T ss_dssp             ---TTG-----GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             ---ccC-----CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC-eEEEEEE
Confidence               111     1112 48999997432     1   22477888999998 9986554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=95.31  E-value=0.038  Score=48.92  Aligned_cols=96  Identities=13%  Similarity=0.175  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CC---------cEEEcCCCCCCccHHHHHHHhc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV---------TEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~---------~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      .++.+||++|+|. |..+..+++..+..+|++++.+++..+.+++. ..         -.++.      .+..+.+.. .
T Consensus       115 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~------~D~~~~l~~-~  186 (321)
T 2pt6_A          115 KEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI------EDASKFLEN-V  186 (321)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE------SCHHHHHHH-C
T ss_pred             CCCCEEEEEcCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE------ccHHHHHhh-c
Confidence            4578999998765 56666777765434999999999988887652 11         12222      233333332 2


Q ss_pred             CCCccEEE-EcCC---------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          208 DGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ~~g~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+.+|+|+ |...         ....++.+.+.|+++ |.++...
T Consensus       187 ~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  230 (321)
T 2pt6_A          187 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN-GYCVAQC  230 (321)
T ss_dssp             CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            34899998 4421         145688899999998 9998864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.31  E-value=0.32  Score=40.94  Aligned_cols=88  Identities=14%  Similarity=0.162  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhH--------------HHHH-HhcCCcEEEcCCCCCCccHHHHH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK--------------FEIG-KRFGVTEFVNSKNCGDKSVSQII  203 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~--------------~~~~-~~~g~~~vi~~~~~~~~~~~~~i  203 (326)
                      .+.+|.|+|+|.+|.++++.+...|. +|++.++++++              .+.+ ..++....        .+..+.+
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~e~~   88 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHL--------AAFADVA   88 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEE--------EEHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceec--------cCHHHHH
Confidence            46799999999999999999998998 99999999886              3332 33443221        2333333


Q ss_pred             HHhcCCCccEEEEcCCcHHHHHHH----HHHhhcCCcEEEEec
Q 020435          204 IDMTDGGADYCFECVGLASLVQEA----YACCRKGWGKTIVLG  242 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g~~~~~~~~----~~~l~~~~G~~v~~g  242 (326)
                      .     ..|+||-|+........+    ...+ ++ ..++.++
T Consensus        89 ~-----~aDvVilavp~~~~~~~~~~i~~~~l-~g-~ivi~~s  124 (245)
T 3dtt_A           89 A-----GAELVVNATEGASSIAALTAAGAENL-AG-KILVDIA  124 (245)
T ss_dssp             H-----HCSEEEECSCGGGHHHHHHHHCHHHH-TT-SEEEECC
T ss_pred             h-----cCCEEEEccCcHHHHHHHHHhhhhhc-CC-CEEEECC
Confidence            3     389999999976533222    2234 55 6666665

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.30  E-value=0.079  Score=49.21  Aligned_cols=102  Identities=16%  Similarity=0.233  Sum_probs=63.9

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHHhc
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ....++++++||=.|+|+ |..++++|..++ ...|++++.++++.+.++    .+|...+.....    +.. .+....
T Consensus        99 ~~L~~~~g~~VLDlcaGp-Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~----Da~-~l~~~~  172 (456)
T 3m4x_A           99 TAAAAKPGEKVLDLCAAP-GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNH----APA-ELVPHF  172 (456)
T ss_dssp             HHHCCCTTCEEEESSCTT-CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECC----CHH-HHHHHH
T ss_pred             HHcCCCCCCEEEEECCCc-CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC----CHH-Hhhhhc
Confidence            345678899999887654 444555665542 238999999999887764    366543322111    222 222222


Q ss_pred             CCCccEEE-E--cCCcH-------------------------HHHHHHHHHhhcCCcEEEEe
Q 020435          208 DGGADYCF-E--CVGLA-------------------------SLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       208 ~~g~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ++.||.|+ |  |.|..                         ..+..+++.|+++ |+++..
T Consensus       173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYs  233 (456)
T 3m4x_A          173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK-GQLIYS  233 (456)
T ss_dssp             TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred             cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEE
Confidence            34899998 5  33321                         3467888899998 988754

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=95.30  E-value=0.047  Score=48.92  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=28.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  176 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~  176 (326)
                      .+|||+|+ |.+|..+++.+...|. +|++++++.++
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   37 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRASS   37 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC----
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence            58999987 9999999998888898 99999987654

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.29  E-value=0.041  Score=47.54  Aligned_cols=76  Identities=17%  Similarity=0.275  Sum_probs=55.6

Q ss_pred             CCCCEEEEEccC-HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          138 EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       138 ~~~~~vlI~Gag-~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      -.|.+++|+|.| .+|..+++++...|+ +|++..+..                      .++.+.++     .+|+||.
T Consensus       159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t----------------------~~L~~~~~-----~ADIVI~  210 (285)
T 3l07_A          159 TEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFT----------------------TDLKSHTT-----KADILIV  210 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC----------------------SSHHHHHT-----TCSEEEE
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc----------------------hhHHHhcc-----cCCEEEE
Confidence            378999999985 589999999999999 887775321                      23333332     4899999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++|.+..+..  +.++++ ..+|.+|..
T Consensus       211 Avg~p~~I~~--~~vk~G-avVIDvgi~  235 (285)
T 3l07_A          211 AVGKPNFITA--DMVKEG-AVVIDVGIN  235 (285)
T ss_dssp             CCCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred             CCCCCCCCCH--HHcCCC-cEEEEeccc
Confidence            9998763332  457887 888888764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.28  E-value=0.097  Score=45.32  Aligned_cols=96  Identities=19%  Similarity=0.090  Sum_probs=60.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcC-CCEEEEEcCChhHH--HHHHhcCCcEEE-cCCCCCCccHHHHHHHhcCCCccEE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKF--EIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g-~~~V~~~~~~~~~~--~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      ..+|||+|+ |.+|..+++.+...| . +|+++++++++.  +.+...++..+. |..+      .+.+.+... ++|+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d------~~~l~~~~~-~~d~v   76 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKKAAKELRLQGAEVVQGDQDD------QVIMELALN-GAYAT   76 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTSHHHHHHHHTTCEEEECCTTC------HHHHHHHHT-TCSEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCCHHHHHHHHCCCEEEEecCCC------HHHHHHHHh-cCCEE
Confidence            468999997 999999998888778 7 999999987654  233444554332 2222      233444333 69999


Q ss_pred             EEcCCcHH---------HHHHHHHHhhcC-CcEEEEecc
Q 020435          215 FECVGLAS---------LVQEAYACCRKG-WGKTIVLGV  243 (326)
Q Consensus       215 ~d~~g~~~---------~~~~~~~~l~~~-~G~~v~~g~  243 (326)
                      |.+.+...         ....+++.+... -+++|..+.
T Consensus        77 i~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~  115 (299)
T 2wm3_A           77 FIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGL  115 (299)
T ss_dssp             EECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred             EEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence            99987421         123444444432 147777543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.28  E-value=0.027  Score=49.88  Aligned_cols=77  Identities=22%  Similarity=0.267  Sum_probs=47.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHH-HHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF-EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~  215 (326)
                      .+.+|||+|+ |.+|..+++.+...|. +|++++++.... +.+..+..-.++..+- .+.   +.+.+...+ .+|+||
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl-~d~---~~~~~~~~~~~~D~vi   94 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD-KVVGIDNFATGRREHLKDHPNLTFVEGSI-ADH---ALVNQLIGDLQPDAVV   94 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCGGGSCCCTTEEEEECCT-TCH---HHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCCccchhhHhhcCCceEEEEeC-CCH---HHHHHHHhccCCcEEE
Confidence            3578999987 9999999999888898 999999875432 2222222112232221 112   233333333 699999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      ++++.
T Consensus        95 h~A~~   99 (333)
T 2q1w_A           95 HTAAS   99 (333)
T ss_dssp             ECCCC
T ss_pred             ECcee
Confidence            98874

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=95.28  E-value=0.031  Score=45.77  Aligned_cols=94  Identities=15%  Similarity=0.119  Sum_probs=62.9

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CCcEEEcCCCCCCccHHHHHHHhcCCCccEE
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      .+.++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++. +...+. .+-   .++    .  ..+.+|+|
T Consensus        40 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~d~---~~~----~--~~~~fD~v  106 (211)
T 3e23_A           40 ELPAGAKILELGCGA-GYQAEAMLAA-GF-DVDATDGSPELAAEASRRLGRPVRT-MLF---HQL----D--AIDAYDAV  106 (211)
T ss_dssp             TSCTTCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHTSCCEE-CCG---GGC----C--CCSCEEEE
T ss_pred             hcCCCCcEEEECCCC-CHHHHHHHHc-CC-eEEEECCCHHHHHHHHHhcCCceEE-eee---ccC----C--CCCcEEEE
Confidence            456788999998765 6666666665 77 999999999988887664 443221 111   111    0  12389999


Q ss_pred             EEcCCc--------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          215 FECVGL--------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       215 ~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +....-        ...+..+.+.|+++ |.++..-.
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  142 (211)
T 3e23_A          107 WAHACLLHVPRDELADVLKLIWRALKPG-GLFYASYK  142 (211)
T ss_dssp             EECSCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             EecCchhhcCHHHHHHHHHHHHHhcCCC-cEEEEEEc
Confidence            864321        23577888999998 99887643

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.27  E-value=0.046  Score=47.75  Aligned_cols=68  Identities=22%  Similarity=0.278  Sum_probs=38.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      +.+|||+|+ |.+|..+++.+...|. +|++++++.++.      + -...|..+  ...+.+.+...   ++|+||+++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~------~-~~~~Dl~d--~~~~~~~~~~~---~~d~vih~A   68 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGFRRARP------K-FEQVNLLD--SNAVHHIIHDF---QPHVIVHCA   68 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC---------------------------CHHHHHHH---CCSEEEECC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC-eEEEEccCCCCC------C-eEEecCCC--HHHHHHHHHhh---CCCEEEECC
Confidence            468999997 9999999999988898 999999765431      1 01112111  12233333222   689999988


Q ss_pred             Cc
Q 020435          219 GL  220 (326)
Q Consensus       219 g~  220 (326)
                      +.
T Consensus        69 ~~   70 (315)
T 2ydy_A           69 AE   70 (315)
T ss_dssp             --
T ss_pred             cc
Confidence            74

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=95.27  E-value=0.059  Score=47.58  Aligned_cols=73  Identities=19%  Similarity=0.194  Sum_probs=46.5

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCC-ccHHHHHHHhcCCCccEEEEcC
Q 020435          142 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD-KSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~-~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      +|||+|+ |.+|..+++.+... |. +|++++++.++.+.+.....-.++..+- .+ .+..+.+.+    ++|+||+++
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~----~~d~vih~A   75 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAISRFLNHPHFHFVEGDI-SIHSEWIEYHVK----KCDVVLPLV   75 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGGGGGTTCTTEEEEECCT-TTCSHHHHHHHH----HCSEEEECB
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcchHHHhhcCCCeEEEeccc-cCcHHHHHhhcc----CCCEEEEcc
Confidence            7999997 99999999988887 88 9999999877654332221112332221 11 222222222    589999987


Q ss_pred             Cc
Q 020435          219 GL  220 (326)
Q Consensus       219 g~  220 (326)
                      +.
T Consensus        76 ~~   77 (345)
T 2bll_A           76 AI   77 (345)
T ss_dssp             CC
T ss_pred             cc
Confidence            63

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=95.25  E-value=0.023  Score=48.45  Aligned_cols=101  Identities=16%  Similarity=0.177  Sum_probs=65.2

Q ss_pred             hhcccC-CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHH
Q 020435          133 RTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       133 ~~~~~~-~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~  204 (326)
                      ....++ ++++||-.|+|. |..+..+++.... +|++++.+++..+.+++    .+..   .++..+-   .++   ..
T Consensus        42 ~~~~~~~~~~~vLDlG~G~-G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~---~~~---~~  113 (259)
T 3lpm_A           42 KFSYLPIRKGKIIDLCSGN-GIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL---KKI---TD  113 (259)
T ss_dssp             HHCCCCSSCCEEEETTCTT-THHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCG---GGG---GG
T ss_pred             HHhcCCCCCCEEEEcCCch-hHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcH---HHh---hh
Confidence            335667 889999998765 5666666766555 99999999998887754    3321   3333222   221   11


Q ss_pred             HhcCCCccEEEEcCC---c-----------------------HHHHHHHHHHhhcCCcEEEEec
Q 020435          205 DMTDGGADYCFECVG---L-----------------------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g---~-----------------------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ....+.+|+|+....   .                       ...+..+.+.|+++ |+++.+-
T Consensus       114 ~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  176 (259)
T 3lpm_A          114 LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG-GKANFVH  176 (259)
T ss_dssp             TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC-cEEEEEE
Confidence            111348999996311   0                       23577888999998 9999864

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.24  E-value=0.044  Score=47.38  Aligned_cols=69  Identities=20%  Similarity=0.140  Sum_probs=47.6

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      +|.|+|+|.+|...+..+.. |. +|++.++++++.+.+.+.|... .+  .   .+.   +     ..+|+||.|+..+
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~g~~~-~~--~---~~~---~-----~~~D~vi~~v~~~   66 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEEFGSE-AV--P---LER---V-----AEARVIFTCLPTT   66 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHHHCCE-EC--C---GGG---G-----GGCSEEEECCSSH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHCCCcc-cC--H---HHH---H-----hCCCEEEEeCCCh
Confidence            68899999999988887777 98 8999999988887776555431 21  1   111   0     1477888777765


Q ss_pred             HHHHH
Q 020435          222 SLVQE  226 (326)
Q Consensus       222 ~~~~~  226 (326)
                      .....
T Consensus        67 ~~~~~   71 (289)
T 2cvz_A           67 REVYE   71 (289)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            43333

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=95.24  E-value=0.036  Score=48.66  Aligned_cols=99  Identities=11%  Similarity=0.091  Sum_probs=62.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---------E-EEcCCCCCCccHHHHH
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---------E-FVNSKNCGDKSVSQII  203 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---------~-vi~~~~~~~~~~~~~i  203 (326)
                      .++.+||-+|+|. |..+..+++..+. .|++++.+++..+.+++    .+..         - +.+...   +.+.+.+
T Consensus        47 ~~~~~VLDlGCG~-G~~l~~~~~~~~~-~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~---d~~~~~l  121 (302)
T 2vdw_A           47 SNKRKVLAIDFGN-GADLEKYFYGEIA-LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRS---DTFVSSV  121 (302)
T ss_dssp             CSCCEEEETTCTT-TTTHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTS---SSHHHHH
T ss_pred             CCCCeEEEEecCC-cHhHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhccc---chhhhhh
Confidence            3578999999865 4444455655556 89999999998887764    2321         0 111111   3344445


Q ss_pred             HHhcC-CCccEEEEcCC---------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          204 IDMTD-GGADYCFECVG---------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       204 ~~~~~-~g~d~v~d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+... +.+|+|+....         -...++.+.++|+|+ |.++...
T Consensus       122 ~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG-G~~i~~~  169 (302)
T 2vdw_A          122 REVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASG-GKVLITT  169 (302)
T ss_dssp             HTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC-CEEEEEe
Confidence            44333 38999985321         134588899999998 9987653

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.24  E-value=0.046  Score=47.56  Aligned_cols=78  Identities=18%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             CCCCEEEEEccC-HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          138 EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       138 ~~~~~vlI~Gag-~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      -.|.+++|+|.| .+|..+++++...|+ +|++..+.....+                    +.+.++     .+|+||.
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~~l~--------------------l~~~~~-----~ADIVI~  216 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTSTED--------------------MIDYLR-----TADIVIA  216 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSCHHH--------------------HHHHHH-----TCSEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCCCch--------------------hhhhhc-----cCCEEEE
Confidence            479999999985 589999999999999 8888875322221                    002222     4899999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +++.+..+..  ..++++ ..+|.+|..
T Consensus       217 Avg~p~~I~~--~~vk~G-avVIDvgi~  241 (300)
T 4a26_A          217 AMGQPGYVKG--EWIKEG-AAVVDVGTT  241 (300)
T ss_dssp             CSCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred             CCCCCCCCcH--HhcCCC-cEEEEEecc
Confidence            9998763333  347887 888888853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	326
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	4e-38
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	2e-36
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	7e-34
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	1e-31
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	4e-31
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	1e-30
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	3e-29
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-21
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	3e-18
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	2e-17
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	3e-17
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	2e-14
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	3e-14
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	4e-13
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	2e-12
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	3e-11
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	3e-09
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	4e-09
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	1e-08
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	2e-08
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	3e-08
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	6e-07
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	2e-06
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	2e-06
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	7e-06
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	1e-05
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	3e-04
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	0.003

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  131 bits (331), Expect = 4e-38
 Identities = 68/177 (38%), Positives = 106/177 (59%), Gaps = 2/177 (1%)

Query: 112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 171
            PP + CL+ CG STG GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 172 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 231
           +  +KFE     G TE ++ K+   K +S+++ +MT     Y FE +G    + +A A C
Sbjct: 62  LNKDKFEKAMAVGATECISPKD-STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASC 120

Query: 232 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK 288
              +G ++V+GV      L+     +L +G+   G +FGGLK++ D+P L+  ++ K
Sbjct: 121 HMNYGTSVVVGVPPSAKMLTYDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAK 176

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  127 bits (319), Expect = 2e-36
 Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 3/176 (1%)

Query: 114 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 173
           P  +CL+ CG +TG GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV   
Sbjct: 2   PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61

Query: 174 SEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK 233
            +KF      G TE +N K+  DK + ++I + T+GG DY  EC G    +  A      
Sbjct: 62  KDKFPKAIELGATECLNPKD-YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC 120

Query: 234 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 289
           G G T+VLG+  P  +L L    +L +G+ L GS+FGG K + ++  L+  YM K+
Sbjct: 121 GSGVTVVLGLASPNERLPLDPL-LLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKK 174

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  120 bits (301), Expect = 7e-34
 Identities = 68/177 (38%), Positives = 108/177 (61%), Gaps = 2/177 (1%)

Query: 113 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 172
           P  + CL+ CG STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+
Sbjct: 2   PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI 61

Query: 173 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 232
             +KF   K  G TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC+
Sbjct: 62  NKDKFAKAKEVGATECVNPQD-YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQ 120

Query: 233 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 289
           + +G ++++G   P SQ    +  +L SG+   G++FGG K+K  +P L+  +M K+
Sbjct: 121 EAYGVSVIVG-VPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKK 176

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  114 bits (286), Expect = 1e-31
 Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 4/177 (2%)

Query: 113 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 172
              R CL+ CG S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61

Query: 173 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 232
             EKF   K  G T+ +N +   DK V  +I ++T GG DY  +C G A  ++ A  C  
Sbjct: 62  NGEKFPKAKALGATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV 120

Query: 233 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 289
            GWG   V+G      ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+
Sbjct: 121 LGWGSCTVVGA--KVDEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKK 174

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  113 bits (282), Expect = 4e-31
 Identities = 78/177 (44%), Positives = 114/177 (64%), Gaps = 2/177 (1%)

Query: 113 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 172
           P ++ CLL CG+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+
Sbjct: 2   PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI 61

Query: 173 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 232
             +KF   K FG TE +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C 
Sbjct: 62  NKDKFARAKEFGATECINPQD-FSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH 120

Query: 233 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 289
           KGWG ++V+GV   G +++   F  L +G+   G+ FGG K+   +P L+  YM K+
Sbjct: 121 KGWGVSVVVGVAASGEEIATRPF-QLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKK 176

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score =  112 bits (280), Expect = 1e-30
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 171
           VP      L CG+ TG GA      V   S+ V +G G++GL+    A++CGA+ II VD
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60

Query: 172 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 231
           ++  + E+ K+ G T  +NSK    +     I ++TDGG ++  E  G   ++++     
Sbjct: 61  IVESRLELAKQLGATHVINSK---TQDPVAAIKEITDGGVNFALESTGSPEILKQGVDAL 117

Query: 232 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 289
               GK  V+G  Q G+       ++L  GK ++G + G    K  IP L++ Y   +
Sbjct: 118 GI-LGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGK 174

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  108 bits (270), Expect = 3e-29
 Identities = 77/177 (43%), Positives = 107/177 (60%), Gaps = 3/177 (1%)

Query: 113 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 172
           P +  CLL CGVSTG GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+
Sbjct: 2   PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL 61

Query: 173 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 232
             +KFE  K FG T+FVN  +   + +SQ++  MT+GG D+  ECVG   +++ A   C 
Sbjct: 62  NPDKFEKAKVFGATDFVNPND-HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCL 120

Query: 233 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 289
           KGWG ++++G          +    L +G+   GS+FGG K K  +P ++K Y+DK+
Sbjct: 121 KGWGVSVLVGW--TDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKK 175

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 88.8 bits (219), Expect = 1e-21
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 1/146 (0%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
                  FP +LGHE  G+VESVG  V     G+ VIP F++ C EC  C+S K N C  
Sbjct: 55  EGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVK 114

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                SP +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+V  +     
Sbjct: 115 GWANESPDVMSPKETRF-TCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITH 173

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIF 146
              + +   A     + +   TV+  
Sbjct: 174 RMPLESVNDAIDLMKHGKCIRTVLSL 199

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 3e-18
 Identities = 52/144 (36%), Positives = 70/144 (48%), Gaps = 1/144 (0%)

Query: 2   KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 61
            D    FP ILGH   G+VESVGE V  +  GD VIP ++  C EC  C + K NLC   
Sbjct: 54  ADPEGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKI 113

Query: 62  PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 121
                  +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP +  +     +
Sbjct: 114 RVTQGKGLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHN 172

Query: 122 CGVSTGVGAAWRTANVEVGSTVVI 145
                   A     + +   TVV 
Sbjct: 173 LSFDEINKAFELMHSGKSIRTVVK 196

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 76.9 bits (188), Expect = 2e-17
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 171
           +P   A +++  ++TG   A   A++E+GS+VV+ G+G++GL    GA+L GA RIIGV 
Sbjct: 1   MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 59

Query: 172 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 231
                 E  K +G T+ +N          Q++      G D      G +  + +A    
Sbjct: 60  SRPICVEAAKFYGATDILN--YKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMV 117

Query: 232 RKGWGKTIVLGVDQPGSQLSLS--SFEVLHSGKILMGSLFGGLKAKSDIPILL 282
           + G G    +     G  L +    +    + K + G L  G + +++    +
Sbjct: 118 KPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERLRDM 169

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 76.5 bits (187), Expect = 3e-17
 Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 11/155 (7%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
            +  P+ FP ILGHEA+GVVES+G  V  V  GD VIP F+  C  C  C+S   N C  
Sbjct: 54  KEIIPSKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEK 113

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
                   +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP +  N     
Sbjct: 114 NDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFL--- 169

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 155
                  V        +     ++  G G   + +
Sbjct: 170 -------VSTKLTLDQINKAFELLSSGQGVRSIMI 197

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 68.8 bits (167), Expect = 2e-14
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC-- 58
                A+FP +LGHE  G+VESVG  V     GD VIP F   C  C  C S   NLC  
Sbjct: 54  DPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGK 113

Query: 59  -SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA 117
              F +        +  +     +G +I+HF+ VSSFS+YTV+  A++ +VD     +  
Sbjct: 114 LRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLL 173

Query: 118 CLLSCGVSTGVGAAWRTANVEVGSTVVI 145
              +    +   A      ++ G ++  
Sbjct: 174 VTHALPFESINDAI---DLMKEGKSIRT 198

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 68.3 bits (166), Expect = 3e-14
 Identities = 50/145 (34%), Positives = 66/145 (45%), Gaps = 4/145 (2%)

Query: 3   DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP 62
                 P I GHEA G+VES+GE V  V  GD VIP F   C +C  C+  +GN C    
Sbjct: 56  TLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKND 115

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
             +     +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D          L  
Sbjct: 116 LSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFA---LDPLIT 171

Query: 123 GVSTGVGAAWRTANVEVGSTVVIFG 147
            V            +  G ++    
Sbjct: 172 HVLPFEKINEGFDLLRSGESIRTIL 196

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 64.9 bits (157), Expect = 4e-13
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 21/192 (10%)

Query: 117 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 176
              LS  + TG   A   A V  GSTV + G G +GLA A  ARL GA  +I  D+   +
Sbjct: 4   LTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR 62

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL--------------- 220
               K  G      S    D  + + I  +      D   + VG                
Sbjct: 63  LAHAKAQGFEIADLSL---DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAP 119

Query: 221 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPI 280
           A+++       R   GK  + G+       ++ +   + S  I  G  +    +      
Sbjct: 120 ATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT 178

Query: 281 LLKRYMDKELEL 292
            + +Y    ++ 
Sbjct: 179 PVMKYNRALMQA 190

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 62.7 bits (151), Expect = 2e-12
 Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 3/173 (1%)

Query: 117 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 176
             +  C  +T   A         G TVVI G G +GL     AR  GA  +I +     +
Sbjct: 6   LAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR 65

Query: 177 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW 235
            ++ +  G    +N +    +   + I+D+T G GAD+  E  G +  + E     R+G 
Sbjct: 66  LKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG- 124

Query: 236 GKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSLFGGLKAKSDIPILLKRYMD 287
           G   V GV  P   +    +E L        G              +  R   
Sbjct: 125 GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQ 177

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 3e-11
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 8/148 (5%)

Query: 120 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 179
           LS G+      A R   V +G  V++ G G IG+     A+  GA +++  D+ + +   
Sbjct: 12  LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 66

Query: 180 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI 239
            K  G    +       + +++ +        +   EC G  + +Q      R G     
Sbjct: 67  AKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG---GT 123

Query: 240 VLGVDQPGSQLSLSSFEVLHSGKILMGS 267
           ++ V       ++           + G 
Sbjct: 124 LVLVGLGSEMTTVPLLHAAIREVDIKGV 151

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 53.0 bits (126), Expect = 3e-09
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 11/172 (6%)

Query: 117 ACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 175
              L+    T   A  + A  +  G+ V I G+G +G    +  ++     +I +DV  E
Sbjct: 9   MAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE 68

Query: 176 KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW 235
           K ++ +R G    V+++      V Q++      G +   + VG  + V        +  
Sbjct: 69  KLKLAERLGADHVVDAR---RDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM- 124

Query: 236 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD 287
           G+ I++G           +  V+ S     GSL G      ++  L+   + 
Sbjct: 125 GRLIIVGYGGELRF---PTIRVISSEVSFEGSLVGNYV---ELHELVTLALQ 170

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 53.4 bits (127), Expect = 4e-09
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 2/139 (1%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P +LGHE  G++E++G NV  +  GD V+  +   C +C  C +     CS F  +   
Sbjct: 56  LPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFS 114

Query: 68  WMPRDQTSRF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 126
               +         +G    HF + SSF+ Y +    + VKV    P ++          
Sbjct: 115 GADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEI 174

Query: 127 GVGAAWRTANVEVGSTVVI 145
              A      + +   + I
Sbjct: 175 NQAAIDSRKGITLKPIIKI 193

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 51.5 bits (122), Expect = 1e-08
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 11/151 (7%)

Query: 120 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 179
           LS GV      A R A V++G+TV++ G G IGL     A+  GA  +        + E+
Sbjct: 12  LSVGV-----HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP-RRLEV 65

Query: 180 GKRFGVTEFVN--SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK 237
            K  G    +        + S+ + I        +   +C G    +       R   G 
Sbjct: 66  AKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRT-GGT 124

Query: 238 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSL 268
            +++G       +++           +    
Sbjct: 125 LMLVG--MGSQMVTVPLVNACAREIDIKSVF 153

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 24/145 (16%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           + +F    P +LGHEA G VE VG +V  +  GD V     A       C+  + NL  +
Sbjct: 56  IGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPS 115

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
             F  +P                         +   +   + A   K+   V P      
Sbjct: 116 IFFCATPPDDG---------------------NLCRFYKHNAAFCYKLPDNVKPLVTHRF 154

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVI 145
               +     A+ T    +G  +++
Sbjct: 155 PLEKAL---EAFETFKKGLGLKIML 176

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 18/145 (12%)

Query: 5   PAVFPRILGHEAIGVVESVGENVD-GVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFP 62
               P ++GHE +G V  +G   + G+  G  V +   +  C EC  C++     C+ F 
Sbjct: 59  NMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFV 118

Query: 63  FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 122
              S                     +VS   ++ Y  +    VV +   +      +   
Sbjct: 119 TTYSQPYE---------------DGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEA 163

Query: 123 GVSTGVGAAWRTANVEVGSTVVIFG 147
           GV           +V    T+V + 
Sbjct: 164 GVHEAF-ERMEKGDVRYRFTLVGYD 187

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 46.5 bits (109), Expect = 6e-07
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 11/164 (6%)

Query: 110 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG 169
           P         L C   T      R      G  V + G+G +G    + A       ++ 
Sbjct: 2   PQEQLAAVAPLLCAGITTYSP-LRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVA 59

Query: 170 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYA 229
                 K E  K  G  E VNS+N  +               D+    V     + +   
Sbjct: 60  FTTSEAKREAAKALGADEVVNSRNADEM-------AAHLKSFDFILNTVAAPHNLDDFTT 112

Query: 230 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 273
             ++  G   ++G        S   F ++   + + GS+ GG+ 
Sbjct: 113 LLKRD-GTMTLVGA-PATPHKSPEVFNLIMKRRAIAGSMIGGIP 154

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
           + DF    P ++GHEA G V  VG+NV  + +GD V       C  C  C+  K NLC  
Sbjct: 50  IADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPD 109

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 120
             F  +P                         + + Y V       K+       +    
Sbjct: 110 LTFCATPPDD---------------------GNLARYYVHAADFCHKLPDNCNVKQLVTH 148

Query: 121 SCGVSTGVGAAWRTANVEVGSTVVIFG 147
           S  +   V  A+  A  +  +T+ +  
Sbjct: 149 SFKLEQTVD-AFEAARKKADNTIKVMI 174

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 93  SFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS 150
             +EY ++  A  +++K+           ++  V   V +    A    G     F  G 
Sbjct: 133 GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDD-APRGYG----EFDAGV 187

Query: 151 IGLAVAEGARLCGA 164
               V +  +   A
Sbjct: 188 PKKFVIDPHKTFSA 201

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 11/163 (6%)

Query: 112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 171
           +P + A  L CG  T V +         G  V I GLG IG      ++         + 
Sbjct: 1   IPSHLAAPLLCGGLT-VYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVIS 58

Query: 172 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS-LVQEAYAC 230
             S K E   + G   ++ +   GD        +      D    C    + +       
Sbjct: 59  RSSRKREDAMKMGADHYIATLEEGD------WGEKYFDTFDLIVVCASSLTDIDFNIMPK 112

Query: 231 CRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 273
             K  G+ + + + +    LSL           +  S  G +K
Sbjct: 113 AMKVGGRIVSISIPEQHEMLSL--KPYGLKAVSISYSALGSIK 153

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 16/146 (10%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCS 59
            +    V+P + GHE +G V +VG+ V+    GD V +   +  C  C  C     N C 
Sbjct: 47  SEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCD 106

Query: 60  AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP-NRAC 118
                 +   P +                     +S+  V+   +V+++        RA 
Sbjct: 107 HMTGTYNSPTPDEPGHTLG--------------GYSQQIVVHERYVLRIRVADIEMIRAD 152

Query: 119 LLSCGVSTGVGAAWRTANVEVGSTVV 144
            ++      +    +   V    T+ 
Sbjct: 153 QINEAYERMLRGDVKYRFVIDNRTLT 178

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 23/138 (16%)

Query: 8   FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 67
            P  LGHE  G +E VG+ V G  +GD+V  +       C  CR  + +LC +       
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSP------ 115

Query: 68  WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 127
                                    +++EY ++     +     V P     +    +  
Sbjct: 116 ----------------RWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159

Query: 128 VGAAWRTANVEVGSTVVI 145
                      +G  V+I
Sbjct: 160 AIDNLENFKA-IGRQVLI 176

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 26/158 (16%), Positives = 43/158 (27%), Gaps = 32/158 (20%)

Query: 1   MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 60
                     ILGHEA+G V  VG  V     GD VI          +  ++      + 
Sbjct: 46  EGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNG 105

Query: 61  FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRAC 118
                     +D                     F EY  ++ A  ++  +    P +   
Sbjct: 106 MLAGWKFSNFKDGV-------------------FGEYFHVNDADMNLAIL----PKDVD- 141

Query: 119 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA 156
            LS  V+             +   +++       L  A
Sbjct: 142 -LSKLVTHVYHGFDH-----IEEALLLMKDKPKDLIKA 173

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.97
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.96
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.95
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.95
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.94
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.94
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.94
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.94
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.94
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.94
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.94
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.93
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.93
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.93
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.93
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.93
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.93
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.93
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.93
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.92
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.92
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.91
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.91
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.91
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.91
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.91
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.9
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.9
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.89
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.88
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.88
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.88
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.87
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.86
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.85
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.85
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.85
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.84
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.83
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.83
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.83
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.82
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.77
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.76
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.73
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.6
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.59
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.49
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.47
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.46
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.38
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.62
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	98.44
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.13
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.97
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.78
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.75
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.71
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.63
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.59
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.56
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.54
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.53
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.48
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.47
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.46
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.46
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.45
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.42
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.41
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.41
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.37
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.36
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.35
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.34
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.32
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.3
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.3
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.29
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.29
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.26
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.25
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.19
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.19
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.19
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.17
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.16
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.15
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.12
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.12
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.12
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.12
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.11
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.1
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.09
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.09
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.09
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.09
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.08
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.07
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.06
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.06
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.05
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.04
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.03
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.01
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.0
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.0
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.99
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.98
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	96.98
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.97
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.94
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.94
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	96.91
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.91
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.89
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.89
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.89
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.88
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.86
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.86
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.84
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.83
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.83
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.81
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.81
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.81
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.78
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.77
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.76
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.75
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.75
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.71
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.69
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.66
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.66
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.62
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.61
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.58
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.56
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.55
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.49
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.47
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.44
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.41
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.36
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.36
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	96.35
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.16
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.15
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.15
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.14
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.1
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.09
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.03
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.01
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	96.01
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.0
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.0
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	96.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.99
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.98
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.84
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	95.77
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.76
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.6
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	95.54
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.5
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	95.38
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.35
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.31
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	95.24
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.22
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.2
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	95.17
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	95.07
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	95.05
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	95.03
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.01
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	94.9
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.87
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.85
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.85
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.79
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.78
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	94.75
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.69
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	94.69
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	94.68
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.68
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	94.67
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.64
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.61
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.61
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.57
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.55
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.55
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	94.48
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	94.46
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.4
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	94.26
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.26
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	94.24
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.18
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.18
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.16
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	94.15
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	94.13
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	94.13
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	94.09
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.07
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	93.99
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.92
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.86
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.84
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	93.77
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	93.74
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	93.73
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.73
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.71
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.62
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.62
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.6
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.53
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	93.51
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	93.48
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.46
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.4
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.2
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.17
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	93.11
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.08
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.04
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.03
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.01
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.0
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.93
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.92
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	92.83
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.7
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	92.63
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	92.61
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.61
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	92.56
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	92.53
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	92.53
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	92.49
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	92.49
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.47
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	92.37
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	92.36
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	92.31
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.2
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	92.19
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.17
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.06
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.05
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.04
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	92.04
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.01
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.97
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	91.97
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	91.92
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	91.86
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	91.83
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	91.82
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.8
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.73
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	91.72
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.71
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.71
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.69
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.69
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	91.67
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.66
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.63
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	91.55
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.53
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	91.51
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	91.48
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.36
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	91.21
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	91.21
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	91.17
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.16
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	91.15
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.92
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	90.56
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.51
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	90.4
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.4
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	90.37
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	90.36
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	90.18
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	90.05
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	90.03
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.03
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	89.96
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.92
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.79
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	89.77
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	89.66
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	89.4
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	89.34
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	89.16
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.98
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	88.95
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.85
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.78
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	88.7
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	88.58
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.49
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	88.42
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	88.4
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.26
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	88.22
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	88.17
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.17
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	88.16
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.15
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.1
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.01
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.0
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	87.89
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.69
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	87.32
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	87.32
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.22
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	87.02
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	86.98
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	86.91
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	86.83
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	86.82
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	86.55
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	86.46
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	86.46
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.27
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.26
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	86.22
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	86.05
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	86.01
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.85
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.83
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.82
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.76
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.55
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	85.49
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	85.39
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.34
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.33
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	85.3
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	85.27
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	85.2
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	85.13
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	84.88
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.86
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	84.4
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	84.13
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	84.13
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.1
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.05
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	83.97
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	83.87
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.67
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	83.59
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.58
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	83.56
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	83.52
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	83.51
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	83.21
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.12
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.78
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	82.62
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	82.5
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	82.21
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	82.14
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	82.06
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	81.91
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	81.86
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	81.71
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	81.6
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	81.2
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	81.11
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	81.03
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	80.81
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	80.67
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	80.46
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	80.35
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	80.31
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	80.06
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	80.02

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.97  E-value=1.1e-29  Score=207.30  Aligned_cols=174  Identities=31%  Similarity=0.557  Sum_probs=159.9

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcC
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  191 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~  191 (326)
                      +|++.|+.++|.+.|||+++++.+++++|++|||+|+|++|++++|+|+.+|+.+|+++++++++++.++++|+++++++
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~   80 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS   80 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence            45788999999999999999999999999999999999999999999999999778888999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccC
Q 020435          192 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  271 (326)
Q Consensus       192 ~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  271 (326)
                      ++   +++.+.+++++++++|+||||+|++..++.++++++++ |+++++|........+++...++.|++++.|++.+.
T Consensus        81 ~~---~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~  156 (174)
T d1f8fa2          81 KT---QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGS  156 (174)
T ss_dssp             TT---SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGG
T ss_pred             CC---cCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCc-eEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecC
Confidence            88   88999999999889999999999998899999999998 999999976556677889999999999999998887


Q ss_pred             CCCCCCHHHHHHHHhCCC
Q 020435          272 LKAKSDIPILLKRYMDKE  289 (326)
Q Consensus       272 ~~~~~~~~~~~~l~~~g~  289 (326)
                      ...+++++++++++++|+
T Consensus       157 ~~~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         157 GSPKKFIPELVRLYQQGK  174 (174)
T ss_dssp             SCHHHHHHHHHHHHHTTS
T ss_pred             CChHHHHHHHHHHHHcCC
Confidence            666678999999999985

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=201.29  Aligned_cols=167  Identities=19%  Similarity=0.278  Sum_probs=149.6

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEc
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  190 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~  190 (326)
                      +|+++||+++++++|||+++++.+++++|++|||+|+ |++|++++|+||++|+ +|+++++++++.++++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            5889999999999999999989999999999999996 9999999999999999 9999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeec
Q 020435          191 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  269 (326)
Q Consensus       191 ~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~  269 (326)
                      +.+   .++.+.+++.+++ ++|+||||+|++. ++.++++++++ |+++.+|..   ...++++..++.|++++.++++
T Consensus        80 ~~~---~~~~~~i~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~-G~iv~~G~~---~~~~~~~~~~~~k~~~i~g~~~  151 (174)
T d1yb5a2          80 HRE---VNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLLSHG-GRVIVVGSR---GTIEINPRDTMAKESSIIGVTL  151 (174)
T ss_dssp             TTS---TTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHEEEE-EEEEECCCC---SCEEECTHHHHTTTCEEEECCG
T ss_pred             ccc---ccHHHHhhhhhccCCceEEeecccHHH-HHHHHhccCCC-CEEEEEecC---CCCCCCHHHHHHCCCEEEEEEe
Confidence            988   8999999999988 9999999999876 99999999998 999999864   3467788888889999999875


Q ss_pred             cCCCCCCCHHHHHHHHhCC
Q 020435          270 GGLKAKSDIPILLKRYMDK  288 (326)
Q Consensus       270 ~~~~~~~~~~~~~~l~~~g  288 (326)
                      ... .++++++++++++++
T Consensus       152 ~~~-~~~~~~~~~~~l~~g  169 (174)
T d1yb5a2         152 FSS-TKEEFQQYAAALQAG  169 (174)
T ss_dssp             GGC-CHHHHHHHHHHHHHH
T ss_pred             cCC-CHHHHHHHHHHHHHH
Confidence            543 245688888877765

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.95  E-value=6.3e-27  Score=190.48  Aligned_cols=173  Identities=39%  Similarity=0.693  Sum_probs=146.0

Q ss_pred             CccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCC
Q 020435          113 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  192 (326)
Q Consensus       113 s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~  192 (326)
                      +|.|||++.|.+.|||+++++.+++++|++|||+|+|++|++++|+||++|+.+|++++++++++++++++|+++++|+.
T Consensus         1 ~P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~   80 (174)
T d1p0fa2           1 APLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPK   80 (174)
T ss_dssp             CCGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCC
Confidence            35779999999999999998999999999999999999999999999999987999999999999999999999999876


Q ss_pred             CCCCccHHHHHHH-hcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccC
Q 020435          193 NCGDKSVSQIIID-MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  271 (326)
Q Consensus       193 ~~~~~~~~~~i~~-~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  271 (326)
                      +  .++..+.+.+ .+++++|++|||++.+..+..++..+++++|+++.+|...+...++++...++ +++++.|+++++
T Consensus        81 ~--~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~  157 (174)
T d1p0fa2          81 D--YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLL-TGRSLKGSVFGG  157 (174)
T ss_dssp             G--CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHH-TTCEEEECSGGG
T ss_pred             C--chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHh-CCCEEEEEEeCC
Confidence            5  1333444444 44459999999999998888888887662289999998666666777765554 478999999887


Q ss_pred             CCCCCCHHHHHHHHhCCC
Q 020435          272 LKAKSDIPILLKRYMDKE  289 (326)
Q Consensus       272 ~~~~~~~~~~~~l~~~g~  289 (326)
                      +. .+|+.++++++++|+
T Consensus       158 ~~-~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         158 FK-GEEVSRLVDDYMKKK  174 (174)
T ss_dssp             CC-GGGHHHHHHHHHTTS
T ss_pred             CC-HHHHHHHHHHHHcCC
Confidence            64 458999999999985

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.95  E-value=6.8e-27  Score=190.96  Aligned_cols=175  Identities=41%  Similarity=0.743  Sum_probs=145.3

Q ss_pred             CccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCC
Q 020435          113 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  192 (326)
Q Consensus       113 s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~  192 (326)
                      |+++||+++|++.|||+++.+.+++++|++|||+|+|++|++++|+++.+|+.+|++++++++++++++++|+++++++.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            57889999999999999988899999999999999999999999999999987899999999999999999999999886


Q ss_pred             CCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCC
Q 020435          193 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  272 (326)
Q Consensus       193 ~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (326)
                      + ..++..+.+++.+++++|+|||++|....+..+..+++++ ++++.++...............+.+++++.|+..++.
T Consensus        82 ~-~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~  159 (176)
T d2fzwa2          82 D-FSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG-WGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGW  159 (176)
T ss_dssp             G-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGC
T ss_pred             c-hhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC-ceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCC
Confidence            4 1234555556666569999999999999888999999997 8887776544333333333333456899999998887


Q ss_pred             CCCCCHHHHHHHHhCCC
Q 020435          273 KAKSDIPILLKRYMDKE  289 (326)
Q Consensus       273 ~~~~~~~~~~~l~~~g~  289 (326)
                      ..++++.++++++++||
T Consensus       160 ~~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         160 KSVESVPKLVSEYMSKK  176 (176)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHcCC
Confidence            66778999999999885

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.94  E-value=2.2e-27  Score=193.15  Aligned_cols=171  Identities=27%  Similarity=0.410  Sum_probs=147.4

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcC
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  191 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~  191 (326)
                      +|+|+|+.++++++|||++ .+.+++++|++|||+|+|++|++++|+||.+|+.+|+++++++++++.++++|+++++++
T Consensus         1 ip~e~A~~l~~~~~ta~~a-~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHG-AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHH-HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred             CCHHHHHHhhhHHHHHHHH-HHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence            5789999999999999997 477999999999999999999999999999998789999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHH--HHhcCCEEEeee
Q 020435          192 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE--VLHSGKILMGSL  268 (326)
Q Consensus       192 ~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~--~~~~~~~i~~~~  268 (326)
                      .+   +++.+.+++++++ |+|+||||+|++..++.++++++++ |+++.+|...+.....++...  ...+++++.++.
T Consensus        80 ~~---~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~  155 (174)
T d1jqba2          80 KN---GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGL  155 (174)
T ss_dssp             GG---SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBC
T ss_pred             cc---hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcC-CEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEec
Confidence            88   8899999999998 9999999999988799999999998 999999986655554443322  344688998886


Q ss_pred             ccCCCCCCCHHHHHHHHhCCC
Q 020435          269 FGGLKAKSDIPILLKRYMDKE  289 (326)
Q Consensus       269 ~~~~~~~~~~~~~~~l~~~g~  289 (326)
                      .+..  +..+++++++++.|+
T Consensus       156 ~~~~--r~~~e~l~~li~~gk  174 (174)
T d1jqba2         156 CPGG--RLRAERLRDMVVYNR  174 (174)
T ss_dssp             CCCH--HHHHHHHHHHHHTTS
T ss_pred             CCCC--cccHHHHHHHHHcCC
Confidence            5432  345677888888874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.94  E-value=6.7e-27  Score=190.07  Aligned_cols=172  Identities=36%  Similarity=0.718  Sum_probs=147.1

Q ss_pred             CccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCC
Q 020435          113 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  192 (326)
Q Consensus       113 s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~  192 (326)
                      ++++||.+.|.+.|+|+++.+.+++++|++|||+|+|++|++++|++|++|+.+|++++.++++++.++++|+++++++.
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            46889999999999999988999999999999999999999999999999998899999999999999999999999865


Q ss_pred             CCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccC
Q 020435          193 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  271 (326)
Q Consensus       193 ~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  271 (326)
                      +  .++..+.+.+.+.+ |+|++|||+|.+..++.+++++++++|+++.+|..  ....+++...++. +.++.|++.|+
T Consensus        82 ~--~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~--~~~~~i~~~~~~~-~k~i~Gs~~Gs  156 (174)
T d1e3ia2          82 E--LDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK--VDEMTIPTVDVIL-GRSINGTFFGG  156 (174)
T ss_dssp             G--CSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCS--SSEEEEEHHHHHT-TCEEEECSGGG
T ss_pred             c--chhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCC--CCccccchHHHhc-cCEEEEEEeeC
Confidence            4  13344445555544 99999999999998999999999832899999975  3556777666655 67899999888


Q ss_pred             CCCCCCHHHHHHHHhCCC
Q 020435          272 LKAKSDIPILLKRYMDKE  289 (326)
Q Consensus       272 ~~~~~~~~~~~~l~~~g~  289 (326)
                      ...++++.++++++++|+
T Consensus       157 ~~~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         157 WKSVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CChHHHHHHHHHHHHCcC
Confidence            776778899999999884

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=5.9e-27  Score=192.37  Aligned_cols=171  Identities=23%  Similarity=0.307  Sum_probs=147.0

Q ss_pred             ccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCC
Q 020435          114 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  193 (326)
Q Consensus       114 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~  193 (326)
                      ++.+|++.|..+|||+++.+..++++|++|||+|+|++|++++|+|+++|+.+|+++++++++++.++++|+++++++.+
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~   82 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE   82 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence            35677888899999999888899999999999999999999999999999878999999999999999999999999887


Q ss_pred             CCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHH-HHhcCCEEEeeeccC
Q 020435          194 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE-VLHSGKILMGSLFGG  271 (326)
Q Consensus       194 ~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~  271 (326)
                      ....+..+.+.+.+.+ |+|+||||+|++..++.++++++++ |+++.+|...+..+.+++... ++.|++++.|++..+
T Consensus        83 ~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~  161 (182)
T d1vj0a2          83 TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD  161 (182)
T ss_dssp             SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC
T ss_pred             cchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCC
Confidence            2222345567788888 9999999999988799999999998 999999976666677777644 667899999997554


Q ss_pred             CCCCCCHHHHHHHHhCC
Q 020435          272 LKAKSDIPILLKRYMDK  288 (326)
Q Consensus       272 ~~~~~~~~~~~~l~~~g  288 (326)
                         .+++++++++++++
T Consensus       162 ---~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         162 ---TSHFVKTVSITSRN  175 (182)
T ss_dssp             ---HHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHHHC
Confidence               46789999998876

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=5.8e-27  Score=190.30  Aligned_cols=168  Identities=24%  Similarity=0.299  Sum_probs=152.7

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEc
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  190 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~  190 (326)
                      +|+.|||+++|++.|||+++ +..+++++++|||+|+ |++|++++|++++.|..+|+++++++++.+.++++|++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            57899999999999999975 7789999999999996 999999999999999769999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeec
Q 020435          191 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  269 (326)
Q Consensus       191 ~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~  269 (326)
                      +.+   .++.+.+++.+.+ ++|++|||.+++..++.++++++++ |+++.+|...  .+.+++...++.|++++.|++.
T Consensus        80 ~~~---~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~i~i~Gs~~  153 (170)
T d1jvba2          80 ASM---QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFG--ADLHYHAPLITLSEIQFVGSLV  153 (170)
T ss_dssp             TTT---SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSC--CCCCCCHHHHHHHTCEEEECCS
T ss_pred             cCC---cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccC-CEEEEecccc--CccccCHHHHHhCCcEEEEEec
Confidence            888   8899999999888 9999999999998889999999998 9999999754  4578888888999999999976


Q ss_pred             cCCCCCCCHHHHHHHHhCCC
Q 020435          270 GGLKAKSDIPILLKRYMDKE  289 (326)
Q Consensus       270 ~~~~~~~~~~~~~~l~~~g~  289 (326)
                      ++   +++++++++++++|+
T Consensus       154 ~~---~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         154 GN---QSDFLGIMRLAEAGK  170 (170)
T ss_dssp             CC---HHHHHHHHHHHHTTS
T ss_pred             CC---HHHHHHHHHHHHcCC
Confidence            54   578999999999985

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=2.4e-27  Score=194.90  Aligned_cols=173  Identities=23%  Similarity=0.267  Sum_probs=146.1

Q ss_pred             cccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCC
Q 020435          115 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  193 (326)
Q Consensus       115 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~  193 (326)
                      +|||+++++++|||+++++.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.++++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence            5899999999999999999999999999999986 9999999999999999 9999999999999999999999999988


Q ss_pred             CCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccCC
Q 020435          194 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  272 (326)
Q Consensus       194 ~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (326)
                         .++.+.+++.+++ |+|++|||+|+.. ++.++++|+++ |+++.+|.........+.... +.+++++.++.....
T Consensus        80 ---~~~~~~v~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  153 (183)
T d1pqwa_          80 ---VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPG-GRFIELGKKDVYADASLGLAA-LAKSASFSVVDLDLN  153 (183)
T ss_dssp             ---STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEE-EEEEECSCGGGTTTCEEEGGG-GTTTCEEEECCHHHH
T ss_pred             ---cCHHHHHHHHhCCCCEEEEEecccchH-HHHHHHHhcCC-CEEEEEccCCCCCCcccchHH-HhCCcEEEEEEccce
Confidence               8999999999988 9999999999976 99999999998 999999865433333333332 356888887743221


Q ss_pred             C------CCCCHHHHHHHHhCCCCCCCc
Q 020435          273 K------AKSDIPILLKRYMDKELELDK  294 (326)
Q Consensus       273 ~------~~~~~~~~~~l~~~g~~~~~~  294 (326)
                      .      .++.++++++++++|++++.|
T Consensus       154 ~~~~~~~~~~~~~~v~~~i~~G~i~p~P  181 (183)
T d1pqwa_         154 LKLQPARYRQLLQHILQHVADGKLEVLP  181 (183)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             eccCHHHHHHHHHHHHHHHHCCCCceeC
Confidence            1      134588889999999887643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.5e-26  Score=183.82  Aligned_cols=168  Identities=19%  Similarity=0.336  Sum_probs=145.3

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcC
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  191 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~  191 (326)
                      +|+|+||++. ++++||++ ++++++++|++|+|+|+|++|++++|+|+++|+.+|++++++++++++++++|++++++.
T Consensus         1 vS~e~Aal~e-pla~a~~a-~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHA-CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHH-HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHH-HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence            5789988775 89999997 577899999999999999999999999999999889999999999999999999999998


Q ss_pred             CCCCCccHHHHHHHh---cCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeee
Q 020435          192 KNCGDKSVSQIIIDM---TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  268 (326)
Q Consensus       192 ~~~~~~~~~~~i~~~---~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~  268 (326)
                      .+   ++..+..+..   .+.++|+||||+|++..++.++++++++ |+++++|...  ...++++..++.|++++.|++
T Consensus        79 ~~---~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~--~~~~~~~~~~~~k~l~i~Gs~  152 (171)
T d1pl8a2          79 SK---ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS--EMTTVPLLHAAIREVDIKGVF  152 (171)
T ss_dssp             SS---CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC--SCCCCCHHHHHHTTCEEEECC
T ss_pred             cc---cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCC-CEEEEEecCC--CCCccCHHHHHHCCcEEEEEe
Confidence            87   5554443332   3349999999999998899999999998 9999999754  456788889999999999985


Q ss_pred             ccCCCCCCCHHHHHHHHhCCCCC
Q 020435          269 FGGLKAKSDIPILLKRYMDKELE  291 (326)
Q Consensus       269 ~~~~~~~~~~~~~~~l~~~g~~~  291 (326)
                      .    +.++++++++++++|+++
T Consensus       153 ~----~~~~~~~al~li~~gkid  171 (171)
T d1pl8a2         153 R----YCNTWPVAISMLASKSVN  171 (171)
T ss_dssp             S----CSSCHHHHHHHHHTTSCC
T ss_pred             C----CHhHHHHHHHHHHcCCCC
Confidence            2    246899999999999764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=3.1e-26  Score=186.24  Aligned_cols=165  Identities=21%  Similarity=0.350  Sum_probs=145.9

Q ss_pred             ccccccccchhhhhhhhhhhhc-ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCC
Q 020435          114 PNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  192 (326)
Q Consensus       114 ~~~aa~l~~~~~ta~~~l~~~~-~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~  192 (326)
                      +.++|+++++++|||+++.+.. .+++|++|||+|+|++|++++|+++++|+.+|+++++++++++.++++|+++++++.
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~   85 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR   85 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence            4688999999999999987765 489999999999999999999999999987889999999999999999999999987


Q ss_pred             CCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccC
Q 020435          193 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  271 (326)
Q Consensus       193 ~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  271 (326)
                      +   + ..+.+.+.+.+ ++|+||||+|+...++.++++++++ |+++++|..   ...+++...++.|++++.|++.++
T Consensus        86 ~---~-~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~---~~~~~~~~~l~~k~~~i~Gs~~~~  157 (172)
T d1h2ba2          86 R---D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYG---GELRFPTIRVISSEVSFEGSLVGN  157 (172)
T ss_dssp             S---C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEE-EEEEECCCS---SCCCCCHHHHHHTTCEEEECCSCC
T ss_pred             c---c-HHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCC-CEEEEEeCc---ccccCCHHHHHhCCcEEEEEEecC
Confidence            6   4 45666677777 9999999999998799999999998 999999863   346788888999999999997655


Q ss_pred             CCCCCCHHHHHHHHhCCC
Q 020435          272 LKAKSDIPILLKRYMDKE  289 (326)
Q Consensus       272 ~~~~~~~~~~~~l~~~g~  289 (326)
                         +++++++++++++|+
T Consensus       158 ---~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         158 ---YVELHELVTLALQGK  172 (172)
T ss_dssp             ---HHHHHHHHHHHHTTS
T ss_pred             ---HHHHHHHHHHHHcCC
Confidence               468999999999985

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.94  E-value=6e-26  Score=185.28  Aligned_cols=174  Identities=39%  Similarity=0.671  Sum_probs=143.9

Q ss_pred             CccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCC
Q 020435          113 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  192 (326)
Q Consensus       113 s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~  192 (326)
                      |+++||+++|.++|||+++++.+++++|++|||+|+|++|++++++++..|+.+|+++++++++++.++++|+++++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            57889999999999999999999999999999999999999999999999977999999999999999999999999865


Q ss_pred             CCCCccHHHHHHHhcC-CCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccC
Q 020435          193 NCGDKSVSQIIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  271 (326)
Q Consensus       193 ~~~~~~~~~~i~~~~~-~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  271 (326)
                      +  .++..+...+.+. +|+|++|||.|.+..+..++..++++ ++.+.++...+..........++.+++++.|++.++
T Consensus        82 ~--~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~  158 (176)
T d2jhfa2          82 D--YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEA-YGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGG  158 (176)
T ss_dssp             G--CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGG
T ss_pred             C--chhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcC-CcceEEecCCCCcccccccHHHHhCCCEEEEEEEeC
Confidence            4  1344444444444 49999999999999888999999996 666666554444443333334556799999999888


Q ss_pred             CCCCCCHHHHHHHHhCCC
Q 020435          272 LKAKSDIPILLKRYMDKE  289 (326)
Q Consensus       272 ~~~~~~~~~~~~l~~~g~  289 (326)
                      ...++++.++++++.+|+
T Consensus       159 ~~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         159 FKSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHCcC
Confidence            766778999999998884

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.93  E-value=4.8e-26  Score=186.82  Aligned_cols=165  Identities=18%  Similarity=0.189  Sum_probs=141.5

Q ss_pred             ccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCC
Q 020435          118 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  196 (326)
Q Consensus       118 a~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  196 (326)
                      +++.++++|||+++.+.+++++|++|||+|+ |++|++++|+||..|+ +|+++++++++.++++++|+++++++.+   
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~---   83 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT---   83 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS---
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc---
Confidence            4677899999999999999999999999987 8999999999999999 9999999999999999999999999988   


Q ss_pred             ccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC-----CCCcccccHHHHHhcCCEEEeeecc
Q 020435          197 KSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ-----PGSQLSLSSFEVLHSGKILMGSLFG  270 (326)
Q Consensus       197 ~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~  270 (326)
                      +++.+.+.+.+.+ |+|+||||+|.+. ++.++++++++ |+++.+|...     ...+..+++..++.|++++.|++..
T Consensus        84 ~~~~~~~~~~~~~~Gvd~v~D~vG~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~  161 (182)
T d1v3va2          84 VNSLEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVY  161 (182)
T ss_dssp             CSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGG
T ss_pred             ccHHHHHHHHhhcCCCceeEEecCchh-hhhhhhhccCC-CeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEe
Confidence            8888888888777 9999999999876 99999999998 9999998532     2234456777888999999999776


Q ss_pred             CCCC---CCCHHHHHHHHhCC
Q 020435          271 GLKA---KSDIPILLKRYMDK  288 (326)
Q Consensus       271 ~~~~---~~~~~~~~~l~~~g  288 (326)
                      .+..   .+.++++++++++|
T Consensus       162 ~~~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         162 RWQGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             GCCHHHHHHHHHHHHHHHHTT
T ss_pred             ccChHHHHHHHHHHHHHHhCc
Confidence            5431   12367777777765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.93  E-value=5.9e-26  Score=184.96  Aligned_cols=171  Identities=37%  Similarity=0.748  Sum_probs=145.9

Q ss_pred             CccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCC
Q 020435          113 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  192 (326)
Q Consensus       113 s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~  192 (326)
                      |+++||.++|.+.|+|+++.+.+++++|++|+|+|+|++|++++|++++.|+.+|++++.++++++.++++|+++++|+.
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~   82 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK   82 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence            57999999999999999988999999999999999999999999999999977999999999999999999999999977


Q ss_pred             CCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccC
Q 020435          193 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  271 (326)
Q Consensus       193 ~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  271 (326)
                      +  .+...+.+.+.+.+ |+|++||+.+.+..+..++..+.+++|+++.+|.........+++..++ ++.++.|++.|+
T Consensus        83 ~--~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~  159 (176)
T d1d1ta2          83 D--STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLF-TGRTWKGCVFGG  159 (176)
T ss_dssp             G--CSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGG
T ss_pred             c--cchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHh-CCCEEEEEEEeC
Confidence            6  23345667777766 9999999999998777777766543399999998766666777766555 488999999888


Q ss_pred             CCCCCCHHHHHHHHh
Q 020435          272 LKAKSDIPILLKRYM  286 (326)
Q Consensus       272 ~~~~~~~~~~~~l~~  286 (326)
                      ...++|+.++++++.
T Consensus       160 ~~~~~dip~li~~~~  174 (176)
T d1d1ta2         160 LKSRDDVPKLVTEFL  174 (176)
T ss_dssp             CCHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHh
Confidence            766778888887764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=8.3e-26  Score=182.65  Aligned_cols=165  Identities=22%  Similarity=0.334  Sum_probs=146.2

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcC
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  191 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~  191 (326)
                      +|+++||.++|+++|||+++ +.+++++|++|+|+|+|++|++++|+||.+|+ +|++++++++++++++++|+++++++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence            57899999999999999975 66899999999999999999999999999998 99999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccC
Q 020435          192 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  271 (326)
Q Consensus       192 ~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  271 (326)
                      .+   +++.+.+++.+. +.|.++++.+++..+..++++++++ |+++.+|...  ...+++...++.|++++.|++.++
T Consensus        79 ~~---~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~~~i~Gs~~~~  151 (166)
T d1llua2          79 RQ---EDPVEAIQRDIG-GAHGVLVTAVSNSAFGQAIGMARRG-GTIALVGLPP--GDFPTPIFDVVLKGLHIAGSIVGT  151 (166)
T ss_dssp             TT---SCHHHHHHHHHS-SEEEEEECCSCHHHHHHHHTTEEEE-EEEEECCCCS--SEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             cc---hhHHHHHHHhhc-CCcccccccccchHHHHHHHHhcCC-cEEEEEEecC--CCccCCHHHHHhCCcEEEEEeecC
Confidence            88   888888887665 5666677777777799999999998 9999999753  467888889999999999997554


Q ss_pred             CCCCCCHHHHHHHHhCC
Q 020435          272 LKAKSDIPILLKRYMDK  288 (326)
Q Consensus       272 ~~~~~~~~~~~~l~~~g  288 (326)
                         +++++++++++++|
T Consensus       152 ---~~d~~e~l~l~~~G  165 (166)
T d1llua2         152 ---RADLQEALDFAGEG  165 (166)
T ss_dssp             ---HHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHCc
Confidence               56899999999987

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3.6e-26  Score=187.14  Aligned_cols=141  Identities=16%  Similarity=0.240  Sum_probs=126.7

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEc
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  190 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~  190 (326)
                      +|+++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            5899999999999999999988899999999999976 8899999999999999 9999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHh
Q 020435          191 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH  259 (326)
Q Consensus       191 ~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~  259 (326)
                      +++   +++.+.++++|++ ++|+++|+.+.+. +..++.+++++ |+++.++... .....++...+..
T Consensus        80 ~~~---~d~~~~v~~~t~g~g~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~  143 (179)
T d1qora2          80 YRE---EDLVERLKEITGGKKVRVVYDSVGRDT-WERSLDCLQRR-GLMVSFGNSS-GAVTGVNLGILNQ  143 (179)
T ss_dssp             TTT---SCHHHHHHHHTTTCCEEEEEECSCGGG-HHHHHHTEEEE-EEEEECCCTT-CCCCCBCTHHHHH
T ss_pred             CCC---CCHHHHHHHHhCCCCeEEEEeCccHHH-HHHHHHHHhcC-Ceeeeccccc-CCccccchhhhhc
Confidence            988   8999999999988 9999999999887 99999999998 9999998753 3344444444443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=2.1e-26  Score=186.77  Aligned_cols=171  Identities=13%  Similarity=0.111  Sum_probs=135.3

Q ss_pred             CCccccccccchhhhhhhh---hhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcE
Q 020435          112 VPPNRACLLSCGVSTGVGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  187 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~---l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~  187 (326)
                      +|++|||+++++++|||++   +.+..+.++|++|||+|+ |++|.+++|+||..|+ +|+++++++++.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            6899999999999999966   445688899999999986 9999999999999999 9999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEee
Q 020435          188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  267 (326)
Q Consensus       188 vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~  267 (326)
                      ++|+++    .+.+.++...++++|+|||++|+.. +..++++|+++ |+++.+|.. .....+++...++.|+++++|.
T Consensus        80 vi~~~~----~~~~~~~~~~~~gvD~vid~vgg~~-~~~~l~~l~~~-Griv~~G~~-~g~~~~~~~~~~~~k~~~i~Gv  152 (176)
T d1xa0a2          80 VLARED----VMAERIRPLDKQRWAAAVDPVGGRT-LATVLSRMRYG-GAVAVSGLT-GGAEVPTTVHPFILRGVSLLGI  152 (176)
T ss_dssp             EEECC-------------CCSCCEEEEEECSTTTT-HHHHHHTEEEE-EEEEECSCC-SSSCCCCCSHHHHHTTCEEEEC
T ss_pred             eeecch----hHHHHHHHhhccCcCEEEEcCCchh-HHHHHHHhCCC-ceEEEeecc-cCcccCCCHHHHHHCCcEEEEE
Confidence            999865    3344444333449999999999998 99999999998 999999985 4566788888999999999996


Q ss_pred             eccCCCCCCCHHHHHHHHhCCCCCC
Q 020435          268 LFGGLKAKSDIPILLKRYMDKELEL  292 (326)
Q Consensus       268 ~~~~~~~~~~~~~~~~l~~~g~~~~  292 (326)
                      ..... ..+....+++.+. ++++|
T Consensus       153 ~~~~~-~~~~~~~~~~~la-g~lkP  175 (176)
T d1xa0a2         153 DSVYC-PMDLRLRIWERLA-GDLKP  175 (176)
T ss_dssp             CSSSC-CHHHHHHHHHHHH-TTTCC
T ss_pred             eCCcC-CHHHHHHHHHHHh-cccCC
Confidence            42221 1233444454443 55554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.93  E-value=6.6e-25  Score=177.98  Aligned_cols=168  Identities=21%  Similarity=0.324  Sum_probs=141.2

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcC
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  191 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~  191 (326)
                      +|+|+||++. +++|||++ ++.+++++|++|||+|+|++|++++|+||+.|+ +|+++++++++.+.++++|+++.++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a-~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHA-CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHH-HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHH-HHHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence            5789998875 88999997 477899999999999999999999999999999 99999999999999999999887755


Q ss_pred             CCCC--CccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeec
Q 020435          192 KNCG--DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  269 (326)
Q Consensus       192 ~~~~--~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~  269 (326)
                      +...  ..+..+.+.+..++++|+||||+|++..++.++++++++ |+++.+|...  .+.++++..++.|++++.|++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~--~~~~~~~~~~~~k~i~i~gs~~  154 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS--QMVTVPLVNACAREIDIKSVFR  154 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCS--SCCCCCHHHHHTTTCEEEECCS
T ss_pred             cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcC-CceEEEecCC--CCCCcCHHHHHHCCCEEEEEEC
Confidence            4311  122334455555559999999999998899999999998 9999999753  4567888888999999999852


Q ss_pred             cCCCCCCCHHHHHHHHhCCC
Q 020435          270 GGLKAKSDIPILLKRYMDKE  289 (326)
Q Consensus       270 ~~~~~~~~~~~~~~l~~~g~  289 (326)
                          +.++++++++++++|+
T Consensus       155 ----~~~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         155 ----YCNDYPIALEMVASGR  170 (170)
T ss_dssp             ----CSSCHHHHHHHHHTTS
T ss_pred             ----CHHHHHHHHHHHHcCC
Confidence                2468999999999985

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.93  E-value=1.7e-25  Score=182.38  Aligned_cols=173  Identities=41%  Similarity=0.679  Sum_probs=143.6

Q ss_pred             CccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCC
Q 020435          113 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  192 (326)
Q Consensus       113 s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~  192 (326)
                      |+++||++.|++.|+|+++.+.+++++|++|+|+|+|++|++++++++..+..+|+++++++++++.++++|+++++|+.
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            57899999999999999998999999999999999999999999999999887999999999999999999999999976


Q ss_pred             CCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccC
Q 020435          193 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  271 (326)
Q Consensus       193 ~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  271 (326)
                      +  ..+..+.+.+.+.+ |+|++||++|....+..+..+++++ +..+.++...+ .........++.+++++.|++.++
T Consensus        82 ~--~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g-~~~~~~~g~~~-~~~~~~~~~~~~~~~~i~Gs~~G~  157 (175)
T d1cdoa2          82 D--HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKG-WGVSVLVGWTD-LHDVATRPIQLIAGRTWKGSMFGG  157 (175)
T ss_dssp             G--CSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCS-SSCEEECHHHHHTTCEEEECSGGG
T ss_pred             C--cchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCC-CcceeEEEecC-CcccCccHHHHHCCcEEEEEEEeC
Confidence            6  23455666666655 9999999999998788888888776 55554443333 233334444556789999999888


Q ss_pred             CCCCCCHHHHHHHHhCCC
Q 020435          272 LKAKSDIPILLKRYMDKE  289 (326)
Q Consensus       272 ~~~~~~~~~~~~l~~~g~  289 (326)
                      ...++++.++++++++|+
T Consensus       158 ~~~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         158 FKGKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHHHcCC
Confidence            766778999999999885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=2.9e-25  Score=179.71  Aligned_cols=168  Identities=21%  Similarity=0.401  Sum_probs=147.9

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcC
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  191 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~  191 (326)
                      +|+++||+++++++|||+++ +..+++++++|||+|+|++|++++|+++..|+ +|++++++++++++++++|+++++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence            58999999999999999975 57889999999999999999999999999999 89999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeeccC
Q 020435          192 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  271 (326)
Q Consensus       192 ~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  271 (326)
                      .+   +++.+.+++.+.+. |.++++.++...+..++++++++ |+++.+|..  ..+..++...++.+++++.|++.+.
T Consensus        79 ~~---~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~a~~~l~~~-G~i~~~g~~--~~~~~~~~~~~~~~~~~i~gs~~~~  151 (168)
T d1rjwa2          79 LK---EDAAKFMKEKVGGV-HAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLP--PEEMPIPIFDTVLNGIKIIGSIVGT  151 (168)
T ss_dssp             TT---SCHHHHHHHHHSSE-EEEEESSCCHHHHHHHHHHEEEE-EEEEECCCC--SSEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             cc---chhhhhcccccCCC-ceEEeecCCHHHHHHHHHHhccC-CceEecccc--cCCCCCCHHHHHHCCcEEEEEeeCC
Confidence            88   88888899888754 44455666677799999999998 999999975  4566788888899999999987543


Q ss_pred             CCCCCCHHHHHHHHhCCCCC
Q 020435          272 LKAKSDIPILLKRYMDKELE  291 (326)
Q Consensus       272 ~~~~~~~~~~~~l~~~g~~~  291 (326)
                         +++++++++++++|+++
T Consensus       152 ---~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         152 ---RKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             ---HHHHHHHHHHHHTTSCC
T ss_pred             ---HHHHHHHHHHHHhCCCC
Confidence               57899999999999763

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.92  E-value=2.7e-25  Score=184.57  Aligned_cols=145  Identities=31%  Similarity=0.439  Sum_probs=121.6

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      |..++..+|.++|||++|+|+++|+++++|++||||++.+...|+.|++|+.+++++|.........+....|..+ ...
T Consensus        55 g~~~~~~~p~i~GhE~~G~v~~vG~~v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~-~~~  133 (199)
T d1cdoa1          55 EGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETR-FTC  133 (199)
T ss_dssp             TTCCTTSCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCC-EEE
T ss_pred             hcccccccccccccccceEEEEEcCCCceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccc-eee
Confidence            3456678999999999999999999999999999999999999999999999999999876543223333333222 123


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEE
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  146 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~  146 (326)
                      .|..+.+++++|+|+||++++++.++++|++++++++|++.+++.|+++++....+.+.|++|||+
T Consensus       134 ~g~~~~~~~~~Ggfaey~~v~~~~~~~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         134 KGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             TTEEEEEGGGTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             ccceeecccccCCceEEEEEchHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            444555666778999999999999999999999999999999999999998888888999999984

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.1e-25  Score=179.55  Aligned_cols=164  Identities=20%  Similarity=0.289  Sum_probs=136.4

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcC
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  191 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~  191 (326)
                      .+++.+|.+.|...|+|+++ +.+++++|++|||+|+|++|++++|+||.+|+ +++++++++++.++++++|+++++++
T Consensus         4 ~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~   81 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNS   81 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEET
T ss_pred             ccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEEC
Confidence            45677888889999999976 67999999999999999999999999999999 88899999999999999999999998


Q ss_pred             CCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeecc
Q 020435          192 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  270 (326)
Q Consensus       192 ~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~  270 (326)
                      .+   ++..     .... ++|++|||+|.+..+..++++++++ |+++++|.. +.....++...++.|++++.|+..+
T Consensus        82 ~~---~~~~-----~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~-~~~~~~~~~~~l~~k~~~i~Gs~~~  151 (168)
T d1uufa2          82 RN---ADEM-----AAHLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAP-ATPHKSPEVFNLIMKRRAIAGSMIG  151 (168)
T ss_dssp             TC---HHHH-----HTTTTCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEEECCSC
T ss_pred             ch---hhHH-----HHhcCCCceeeeeeecchhHHHHHHHHhcC-CEEEEeccC-CCCcccccHHHHHHCCcEEEEEeec
Confidence            87   4332     2223 8999999999887799999999998 999999974 3445567778888899999999765


Q ss_pred             CCCCCCCHHHHHHHHhCCCC
Q 020435          271 GLKAKSDIPILLKRYMDKEL  290 (326)
Q Consensus       271 ~~~~~~~~~~~~~l~~~g~~  290 (326)
                      +   ++++++++++++++++
T Consensus       152 ~---~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         152 G---IPETQEMLDFCAEHGI  168 (168)
T ss_dssp             C---HHHHHHHHHHHHHHTC
T ss_pred             C---HHHHHHHHHHHHHcCC
Confidence            5   5789999999988753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.9e-25  Score=181.26  Aligned_cols=147  Identities=20%  Similarity=0.341  Sum_probs=123.1

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEc
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  190 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~  190 (326)
                      +|+++||+++++++|||+++ +.+++++|++|||+|+ |++|++++|+||+.|+ +|+++++++++.+.++++|+++++|
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence            58899999999999999986 4589999999999986 9999999999999999 9999999999999999999999998


Q ss_pred             CCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeec
Q 020435          191 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  269 (326)
Q Consensus       191 ~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~  269 (326)
                      +.+        ...+.+.+ |+|+||||.|. . +..++++++++ |+++.+|... ....+++...++.|++++.|++.
T Consensus        79 ~~~--------~~~~~~~~~g~D~v~d~~G~-~-~~~~~~~l~~~-G~~v~~G~~~-g~~~~~~~~~~~~k~~~i~g~~~  146 (171)
T d1iz0a2          79 YAE--------VPERAKAWGGLDLVLEVRGK-E-VEESLGLLAHG-GRLVYIGAAE-GEVAPIPPLRLMRRNLAVLGFWL  146 (171)
T ss_dssp             GGG--------HHHHHHHTTSEEEEEECSCT-T-HHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCH
T ss_pred             hhh--------hhhhhhccccccccccccch-h-HHHHHHHHhcC-CcEEEEeCCC-CCCCCccHHHHHHCCcEEEEEeC
Confidence            754        23344445 99999999884 4 78999999998 9999998743 34567778888899999999976


Q ss_pred             cCC
Q 020435          270 GGL  272 (326)
Q Consensus       270 ~~~  272 (326)
                      ..+
T Consensus       147 ~~~  149 (171)
T d1iz0a2         147 TPL  149 (171)
T ss_dssp             HHH
T ss_pred             cCh
Confidence            543

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.91  E-value=1.3e-25  Score=183.38  Aligned_cols=121  Identities=26%  Similarity=0.372  Sum_probs=110.1

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCccccccCCc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGE   83 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~   83 (326)
                      +.++|+++|||++|+|+++|++|++|++||||++.+...|+.|++|+.++.++|.....   .+. ..+|          
T Consensus        54 ~~~~p~i~GhE~~G~Vv~vG~~v~~~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~G----------  120 (178)
T d1e3ja1          54 IVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDDG----------  120 (178)
T ss_dssp             BCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBCC----------
T ss_pred             cccCCeeeccccceEEEecCcccCCCCCCCEEEECcccccCCccccccCCccccccccc---eecccccc----------
Confidence            45689999999999999999999999999999999999999999999999999987775   333 3445          


Q ss_pred             ccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc
Q 020435           84 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  148 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga  148 (326)
                               +|+||+++++++++++|+++|+++|+++++++.|||++ ++.+++++|++|||+|+
T Consensus       121 ---------~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~a-~~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         121 ---------NLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDA-FEAARKKADNTIKVMIS  175 (178)
T ss_dssp             ---------SCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHHH-HHHHHHCCTTCSEEEEE
T ss_pred             ---------ccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHHH-HHHhCCCCCCEEEEEcc
Confidence                     99999999999999999999999999999999999997 57899999999999974

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.91  E-value=5.8e-25  Score=181.34  Aligned_cols=174  Identities=15%  Similarity=0.134  Sum_probs=140.3

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCCCEEEEE-cc-CHHHHHHHHHHHHcCCCEEEEEcCChh----HHHHHHhcCC
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-GL-GSIGLAVAEGARLCGATRIIGVDVISE----KFEIGKRFGV  185 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~-Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~----~~~~~~~~g~  185 (326)
                      +|+++||+++++++|||+++.+.+++++|++|+|+ |+ |++|++++|+||++|+ +||+++++++    +.+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            58999999999999999999999999999999997 55 9999999999999999 8998876654    3456788999


Q ss_pred             cEEEcCCCCCCccHHHHHHHhc---CCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCC
Q 020435          186 TEFVNSKNCGDKSVSQIIIDMT---DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  262 (326)
Q Consensus       186 ~~vi~~~~~~~~~~~~~i~~~~---~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  262 (326)
                      ++++++++.....+.+.+++.+   ++++|++|||+|++. +..++++|+++ |+++.+|.. ...+.+++...++.|++
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~-~~~~~~~l~~~-G~~v~~G~~-~~~~~~~~~~~l~~k~~  156 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNN-GLMLTYGGM-SFQPVTIPTSLYIFKNF  156 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTT-CEEEECCCC-SSCCEEECHHHHHHSCC
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcch-hhhhhhhhcCC-cEEEEECCc-cCCCccCcHHHHHHCCc
Confidence            9999875412244555566554   348999999999888 89999999998 999999864 34567888888889999


Q ss_pred             EEEeeeccCCCC------CCCHHHHHHHHhCCC
Q 020435          263 ILMGSLFGGLKA------KSDIPILLKRYMDKE  289 (326)
Q Consensus       263 ~i~~~~~~~~~~------~~~~~~~~~l~~~g~  289 (326)
                      ++.|++.+.+..      ++.+.++++++++|+
T Consensus       157 ~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         157 TSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             EEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            999987653211      134677777777774

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.6e-25  Score=181.18  Aligned_cols=165  Identities=19%  Similarity=0.206  Sum_probs=138.0

Q ss_pred             CccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCC
Q 020435          113 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  192 (326)
Q Consensus       113 s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~  192 (326)
                      |++.||.+.|...|||+++ +.+++++|++|||+|+|++|++++|+||.+|+ +|+++++++++.+.++++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeecc
Confidence            4577899999999999976 56899999999999999999999999999999 899999999999999999999999876


Q ss_pred             CCCCccHHHHHHHhcCCCccEEEEcCCcHH--HHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeeecc
Q 020435          193 NCGDKSVSQIIIDMTDGGADYCFECVGLAS--LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  270 (326)
Q Consensus       193 ~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~  270 (326)
                      +  +.++.+    ...+++|.++||.+...  .+..++++++++ |+++.+|...  ....++...++.|++++.|+..+
T Consensus        80 ~--~~~~~~----~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~~~i~Gs~~g  150 (168)
T d1piwa2          80 E--EGDWGE----KYFDTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPE--QHEMLSLKPYGLKAVSISYSALG  150 (168)
T ss_dssp             G--TSCHHH----HSCSCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCC--SSCCEEECGGGCBSCEEEECCCC
T ss_pred             c--hHHHHH----hhhcccceEEEEecCCccchHHHHHHHhhcc-ceEEEecccc--ccccccHHHHHhCCcEEEEEeeC
Confidence            5  123322    22348999999988643  367889999998 9999999754  34456666678899999999766


Q ss_pred             CCCCCCCHHHHHHHHhCCCCC
Q 020435          271 GLKAKSDIPILLKRYMDKELE  291 (326)
Q Consensus       271 ~~~~~~~~~~~~~l~~~g~~~  291 (326)
                      +   +++++++++|+++|+++
T Consensus       151 ~---~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         151 S---IKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             C---HHHHHHHHHHHHHTTCC
T ss_pred             C---HHHHHHHHHHHHhCCCC
Confidence            5   57899999999999764

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.91  E-value=9.2e-25  Score=176.97  Aligned_cols=117  Identities=27%  Similarity=0.457  Sum_probs=108.6

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      .+.+|+++|||++|+|+++|++++++++||||++.+...|+.|..|+.+++++|.....   .|+..+|           
T Consensus        54 ~~~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~~~G-----------  119 (171)
T d1h2ba1          54 QPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-----------  119 (171)
T ss_dssp             CCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-----------
T ss_pred             CCccccccceeeeeeeecccCCCCcCCCCCEEEEcCccCCCCccccccccccccccccc---ceeeccc-----------
Confidence            45789999999999999999999999999999999999999999999999999988876   7777777           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEE
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI  145 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI  145 (326)
                              +|+||+.+++++++++|+++|++.++++.++++|||+++ +.+++ .|++|||
T Consensus       120 --------~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         120 --------GFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             --------SSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             --------ccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence                    999999999999999999999998998888999999975 66777 8999998

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.91  E-value=1.7e-24  Score=178.73  Aligned_cols=142  Identities=25%  Similarity=0.419  Sum_probs=110.1

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCc-ccccc
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS-RFKDL   80 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~-~~~~~   80 (326)
                      .++ .++|+|+|||++|+|+++|++|++|++||||+..+ ..|++|.+|+.+++++|.........|...+|.. .....
T Consensus        51 ~~~-~~~P~i~GHE~~G~V~~vG~~v~~~~vGDrVv~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~  128 (194)
T d1f8fa1          51 KYP-VPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHD  128 (194)
T ss_dssp             SSC-CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC---
T ss_pred             ccc-ccCCcccccceEEEeeecCccceeEccCceeeeec-ccccCChhhhCCCcccccccccceeccccccceeeeecCC
Confidence            444 57999999999999999999999999999996655 4899999999999999987533223444445422 22334


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHH
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR  160 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~  160 (326)
                      .+....+++++|+|+||+++++..++++|++++++++                         ++|.|+|++|++++|+++
T Consensus       129 ~~~~~~~~~~~g~fae~~~v~~~~~~~ip~~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~  183 (194)
T d1f8fa1         129 QGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQL-------------------------VKFYAFDEINQAAIDSRK  183 (194)
T ss_dssp             ---CBCCGGGTCCSBSEEEEEGGGEEEECTTCCGGGG-------------------------EEEEEGGGHHHHHHHHHH
T ss_pred             ceeeccccccccccceeEEEehHHEEECCCCCCcccE-------------------------EEEeCcHHHHHHHHHHHH
Confidence            5556667788899999999999999999999886653                         345677999999999999


Q ss_pred             HcCCCEEEEE
Q 020435          161 LCGATRIIGV  170 (326)
Q Consensus       161 ~~g~~~V~~~  170 (326)
                      .+|+.+|+++
T Consensus       184 ~~g~~~iiaV  193 (194)
T d1f8fa1         184 GITLKPIIKI  193 (194)
T ss_dssp             TSCSEEEEEC
T ss_pred             HcCCCEEEEe
Confidence            9999566654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=8.3e-24  Score=173.99  Aligned_cols=172  Identities=17%  Similarity=0.168  Sum_probs=132.4

Q ss_pred             CCccccccccchhhhhhhhhhhhcccCCC--CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHhcCCcE
Q 020435          112 VPPNRACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTE  187 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~~~~~~~~~--~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-~~~~g~~~  187 (326)
                      +|+.+.| ++++..|||+++.+.+++++|  ++|||+|+ |++|++++|+||.+|+.+|++++.++++... .+++|+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            5566654 667899999999999999987  88999986 9999999999999999667777777766654 56799999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCC--------CCcccccHHHHHh
Q 020435          188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP--------GSQLSLSSFEVLH  259 (326)
Q Consensus       188 vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~--------~~~~~~~~~~~~~  259 (326)
                      ++|+.+   +++.+.+++.++.|+|+|||++|++. ++.++++++++ |+++.+|...+        ..........+..
T Consensus        81 vi~~~~---~~~~~~~~~~~~~GvDvv~D~vGg~~-~~~~~~~l~~~-G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~  155 (187)
T d1vj1a2          81 AVNYKT---GNVAEQLREACPGGVDVYFDNVGGDI-SNTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPPAVEAIRKE  155 (187)
T ss_dssp             EEETTS---SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEE-EEEEEC------------CCCCCHHHHHHHHH
T ss_pred             Eeeccc---hhHHHHHHHHhccCceEEEecCCchh-HHHHhhhcccc-ccEEEeccccccccccccCCchHHHHHHHHHh
Confidence            999998   89999999998779999999999887 99999999998 99999986332        1111111223456


Q ss_pred             cCCEEEeeeccCCCC--CCCHHHHHHHHhCCC
Q 020435          260 SGKILMGSLFGGLKA--KSDIPILLKRYMDKE  289 (326)
Q Consensus       260 ~~~~i~~~~~~~~~~--~~~~~~~~~l~~~g~  289 (326)
                      |++++.++.+..+..  .+.++++.+++++|+
T Consensus       156 k~i~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         156 RNITRERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             TTCEEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             cceEEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            889999886654431  233666777777774

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=5.6e-23  Score=169.76  Aligned_cols=167  Identities=25%  Similarity=0.226  Sum_probs=139.1

Q ss_pred             cccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCC
Q 020435          115 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  194 (326)
Q Consensus       115 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~  194 (326)
                      ++.++++.+++|||+++ +.+++++|++|||+|+|++|++++++|+..|+.+|++++.++++++.++++|+++++++.+ 
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-
Confidence            46778888999999985 6799999999999999999999999999999889999999999999999999999999988 


Q ss_pred             CCccHHHHHHHhcCC-CccEEEEcCCc---------------HHHHHHHHHHhhcCCcEEEEeccCCCCC----------
Q 020435          195 GDKSVSQIIIDMTDG-GADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGVDQPGS----------  248 (326)
Q Consensus       195 ~~~~~~~~i~~~~~~-g~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~~~~~----------  248 (326)
                        .++.+.+.+++++ ++|++|||+|.               +..++.++++++++ |+++++|...+..          
T Consensus        80 --~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~G~~~~~~~~~~~~~~~~  156 (195)
T d1kola2          80 --TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKI  156 (195)
T ss_dssp             --SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCCTTCSSHHHHT
T ss_pred             --cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEeeecCCCcccchhhhhhc
Confidence              8999999999998 99999999984               34699999999998 9999999754322          


Q ss_pred             -cccccHHHHHhcCCEEEeeeccCCCCCCCHHHHHHHHhCCC
Q 020435          249 -QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE  289 (326)
Q Consensus       249 -~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~  289 (326)
                       ..++.+..++.|++++.+.   ....+..++++++++.+++
T Consensus       157 ~~~~~~~~~~~~k~~~i~~g---~~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         157 GSLSIRFGLGWAKSHSFHTG---QTPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             TCCCCCHHHHHHTTCEEEES---SCCHHHHHHHHHHHHHTTS
T ss_pred             CceeeeHHHHHhhcceeccC---CCchHHHHHHHHHHHHcCC
Confidence             2234555566778877542   2222345778888887763

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.89  E-value=1.8e-23  Score=172.89  Aligned_cols=145  Identities=36%  Similarity=0.500  Sum_probs=118.9

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      |.++...+|+++|||++|+|+++|++|+.+++||||++.+...|+.|.+|+.++++.|.....+...+...+...++ ..
T Consensus        53 G~~~~~~~p~v~GhE~~G~V~~vG~~V~~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~-~~  131 (197)
T d2fzwa1          53 GADPEGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRF-TC  131 (197)
T ss_dssp             TCCTTCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSE-EE
T ss_pred             CCcccccccccCCcceeeEEEeecCCceecCCCCEEEEccccccccccccccCccccCccccccccccccCCcccee-cc
Confidence            45677889999999999999999999999999999999999999999999999999998765532233333331111 13


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEE
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  146 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~  146 (326)
                      .|..+.+++++|+||||+++++.+++++|+++|+++||++.+++.|++.++.....-+.+++|||+
T Consensus       132 ~g~~v~~~~g~GgfAey~vvp~~~~~~vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         132 KGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCcceecccccccceeEEEechHHEEECCCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            455667778889999999999999999999999999999999999999875444444678898874

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.7e-23  Score=172.09  Aligned_cols=126  Identities=19%  Similarity=0.274  Sum_probs=106.0

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCC-CCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCC----CCCCCCCCC
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENV-DGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKI----SPWMPRDQT   74 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v-~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~g~   74 (326)
                      |.+++.++|+|+|||++|+|+++|+++ +.+++||||.+.+. .+|+.|.+|+.+++++|.......    ..|+..+| 
T Consensus        55 g~~~~~~~P~i~GHE~~G~Vv~vG~~v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~G-  133 (192)
T d1piwa1          55 GHWGNMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQG-  133 (192)
T ss_dssp             TTTSCCCSSEECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCC-
T ss_pred             CCCCCCCCCcCcccccccchhhcccccccccCCCCeeeEeeeccCCCCchhhhcCCccccccccccccccccccccccc-
Confidence            456778899999999999999999988 66999999976654 579999999999999998876531    11333344 


Q ss_pred             ccccccCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEE
Q 020435           75 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  146 (326)
Q Consensus        75 ~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~  146 (326)
                                        +|+||+++++.+++++|++++++.|+.+.+.+.|||+++ +.++++.+++|||.
T Consensus       134 ------------------gfaey~~v~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         134 ------------------GYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             ------------------SSBSEEEEEGGGEEECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             ------------------ceeeEEEeehHHeEECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence                              999999999999999999999988877765678999965 67999999999975

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2e-23  Score=171.30  Aligned_cols=119  Identities=24%  Similarity=0.284  Sum_probs=103.7

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGE   83 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~   83 (326)
                      +.++|+|+|||++|+|+++|+++++|++||||++.+...|+.|.+|+.+++++|....+   .|.. .+|          
T Consensus        60 ~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~---~g~~~~~G----------  126 (185)
T d1pl8a1          60 IVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDDG----------  126 (185)
T ss_dssp             ECSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBCC----------
T ss_pred             CCCCCeeeeeeeeeeEEEeccceeeecccccceecceeccccchhhccchhchhcccee---eecccccc----------
Confidence            35689999999999999999999999999999999999999999999999999988776   4443 344          


Q ss_pred             ccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccC
Q 020435           84 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLG  149 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag  149 (326)
                               +|+||+.+++++++++|+++++++|+++  ++++|+++ ++.++++.|++||| |+|
T Consensus       127 ---------~~aey~~~~~~~~~~lP~~~~~~~aa~~--pl~~a~~a-~~~~~~~~G~~VlI-g~G  179 (185)
T d1pl8a1         127 ---------NLCRFYKHNAAFCYKLPDNVKPLVTHRF--PLEKALEA-FETFKKGLGLKIML-KCD  179 (185)
T ss_dssp             ---------SCBSEEEEEGGGEEECCTTCGGGEEEEE--EGGGHHHH-HHHHHTTCCSEEEE-ECC
T ss_pred             ---------cceEEEEEchHHEEECCCCCCHHHHHHH--HHHHHHHH-HHHhCCCCCCEEEE-EeC
Confidence                     9999999999999999999999988765  45677775 57788999999998 544

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=1.3e-25  Score=186.27  Aligned_cols=143  Identities=20%  Similarity=0.196  Sum_probs=112.0

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      +..+|+++|||++|+|+++|++|++|++||||++.+..+|+.|++|+.++++.|.........+.....           
T Consensus        57 ~~~~P~v~GHE~~G~Vv~vG~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~-----------  125 (201)
T d1kola1          57 TAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYV-----------  125 (201)
T ss_dssp             CCCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCT-----------
T ss_pred             ccccceeccceeeeeeeccccccccccccceeEEeeeeeccCChhhhCCCccccccccccccccccccc-----------
Confidence            357899999999999999999999999999999999999999999999999999776643222211000           


Q ss_pred             cccccccccccceEEecc--cceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHc
Q 020435           85 IHHFVSVSSFSEYTVLDI--AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLC  162 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~--~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~  162 (326)
                       ......|+|+||+++|.  .++++|||+.++.+++++..++.++++++ ..++.+.+    ++|+|++|++++|+||++
T Consensus       126 -~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g----~~g~G~vG~~~i~~ak~~  199 (201)
T d1kola1         126 -DMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYG----EFDAGVPKKFVIDPHKTF  199 (201)
T ss_dssp             -TSCCBCCCSBSEEEESSHHHHCEECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHH----HHHHTCSCEEEECTTCSS
T ss_pred             -CCCccccccccEEEeehHHCeEEECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCe----EEeeCHHHHHHHHHHHHc
Confidence             00011249999999975  47999999877777777777888888864 44554444    358899999999999998


Q ss_pred             CC
Q 020435          163 GA  164 (326)
Q Consensus       163 g~  164 (326)
                      |+
T Consensus       200 GA  201 (201)
T d1kola1         200 SA  201 (201)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.87  E-value=2.5e-22  Score=167.07  Aligned_cols=134  Identities=37%  Similarity=0.561  Sum_probs=112.0

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC-------CCCcccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-------DQTSRFK   78 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~g~~~~~   78 (326)
                      ..+|+++|||++|+|+++|++|+++++||||++.+...|+.|++|+.+++++|.....   .++..       .+..+ .
T Consensus        59 ~~~P~v~GHE~~G~V~~vG~~V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~---~~~~~~~~~~~~~~~~~-~  134 (202)
T d1e3ia1          59 ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRN---FKYPTIDQELMEDRTSR-F  134 (202)
T ss_dssp             CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCC---SSCGGGSSCSCTTSCCS-E
T ss_pred             cccccccccccceEEeeecCCceeccCCCEEEEEeeccccccccccCCcccccccccc---cccCccceecccccccc-c
Confidence            5689999999999999999999999999999999999999999999999999998876   33321       11112 2


Q ss_pred             ccCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEE
Q 020435           79 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  146 (326)
Q Consensus        79 ~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~  146 (326)
                      ...|..+.++.+.|+|+||+++++..++++|+++|++.++++.+++.++++++ .  .+++|++|.|+
T Consensus       135 ~~~g~~v~~~~~~G~faey~~v~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~-~--~~k~G~~V~vi  199 (202)
T d1e3ia1         135 TCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESINDAI-D--LMKEGKSIRTI  199 (202)
T ss_dssp             EETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCGGGGEEEEEEGGGHHHHH-H--HHHTTCCSEEE
T ss_pred             ccCceeeecccccCCceEEEEEehhhEEECCCCCCHHHHHHHHHHHHHHHHHH-H--hCCCCCEEEEE
Confidence            24566677778889999999999999999999999999888888888887764 2  35689988876

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=2.9e-22  Score=162.94  Aligned_cols=122  Identities=24%  Similarity=0.268  Sum_probs=106.2

Q ss_pred             CCCC-CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 020435            1 MKDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFK   78 (326)
Q Consensus         1 g~~~-~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~   78 (326)
                      |.+| ...+|+++|||++|+|+++|++++++++||||++.+. ..|+.|.+|+.++++.|.....   .|+..+|     
T Consensus        52 G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~~~g-----  123 (175)
T d1llua1          52 GDWPVKPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYSVNG-----  123 (175)
T ss_dssp             TCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-----
T ss_pred             cCccccccCCcCCCCcceEEEEEeCCCccccccCCEEEeccccccCCccccccCCcccccccccc---ccccccc-----
Confidence            4555 4579999999999999999999999999999987655 5699999999999999988886   7877777     


Q ss_pred             ccCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEE
Q 020435           79 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  146 (326)
Q Consensus        79 ~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~  146 (326)
                                    +|+||+.+++++++++|+++|++.++++...+.|+++.+ +... .+|++|||+
T Consensus       124 --------------g~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t~~~~~-~~g~-~~G~~VLVl  175 (175)
T d1llua1         124 --------------GYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM-RAGQ-IEGRIVLEM  175 (175)
T ss_dssp             --------------SSBSEEEECTTTSEECCTTCCCCEEEECGGGHHHHHHHH-HTTC-CSSEEEEEC
T ss_pred             --------------ccceEEEechHHEEECCCCCChhHHHHHHhHHHHHHHHH-HhCC-CCCCEEEeC
Confidence                          999999999999999999999999988888888888854 4443 469999984

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.5e-22  Score=162.87  Aligned_cols=149  Identities=15%  Similarity=0.144  Sum_probs=124.4

Q ss_pred             CCccccccccchhhhhhhhhh---hhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcE
Q 020435          112 VPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  187 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~---~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~  187 (326)
                      +|+.+|++++++..|||++++   +......+++|||+|+ |++|.+++|+||.+|+ +|+++++++++.+.++++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            578999999999999998754   3344455679999986 9999999999999999 9999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEee
Q 020435          188 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  267 (326)
Q Consensus       188 vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~  267 (326)
                      ++|+++   .++.+   .+.....|.++|+++++. +..++++++++ |+++.+|... ....+++...++.|++++.|+
T Consensus        80 vi~~~~---~~~~~---~l~~~~~~~vvD~Vgg~~-~~~~l~~l~~~-Griv~~G~~~-~~~~~~~~~~~~~k~~~i~G~  150 (177)
T d1o89a2          80 VLPRDE---FAESR---PLEKQVWAGAIDTVGDKV-LAKVLAQMNYG-GCVAACGLAG-GFTLPTTVMPFILRNVRLQGV  150 (177)
T ss_dssp             EEEGGG---SSSCC---SSCCCCEEEEEESSCHHH-HHHHHHTEEEE-EEEEECCCTT-CSCCCCCSHHHHHHCCEEEEC
T ss_pred             cccccc---HHHHH---HHHhhcCCeeEEEcchHH-HHHHHHHhccc-cceEeecccC-CccccccHHHHHHCCCeEEEE
Confidence            999876   44332   222337899999999988 99999999998 9999999753 456677778888899999997


Q ss_pred             ecc
Q 020435          268 LFG  270 (326)
Q Consensus       268 ~~~  270 (326)
                      +..
T Consensus       151 ~~~  153 (177)
T d1o89a2         151 DSV  153 (177)
T ss_dssp             CSS
T ss_pred             ecc
Confidence            543

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.85  E-value=3e-23  Score=168.41  Aligned_cols=123  Identities=18%  Similarity=0.142  Sum_probs=97.5

Q ss_pred             CCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCC
Q 020435            3 DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG   82 (326)
Q Consensus         3 ~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~   82 (326)
                      .+...+|+|+|||++|+|+++|++|++|++||||++.+..+|+.|.+|+.++++.|.........+...+|         
T Consensus        48 ~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G---------  118 (177)
T d1jqba1          48 ALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDG---------  118 (177)
T ss_dssp             TTCCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCC---------
T ss_pred             CCCCCCCccCcceeeEEeeecccccceecCCCcEEEeeeeccccccchhhhhhcccccccccccccCCCCh---------
Confidence            34567899999999999999999999999999999999999999999999999999887654334444555         


Q ss_pred             cccccccccccccceEEecc--cceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHH
Q 020435           83 ETIHHFVSVSSFSEYTVLDI--AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV  155 (326)
Q Consensus        83 ~~~~~~~~~g~~a~~~~v~~--~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a  155 (326)
                                +|+||++++.  ..++++|+++++++++....   +++..+        ++.+||.|+|++|+++
T Consensus       119 ----------~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~---~~~~~~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         119 ----------VFGEYFHVNDADMNLAILPKDVDLSKLVTHVY---HGFDHI--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             ----------SSBSSEEESSHHHHCEECCTTSCGGGGEEEEE---ESGGGH--------HHHHHHHHHCCTTCSE
T ss_pred             ----------hcCeeEEEEhhhCeEEECCCCcchHHHHHHHH---HHHHHh--------cCceEEECCCHHHhhe
Confidence                      9999999985  46999999999887765332   233322        3346777777776543

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=1.1e-21  Score=159.76  Aligned_cols=125  Identities=25%  Similarity=0.345  Sum_probs=99.4

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCC-----CccCCCEEeecCCCCCCCCccccCCCC-CCCCCCCCCCCCCCCCCCC
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVD-----GVVEGDVVIPHFLADCTECVGCRSKKG-NLCSAFPFKISPWMPRDQT   74 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~-----~~~vGd~V~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~g~   74 (326)
                      |++|..++|+|+|||++|+|+++|++|+     ++++||+|++.+..+|+.|.+|+.+++ +.|.....   +|++.. .
T Consensus        51 G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~---~G~~~~-~  126 (184)
T d1vj0a1          51 GEDPRVPLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRG-C  126 (184)
T ss_dssp             TCCTTCCSSBCCCCEEEEEEEEESSCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCC-S
T ss_pred             ccCCccccccccceeeeeeeeEEeccccccccccccceeeeEeccccccccChhHhCccccccCCCcee---eccCCC-C
Confidence            5677778999999999999999999986     467999999999999999999999986 45777665   554321 1


Q ss_pred             ccccccCCcccccccccccccceEEec-ccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEE
Q 020435           75 SRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  146 (326)
Q Consensus        75 ~~~~~~~~~~~~~~~~~g~~a~~~~v~-~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~  146 (326)
                      ..+.+.          .|+|+||++++ +.+++++|+++++++      ++++|+++ .+.+++++|++|||+
T Consensus       127 ~~~~~~----------~Gg~ae~~~v~~~~~v~~ip~~l~~~~------pl~~A~~a-~~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         127 SEYPHL----------RGCYSSHIVLDPETDVLKVSEKITHRL------PLKEANKA-LELMESREALKVILY  182 (184)
T ss_dssp             SSTTCC----------CSSSBSEEEECTTCCEEEECTTCCEEE------EGGGHHHH-HHHHHHTSCSCEEEE
T ss_pred             CCCCCc----------ceeCcCcEEechhHcEEECCCCCCHHH------HHHHHHHH-HHHhCCCcCCEEEEe
Confidence            111111          23999999995 679999999999764      45678876 477899999999997

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.84  E-value=2.8e-22  Score=165.80  Aligned_cols=138  Identities=36%  Similarity=0.593  Sum_probs=108.2

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|+++|||++|+|+++|++++++++||||++.+..+|+.|.+|+.+++++|.........+....+..++. ..+..+
T Consensus        59 ~~~P~i~GHE~~G~Vv~~G~~v~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~~~~~  137 (198)
T d1p0fa1          59 SKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPI  137 (198)
T ss_dssp             CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEE
T ss_pred             cccccccceeeeeeeeecCcccccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEe-eCCeec
Confidence            5799999999999999999999999999999999999999999999999999998886444444444322222 345555


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA  154 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~  154 (326)
                      +.+.++|+|+||+.+++..++++|++++.+.++...+.+          ..+.++++|||.|+|++|++
T Consensus       138 ~~~~~~g~faey~~v~~~~~~kip~~~~~~~~~~~~~~~----------~~v~~~~~vlv~G~G~iGl~  196 (198)
T d1p0fa1         138 YNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL----------DQINKAFELLSSGQGVRSIM  196 (198)
T ss_dssp             BCSTTTCCSBSEEEEETTSEEEECTTSCGGGGEEEEECG----------GGHHHHHHHTTTSSCSEEEE
T ss_pred             cccCCCccceeeEEecHHHEEECCCCCCHHHHHHhhcch----------hhcCCCCEEEEECCCcceEE
Confidence            666677899999999999999999999977665443322          22334556888888887753

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=4e-21  Score=156.39  Aligned_cols=118  Identities=23%  Similarity=0.384  Sum_probs=98.2

Q ss_pred             CCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCc
Q 020435            4 FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE   83 (326)
Q Consensus         4 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~   83 (326)
                      +..++|+|+|||++|+|+++|+++++|++||||++.+...|+.|.+|+.++++.|.....   +|+..+|          
T Consensus        58 ~~~~~P~v~GhE~~G~V~~~g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~~~G----------  124 (177)
T d1jvba1          58 LGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG----------  124 (177)
T ss_dssp             TCCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC----------
T ss_pred             cccCCCccccceEEEEEeeeccCccccccCceEeeeeccccccccccccccccccCCcce---eeecccc----------
Confidence            445799999999999999999999999999999999999999999999999999998876   7777777          


Q ss_pred             ccccccccccccceEEecccc-eEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEE
Q 020435           84 TIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI  145 (326)
Q Consensus        84 ~~~~~~~~g~~a~~~~v~~~~-~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI  145 (326)
                               +|+||+.+++.. ++++|+..+.+.|+....++.+|++++ +.+++ .|++|||
T Consensus       125 ---------~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         125 ---------AYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             ---------SSBSEEEESCGGGEEECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             ---------ccccEEEEEhHHeEEECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence                     999999997655 556666555444444456888999864 55665 5899987

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=1.9e-21  Score=156.16  Aligned_cols=137  Identities=15%  Similarity=0.172  Sum_probs=114.0

Q ss_pred             hhhhhh---hhhhhhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCcc
Q 020435          123 GVSTGV---GAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  198 (326)
Q Consensus       123 ~~~ta~---~~l~~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~  198 (326)
                      +..|||   +++.+....+++++|||+|+ |++|.+++|+||++|+ +|+++++++++.++++++|+++++++++     
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~-----   77 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED-----   77 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH-----
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc-----
Confidence            345665   44556666778889999986 9999999999999999 9999999999999999999999998653     


Q ss_pred             HHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEeee
Q 020435          199 VSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  268 (326)
Q Consensus       199 ~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~~  268 (326)
                      +.....+.+.+ ++|+|||++|+.. +..++++|+++ |+++.+|... ....+++...++.|+++++|..
T Consensus        78 ~~~~~~~~~~~~gvd~vid~vgg~~-~~~~~~~l~~~-G~iv~~G~~~-g~~~~~~~~~l~~k~~~i~G~~  145 (167)
T d1tt7a2          78 VYDGTLKALSKQQWQGAVDPVGGKQ-LASLLSKIQYG-GSVAVSGLTG-GGEVPATVYPFILRGVSLLGID  145 (167)
T ss_dssp             HCSSCCCSSCCCCEEEEEESCCTHH-HHHHHTTEEEE-EEEEECCCSS-CSCEEECSHHHHTSCCEEEECC
T ss_pred             hhchhhhcccCCCceEEEecCcHHH-HHHHHHHhccC-ceEEEeeccC-CCcccCCHHHHHHCCcEEEEEe
Confidence            11122233444 9999999999998 99999999998 9999999854 5677888888899999999974

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.83  E-value=5.9e-21  Score=154.49  Aligned_cols=120  Identities=25%  Similarity=0.350  Sum_probs=101.6

Q ss_pred             CCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            3 DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         3 ~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      .+...+|.++|||++|+|+++|++++++++||||++.+. ..|+.|..|+.+++++|.....   .|+..+|        
T Consensus        50 ~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~G--------  118 (171)
T d1rjwa1          50 PVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG--------  118 (171)
T ss_dssp             SSCCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC--------
T ss_pred             ccccccccccCCEEEEEEEEecccccCceeeeEEeeccccccccccccccCCCccccccccc---cceeccC--------
Confidence            456689999999999999999999999999999987665 5588999999999999988876   7777777        


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  148 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga  148 (326)
                                 +|+||+++++++++++|++++++.|+ +. .+.++++.+. .+.+ +|++|||+|.
T Consensus       119 -----------~~aey~~v~~~~~~~iP~~~~~e~A~-l~-~~~~~~~~~~-~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         119 -----------GYAEYCRAAADYVVKIPDNTIIEVQP-LE-KINEVFDRML-KGQI-NGRVVLTLED  170 (171)
T ss_dssp             -----------SSBSEEEEEGGGCEECCTTCCEEEEE-GG-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred             -----------ccccceEecHHHEEECCCCCCHHHHH-HH-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence                       99999999999999999999987665 44 4567777653 3555 5999999874

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.82  E-value=2.3e-20  Score=154.50  Aligned_cols=140  Identities=31%  Similarity=0.491  Sum_probs=108.8

Q ss_pred             CCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 020435            2 KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR   81 (326)
Q Consensus         2 ~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~   81 (326)
                      .+| .++|+++|||++|+|+++|++++++++||||++.+...|+.|.+|+.+++++|.........+...++ .......
T Consensus        56 ~~~-~~~P~i~GHE~~G~Vv~vG~~v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~-~~~~~~~  133 (198)
T d2jhfa1          56 TLV-TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDG-TSRFTCR  133 (198)
T ss_dssp             SSC-CCSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTS-CCSEEET
T ss_pred             Ccc-cccceecccceeEEEEecCccccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCc-ccccccc
Confidence            344 56899999999999999999999999999999999999999999999999999988754222222222 1122245


Q ss_pred             CcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEE
Q 020435           82 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  146 (326)
Q Consensus        82 ~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~  146 (326)
                      |...++++++|+|+||+++++.+++++|+.++++.++....++.+...   ....+++|++|+|+
T Consensus       134 g~~~~~~~~~G~fAEy~~v~~~~~~~~p~~~~~e~l~~~~~~~~~v~~---g~~~l~~G~~VaVi  195 (198)
T d2jhfa1         134 GKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEKINE---GFDLLRSGESIRTI  195 (198)
T ss_dssp             TEEEBCSTTTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHH---HHHHHHTTCCSEEE
T ss_pred             CceeccCCCCCcccCeEEeCHHHeEECCCCCCHHHHHHHHHHHHhhhh---CCceeeCCCEEEEE
Confidence            667788888899999999999999999999998776655444443222   22346789988876

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=4.3e-19  Score=143.92  Aligned_cols=120  Identities=19%  Similarity=0.283  Sum_probs=87.6

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD   79 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~   79 (326)
                      |.++...+|+|+|||++|+|+++|++|+++++||||.+.+. ..|+.|++|+.+++++|....... .+.....      
T Consensus        47 g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~~~~~~~------  119 (179)
T d1uufa1          47 SEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTY-NSPTPDE------  119 (179)
T ss_dssp             CTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETT-TSBCSST------
T ss_pred             eeeccccccccccccccccchhhccccccCCCCCEEEEcccccccCccccccCcccccCCCccccc-cccCCCC------
Confidence            45667789999999999999999999999999999977664 579999999999999998765310 0100000      


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccC
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE  138 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~  138 (326)
                             .....|+|+||+.+++++++++|+.....  +.. .++.++++++. .+.++
T Consensus       120 -------~~~~~GgfaEy~~v~~~~~~~ip~~~~~~--~~a-~~l~~a~~a~~-~a~v~  167 (179)
T d1uufa1         120 -------PGHTLGGYSQQIVVHERYVLRIRVADIEM--IRA-DQINEAYERML-RGDVK  167 (179)
T ss_dssp             -------TSBCCCSSBSEEEEEGGGCEECCCCCEEE--ECG-GGHHHHHHHHH-TTCSS
T ss_pred             -------CcccccccceEEEechHHEEECCCCCcCh--hHh-chhHHHHHHHH-HhCcc
Confidence                   00112499999999999999999664332  222 36678888754 34443

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.3e-18  Score=137.18  Aligned_cols=94  Identities=18%  Similarity=0.300  Sum_probs=84.6

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      ...+|.++|||++|+|+++|+++++|++||||++.+.                             ..            
T Consensus        57 ~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~~------------   95 (150)
T d1yb5a1          57 KPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSST-----------------------------IS------------   95 (150)
T ss_dssp             CCCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCC-----------------------------SS------------
T ss_pred             cccccccCccceeeeeEeecceeeccccCcccccccc-----------------------------cc------------
Confidence            4578999999999999999999999999999965321                             22            


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEE
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  146 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~  146 (326)
                             |+|+||+.+++++++++|+++|+++||++++...|||++++..++...|+++||.
T Consensus        96 -------G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          96 -------GGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             -------CSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             -------ccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence                   3999999999999999999999999999999999999998888999999999973

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=7.6e-18  Score=132.37  Aligned_cols=96  Identities=20%  Similarity=0.220  Sum_probs=79.1

Q ss_pred             CCCCCCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            1 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         1 g~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      |.++...+|.++|||++|+|+++|++|++|++||||+..                             ....        
T Consensus        49 G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~-----------------------------~~~~--------   91 (147)
T d1qora1          49 GLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYA-----------------------------QSAL--------   91 (147)
T ss_dssp             TSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEES-----------------------------CCSS--------
T ss_pred             CCCCCCcceeeeccccccceeeeeeecccccccceeeee-----------------------------cccc--------
Confidence            567778899999999999999999999999999999531                             1112        


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCcccccc--ccchhhhhhhhhhhhcccCCCCEEEE
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--LSCGVSTGVGAAWRTANVEVGSTVVI  145 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~--l~~~~~ta~~~l~~~~~~~~~~~vlI  145 (326)
                                 |+|+||+.++.+.++++|++++++++++  +++...++++++++ .++++|++|||
T Consensus        92 -----------G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1          92 -----------GAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             -----------CCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             -----------ccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence                       3999999999999999999999886654  45566677776654 67899999998

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.60  E-value=7.3e-16  Score=121.51  Aligned_cols=96  Identities=23%  Similarity=0.189  Sum_probs=79.1

Q ss_pred             CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcc
Q 020435            5 PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET   84 (326)
Q Consensus         5 ~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~   84 (326)
                      ...+|+++|||++|+|++  .+++.+++||+|.....                        ..+...+|           
T Consensus        57 ~~~~p~v~g~e~~G~v~~--~~~~~~~~g~~v~~~~~------------------------~~~~~~~G-----------   99 (152)
T d1xa0a1          57 VKTYPFVPGIDLAGVVVS--SQHPRFREGDEVIATGY------------------------EIGVTHFG-----------   99 (152)
T ss_dssp             CCSSSBCCCSEEEEEEEE--CCSSSCCTTCEEEEEST------------------------TBTTTBCC-----------
T ss_pred             cccccceeeeeeeeeeec--cCCCccccCCEEEEecC------------------------ccccccCC-----------
Confidence            457899999999999999  45678999999965321                        02233344           


Q ss_pred             cccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEc
Q 020435           85 IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  147 (326)
Q Consensus        85 ~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~G  147 (326)
                              +|+||+.++++.++++|+++| ++||++++...|||.++....+++ |++|||+|
T Consensus       100 --------~~aEy~~v~~~~~~~iP~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         100 --------GYSEYARLHGEWLVPLPKGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             --------SSBSEEEECGGGCEECCTTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             --------CcceeeeehhhccccCCCCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence                    999999999999999999998 578888888899988888888886 99999975

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=5.5e-16  Score=118.73  Aligned_cols=83  Identities=18%  Similarity=0.155  Sum_probs=70.6

Q ss_pred             CCCC-CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 020435            1 MKDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD   79 (326)
Q Consensus         1 g~~~-~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~   79 (326)
                      |.++ ...+|+++|||++|+|           +||+|...                              ..+|      
T Consensus        47 G~~~~~~~~P~v~G~E~~G~V-----------vGd~V~~~------------------------------~~~G------   79 (131)
T d1iz0a1          47 GAYLTRLHPPFIPGMEVVGVV-----------EGRRYAAL------------------------------VPQG------   79 (131)
T ss_dssp             TCSSSCCCSSBCCCCEEEEEE-----------TTEEEEEE------------------------------CSSC------
T ss_pred             ccccccccceeEeeeeeEEee-----------ccceEEEE------------------------------eccC------
Confidence            3444 4579999999999999           49999542                              2334      


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEE
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI  145 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI  145 (326)
                                   +|+||+.++++.++++|+++|+++||++.+.+.|||++++++++  .|++||+
T Consensus        80 -------------~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g~--~g~tvl~  130 (131)
T d1iz0a1          80 -------------GLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRGH--TGKVVVR  130 (131)
T ss_dssp             -------------CSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTTC--CBEEEEE
T ss_pred             -------------ccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhccc--CCCEEEE
Confidence                         99999999999999999999999999999999999999877664  5899886

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.49  E-value=1.1e-15  Score=121.86  Aligned_cols=101  Identities=21%  Similarity=0.179  Sum_probs=81.5

Q ss_pred             CCC-CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020435            2 KDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL   80 (326)
Q Consensus         2 ~~~-~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~   80 (326)
                      .+| ...+|.++|+|++|+|++  +.++++++||+|.....                        ..|....|       
T Consensus        53 ~~~~~~~~~~~~g~e~~G~v~~--~~~~~~~~g~~v~~~~~------------------------~~g~~~~G-------   99 (162)
T d1tt7a1          53 GGNIVREYPLILGIDAAGTVVS--SNDPRFAEGDEVIATSY------------------------ELGVSRDG-------   99 (162)
T ss_dssp             TCTTCSSCSEECCSEEEEEEEE--CSSTTCCTTCEEEEEST------------------------TBTTTBCC-------
T ss_pred             cccccccceeeeeeeccccccc--ccccccccceeeEeeec------------------------cceecccc-------
Confidence            444 446889999999999998  45678999999976432                        13444555       


Q ss_pred             CCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhhhcccCCCCEEEEEcc
Q 020435           81 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  148 (326)
Q Consensus        81 ~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlI~Ga  148 (326)
                                  +|+||+.+++++++++|+++|+++||++++..+|||.++. ..+...+++|||+|+
T Consensus       100 ------------~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~ga  154 (162)
T d1tt7a1         100 ------------GLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRI  154 (162)
T ss_dssp             ------------SSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTCC
T ss_pred             ------------ccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECC
Confidence                        9999999999999999999999999999999999998643 345666678888876

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=9.3e-14  Score=108.23  Aligned_cols=84  Identities=14%  Similarity=0.019  Sum_probs=68.8

Q ss_pred             CCCC-CCCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 020435            1 MKDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD   79 (326)
Q Consensus         1 g~~~-~~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~   79 (326)
                      |+++ ...+|+++|+|++|+|+++|.+  .+++||+|++...                        ..|....|      
T Consensus        49 G~~~~~~~~p~v~G~e~~G~V~~~~~~--~~~~g~~v~~~~~------------------------~~g~~~~G------   96 (146)
T d1o89a1          49 GKGKIIRNFPMIPGIDFAGTVRTSEDP--RFHAGQEVLLTGW------------------------GVGENHWG------   96 (146)
T ss_dssp             TCSSCCCSSSBCCCSEEEEEEEEECST--TCCTTCEEEEECT------------------------TBTTTBCC------
T ss_pred             eecccccccceeccccccccceeeccC--CccceeeEEeecc------------------------cceecCCC------
Confidence            4555 4478999999999999998774  7999999976421                        13444445      


Q ss_pred             cCCcccccccccccccceEEecccceEEcCCCCCccccccccchhhhhhh
Q 020435           80 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG  129 (326)
Q Consensus        80 ~~~~~~~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~  129 (326)
                                   +|+||+.+++++++++|+++|+++||++++...||+.
T Consensus        97 -------------~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~  133 (146)
T d1o89a1          97 -------------GLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAI  133 (146)
T ss_dssp             -------------SSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHH
T ss_pred             -------------cceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                         9999999999999999999999999999988888754

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=2.1e-14  Score=98.17  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=65.8

Q ss_pred             CCccccccccchhhhhhhhhh---hhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC
Q 020435          112 VPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  185 (326)
Q Consensus       112 ~s~~~aa~l~~~~~ta~~~l~---~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~  185 (326)
                      +|+++|+.++.+..|||.+++   +....+++++|||+|+ |++|.+++|++|.+|+ +|+++++++++.++++++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            578999999999999998765   4456789999999986 9999999999999999 99999999999999999884

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.38  E-value=2.3e-15  Score=121.52  Aligned_cols=102  Identities=16%  Similarity=0.089  Sum_probs=83.1

Q ss_pred             CCCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCccc
Q 020435            6 AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI   85 (326)
Q Consensus         6 ~~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~   85 (326)
                      ..+|.++|+|++|+|++.|.++.++++||+|.....                             ..             
T Consensus        70 ~~~~~v~G~e~~g~V~~~~~~~~~~~~g~~v~~~~~-----------------------------~~-------------  107 (175)
T d1gu7a1          70 TEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------NF-------------  107 (175)
T ss_dssp             SSCBEECCSCCEEEEEEECTTCCSCCTTCEEEESSS-----------------------------CC-------------
T ss_pred             CCCCcccccccccccccccccccccccccceecccc-----------------------------cc-------------
Confidence            368899999999999999999999999999964321                             22             


Q ss_pred             ccccccccccceEEecccceEEcCCCCCccccccccchhhhhhhhhhh-hcccCCCCEEEEEc-c-CHHHHHHHH
Q 020435           86 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFG-L-GSIGLAVAE  157 (326)
Q Consensus        86 ~~~~~~g~~a~~~~v~~~~~~~ip~~~s~~~aa~l~~~~~ta~~~l~~-~~~~~~~~~vlI~G-a-g~~G~~a~~  157 (326)
                            |+|+||+.+++++++++|++++.+.++  .+..+|||+++.. ..++++|++|||+| + |++|++++|
T Consensus       108 ------g~~aey~~v~~~~~~~iP~~~~~~~a~--~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         108 ------GTWRTHALGNDDDFIKLPNPAQSKANG--KPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             ------CCSBSEEEEEGGGEEEECCHHHHHHTT--CSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             ------ccccceeeehhhhccCCCccchhhhhc--cchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence                  389999999999999999987644443  3466788887654 46799999999997 4 679988766

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.62  E-value=6.1e-08  Score=74.42  Aligned_cols=83  Identities=12%  Similarity=0.100  Sum_probs=60.6

Q ss_pred             CCCcccCCceeEEEEEecCCCCCccCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcccc
Q 020435            7 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH   86 (326)
Q Consensus         7 ~~p~i~G~e~~G~V~~~G~~v~~~~vGd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~   86 (326)
                      ...-++..+.+|+|++  +++++|++||+|...                                               
T Consensus        58 ~~g~~~~g~~vg~Vv~--S~~~~f~~GD~V~g~-----------------------------------------------   88 (147)
T d1v3va1          58 KEGAVMMGQQVARVVE--SKNSAFPAGSIVLAQ-----------------------------------------------   88 (147)
T ss_dssp             CTTSBCCCCEEEEEEE--ESCTTSCTTCEEEEC-----------------------------------------------
T ss_pred             ccCCccccceEEEEEE--eCCCcccCCCEEEEc-----------------------------------------------
Confidence            3444566688999998  667899999999642                                               


Q ss_pred             cccccccccceEEecccceEEcCCCCCcc-----ccccccchhhhh-hhhhhhhcccCCCCEEEE
Q 020435           87 HFVSVSSFSEYTVLDIAHVVKVDPTVPPN-----RACLLSCGVSTG-VGAAWRTANVEVGSTVVI  145 (326)
Q Consensus        87 ~~~~~g~~a~~~~v~~~~~~~ip~~~s~~-----~aa~l~~~~~ta-~~~l~~~~~~~~~~~vlI  145 (326)
                           ++|+||.+++++.+.++|+.++..     ..+++....+|| |..+...  .+.|++||+
T Consensus        89 -----~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~~~--~k~Getvv~  146 (147)
T d1v3va1          89 -----SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEMLNG--ANLGKAVVT  146 (147)
T ss_dssp             -----CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHHTT--CCSSEEEEE
T ss_pred             -----cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhhCC--CCCCCEEEe
Confidence                 279999999999999998765432     345566667774 5445444  467999986

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.13  E-value=4.4e-06  Score=64.50  Aligned_cols=99  Identities=23%  Similarity=0.250  Sum_probs=75.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC--cEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      ++.+|+|+|+|..|+.+++.|+.+|+ .|.+.+.+.+++++++....  ......++   +.+.+.++     .+|+||.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~---~~l~~~~~-----~aDivI~  101 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA-----EADLLIG  101 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH-----TCSEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhhh---hhHHHhhc-----cCcEEEE
Confidence            46799999999999999999999999 99999999999998876432  12222222   34444444     4899998


Q ss_pred             cCCcHH------HHHHHHHHhhcCCcEEEEeccCCCC
Q 020435          217 CVGLAS------LVQEAYACCRKGWGKTIVLGVDQPG  247 (326)
Q Consensus       217 ~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~~  247 (326)
                      ++--+.      .-+..++.++++ ..+|+++...++
T Consensus       102 aalipG~~aP~lIt~~mv~~Mk~G-SVIVDvaidqGG  137 (168)
T d1pjca1         102 AVLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQGG  137 (168)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTCC
T ss_pred             eeecCCcccCeeecHHHHhhcCCC-cEEEEeecCCCC
Confidence            776421      246889999998 999999875543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.97  E-value=7.6e-06  Score=64.04  Aligned_cols=106  Identities=21%  Similarity=0.285  Sum_probs=75.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcC----CCCC-C------------ccHHH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS----KNCG-D------------KSVSQ  201 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~----~~~~-~------------~~~~~  201 (326)
                      ++.+|+|+|+|..|+.+++.|+.+|+ .|.+.+.+.++++++++++...+-..    .... .            ....+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            46799999999999999999999999 99999999999999999886433100    0000 0            01112


Q ss_pred             HHHHhcCCCccEEEEcCCcHH------HHHHHHHHhhcCCcEEEEeccCCCC
Q 020435          202 IIIDMTDGGADYCFECVGLAS------LVQEAYACCRKGWGKTIVLGVDQPG  247 (326)
Q Consensus       202 ~i~~~~~~g~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~~  247 (326)
                      .+.+... ..|+||-++--+-      .-+..++.++++ ..+|.++...++
T Consensus       107 ~l~~~l~-~aDlVI~talipG~~aP~lit~~mv~~Mk~G-SVIVDvaidqGG  156 (183)
T d1l7da1         107 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGG  156 (183)
T ss_dssp             HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTC
T ss_pred             HHHHHHH-hhhhheeeeecCCcccceeehHHHHHhcCCC-cEEEEEeecCCC
Confidence            2222222 6999997654321      356889999998 999999875543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.78  E-value=0.00019  Score=59.45  Aligned_cols=104  Identities=23%  Similarity=0.248  Sum_probs=72.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhcC--CCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~g~d~v  214 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+++.+...+ .|..+  .++..+.+.+...  +++|++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G~iDiL   80 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLED--ERERVRFVEEAAYALGRVDVL   80 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTC--HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCC--HHHHHHHHHHHHHhcCCCCeE
Confidence            6899999987 8999999999999999 99999999998888887776432 22222  1223333333322  389999


Q ss_pred             EEcCCcH-------------------------HHHHHHHHHhhcC-CcEEEEeccCC
Q 020435          215 FECVGLA-------------------------SLVQEAYACCRKG-WGKTIVLGVDQ  245 (326)
Q Consensus       215 ~d~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~g~~~  245 (326)
                      ++++|..                         ...+.++..|++. +|++|.++...
T Consensus        81 VnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~  137 (248)
T d2d1ya1          81 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQ  137 (248)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred             EEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccc
Confidence            9988751                         1344555666442 38999887543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.75  E-value=1.1e-05  Score=65.67  Aligned_cols=110  Identities=20%  Similarity=0.237  Sum_probs=76.7

Q ss_pred             ccchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEEEcCCCCC
Q 020435          120 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCG  195 (326)
Q Consensus       120 l~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~vi~~~~~~  195 (326)
                      ++.+...|.  +.+.++++++++||.+|+|. |..++.+++..|. +|++++.+++-.+.+    +++|.+.+.....  
T Consensus        61 is~P~~~a~--ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g--  134 (215)
T d1jg1a_          61 VSAPHMVAI--MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG--  134 (215)
T ss_dssp             ECCHHHHHH--HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES--
T ss_pred             hhhhhhHHH--HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEEC--
Confidence            444555553  67889999999999999876 8888888888886 899999988755554    4467554432222  


Q ss_pred             CccHHHHHHHhcC-CCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          196 DKSVSQIIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       196 ~~~~~~~i~~~~~-~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                        +..   ..+.. +.+|.|+-+.+....-..+++.|+++ |+++..
T Consensus       135 --d~~---~g~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~g-GrLv~p  175 (215)
T d1jg1a_         135 --DGS---KGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP  175 (215)
T ss_dssp             --CGG---GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             --ccc---cCCcccCcceeEEeecccccCCHHHHHhcCCC-CEEEEE
Confidence              110   01112 28999987666555456889999998 999874

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.71  E-value=0.0003  Score=58.40  Aligned_cols=106  Identities=14%  Similarity=0.157  Sum_probs=70.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcEEEcCCCCCCc-cHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDK-SVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~-~~~~~i~~~~~--~g~d~  213 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+ ++++.....-.-+..+. +..+.+.+...  +++|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            5789999987 8999999999999999 999999999887764 45665433322221222 22222333222  38999


Q ss_pred             EEEcCCcH-------------------------HHHHHHHHHhhcCCcEEEEeccCC
Q 020435          214 CFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       214 v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      +++++|..                         ...+.++..|+..+|++|.++...
T Consensus        84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~  140 (253)
T d1hxha_          84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVS  140 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred             EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchh
Confidence            99998851                         124455666654339999987643

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.63  E-value=5.4e-06  Score=67.52  Aligned_cols=102  Identities=22%  Similarity=0.309  Sum_probs=71.9

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~  205 (326)
                      +.+.+++++|++||-+|+|. |..++.+|+..|. .+|++++.+++..+.+++    .+.+.+.....    +..+   .
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~----d~~~---~  138 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG----DGYY---G  138 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES----CGGG---C
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC----chHH---c
Confidence            56888999999999999877 8888889988763 389999999988777654    34332221111    1000   0


Q ss_pred             hc-CCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          206 MT-DGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       206 ~~-~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      +. .+.||+|+....-....+.+++.|+++ |+++..
T Consensus       139 ~~~~~~fD~I~~~~~~~~~p~~l~~~LkpG-G~lv~p  174 (213)
T d1dl5a1         139 VPEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  174 (213)
T ss_dssp             CGGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEE
T ss_pred             cccccchhhhhhhccHHHhHHHHHHhcCCC-cEEEEE
Confidence            11 127999998776655456788999998 999873

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.59  E-value=5.6e-05  Score=62.70  Aligned_cols=103  Identities=13%  Similarity=0.094  Sum_probs=69.7

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cC-CcEEEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FG-VTEFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~i~  204 (326)
                      +...+++++|++||-.|+|. |.++..+|++.+. .+|++++.+++..+.+++    ++ ...+-...    .++    .
T Consensus        77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~----~Di----~  147 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR----SDI----A  147 (250)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC----SCT----T
T ss_pred             HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE----eee----e
Confidence            45668999999999999876 7777788887653 389999999998887754    22 22221111    111    1


Q ss_pred             HhcCC-CccEEE-EcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          205 DMTDG-GADYCF-ECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~~-g~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +...+ .+|.|| |.......++.+.+.|+++ |+++.+..
T Consensus       148 ~~~~~~~fD~V~ld~p~p~~~l~~~~~~LKpG-G~lv~~~P  187 (250)
T d1yb2a1         148 DFISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP  187 (250)
T ss_dssp             TCCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred             cccccceeeeeeecCCchHHHHHHHHHhcCCC-ceEEEEeC
Confidence            22233 899997 5555455688999999998 99988743

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.56  E-value=0.00033  Score=55.45  Aligned_cols=74  Identities=18%  Similarity=0.250  Sum_probs=54.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-----cCC-cEEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGV-TEFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-----~g~-~~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      +|++|||+|+ |++|..+++.+...|+ +|+.++++.++.+.+.+     ... ....|..+      .+.+.+.. +++
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~-~~i   93 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD------DASRAEAV-KGA   93 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS------HHHHHHHT-TTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc------HHHHHHHh-cCc
Confidence            6899999997 9999999999999999 99999999988766532     222 23344333      23344443 379


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++|++.|.
T Consensus        94 Dilin~Ag~  102 (191)
T d1luaa1          94 HFVFTAGAI  102 (191)
T ss_dssp             SEEEECCCT
T ss_pred             CeeeecCcc
Confidence            999999874

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.54  E-value=0.0002  Score=55.04  Aligned_cols=73  Identities=18%  Similarity=0.239  Sum_probs=56.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHH-HHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      -.+.+|||+|+|.+|.++++.+...|+.+++++.|+.++.+ ++++++. ++++.+     ++.+.+.     .+|+||.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-~~~~~~-----~~~~~l~-----~~Divi~   90 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-EAVRFD-----ELVDHLA-----RSDVVVS   90 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-EECCGG-----GHHHHHH-----TCSEEEE
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-ccccch-----hHHHHhc-----cCCEEEE
Confidence            46889999999999999999999999878999999987765 5667875 344433     3444443     4999999


Q ss_pred             cCCcH
Q 020435          217 CVGLA  221 (326)
Q Consensus       217 ~~g~~  221 (326)
                      |.+.+
T Consensus        91 atss~   95 (159)
T d1gpja2          91 ATAAP   95 (159)
T ss_dssp             CCSSS
T ss_pred             ecCCC
Confidence            99875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.53  E-value=0.00021  Score=55.44  Aligned_cols=74  Identities=15%  Similarity=0.154  Sum_probs=56.7

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEEEcCCCCCCccHHHHHHHhcCC
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      +++..++.++.+|||+|+|+.+.+++..++..|++++.++.|+.++.+.+. .++... ++...              ..
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~-~~~~~--------------~~   72 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY-INSLE--------------NQ   72 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE-ESCCT--------------TC
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh-hhccc--------------cc
Confidence            445666777889999999999999999999999878999999999877664 455533 22211              02


Q ss_pred             CccEEEEcCC
Q 020435          210 GADYCFECVG  219 (326)
Q Consensus       210 g~d~v~d~~g  219 (326)
                      .+|++++|..
T Consensus        73 ~~DliINaTp   82 (167)
T d1npya1          73 QADILVNVTS   82 (167)
T ss_dssp             CCSEEEECSS
T ss_pred             chhhheeccc
Confidence            6899999876

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00049  Score=56.64  Aligned_cols=101  Identities=21%  Similarity=0.372  Sum_probs=68.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCc---EEEcCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT---EFVNSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~---~vi~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+. +++..   ...|..+  .++..+.+.+...  +++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTD--PASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC--HHHhhhhhhhhhcccCCc
Confidence            4789999987 8999999999999999 9999999998877654 45432   1223222  1333333333322  389


Q ss_pred             cEEEEcCCcH-------------------------HHHHHHHHHh--hcCCcEEEEecc
Q 020435          212 DYCFECVGLA-------------------------SLVQEAYACC--RKGWGKTIVLGV  243 (326)
Q Consensus       212 d~v~d~~g~~-------------------------~~~~~~~~~l--~~~~G~~v~~g~  243 (326)
                      |++++++|..                         ...+.++..+  +.+ |++|.++.
T Consensus        80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~II~isS  137 (243)
T d1q7ba_          80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRH-GRIITIGS  137 (243)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECC
T ss_pred             ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCC-CEeeeecc
Confidence            9999988751                         1344555555  344 89999875

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.47  E-value=0.00011  Score=59.84  Aligned_cols=107  Identities=13%  Similarity=0.198  Sum_probs=72.9

Q ss_pred             cchhhhhhhhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc----CCcEEEcCCCCCC
Q 020435          121 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGD  196 (326)
Q Consensus       121 ~~~~~ta~~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~  196 (326)
                      +.+...|.  |.+.+.+++|++||-+|+|. |..++.+++.. . +|++++.+++..+.+++.    ....++..+.  .
T Consensus        54 ~~p~~~a~--ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l~-~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~--~  126 (224)
T d1vbfa_          54 TALNLGIF--MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG--T  126 (224)
T ss_dssp             CCHHHHHH--HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG--G
T ss_pred             ehhhhHHH--HHHHhhhcccceEEEecCCC-CHHHHHHHHHh-c-ccccccccHHHHHHHHHHHhcccccccccCch--h
Confidence            33444443  57888999999999999875 77777788764 4 899999999888877652    1122332221  0


Q ss_pred             ccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          197 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       197 ~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ..+.      ..+.||.|+-+.+-+.....+++.|+++ |++|..
T Consensus       127 ~g~~------~~~pfD~Iiv~~a~~~ip~~l~~qLk~G-GrLV~p  164 (224)
T d1vbfa_         127 LGYE------EEKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILP  164 (224)
T ss_dssp             GCCG------GGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             hcch------hhhhHHHHHhhcchhhhhHHHHHhcCCC-CEEEEE
Confidence            1110      1127999987666555566788999998 999875

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.0013  Score=54.01  Aligned_cols=105  Identities=15%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccHHHHHHHhc--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~~~~i~~~~--~  208 (326)
                      .|+++||+|+ +++|...+..+...|+ +|+.+++++++.+.+    +..|.. +.+  |..+  .++..+.+++..  -
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN--REDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHc
Confidence            5899999987 8999999999999999 999999999887654    334533 222  3332  122333333332  2


Q ss_pred             CCccEEEEcCCcH-------------------------HHHHHHHHHhhcC-CcEEEEeccCCC
Q 020435          209 GGADYCFECVGLA-------------------------SLVQEAYACCRKG-WGKTIVLGVDQP  246 (326)
Q Consensus       209 ~g~d~v~d~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~g~~~~  246 (326)
                      +++|++++++|..                         ...+.++..+.++ +|++|.++...+
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~  146 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG  146 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchh
Confidence            3899999998862                         1233444445442 378998887543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.46  E-value=0.00098  Score=55.16  Aligned_cols=79  Identities=23%  Similarity=0.368  Sum_probs=55.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcE-EE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++... .+  |..+  .++..+.+.+...  +++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   80 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCC--HHHHHHHHHHHHHHcCCc
Confidence            5889999987 8999999999999999 999999999887764 5565332 22  2222  1233333333322  389


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        81 DilVnnAg~   89 (254)
T d1hdca_          81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEecCcc
Confidence            999998885

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.45  E-value=0.00027  Score=58.26  Aligned_cols=79  Identities=22%  Similarity=0.264  Sum_probs=56.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEE-EcCCCCCCccHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~g~d~  213 (326)
                      +++++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. ++++..+ .|..+  .++..+.+.+...  +++|+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iDi   80 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHLGRLDG   80 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCC--HHHHHHHHHHHHHhcCCceE
Confidence            4789999987 8999999999999999 9999999998887654 4565433 23222  2233333333322  38999


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      +++++|.
T Consensus        81 lVnnAG~   87 (242)
T d1ulsa_          81 VVHYAGI   87 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9998885

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.42  E-value=0.00059  Score=56.67  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=56.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEEEcCCCCCCcc-H---HHHHHHhcCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKS-V---SQIIIDMTDG  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~-~---~~~i~~~~~~  209 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+    ++.+.....-.-++.+.+ .   .+.+.+..++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            6899999987 8999999999999999 999999998776543    345543322111211122 2   2334444445


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      .+|++++++|.
T Consensus        84 ~idilinnag~   94 (258)
T d1ae1a_          84 KLNILVNNAGV   94 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CcEEEeccccc
Confidence            79999998886

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00037  Score=57.45  Aligned_cols=77  Identities=17%  Similarity=0.227  Sum_probs=55.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcCCcEE--EcCCCCCCccHHHHHHHhcCCCccEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF--VNSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g~~~v--i~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+. +++..+.  .|..+   .+-.+.+.+.. +++|++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~-g~iDil   80 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD---WEATERALGSV-GPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTC-CCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHh-CCceEE
Confidence            6899999987 8999999999999999 9999999999887654 4443222  23333   33333332222 289999


Q ss_pred             EEcCCc
Q 020435          215 FECVGL  220 (326)
Q Consensus       215 ~d~~g~  220 (326)
                      +++++.
T Consensus        81 VnnAg~   86 (244)
T d1pr9a_          81 VNNAAV   86 (244)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            998875

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.00038  Score=57.33  Aligned_cols=75  Identities=17%  Similarity=0.175  Sum_probs=54.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcEEE--cCCCCCCccHHHHHHHhcCC--Ccc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFV--NSKNCGDKSVSQIIIDMTDG--GAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~vi--~~~~~~~~~~~~~i~~~~~~--g~d  212 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+ ++++....+  |..+   .+   .+++....  ++|
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~---~~---~v~~~~~~~g~iD   76 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD---WD---ATEKALGGIGPVD   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HH---HHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HH---HHHHHHHHcCCCe
Confidence            5899999987 8999999999999999 999999998887765 344422222  3322   33   33333333  899


Q ss_pred             EEEEcCCc
Q 020435          213 YCFECVGL  220 (326)
Q Consensus       213 ~v~d~~g~  220 (326)
                      ++++++|.
T Consensus        77 ilVnnAg~   84 (242)
T d1cyda_          77 LLVNNAAL   84 (242)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99998875

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.37  E-value=0.0016  Score=53.91  Aligned_cols=79  Identities=19%  Similarity=0.142  Sum_probs=54.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCc-EE--EcCCCCCCccHHH---HHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSVSQ---IIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~---~i~~~~  207 (326)
                      +|+++||+|+ ++||.++++.+...|+ +|+.+++++++.+.+.    +.+.. ..  .|..+  .++..+   .+.+..
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL--RPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC--HHHHHHHHHHHHHHh
Confidence            5889999987 8999999999999999 9999999988876542    23322 12  23222  122222   333333


Q ss_pred             CCCccEEEEcCCc
Q 020435          208 DGGADYCFECVGL  220 (326)
Q Consensus       208 ~~g~d~v~d~~g~  220 (326)
                      ++.+|++++++|.
T Consensus        84 ~g~idilvnnAG~   96 (259)
T d1xq1a_          84 GGKLDILINNLGA   96 (259)
T ss_dssp             TTCCSEEEEECCC
T ss_pred             CCCcccccccccc
Confidence            4579999999886

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00041  Score=57.41  Aligned_cols=102  Identities=21%  Similarity=0.275  Sum_probs=68.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEE--cCCCCCCccHHHHHHHhcC--CCcc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFV--NSKNCGDKSVSQIIIDMTD--GGAD  212 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi--~~~~~~~~~~~~~i~~~~~--~g~d  212 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+.+ ++....+  |..+  .++..+.+.+...  +++|
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~~~~g~iD   81 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ--EDDVKTLVSETIRRFGRLD   81 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCC--HHHHHHHHHHHHHhcCCCC
Confidence            5899999987 8999999999999999 99999999998887654 4432222  2222  1233333333322  3899


Q ss_pred             EEEEcCCcH--------------------------HHHHHHHHHhhcCCcEEEEecc
Q 020435          213 YCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       213 ~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ++++++|..                          ...+.++..|+.++|++|.++.
T Consensus        82 ilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS  138 (250)
T d1ydea1          82 CVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISS  138 (250)
T ss_dssp             EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             EEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCccccc
Confidence            999988741                          1234455555443389988875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=8.2e-05  Score=61.20  Aligned_cols=100  Identities=15%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCC---CCccHHHHHHHhcCC-CccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC---GDKSVSQIIIDMTDG-GADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~---~~~~~~~~i~~~~~~-g~d~  213 (326)
                      .|++|||+|+ +++|.++++.+...|+ +|+.+++.+++...     ....+.....   ..+.+.+.+.+..+. ++|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEAS-----ASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTSS-----EEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----ccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            4789999987 8999999999999999 99999876543211     1111111110   001223334444444 7999


Q ss_pred             EEEcCCcH--------------------------HHHHHHHHHhhcCCcEEEEeccCC
Q 020435          214 CFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       214 v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      +++++|..                          ...+.+...++++ |+++.++...
T Consensus        75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-G~Iv~isS~~  131 (236)
T d1dhra_          75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAKA  131 (236)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGG
T ss_pred             EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-cceeEEccHH
Confidence            99988740                          1244556677887 9999997643

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0011  Score=55.30  Aligned_cols=81  Identities=16%  Similarity=0.161  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-----cCCcE-EEcCCCCCCccHHHHHH-Hhc--
Q 020435          138 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVTE-FVNSKNCGDKSVSQIII-DMT--  207 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-----~g~~~-vi~~~~~~~~~~~~~i~-~~~--  207 (326)
                      -+|.++||+|+ +++|.++++.+...|+ +|+.+++++++++.+.+     .+... .+..+. ......+.+. ...  
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~   89 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTM-EDMTFAEQFVAQAGKL   89 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCT-TCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhh-hhHHHHHHHHHHHHHH
Confidence            36899999997 8999999999999999 99999999998876532     23322 222221 1122222222 221  


Q ss_pred             CCCccEEEEcCCc
Q 020435          208 DGGADYCFECVGL  220 (326)
Q Consensus       208 ~~g~d~v~d~~g~  220 (326)
                      .+..|+++++.+.
T Consensus        90 ~g~~~~li~nag~  102 (269)
T d1xu9a_          90 MGGLDMLILNHIT  102 (269)
T ss_dssp             HTSCSEEEECCCC
T ss_pred             hCCcccccccccc
Confidence            2378888887664

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.32  E-value=0.00032  Score=58.61  Aligned_cols=103  Identities=17%  Similarity=0.267  Sum_probs=73.4

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCC-cEEEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~i~  204 (326)
                      +...+++++|++||-.|+|. |.++..+|+..+. .+|++++.+++..+.+++    +|. +.+....    .+.    .
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~----~d~----~  165 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV----RDI----S  165 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC----CCG----G
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEe----ccc----c
Confidence            67789999999999999877 7778888988752 289999999998877654    453 2222111    111    1


Q ss_pred             HhcCC-CccEEE-EcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          205 DMTDG-GADYCF-ECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~~-g~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..... .+|.|+ |...-...++.+.++|+++ |+++.+..
T Consensus       166 ~~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpG-G~lv~~~P  205 (266)
T d1o54a_         166 EGFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP  205 (266)
T ss_dssp             GCCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred             ccccccceeeeEecCCCHHHHHHHHHhhcCCC-CEEEEEeC
Confidence            22333 799887 4444455689999999998 99988753

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00022  Score=58.05  Aligned_cols=109  Identities=20%  Similarity=0.247  Sum_probs=72.9

Q ss_pred             ccchhhhhhhhhhhhc--ccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCC-------
Q 020435          120 LSCGVSTGVGAAWRTA--NVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGV-------  185 (326)
Q Consensus       120 l~~~~~ta~~~l~~~~--~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~-------  185 (326)
                      ++.+...|.  +.+..  .+++|++||.+|+|. |..++.+|+..|. .+|++++.+++-.+.+++    .+.       
T Consensus        57 is~P~~~a~--~le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~  133 (224)
T d1i1na_          57 ISAPHMHAY--ALELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR  133 (224)
T ss_dssp             ECCHHHHHH--HHHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS
T ss_pred             hhhhHHHHH--HHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccc
Confidence            333555553  45555  789999999999876 8888888887653 389999999987776542    221       


Q ss_pred             cEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          186 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       186 ~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ..+...+.   .      ...... .||.|+.+..-.......++.|+++ |++|..
T Consensus       134 ~~~~~gD~---~------~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpG-G~LV~p  180 (224)
T d1i1na_         134 VQLVVGDG---R------MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILP  180 (224)
T ss_dssp             EEEEESCG---G------GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             eEEEEeec---c------cccchhhhhhhhhhhcchhhcCHHHHhhcCCC-cEEEEE
Confidence            12221111   0      011112 7999997666656567889999998 999874

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.30  E-value=0.00096  Score=55.37  Aligned_cols=79  Identities=14%  Similarity=0.177  Sum_probs=54.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEE-E--cCCCCCCccHHHHHHH---hc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF-V--NSKNCGDKSVSQIIID---MT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~v-i--~~~~~~~~~~~~~i~~---~~  207 (326)
                      +|+++||+|+ ++||.++++.+...|+ +|+.+++++++.+.+    ++.+.... +  |..+  .++..+.+.+   ..
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS--RSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC--HHHHHHHHHHHHHHh
Confidence            5889999987 8999999999999999 999999998887654    23443222 2  2222  1223322333   33


Q ss_pred             CCCccEEEEcCCc
Q 020435          208 DGGADYCFECVGL  220 (326)
Q Consensus       208 ~~g~d~v~d~~g~  220 (326)
                      ++++|++++++|.
T Consensus        84 ~~~idilvnnAG~   96 (259)
T d2ae2a_          84 HGKLNILVNNAGI   96 (259)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCceEEEECCce
Confidence            3479999999885

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0014  Score=54.34  Aligned_cols=79  Identities=23%  Similarity=0.402  Sum_probs=54.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCC-cEEE----cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGV-TEFV----NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~-~~vi----~~~~~~~~~~~~~i~~~~~  208 (326)
                      +++++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+    ++.+. ..++    |-.+  .++..+.+.+...
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~--~~~v~~~v~~~~~   85 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIRS   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            5789999987 8999999999999999 999999999887654    33332 1222    3222  2333333333322


Q ss_pred             --CCccEEEEcCCc
Q 020435          209 --GGADYCFECVGL  220 (326)
Q Consensus       209 --~g~d~v~d~~g~  220 (326)
                        +++|++++++|.
T Consensus        86 ~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          86 QHSGVDICINNAGL   99 (257)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             hcCCCCEEEecccc
Confidence              389999998886

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00055  Score=56.38  Aligned_cols=77  Identities=19%  Similarity=0.328  Sum_probs=57.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CCc-EEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+.+. +.. .+.|...   .+..+.+.+.. +++|+++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~-~~id~lV   79 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEV-ERLDVLF   79 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHC-SCCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeeccc---ccccccccccc-ccceeEE
Confidence            5889999987 8999999999999999 999999999888876653 432 2223222   44555444433 3899999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      ++.|.
T Consensus        80 n~ag~   84 (245)
T d2ag5a1          80 NVAGF   84 (245)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            98886

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.26  E-value=0.00055  Score=57.19  Aligned_cols=79  Identities=25%  Similarity=0.356  Sum_probs=54.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcC---CcEEE--cCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG---VTEFV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g---~~~vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      +|+++||+|+ ++||.+.++.+...|+ +|+.+++++++.+.+. +++   ....+  |..+  .++..+.+.+...  +
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--DEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence            5889999987 8999999999999999 9999999998877643 333   22222  2222  2333333333322  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus        82 ~iD~lVnnAG~   92 (268)
T d2bgka1          82 KLDIMFGNVGV   92 (268)
T ss_dssp             CCCEEEECCCC
T ss_pred             Ccceecccccc
Confidence            89999998874

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.25  E-value=0.00049  Score=56.69  Aligned_cols=79  Identities=14%  Similarity=0.223  Sum_probs=55.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCc-EEE--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EFV--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~-~vi--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+ ++++.. ..+  |..+  .++..+.+.+...  +++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   81 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ--PAQWKAAVDTAVTAFGGL   81 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCC--HHHHHHHHHHHHHHhCCC
Confidence            5889999987 8999999999999999 999999999887765 445432 222  2222  1233333333332  389


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        82 dilinnAG~   90 (244)
T d1nffa_          82 HVLVNNAGI   90 (244)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEECCcc
Confidence            999999886

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.19  E-value=0.00052  Score=57.61  Aligned_cols=78  Identities=19%  Similarity=0.232  Sum_probs=54.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcEE-E--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF-V--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~v-i--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+ ++++.... +  |..+  .++..+.+.+...  +++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~i   80 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRS--LEDQKQAASRCVARFGKI   80 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEeccccc--HHHHHHHHHHHHHHhCCc
Confidence            5899999987 8999999999999999 999999999887664 44553322 2  2222  1223333333322  389


Q ss_pred             cEEEEcCC
Q 020435          212 DYCFECVG  219 (326)
Q Consensus       212 d~v~d~~g  219 (326)
                      |++++++|
T Consensus        81 dilvnnAG   88 (276)
T d1bdba_          81 DTLIPNAG   88 (276)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            99999887

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.19  E-value=0.00055  Score=56.77  Aligned_cols=79  Identities=25%  Similarity=0.326  Sum_probs=56.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHhcCCcEEE---cCCCCCCccHHHHHHHhcC--CCc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFV---NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-~~~~g~~~vi---~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+. +++++.....   |..+  .++..+.+.+...  +++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~~~~g~i   80 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTD--QASIDRCVAELLDRWGSI   80 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCC--HHHHHHHHHHHHHHhCCc
Confidence            4789999987 8999999999999999 99999999888775 4557654322   3222  2333333333322  389


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        81 DilVnnAg~   89 (256)
T d1k2wa_          81 DILVNNAAL   89 (256)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEeeccc
Confidence            999998885

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.19  E-value=0.0019  Score=49.71  Aligned_cols=96  Identities=7%  Similarity=0.011  Sum_probs=65.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      +.+|||+|+|.+|..+++.+...|. +|++++++.++.+.+.+ ++...+.....   .. ........ ...|.++.+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~~---~~-~~~~~~~i-~~~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDV---ND-DAALDAEV-AKHDLVISLI   75 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCT---TC-HHHHHHHH-TTSSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhcccccccccccc---cc-hhhhHhhh-hccceeEeec
Confidence            6799999999999999998888898 99999999999888655 44333322222   11 11111111 1578888877


Q ss_pred             CcHHHHHHHHHHhhcCCcEEEEec
Q 020435          219 GLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       219 g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ...........++..+ ..++...
T Consensus        76 ~~~~~~~~~~~~~~~~-~~~~~~~   98 (182)
T d1e5qa1          76 PYTFHATVIKSAIRQK-KHVVTTS   98 (182)
T ss_dssp             CGGGHHHHHHHHHHHT-CEEECSS
T ss_pred             cchhhhHHHHHHHhhc-cceeecc
Confidence            7766455666677776 6666554

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.17  E-value=0.0038  Score=44.51  Aligned_cols=92  Identities=10%  Similarity=-0.073  Sum_probs=64.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh--HHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~--~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      .|.+|||+|+|.+|..-++.+...|+ +|++++....  -.+++..-..+..-..-+  ..++         .++++|+-
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~--~~dl---------~~~~lv~~   78 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLTLVEGPFD--ETLL---------DSCWLAIA   78 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCEEEESSCC--GGGG---------TTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCceeeccCCC--HHHh---------CCCcEEee
Confidence            47899999999999999999999999 8887765433  233333323332221111  1222         27999999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.+....-.......++. |..|.+..
T Consensus        79 at~d~~~n~~i~~~a~~~-~ilVNv~D  104 (113)
T d1pjqa1          79 ATDDDTVNQRVSDAAESR-RIFCNVVD  104 (113)
T ss_dssp             CCSCHHHHHHHHHHHHHT-TCEEEETT
T ss_pred             cCCCHHHHHHHHHHHHHc-CCEEEeCC
Confidence            999988556777888887 98888764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.16  E-value=0.0024  Score=52.51  Aligned_cols=79  Identities=15%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEE-E--cCCCCCCccHHHHHHHhc--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF-V--NSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~v-i--~~~~~~~~~~~~~i~~~~--~  208 (326)
                      .++++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+    ++.|.+.. +  |..+  .++..+.+.+..  -
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK--KEEISEVINKILTEH   85 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            4778899987 8999999998889999 999999998876654    34554322 2  2222  122333333322  1


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|+++++.+.
T Consensus        86 g~iDilvnnag~   97 (251)
T d2c07a1          86 KNVDILVNNAGI   97 (251)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCceeeeecccc
Confidence            389999998875

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.15  E-value=0.001  Score=55.28  Aligned_cols=79  Identities=25%  Similarity=0.363  Sum_probs=54.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcE-EE--cCCCCCCccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--  208 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+    ++.|.+. .+  |..+  .++..+.+.+...  
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5889999987 8999999999999999 999999999887654    3345432 22  2222  1233333333322  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        81 g~iDilVnnaG~   92 (260)
T d1zema1          81 GKIDFLFNNAGY   92 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCeehhhhcc
Confidence            389999998874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.12  E-value=0.0012  Score=51.71  Aligned_cols=101  Identities=15%  Similarity=0.153  Sum_probs=67.0

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC-Cc-----------------EEEcCCC
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-VT-----------------EFVNSKN  193 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g-~~-----------------~vi~~~~  193 (326)
                      +....+.++++||..|+|. |..+..||+. |. +|++++.|++..+.+++.. ..                 .++..+-
T Consensus        13 ~~~l~~~~~~rvLd~GCG~-G~~a~~la~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHcCCCCCCEEEEecCcC-CHHHHHHHHc-CC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            5567788999999999876 7778888874 88 9999999999999887521 10                 1111111


Q ss_pred             CCCccHHHHHHHhcCCCccEEEEcCCc--------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          194 CGDKSVSQIIIDMTDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       194 ~~~~~~~~~i~~~~~~g~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                         ..+.....    ..+|.|++...-        ...++.+.+.|+++ |.+++...
T Consensus        90 ---~~l~~~~~----~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg-G~l~l~~~  139 (201)
T d1pjza_          90 ---FALTARDI----GHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLITL  139 (201)
T ss_dssp             ---SSSTHHHH----HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEEE
T ss_pred             ---cccccccc----cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC-cEEEEEEc
Confidence               11111111    168998874442        23467888999998 98876543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.0011  Score=54.78  Aligned_cols=102  Identities=19%  Similarity=0.360  Sum_probs=67.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-----HhcCCcEE-E--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-----KRFGVTEF-V--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-----~~~g~~~v-i--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      +|+++||+|+ ++||.+.++.+...|+ +|+.+++++++.+.+     ++.|.+.. +  |..+  .++..+.+.+... 
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN--YEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            4789999987 8999999999999999 999999998876543     33454322 2  2222  1233333333322 


Q ss_pred             -CCccEEEEcCCcH-------------------------HHHHHHHHHhhcC-CcEEEEecc
Q 020435          209 -GGADYCFECVGLA-------------------------SLVQEAYACCRKG-WGKTIVLGV  243 (326)
Q Consensus       209 -~g~d~v~d~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~g~  243 (326)
                       +++|++++++|..                         ...+.++..+++. +|++|.++.
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S  142 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS  142 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccccccc
Confidence             3899999998851                         1345566667432 378988875

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00023  Score=58.62  Aligned_cols=101  Identities=22%  Similarity=0.268  Sum_probs=71.3

Q ss_pred             hhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHH
Q 020435          129 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQ  201 (326)
Q Consensus       129 ~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~  201 (326)
                      ..+...+++++|++||=+|+|. |..+..+++..|+ +|++++.+++..+.+++    .|..   .++..+-   .    
T Consensus        23 ~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~---~----   93 (245)
T d1nkva_          23 ATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---A----   93 (245)
T ss_dssp             HHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---T----
T ss_pred             HHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhhHH---h----
Confidence            3466788999999999999865 5667778888898 99999999988776654    3532   2222211   1    


Q ss_pred             HHHHhc-CCCccEEEEcC------CcHHHHHHHHHHhhcCCcEEEEec
Q 020435          202 IIIDMT-DGGADYCFECV------GLASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       202 ~i~~~~-~~g~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                         ++. .+.||.|+..-      .-...+..+.+.|+|+ |+++...
T Consensus        94 ---~~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG-G~l~i~~  137 (245)
T d1nkva_          94 ---GYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  137 (245)
T ss_dssp             ---TCCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             ---hccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC-cEEEEEe
Confidence               122 23899997532      2245688889999998 9998764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.12  E-value=0.0011  Score=56.08  Aligned_cols=104  Identities=14%  Similarity=0.214  Sum_probs=71.5

Q ss_pred             hhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHH
Q 020435          130 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       130 ~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~  205 (326)
                      .+.+.+++++|++||=+|+|- |.++..+|+..|+ +|++++.|++..+.++    ..|....+....   .++     .
T Consensus        52 ~~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~---~d~-----~  121 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI---QGW-----E  121 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE---CCG-----G
T ss_pred             HHHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhh---hcc-----c
Confidence            366889999999999999864 4457788888999 9999999998866654    345322221111   111     1


Q ss_pred             hcCCCccEEEE-----cCCc----------HHHHHHHHHHhhcCCcEEEEeccC
Q 020435          206 MTDGGADYCFE-----CVGL----------ASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       206 ~~~~g~d~v~d-----~~g~----------~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ...+.||.|+.     .++.          +..++.+.++|+|+ |++++....
T Consensus       122 ~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l~~i~  174 (291)
T d1kpia_         122 EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT  174 (291)
T ss_dssp             GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEEEEEE
T ss_pred             ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEEEEEe
Confidence            12348998864     3332          34588999999998 999876543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00073  Score=55.97  Aligned_cols=81  Identities=19%  Similarity=0.217  Sum_probs=54.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEEEcCCCCCC-ccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGD-KSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~-~~~~~~i~~~~~--~g  210 (326)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.+...-.-+..+ ++..+.+.+...  ++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5889999987 8999999999999999 999999998876653    4455432221111111 223322333222  38


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus        89 iDilvnnAG~   98 (255)
T d1fmca_          89 VDILVNNAGG   98 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEeeeCCcC
Confidence            9999998885

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.002  Score=49.74  Aligned_cols=72  Identities=10%  Similarity=0.108  Sum_probs=52.1

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cC---CcEEEcCCCCCCccHHHHHHHhcCCCcc
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG---VTEFVNSKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g---~~~vi~~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      ..++.+|||.|+|+.+.+++..+...|+ +++.+.|+.++.+.+.+ +.   ....+..++            .....+|
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~------------~~~~~~d   81 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMDE------------LEGHEFD   81 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCSGG------------GTTCCCS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhccccccccccc------------ccccccc
Confidence            3578999999999999999999999999 89999999988776543 32   222222211            1112799


Q ss_pred             EEEEcCCcH
Q 020435          213 YCFECVGLA  221 (326)
Q Consensus       213 ~v~d~~g~~  221 (326)
                      ++++|....
T Consensus        82 liIN~Tp~G   90 (170)
T d1nyta1          82 LIINATSSG   90 (170)
T ss_dssp             EEEECCSCG
T ss_pred             eeecccccC
Confidence            999998654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.09  E-value=0.0016  Score=54.05  Aligned_cols=107  Identities=16%  Similarity=0.217  Sum_probs=73.3

Q ss_pred             hhhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----c--C-CcEEEcCCCCCCccHH
Q 020435          129 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----F--G-VTEFVNSKNCGDKSVS  200 (326)
Q Consensus       129 ~~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~--g-~~~vi~~~~~~~~~~~  200 (326)
                      +.+...+++++|++||=.|+|+ |.+...||+..|. .+|+.++.+++..+.+++    +  + .+.+-...    .+..
T Consensus        86 s~Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~----~d~~  160 (264)
T d1i9ga_          86 AQIVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV----SDLA  160 (264)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC----SCGG
T ss_pred             HHHHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe----cccc
Confidence            3467789999999999998876 7888889998763 389999999998887754    2  1 22221111    1111


Q ss_pred             HHHHHhcCCCccEEE-EcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          201 QIIIDMTDGGADYCF-ECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       201 ~~i~~~~~~g~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +  .....+.+|.|| |...-...+..+.+.|+++ |+++.+..
T Consensus       161 ~--~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpG-G~lv~~~P  201 (264)
T d1i9ga_         161 D--SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA  201 (264)
T ss_dssp             G--CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             c--ccccCCCcceEEEecCCHHHHHHHHHhccCCC-CEEEEEeC
Confidence            1  011123899887 5444445688999999998 99988743

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.09  E-value=0.0002  Score=58.68  Aligned_cols=97  Identities=18%  Similarity=0.221  Sum_probs=61.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCC----ccHHHHHHHhcC-CCccE
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD----KSVSQIIIDMTD-GGADY  213 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~----~~~~~~i~~~~~-~g~d~  213 (326)
                      +.+|||+|+ +++|.+.++.+...|+ +|+.+++++++...     ....+..+. ..    ....+.+..... +++|+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~iD~   74 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQAD-----SNILVDGNK-NWTEQEQSILEQTASSLQGSQVDG   74 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTSS-----EEEECCTTS-CHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhccc-----ccceecccc-CchhHHHHHHHHHHHHhcCCCeeE
Confidence            458999987 8999999999999999 99999987654211     111111111 00    111222223223 38999


Q ss_pred             EEEcCCcH--------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          214 CFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       214 v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +++++|..                          ...+..+..++++ |+++.++..
T Consensus        75 linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~Iv~isS~  130 (235)
T d1ooea_          75 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAA  130 (235)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred             EEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-eEEEEeccH
Confidence            99988740                          1234556677887 999998753

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.09  E-value=0.00073  Score=55.84  Aligned_cols=79  Identities=22%  Similarity=0.258  Sum_probs=54.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcC---CcEEE--cCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG---VTEFV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g---~~~vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      +|+++||+|+ ++||.+.++.+...|+ +|+.+++++++.+.+. .++   ....+  |..+  .++..+.+.+...  +
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD--EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC--HHHHHHHHHHHHHHhC
Confidence            5889999987 8999999999999999 9999999998877653 332   11222  2222  1222222332222  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus        82 ~iDiLVnnAg~   92 (251)
T d1zk4a1          82 PVSTLVNNAGI   92 (251)
T ss_dssp             SCCEEEECCCC
T ss_pred             CceEEEecccc
Confidence            89999998886

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.003  Score=53.50  Aligned_cols=102  Identities=21%  Similarity=0.289  Sum_probs=65.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh---------hHHHH----HHhcCCcEEEcCCCCCCccHHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS---------EKFEI----GKRFGVTEFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~---------~~~~~----~~~~g~~~vi~~~~~~~~~~~~~i~  204 (326)
                      +|+++||+|+ ++||.+.++.+...|+ +|++++++.         +..+.    +...+.....+..+  .++..+.+.
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~v~   82 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS--VEAGEKLVK   82 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC--GGGHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccch--HHHHHHHHH
Confidence            4889999987 8999999999999999 999986543         22322    22334444455444  133333333


Q ss_pred             HhcC--CCccEEEEcCCcH-------------------------HHHHHHHHHhhc-CCcEEEEecc
Q 020435          205 DMTD--GGADYCFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~--~g~d~v~d~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~  243 (326)
                      +...  +++|++++++|..                         ...+.++..|++ ++|++|.++.
T Consensus        83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS  149 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTAS  149 (302)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCC
Confidence            3322  3899999998851                         124455555532 1389999875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.08  E-value=0.0041  Score=51.33  Aligned_cols=81  Identities=21%  Similarity=0.305  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh-hHHHHH-----HhcCCcEEEcCCCCCC-ccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIG-----KRFGVTEFVNSKNCGD-KSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~-~~~~~~-----~~~g~~~vi~~~~~~~-~~~~~~i~~~~~--  208 (326)
                      +|+++||+|+ ++||.+.++.+...|+ +|+.+++++ +..+.+     ...|.....-.-+..+ ++..+.+.+...  
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            5789999987 8999999999999999 999999864 444332     2234433221122111 223333333222  


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus        82 G~iDiLVnnAG~   93 (260)
T d1x1ta1          82 GRIDILVNNAGI   93 (260)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCcEEEeeccc
Confidence            389999999885

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.07  E-value=0.0012  Score=54.09  Aligned_cols=104  Identities=18%  Similarity=0.244  Sum_probs=69.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHhcCCcEEEcCCCCC-CccHHHHHHHhcC--CCccE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCG-DKSVSQIIIDMTD--GGADY  213 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-~~~~g~~~vi~~~~~~-~~~~~~~i~~~~~--~g~d~  213 (326)
                      .|+++||+|+ +++|.+.++-+...|+ +|+.+.++.++.+. .++++.+...-.-++. .++..+.+.+...  +++|+
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDi   82 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   82 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence            5889999987 8999999999999999 99999999988765 4557754322111211 2233333333332  38999


Q ss_pred             EEEcCCcH-------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          214 CFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       214 v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      .+++++..                         ...+..+..+..+ +.++..+..
T Consensus        83 LinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~-~~i~~~ss~  137 (241)
T d2a4ka1          83 VAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG-GSLVLTGSV  137 (241)
T ss_dssp             EEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-CEEEEECCC
T ss_pred             eccccccccccchhhhhccccccccccccccccccccccccccccc-cceeecccc
Confidence            99988752                         1244556677776 777766553

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.06  E-value=0.0052  Score=45.00  Aligned_cols=76  Identities=17%  Similarity=0.262  Sum_probs=56.9

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      .+|+|.|.|.+|..+++.+...|. .|++++.++++.+.+++ ++.. ++..+.    .-.+.+++.--..+|.++-+.+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~-vi~Gd~----~~~~~l~~~~i~~a~~vv~~t~   74 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL-VINGDC----TKIKTLEDAGIEDADMYIAVTG   74 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE-EEESCT----TSHHHHHHTTTTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhh-hccCcc----cchhhhhhcChhhhhhhcccCC
Confidence            379999999999999999999998 99999999999888765 5653 444333    1123344443238999998888


Q ss_pred             cHH
Q 020435          220 LAS  222 (326)
Q Consensus       220 ~~~  222 (326)
                      +..
T Consensus        75 ~d~   77 (132)
T d1lssa_          75 KEE   77 (132)
T ss_dssp             CHH
T ss_pred             cHH
Confidence            865

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.06  E-value=0.0021  Score=52.38  Aligned_cols=73  Identities=21%  Similarity=0.167  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      +++++||+|+ +++|.++++.+...|+ +|+.++++++..+   +.+...+...-.   +. .+.+.+.. +++|+++++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~---~~~~~~~~~Dv~---~~-~~~~~~~~-g~iD~lVnn   73 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLK---RSGHRYVVCDLR---KD-LDLLFEKV-KEVDILVLN   73 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH---HTCSEEEECCTT---TC-HHHHHHHS-CCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH---hcCCcEEEcchH---HH-HHHHHHHh-CCCcEEEec
Confidence            4789999987 8999999999999999 9999999876554   444433322111   22 33343333 379999998


Q ss_pred             CCc
Q 020435          218 VGL  220 (326)
Q Consensus       218 ~g~  220 (326)
                      +|.
T Consensus        74 AG~   76 (234)
T d1o5ia_          74 AGG   76 (234)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.05  E-value=0.0028  Score=52.76  Aligned_cols=104  Identities=23%  Similarity=0.287  Sum_probs=68.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh-hHHHH----HHhcCCcEEEcCCCCC-CccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEI----GKRFGVTEFVNSKNCG-DKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~-~~~~~----~~~~g~~~vi~~~~~~-~~~~~~~i~~~~~--~  209 (326)
                      +|+++||+|+ ++||.++++.+...|+ +|+.++++. +..+.    +++.+.+.....-+.. .+++.+.+.+...  +
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            4889999987 8999999999999999 899887664 33332    3455544332222211 2334444443332  3


Q ss_pred             CccEEEEcCCcH-------------------------HHHHHHHHHhhcCCcEEEEeccC
Q 020435          210 GADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       210 g~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++|+++++.+..                         ...+.+...|.++ |+.+.++..
T Consensus        96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-g~~i~i~s~  154 (272)
T d1g0oa_          96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI  154 (272)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred             CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc-ccccccccc
Confidence            899999988751                         1355667778887 888887653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.04  E-value=0.0009  Score=56.22  Aligned_cols=103  Identities=11%  Similarity=0.143  Sum_probs=69.8

Q ss_pred             hhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHH
Q 020435          130 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       130 ~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~  205 (326)
                      .+.+.+++++|++||-+|+|. |.++..+++..|+ +|++++.|++..+.+++    .|....+....   .++.     
T Consensus        43 ~~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~---~d~~-----  112 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL---QGWE-----  112 (280)
T ss_dssp             HHHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCGG-----
T ss_pred             HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhh---hhhh-----
Confidence            366778999999999999865 3456778888899 99999999998877654    34211111111   1111     


Q ss_pred             hcCCCccEEEE-----cCCc---HHHHHHHHHHhhcCCcEEEEecc
Q 020435          206 MTDGGADYCFE-----CVGL---ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       206 ~~~~g~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..++.+|.|+.     .++.   +..++.+.+.|+|+ |++++-..
T Consensus       113 ~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg-G~~~i~~i  157 (280)
T d2fk8a1         113 DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSS  157 (280)
T ss_dssp             GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred             hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC-ceEEEEEe
Confidence            12347898863     3332   34588899999998 99987543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.03  E-value=0.0011  Score=54.02  Aligned_cols=93  Identities=18%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      ..++.+||=+|+|. |..+..+++ .|+ +|++++.+++..+.+++.+....+..+.   .++     ....+.+|+|+.
T Consensus        40 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~---~~l-----~~~~~~fD~ii~  108 (246)
T d2avna1          40 LKNPCRVLDLGGGT-GKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA---EDL-----PFPSGAFEAVLA  108 (246)
T ss_dssp             CCSCCEEEEETCTT-CHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT---TSC-----CSCTTCEEEEEE
T ss_pred             cCCCCEEEEECCCC-chhcccccc-cce-EEEEeecccccccccccccccccccccc---ccc-----ccccccccceee
Confidence            45788999999885 888888876 488 9999999999999998877655554433   221     122248999986


Q ss_pred             cCCc-------HHHHHHHHHHhhcCCcEEEEe
Q 020435          217 CVGL-------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       217 ~~g~-------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ....       ..+++.+.++|++| |.++..
T Consensus       109 ~~~~~~~~~d~~~~l~~i~r~Lk~g-G~~ii~  139 (246)
T d2avna1         109 LGDVLSYVENKDKAFSEIRRVLVPD-GLLIAT  139 (246)
T ss_dssp             CSSHHHHCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ecchhhhhhhHHHHHHHHHhhcCcC-cEEEEE
Confidence            5432       23577888999998 988764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.01  E-value=0.0021  Score=49.22  Aligned_cols=86  Identities=19%  Similarity=0.208  Sum_probs=60.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC-cEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      +|.|+|.|.+|...++.++..|. +|++.++++++.+.+++.+. +...+..+    .    +     ...|+||-|+..
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~----~----~-----~~~DiIilavp~   67 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLS----L----L-----QTAKIIFLCTPI   67 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGG----G----G-----TTCSEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeecc----c----c-----cccccccccCcH
Confidence            68999999999999888888998 99999999999999888884 44332111    1    1     268999988875


Q ss_pred             HH---HHHHHHHHhhcCCcEEEEec
Q 020435          221 AS---LVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       221 ~~---~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ..   .+++....+.++ ..++.++
T Consensus        68 ~~~~~vl~~l~~~l~~~-~iv~~~~   91 (165)
T d2f1ka2          68 QLILPTLEKLIPHLSPT-AIVTDVA   91 (165)
T ss_dssp             HHHHHHHHHHGGGSCTT-CEEEECC
T ss_pred             hhhhhhhhhhhhhcccc-cceeecc
Confidence            54   233333444554 4444443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.00  E-value=0.0014  Score=55.26  Aligned_cols=80  Identities=13%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-----HhcCCc-EEEcCCCCCCcc-HHHHHHHhc--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-----KRFGVT-EFVNSKNCGDKS-VSQIIIDMT--D  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-----~~~g~~-~vi~~~~~~~~~-~~~~i~~~~--~  208 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.++++.++.+.+     .+.|.. ..+..+- .+.+ ..+.+....  .
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~-~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDV-RDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCT-TCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecc-cChHHHHHHhhhhhhhc
Confidence            4789999987 9999999999999999 999999998876543     223433 2332221 1122 222222222  2


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +++|++++++|.
T Consensus       102 g~iDilvnnAg~  113 (294)
T d1w6ua_         102 GHPNIVINNAAG  113 (294)
T ss_dssp             CSCSEEEECCCC
T ss_pred             cccchhhhhhhh
Confidence            389999999885

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.00  E-value=0.0016  Score=53.79  Aligned_cols=78  Identities=17%  Similarity=0.250  Sum_probs=53.3

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEE-E--cCCCCCCccHHHHHHHhcC--C
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF-V--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~v-i--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      |+.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.+.. +  |..+  .++..+.+.+...  +
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~--~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS--VPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            567799987 8999999999999999 999999998876654    34554322 2  2222  1233333333322  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|++++++|.
T Consensus        79 ~iDilVnnAG~   89 (257)
T d2rhca1          79 PVDVLVNNAGR   89 (257)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            89999999885

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.99  E-value=0.0033  Score=48.63  Aligned_cols=86  Identities=17%  Similarity=0.133  Sum_probs=58.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEc-------CCCCCCccHHHHHHHhcCCCcc
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN-------SKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~-------~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      ..+|.|+|+|.+|++++..+...|. .|.+.++++++.+.+++.+......       .......+..+.+.     .+|
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~aD   74 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK-----DAD   74 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT-----TCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc-----CCC
Confidence            3689999999999999999999998 9999999999988887654311110       00000012222221     699


Q ss_pred             EEEEcCCcHHHHHHHHHHhh
Q 020435          213 YCFECVGLASLVQEAYACCR  232 (326)
Q Consensus       213 ~v~d~~g~~~~~~~~~~~l~  232 (326)
                      ++|-|+.... ....+..++
T Consensus        75 ~iii~v~~~~-~~~~~~~i~   93 (184)
T d1bg6a2          75 VILIVVPAIH-HASIAANIA   93 (184)
T ss_dssp             EEEECSCGGG-HHHHHHHHG
T ss_pred             EEEEEEchhH-HHHHHHHhh
Confidence            9999998765 444444333

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.98  E-value=0.0039  Score=51.22  Aligned_cols=75  Identities=11%  Similarity=0.047  Sum_probs=51.7

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC----CcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g----~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      |+||+|+ +++|+++++.+...|+ +|+.++++.++.+.++..+    ...+.+.++  .+.+.+.+.+.. +++|++++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~--~~~~~~~~~~~~-G~iDiLVn   77 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE--PAELIEAVTSAY-GQVDVLVS   77 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS--HHHHHHHHHHHH-SCCCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHH--HHHHHHHHHHHc-CCCCEEEE
Confidence            7899987 8999999999999999 9999999888877765432    223333222  223333443433 38999998


Q ss_pred             cCCc
Q 020435          217 CVGL  220 (326)
Q Consensus       217 ~~g~  220 (326)
                      ++|.
T Consensus        78 NAg~   81 (252)
T d1zmta1          78 NDIF   81 (252)
T ss_dssp             ECCC
T ss_pred             CCcC
Confidence            7663

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.0018  Score=54.39  Aligned_cols=99  Identities=12%  Similarity=0.119  Sum_probs=70.4

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC-c--EEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-T--EFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~~i  203 (326)
                      +.+.+++++|++||-+|+|- |..++.+|+..|+ +|+++..|++..+++++    .|. +  .+..      .++    
T Consensus        54 ~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~------~d~----  121 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLL------AGW----  121 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE------SCG----
T ss_pred             HHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHH------hhh----
Confidence            56788999999999999876 6777889998999 99999999998877654    331 1  2221      111    


Q ss_pred             HHhcCCCccEEEE-----cCCc---HHHHHHHHHHhhcCCcEEEEecc
Q 020435          204 IDMTDGGADYCFE-----CVGL---ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       204 ~~~~~~g~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      + -.++.+|.|+.     .++.   ...++.+.++|+|+ |++++...
T Consensus       122 ~-~~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg-G~~~l~~i  167 (285)
T d1kpga_         122 E-QFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI  167 (285)
T ss_dssp             G-GCCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred             h-cccccccceeeehhhhhcCchhHHHHHHHHHhhcCCC-CcEEEEEE
Confidence            1 11247888754     3432   34578899999998 99987554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0013  Score=54.43  Aligned_cols=79  Identities=24%  Similarity=0.282  Sum_probs=54.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc----C-CcE-E--EcCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----G-VTE-F--VNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~----g-~~~-v--i~~~~~~~~~~~~~i~~~~~  208 (326)
                      .|+++||+|+ +++|.++++.+...|+ +|+.++++.++.+.+. ++    + ... .  .|..+  .+++.+.+.+...
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   78 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC--HHHHHHHHHHHHH
Confidence            4889999987 8999999999999999 9999999998866542 22    2 111 1  23322  2333333333332


Q ss_pred             --CCccEEEEcCCc
Q 020435          209 --GGADYCFECVGL  220 (326)
Q Consensus       209 --~g~d~v~d~~g~  220 (326)
                        +++|++++++|.
T Consensus        79 ~~G~iDilVnnAg~   92 (254)
T d2gdza1          79 HFGRLDILVNNAGV   92 (254)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCcCeecccccc
Confidence              389999999886

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.94  E-value=0.0023  Score=52.86  Aligned_cols=103  Identities=21%  Similarity=0.339  Sum_probs=66.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEc-CChhHHHH----HHhcCCcEE-EcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEI----GKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~-~~~~~~~~----~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      .|+++||+|+ +++|.+.++.+...|+ +|+.+. ++++..+.    +++.|.+.. +..+-.+.++..+.+.+...  +
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            5899999987 8999999999999999 888765 45444443    345665432 32221012233333333322  2


Q ss_pred             CccEEEEcCCcH-------------------------HHHHHHHHHhhcCCcEEEEecc
Q 020435          210 GADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       210 g~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ++|++++++|..                         ...+.++..++++ |.++.+..
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~~iii~s  141 (259)
T d1ja9a_          84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSS  141 (259)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC-Cccccccc
Confidence            899999988862                         1355667778887 88877754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.94  E-value=0.0013  Score=54.59  Aligned_cols=79  Identities=22%  Similarity=0.222  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-HH----HHHhcCCcEE-E--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FE----IGKRFGVTEF-V--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-~~----~~~~~g~~~v-i--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      +|+++||+|+ ++||.++++.+...|+ +|+.++++.+. .+    .+++.|.+.. +  |..+  .++..+.+.+... 
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~   82 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV--ESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            5789999987 8999999999999999 99999987543 32    3445664322 2  2222  1223333333322 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        83 ~G~iDiLVnnAG~   95 (261)
T d1geea_          83 FGKLDVMINNAGL   95 (261)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCEeecccee
Confidence             389999998885

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.91  E-value=0.00094  Score=55.02  Aligned_cols=79  Identities=20%  Similarity=0.194  Sum_probs=54.7

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCC-EEEEEcCChhHHHHHHhcCCc--EEE--cCCCCCCcc---HHHHHHHhcCC-
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVT--EFV--NSKNCGDKS---VSQIIIDMTDG-  209 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~-~V~~~~~~~~~~~~~~~~g~~--~vi--~~~~~~~~~---~~~~i~~~~~~-  209 (326)
                      ..+|||+|+ +++|.++++.+...|+. +|+.+.++.++.+.+++....  +++  |..+  .++   +.+.+.+..+. 
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~~~~   80 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC--DKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTC--HHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCC--HHHHHHHHHHHHHHhCCC
Confidence            478999987 89999999888878853 789999999988887764322  223  2222  122   33344444444 


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      +.|++++++|.
T Consensus        81 ~idilinnAG~   91 (250)
T d1yo6a1          81 GLSLLINNAGV   91 (250)
T ss_dssp             CCCEEEECCCC
T ss_pred             CeEEEEEcCcc
Confidence            79999999884

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.91  E-value=0.0023  Score=52.54  Aligned_cols=79  Identities=22%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH--HHHHHhcCCcEEE---cCCCCCCccHHHHHHHhcC--CC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVTEFV---NSKNCGDKSVSQIIIDMTD--GG  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~--~~~~~~~g~~~vi---~~~~~~~~~~~~~i~~~~~--~g  210 (326)
                      +|+++||+|+ ++||.++++.+...|+ +|+.+++++++  .+.+++.|.+...   |..+  .++..+.+.+...  ++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~--~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ--PGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC--HHHHHHHHHHHHHHcCC
Confidence            4789999987 8999999999999999 99999987643  2345666643222   2222  1223333333322  38


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|++++++|.
T Consensus        81 iDilVnnAG~   90 (247)
T d2ew8a1          81 CDILVNNAGI   90 (247)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999886

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.89  E-value=0.0014  Score=54.75  Aligned_cols=79  Identities=24%  Similarity=0.266  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCC--cE--EE--cCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--TE--FV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~--~~--vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      +|+++||+|+ ++||.+.++.+...|+ +|+.+++++++.+.+.    +.+.  ..  .+  |..+  .++..+.+.+..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   79 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE--ASGQDDIINTTL   79 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC--HHHHHHHHHHHH
Confidence            5889999987 8999999999999999 9999999988776543    3332  11  22  3222  123333333332


Q ss_pred             C--CCccEEEEcCCc
Q 020435          208 D--GGADYCFECVGL  220 (326)
Q Consensus       208 ~--~g~d~v~d~~g~  220 (326)
                      .  +++|++++++|.
T Consensus        80 ~~~G~iDilVnnAG~   94 (274)
T d1xhla_          80 AKFGKIDILVNNAGA   94 (274)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCceEEEeeccc
Confidence            2  389999998774

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.89  E-value=0.0024  Score=52.81  Aligned_cols=79  Identities=27%  Similarity=0.314  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hc--CCcE-EE--cCCCCCCccHHHHHHHhcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RF--GVTE-FV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~--g~~~-vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      +|+++||+|+ ++||.++++.+...|+ +|+.+++++++.+.+.    +.  +... .+  |..+  .++..+.+.+...
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD--EAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC--HHHHHHHHHHHHH
Confidence            4789999987 8999999999999999 9999999998876542    22  2221 12  3222  1333333333322


Q ss_pred             --CCccEEEEcCCc
Q 020435          209 --GGADYCFECVGL  220 (326)
Q Consensus       209 --~g~d~v~d~~g~  220 (326)
                        +++|++++++|.
T Consensus        80 ~~G~iDiLVnnAG~   93 (258)
T d1iy8a_          80 RFGRIDGFFNNAGI   93 (258)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HhCCCCEEEECCcc
Confidence              389999998873

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0016  Score=54.37  Aligned_cols=100  Identities=19%  Similarity=0.291  Sum_probs=62.7

Q ss_pred             CCCEE-EEEcc-CHHHHHHHH-HHHHcCCCEEEEEcCChhHHHHH----HhcCCc-EEE--cCCCCCCccH---HHHHHH
Q 020435          139 VGSTV-VIFGL-GSIGLAVAE-GARLCGATRIIGVDVISEKFEIG----KRFGVT-EFV--NSKNCGDKSV---SQIIID  205 (326)
Q Consensus       139 ~~~~v-lI~Ga-g~~G~~a~~-la~~~g~~~V~~~~~~~~~~~~~----~~~g~~-~vi--~~~~~~~~~~---~~~i~~  205 (326)
                      +|.+| ||+|+ ++||+++++ |++.-|+ +|+.+++++++.+.+    ++.+.. +++  |..+  .++.   .+.+.+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~--~~sv~~~~~~~~~   77 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD--LQSIRALRDFLRK   77 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCC--HHHHHHHHHHHHH
Confidence            36677 66687 899998876 4556688 999999999887654    333422 222  3322  1222   223333


Q ss_pred             hcCCCccEEEEcCCcH-------------------------HHHHHHHHHhhcCCcEEEEecc
Q 020435          206 MTDGGADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       206 ~~~~g~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .. +++|++++++|..                         ...+.++..|++. |+++.++.
T Consensus        78 ~~-g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-g~ivnisS  138 (275)
T d1wmaa1          78 EY-GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSS  138 (275)
T ss_dssp             HH-SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECC
T ss_pred             hc-CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccc
Confidence            22 3899999988851                         1233445566786 99998865

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.88  E-value=0.0012  Score=54.78  Aligned_cols=79  Identities=23%  Similarity=0.283  Sum_probs=53.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-----HhcCCcEE-E--cCCCCCCccHHHHHHHhcC-
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-----KRFGVTEF-V--NSKNCGDKSVSQIIIDMTD-  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-----~~~g~~~v-i--~~~~~~~~~~~~~i~~~~~-  208 (326)
                      +|+++||+|+ +++|.++++.+...|+ +|+.++++.++.+.+     ++.|.+.. +  |..+  .++..+.+.+... 
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN--TDIVTKTIQQIDAD   84 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHH
Confidence            4789999987 8999999999999999 999999988765432     33454322 2  2222  1223333333322 


Q ss_pred             -CCccEEEEcCCc
Q 020435          209 -GGADYCFECVGL  220 (326)
Q Consensus       209 -~g~d~v~d~~g~  220 (326)
                       +++|++++++|.
T Consensus        85 ~g~iDilVnnAg~   97 (260)
T d1h5qa_          85 LGPISGLIANAGV   97 (260)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             hCCCcEecccccc
Confidence             389999998874

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00036  Score=59.91  Aligned_cols=106  Identities=19%  Similarity=0.279  Sum_probs=69.4

Q ss_pred             hhhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cC-----------CcE--EEcC
Q 020435          130 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FG-----------VTE--FVNS  191 (326)
Q Consensus       130 ~l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g-----------~~~--vi~~  191 (326)
                      .+...+++++|++||=.|+|. |.++..||+..|. ++|+.++.+++..+.+++    ++           .+.  +...
T Consensus        89 ~Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~  167 (324)
T d2b25a1          89 MILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  167 (324)
T ss_dssp             HHHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HHHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec
Confidence            356778999999999999876 8888899998764 389999999988777653    11           111  1111


Q ss_pred             CCCCCccHHHHHHHhcCCCccEEE-EcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          192 KNCGDKSVSQIIIDMTDGGADYCF-ECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       192 ~~~~~~~~~~~i~~~~~~g~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +-   .++..   ....+.+|.|| |-..-...+..+.+.|+++ |+++.+..
T Consensus       168 di---~~~~~---~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpG-G~lv~~~P  213 (324)
T d2b25a1         168 DI---SGATE---DIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV  213 (324)
T ss_dssp             CT---TCCC----------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred             ch---hhccc---ccCCCCcceEeecCcCHHHHHHHHHHhccCC-CEEEEEeC
Confidence            11   11111   11122689887 5433334588999999998 99998753

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.0018  Score=53.43  Aligned_cols=81  Identities=17%  Similarity=0.347  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g--~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|+.+.++++..+.++    ..+....+..+-.+.++..+.+.+...  +
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcC
Confidence            5889999997 5  799999999999999 8999998876554433    234334443222112222222332221  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|+++++++.
T Consensus        86 ~iDilVnnag~   96 (256)
T d1ulua_          86 GLDYLVHAIAF   96 (256)
T ss_dssp             SEEEEEECCCC
T ss_pred             CceEEEecccc
Confidence            89999998864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.84  E-value=0.00066  Score=55.03  Aligned_cols=109  Identities=19%  Similarity=0.184  Sum_probs=66.5

Q ss_pred             ccchhhhhhhhhhhhc--ccCCCCEEEEEccCHHHHHHHHHH---HHcCC---CEEEEEcCChhHHHHHHh---------
Q 020435          120 LSCGVSTGVGAAWRTA--NVEVGSTVVIFGLGSIGLAVAEGA---RLCGA---TRIIGVDVISEKFEIGKR---------  182 (326)
Q Consensus       120 l~~~~~ta~~~l~~~~--~~~~~~~vlI~Gag~~G~~a~~la---~~~g~---~~V~~~~~~~~~~~~~~~---------  182 (326)
                      ++.+...|.  +.+..  .++++++||.+|+|. |..++.++   ...|.   .+|+.++.+++-.+.+++         
T Consensus        61 is~P~~~a~--~l~~L~~~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~  137 (223)
T d1r18a_          61 ISAPHMHAF--ALEYLRDHLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM  137 (223)
T ss_dssp             ECCHHHHHH--HHHHTTTTCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             eehhhhHHH--HHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh
Confidence            333555553  45544  789999999998754 44444444   44442   279999998876665532         


Q ss_pred             cCCc--EEEcCCCCCCccHHHHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          183 FGVT--EFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       183 ~g~~--~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .+..  .++..+.      .   ..+... .||.|+-+.+-+..-...++.|+++ |+++..
T Consensus       138 ~~~~nv~~~~~d~------~---~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~g-G~lV~p  189 (223)
T d1r18a_         138 LDSGQLLIVEGDG------R---KGYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVP  189 (223)
T ss_dssp             HHHTSEEEEESCG------G---GCCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             cCccEEEEEeccc------c---cccccccceeeEEEEeechhchHHHHHhcCCC-cEEEEE
Confidence            1211  2222221      0   011122 7999987666655456888999998 999874

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.83  E-value=0.003  Score=51.14  Aligned_cols=101  Identities=21%  Similarity=0.260  Sum_probs=68.9

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~  204 (326)
                      +...+.+++|++||=+|+|. |..+..+++. +. +|++++.|++..+.+++    .+.+  .++..+.   .++     
T Consensus         8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~---~~~-----   76 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESL-----   76 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBC-----
T ss_pred             HHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhccccccccccccccc---ccc-----
Confidence            66889999999999999876 7777777775 55 89999999987776643    3332  2222111   111     


Q ss_pred             HhcCCCccEEEEcCCc------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          205 DMTDGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ...++.+|+|+.+-.-      ...++.+.+.|+|+ |.++....
T Consensus        77 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~~~~~~~  120 (234)
T d1xxla_          77 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD-GRFLLVDH  120 (234)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccccceeeeeceeecccCHHHHHHHHHHeeCCC-cEEEEEEc
Confidence            1122379999864332      34588999999998 99888644

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0012  Score=52.42  Aligned_cols=97  Identities=15%  Similarity=0.111  Sum_probs=63.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .++|+|+|+ |.+|..+++.+...|. +|.+++|++++.......+++ ++..+-   .+ .+.+.+... ++|+||.++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~-~~~gD~---~d-~~~l~~al~-~~d~vi~~~   75 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAH-VVVGDV---LQ-AADVDKTVA-GQDAVIVLL   75 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSE-EEESCT---TS-HHHHHHHHT-TCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccccccccc-cccccc---cc-hhhHHHHhc-CCCEEEEEe
Confidence            468999997 9999999998888898 999999998886655445554 333332   22 233433332 689999998


Q ss_pred             CcH----------HHHHHHHHHhhcC-CcEEEEecc
Q 020435          219 GLA----------SLVQEAYACCRKG-WGKTIVLGV  243 (326)
Q Consensus       219 g~~----------~~~~~~~~~l~~~-~G~~v~~g~  243 (326)
                      |..          ......++.++.. -.+++.++.
T Consensus        76 g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          76 GTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             ccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence            752          1123445555543 136777754

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0024  Score=53.95  Aligned_cols=80  Identities=16%  Similarity=0.267  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hc--------CCcEE-E--cCCCCCCccHHHHHH
Q 020435          138 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF--------GVTEF-V--NSKNCGDKSVSQIII  204 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~--------g~~~v-i--~~~~~~~~~~~~~i~  204 (326)
                      -+|+++||+|+ ++||.++++.+...|+ +|+++++++++.+.+. ++        +...+ +  |..+  .++..+.+.
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~   86 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN--EEEVNNLVK   86 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC--HHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC--HHHHHHHHH
Confidence            36899999987 8999999999999999 9999999988765432 11        22221 2  2222  123333333


Q ss_pred             HhcC--CCccEEEEcCCc
Q 020435          205 DMTD--GGADYCFECVGL  220 (326)
Q Consensus       205 ~~~~--~g~d~v~d~~g~  220 (326)
                      +...  +++|+++++++.
T Consensus        87 ~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          87 STLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHhCCeEEEEeeccc
Confidence            3322  389999998875

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.81  E-value=0.0013  Score=54.96  Aligned_cols=79  Identities=27%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCC--cEE--E--cCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--TEF--V--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~--~~v--i--~~~~~~~~~~~~~i~~~~  207 (326)
                      +|+++||+|+ ++||.++++.+...|+ +|+.+++++++.+.+.    +.+.  ..+  +  |..+  .++..+.+.+..
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~   80 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT--EDGQDQIINSTL   80 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC--HHHHHHHHHHHH
Confidence            4789999987 8999999999999999 9999999998876543    2331  112  2  3222  122333333332


Q ss_pred             C--CCccEEEEcCCc
Q 020435          208 D--GGADYCFECVGL  220 (326)
Q Consensus       208 ~--~g~d~v~d~~g~  220 (326)
                      .  +++|++++++|.
T Consensus        81 ~~~g~iDilvnnAG~   95 (272)
T d1xkqa_          81 KQFGKIDVLVNNAGA   95 (272)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCceEEEeCCcc
Confidence            2  389999998774

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0026  Score=49.58  Aligned_cols=96  Identities=15%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hc----CC-cEEEcCCCCCCccHHHHHHHhcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RF----GV-TEFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~----g~-~~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      ++.+|||.|+|+.+.+++..+...|+++++.+.|++++.+.+.    ++    .. ..+.+..+  ..++.+.+.     
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----   89 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD--QQAFAEALA-----   89 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC--HHHHHHHHH-----
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc--ccchhhhhc-----
Confidence            5789999999999999998888899888999999877655432    22    21 22333333  112222221     


Q ss_pred             CccEEEEcCCcHHH------HHHHHHHhhcCCcEEEEec
Q 020435          210 GADYCFECVGLASL------VQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       210 g~d~v~d~~g~~~~------~~~~~~~l~~~~G~~v~~g  242 (326)
                      .+|++++|..-...      +..-...+.++ ..++.+-
T Consensus        90 ~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~-~~v~Di~  127 (182)
T d1vi2a1          90 SADILTNGTKVGMKPLENESLVNDISLLHPG-LLVTECV  127 (182)
T ss_dssp             TCSEEEECSSTTSTTSCSCCSCCCGGGSCTT-CEEEECC
T ss_pred             ccceeccccCCccccccchhhhhHHHhhhcc-hhhHHhh
Confidence            58999999763220      01113456665 6666663

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.0061  Score=50.11  Aligned_cols=94  Identities=21%  Similarity=0.353  Sum_probs=63.8

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      .++|++||=.|+|. |.+++.+++ .|+ +|++++.+++..+.+++    .+.. .++.      .+..+   ....+.+
T Consensus       118 ~~~g~~VLDiGcGs-G~l~i~aa~-~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~------~d~~~---~~~~~~f  185 (254)
T d2nxca1         118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE------GSLEA---ALPFGPF  185 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE------SCHHH---HGGGCCE
T ss_pred             cCccCEEEEcccch-hHHHHHHHh-cCC-EEEEEECChHHHHHHHHHHHHcCCceeEEe------ccccc---ccccccc
Confidence            57899999999865 666665554 688 89999999998887764    3432 2332      12222   1222489


Q ss_pred             cEEEEcCCcHH---HHHHHHHHhhcCCcEEEEecc
Q 020435          212 DYCFECVGLAS---LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       212 d~v~d~~g~~~---~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      |+|+.......   .++.+.+.|+|+ |++++.|.
T Consensus       186 D~V~ani~~~~l~~l~~~~~~~LkpG-G~lilSgi  219 (254)
T d2nxca1         186 DLLVANLYAELHAALAPRYREALVPG-GRALLTGI  219 (254)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             chhhhccccccHHHHHHHHHHhcCCC-cEEEEEec
Confidence            99996555432   345678899998 99998664

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.77  E-value=0.0049  Score=50.68  Aligned_cols=83  Identities=18%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             ccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH-------HHHHHhcCCcEEE---cCCCCCCccHHHHHH
Q 020435          136 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FEIGKRFGVTEFV---NSKNCGDKSVSQIII  204 (326)
Q Consensus       136 ~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~-------~~~~~~~g~~~vi---~~~~~~~~~~~~~i~  204 (326)
                      ..+|+.++||+|+ |+||+++++.+...|+.+|+.+.++..+       .+.++..|....+   |..+  ..+..+.+.
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d--~~~~~~~~~   82 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD--RESVRELLG   82 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHH
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccch--HHHHHHhhc
Confidence            4678889999987 9999999999988898567777765322       2233446653222   2222  122333333


Q ss_pred             HhcCC-CccEEEEcCCc
Q 020435          205 DMTDG-GADYCFECVGL  220 (326)
Q Consensus       205 ~~~~~-g~d~v~d~~g~  220 (326)
                      ++... +.|.++++.+.
T Consensus        83 ~i~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          83 GIGDDVPLSAVFHAAAT   99 (259)
T ss_dssp             TSCTTSCEEEEEECCCC
T ss_pred             ccccccccccccccccc
Confidence            33334 89999998885

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.76  E-value=0.0011  Score=54.84  Aligned_cols=105  Identities=10%  Similarity=0.037  Sum_probs=63.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcEE--EcCCCCCC-ccHHHHHHHhcC--
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--VNSKNCGD-KSVSQIIIDMTD--  208 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~v--i~~~~~~~-~~~~~~i~~~~~--  208 (326)
                      +|++|||+|+ ++||.+++..+...|+ +|+++.+..++.+.+.+    .+...+  +..+...+ .++.+.+.+...  
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            4889999987 8999999999999999 88888776665444322    222122  21111001 223333333332  


Q ss_pred             CCccEEEEcCCcHH-----------------HHHHHHHHhh-----cCCcEEEEeccCC
Q 020435          209 GGADYCFECVGLAS-----------------LVQEAYACCR-----KGWGKTIVLGVDQ  245 (326)
Q Consensus       209 ~g~d~v~d~~g~~~-----------------~~~~~~~~l~-----~~~G~~v~~g~~~  245 (326)
                      +++|++++++|...                 ..+.++..+.     ++ |+++.++...
T Consensus        83 g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~-g~Ii~isS~~  140 (254)
T d1sbya1          83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPG-GIIANICSVT  140 (254)
T ss_dssp             SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC-EEEEEECCGG
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCC-ceEEEEechh
Confidence            38999999998621                 2334444552     34 8888887543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.75  E-value=0.0022  Score=53.25  Aligned_cols=79  Identities=23%  Similarity=0.240  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCC--c--EEE--cCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--T--EFV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~--~--~vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+.  .  +.+  |..+  .++..+.+.+..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~   80 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT--DAGQDEILSTTL   80 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC--HHHHHHHHHHHH
Confidence            5788999987 8999999999999999 9999999988876543    2331  1  122  3322  123333333332


Q ss_pred             C--CCccEEEEcCCc
Q 020435          208 D--GGADYCFECVGL  220 (326)
Q Consensus       208 ~--~g~d~v~d~~g~  220 (326)
                      .  +++|++++++|.
T Consensus        81 ~~~g~iDilvnnAG~   95 (264)
T d1spxa_          81 GKFGKLDILVNNAGA   95 (264)
T ss_dssp             HHHSCCCEEEECCC-
T ss_pred             HHhCCCCEeeccccc
Confidence            2  389999998874

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.75  E-value=0.0056  Score=51.01  Aligned_cols=102  Identities=14%  Similarity=0.083  Sum_probs=69.8

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i  203 (326)
                      +.....+.++++||=+|+|. |..+..+++..|+ +|++++.++...+.+++    .|..   .++..+.   .++    
T Consensus        59 l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~---~~l----  129 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI----  129 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccc---ccc----
Confidence            44556789999999999875 6677788888898 99999999988776654    3322   2332222   111    


Q ss_pred             HHhcCCCccEEEEcCC-----c-HHHHHHHHHHhhcCCcEEEEecc
Q 020435          204 IDMTDGGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       204 ~~~~~~g~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       ....+.+|+|+..-.     . ...+..+.++|+|+ |+++....
T Consensus       130 -~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg-G~l~~~~~  173 (282)
T d2o57a1         130 -PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  173 (282)
T ss_dssp             -SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -cccccccchhhccchhhhccCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence             111237999975322     1 34578999999998 99988754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.71  E-value=0.0037  Score=51.51  Aligned_cols=76  Identities=18%  Similarity=0.184  Sum_probs=51.4

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEE-E--cCCCCCCccHHHHHHHhcC--CCc
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF-V--NSKNCGDKSVSQIIIDMTD--GGA  211 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~v-i--~~~~~~~~~~~~~i~~~~~--~g~  211 (326)
                      .+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.+.. +  |..+  .++..+.+.+...  +++
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   79 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD--RDQVFAAVEQARKTLGGF   79 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHTTCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHhCCc
Confidence            4588887 8999999999989999 999999999887654    34454322 2  2222  2223333333322  389


Q ss_pred             cEEEEcCCc
Q 020435          212 DYCFECVGL  220 (326)
Q Consensus       212 d~v~d~~g~  220 (326)
                      |++++++|.
T Consensus        80 DilVnnAG~   88 (255)
T d1gega_          80 DVIVNNAGV   88 (255)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEecccc
Confidence            999998875

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.69  E-value=0.0085  Score=48.87  Aligned_cols=99  Identities=19%  Similarity=0.262  Sum_probs=62.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEc-CChhHHHHH----HhcCCcE-EE--cCCCCCCccHHHHHHHhcC--C
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~-~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      ..|||+|+ +++|++.++.+...|+ +|+.++ ++++..+.+    ++.|.+. .+  |..+  .++..+.+.+...  +
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g   78 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK--EADVEAMMKTAIDAWG   78 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS--HHHHHHHHHHHHHHSS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHHHHHHcC
Confidence            46788887 8999999999999999 888764 565555443    3455432 22  2222  1223333333322  3


Q ss_pred             CccEEEEcCCcH-------------------------HHHHHHHHHh--hcCCcEEEEecc
Q 020435          210 GADYCFECVGLA-------------------------SLVQEAYACC--RKGWGKTIVLGV  243 (326)
Q Consensus       210 g~d~v~d~~g~~-------------------------~~~~~~~~~l--~~~~G~~v~~g~  243 (326)
                      ++|++++++|..                         ...+.++..|  +++ |++|.++.
T Consensus        79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS  138 (244)
T d1edoa_          79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIAS  138 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECC
T ss_pred             CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC-cEEEEEcC
Confidence            899999988851                         1344555555  455 99999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.66  E-value=0.0067  Score=44.38  Aligned_cols=74  Identities=15%  Similarity=0.363  Sum_probs=54.3

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      +++|.|.|.+|..+++.+...|. .|++++.++++.+.+++.+...++ .+. .+.++   +.+..-..+|.++-+.++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~-gd~-~~~~~---l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVI-ANA-TEENE---LLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEE-CCT-TCTTH---HHHHTGGGCSEEEECCCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCccee-eec-ccchh---hhccCCccccEEEEEcCch
Confidence            57888999999999999999998 999999999999999888864443 222 12333   2232112688888777654

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.66  E-value=0.00042  Score=56.86  Aligned_cols=75  Identities=20%  Similarity=0.193  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC--CCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~--~g~d~v~  215 (326)
                      .|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+..    ...|..+  .++..+.+.+...  +++|+++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~----~~~Dv~~--~~~v~~~~~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLFG----VEVDVTD--SDAVDRAFTAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSEE----EECCTTC--HHHHHHHHHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCceE----EEEecCC--HHHHHHHHHHHHHhcCCceEEE
Confidence            5789999987 8999999999999999 99999998766543322    1223222  1233333333322  2899999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      +++|.
T Consensus        79 nnAG~   83 (237)
T d1uzma1          79 SNAGL   83 (237)
T ss_dssp             EECSC
T ss_pred             eeecc
Confidence            98885

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.62  E-value=0.015  Score=44.27  Aligned_cols=91  Identities=21%  Similarity=0.279  Sum_probs=65.5

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHhcCC-cEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      +|+|+|.|.+|..++.-++..|. .+|++.+++++..+.+++.+. +......+   .        ......|+|+-|+.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~---~--------~~~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA---K--------VEDFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG---G--------GGGTCCSEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh---h--------hhccccccccccCC
Confidence            69999999999999988888774 289999999999999999884 44443322   1        11126899998888


Q ss_pred             cHH---HHHHHHHHhhcCCcEEEEeccC
Q 020435          220 LAS---LVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       220 ~~~---~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ...   .+......+.++ ..++.++..
T Consensus        72 ~~~~~~vl~~l~~~~~~~-~ii~d~~s~   98 (171)
T d2g5ca2          72 VRTFREIAKKLSYILSED-ATVTDQGSV   98 (171)
T ss_dssp             HHHHHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred             chhhhhhhhhhhcccccc-ccccccccc
Confidence            654   244555667776 667666543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0017  Score=44.63  Aligned_cols=71  Identities=25%  Similarity=0.274  Sum_probs=47.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh--HHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~--~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      ++.+|+|+|.|.+|+.+++++...|+ +|++.+....  ..+.++. +....+...+   ..   .+.     ++|.++-
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~---~~---~~~-----~~d~vi~   70 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPGLDKLPE-AVERHTGSLN---DE---WLM-----AADLIVA   70 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSCTTGGGSCT-TSCEEESBCC---HH---HHH-----HCSEEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCchhHHHHhh-ccceeecccc---hh---hhc-----cCCEEEE
Confidence            47899999999999999999999999 9999996443  2222222 2222332222   11   121     4788887


Q ss_pred             cCCcHH
Q 020435          217 CVGLAS  222 (326)
Q Consensus       217 ~~g~~~  222 (326)
                      +.|-+.
T Consensus        71 SPGi~~   76 (93)
T d2jfga1          71 SPGIAL   76 (93)
T ss_dssp             CTTSCT
T ss_pred             CCCCCC
Confidence            777655

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0011  Score=53.90  Aligned_cols=97  Identities=13%  Similarity=0.145  Sum_probs=64.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC---cEEEcCCCCCCccHHHHHHHhcCCCccEE
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV---TEFVNSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~---~~vi~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      .+|.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++...   ..+... .   .+.......+..+.+|.+
T Consensus        52 ~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~fD~i  125 (229)
T d1zx0a1          52 SKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPL-K---GLWEDVAPTLPDGHFDGI  125 (229)
T ss_dssp             TTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEE-E---SCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhcccccccc-c---ccccccccccccccccce
Confidence            5788999999876 6777888887666 89999999999888875321   111111 1   122322333334489998


Q ss_pred             E-EcCCc----------HHHHHHHHHHhhcCCcEEEEe
Q 020435          215 F-ECVGL----------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       215 ~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      + |....          ...+..+.+.|+|+ |.++..
T Consensus       126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG-G~~~~~  162 (229)
T d1zx0a1         126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYC  162 (229)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred             eecccccccccccccCHHHHHHHHHHHcCCC-cEEEEE
Confidence            5 65443          12466788999998 998764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.56  E-value=0.0046  Score=49.65  Aligned_cols=101  Identities=19%  Similarity=0.303  Sum_probs=68.8

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcE--EEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~  204 (326)
                      +.+.++++++++||-+|+|. |..+..+++. |. +|++++.+++..+.+++    .+.+.  ++..+.   .++     
T Consensus         7 ll~~~~l~~~~rVLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~---~~l-----   75 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGG-GHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----   75 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTT-CHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----
T ss_pred             HHHhcCCCCcCEEEEecccC-cHHHHHHHHh-CC-EEEEEECCHHHHhhhhhccccccccccccccccc---ccc-----
Confidence            56788999999999999873 6666666654 66 89999999987776643    34332  232222   111     


Q ss_pred             HhcCCCccEEEEcCC-----c-HHHHHHHHHHhhcCCcEEEEecc
Q 020435          205 DMTDGGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ....+.+|+|+....     . ..++..+.++|+|+ |.++....
T Consensus        76 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~i~~~  119 (231)
T d1vl5a_          76 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVDN  119 (231)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccccccccccccccccCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence            112237999985432     2 34578999999998 99988654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.55  E-value=0.0029  Score=49.43  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC-cE--EEcCCCCCCccHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TE--FVNSKNCGDKSVSQII  203 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~-~~--vi~~~~~~~~~~~~~i  203 (326)
                      +....+++++++||=+|+|. |..++.+|+. +. +|++++.+++..+.+++    .|. +.  ++.      .+..+..
T Consensus        25 il~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~------gda~~~~   95 (186)
T d1l3ia_          25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME------GDAPEAL   95 (186)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE------SCHHHHH
T ss_pred             HHHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEE------Cchhhcc
Confidence            44567889999999998754 4445556654 44 89999999998877654    553 22  232      2222222


Q ss_pred             HHhcC-CCccEEEEcCCc---HHHHHHHHHHhhcCCcEEEEec
Q 020435          204 IDMTD-GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       204 ~~~~~-~g~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                         .. +.+|.|+.....   ...++.+.+.|+++ |+++...
T Consensus        96 ---~~~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  134 (186)
T d1l3ia_          96 ---CKIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA  134 (186)
T ss_dssp             ---TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             ---cccCCcCEEEEeCccccchHHHHHHHHHhCcC-CEEEEEe
Confidence               22 389999854432   34477888899998 9987654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.49  E-value=0.0088  Score=48.24  Aligned_cols=103  Identities=16%  Similarity=0.195  Sum_probs=68.1

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHh
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      .+...+++|++||=.|+|+ |..+..+++..|. ++|++++.+++..+.+++    .+....+..+.   ... +... .
T Consensus        66 l~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~---~~~-~~~~-~  139 (227)
T d1g8aa_          66 LKNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA---TKP-EEYR-A  139 (227)
T ss_dssp             CCCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT---TCG-GGGT-T
T ss_pred             ccccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC---CCc-cccc-c
Confidence            3567899999999999876 8888889998863 489999999998877654    23222222222   111 1111 1


Q ss_pred             cCCCccEEEEcCCc----HHHHHHHHHHhhcCCcEEEEe
Q 020435          207 TDGGADYCFECVGL----ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       207 ~~~g~d~v~d~~g~----~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ....+|+++.-...    ...+..+.+.|+++ |.++..
T Consensus       140 ~~~~vD~i~~d~~~~~~~~~~l~~~~~~Lkpg-G~lvi~  177 (227)
T d1g8aa_         140 LVPKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA  177 (227)
T ss_dssp             TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             cccceEEEEEEccccchHHHHHHHHHHhcccC-CeEEEE
Confidence            11278888754332    22477888899998 988765

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.47  E-value=0.02  Score=43.21  Aligned_cols=88  Identities=17%  Similarity=0.147  Sum_probs=64.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      +|-|+|.|.+|...++-+...|. +|++.++++++.+.+++.+.. +.       .+..+.++     ..|+||-|+.++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~-~~-------~~~~e~~~-----~~d~ii~~v~~~   67 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAE-TA-------STAKAIAE-----QCDVIITMLPNS   67 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC-------SSHHHHHH-----HCSEEEECCSSH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhh-hc-------ccHHHHHh-----CCCeEEEEcCCH
Confidence            68899999999999988888898 999999999999998887763 22       22333333     389999999876


Q ss_pred             HHHHHH-------HHHhhcCCcEEEEeccC
Q 020435          222 SLVQEA-------YACCRKGWGKTIVLGVD  244 (326)
Q Consensus       222 ~~~~~~-------~~~l~~~~G~~v~~g~~  244 (326)
                      ......       ...+.++ ..++.++..
T Consensus        68 ~~v~~v~~~~~~~~~~~~~g-~iiid~sT~   96 (161)
T d1vpda2          68 PHVKEVALGENGIIEGAKPG-TVLIDMSSI   96 (161)
T ss_dssp             HHHHHHHHSTTCHHHHCCTT-CEEEECSCC
T ss_pred             HHHHHHHhCCcchhhccCCC-CEEEECCCC
Confidence            645543       3455665 667766553

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.44  E-value=0.0036  Score=51.91  Aligned_cols=81  Identities=14%  Similarity=0.167  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH---h-cCCcEEEcCCCCCCccHHHHHHHhcC--C
Q 020435          139 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK---R-FGVTEFVNSKNCGDKSVSQIIIDMTD--G  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g--~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~---~-~g~~~vi~~~~~~~~~~~~~i~~~~~--~  209 (326)
                      +|+++||+|+ |  +||.++++.+...|+ +|+.++++++..+.++   + .+...+...+-..+.+..+.+.+...  +
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            5899999985 5  699999999999999 9999999875444433   2 22222222222112233333333222  3


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ++|+++.+.+.
T Consensus        83 ~id~lV~nag~   93 (274)
T d2pd4a1          83 SLDFIVHSVAF   93 (274)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCeEEeeccc
Confidence            89999988874

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.41  E-value=0.019  Score=46.55  Aligned_cols=101  Identities=16%  Similarity=0.200  Sum_probs=63.5

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCC------EEEEEcCChhHHHHH----HhcCCcE-EE--cCCCCCCccHHHHHHHhc
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGAT------RIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~------~V~~~~~~~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~~i~~~~  207 (326)
                      .|||+|+ +++|.++++.+...|++      .|+..++++++.+.+    ++.|... .+  |..+  .++..+.+.+..
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~   80 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD--MADVRRLTTHIV   80 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHH
Confidence            4788887 89999999988888882      288999998887654    3345332 22  3222  122222233322


Q ss_pred             C--CCccEEEEcCCcH-------------------------HHHHHHHHHhh--cCCcEEEEeccCC
Q 020435          208 D--GGADYCFECVGLA-------------------------SLVQEAYACCR--KGWGKTIVLGVDQ  245 (326)
Q Consensus       208 ~--~g~d~v~d~~g~~-------------------------~~~~~~~~~l~--~~~G~~v~~g~~~  245 (326)
                      .  +++|++++++|..                         ...+.++..++  ++ |+++.++...
T Consensus        81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Ii~isS~~  146 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS-GHIFFITSVA  146 (240)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGG
T ss_pred             HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCC-CceEEEechh
Confidence            2  3899999988851                         12445555553  34 8999987543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.36  E-value=0.013  Score=46.23  Aligned_cols=81  Identities=23%  Similarity=0.272  Sum_probs=59.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|+|.|.|.+|..+++++...|+ +|++.+.+.++.+....+|.+. +..++            +....+|+.+=|.
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~-~~~~~------------~~~~~~DI~iPcA   91 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA-VALED------------VLSTPCDVFAPCA   91 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-CCGGG------------GGGCCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhcccc-cCccc------------cccccceeeeccc
Confidence            57899999999999999999999999 9999999999988888888753 22221            1222788888666


Q ss_pred             CcHHHHHHHHHHhhc
Q 020435          219 GLASLVQEAYACCRK  233 (326)
Q Consensus       219 g~~~~~~~~~~~l~~  233 (326)
                      .+..+-......++-
T Consensus        92 ~~~~I~~~~a~~i~a  106 (201)
T d1c1da1          92 MGGVITTEVARTLDC  106 (201)
T ss_dssp             CSCCBCHHHHHHCCC
T ss_pred             ccccccHHHHhhhhh
Confidence            654434445555543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.015  Score=50.92  Aligned_cols=106  Identities=20%  Similarity=0.264  Sum_probs=70.0

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc---------------CCcEEEcCCCCC
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF---------------GVTEFVNSKNCG  195 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~---------------g~~~vi~~~~~~  195 (326)
                      +++..++++++++|=+|+|. |..+.++|+..|+.+|++++.++...+.++..               +.........+.
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~  286 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV  286 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred             HHHHhCCCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence            67889999999999999877 88999999999876899999998876665421               122221122211


Q ss_pred             CccHHHHHHHhcCCCccEEEE-cC-Cc---HHHHHHHHHHhhcCCcEEEEec
Q 020435          196 DKSVSQIIIDMTDGGADYCFE-CV-GL---ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       196 ~~~~~~~i~~~~~~g~d~v~d-~~-g~---~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ..+..+....    .+|+++- +. ..   ...+..+.+.|++| |++|...
T Consensus       287 ~~~~~d~~~~----~adVV~inn~~f~~~l~~~L~ei~r~LKPG-GrIVs~~  333 (406)
T d1u2za_         287 DNNRVAELIP----QCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLK  333 (406)
T ss_dssp             TCHHHHHHGG----GCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             hccccccccc----cceEEEEecccCchHHHHHHHHHHHhcCCC-cEEEEec
Confidence            1222222111    4778873 22 22   23466888899998 9998864

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.35  E-value=0.0061  Score=49.32  Aligned_cols=102  Identities=12%  Similarity=0.119  Sum_probs=66.2

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc----CCcEEEcCCCCCCccHHHHHHHhc
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      .+...+++|++||=.|+|. |..+..+++......|++++.+++..+.++..    +....+..+.   ....    ...
T Consensus        67 l~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~---~~~~----~~~  138 (230)
T d1g8sa_          67 LKVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQ----EYA  138 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGG----GGT
T ss_pred             HHhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee---ccCc----ccc
Confidence            3567799999999999876 77777888875445999999999888877653    2222333222   1110    111


Q ss_pred             CC--CccEEEEcCCc----HHHHHHHHHHhhcCCcEEEEec
Q 020435          208 DG--GADYCFECVGL----ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ~~--g~d~v~d~~g~----~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ..  .+|+++.....    ...+..+.+.|+++ |.+++.-
T Consensus       139 ~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg-G~~~i~~  178 (230)
T d1g8sa_         139 NIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIAI  178 (230)
T ss_dssp             TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cccceeEEeeccccchHHHHHHHHHHHHhcccC-ceEEEEe
Confidence            12  56666654432    23466778899998 9887653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.012  Score=44.58  Aligned_cols=97  Identities=15%  Similarity=0.238  Sum_probs=68.0

Q ss_pred             hhhhhcc-cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC
Q 020435          130 AAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       130 ~l~~~~~-~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      ++.+..+ .-.|++++|.|-|-+|.-+++.++.+|+ +|++++.++-+.-++.--|.. +.        .+.+.+     
T Consensus        13 ~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~~-v~--------~~~~a~-----   77 (163)
T d1li4a1          13 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGYE-VT--------TMDEAC-----   77 (163)
T ss_dssp             HHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC--------CHHHHT-----
T ss_pred             HHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCceE-ee--------ehhhhh-----
Confidence            3444444 4479999999999999999999999999 999999988665444434432 21        222222     


Q ss_pred             CCccEEEEcCCcHH-HHHHHHHHhhcCCcEEEEec
Q 020435          209 GGADYCFECVGLAS-LVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       209 ~g~d~v~d~~g~~~-~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ...|+++-+.|..+ +-...++.|+++ ..+...|
T Consensus        78 ~~adivvtaTGn~~vI~~eh~~~MKdg-aIL~N~G  111 (163)
T d1li4a1          78 QEGNIFVTTTGCIDIILGRHFEQMKDD-AIVCNIG  111 (163)
T ss_dssp             TTCSEEEECSSCSCSBCHHHHTTCCTT-EEEEECS
T ss_pred             hhccEEEecCCCccchhHHHHHhccCC-eEEEEec
Confidence            15899999999854 345778889986 4444444

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.15  E-value=0.018  Score=46.61  Aligned_cols=96  Identities=18%  Similarity=0.282  Sum_probs=65.8

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc----CCc-EEEcCCCCCCccHHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-EFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~~~~i~~  205 (326)
                      ++......+..+||-+|+|. |..+..+++ .|+ +|++++.+++..+.+++.    +.. .++..+-          .+
T Consensus        33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~----------~~   99 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV----------LE   99 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG----------GG
T ss_pred             HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchheehhh----------hh
Confidence            44555667788999999876 777777776 577 899999999988877652    321 2333222          12


Q ss_pred             hcCC-CccEEEEcCCc---------HHHHHHHHHHhhcCCcEEEE
Q 020435          206 MTDG-GADYCFECVGL---------ASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       206 ~~~~-g~d~v~d~~g~---------~~~~~~~~~~l~~~~G~~v~  240 (326)
                      +..+ .+|+|+...+.         ...++.+.++|+++ |.++.
T Consensus       100 l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg-G~lii  143 (251)
T d1wzna1         100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG-GVFIT  143 (251)
T ss_dssp             CCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             cccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC-cEEEE
Confidence            2223 89999875432         13577889999998 98876

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.15  E-value=0.018  Score=45.72  Aligned_cols=103  Identities=14%  Similarity=0.075  Sum_probs=66.5

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHhcC
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      ....+++|++||=.|+|+ |..+..+++..+..+|++++.+++..+.+++    .+-...+..+.   .+.. .. ....
T Consensus        50 ~~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~---~~~~-~~-~~~~  123 (209)
T d1nt2a_          50 HRLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPW-KY-SGIV  123 (209)
T ss_dssp             CCCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGG-GT-TTTC
T ss_pred             ccCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec---cCcc-cc-cccc
Confidence            346789999999999876 6677788888775589999999988876643    33222332222   1110 00 0011


Q ss_pred             CCccEEEEcCCc----HHHHHHHHHHhhcCCcEEEEec
Q 020435          209 GGADYCFECVGL----ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       209 ~g~d~v~d~~g~----~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ..+|+++.....    ...+..+.+.|+++ |.++..-
T Consensus       124 ~~vd~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  160 (209)
T d1nt2a_         124 EKVDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIMV  160 (209)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ceEEEEEecccChhhHHHHHHHHHHHhccC-CeEEEEE
Confidence            167777754322    23467788999998 9987763

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.14  E-value=0.009  Score=50.05  Aligned_cols=98  Identities=17%  Similarity=0.193  Sum_probs=67.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC---------C-cEEEcCCCCCCccHHHHHHHhc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG---------V-TEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g---------~-~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ...++|||+|.|. |..+-.++++.+..+|.+++-+++=.+.++++-         . -.++.      .+-.+.+++..
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~------~Da~~~l~~~~  151 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI------GDGVAFLKNAA  151 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE------SCHHHHHHTSC
T ss_pred             CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE------ccHHHHHhhcc
Confidence            4568999998655 455557777777668999999998888776632         1 12332      23344555544


Q ss_pred             CCCccEEE-EcCC---------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          208 DGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       208 ~~g~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+.+|+|| |+..         +...++.+.+.|+++ |.++.-..
T Consensus       152 ~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~~  196 (290)
T d1xj5a_         152 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQAE  196 (290)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             ccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC-cEEEEecC
Confidence            44899887 6544         245788999999998 99988654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.01  Score=48.51  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHHhcCC--
Q 020435          139 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMTDG--  209 (326)
Q Consensus       139 ~~~~vlI~Ga-g--~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~--  209 (326)
                      +|+++||+|+ |  ++|.+++..+...|+ +|+.++++++..+.+.    ..+....+..+.....+..+.+.+....  
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            6899999986 5  689999999999999 8999999876555443    2443333332221112233333333322  


Q ss_pred             CccEEEEcCCc
Q 020435          210 GADYCFECVGL  220 (326)
Q Consensus       210 g~d~v~d~~g~  220 (326)
                      ..|+.+++++.
T Consensus        83 ~~d~~v~~a~~   93 (258)
T d1qsga_          83 KFDGFVHSIGF   93 (258)
T ss_dssp             SEEEEEECCCC
T ss_pred             ccceEEEeecc
Confidence            88999987654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.09  E-value=0.015  Score=44.50  Aligned_cols=92  Identities=13%  Similarity=0.048  Sum_probs=58.5

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-hcC---CcEEEcCCCCCCccHHHHHHHhcCCCcc
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG---VTEFVNSKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~-~~g---~~~vi~~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      ..++.+|+|.|+|+.+.+++..+...+. +++.+.|+.++.+.+. .++   .-..+..++            .....+|
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~-~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~------------~~~~~~d   81 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKELAERFQPYGNIQAVSMDS------------IPLQTYD   81 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG------------CCCSCCS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCc-eeeeccchHHHHHHHHHHHhhccccchhhhcc------------ccccccc
Confidence            3478899999999999999888776665 9999999998877653 333   212222211            1112799


Q ss_pred             EEEEcCCcHHH---HHHHHHHhhcCCcEEEEec
Q 020435          213 YCFECVGLASL---VQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       213 ~v~d~~g~~~~---~~~~~~~l~~~~G~~v~~g  242 (326)
                      ++++|.+....   .......++++ ..++..-
T Consensus        82 iiIN~tp~g~~~~~~~~~~~~~~~~-~~~~D~v  113 (171)
T d1p77a1          82 LVINATSAGLSGGTASVDAEILKLG-SAFYDMQ  113 (171)
T ss_dssp             EEEECCCC-------CCCHHHHHHC-SCEEESC
T ss_pred             eeeecccccccccccchhhhhhccc-ceeeeee
Confidence            99999885431   11223456666 6666553

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.03  E-value=0.0028  Score=53.23  Aligned_cols=101  Identities=13%  Similarity=0.080  Sum_probs=64.7

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc----CCc-----EEEcCCCCCCccHHHH
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-----EFVNSKNCGDKSVSQI  202 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~----g~~-----~vi~~~~~~~~~~~~~  202 (326)
                      .+..+.+++.+||-+|+|. |..+..|++. |+ +|++++.|++.++.+++.    +..     ..+..     .++...
T Consensus        49 ~~~l~~~~~~~vLD~GcG~-G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~-----~~~~~~  120 (292)
T d1xvaa_          49 LGLLRQHGCHRVLDVACGT-GVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE-----ANWLTL  120 (292)
T ss_dssp             HHHHHHTTCCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEE-----CCGGGH
T ss_pred             HHHhhhcCCCEEEEecCCC-cHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeee-----cccccc
Confidence            3445556778999999876 7777778775 88 999999999988776541    111     11111     112111


Q ss_pred             HHHhcCC-CccEEEEcCCc--------------HHHHHHHHHHhhcCCcEEEEe
Q 020435          203 IIDMTDG-GADYCFECVGL--------------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       203 i~~~~~~-g~d~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      -...... .+|.|+.....              ..+++.+.+.|+|+ |.++.-
T Consensus       121 ~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~  173 (292)
T d1xvaa_         121 DKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG-GLLVID  173 (292)
T ss_dssp             HHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred             ccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC-cEEEEe
Confidence            1223333 89999864321              12588999999998 998873

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.034  Score=47.28  Aligned_cols=104  Identities=14%  Similarity=0.138  Sum_probs=70.0

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-----------cC----CcEEEcCCCCC
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----------FG----VTEFVNSKNCG  195 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-----------~g----~~~vi~~~~~~  195 (326)
                      +.+..+++++++||-.|+|. |..+.++|+..++.++++++.+++..+.+++           .|    .-.++..+- .
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~-~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF-L  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT-T
T ss_pred             HHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc-c
Confidence            66788899999999999876 8888899999887789999999987666532           12    112333222 2


Q ss_pred             CccHHHHHHHhcCCCccEEEE-cC-CcH---HHHHHHHHHhhcCCcEEEEec
Q 020435          196 DKSVSQIIIDMTDGGADYCFE-CV-GLA---SLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       196 ~~~~~~~i~~~~~~g~d~v~d-~~-g~~---~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +.++.+.+.     .+|+|+- .. -.+   ..+....+.|++| |++|..-
T Consensus       221 ~~~~~~~~~-----~advi~~~~~~f~~~~~~~l~e~~r~LKpG-g~iv~~~  266 (328)
T d1nw3a_         221 SEEWRERIA-----NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSK  266 (328)
T ss_dssp             SHHHHHHHH-----HCSEEEECCTTTCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             ccccccccC-----cceEEEEcceecchHHHHHHHHHHHhCCCC-cEEEEec
Confidence            233433332     2678873 22 222   2366778889998 9998764

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.01  E-value=0.0099  Score=48.47  Aligned_cols=77  Identities=14%  Similarity=0.185  Sum_probs=49.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHH---HcCCCEEEEEcCChhHHHHHHh----cCCcEEE--cCCCCCCccHHH---HHHHhc
Q 020435          141 STVVIFGL-GSIGLAVAEGAR---LCGATRIIGVDVISEKFEIGKR----FGVTEFV--NSKNCGDKSVSQ---IIIDMT  207 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~---~~g~~~V~~~~~~~~~~~~~~~----~g~~~vi--~~~~~~~~~~~~---~i~~~~  207 (326)
                      ++|||+|+ ++||.++++.+.   ..|+ +|+.+++++++.+.+++    .+--+++  |..+  .++..+   .+.+..
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   79 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIEGVT   79 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc--HHHHHHHHhhhHHHh
Confidence            47999997 899999886554   3577 99999999887665543    2222222  3222  233333   333333


Q ss_pred             CC-CccEEEEcCCc
Q 020435          208 DG-GADYCFECVGL  220 (326)
Q Consensus       208 ~~-g~d~v~d~~g~  220 (326)
                      .. ++|++++++|.
T Consensus        80 ~~~~iDiLvnNAg~   93 (248)
T d1snya_          80 KDQGLNVLFNNAGI   93 (248)
T ss_dssp             GGGCCSEEEECCCC
T ss_pred             hcCCcceEEeeccc
Confidence            33 89999998774

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.014  Score=47.53  Aligned_cols=46  Identities=33%  Similarity=0.325  Sum_probs=39.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHhcCC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGV  185 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-~~~~g~  185 (326)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+. +++++.
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~   51 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN   51 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            5889999987 8999999999999999 99999999887765 455654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.00  E-value=0.029  Score=41.91  Aligned_cols=82  Identities=23%  Similarity=0.222  Sum_probs=56.1

Q ss_pred             EEEEEccCHHHHHHHH-HHHHcCCCEEEEEcCChhHHHHHHh-cCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          142 TVVIFGLGSIGLAVAE-GARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~-la~~~g~~~V~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      +|.++|+|.+|.+.++ |++.-+. ++++.++++++.+.+.+ +|.. +.+..+    ..         ...|+||=|+-
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~-~i~v~~r~~~~~~~l~~~~~~~-~~~~~~----~v---------~~~Div~lavk   66 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRGAEKRERLEKELGVE-TSATLP----EL---------HSDDVLILAVK   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSSHHHHHHHHHHTCCE-EESSCC----CC---------CTTSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCC-cEEEEeCChhHHHHhhhhcccc-cccccc----cc---------cccceEEEecC
Confidence            6889999999998877 4454445 99999999999887655 6653 333222    11         15789998776


Q ss_pred             cHHHHHHHHHHhhcCCcEEEE
Q 020435          220 LASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       220 ~~~~~~~~~~~l~~~~G~~v~  240 (326)
                      -.. +....+-+.+. ++.+.
T Consensus        67 P~~-~~~v~~~l~~~-~~~vi   85 (152)
T d1yqga2          67 PQD-MEAACKNIRTN-GALVL   85 (152)
T ss_dssp             HHH-HHHHHTTCCCT-TCEEE
T ss_pred             HHH-HHHhHHHHhhc-ccEEe
Confidence            433 66666666665 56543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.00  E-value=0.0057  Score=52.25  Aligned_cols=100  Identities=19%  Similarity=0.203  Sum_probs=63.6

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHHhc-
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMT-  207 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~-  207 (326)
                      .+++|++||=.++|. |..++.+|+. |+.+|++++.+++..+.+++    .|..   +++.      .+..+.+..+. 
T Consensus       142 ~~~~g~~VLDl~~g~-G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~------~d~~~~~~~~~~  213 (324)
T d2as0a2         142 WVQPGDRVLDVFTYT-GGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV------GSAFEEMEKLQK  213 (324)
T ss_dssp             GCCTTCEEEETTCTT-THHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE------SCHHHHHHHHHH
T ss_pred             hcCCCCeeecccCcc-cchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee------chhhhhhHHHHh
Confidence            367899999886643 3333444443 66689999999999888754    4432   2332      23344443332 


Q ss_pred             -CCCccEEE-EcCCc--------------HHHHHHHHHHhhcCCcEEEEeccC
Q 020435          208 -DGGADYCF-ECVGL--------------ASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       208 -~~g~d~v~-d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       ++.||+|+ |....              ...+..+.++|+++ |.++.+..+
T Consensus       214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s~s  265 (324)
T d2as0a2         214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSCS  265 (324)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEECC
T ss_pred             ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEeCC
Confidence             23899998 44332              12466778899998 999888653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.99  E-value=0.017  Score=45.30  Aligned_cols=87  Identities=20%  Similarity=0.164  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..++++++.+|+ +|++.++.........  +..    .     .++.+.+.+     .|+++-+.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~~~~~~--~~~----~-----~~l~~~l~~-----sDii~~~~  104 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPELEKK--GYY----V-----DSLDDLYKQ-----ADVISLHV  104 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHT--TCB----C-----SCHHHHHHH-----CSEEEECS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCcccccccccc--eee----e-----ccccccccc-----cccccccC
Confidence            47899999999999999999999999 9999987655433221  211    1     234444443     78887665


Q ss_pred             Cc-HH----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 GL-AS----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~-~~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .. +.    +-...++.++++ ..+|.++.
T Consensus       105 plt~~T~~li~~~~l~~mk~~-a~lIN~sR  133 (197)
T d1j4aa1         105 PDVPANVHMINDESIAKMKQD-VVIVNVSR  133 (197)
T ss_dssp             CCCGGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred             CccccccccccHHHHhhhCCc-cEEEecCc
Confidence            42 21    124667788887 77777754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.98  E-value=0.012  Score=46.79  Aligned_cols=73  Identities=15%  Similarity=0.042  Sum_probs=47.7

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCC-EEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~-~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+|||+|+ |.+|..+++.+...|.. .|+.+.+++++.+.+.. +.+ ++..+-   .+ .+.+.+... ++|.|+.++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~-~~~~d~---~~-~~~~~~~~~-~~d~vi~~a   76 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EAD-VFIGDI---TD-ADSINPAFQ-GIDALVILT   76 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTT-EEECCT---TS-HHHHHHHHT-TCSEEEECC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcE-EEEeee---cc-ccccccccc-cceeeEEEE
Confidence            59999997 99999999999888852 57778888877665532 333 222222   11 222333322 689999887


Q ss_pred             Cc
Q 020435          219 GL  220 (326)
Q Consensus       219 g~  220 (326)
                      +.
T Consensus        77 ~~   78 (252)
T d2q46a1          77 SA   78 (252)
T ss_dssp             CC
T ss_pred             ee
Confidence            63

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.84  E-value=0.026  Score=44.63  Aligned_cols=93  Identities=17%  Similarity=0.254  Sum_probs=61.6

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC-cEEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      +++.++||-+|+|. |..+..+++. |. +|++++.|++..+.+++    .+. ...+..+.   .++     ....+.+
T Consensus        35 l~~~~~ILDiGcG~-G~~~~~la~~-~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~---~~l-----~~~~~~f  103 (226)
T d1ve3a1          35 MKKRGKVLDLACGV-GGFSFLLEDY-GF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKL-----SFEDKTF  103 (226)
T ss_dssp             CCSCCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSC-----CSCTTCE
T ss_pred             cCCCCEEEEECCCc-chhhhhHhhh-hc-ccccccccccchhhhhhhhcccccccccccccc---ccc-----cccCcCc
Confidence            56789999999876 7777777764 77 89999999998877754    332 12222222   111     1112379


Q ss_pred             cEEEEcCCc--------HHHHHHHHHHhhcCCcEEEEe
Q 020435          212 DYCFECVGL--------ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       212 d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      |+|+....-        ...+..+.+.|+|+ |++++.
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~lii~  140 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPS-GKFIMY  140 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcC-cEEEEE
Confidence            999753321        12477889999998 998765

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.018  Score=46.21  Aligned_cols=106  Identities=16%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC-c------------EEEcCCCCCCccH
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-T------------EFVNSKNCGDKSV  199 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~-~------------~vi~~~~~~~~~~  199 (326)
                      +...+.++.+||..|+|. |..+..||+ .|+ +|++++.|++..+.+++... .            ....... ..-++
T Consensus        39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  114 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSS-GNISL  114 (229)
T ss_dssp             HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT-SSEEE
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecC-CcEEE
Confidence            445677899999999877 777777776 598 99999999999988764221 1            1100000 00000


Q ss_pred             -HHHHHHh--c-CCCccEEEEcCCc--------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          200 -SQIIIDM--T-DGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       200 -~~~i~~~--~-~~g~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       ...+..+  . .+.+|+|+++..-        ...+..+.++|+++ |++++...
T Consensus       115 ~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg-G~~~l~~~  169 (229)
T d2bzga1         115 YCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK-FQYLLCVL  169 (229)
T ss_dssp             EESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             EEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc-ceEEEEEc
Confidence             0001111  1 2278999986532        23467889999998 99877654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0059  Score=46.29  Aligned_cols=89  Identities=10%  Similarity=0.132  Sum_probs=57.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc-----EEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-----EFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~-----~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      .+|+|+|+|++|.+....+...|. .|..+++++++.+.....+.+     ..+..+.      .+.+     +.+|++|
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~~D~ii   68 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTAND------PDFL-----ATSDLLL   68 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEESC------HHHH-----HTCSEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccccch------hhhh-----cccceEE
Confidence            379999999999999988888998 999999988755443332211     1111111      1222     1699999


Q ss_pred             EcCCcHHHHHHHHH----HhhcCCcEEEEecc
Q 020435          216 ECVGLASLVQEAYA----CCRKGWGKTIVLGV  243 (326)
Q Consensus       216 d~~g~~~~~~~~~~----~l~~~~G~~v~~g~  243 (326)
                      -++.... .....+    .+.++ ..++.+..
T Consensus        69 i~vka~~-~~~~~~~l~~~~~~~-~~Iv~~qN   98 (167)
T d1ks9a2          69 VTLKAWQ-VSDAVKSLASTLPVT-TPILLIHN   98 (167)
T ss_dssp             ECSCGGG-HHHHHHHHHTTSCTT-SCEEEECS
T ss_pred             Eeecccc-hHHHHHhhccccCcc-cEEeeccC
Confidence            9888865 444444    44444 55666543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.60  E-value=0.02  Score=46.92  Aligned_cols=81  Identities=16%  Similarity=0.210  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcc-C--HHHHHHHHHHHHcCCCEEEEEcCChhHH-HHH-HhcCCcE-E--EcCCCC-CCccHHHHHHHhcC
Q 020435          138 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKF-EIG-KRFGVTE-F--VNSKNC-GDKSVSQIIIDMTD  208 (326)
Q Consensus       138 ~~~~~vlI~Ga-g--~~G~~a~~la~~~g~~~V~~~~~~~~~~-~~~-~~~g~~~-v--i~~~~~-~~~~~~~~i~~~~~  208 (326)
                      =+|+++||+|+ |  ++|.++++-+...|+ +|+.+.++.++. +.+ +.++... .  .|..+. ...+..+.+.+..+
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~   82 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   82 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence            36889999985 4  599999999999999 999999887765 333 3455321 2  222220 00223344444443


Q ss_pred             C--CccEEEEcCC
Q 020435          209 G--GADYCFECVG  219 (326)
Q Consensus       209 ~--g~d~v~d~~g  219 (326)
                      .  ..|+++++++
T Consensus        83 ~~~~ld~~i~~ag   95 (268)
T d2h7ma1          83 AGNKLDGVVHSIG   95 (268)
T ss_dssp             TTCCEEEEEECCC
T ss_pred             cCCCcceeeeccc
Confidence            3  7999999887

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.54  E-value=0.028  Score=45.13  Aligned_cols=104  Identities=15%  Similarity=0.239  Sum_probs=69.0

Q ss_pred             hcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHh--
Q 020435          134 TANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM--  206 (326)
Q Consensus       134 ~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~--  206 (326)
                      ..+.....+||-+|.+. |..++.+|++++. .+|+.++.+++..+.+++    .|...-+....   .+..+.+.++  
T Consensus        54 L~~~~~~k~iLEiGT~~-GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~---g~a~~~L~~l~~  129 (227)
T d1susa1          54 LLKLINAKNTMEIGVYT-GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE---GPALPVLDEMIK  129 (227)
T ss_dssp             HHHHHTCCEEEEECCGG-GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHH
T ss_pred             HHHhcCCCcEEEecchh-hhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee---hHHHHHHHHHHh
Confidence            34556778999998654 7778888887642 399999999988777654    45432222222   3344444444  


Q ss_pred             ---cCCCccEEE-EcCCcH--HHHHHHHHHhhcCCcEEEEec
Q 020435          207 ---TDGGADYCF-ECVGLA--SLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       207 ---~~~g~d~v~-d~~g~~--~~~~~~~~~l~~~~G~~v~~g  242 (326)
                         ..+.+|.|| |+--..  ..++.+++.|+++ |.++.=.
T Consensus       130 ~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~g-Giii~DN  170 (227)
T d1susa1         130 DEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN  170 (227)
T ss_dssp             CGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEET
T ss_pred             ccccCCceeEEEeccchhhhHHHHHHHHhhcCCC-cEEEEcc
Confidence               233799998 655543  3478899999998 8776543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.50  E-value=0.063  Score=40.40  Aligned_cols=89  Identities=17%  Similarity=0.198  Sum_probs=62.2

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      .+|-++|.|.+|...+.-+...|. .|.+.++++++.+.+...+....        .+..+.+.     ..|+++-|+..
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~--------~~~~e~~~-----~~diii~~v~~   67 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGASAA--------RSARDAVQ-----GADVVISMLPA   67 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEEC--------SSHHHHHT-----SCSEEEECCSC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhcccc--------chhhhhcc-----ccCeeeecccc
Confidence            368899999999988887777898 99999999999998888775422        12222221     47888888887


Q ss_pred             HHHHHHH-------HHHhhcCCcEEEEeccC
Q 020435          221 ASLVQEA-------YACCRKGWGKTIVLGVD  244 (326)
Q Consensus       221 ~~~~~~~-------~~~l~~~~G~~v~~g~~  244 (326)
                      .......       ...+.++ -.++.++..
T Consensus        68 ~~~~~~v~~~~~~~~~~l~~g-~iiid~st~   97 (162)
T d3cuma2          68 SQHVEGLYLDDDGLLAHIAPG-TLVLECSTI   97 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHSCTT-CEEEECSCC
T ss_pred             hhhHHHHHhccccccccCCCC-CEEEECCCC
Confidence            6644433       3345565 566666543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.38  E-value=0.034  Score=45.99  Aligned_cols=98  Identities=13%  Similarity=0.109  Sum_probs=67.1

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC-----C-----cEEEcCCCCCCccHHHHHHHh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-----V-----TEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g-----~-----~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ....++|||+|+|. |..+..++++.+..+|.+++-+++=.+.++++-     +     -.++..+.      .+.+++ 
T Consensus        73 ~~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~------~~~l~~-  144 (274)
T d1iy9a_          73 HPNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG------FMHIAK-  144 (274)
T ss_dssp             SSSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS------HHHHHT-
T ss_pred             cCCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH------HHHHhh-
Confidence            34578999998765 555667777777669999999998877776531     1     12333322      334443 


Q ss_pred             cCCCccEEE-EcCC---------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          207 TDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       207 ~~~g~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ++..+|+|+ |...         +...++.+.+.|+++ |.++.-..
T Consensus       145 ~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-Gv~v~q~~  190 (274)
T d1iy9a_         145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQTD  190 (274)
T ss_dssp             CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEECC
T ss_pred             cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-ceEEEecC
Confidence            334899997 5433         356688999999998 99887643

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.35  E-value=0.12  Score=38.62  Aligned_cols=93  Identities=20%  Similarity=0.240  Sum_probs=56.5

Q ss_pred             CEEEEEccCHHHH-HHHHHHHHcCCCEEEEEc-CChh--HHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEE
Q 020435          141 STVVIFGLGSIGL-AVAEGARLCGATRIIGVD-VISE--KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF  215 (326)
Q Consensus       141 ~~vlI~Gag~~G~-~a~~la~~~g~~~V~~~~-~~~~--~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~  215 (326)
                      -+|.|+|+|.+|. .+.++++.....++++++ ++.+  ...+++++|.....       . ..+.+.+...- ++|+||
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~-------~-~~d~l~~~~~~~~iDiVf   76 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY-------A-GVEGLIKLPEFADIDFVF   76 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES-------S-HHHHHHHSGGGGGEEEEE
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc-------c-ceeeeeecccccccCEEE
Confidence            4789999999986 567888766443677765 3433  34567778864321       1 23334433322 799999


Q ss_pred             EcCCcHHHHH--HHHHHhhcCCcEEEEec
Q 020435          216 ECVGLASLVQ--EAYACCRKGWGKTIVLG  242 (326)
Q Consensus       216 d~~g~~~~~~--~~~~~l~~~~G~~v~~g  242 (326)
                      .+........  .....++.+ -.++...
T Consensus        77 ~ATpag~h~~~~~~~~aa~~G-~~VID~s  104 (157)
T d1nvmb1          77 DATSASAHVQNEALLRQAKPG-IRLIDLT  104 (157)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTT-CEEEECS
T ss_pred             EcCCchhHHHhHHHHHHHHcC-CEEEEcc
Confidence            9887644344  334456665 4555554

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.31  E-value=0.044  Score=40.88  Aligned_cols=85  Identities=13%  Similarity=0.098  Sum_probs=60.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      +|.++|+|.+|.+++.-....|. ++++..+++++.+.+ +++|....        .+..+.+.     ..|+||=|+-.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~--------~~~~~~~~-----~~dvIilavkp   67 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYA--------MSHQDLID-----QVDLVILGIKP   67 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBC--------SSHHHHHH-----TCSEEEECSCG
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeee--------chhhhhhh-----ccceeeeecch
Confidence            68899999999988876666677 899999999987775 55675322        12222222     58999988865


Q ss_pred             HHHHHHHHHHhhcCCcEEEEec
Q 020435          221 ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       221 ~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .. +...+..++++ ..++.+.
T Consensus        68 ~~-~~~vl~~l~~~-~~iis~~   87 (152)
T d2ahra2          68 QL-FETVLKPLHFK-QPIISMA   87 (152)
T ss_dssp             GG-HHHHHTTSCCC-SCEEECC
T ss_pred             Hh-HHHHhhhcccc-eeEeccc
Confidence            44 77777888886 6666553

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=95.24  E-value=0.037  Score=46.66  Aligned_cols=96  Identities=20%  Similarity=0.187  Sum_probs=64.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC-----------CcEEEcCCCCCCccHHHHHHHh
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-----------VTEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g-----------~~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ...++|||+|+|. |..+..+++..+..+|.+++.+++-.+.+++.-           --+++.      .+..+.+++ 
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~------~Da~~~l~~-  147 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI------DDARAYLER-  147 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE------SCHHHHHHH-
T ss_pred             CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE------chHHHHhhh-
Confidence            4578999998765 555666777765558999999998877776521           113332      234444544 


Q ss_pred             cCCCccEEE-EcC---C---------cHHHHHHHHHHhhcCCcEEEEec
Q 020435          207 TDGGADYCF-ECV---G---------LASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       207 ~~~g~d~v~-d~~---g---------~~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      +++.+|+|| |..   +         +...++.+.+.|+++ |.++.-.
T Consensus       148 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gvlv~~~  195 (312)
T d1uira_         148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQT  195 (312)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC-ceEEEec
Confidence            344899997 552   2         234678899999998 9988654

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.049  Score=45.74  Aligned_cols=98  Identities=18%  Similarity=0.294  Sum_probs=56.1

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH---HhcCC---cEEEcCCCCCCccHHHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG---KRFGV---TEFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~---~~~g~---~~vi~~~~~~~~~~~~~i~  204 (326)
                      +.+.....++++||-+|+| .|.+++.+|+ .|+.+|++++.++......   ++.+.   -.++..+.   .++     
T Consensus        27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~---~~l-----   96 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI---EEV-----   96 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT---TTS-----
T ss_pred             HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH---HHh-----
Confidence            3344566789999999987 3666665555 4766999999887643322   23332   12333222   111     


Q ss_pred             HhcCCCccEEEE-cCCc--------HHHHHHHHHHhhcCCcEEE
Q 020435          205 DMTDGGADYCFE-CVGL--------ASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       205 ~~~~~g~d~v~d-~~g~--------~~~~~~~~~~l~~~~G~~v  239 (326)
                      ....+.+|+|+. ..+.        +..+...-+.|+|+ |+++
T Consensus        97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~-G~ii  139 (311)
T d2fyta1          97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG-GSVY  139 (311)
T ss_dssp             CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE-EEEE
T ss_pred             cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCC-cEEe
Confidence            011128999984 2322        12233344679998 8876

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.20  E-value=0.044  Score=45.96  Aligned_cols=75  Identities=23%  Similarity=0.288  Sum_probs=46.9

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC--Ch---hHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV--IS---EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADY  213 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~--~~---~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~  213 (326)
                      .+|||+|+ |-+|..+++.+...|. +|++++.  ..   ++.+.+...+--.++..+- .+   .+.+.+...+ ++|+
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di-~~---~~~l~~~~~~~~~d~   75 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDI-RN---KNDVTRLITKYMPDS   75 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCT-TC---HHHHHHHHHHHCCSE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEccc-CC---HHHHHHHHHhcCCce
Confidence            37999987 9999999999888898 8999863  12   2233344443223333222 11   2233344334 7899


Q ss_pred             EEEcCCc
Q 020435          214 CFECVGL  220 (326)
Q Consensus       214 v~d~~g~  220 (326)
                      ||.++..
T Consensus        76 Vih~aa~   82 (338)
T d1orra_          76 CFHLAGQ   82 (338)
T ss_dssp             EEECCCC
T ss_pred             EEeeccc
Confidence            9998763

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.17  E-value=0.028  Score=43.83  Aligned_cols=92  Identities=17%  Similarity=0.217  Sum_probs=59.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcE--EEcCCCCCCccHHHHHHHhcCCCcc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      ++.+||-+|+| .|..+..+++ .|. +|++++.+++..+.+++    .+.+.  +...+- ....        ..+.+|
T Consensus        30 ~~grvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~-~~~~--------~~~~fD   97 (198)
T d2i6ga1          30 APGRTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL-NTLT--------FDGEYD   97 (198)
T ss_dssp             CSCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT-TTCC--------CCCCEE
T ss_pred             CCCcEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhheec-cccc--------cccccc
Confidence            34589999987 4777777776 488 99999999998887653    34432  211111 0011        123799


Q ss_pred             EEEEcCCc--------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          213 YCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       213 ~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +|+....-        ...+..+.++|+++ |.++....
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  135 (198)
T d2i6ga1          98 FILSTVVMMFLEAQTIPGLIANMQRCTKPG-GYNLIVAA  135 (198)
T ss_dssp             EEEEESCGGGSCTTHHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             EEEEeeeeecCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            99853321        23577788899998 99888754

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.029  Score=46.22  Aligned_cols=95  Identities=16%  Similarity=0.164  Sum_probs=65.5

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcCCCccEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      ..++.+||-+|+|. |..+..+++.. +. ++++++.+++..+.+++.... ..+..+.   .++     ...++.+|+|
T Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d~---~~l-----~~~~~sfD~v  151 (268)
T d1p91a_          82 DDKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRL-----PFSDTSMDAI  151 (268)
T ss_dssp             CTTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT---TSC-----SBCTTCEEEE
T ss_pred             CCCCCEEEEeCCCC-cHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeeeh---hhc-----cCCCCCEEEE
Confidence            45778999999876 67777777765 56 899999999998888764321 2222111   111     1122379999


Q ss_pred             EEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          215 FECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       215 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +....-.. +.++.++|+|+ |.++....
T Consensus       152 ~~~~~~~~-~~e~~rvLkpg-G~l~~~~p  178 (268)
T d1p91a_         152 IRIYAPCK-AEELARVVKPG-GWVITATP  178 (268)
T ss_dssp             EEESCCCC-HHHHHHHEEEE-EEEEEEEE
T ss_pred             eecCCHHH-HHHHHHHhCCC-cEEEEEee
Confidence            96555444 88999999998 99988754

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.16  Score=41.82  Aligned_cols=77  Identities=21%  Similarity=0.195  Sum_probs=44.2

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCC--EEEEEcCChhHHHH----HHhc---CCc-EEE--cCCCCCCccHHHHHHHhcC
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGAT--RIIGVDVISEKFEI----GKRF---GVT-EFV--NSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~--~V~~~~~~~~~~~~----~~~~---g~~-~vi--~~~~~~~~~~~~~i~~~~~  208 (326)
                      .|||+|+ ++||.++++.+...|+.  .|..+.++.++.+.    ++.+   +.. ..+  |..+  .++..+.+.+...
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~   81 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD--SKSVAAARERVTE   81 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC--HHHHHHHHHTCTT
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc--hHhhhhhhhhccc
Confidence            4567787 89999999998888882  23344444443322    2332   222 222  3332  2333334444444


Q ss_pred             CCccEEEEcCCc
Q 020435          209 GGADYCFECVGL  220 (326)
Q Consensus       209 ~g~d~v~d~~g~  220 (326)
                      +.+|+++++.+.
T Consensus        82 g~idilvnnag~   93 (285)
T d1jtva_          82 GRVDVLVCNAGL   93 (285)
T ss_dssp             SCCSEEEECCCC
T ss_pred             cchhhhhhcccc
Confidence            599999998875

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.03  E-value=0.03  Score=45.90  Aligned_cols=95  Identities=18%  Similarity=0.109  Sum_probs=62.9

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC---cEEEcCCCCCCccHHHHHHHhcC
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV---TEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~---~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      .+++|++||-.++|. |..++.+|+.-++ +|++++.+++..+.+++    .+.   -.++..+.   .       +...
T Consensus       104 ~~~~g~~VlD~~aG~-G~~~l~~a~~~~~-~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~---~-------~~~~  171 (260)
T d2frna1         104 VAKPDELVVDMFAGI-GHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---R-------DFPG  171 (260)
T ss_dssp             HCCTTCEEEETTCTT-TTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---T-------TCCC
T ss_pred             hcCCccEEEECcceE-cHHHHHHHHhCCc-EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch---H-------Hhcc
Confidence            357899999987643 4455566666445 99999999999888753    343   23454433   1       1223


Q ss_pred             C-CccEEE-Ec-CCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          209 G-GADYCF-EC-VGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       209 ~-g~d~v~-d~-~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      . .+|.|+ +. ..+...+..+++.++++ |.+..+..
T Consensus       172 ~~~~D~Ii~~~p~~~~~~l~~a~~~l~~g-G~lh~~~~  208 (260)
T d2frna1         172 ENIADRILMGYVVRTHEFIPKALSIAKDG-AIIHYHNT  208 (260)
T ss_dssp             CSCEEEEEECCCSSGGGGHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCCCEEEECCCCchHHHHHHHHhhcCCC-CEEEEEec
Confidence            3 789776 43 34455577899999998 88766543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.01  E-value=0.044  Score=46.03  Aligned_cols=98  Identities=12%  Similarity=0.100  Sum_probs=65.4

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC----------cEEEcCCCCCCccHHHHHHHh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----------TEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~----------~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ....++|||+|+|. |..+-.++++.+..+|.+++.+++=.+.++++-.          .+++.      .+..+.+++ 
T Consensus       104 ~~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i------~Da~~~l~~-  175 (312)
T d2b2ca1         104 HPDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC------GDGFEFLKN-  175 (312)
T ss_dssp             SSSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC------SCHHHHHHH-
T ss_pred             CCCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEE------chHHHHHHh-
Confidence            34578999998765 4455577777765589999999988888876321          12222      234455554 


Q ss_pred             cCCCccEEE-EcCC---------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          207 TDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       207 ~~~g~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.+.+|+|| |...         +...++.+.++|+++ |.++.-+.
T Consensus       176 ~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~-Gi~v~q~~  221 (312)
T d2b2ca1         176 HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQGE  221 (312)
T ss_dssp             CTTCEEEEEECCC-------------HHHHHHHHEEEE-EEEEEECC
T ss_pred             CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCC-cEEEEecC
Confidence            444899998 4332         234577888999998 99988754

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=94.90  E-value=0.045  Score=42.58  Aligned_cols=90  Identities=17%  Similarity=0.146  Sum_probs=58.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.++.|+|.|.+|..++++++.+|. +|+..++.....+.....+..   ..     .++.+.+.+     .|+|.-+.
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~---~~-----~~l~~ll~~-----sD~v~l~~  111 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEASYQAT---FH-----DSLDSLLSV-----SQFFSLNA  111 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHHHHTCE---EC-----SSHHHHHHH-----CSEEEECC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-ccccccccccccchhhccccc---cc-----CCHHHHHhh-----CCeEEecC
Confidence            37899999999999999999999999 999998765544333322221   11     234444433     67886544


Q ss_pred             C-cHH----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 G-LAS----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g-~~~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      . .+.    +-...++.++++ ..+|.++.
T Consensus       112 plt~~T~~li~~~~l~~mk~~-a~lIN~sR  140 (191)
T d1gdha1         112 PSTPETRYFFNKATIKSLPQG-AIVVNTAR  140 (191)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             CCCchHhheecHHHhhCcCCc-cEEEecCC
Confidence            3 221    123567778886 77776653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.87  E-value=0.05  Score=40.84  Aligned_cols=97  Identities=21%  Similarity=0.292  Sum_probs=69.2

Q ss_pred             hhhhcc-cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC
Q 020435          131 AWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       131 l~~~~~-~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      +.+..+ +-.|.+++|.|-|-+|.-+++-+|.+|+ +|++++.++-+.-++.--|. .+.        +..+.+     +
T Consensus        13 i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf-~v~--------~~~~a~-----~   77 (163)
T d1v8ba1          13 LMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGF-NVV--------TLDEIV-----D   77 (163)
T ss_dssp             HHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTC-EEC--------CHHHHT-----T
T ss_pred             HHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCC-ccC--------chhHcc-----c
Confidence            334433 4579999999999999999999999999 99999999866544443343 221        222222     2


Q ss_pred             CccEEEEcCCcHHH-HHHHHHHhhcCCcEEEEecc
Q 020435          210 GADYCFECVGLASL-VQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       210 g~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..|+++-+.|.... -...++.++++ ..+...|.
T Consensus        78 ~aDi~vTaTGn~~vI~~~h~~~MKdg-aIl~N~GH  111 (163)
T d1v8ba1          78 KGDFFITCTGNVDVIKLEHLLKMKNN-AVVGNIGH  111 (163)
T ss_dssp             TCSEEEECCSSSSSBCHHHHTTCCTT-CEEEECSS
T ss_pred             cCcEEEEcCCCCccccHHHHHHhhCC-eEEEeccc
Confidence            58999999998763 45778889997 65555543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.85  E-value=0.048  Score=43.66  Aligned_cols=47  Identities=23%  Similarity=0.321  Sum_probs=40.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh-cCCc
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT  186 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~-~g~~  186 (326)
                      .|.+|+|.|.|.+|..+++++...|+ +|++++.+..+.+.+.. .|.+
T Consensus        38 ~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~   85 (230)
T d1leha1          38 EGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD   85 (230)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCc
Confidence            58899999999999999999999999 99999998888776544 5553

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.85  E-value=0.012  Score=45.53  Aligned_cols=37  Identities=14%  Similarity=0.160  Sum_probs=31.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  175 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~  175 (326)
                      .+++|+|+|+|+.|+.++..++..|.+.|+++++++.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            3689999999999999999999999845888887653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.79  E-value=0.018  Score=46.74  Aligned_cols=35  Identities=17%  Similarity=0.122  Sum_probs=31.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      ..++|+|+|+|..|++++..++..|. +|+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            46899999999999999999999999 999999754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.024  Score=40.04  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=32.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  176 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~  176 (326)
                      +.+|.|+|+|.+|.++++-|+.+|. ++++.+.+++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCCC
Confidence            3579999999999999999999999 99999877553

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.75  E-value=0.07  Score=43.32  Aligned_cols=35  Identities=29%  Similarity=0.218  Sum_probs=30.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  176 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~  176 (326)
                      .+.||+|+ +++|.+.++.+...|+ +|+.++++.++
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~   37 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEG   37 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH
Confidence            36788887 8999999999999999 99999988654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.69  E-value=0.015  Score=41.80  Aligned_cols=34  Identities=12%  Similarity=0.039  Sum_probs=30.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      .+++++|+|+|.+|+=+++.++.+|. +|..+.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            45789999999999999999999999 88888754

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.69  E-value=0.23  Score=36.73  Aligned_cols=98  Identities=21%  Similarity=0.267  Sum_probs=64.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHc--CCCEEEEEcCChhH---HHHHHhcCCcEEEcCCCCCCccH--------------
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEK---FEIGKRFGVTEFVNSKNCGDKSV--------------  199 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~--g~~~V~~~~~~~~~---~~~~~~~g~~~vi~~~~~~~~~~--------------  199 (326)
                      +.+|.|.|+ |.+|..+..+.+..  .. +|+++.....-   .+.++++.+..+.-.++   ...              
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~---~~~~~l~~~~~~~~~~v   77 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADP---SLYNDLKEALAGSSVEA   77 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCG---GGHHHHHHHTTTCSSEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccH---HHHHHHHHHhhhccccc
Confidence            368999998 99999999999875  34 77777755432   23456788777654433   111              


Q ss_pred             ---HHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          200 ---SQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       200 ---~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                         .+.+.+.....+|+++.++.+-..+.-.+.+++.+  .-+.++.
T Consensus        78 ~~g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~g--k~iaLAN  122 (150)
T d1r0ka2          78 AAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKG--KTVALAN  122 (150)
T ss_dssp             EESHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTT--SEEEECC
T ss_pred             ccCccchheecccccceeeeecCchhHHHHHHHHHhcC--CEEEEec
Confidence               11222222236889998877777688888888885  5555544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.071  Score=44.18  Aligned_cols=98  Identities=13%  Similarity=0.145  Sum_probs=65.3

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC----------CcEEEcCCCCCCccHHHHHHHh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----------VTEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g----------~~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ....++|||+|+|. |..+-.++++.+..+|++++-+++-.+.++++-          -.+++..      +-.+.+++ 
T Consensus        76 ~~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~------Da~~~l~~-  147 (285)
T d2o07a1          76 HPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG------DGFEFMKQ-  147 (285)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES------CHHHHHHT-
T ss_pred             CcCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEc------cHHHHHhc-
Confidence            34678999998765 555666777766669999999988877776532          1233322      23344443 


Q ss_pred             cCCCccEEE-EcCC---------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          207 TDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       207 ~~~g~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.+.+|+|+ |...         +...++.+-+.|+++ |.++.-..
T Consensus       148 ~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~~  193 (285)
T d2o07a1         148 NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQGE  193 (285)
T ss_dssp             CSSCEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC-CeEEEecc
Confidence            344899998 6443         234578889999998 99887654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.68  E-value=0.52  Score=34.43  Aligned_cols=95  Identities=14%  Similarity=0.008  Sum_probs=60.1

Q ss_pred             CEEEEEc-cCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC--CccEEEEc
Q 020435          141 STVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG--GADYCFEC  217 (326)
Q Consensus       141 ~~vlI~G-ag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~--g~d~v~d~  217 (326)
                      .+|.|+| .|.+|..++..++..|. .|.+.+++++........+++.++....  .....+.+.+..+.  .=.+++|+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~   86 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP--INLTLETIERLKPYLTENMLLADL   86 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc--hhhheeeeecccccccCCceEEEe
Confidence            5899999 69999999999999999 9999999887766655556666654433  23344444444433  22366787


Q ss_pred             CCcHHHHHHHHHHhhcCCcEEEE
Q 020435          218 VGLASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       218 ~g~~~~~~~~~~~l~~~~G~~v~  240 (326)
                      .+........+....+  .+++.
T Consensus        87 ~Svk~~~~~~~~~~~~--~~~v~  107 (152)
T d2pv7a2          87 TSVKREPLAKMLEVHT--GAVLG  107 (152)
T ss_dssp             CSCCHHHHHHHHHHCS--SEEEE
T ss_pred             cccCHHHHHHHHHHcc--CCEEE
Confidence            7654323333333333  35543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.044  Score=43.62  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHh----cCCcEEEcCCCCCCccHHHHHHHh-
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM-  206 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~-  206 (326)
                      ...+....++||-+|.+. |..++.+|+.+. -++|+.++.+++..+.+++    .|....+....   .+..+.+.+. 
T Consensus        53 ~L~~~~~~k~vLEiGt~~-GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~---Gda~e~l~~~~  128 (219)
T d2avda1          53 NLARLIQAKKALDLGTFT-GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL---KPALETLDELL  128 (219)
T ss_dssp             HHHHHTTCCEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHH
T ss_pred             HHHHccCCCeEEEEechh-hHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEE---eehhhcchhhh
Confidence            345556788999998754 777788888763 1399999999988776654    45322222111   2333434333 


Q ss_pred             ---cCCCccEEE-EcCCcHH--HHHHHHHHhhcCCcEEEEe
Q 020435          207 ---TDGGADYCF-ECVGLAS--LVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       207 ---~~~g~d~v~-d~~g~~~--~~~~~~~~l~~~~G~~v~~  241 (326)
                         ..+.+|.|| |+--...  .+..+++.|+++ |.++.=
T Consensus       129 ~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G-Gvii~D  168 (219)
T d2avda1         129 AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVL  168 (219)
T ss_dssp             HTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             hhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCC-cEEEEe
Confidence               233899998 5444432  377899999997 776653

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.64  E-value=0.26  Score=37.33  Aligned_cols=96  Identities=18%  Similarity=0.131  Sum_probs=62.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC-CCEEEEEcC-C-hhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHh----------cC
Q 020435          142 TVVIFGLGSIGLAVAEGARLCG-ATRIIGVDV-I-SEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM----------TD  208 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~-~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~----------~~  208 (326)
                      +|.|.|-|-||..+++.+.... . +++++.. + ......+...+.+......+    . .....+.          ..
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~   77 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASEE----F-IPRFEKEGFEVAGTLNDLL   77 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSGG----G-HHHHHHHTCCCSCBHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeeccccc----c-eeeecccCccccchhhhhh
Confidence            7899999999999988886543 4 6666652 2 23344555666543332111    1 1111110          01


Q ss_pred             CCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          209 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       209 ~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      .++|+|+||.|.-...+.+-..+..+ -+.|..+..
T Consensus        78 ~~vDvViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~  112 (172)
T d2czca2          78 EKVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGE  112 (172)
T ss_dssp             TTCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTS
T ss_pred             ccCCEEEECCCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence            27999999999877678888899998 898888764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.61  E-value=0.045  Score=38.91  Aligned_cols=43  Identities=21%  Similarity=0.139  Sum_probs=37.1

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      +.+.....++.+|+|.|+|.+|+=++..++..|. +|..+.+.+
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            4556677789999999999999999999999998 899998764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.61  E-value=0.03  Score=47.61  Aligned_cols=46  Identities=24%  Similarity=0.239  Sum_probs=38.5

Q ss_pred             cccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 020435          135 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  181 (326)
Q Consensus       135 ~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~  181 (326)
                      .-+.+|++|||+|+ |-+|..+++.+...|. +|++++++.++.+.++
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence            34677999999987 9999999988888898 9999999887766553

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.037  Score=43.16  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=35.1

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  180 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~  180 (326)
                      .+|.|+|+|.+|...++++...|. .|+..+++++.++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHH
Confidence            489999999999999999999999 999999999876654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.55  E-value=0.042  Score=42.83  Aligned_cols=89  Identities=20%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..++++++.+|+ +|+..++...... ....+...   .     .++.+.+.+     .|+|.-+.
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~-~~~~~~~~---~-----~~l~~ll~~-----sD~i~~~~  112 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDGV-ERALGLQR---V-----STLQDLLFH-----SDCVTLHC  112 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTTH-HHHHTCEE---C-----SSHHHHHHH-----CSEEEECC
T ss_pred             eCceEEEeccccccccceeeeecccc-ceeeccCcccccc-hhhhcccc---c-----cchhhcccc-----CCEEEEee
Confidence            57899999999999999999999999 9999987644322 22233321   1     234333333     67776544


Q ss_pred             C-cHH----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 G-LAS----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g-~~~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      . .+.    .-...++.++++ ..+|.++.
T Consensus       113 plt~~T~~li~~~~l~~mk~~-a~lIN~sR  141 (193)
T d1mx3a1         113 GLNEHNHHLINDFTVKQMRQG-AFLVNTAR  141 (193)
T ss_dssp             CCCTTCTTSBSHHHHTTSCTT-EEEEECSC
T ss_pred             cccccchhhhhHHHHhccCCC-CeEEecCC
Confidence            3 221    122456677776 66666653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.55  E-value=0.035  Score=44.80  Aligned_cols=89  Identities=13%  Similarity=0.121  Sum_probs=58.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EEEcCCCCCCccHHHHHHHhc-CCCc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMT-DGGA  211 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~-~~g~  211 (326)
                      .++.+||-+|+|. |..+..+++ .|. +|++++.|++..+.+++    .+.. .++..+-          ..+. .+.+
T Consensus        36 ~~~~~vLDiGCG~-G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~----------~~~~~~~~f  102 (246)
T d1y8ca_          36 LVFDDYLDLACGT-GNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI----------SNLNINRKF  102 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCG----------GGCCCSCCE
T ss_pred             CCCCeEEEEeCcC-CHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCccceeeccch----------hhhcccccc
Confidence            3467999999874 666666665 477 89999999998877654    3321 3332211          1122 2389


Q ss_pred             cEEEEcCCc----------HHHHHHHHHHhhcCCcEEEE
Q 020435          212 DYCFECVGL----------ASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       212 d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~  240 (326)
                      |+|+...+.          ...++.+.+.|+++ |.++.
T Consensus       103 D~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~  140 (246)
T d1y8ca_         103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFIF  140 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE-EEEEE
T ss_pred             cccceeeeeeeccCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence            999864332          12477888899998 98875

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.48  E-value=0.097  Score=40.48  Aligned_cols=98  Identities=14%  Similarity=0.134  Sum_probs=63.1

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC--c--EEEcCCCCCCccHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV--T--EFVNSKNCGDKSVSQI  202 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~--~--~vi~~~~~~~~~~~~~  202 (326)
                      +.+.....++++||-.|+|. |..++.+++ .+. +|++++.++...+.+++    .+.  .  .++..+.      .  
T Consensus        44 Li~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~------~--  112 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGY-GVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL------Y--  112 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST------T--
T ss_pred             HHHhCCcCCCCeEEEEeecC-ChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcch------h--
Confidence            55667788999999998754 555555665 455 89999999988887753    222  1  2332221      0  


Q ss_pred             HHHhcCCCccEEEEcC----Cc---HHHHHHHHHHhhcCCcEEEEe
Q 020435          203 IIDMTDGGADYCFECV----GL---ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       203 i~~~~~~g~d~v~d~~----g~---~~~~~~~~~~l~~~~G~~v~~  241 (326)
                       ....++.+|+|+...    +.   ...++.+.+.|+++ |.+++.
T Consensus       113 -~~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  156 (194)
T d1dusa_         113 -ENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVV  156 (194)
T ss_dssp             -TTCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -hhhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC-cEEEEE
Confidence             111223899999522    21   23467788999998 988664

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.46  E-value=0.076  Score=43.82  Aligned_cols=96  Identities=15%  Similarity=0.164  Sum_probs=62.8

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC-C---------------cEEEcCCCCCCccHH
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-V---------------TEFVNSKNCGDKSVS  200 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g-~---------------~~vi~~~~~~~~~~~  200 (326)
                      ..+..+|||+|+|. |..+-.+++.-. .+|.+++.+++=.+.++++- .               -+++..      +..
T Consensus        70 ~~~p~~vLiiG~G~-G~~~~~~l~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~------Da~  141 (276)
T d1mjfa_          70 HPKPKRVLVIGGGD-GGTVREVLQHDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIG------DGF  141 (276)
T ss_dssp             SSCCCEEEEEECTT-SHHHHHHTTSCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEES------CHH
T ss_pred             CCCCceEEEecCCc-hHHHHHHHHhCC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEC------hHH
Confidence            35678999998654 333445555544 48999999988888776522 1               134432      233


Q ss_pred             HHHHHhcCCCccEEE-EcCCc---------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          201 QIIIDMTDGGADYCF-ECVGL---------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       201 ~~i~~~~~~g~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.+++  .+++|+|| |+...         ...++.+.+.|+++ |.++.-+.
T Consensus       142 ~~l~~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~-Gv~v~q~~  191 (276)
T d1mjfa_         142 EFIKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQAG  191 (276)
T ss_dssp             HHHHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             HHHhc--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC-ceEEEecC
Confidence            44443  34899997 65542         35688899999998 99887653

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.40  E-value=0.045  Score=42.44  Aligned_cols=90  Identities=16%  Similarity=0.083  Sum_probs=58.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+.+|.|+|.|.+|..++++++.+|. +|+..++........+..+....        .++.+.+.     ..|+|.-+.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~~--------~~l~~~l~-----~sD~v~~~~  108 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH--------ATREDMYP-----VCDVVTLNC  108 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHGG-----GCSEEEECS
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeecccccccccccccccc--------CCHHHHHH-----hccchhhcc
Confidence            57899999999999999999999999 99999986655555554443211        12222221     367776544


Q ss_pred             Cc-HH----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 GL-AS----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g~-~~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .- +.    +-...++.++++ ..+|.++.
T Consensus       109 plt~~T~~li~~~~l~~mk~g-a~lIN~aR  137 (188)
T d2naca1         109 PLHPETEHMINDETLKLFKRG-AYIVNTAR  137 (188)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             cccccchhhhHHHHHHhCCCC-CEEEecCc
Confidence            32 11    123566777776 66666543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=94.26  E-value=0.017  Score=46.16  Aligned_cols=94  Identities=19%  Similarity=0.227  Sum_probs=62.7

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHH---cCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHHh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARL---CGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~---~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ++++.+||-+|+|. |..+..+++.   .++ +|++++.|++..+.+++    .+..   +..+.+.   .       ..
T Consensus        37 ~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~---~-------~~  104 (225)
T d1im8a_          37 VTADSNVYDLGCSR-GAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI---R-------HV  104 (225)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT---T-------TC
T ss_pred             cCCCCEEEEeccch-hhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh---h-------cc
Confidence            67899999999865 6666667764   467 99999999998888764    2321   2222221   1       11


Q ss_pred             cCCCccEEEEcCCc--------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          207 TDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       207 ~~~g~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..+.+|+++.+..-        ...++.+.+.|+|+ |.++....
T Consensus       105 ~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~~  148 (225)
T d1im8a_         105 EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSEK  148 (225)
T ss_dssp             CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeecccc
Confidence            11266777643221        24588999999998 99998754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.021  Score=37.45  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=31.0

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  176 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~  176 (326)
                      ++|.|.|+|.+|.+.++-++.+|. ++.+.+.+++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCCC
Confidence            478999999999999999999999 99999866544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.24  E-value=0.1  Score=43.45  Aligned_cols=97  Identities=15%  Similarity=0.145  Sum_probs=64.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC----------CcEEEcCCCCCCccHHHHHHHhc
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----------VTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g----------~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ...++|||+|+|. |..+-.++++.+..+|.+++.+++-.+.++++-          --+++.      .+..+.+++ +
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~------~Da~~~l~~-~  159 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI------ANGAEYVRK-F  159 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHGGG-C
T ss_pred             CCCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh------hhHHHHHhc-C
Confidence            4568999998755 445666777776558999999998887776532          113332      223344433 3


Q ss_pred             CCCccEEE-EcCC----------cHHHHHHHHHHhhcCCcEEEEecc
Q 020435          208 DGGADYCF-ECVG----------LASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       208 ~~g~d~v~-d~~g----------~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ++.+|+|| |+..          +...++.+.+.|+++ |.++.-..
T Consensus       160 ~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~-Gi~v~q~~  205 (295)
T d1inla_         160 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAETE  205 (295)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC-cEEEEecC
Confidence            34899998 5432          234688999999998 99887654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.18  E-value=0.03  Score=45.79  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .+|||+|+ |-+|..++..++..|. +|+++++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV-EVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEeechh
Confidence            47999997 9999999999999998 999998653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.034  Score=42.80  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      ...+.+|+|+|+|+.|+.++..+...|. +|+..++.+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            4567899999999999999999999998 999999765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.16  E-value=0.044  Score=38.92  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=33.8

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      ..++.+++|+|+|+|.+|.=++..++.+|. +|..+.+.+
T Consensus        17 ~~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          17 FNIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TTCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             hccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            345567899999999999999999999999 999998754

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=94.15  E-value=0.046  Score=46.17  Aligned_cols=98  Identities=11%  Similarity=0.057  Sum_probs=60.9

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc--EEEcCCCCCCccHHHHHHHhc--C
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIIDMT--D  208 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~--~  208 (326)
                      ..+|++||=.++|. |..++++|+ -+. +|++++.+++..+.+++    .|.+  .++..      +..+.++.+.  +
T Consensus       143 ~~~g~rVLDl~~gt-G~~s~~~a~-g~~-~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~------d~~~~~~~~~~~~  213 (318)
T d1wxxa2         143 RFRGERALDVFSYA-GGFALHLAL-GFR-EVVAVDSSAEALRRAEENARLNGLGNVRVLEA------NAFDLLRRLEKEG  213 (318)
T ss_dssp             GCCEEEEEEETCTT-THHHHHHHH-HEE-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEES------CHHHHHHHHHHTT
T ss_pred             HhCCCeeeccCCCC-cHHHHHHHh-cCC-cEEeecchHHHHHHHHHHHHHcCCCCcceeec------cHHHHhhhhHhhh
Confidence            34689999887643 333345554 244 89999999999888764    4543  23322      3333333332  2


Q ss_pred             CCccEEE-EcCCc--------------HHHHHHHHHHhhcCCcEEEEeccC
Q 020435          209 GGADYCF-ECVGL--------------ASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       209 ~g~d~v~-d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      +.||+|+ |....              ...+..++++|+|+ |.++.+..+
T Consensus       214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~scs  263 (318)
T d1wxxa2         214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASCS  263 (318)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred             cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence            3899998 53221              12456778899998 998887653

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.13  E-value=0.1  Score=43.88  Aligned_cols=96  Identities=17%  Similarity=0.232  Sum_probs=56.0

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH---HHhcCC---cEEEcCCCCCCccHHHHHHHh
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI---GKRFGV---TEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~---~~~~g~---~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      +...+.+|++||-+|+|. |.+++.+|+ .|+.+|++++.++.....   ++..+.   -.++..+.   .++     ..
T Consensus        27 ~~~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~---~~~-----~~   96 (316)
T d1oria_          27 HNRHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV---EEV-----EL   96 (316)
T ss_dssp             TCHHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCT---TTC-----CC
T ss_pred             hccccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccH---HHc-----cc
Confidence            334466899999999875 666665555 577689999987643222   222332   22333222   111     01


Q ss_pred             cCCCccEEEE-cCCc--------HHHHHHHHHHhhcCCcEEE
Q 020435          207 TDGGADYCFE-CVGL--------ASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       207 ~~~g~d~v~d-~~g~--------~~~~~~~~~~l~~~~G~~v  239 (326)
                      ..+.+|+|+. ..+.        +..+...-+.|+++ |.++
T Consensus        97 ~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~-G~ii  137 (316)
T d1oria_          97 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-GLIF  137 (316)
T ss_dssp             SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             ccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC-eEEE
Confidence            1128999974 3321        23355667899998 8876

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.13  E-value=0.084  Score=40.67  Aligned_cols=88  Identities=24%  Similarity=0.330  Sum_probs=58.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+.++.|+|.|.+|..++++++.+|. +|++.++........ ..+.. .        .++.+.+.+     .|+|.-+.
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~~-~~~~~-~--------~~l~ell~~-----sDiv~~~~  106 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARAA-QLGIE-L--------LSLDDLLAR-----ADFISVHL  106 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHHH-HHTCE-E--------CCHHHHHHH-----CSEEEECC
T ss_pred             cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHHh-hcCce-e--------ccHHHHHhh-----CCEEEEcC
Confidence            47899999999999999999999999 999998765544332 33332 1        233333333     78887544


Q ss_pred             C-cHH----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 G-LAS----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g-~~~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      . .+.    +-...++.++++ ..+|-++.
T Consensus       107 Plt~~T~~lin~~~l~~mk~~-a~lIN~sR  135 (184)
T d1ygya1         107 PKTPETAGLIDKEALAKTKPG-VIIVNAAR  135 (184)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCchhhhhhhHHHHhhhCCC-ceEEEecc
Confidence            4 222    123566777776 66666653

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=94.09  E-value=0.53  Score=38.58  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=65.7

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcC---ChhHHHHHHhcCCcEEEcCCCC---------------
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKRFGVTEFVNSKNC---------------  194 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~---~~~~~~~~~~~g~~~vi~~~~~---------------  194 (326)
                      +...+.+..+|+...+|+.|++++..++.+|. +++++..   ++.+.+.++.+|++.++...+.               
T Consensus        53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~-~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~  131 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGY-RMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANR  131 (292)
T ss_dssp             HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHH
T ss_pred             HhCCcCCCceeeeecccchhHHHHHHHHhcCc-ceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhcccc
Confidence            44445556666655779999999999999998 5444442   5567788899998654332220               


Q ss_pred             ---------CC-cc-------HHHHHHHhcCCCccEEEEcCCcHHHHHHH---HHHhhcCCcEEEEecc
Q 020435          195 ---------GD-KS-------VSQIIIDMTDGGADYCFECVGLASLVQEA---YACCRKGWGKTIVLGV  243 (326)
Q Consensus       195 ---------~~-~~-------~~~~i~~~~~~g~d~v~d~~g~~~~~~~~---~~~l~~~~G~~v~~g~  243 (326)
                               .+ .+       ...++.+..++.+|.++-++|+.-.+.-.   ++...+. .+++.+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~-~~i~~Vep  199 (292)
T d2bhsa1         132 GEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKP-VTIVGLQP  199 (292)
T ss_dssp             TSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSC-CEEEEEEE
T ss_pred             ccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCc-ceEEEecc
Confidence                     00 00       11233333444689998888865544433   3444555 66665543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.07  E-value=0.031  Score=43.45  Aligned_cols=78  Identities=14%  Similarity=0.136  Sum_probs=54.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCC-----------cEEEcCCCCCCccHHHHHHHhcCCC
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-----------TEFVNSKNCGDKSVSQIIIDMTDGG  210 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~-----------~~vi~~~~~~~~~~~~~i~~~~~~g  210 (326)
                      +|.|+|+|..|.+++.++...|. +|....++++..+.+.+-+.           +.+...     .++.+.+.     +
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t-----~~l~~a~~-----~   77 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT-----SDVEKAYN-----G   77 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEE-----SCHHHHHT-----T
T ss_pred             eEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccc-----hhhhhccC-----C
Confidence            79999999999999988888887 89999999988887754221           111111     12333221     5


Q ss_pred             ccEEEEcCCcHHHHHHHHHHh
Q 020435          211 ADYCFECVGLASLVQEAYACC  231 (326)
Q Consensus       211 ~d~v~d~~g~~~~~~~~~~~l  231 (326)
                      .|++|-++.... +...++.+
T Consensus        78 ad~iiiavPs~~-~~~~~~~~   97 (189)
T d1n1ea2          78 AEIILFVIPTQF-LRGFFEKS   97 (189)
T ss_dssp             CSCEEECSCHHH-HHHHHHHH
T ss_pred             CCEEEEcCcHHH-HHHHHHHH
Confidence            899999998876 55555443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.99  E-value=0.035  Score=48.11  Aligned_cols=31  Identities=32%  Similarity=0.302  Sum_probs=27.8

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEc
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  171 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~  171 (326)
                      |.+|||+|+ |-+|..+++.+...|. +|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            689999997 9999999999999998 999986

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.92  E-value=0.03  Score=45.95  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=30.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      +++|+|+|+|..|+.++..++..|. +|++++.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            5789999999999999999999999 999998653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.86  E-value=0.2  Score=38.03  Aligned_cols=43  Identities=12%  Similarity=0.098  Sum_probs=37.2

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  184 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g  184 (326)
                      .+|-++|.|.+|..++.-+...|. +|++.++++++.+.+.+.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~   45 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANE   45 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhc
Confidence            468899999999988888888898 9999999999998876654

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.84  E-value=0.18  Score=36.55  Aligned_cols=74  Identities=15%  Similarity=0.203  Sum_probs=43.6

Q ss_pred             EEEEEcc-CHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          142 TVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~-~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      +|.|.|+ |-+|..+++.... .+. ++++.....+.....                          ...++|+++|...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~~d~~~~~~~~--------------------------~~~~~DvvIDFS~   53 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAELDAGDPLSLL--------------------------TDGNTEVVIDFTH   53 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTS-EEEEEECTTCCTHHH--------------------------HTTTCSEEEECCC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCchhhh--------------------------ccccCCEEEEccc
Confidence            6889997 9999999988765 456 555443221111111                          1125777777776


Q ss_pred             cHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          220 LASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       220 ~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ... ....++.+... |.=+.+|.+
T Consensus        54 p~~-~~~~~~~~~~~-~~~~ViGTT   76 (135)
T d1yl7a1          54 PDV-VMGNLEFLIDN-GIHAVVGTT   76 (135)
T ss_dssp             TTT-HHHHHHHHHHT-TCEEEECCC
T ss_pred             HHH-HHHHHHHHHhc-CCCEEEecc
Confidence            555 44444444444 555666654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.77  E-value=0.13  Score=41.81  Aligned_cols=41  Identities=22%  Similarity=0.171  Sum_probs=32.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHH-HHH--cCCCEEEEEcCChhHHHHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEG-ARL--CGATRIIGVDVISEKFEIG  180 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~l-a~~--~g~~~V~~~~~~~~~~~~~  180 (326)
                      .|+++||+|+ ++||.++++. |+.  .|+ +|+.+++++++.+.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~   49 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHH
Confidence            4667788887 8999988764 453  688 999999999887765

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.74  E-value=0.42  Score=37.14  Aligned_cols=94  Identities=13%  Similarity=0.175  Sum_probs=63.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEE--EcCCCCCCccHHHHHHHhcCC-Ccc
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF--VNSKNCGDKSVSQIIIDMTDG-GAD  212 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~v--i~~~~~~~~~~~~~i~~~~~~-g~d  212 (326)
                      ...||-+|+|. |..++.+|+...-..+++++.++.....+    ++.+.+.+  +..+.   ..    +.+.... .+|
T Consensus        30 ~PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da---~~----l~~~~~~~~~d  101 (204)
T d2fcaa1          30 NPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA---DT----LTDVFEPGEVK  101 (204)
T ss_dssp             CCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG---GG----HHHHCCTTSCC
T ss_pred             CceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccch---hh----hhcccCchhhh
Confidence            45677778877 88888999986433999999999877654    34565433  33222   22    2233333 788


Q ss_pred             EEEEcCCc--------------HHHHHHHHHHhhcCCcEEEEec
Q 020435          213 YCFECVGL--------------ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       213 ~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .|+-....              +..+..+.+.|+++ |.+.+..
T Consensus       102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg-G~l~i~T  144 (204)
T d2fcaa1         102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG-GSIHFKT  144 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS-CEEEEEE
T ss_pred             ccccccccccchhhhcchhhhHHHHHHHHHHhCCCC-cEEEEEE
Confidence            88754433              35688899999998 9987763

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.64  Score=39.36  Aligned_cols=109  Identities=22%  Similarity=0.281  Sum_probs=68.4

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEc---CChhHHHHHHhcCCcEEEcCCCC---------------
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD---VISEKFEIGKRFGVTEFVNSKNC---------------  194 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~---~~~~~~~~~~~~g~~~vi~~~~~---------------  194 (326)
                      +...++++..|+...+|+.|.+++..|+.+|. +.+++.   .++++.+.++.+|++.+......               
T Consensus        90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi-~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~  168 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGY-RCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRL  168 (355)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHH
T ss_pred             HcCCcccCceEEEecccchhhHHHHHHHhccC-CeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHH
Confidence            34445666666666779999999999999999 554444   35567888899998755421110               


Q ss_pred             --------------CC-------ccHHHHHHHhcCCCccEEEEcCCcHHHHHH---HHHHhhcCCcEEEEecc
Q 020435          195 --------------GD-------KSVSQIIIDMTDGGADYCFECVGLASLVQE---AYACCRKGWGKTIVLGV  243 (326)
Q Consensus       195 --------------~~-------~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~---~~~~l~~~~G~~v~~g~  243 (326)
                                    .+       .....++.+..++.+|.++-++|+...+.-   .++...++ .+++.+..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~-~kii~vep  240 (355)
T d1jbqa_         169 KNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPG-CRIIGVDP  240 (355)
T ss_dssp             HHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEEE
T ss_pred             HHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCc-ceEEeecc
Confidence                          00       012223434445578999999987554443   34455556 77776654

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.11  Score=43.81  Aligned_cols=76  Identities=18%  Similarity=0.182  Sum_probs=47.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  219 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g  219 (326)
                      .+|||+|+ |-+|..+++.+...|..+|++++....+...+.+..--..+..+-....++.+.+.+    ++|+|+.+++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~----~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK----KCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH----HCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHh----CCCccccccc
Confidence            37999987 999999998887777338999987665544443322112332221012344443333    6999999887


Q ss_pred             c
Q 020435          220 L  220 (326)
Q Consensus       220 ~  220 (326)
                      .
T Consensus        77 ~   77 (342)
T d2blla1          77 I   77 (342)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.055  Score=45.80  Aligned_cols=73  Identities=18%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC----hhHHHHHHh---cCCcEEEcCCCCCCccHHHHHHHhcCC-Cc
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI----SEKFEIGKR---FGVTEFVNSKNCGDKSVSQIIIDMTDG-GA  211 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~----~~~~~~~~~---~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~  211 (326)
                      .+|||+|+ |-+|..++..+...|. +|+++++.    .......+.   -+.+. +..+- .+.   +.+.+.... ++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl-~d~---~~l~~~~~~~~~   74 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTF-VEGDI-RNE---ALMTEILHDHAI   74 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEE-EECCT-TCH---HHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEE-EEeec-CCH---HHHHHHHhccCC
Confidence            37999987 9999999999999998 89998742    222232222   23332 22221 112   223333323 79


Q ss_pred             cEEEEcCC
Q 020435          212 DYCFECVG  219 (326)
Q Consensus       212 d~v~d~~g  219 (326)
                      |+||.+++
T Consensus        75 d~ViHlAa   82 (338)
T d1udca_          75 DTVIHFAG   82 (338)
T ss_dssp             SEEEECCS
T ss_pred             CEEEECCC
Confidence            99999875

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.62  E-value=0.059  Score=38.06  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=31.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .+++++|+|+|.+|+=+++.+..+|. +|..+.+.+
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   55 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAG   55 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             cCCeEEEECCCccceeeeeeeccccc-EEEEEEecc
Confidence            45899999999999999999999999 999998664

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.092  Score=44.76  Aligned_cols=75  Identities=13%  Similarity=0.099  Sum_probs=43.4

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh-----HHHHHHhc----CCc-EEEcCCCCCCccHHHHHHHhcCC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-----KFEIGKRF----GVT-EFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~-----~~~~~~~~----g~~-~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      .+|||+|+ |-+|..++..+...|. +|+++++...     +.+.+...    ... .++.. +   -.-.+.+.+...+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-D---l~d~~~~~~~~~~   76 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG-D---LSDTSNLTRILRE   76 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC---------------------CCEEECCC-C---SSCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEe-e---cCCHHHHHHHHhc
Confidence            57889987 9999999999988898 9999997433     22222111    111 11111 1   1113344444445


Q ss_pred             -CccEEEEcCCc
Q 020435          210 -GADYCFECVGL  220 (326)
Q Consensus       210 -g~d~v~d~~g~  220 (326)
                       .+|+|+++++.
T Consensus        77 ~~~d~v~h~aa~   88 (357)
T d1db3a_          77 VQPDEVYNLGAM   88 (357)
T ss_dssp             HCCSEEEECCCC
T ss_pred             cCCCEEEEeecc
Confidence             78999998764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.60  E-value=0.061  Score=41.10  Aligned_cols=38  Identities=26%  Similarity=0.297  Sum_probs=33.9

Q ss_pred             EEEEE-ccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 020435          142 TVVIF-GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  180 (326)
Q Consensus       142 ~vlI~-Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~  180 (326)
                      +|.|+ |+|++|.++++.+...|. +|++..|++++.+.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l   40 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAK   40 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            68898 569999999999999999 999999999887665

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.53  E-value=0.19  Score=37.02  Aligned_cols=74  Identities=14%  Similarity=0.096  Sum_probs=47.6

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      +|-|+|.|.+|..+++-++..|. .|++..+.+++....+..+.... +.       ..+.++     ..|+||-|+...
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~-~~-------~~e~~~-----~~diIi~~v~~~   67 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIERARTVGVT-ET-------SEEDVY-----SCPVVISAVTPG   67 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHHHHHHTCE-EC-------CHHHHH-----TSSEEEECSCGG
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHhhhccccc-cc-------HHHHHh-----hcCeEEEEecCc
Confidence            68899999999999999988898 88888877766655543332211 11       111111     477777777766


Q ss_pred             HHHHHHHH
Q 020435          222 SLVQEAYA  229 (326)
Q Consensus       222 ~~~~~~~~  229 (326)
                      .....+..
T Consensus        68 ~~~~~~~~   75 (152)
T d1i36a2          68 VALGAARR   75 (152)
T ss_dssp             GHHHHHHH
T ss_pred             hHHHHHHh
Confidence            54444333

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=93.51  E-value=0.061  Score=44.22  Aligned_cols=38  Identities=16%  Similarity=0.167  Sum_probs=29.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC-hhHHHH
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEI  179 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~-~~~~~~  179 (326)
                      ..+||+|+ +++|.++++.+...|+ +|+.+++. +++.+.
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~   42 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANA   42 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHH
Confidence            35678887 8999999999999999 88877654 444433

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.67  Score=34.07  Aligned_cols=97  Identities=25%  Similarity=0.234  Sum_probs=65.3

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcC--CCEEEEEcCChhH---HHHHHhcCCcEEEcCCCCCCccHH---------------
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEK---FEIGKRFGVTEFVNSKNCGDKSVS---------------  200 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g--~~~V~~~~~~~~~---~~~~~~~g~~~vi~~~~~~~~~~~---------------  200 (326)
                      +|.|.|+ |.+|..+..+.+...  . +|+++.....-   .+.+++|.+..++-.++   ....               
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~---~~~~~l~~~l~~~~~~~~~   78 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDE---ASAKLLKTMLQQQGSRTEV   78 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSH---HHHHHHHHHHHHTTCCCEE
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccH---HHHHHHHHHhhhhcccccc
Confidence            6899998 999999999998763  4 77777654433   23356688777665443   2211               


Q ss_pred             ----HHHHHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          201 ----QIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       201 ----~~i~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                          +.+.++... .+|+|+.+..+-..+.-.+.+++.+  .-+.++..
T Consensus        79 ~~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~g--k~iaLANK  125 (151)
T d1q0qa2          79 LSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAG--KTILLANK  125 (151)
T ss_dssp             EESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTT--CEEEECCH
T ss_pred             ccChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcC--CeEEEEcc
Confidence                122333333 7899998888877788888888885  55666543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.12  Score=41.65  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=30.2

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      ..+|+|+|+|++|..+++.+...|.+++..++.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            569999999999999999999999988999884

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=93.40  E-value=0.61  Score=35.08  Aligned_cols=97  Identities=23%  Similarity=0.285  Sum_probs=60.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh--hHHHHHHhcCCcEEEcCCC---------CC-CccHHHHHHHhcCC
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRFGVTEFVNSKN---------CG-DKSVSQIIIDMTDG  209 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~--~~~~~~~~~g~~~vi~~~~---------~~-~~~~~~~i~~~~~~  209 (326)
                      +|.|.|-|-+|..+.+++...+--+++++....  .....+...+.+......+         +. ..++.+    +. .
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~----~~-~   77 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDD----ML-D   77 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHH----HH-H
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhH----hh-c
Confidence            688999999999999988765422666655322  2334444555443332211         00 011111    11 1


Q ss_pred             CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          210 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       210 g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++|+|+||.|.-.....+-..+..+ -+.|..+..
T Consensus        78 ~vDvViEcTG~f~~~~~~~~hl~~G-~K~vi~~~~  111 (171)
T d1cf2o1          78 EADIVIDCTPEGIGAKNLKMYKEKG-IKAIFQGGE  111 (171)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTS
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence            7999999999877677788888887 888877643

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.20  E-value=0.63  Score=35.27  Aligned_cols=95  Identities=20%  Similarity=0.229  Sum_probs=57.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCEEEEEcC-Chh-HHHHHHhcCCcEEEcCCC--------CC-CccHHHHHHHhcCC
Q 020435          142 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDV-ISE-KFEIGKRFGVTEFVNSKN--------CG-DKSVSQIIIDMTDG  209 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~-~~~-~~~~~~~~g~~~vi~~~~--------~~-~~~~~~~i~~~~~~  209 (326)
                      +|.|.|-|-+|..+++.+... .. +++++.. ++. ....+...+.......+.        +. ..++.+..     .
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~-----~   76 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-----K   76 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-----H
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh-----h
Confidence            688999999999999998865 45 7777653 222 223333333222111111        00 01111111     1


Q ss_pred             CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          210 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       210 g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ++|+|+||.|.-...+.+-..+..+ -+++..+.
T Consensus        77 ~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~  109 (178)
T d1b7go1          77 TSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGG  109 (178)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTT
T ss_pred             cCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECC
Confidence            5899999999876667777788776 67777654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.045  Score=43.77  Aligned_cols=75  Identities=19%  Similarity=0.235  Sum_probs=46.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHhcCCcEE-EcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      ...+|||+|+ |-+|..+++.+...|. .+|++++|++.+...-..-..... .|..+      .+.+.+... ++|+++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~------~~~~~~~~~-~~d~vi   85 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK------LDDYASAFQ-GHDVGF   85 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG------GGGGGGGGS-SCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccc------ccccccccc-cccccc
Confidence            3469999998 9999999998877773 389999987654332221122222 12211      112222222 799999


Q ss_pred             EcCCc
Q 020435          216 ECVGL  220 (326)
Q Consensus       216 d~~g~  220 (326)
                      .|++.
T Consensus        86 ~~~~~   90 (232)
T d2bkaa1          86 CCLGT   90 (232)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            99875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.11  E-value=0.2  Score=42.12  Aligned_cols=95  Identities=21%  Similarity=0.300  Sum_probs=53.9

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCC---cEEEcCCCCCCccHHHHHHH
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGV---TEFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~---~~vi~~~~~~~~~~~~~i~~  205 (326)
                      +.....++++||-+|+|. |.++..+|+ .|+.+|++++.++ ..+.+    ++.+.   -.++..+.   .++     .
T Consensus        32 ~~~~~~~~~~VLDlGcGt-G~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~---~~l-----~  100 (328)
T d1g6q1_          32 QNKDLFKDKIVLDVGCGT-GILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL---EDV-----H  100 (328)
T ss_dssp             HHHHHHTTCEEEEETCTT-SHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---TTS-----C
T ss_pred             hccccCCcCEEEEeCCCC-CHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh---hhc-----c
Confidence            344556899999999864 555554444 6776999999875 33333    33332   12333222   111     1


Q ss_pred             hcCCCccEEEEc-CC----c----HHHHHHHHHHhhcCCcEEE
Q 020435          206 MTDGGADYCFEC-VG----L----ASLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       206 ~~~~g~d~v~d~-~g----~----~~~~~~~~~~l~~~~G~~v  239 (326)
                      +..+.+|+|+.. .+    .    ...+...-+.|+|+ |.++
T Consensus       101 ~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg-G~ii  142 (328)
T d1g6q1_         101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG-GLIF  142 (328)
T ss_dssp             CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             CcccceeEEEEEecceeeccchhHHHHHHHHHhccCCC-eEEE
Confidence            112389999752 22    1    22344455789998 8875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.78  Score=33.45  Aligned_cols=95  Identities=6%  Similarity=-0.033  Sum_probs=59.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHH-H---HHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-I---GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~-~---~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      -+.|+|.|.|.+|..+++.++..|. +|++++.++++.. .   ++..|.. ++..+.    .-.+.+++.--..+|.++
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~-vi~Gd~----~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNAD-VIPGDS----NDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCE-EEESCT----TSHHHHHHHTTTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcE-EEEccC----cchHHHHHhccccCCEEE
Confidence            3579999999999999999999998 8888887776432 2   2334553 443333    113334444333889999


Q ss_pred             EcCCcHHHHH---HHHHHhhcCCcEEEEe
Q 020435          216 ECVGLASLVQ---EAYACCRKGWGKTIVL  241 (326)
Q Consensus       216 d~~g~~~~~~---~~~~~l~~~~G~~v~~  241 (326)
                      -+.+....-.   ...+-+.+. -+++..
T Consensus        77 ~~~~~d~~n~~~~~~~r~~~~~-~~iia~  104 (153)
T d1id1a_          77 ALSDNDADNAFVVLSAKDMSSD-VKTVLA  104 (153)
T ss_dssp             ECSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred             EccccHHHHHHHHHHHHHhCCC-CceEEE
Confidence            8887754211   223345554 555544

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.04  E-value=0.085  Score=37.62  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .+++++|+|+|.+|+=+++++..+|. +|..+.+.+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            35799999999999999999999999 999998654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.03  E-value=0.06  Score=44.76  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=32.8

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      ....+.+|+|+|+|..|+.++..+...|. +|++++.++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            34566799999999999999999998998 999998654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.01  E-value=0.069  Score=42.62  Aligned_cols=39  Identities=21%  Similarity=0.216  Sum_probs=33.9

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  175 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~  175 (326)
                      ....+++|+|+|+|+.|+.++..++..|. +|++++.+++
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence            34568899999999999999999999999 9999986553

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.088  Score=37.12  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .+++|+|+|+|.+|+=+++.++.+|. +|..+.+.+
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            35799999999999999999999999 999998764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.93  E-value=0.059  Score=41.64  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=34.4

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  180 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~  180 (326)
                      .+|.|+|+|.+|...+.++...|. +|+..+++++..+..
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence            579999999999999988888999 999999999876654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.92  E-value=0.089  Score=37.30  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .+++++|+|+|.+|+=+++.++.+|. +|..+.+.+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            46899999999999999999999999 899988654

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.83  E-value=0.11  Score=43.54  Aligned_cols=33  Identities=24%  Similarity=0.166  Sum_probs=29.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .++||+|+ |-+|..++..+...|. +|+++++..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            57999997 9999999999999999 999999743

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.70  E-value=0.1  Score=37.10  Aligned_cols=38  Identities=32%  Similarity=0.441  Sum_probs=33.5

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  175 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~  175 (326)
                      ++++++++|+|+|.+|.=++..++..|. +|..+.+++.
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc
Confidence            4678999999999999999999999998 9999987653

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=92.63  E-value=0.22  Score=41.72  Aligned_cols=99  Identities=14%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             cccCCCCEEEEEcc--CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh------cCCc--EEEcCCCCCCccHHHHHH
Q 020435          135 ANVEVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR------FGVT--EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       135 ~~~~~~~~vlI~Ga--g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~------~g~~--~vi~~~~~~~~~~~~~i~  204 (326)
                      ..+.+|++||-..+  |+.++.   + ...|+..|+.++.++...+++++      ++.+  .++..      +..+.++
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl~---a-a~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~------d~~~~l~  209 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSVA---A-AMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM------DVFDYFK  209 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHHH---H-HHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES------CHHHHHH
T ss_pred             HHhhCCCceeecCCCCcHHHHH---H-HhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEc------cHHHHHH
Confidence            44668999998854  555543   2 23577689999999998888763      2222  23433      3334444


Q ss_pred             Hhc-CC-CccEEE-EcCCc--------------HHHHHHHHHHhhcCCcEEEEeccC
Q 020435          205 DMT-DG-GADYCF-ECVGL--------------ASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       205 ~~~-~~-g~d~v~-d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ... .+ .||+|| |...-              ...+..+.++|+++ |.++.+..+
T Consensus       210 ~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~scs  265 (317)
T d2b78a2         210 YARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTNA  265 (317)
T ss_dssp             HHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred             HHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence            332 23 899998 53321              12466788899998 988877543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=92.61  E-value=0.21  Score=41.05  Aligned_cols=96  Identities=18%  Similarity=0.259  Sum_probs=65.0

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHh----cCCc-EEEcCCCCCCccHHHHHHHhc
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~--g~~~V~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      .++.++.+||=+|+|. |..+..+++..  +. +|++++.+++..+.+++    .+.. ..+..+.   .++     . .
T Consensus        23 ~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~---~~~-----~-~   91 (281)
T d2gh1a1          23 WKITKPVHIVDYGCGY-GYLGLVLMPLLPEGS-KYTGIDSGETLLAEARELFRLLPYDSEFLEGDA---TEI-----E-L   91 (281)
T ss_dssp             SCCCSCCEEEEETCTT-THHHHHHTTTSCTTC-EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCT---TTC-----C-C
T ss_pred             hccCCcCEEEEecCcC-CHHHHHHHHhCCCCC-EEEEEecchhHhhhhhccccccccccccccccc---ccc-----c-c
Confidence            3567889999999875 78888888865  45 89999999988887764    3332 1222111   111     0 1


Q ss_pred             CCCccEEEEcCC-----c-HHHHHHHHHHhhcCCcEEEEec
Q 020435          208 DGGADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       208 ~~g~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  242 (326)
                      ++.+|+|+....     + ...++.+.+.|+++ |.++...
T Consensus        92 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~lii~~  131 (281)
T d2gh1a1          92 NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKG-GKIICFE  131 (281)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcC-cEEEEEE
Confidence            237999985432     2 34578899999998 9988764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.61  E-value=0.53  Score=35.64  Aligned_cols=82  Identities=13%  Similarity=0.019  Sum_probs=51.0

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhH--HHHHHhcC------C---cEEEcCCCCCCccHHHHHHHhcCC
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFG------V---TEFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~--~~~~~~~g------~---~~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      .+|.|+|+|+.|.+++..+...|. +|....+..+.  .+.+.+..      .   ...+...    .++.+.+.     
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~-----   70 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP----EQLEKCLE-----   70 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECG----GGHHHHHT-----
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhcccccccc----ccHHHHHh-----
Confidence            378999999999999998888887 89998874332  33332211      0   0011111    22333222     


Q ss_pred             CccEEEEcCCcHHHHHHHHHHhhc
Q 020435          210 GADYCFECVGLASLVQEAYACCRK  233 (326)
Q Consensus       210 g~d~v~d~~g~~~~~~~~~~~l~~  233 (326)
                      .+|+|+-++.... +...++.+.+
T Consensus        71 ~ad~Ii~avps~~-~~~~~~~l~~   93 (180)
T d1txga2          71 NAEVVLLGVSTDG-VLPVMSRILP   93 (180)
T ss_dssp             TCSEEEECSCGGG-HHHHHHHHTT
T ss_pred             ccchhhcccchhh-hHHHHHhhcc
Confidence            5899999999877 5555554444

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=92.56  E-value=0.11  Score=42.11  Aligned_cols=101  Identities=13%  Similarity=-0.065  Sum_probs=66.0

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhc-CCcEEEcCCCCCCccHHHHHHHhc--CC
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTEFVNSKNCGDKSVSQIIIDMT--DG  209 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~i~~~~--~~  209 (326)
                      +......+.+||=.|+|. |..+..+++.... .|++++.+++..+.+++. .....++...   .++    .++.  ++
T Consensus        87 ~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~---~d~----~~~~~~~~  157 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGI-GRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFIL---ASM----ETATLPPN  157 (254)
T ss_dssp             HTSTTCCCSEEEEETCTT-THHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEE---SCG----GGCCCCSS
T ss_pred             hhCCCCCCCeEEEecccC-ChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEE---ccc----cccccCCC
Confidence            444556778999999876 7777888876665 899999999988888753 2111222111   111    1222  23


Q ss_pred             CccEEEEcCCc-----H---HHHHHHHHHhhcCCcEEEEecc
Q 020435          210 GADYCFECVGL-----A---SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       210 g~d~v~d~~g~-----~---~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+|+|+..-.-     +   ..+..+.+.|+++ |.++....
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg-G~iii~e~  198 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN-GYIFFKEN  198 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCC-cEEEEEec
Confidence            79999853322     2   3477889999998 99887643

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.53  E-value=0.061  Score=42.96  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=31.4

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  177 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~  177 (326)
                      +++||+|+ ++||.+.++.+...|+ +|+.+++++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~   38 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY-RVVVLDLRREGE   38 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcccc
Confidence            57899987 8999999999999999 999999876643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=92.49  E-value=0.22  Score=41.90  Aligned_cols=75  Identities=13%  Similarity=0.192  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHhc----CCcEEE-cCCCCCCccHHHHHHHhcCC-C
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRF----GVTEFV-NSKNCGDKSVSQIIIDMTDG-G  210 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~-~~~~----g~~~vi-~~~~~~~~~~~~~i~~~~~~-g  210 (326)
                      .+.+|||+|+ |-+|..+++.+...|. +|+++++.+.+... ++..    +...+. |-.+   .+   .+.+.... .
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d---~~---~l~~~~~~~~   79 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD---QN---KLLESIREFQ   79 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC---HH---HHHHHHHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEEEeeccC---hH---hhhhhhhhch
Confidence            5799999987 9999999999999999 99999987654321 2211    222221 2112   22   23333333 7


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+|+.+++.
T Consensus        80 ~~~v~~~aa~   89 (356)
T d1rkxa_          80 PEIVFHMAAQ   89 (356)
T ss_dssp             CSEEEECCSC
T ss_pred             hhhhhhhhcc
Confidence            8999988774

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.49  E-value=0.49  Score=31.41  Aligned_cols=66  Identities=18%  Similarity=0.316  Sum_probs=45.4

Q ss_pred             CEEEEEccCHHHHH-HHHHHHHcCCCEEEEEcCChh-HHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          141 STVVIFGLGSIGLA-VAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       141 ~~vlI~Gag~~G~~-a~~la~~~g~~~V~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+|-++|-|++|.. ++++++..|. .|.+.+..+. ..+.+++.|+.....++.   +++         .++|+|+-+.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~---~~i---------~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHSA---DNW---------YDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCCT---TSC---------CCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeecc---ccc---------CCCCEEEEec
Confidence            46778888777874 4688889999 9999998763 445688899864433333   222         2578887554


Q ss_pred             C
Q 020435          219 G  219 (326)
Q Consensus       219 g  219 (326)
                      .
T Consensus        69 A   69 (89)
T d1j6ua1          69 A   69 (89)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.47  E-value=0.15  Score=36.25  Aligned_cols=39  Identities=26%  Similarity=0.421  Sum_probs=33.0

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      ..-..+.+|+|+|+|.+|+-+++.+...|. +|..+.+.+
T Consensus        25 ~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          25 TVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             hhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            333467899999999999999999999999 899997653

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=92.37  E-value=1.6  Score=32.71  Aligned_cols=137  Identities=13%  Similarity=0.049  Sum_probs=75.5

Q ss_pred             EEEEEccCHHHHH-HHHHHHHcCC-CEEEEE-cCChhHHHH-HHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          142 TVVIFGLGSIGLA-VAEGARLCGA-TRIIGV-DVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       142 ~vlI~Gag~~G~~-a~~la~~~g~-~~V~~~-~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      +|.|+|.|.+|.- .+...+..+- .+++++ ++++++.+. .++++...+.       .++.+.+..   ..+|+|+-|
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~-------~~~~ell~~---~~id~v~I~   74 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF-------DSYEELLES---GLVDAVDLT   74 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE-------SCHHHHHHS---SCCSEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee-------eeeeccccc---cccceeecc
Confidence            6889999999864 4566665432 156644 566666554 4557765554       234443332   379999988


Q ss_pred             CCcHHHHHHHHHHhhcCCcEEEEeccCCCCCcccc-cHHHHHh-cCCE-EEeeeccCCCCCCCHHHHHHHHhCCCC
Q 020435          218 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL-SSFEVLH-SGKI-LMGSLFGGLKAKSDIPILLKRYMDKEL  290 (326)
Q Consensus       218 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~~~-~~~~-i~~~~~~~~~~~~~~~~~~~l~~~g~~  290 (326)
                      .........+..++..  |.=|++.-+........ .+..+.. ++.. ..++..........+.++.+++.+|++
T Consensus        75 tp~~~h~~~~~~al~~--gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~i  148 (181)
T d1zh8a1          75 LPVELNLPFIEKALRK--GVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKP  148 (181)
T ss_dssp             CCGGGHHHHHHHHHHT--TCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred             cccccccccccccccc--chhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCC
Confidence            8777657778878877  46666654321111111 1111222 2332 233311100012357788899999865

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.21  Score=35.63  Aligned_cols=88  Identities=16%  Similarity=0.194  Sum_probs=55.2

Q ss_pred             CCCEEEEEccCHH-----------HHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGLGSI-----------GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Gag~~-----------G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      .-++|||+|+|+.           +..++..+|..|. +++.+..+++....-.+. +|+++-..=     ..+.+.+..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~-aD~lYfePl-----t~e~v~~Ii   78 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEM-ADATYIEPI-----HWEVVRKII   78 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGG-SSEEECSCC-----CHHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhh-cceeeeecC-----CHHHHHHHH
Confidence            4579999998753           3444555566799 899999888775433222 345542211     123333333


Q ss_pred             CC-CccEEEEcCCcHHHHHHHHHHhhc
Q 020435          208 DG-GADYCFECVGLASLVQEAYACCRK  233 (326)
Q Consensus       208 ~~-g~d~v~d~~g~~~~~~~~~~~l~~  233 (326)
                      .. ..|.|+-..|+...++.+.++...
T Consensus        79 ~~E~pd~il~~~GGQtalnla~~L~~~  105 (127)
T d1a9xa3          79 EKERPDAVLPTMGGQTALNCALELERQ  105 (127)
T ss_dssp             HHHCCSEEECSSSHHHHHHHHHHHHHT
T ss_pred             HHhCcCCeEEEeeeehHhHHHHHHHHc
Confidence            33 899999999998877767666544

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=92.31  E-value=0.5  Score=35.18  Aligned_cols=132  Identities=11%  Similarity=0.047  Sum_probs=75.2

Q ss_pred             EEEEEccCHHHHH-HHHHHHHc-CCCEEEEEcCChhHHHHH-HhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          142 TVVIFGLGSIGLA-VAEGARLC-GATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       142 ~vlI~Gag~~G~~-a~~la~~~-g~~~V~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      +|.|+|+|.+|.- .....+.. +. ++++.+.++++.+.+ ++++...+++.       +.+    +....+|+|+-|.
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~----ll~~~iD~V~I~t   70 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTD-------YRD----VLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSS-------TTG----GGGGCCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhccccccccc-------HHH----hcccccceecccc
Confidence            6889999999854 45555554 55 777777787776664 45776544322       211    1112699999888


Q ss_pred             CcHHHHHHHHHHhhcCCcEEEEeccCCCCCcc-cccHHHHHh-cCCE-EEeeeccCCCCCCCHHHHHHHHhCCCCC
Q 020435          219 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSFEVLH-SGKI-LMGSLFGGLKAKSDIPILLKRYMDKELE  291 (326)
Q Consensus       219 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~-~~~~-i~~~~~~~~~~~~~~~~~~~l~~~g~~~  291 (326)
                      ......+.+..++..+  .=+++.-+...... ...+..... ++.. +.++.    .....+.++.+.+..|++.
T Consensus        71 p~~~H~~~~~~al~~g--k~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~~----r~~~~~~~~~~~~~~G~ig  140 (167)
T d1xeaa1          71 ATDVHSTLAAFFLHLG--IPTFVDKPLAASAQECENLYELAEKHHQPLYVGFN----GFDAMVQDWLQVAAAGKLP  140 (167)
T ss_dssp             CGGGHHHHHHHHHHTT--CCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECG----THHHHHHHHHHHHHHTCCC
T ss_pred             cccccccccccccccc--cccccCCCCcCCHHHHHHHHHHHHHcCCEEEEEeC----cCCHHHHHHHHHhhcCCCC
Confidence            8877688888888875  54666432211111 111112211 2332 23321    1123466777888888653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.20  E-value=0.11  Score=36.39  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=31.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .+++++|+|+|.+|.-+++.++.+|. +|..+.+.+
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            35899999999999999999999999 899998654

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.19  E-value=0.37  Score=35.44  Aligned_cols=90  Identities=11%  Similarity=0.059  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc--CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHHHHHHHhcCC
Q 020435          139 VGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       139 ~~~~vlI~Ga--g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      .|.+||=.++  |.+|+.+    ...|+.+|+.++.+++..+.+++    ++..   .++.      .+..+.+.. ..+
T Consensus        14 ~g~~vlDl~~GtG~~~iea----~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~------~D~~~~l~~-~~~   82 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEA----VSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK------MEAERAIDC-LTG   82 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHH----HHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC------SCHHHHHHH-BCS
T ss_pred             CCCeEEEcCCccCHHHHHH----HHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc------ccccccccc-ccc
Confidence            5888888864  5666532    23677799999999988776653    4532   3343      233444433 344


Q ss_pred             CccEEE-EcCCcHHHHHHHHHH------hhcCCcEEEE
Q 020435          210 GADYCF-ECVGLASLVQEAYAC------CRKGWGKTIV  240 (326)
Q Consensus       210 g~d~v~-d~~g~~~~~~~~~~~------l~~~~G~~v~  240 (326)
                      .+|+|| |..-........+..      |+++ |.++.
T Consensus        83 ~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~-g~iii  119 (152)
T d2esra1          83 RFDLVFLDPPYAKETIVATIEALAAKNLLSEQ-VMVVC  119 (152)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTCEEEE-EEEEE
T ss_pred             ccceeEechhhccchHHHHHHHHHHCCCcCCC-eEEEE
Confidence            899998 654333323333333      4555 55543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.17  E-value=0.3  Score=39.88  Aligned_cols=34  Identities=24%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      -.+|||+|+ |-+|..++..+...|. +|++++|++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCC
Confidence            457999997 9999999998888998 899998864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.13  Score=36.65  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=31.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      +++++|+|+|.+|+=++..++.+|. +|..+.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            4799999999999999999999999 999999764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.05  E-value=0.37  Score=40.43  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=32.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  177 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~  177 (326)
                      +-.+|||+|+ |.+|..++..+...|. +|+++.|+..+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcchh
Confidence            4579999997 9999999999999998 899999876543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.04  E-value=0.17  Score=38.45  Aligned_cols=41  Identities=29%  Similarity=0.204  Sum_probs=33.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  180 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~  180 (326)
                      -++.+|||.|+|+++.+++..+...  ++++++.|+.++.+.+
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~--~~i~I~nR~~~ka~~l   56 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKD--NNIIIANRTVEKAEAL   56 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSS--SEEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHccc--cceeeehhhhhHHHHH
Confidence            4688999999999999887666443  3899999999887754

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=92.04  E-value=0.88  Score=37.56  Aligned_cols=100  Identities=18%  Similarity=0.168  Sum_probs=62.9

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHhcCCcEEEcCCCC----------------
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSKNC----------------  194 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~--~~~~~~~~~~~g~~~vi~~~~~----------------  194 (326)
                      +...+.++++|+...+|+.|++++..++..|..-++.+..  ++.+.+.++.+|++.+......                
T Consensus        54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~  133 (310)
T d1y7la1          54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD  133 (310)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred             HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh
Confidence            3344567777666677999999999999999843333332  4456677788888655422110                


Q ss_pred             ----------CCc--------cHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhh
Q 020435          195 ----------GDK--------SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR  232 (326)
Q Consensus       195 ----------~~~--------~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~  232 (326)
                                .+.        ....++.+..++.+|.++.++|+...+.-....++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk  189 (310)
T d1y7la1         134 PSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIK  189 (310)
T ss_dssp             TTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHH
T ss_pred             cCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHH
Confidence                      000        12224444455578999988888765666666664

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.01  E-value=0.12  Score=36.99  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=31.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      +.+++++|+|+|.+|+=+++..+.+|. +|..+.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            346899999999999999999999999 999998653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.97  E-value=0.088  Score=37.57  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=32.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  175 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~  175 (326)
                      +.+++++|+|+|.+|+=++++.+.+|. +|.++.+++.
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~   59 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE   59 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccc
Confidence            346899999999999999999999999 9999987643

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.97  E-value=0.24  Score=38.85  Aligned_cols=97  Identities=11%  Similarity=0.032  Sum_probs=63.4

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC----Cc--EEEcCCCCCCccHHHHHHHhcCC
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----VT--EFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g----~~--~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      ...++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++.-    ..  ..+..+-   .++     ....+
T Consensus        57 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~---~~~-----~~~~~  126 (222)
T d2ex4a1          57 NKTGTSCALDCGAGI-GRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL---QDF-----TPEPD  126 (222)
T ss_dssp             -CCCCSEEEEETCTT-THHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG---GGC-----CCCSS
T ss_pred             CCCCCCEEEEeccCC-CHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccc---ccc-----ccccc
Confidence            456678999999876 7777777766665 8999999999988876532    21  2222111   111     01123


Q ss_pred             CccEEEEc-----CCcH---HHHHHHHHHhhcCCcEEEEecc
Q 020435          210 GADYCFEC-----VGLA---SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       210 g~d~v~d~-----~g~~---~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+|+|+..     ...+   ..+..+.+.|+++ |.++....
T Consensus       127 ~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~-G~~~i~~~  167 (222)
T d2ex4a1         127 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKDN  167 (222)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccccccccccchhhhhhhHHHHHHHhcCCc-ceEEEEEc
Confidence            89999853     2222   3577889999998 99988754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=91.92  E-value=0.77  Score=34.39  Aligned_cols=95  Identities=20%  Similarity=0.139  Sum_probs=55.4

Q ss_pred             ccCCCCEEEEEcc--CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC-cEEEcCCCCCCccHHHHHHHhcC
Q 020435          136 NVEVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       136 ~~~~~~~vlI~Ga--g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      ++..|.+||=.++  |.+|.   . |...|+ +|+.++.+++..+.+++    ++. +.+...+.   +.+... .....
T Consensus        38 ~~~~g~~vLDl~~G~G~~~i---~-a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~---d~~~~~-~~~~~  108 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSGAVGL---E-AASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV---EVFLPE-AKAQG  108 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHHH---H-HHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH---HHHHHH-HHHTT
T ss_pred             cccCCCeEEEeccccchhhh---h-hhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeeh---hccccc-ccccC
Confidence            4577889998864  56554   3 334588 89999999998887653    553 34554433   222222 12233


Q ss_pred             CCccEEE-EcC---CcHHHHHHHHH--HhhcCCcEEEE
Q 020435          209 GGADYCF-ECV---GLASLVQEAYA--CCRKGWGKTIV  240 (326)
Q Consensus       209 ~g~d~v~-d~~---g~~~~~~~~~~--~l~~~~G~~v~  240 (326)
                      +.+|+|| |..   +-...+..+..  .++++ |.++.
T Consensus       109 ~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~-g~ivi  145 (171)
T d1ws6a1         109 ERFTVAFMAPPYAMDLAALFGELLASGLVEAG-GLYVL  145 (171)
T ss_dssp             CCEEEEEECCCTTSCTTHHHHHHHHHTCEEEE-EEEEE
T ss_pred             CccceeEEccccccCHHHHHHHHHHcCCcCCC-eEEEE
Confidence            3899998 532   22232444332  47776 66554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=91.86  E-value=0.11  Score=41.30  Aligned_cols=35  Identities=26%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ++-.+|+|+|+|..|++++..+...|. +|.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            345689999999999999999999999 99999864

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.83  E-value=0.32  Score=40.82  Aligned_cols=38  Identities=16%  Similarity=0.014  Sum_probs=30.5

Q ss_pred             CCEEEEEcc---CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 020435          140 GSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKFE  178 (326)
Q Consensus       140 ~~~vlI~Ga---g~~G~~a~~la~~~g~~~V~~~~~~~~~~~  178 (326)
                      ++..||+|+   .+||.++++.+...|+ +|+.+.++.....
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~~~~~~   42 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNI   42 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECGGGHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCchhhhh
Confidence            467788884   3899999999999999 8998887665443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=91.82  E-value=0.084  Score=42.67  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=60.3

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EE--EcCCCCCCccHHHHHHHhcCC
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF--VNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~v--i~~~~~~~~~~~~~i~~~~~~  209 (326)
                      ++++++||=.|+|. |..+..+++.-.. +|++++.|++..+.+++    .+.. .+  +..+.+ ...+      ..++
T Consensus        22 ~~~~~~VLDlGCG~-G~~~~~~~~~~~~-~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~-~~~~------~~~~   92 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK-GGDLLKYERAGIG-EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-GRHM------DLGK   92 (252)
T ss_dssp             CCTTCEEEEETCTT-TTTHHHHHHHTCS-EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT-TSCC------CCSS
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchh-hhcc------cccc
Confidence            56899999999876 6666777776444 89999999998888753    3321 22  111110 0000      0122


Q ss_pred             CccEEEEcCCcH----------HHHHHHHHHhhcCCcEEEEe
Q 020435          210 GADYCFECVGLA----------SLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       210 g~d~v~d~~g~~----------~~~~~~~~~l~~~~G~~v~~  241 (326)
                      .+|+|+....-.          ..+..+.+.|+++ |.++..
T Consensus        93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g-G~~i~~  133 (252)
T d1ri5a_          93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG-GYFIMT  133 (252)
T ss_dssp             CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred             cceEEEEcceeeecCCCHHHHHHHHHHHhceeCCC-CEEEEE
Confidence            799998643321          2466778899998 998765

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.80  E-value=0.09  Score=41.05  Aligned_cols=86  Identities=20%  Similarity=0.189  Sum_probs=54.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+.+|.|+|.|.+|..++++++.+|+ +|++.++...+...   ...    ..     .++.+.+.+     .|+|.-+.
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~---~~~----~~-----~~l~~l~~~-----~D~v~~~~  105 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMKGDH---PDF----DY-----VSLEDLFKQ-----SDVIDLHV  105 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSSCC---TTC----EE-----CCHHHHHHH-----CSEEEECC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCccchhhh---cch----hH-----HHHHHHHHh-----cccceeee
Confidence            46899999999999999999999999 99999875432100   000    11     223333333     67776544


Q ss_pred             C-cHH----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 G-LAS----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g-~~~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      . .+.    +-...+..|+++ ..+|-++.
T Consensus       106 plt~~T~~li~~~~l~~mk~~-a~lIN~aR  134 (199)
T d1dxya1         106 PGIEQNTHIINEAAFNLMKPG-AIVINTAR  134 (199)
T ss_dssp             CCCGGGTTSBCHHHHHHSCTT-EEEEECSC
T ss_pred             cccccccccccHHHhhccCCc-eEEEeccc
Confidence            3 222    123566777776 66666653

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.73  E-value=0.063  Score=44.10  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  175 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~  175 (326)
                      .|+|+|+|+.|++++..++..|. +|.++++.++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            58999999999999999999999 9999997653

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.72  E-value=0.52  Score=40.34  Aligned_cols=98  Identities=14%  Similarity=0.120  Sum_probs=64.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCcEE--------------EcCCCCCCccHHH
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--------------VNSKNCGDKSVSQ  201 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~~v--------------i~~~~~~~~~~~~  201 (326)
                      +.+| +.+-+++|.-.+++|+..|+.+|++.+.+++..+.+++    .+....              +....   .+.. 
T Consensus        46 ~~~v-LD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~---~Da~-  120 (375)
T d2dula1          46 PKIV-LDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINH---DDAN-  120 (375)
T ss_dssp             CSEE-EESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEE---SCHH-
T ss_pred             CCEE-EEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeeh---hhhh-
Confidence            4443 33446678889999998888799999999999988864    122110              11111   1222 


Q ss_pred             HHHHhcCCCccEE-EEcCCc-HHHHHHHHHHhhcCCcEEEEecc
Q 020435          202 IIIDMTDGGADYC-FECVGL-ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       202 ~i~~~~~~g~d~v-~d~~g~-~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .+....++.+|+| +|..|+ .+.++.++++++.+ |-+..+..
T Consensus       121 ~~~~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~-Gll~vTaT  163 (375)
T d2dula1         121 RLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRR-GILGVTAT  163 (375)
T ss_dssp             HHHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             hhhHhhcCcCCcccCCCCCCcHHHHHHHHHHhccC-CEEEEEec
Confidence            2222233389988 599998 44578999999997 88877765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.71  E-value=0.079  Score=42.12  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=28.6

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      +|+|+|+|..|+.++..++..|..+|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            699999999999999999989964699998754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.71  E-value=0.16  Score=36.65  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=32.9

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      ++++.+|+|+|+|.+|.=++..++..|. +|..+.+.+
T Consensus        32 ~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~   68 (133)
T d1q1ra2          32 LIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA   68 (133)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence            4568899999999999999999999999 999998764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.69  E-value=0.26  Score=41.69  Aligned_cols=74  Identities=19%  Similarity=0.203  Sum_probs=46.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      ...+|||+|+ |-+|..++..+...|. +|+++++....... ...........+-   .+.. .+.+.. .++|.|+.+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~-~~~~~~~~~~~D~---~~~~-~~~~~~-~~~d~Vih~   86 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMT-EDMFCDEFHLVDL---RVME-NCLKVT-EGVDHVFNL   86 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSC-GGGTCSEEEECCT---TSHH-HHHHHH-TTCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccchh-hhcccCcEEEeec---hhHH-HHHHHh-hcCCeEeec
Confidence            5789999987 9999999999999998 99999764433211 1122112222222   2222 222222 279999987


Q ss_pred             CC
Q 020435          218 VG  219 (326)
Q Consensus       218 ~g  219 (326)
                      ++
T Consensus        87 a~   88 (363)
T d2c5aa1          87 AA   88 (363)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.69  E-value=0.57  Score=31.52  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=47.9

Q ss_pred             cCCCCEEEEEccCHHHHHH-HHHHHHcCCCEEEEEcCChh-HHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEE
Q 020435          137 VEVGSTVVIFGLGSIGLAV-AEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  214 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a-~~la~~~g~~~V~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v  214 (326)
                      .+...+|.++|-|++|..+ +++++..|. .|.+.+.... ..+.+++.|+.....++.   .+.         .++|+|
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~---~~i---------~~~d~v   71 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAE---EHI---------EGASVV   71 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCG---GGG---------TTCSEE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCcc---ccC---------CCCCEE
Confidence            4567899999987778666 788899999 9999997543 344566788854443333   222         157888


Q ss_pred             EEcCC
Q 020435          215 FECVG  219 (326)
Q Consensus       215 ~d~~g  219 (326)
                      +-+..
T Consensus        72 V~S~A   76 (96)
T d1p3da1          72 VVSSA   76 (96)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            75444

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.67  E-value=0.1  Score=42.17  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      -+|+|+|+|..|++++.+++..|..+|.++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            3799999999999999999999965788888754

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.025  Score=47.57  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=27.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      .+|||+|+ |-+|..++..+...|. +|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            58999997 9999999999988898 8999874

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.63  E-value=0.31  Score=40.99  Aligned_cols=73  Identities=15%  Similarity=0.155  Sum_probs=44.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh----hHHH---HHHhcCCcEEE-cCCCCCCccHHHHHHHhcCC-C
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFE---IGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDG-G  210 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~----~~~~---~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~-g  210 (326)
                      +.|||+|+ |-+|..++..+...|. +|+++++..    +...   ....-+.+.+. |-.+      .+.+.+.... +
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d------~~~l~~~~~~~~   74 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD------RKGLEKVFKEYK   74 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTC------HHHHHHHHHHSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCC------HHHHHHHHhccC
Confidence            57999987 9999999999988898 899986422    1112   22222333222 2222      2233333333 8


Q ss_pred             ccEEEEcCCc
Q 020435          211 ADYCFECVGL  220 (326)
Q Consensus       211 ~d~v~d~~g~  220 (326)
                      +|+||.+++.
T Consensus        75 ~d~VihlAa~   84 (347)
T d1z45a2          75 IDSVIHFAGL   84 (347)
T ss_dssp             CCEEEECCSC
T ss_pred             CCEEEEcccc
Confidence            9999998764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=91.55  E-value=0.13  Score=40.76  Aligned_cols=94  Identities=11%  Similarity=0.026  Sum_probs=58.4

Q ss_pred             cccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc--EEEcCCCCCCccHHHHHHHhcCCCcc
Q 020435          135 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGAD  212 (326)
Q Consensus       135 ~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~g~d  212 (326)
                      .+..++.+||-+|+|. |..+..+++ .|. +|++++.+++..+.+++...+  .++..+-   .++      ..++.+|
T Consensus        16 ~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~---~~~------~~~~~fD   83 (225)
T d2p7ia1          16 TPFFRPGNLLELGSFK-GDFTSRLQE-HFN-DITCVEASEEAISHAQGRLKDGITYIHSRF---EDA------QLPRRYD   83 (225)
T ss_dssp             GGGCCSSCEEEESCTT-SHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCG---GGC------CCSSCEE
T ss_pred             hhhCCCCcEEEEeCCC-cHHHHHHHH-cCC-eEEEEeCcHHHhhhhhcccccccccccccc---ccc------ccccccc
Confidence            3445677999999866 666655554 477 899999999999988764322  2232221   111      1123899


Q ss_pred             EEEEcC-----CcHH-HHHHHH-HHhhcCCcEEEEe
Q 020435          213 YCFECV-----GLAS-LVQEAY-ACCRKGWGKTIVL  241 (326)
Q Consensus       213 ~v~d~~-----g~~~-~~~~~~-~~l~~~~G~~v~~  241 (326)
                      +|+..-     .++. .+..+. ++|+++ |.++..
T Consensus        84 ~I~~~~vleh~~d~~~~l~~i~~~~Lk~g-G~l~i~  118 (225)
T d2p7ia1          84 NIVLTHVLEHIDDPVALLKRINDDWLAEG-GRLFLV  118 (225)
T ss_dssp             EEEEESCGGGCSSHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred             cccccceeEecCCHHHHHHHHHHHhcCCC-ceEEEE
Confidence            997422     2232 244555 578997 888765

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.53  E-value=0.13  Score=39.42  Aligned_cols=83  Identities=20%  Similarity=0.266  Sum_probs=55.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .|.+|.|+|.|.+|..++++++.+|+ +|++.++++...      .. ...       .++.+.+.     ..|+|+-+.
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~~------~~-~~~-------~~l~ell~-----~sDiv~~~~  100 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEG------PW-RFT-------NSLEEALR-----EARAAVCAL  100 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCCS------SS-CCB-------SCSHHHHT-----TCSEEEECC
T ss_pred             cCceEEEeccccccccceeeeecccc-cccccccccccc------ce-eee-------echhhhhh-----ccchhhccc
Confidence            47899999999999999999999999 999998764321      11 110       12322222     478887655


Q ss_pred             Cc-HH----HHHHHHHHhhcCCcEEEEec
Q 020435          219 GL-AS----LVQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       219 g~-~~----~~~~~~~~l~~~~G~~v~~g  242 (326)
                      .- +.    +-...++.++++ ..+|.++
T Consensus       101 pl~~~t~~li~~~~l~~mk~~-ailIN~~  128 (181)
T d1qp8a1         101 PLNKHTRGLVKYQHLALMAED-AVFVNVG  128 (181)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred             ccccccccccccceeeecccc-ceEEecc
Confidence            42 11    124567777887 7777765

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.12  Score=42.81  Aligned_cols=35  Identities=26%  Similarity=0.353  Sum_probs=31.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ++..+|+|+|+|..|+.++..+...|. +|.++..+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            456789999999999999999999999 99999864

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=91.48  E-value=0.051  Score=40.34  Aligned_cols=83  Identities=7%  Similarity=-0.131  Sum_probs=50.7

Q ss_pred             EEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcHHH
Q 020435          144 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL  223 (326)
Q Consensus       144 lI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~~~  223 (326)
                      -++|+|.+|..+++.++..+. .+.+..|++++.+.+.+.+.....+..+    ..         ...|+||=|+.... 
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~-~~~v~~R~~~~~~~l~~~~~~~~~~~~~----~~---------~~~DiVil~v~d~~-   67 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYE-IGYILSRSIDRARNLAEVYGGKAATLEK----HP---------ELNGVVFVIVPDRY-   67 (153)
T ss_dssp             EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCC----CC---------C---CEEECSCTTT-
T ss_pred             EEEeCcHHHHHHHHHHHhCCC-EEEEEeCChhhhcchhhcccccccchhh----hh---------ccCcEEEEeccchh-
Confidence            367999999998876655333 4457889999988877655433322222    00         15899999998877 


Q ss_pred             HHHHHHHhhcCCcE-EEEec
Q 020435          224 VQEAYACCRKGWGK-TIVLG  242 (326)
Q Consensus       224 ~~~~~~~l~~~~G~-~v~~g  242 (326)
                      +......+... ++ ++.++
T Consensus        68 i~~v~~~l~~~-~~ivi~~s   86 (153)
T d2i76a2          68 IKTVANHLNLG-DAVLVHCS   86 (153)
T ss_dssp             HHHHHTTTCCS-SCCEEECC
T ss_pred             hhHHHhhhccc-ceeeeecc
Confidence            77777777654 44 44443

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.36  E-value=0.32  Score=39.36  Aligned_cols=35  Identities=26%  Similarity=0.245  Sum_probs=30.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  175 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~  175 (326)
                      -.+|||+|+ |-+|..++..+...|. +|++++++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCc
Confidence            468999998 9999999999988998 8999998654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.21  E-value=0.16  Score=40.03  Aligned_cols=104  Identities=20%  Similarity=0.187  Sum_probs=59.7

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHH----hcCCcEEEcCCCCCCccHHHHHHH--
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIID--  205 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~--  205 (326)
                      ...+..+..+||-+|.+. |..++.+|++++. .+|+.++.+++..+.++    ..|...-+....   .+..+.+.+  
T Consensus        50 ~lv~~~kpk~ILEiGt~~-G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~---Gd~~e~l~~l~  125 (214)
T d2cl5a1          50 AVIREYSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILN---GASQDLIPQLK  125 (214)
T ss_dssp             HHHHHHCCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHGGGHH
T ss_pred             HHHHhhCCCEEEEEccCc-hhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeee---ccccccccchh
Confidence            334455678999998654 5666778877532 39999999988777664    345322111111   233333333  


Q ss_pred             -hcCC-CccEEE-EcCCcHHH----HHHHHHHhhcCCcEEEEec
Q 020435          206 -MTDG-GADYCF-ECVGLASL----VQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       206 -~~~~-g~d~v~-d~~g~~~~----~~~~~~~l~~~~G~~v~~g  242 (326)
                       .... .+|.|| |+.-....    +...++.|+++ |. +.+.
T Consensus       126 ~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpG-Gv-Iv~D  167 (214)
T d2cl5a1         126 KKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKG-TV-LLAD  167 (214)
T ss_dssp             HHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEE-EE-EEES
T ss_pred             hcccccccceeeecccccccccHHHHHHHhCccCCC-cE-EEEe
Confidence             2233 799997 64444321    33445668896 65 4443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.21  E-value=0.46  Score=35.76  Aligned_cols=43  Identities=21%  Similarity=0.157  Sum_probs=37.1

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  184 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g  184 (326)
                      .+|-|+|.|.+|...+.-+...|. +|++.++++++.+.+.+.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~   44 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKAN   44 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHT
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcC
Confidence            358899999999998888888898 9999999999998876544

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.17  E-value=0.74  Score=32.78  Aligned_cols=93  Identities=14%  Similarity=0.186  Sum_probs=54.5

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          142 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      +|.|+|+ |-+|+++.+++...+. +++.....                  +.  ...+         ..+|+++|....
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~------------------~~--~~~~---------~~~DVvIDFS~p   51 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDV------------------NG--VEEL---------DSPDVVIDFSSP   51 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEET------------------TE--EEEC---------SCCSEEEECSCG
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCC-eEEEEECC------------------Cc--HHHh---------ccCCEEEEecCH
Confidence            6899997 9999999999998887 55543211                  00  0000         157888888777


Q ss_pred             HHHHHHHHHHhhcCCcEEEEeccCCCCCcccccHHHHHhcCCEEEee
Q 020435          221 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  267 (326)
Q Consensus       221 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~~~  267 (326)
                      .. ....++..... +.=+.+|.+. ...-......-..++..+...
T Consensus        52 ~~-~~~~l~~~~~~-~~p~ViGTTG-~~~~~~~~i~~~ak~~pv~~a   95 (128)
T d1vm6a3          52 EA-LPKTVDLCKKY-RAGLVLGTTA-LKEEHLQMLRELSKEVPVVQA   95 (128)
T ss_dssp             GG-HHHHHHHHHHH-TCEEEECCCS-CCHHHHHHHHHHTTTSEEEEC
T ss_pred             HH-HHHHHHHHHhc-CCCEEEEcCC-CCHHHHHHHHHHHhhCCEEee
Confidence            66 44555544443 5666676642 222223333334456555443

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.16  E-value=0.12  Score=41.72  Aligned_cols=34  Identities=32%  Similarity=0.504  Sum_probs=29.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  175 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~  175 (326)
                      +.|||+|+ +++|.++++.+...|+ +|+.++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence            35788887 8999999999999999 9999987643

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.15  E-value=0.41  Score=38.09  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=28.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHH-HHcCCCEEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDV  172 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la-~~~g~~~V~~~~~  172 (326)
                      .+.+|+|.|.|.+|..+++++ +..|+ +|++++.
T Consensus        30 ~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vsd   63 (234)
T d1b26a1          30 KKATVAVQGFGNVGQFAALLISQELGS-KVVAVSD   63 (234)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEeec
Confidence            588999999999999999887 56899 8888763

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=90.92  E-value=0.73  Score=34.54  Aligned_cols=93  Identities=18%  Similarity=0.241  Sum_probs=55.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh--hHHHHHHhc----C---CcE-------EEc------CCCCCCccH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRF----G---VTE-------FVN------SKNCGDKSV  199 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~--~~~~~~~~~----g---~~~-------vi~------~~~~~~~~~  199 (326)
                      +|.|.|-|-+|.++.+.+...+. +++++-...  +....+-++    |   .+.       +++      ...   .+ 
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~---~~-   76 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAV---KD-   76 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECC---SS-
T ss_pred             EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEec---CC-
Confidence            68899999999999998877788 677665332  233333221    1   110       011      111   11 


Q ss_pred             HHHHHHhcCC--CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          200 SQIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       200 ~~~i~~~~~~--g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                         ..++-+.  ++|+|+||.|.-...+.+...+..+ -.-|.++.
T Consensus        77 ---p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSA  118 (168)
T d2g82a1          77 ---PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITA  118 (168)
T ss_dssp             ---GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESS
T ss_pred             ---hHHCcccccCCceeEeccccccchHHhhhhhccc-cceeeecc
Confidence               1122222  8999999999755456777778776 65566643

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.29  Score=39.87  Aligned_cols=102  Identities=11%  Similarity=0.020  Sum_probs=58.0

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHH----c-CCC-EEEEEcCChhHHHHHHhc-C-----CcEEEcCCCCCCccHH---H
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARL----C-GAT-RIIGVDVISEKFEIGKRF-G-----VTEFVNSKNCGDKSVS---Q  201 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~----~-g~~-~V~~~~~~~~~~~~~~~~-g-----~~~vi~~~~~~~~~~~---~  201 (326)
                      .++.-+||-+|+|. |.....+++.    . +.. ++++++.+++..+.+++. .     ....++...   .++.   .
T Consensus        38 ~~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~  113 (280)
T d1jqea_          38 TKSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHK---ETSSEYQS  113 (280)
T ss_dssp             TCSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEEC---SCHHHHHH
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchh---hhhhhhcc
Confidence            34455899998753 3333333332    2 221 678999998888777542 1     111222222   2222   2


Q ss_pred             HHHHhcCC-CccEEEEcCC-----c-HHHHHHHHHHhhcCCcEEEEecc
Q 020435          202 IIIDMTDG-GADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       202 ~i~~~~~~-g~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ........ .+|+|+....     . ..+++.+.++|+++ |.++....
T Consensus       114 ~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg-G~l~i~~~  161 (280)
T d1jqea_         114 RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN-AKMLIIVV  161 (280)
T ss_dssp             HHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             hhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC-CEEEEEEe
Confidence            22222233 8999985332     2 34688999999998 98877654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.51  E-value=0.1  Score=37.09  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=31.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      +.+.+++|+|+|.+|+-+++.+...|. +|..+.+++
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence            456799999999999999999999998 999998764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=90.40  E-value=0.19  Score=37.54  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=29.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCC-EEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~-~V~~~~~~~  174 (326)
                      .|++|+|+|+|.+|+.+++.++..+.+ +|+++++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            378999999999999998888877642 788887654

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.40  E-value=2.2  Score=35.21  Aligned_cols=109  Identities=18%  Similarity=0.144  Sum_probs=66.1

Q ss_pred             hhcccCCCCEEEEE-ccCHHHHHHHHHHHHcCCCEEEEEc---CChhHHHHHHhcCCcEEEcCCC---------------
Q 020435          133 RTANVEVGSTVVIF-GLGSIGLAVAEGARLCGATRIIGVD---VISEKFEIGKRFGVTEFVNSKN---------------  193 (326)
Q Consensus       133 ~~~~~~~~~~vlI~-Gag~~G~~a~~la~~~g~~~V~~~~---~~~~~~~~~~~~g~~~vi~~~~---------------  193 (326)
                      +...++.+.+.+|. .+|+.|++++..++.+|. +++++.   .++.+.+.++.+|++.+.....               
T Consensus        57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~-~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~  135 (320)
T d1z7wa1          57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGY-KLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILA  135 (320)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHH
T ss_pred             HcCCCCCCCceEEeeCCchHHHHHHHHHHhhcc-ceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHH
Confidence            44455566555555 569999999999999998 544443   3556777888899864432111               


Q ss_pred             ----------CC-Cc-------cHHHHHHHhcCCCccEEEEcCCcHHHHH---HHHHHhhcCCcEEEEecc
Q 020435          194 ----------CG-DK-------SVSQIIIDMTDGGADYCFECVGLASLVQ---EAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       194 ----------~~-~~-------~~~~~i~~~~~~g~d~v~d~~g~~~~~~---~~~~~l~~~~G~~v~~g~  243 (326)
                                +. ..       ....++.+...+.+|.++-++|+...+.   ..++...+. -+++.+..
T Consensus       136 ~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~-~~~igve~  205 (320)
T d1z7wa1         136 KTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNAN-VKLYGVEP  205 (320)
T ss_dssp             HCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEEE
T ss_pred             hCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcc-eeeecccc
Confidence                      00 00       1222444444457899998888765444   334445555 66666543

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=90.37  E-value=0.22  Score=40.07  Aligned_cols=34  Identities=38%  Similarity=0.483  Sum_probs=30.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      .|.+|+|.|.|.+|..+++++...|+ +|++++.+
T Consensus        30 ~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD~   63 (242)
T d1v9la1          30 EGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSDI   63 (242)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeecc
Confidence            68899999999999999999999999 88887743

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.36  E-value=0.15  Score=37.65  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      .|.+|||+|+|.+|.--+..+...|+ +|++++.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            58999999999999999999999999 8888853

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.18  E-value=0.38  Score=39.69  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=32.9

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChh--HHHHHHhcC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFG  184 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~--~~~~~~~~g  184 (326)
                      .+|||+|+ |-+|..++..+...|. +|+++++...  ..+.++.++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~   46 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELG   46 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhc
Confidence            48999997 9999999998888899 9999987543  234444443

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.05  E-value=0.85  Score=33.29  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEK  176 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~  176 (326)
                      .+.+|.|+|+|.+|..++..+...+. .+++.++..+++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            46799999999999988888877653 479999988766

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.03  E-value=2.6  Score=31.42  Aligned_cols=89  Identities=22%  Similarity=0.220  Sum_probs=59.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCEEEEE-cCChhHHHH-HHhcCCc---EEEcCCCCCCccHHHHHHHhcCCCccEEE
Q 020435          142 TVVIFGLGSIGLAVAEGARLC-GATRIIGV-DVISEKFEI-GKRFGVT---EFVNSKNCGDKSVSQIIIDMTDGGADYCF  215 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~-g~~~V~~~-~~~~~~~~~-~~~~g~~---~vi~~~~~~~~~~~~~i~~~~~~g~d~v~  215 (326)
                      +|.|+|.|.+|...++..+.. +. +++++ ++++++.+. .++++..   .++       .++.+.+..   ..+|+|+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~---~~iD~v~   71 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIH-------GSYESLLED---PEIDALY   71 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEE-------SSHHHHHHC---TTCCEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeec-------CcHHHhhhc---cccceee
Confidence            688999999999888888776 55 67755 556666554 4455531   232       233333322   2799999


Q ss_pred             EcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          216 ECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       216 d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      -|......++.+..++..+  .=+.+..
T Consensus        72 I~tp~~~h~~~~~~~l~~g--~~v~~EK   97 (184)
T d1ydwa1          72 VPLPTSLHVEWAIKAAEKG--KHILLEK   97 (184)
T ss_dssp             ECCCGGGHHHHHHHHHTTT--CEEEECS
T ss_pred             ecccchhhcchhhhhhhcc--ceeeccc
Confidence            8888877688888888875  5566643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.03  E-value=0.14  Score=41.10  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=29.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  175 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~  175 (326)
                      -|+|+|+|+.|++++..+...|. +|.++++.+.
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            37889999999999999999998 9999998764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.96  E-value=0.18  Score=42.19  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      ..+|+|+|||..|+.++..+...|. +|.+++..+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            5789999999999999999988898 999998654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.92  E-value=0.39  Score=33.83  Aligned_cols=85  Identities=12%  Similarity=0.028  Sum_probs=49.8

Q ss_pred             CCCEEEEEccCHH-----------HHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhc
Q 020435          139 VGSTVVIFGLGSI-----------GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT  207 (326)
Q Consensus       139 ~~~~vlI~Gag~~-----------G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~  207 (326)
                      ..++|||+|+|++           +..+++.+|..|. +++.+..+++....-.+. +|++.-..    - ..+.+.+..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVstd~d~-aD~lYfep----l-t~e~v~~Ii   75 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVSTDYDT-SDRLYFEP----V-TLEDVLEIV   75 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSSTTSTTS-SSEEECCC----C-SHHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhhcChhh-cCceEEcc----C-CHHHHHHHH
Confidence            3468999998753           3445555566798 899998888765432111 44444211    1 122333333


Q ss_pred             CC-CccEEEEcCCcHHHHHHHHHH
Q 020435          208 DG-GADYCFECVGLASLVQEAYAC  230 (326)
Q Consensus       208 ~~-g~d~v~d~~g~~~~~~~~~~~  230 (326)
                      .. +.|.|+-..|+...++.+..+
T Consensus        76 ~~E~p~~ii~~~GGQtalnla~~L   99 (121)
T d1a9xa4          76 RIEKPKGVIVQYGGQTPLKLARAL   99 (121)
T ss_dssp             HHHCCSEEECSSSTHHHHTTHHHH
T ss_pred             HHhCCCEEEeehhhhhHHHHHHHH
Confidence            23 778888888888755544443

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.79  E-value=0.29  Score=36.21  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=30.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .+++|+|+|+|.+|.=++..+...|+..|+++.+.+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            467999999999999999999999987788887643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=89.77  E-value=1.3  Score=32.22  Aligned_cols=39  Identities=28%  Similarity=0.384  Sum_probs=31.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  177 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~  177 (326)
                      +..+|.|+|+|.+|..++..+...| +.+++.++..+++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            3569999999999998888887766 34899999887653

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.66  E-value=0.2  Score=41.20  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=31.7

Q ss_pred             CCCEEEEEcc-C--HHHHHHHHHHHHcCCCEEEEEcCChhH
Q 020435          139 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEK  176 (326)
Q Consensus       139 ~~~~vlI~Ga-g--~~G~~a~~la~~~g~~~V~~~~~~~~~  176 (326)
                      +|+++||+|+ |  +||.++++.+...|+ +|+.+.++++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~   46 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPAL   46 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchhh
Confidence            5889999997 5  799999999999999 99988876543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.40  E-value=0.37  Score=36.75  Aligned_cols=98  Identities=9%  Similarity=0.090  Sum_probs=57.1

Q ss_pred             hhhhcc-cCCCCEEEEE--ccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc---EEEcCCCCCCccHH
Q 020435          131 AWRTAN-VEVGSTVVIF--GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVS  200 (326)
Q Consensus       131 l~~~~~-~~~~~~vlI~--Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~  200 (326)
                      ++.... ...+.+||=.  |.|++|+-++    ..|+.+|+.++.+++..+.+++    ++..   .++.      .+..
T Consensus        32 lFn~l~~~~~~~~vLDlfaGsG~~g~ea~----srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~------~D~~  101 (182)
T d2fhpa1          32 IFNMIGPYFDGGMALDLYSGSGGLAIEAV----SRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRK------MDAN  101 (182)
T ss_dssp             HHHHHCSCCSSCEEEETTCTTCHHHHHHH----HTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE------SCHH
T ss_pred             HHHHHHHhcCCCEEEEcccccccccceee----ecchhHHHHHHHHHHHHHHHHHHhhhhhccccccccc------ccch
Confidence            444433 3468888877  3477777433    3788789999999998887653    4432   3443      2344


Q ss_pred             HHHHHhc-CC-CccEEE-EcCCc----HHHHHHHHH--HhhcCCcEEE
Q 020435          201 QIIIDMT-DG-GADYCF-ECVGL----ASLVQEAYA--CCRKGWGKTI  239 (326)
Q Consensus       201 ~~i~~~~-~~-g~d~v~-d~~g~----~~~~~~~~~--~l~~~~G~~v  239 (326)
                      +.+.++. .+ .+|+|| |..-.    ...+..+.+  .|+++ |.++
T Consensus       102 ~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~-giIi  148 (182)
T d2fhpa1         102 RALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNE-AVIV  148 (182)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEE-EEEE
T ss_pred             hhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCC-EEEE
Confidence            4454432 23 899998 54322    222333333  36776 6554

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=89.34  E-value=0.18  Score=40.20  Aligned_cols=32  Identities=34%  Similarity=0.454  Sum_probs=28.1

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  175 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~  175 (326)
                      |+|+|+|..|++++..+...|. +|+++++.+.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            7889999999999988888999 9999997653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=89.16  E-value=0.39  Score=35.54  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=33.1

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  177 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~  177 (326)
                      .++..+|.|+|+|.+|..++.++...+..+++.++..+++.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~   44 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMP   44 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccc
Confidence            35568999999999999888887777765899998777653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.98  E-value=0.15  Score=41.32  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=28.8

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      +|+|+|+|..|+.++..+...|. +|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            68999999999999999999999 899998653

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.95  E-value=0.99  Score=37.45  Aligned_cols=99  Identities=20%  Similarity=0.260  Sum_probs=59.3

Q ss_pred             hhcccCCCCEEEEEc-c-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEEEcCCCCCCccHHHHHHHh
Q 020435          133 RTANVEVGSTVVIFG-L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       133 ~~~~~~~~~~vlI~G-a-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~  206 (326)
                      ....+++|++||=.- | |+-...++++....|  .+++.+.++.+...+    +.+|...++....   +...  + ..
T Consensus       110 ~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~--~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~---d~~~--~-~~  181 (313)
T d1ixka_         110 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDG--VIYAFDVDENRLRETRLNLSRLGVLNVILFHS---SSLH--I-GE  181 (313)
T ss_dssp             HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCS--EEEEECSCHHHHHHHHHHHHHHTCCSEEEESS---CGGG--G-GG
T ss_pred             hcccCCccceeeecccchhhhhHhhhhhccccc--ceeeeccCHHHHHHHHHHHHHHHhhccccccc---cccc--c-cc
Confidence            446788999998773 3 554443333333322  799999999988765    3467655543333   1110  0 12


Q ss_pred             cCCCccEEE-E--cCCc-------------------------HHHHHHHHHHhhcCCcEEEE
Q 020435          207 TDGGADYCF-E--CVGL-------------------------ASLVQEAYACCRKGWGKTIV  240 (326)
Q Consensus       207 ~~~g~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~  240 (326)
                      ..+.||.|+ |  |.|.                         ...+..++..++++ |++|-
T Consensus       182 ~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g-G~lVY  242 (313)
T d1ixka_         182 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVY  242 (313)
T ss_dssp             GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC-cEEEE
Confidence            233799997 6  4443                         12567788899997 76543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=88.85  E-value=0.35  Score=36.23  Aligned_cols=76  Identities=18%  Similarity=0.317  Sum_probs=55.2

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          138 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       138 ~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      -.|.+|+|+|- ..+|.-+..|+...|+ +|+...+..                      .+..+.+++     +|+++.
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t----------------------~~l~~~~~~-----ADivI~   86 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT----------------------KNLRHHVEN-----ADLLIV   86 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC----------------------SCHHHHHHH-----CSEEEE
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhc-ccccccccc----------------------chhHHHHhh-----hhHhhh
Confidence            36999999996 6899999999999999 887665332                      233333333     799999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      ++|.+..+.  -+.++++ ..++.+|..
T Consensus        87 a~G~p~~i~--~~~vk~g-~vvIDvGi~  111 (166)
T d1b0aa1          87 AVGKPGFIP--GDWIKEG-AIVIDVGIN  111 (166)
T ss_dssp             CSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred             hccCccccc--ccccCCC-cEEEecCce
Confidence            999877443  2357787 888888764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.78  E-value=0.2  Score=37.84  Aligned_cols=29  Identities=31%  Similarity=0.231  Sum_probs=26.5

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcC
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      |+|+|+|+.|+.++..+...|. +|..+++
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            7889999999999999999999 8888875

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.70  E-value=1  Score=34.68  Aligned_cols=72  Identities=22%  Similarity=0.342  Sum_probs=46.0

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcC-CcEEEcCCCCCCccHHHHHHHhcCCC
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDMTDGG  210 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~~i~~~~~~g  210 (326)
                      ....++ .|++||=.|+|+ |.+++. +...|+.+|++++.+++..+.+++.- .-.++..+-   .       + .++.
T Consensus        42 ~~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~---~-------~-l~~~  107 (197)
T d1ne2a_          42 YNDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV---S-------E-ISGK  107 (197)
T ss_dssp             HHHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCG---G-------G-CCCC
T ss_pred             HHcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEEeh---h-------h-cCCc
Confidence            344555 589999998764 444443 44467668999999999998887632 223443222   1       1 2348


Q ss_pred             ccEEEEc
Q 020435          211 ADYCFEC  217 (326)
Q Consensus       211 ~d~v~d~  217 (326)
                      +|+||..
T Consensus       108 fD~Vi~N  114 (197)
T d1ne2a_         108 YDTWIMN  114 (197)
T ss_dssp             EEEEEEC
T ss_pred             ceEEEeC
Confidence            9999853

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=88.58  E-value=0.17  Score=41.16  Aligned_cols=31  Identities=26%  Similarity=0.584  Sum_probs=23.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      .+|||+|+ |-+|..++..+...|  .++.+++.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g--~~v~~~~~   32 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG--NLIALDVH   32 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS--EEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC--CEEEEECC
Confidence            37999997 999999988777666  45555543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.49  E-value=0.22  Score=38.87  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=27.8

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      |+|+|+|..|+.++..+...|. +|.++++.+
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            7888999999999999989998 999999764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=88.42  E-value=0.14  Score=41.46  Aligned_cols=99  Identities=13%  Similarity=0.094  Sum_probs=61.9

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHH----hcCC-c--EEEcCCCCCCccHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGK----RFGV-T--EFVNSKNCGDKSVSQI  202 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~----~~g~-~--~vi~~~~~~~~~~~~~  202 (326)
                      +.....+....+||-+|+|. |..+..+++.. +. ++++++. ++..+.++    +.+. +  ..+..+      +.  
T Consensus        72 ~~~~~d~~~~~~VLDvGcG~-G~~~~~la~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D------~~--  140 (253)
T d1tw3a2          72 PAAAYDWTNVRHVLDVGGGK-GGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGD------FF--  140 (253)
T ss_dssp             HHHHSCCTTCSEEEEETCTT-SHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECC------TT--
T ss_pred             HHhhcCCccCCEEEEeCCCC-CHHHHHHHHhccee-EEEEccC-HHHHHHHHHHHHHhhcccchhhcccc------ch--
Confidence            34455667778999998875 78888899886 45 8888885 44444443    3332 1  222211      10  


Q ss_pred             HHHhcCCCccEEEEcC-----CcH---HHHHHHHHHhhcCCcEEEEecc
Q 020435          203 IIDMTDGGADYCFECV-----GLA---SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       203 i~~~~~~g~d~v~d~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                        +..++++|+|+-..     ..+   .+++.+.++|+|+ |+++....
T Consensus       141 --~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG-G~l~i~e~  186 (253)
T d1tw3a2         141 --EPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG-GRILIHER  186 (253)
T ss_dssp             --SCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             --hhcccchhheeeccccccCCchhhHHHHHHHHHhcCCC-cEEEEEec
Confidence              11123799987422     122   3477889999998 99988754

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.40  E-value=4.3  Score=32.78  Aligned_cols=100  Identities=19%  Similarity=0.207  Sum_probs=60.1

Q ss_pred             hhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHhcCCcEEEcCCC-----------------
Q 020435          133 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD--VISEKFEIGKRFGVTEFVNSKN-----------------  193 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~--~~~~~~~~~~~~g~~~vi~~~~-----------------  193 (326)
                      +...++++.+|+..++|+.|.+++..++.+|..-++.+.  .++.+...++.+|++.+.....                 
T Consensus        54 ~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~~~~~~~~~~~~~  133 (302)
T d1fcja_          54 KRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASD  133 (302)
T ss_dssp             HHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHTS
T ss_pred             HcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccccccchhhhHHHHHHhhh
Confidence            444566676666556799999999999999884222222  3445666777788754321110                 


Q ss_pred             ---------CCC--------ccHHHHHHHhcCCCccEEEEcCCcHHHHHHHHHHhh
Q 020435          194 ---------CGD--------KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR  232 (326)
Q Consensus       194 ---------~~~--------~~~~~~i~~~~~~g~d~v~d~~g~~~~~~~~~~~l~  232 (326)
                               ..+        .....++.+..++.+|.++-++|+...+.-.+..++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk  189 (302)
T d1fcja_         134 PQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIK  189 (302)
T ss_dssp             TTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHH
T ss_pred             ccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeee
Confidence                     000        112234555555578999999888654555554444

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=0.13  Score=39.45  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      ++..|+|+|+|+.|+.++..+...|. +|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeec
Confidence            35689999999999999999999999 888887543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.22  E-value=0.37  Score=37.25  Aligned_cols=69  Identities=16%  Similarity=0.254  Sum_probs=42.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEc
Q 020435          140 GSTVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  217 (326)
Q Consensus       140 ~~~vlI~Ga-g~~G~~a~~la~~~g~-~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~  217 (326)
                      ..+|||+|+ |-+|..+++.+...|. .+|++..+++...       ...+ ....   .++.+ +.+...+.+|.|++|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-------~~~~-~~~~---~d~~~-~~~~~~~~~d~vi~~   69 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-------HPRL-DNPV---GPLAE-LLPQLDGSIDTAFCC   69 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-------CTTE-ECCB---SCHHH-HGGGCCSCCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-------cccc-cccc---cchhh-hhhccccchheeeee
Confidence            479999998 9999999998887774 2566666543210       0011 1111   23333 223333378999999


Q ss_pred             CCc
Q 020435          218 VGL  220 (326)
Q Consensus       218 ~g~  220 (326)
                      +|.
T Consensus        70 ~g~   72 (212)
T d2a35a1          70 LGT   72 (212)
T ss_dssp             CCC
T ss_pred             eee
Confidence            875

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.17  E-value=0.75  Score=37.64  Aligned_cols=97  Identities=15%  Similarity=0.265  Sum_probs=57.8

Q ss_pred             hhcccCCCCEEEEEc-c-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HhcCCcEEE-cCCCCCCccHHHHHHH
Q 020435          133 RTANVEVGSTVVIFG-L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFV-NSKNCGDKSVSQIIID  205 (326)
Q Consensus       133 ~~~~~~~~~~vlI~G-a-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~----~~~g~~~vi-~~~~~~~~~~~~~i~~  205 (326)
                      .....+++++||=.- | |+-..+++++   ..-..|++.+.++.+...+    +.+|...++ ...+   .....   .
T Consensus        96 ~~L~~~~g~~vLD~CAaPGgKt~~la~l---~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~---~~~~~---~  166 (284)
T d1sqga2          96 TWLAPQNGEHILDLCAAPGGKTTHILEV---APEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPSQ---W  166 (284)
T ss_dssp             HHHCCCTTCEEEEESCTTCHHHHHHHHH---CTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTHH---H
T ss_pred             cccCccccceeEeccCccccchhhhhhh---hhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc---cccch---h
Confidence            345778999999883 3 5544444443   3223899999999987765    457765333 2222   11111   1


Q ss_pred             hcCCCccEEE-E--cCCcH-------------------------HHHHHHHHHhhcCCcEEE
Q 020435          206 MTDGGADYCF-E--CVGLA-------------------------SLVQEAYACCRKGWGKTI  239 (326)
Q Consensus       206 ~~~~g~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v  239 (326)
                      ...+.||.|+ |  |.|..                         ..+..+++.++++ |++|
T Consensus       167 ~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g-G~lv  227 (284)
T d1sqga2         167 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLV  227 (284)
T ss_dssp             HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEE
T ss_pred             cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC-ceEE
Confidence            2223799997 7  44441                         2456677778886 6654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.17  E-value=0.34  Score=42.30  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=29.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ..+|||+|+|++|.-++..+-..|.+++..++.+
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            4689999999999999999989999888888853

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=88.16  E-value=0.57  Score=36.00  Aligned_cols=90  Identities=24%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      +.++++||-+|+|. |..+..+     . ++++++.+++..+.+++.+.. ++..+.   .++     ...++.+|+|+.
T Consensus        34 ~~~~~~vLDiGcG~-G~~~~~~-----~-~~~giD~s~~~~~~a~~~~~~-~~~~d~---~~l-----~~~~~~fD~I~~   97 (208)
T d1vlma_          34 LLPEGRGVEIGVGT-GRFAVPL-----K-IKIGVEPSERMAEIARKRGVF-VLKGTA---ENL-----PLKDESFDFALM   97 (208)
T ss_dssp             HCCSSCEEEETCTT-STTHHHH-----T-CCEEEESCHHHHHHHHHTTCE-EEECBT---TBC-----CSCTTCEEEEEE
T ss_pred             hCCCCeEEEECCCC-ccccccc-----c-eEEEEeCChhhcccccccccc-cccccc---ccc-----cccccccccccc
Confidence            45677999999764 4444333     2 578999999999999887654 333222   111     111237999986


Q ss_pred             cCC-----c-HHHHHHHHHHhhcCCcEEEEecc
Q 020435          217 CVG-----L-ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       217 ~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ...     . ...++.+.+.|+++ |.++....
T Consensus        98 ~~~l~h~~d~~~~l~~~~~~L~pg-G~l~i~~~  129 (208)
T d1vlma_          98 VTTICFVDDPERALKEAYRILKKG-GYLIVGIV  129 (208)
T ss_dssp             ESCGGGSSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccccccccccccchhhhhhcCCCC-ceEEEEec
Confidence            332     2 23578899999998 99887754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.15  E-value=1.4  Score=30.99  Aligned_cols=92  Identities=16%  Similarity=0.076  Sum_probs=59.9

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCcH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  221 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~~  221 (326)
                      .++|.|.|.+|..+++.++  +. .+++++.++++.+.++..|.. ++..+.    .-.+.+++.--..++.++-+....
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~-~i~Gd~----~~~~~L~~a~i~~A~~vi~~~~~d   73 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGAN-FVHGDP----TRVSDLEKANVRGARAVIVNLESD   73 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCE-EEESCT----TSHHHHHHTTCTTCSEEEECCSSH
T ss_pred             EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCcc-cccccc----CCHHHHHHhhhhcCcEEEEeccch
Confidence            4788899999998877664  44 677788888888888888874 444433    223445554333888998877765


Q ss_pred             HH---HHHHHHHhhcCCcEEEEec
Q 020435          222 SL---VQEAYACCRKGWGKTIVLG  242 (326)
Q Consensus       222 ~~---~~~~~~~l~~~~G~~v~~g  242 (326)
                      ..   .-...+.+.+. .+++...
T Consensus        74 ~~n~~~~~~~r~~~~~-~~iia~~   96 (129)
T d2fy8a1          74 SETIHCILGIRKIDES-VRIIAEA   96 (129)
T ss_dssp             HHHHHHHHHHHHHCSS-SCEEEEC
T ss_pred             hhhHHHHHHHHHHCCC-ceEEEEE
Confidence            42   22334455665 5555553

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.10  E-value=0.22  Score=38.77  Aligned_cols=30  Identities=30%  Similarity=0.292  Sum_probs=26.9

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      |+|+|+|+.|+.++..+...|. +|++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~   35 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            6788999999999999999999 89999864

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.01  E-value=0.64  Score=34.93  Aligned_cols=83  Identities=14%  Similarity=0.208  Sum_probs=57.0

Q ss_pred             hhhhcccC-CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcC
Q 020435          131 AWRTANVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD  208 (326)
Q Consensus       131 l~~~~~~~-~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~  208 (326)
                      +++.-++. .|.+|+|+|. ..+|.-++.|+...|+ +|+.........                      .+.++    
T Consensus        29 lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t~~l----------------------~~~~~----   81 (170)
T d1a4ia1          29 LIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHL----------------------DEEVN----   81 (170)
T ss_dssp             HHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSH----------------------HHHHT----
T ss_pred             HHHHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEecccccH----------------------HHHHh----
Confidence            34444443 6899999996 6899999999999999 888876433222                      11111    


Q ss_pred             CCccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          209 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       209 ~g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                       ..|+++.+.|.+..+.  -+.++++ -.++.+|..
T Consensus        82 -~aDivi~a~G~~~~i~--~~~vk~g-~iviDvgi~  113 (170)
T d1a4ia1          82 -KGDILVVATGQPEMVK--GEWIKPG-AIVIDCGIN  113 (170)
T ss_dssp             -TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCB
T ss_pred             -hccchhhccccccccc--cccccCC-CeEeccCcc
Confidence             4788888888877333  3467887 778877753

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.00  E-value=0.24  Score=41.11  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=28.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .|+|+|||..|++++..++..|. +|+++++.+
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAG   40 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence            58899999999999999999999 899998654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=87.89  E-value=0.31  Score=39.36  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=30.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      .|.+|+|.|.|.+|..+++++...|+ +|+++..
T Consensus        35 ~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavsD   67 (255)
T d1bgva1          35 VGKTVALAGFGNVAWGAAKKLAELGA-KAVTLSG   67 (255)
T ss_dssp             TTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            68899999999999999999999999 8888763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.69  E-value=0.77  Score=32.59  Aligned_cols=62  Identities=19%  Similarity=0.201  Sum_probs=48.5

Q ss_pred             hhhhcccCCCCEEEEE-ccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCC
Q 020435          131 AWRTANVEVGSTVVIF-GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  192 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~-Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~  192 (326)
                      .++.+++..-+.+++. ..-..-.++++++|.++..++++...+++..+.++++|++.++++.
T Consensus        57 ~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~  119 (132)
T d1lssa_          57 TLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE  119 (132)
T ss_dssp             HHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred             hhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHH
Confidence            4567777777766665 3334556788899999887899999898889999999999998754

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.32  E-value=0.97  Score=37.62  Aligned_cols=93  Identities=15%  Similarity=0.129  Sum_probs=62.3

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHH----HhcCCcEEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~-~g~~~V~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      .+...++.|+|+|..+..-++.+.. ...++|.+..+++++.+.+    +..+.....+.        .+.+     .+.
T Consensus       122 ~~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~--------~~a~-----~~a  188 (320)
T d1omoa_         122 RKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP--------AEEA-----SRC  188 (320)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC--------HHHH-----TSS
T ss_pred             cCCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch--------hhhh-----ccc
Confidence            3456789999999998877777664 6777999999999887654    33444333221        1222     168


Q ss_pred             cEEEEcCCcHH-HHHHHHHHhhcCCcEEEEeccCC
Q 020435          212 DYCFECVGLAS-LVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       212 d~v~d~~g~~~-~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+|+-|..+.. .+.  .+.++++ -++..+|...
T Consensus       189 DiV~taT~s~~P~~~--~~~l~~G-~hv~~iGs~~  220 (320)
T d1omoa_         189 DVLVTTTPSRKPVVK--AEWVEEG-THINAIGADG  220 (320)
T ss_dssp             SEEEECCCCSSCCBC--GGGCCTT-CEEEECSCCS
T ss_pred             cEEEEeccCcccccc--hhhcCCC-CeEeecCCcc
Confidence            99998777643 122  2358897 8888888754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=87.32  E-value=0.26  Score=38.30  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=27.2

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      |+|+|+|+.|+.++..|...|. +|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            6788999999999999999999 89999864

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=87.02  E-value=1  Score=36.05  Aligned_cols=99  Identities=16%  Similarity=0.090  Sum_probs=61.8

Q ss_pred             hhhhcccCCCCEEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHH----hcCC-cE--EEcCCCCCCccHHHH
Q 020435          131 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGK----RFGV-TE--FVNSKNCGDKSVSQI  202 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~----~~g~-~~--vi~~~~~~~~~~~~~  202 (326)
                      +.+...+....+||-+|+|. |..+..++++. +. ++++++. ++..+.++    +.|. ++  +...+.     +   
T Consensus        73 ~~~~~d~~~~~~vlDvG~G~-G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~-----~---  141 (256)
T d1qzza2          73 PADAYDWSAVRHVLDVGGGN-GGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF-----F---  141 (256)
T ss_dssp             HHHTSCCTTCCEEEEETCTT-SHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT-----T---
T ss_pred             HHhcCCCccCCEEEEECCCC-CHHHHHHHHhhcCc-EEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeec-----c---
Confidence            33444566778999998766 78888999886 55 8999985 55444433    3332 22  222211     1   


Q ss_pred             HHHhcCCCccEEEEc-----CCc---HHHHHHHHHHhhcCCcEEEEecc
Q 020435          203 IIDMTDGGADYCFEC-----VGL---ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       203 i~~~~~~g~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                        +-.+.++|+++-.     ...   ...++.+.+.|+++ |+++.+..
T Consensus       142 --~~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg-G~llI~d~  187 (256)
T d1qzza2         142 --KPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG-GRLLVLDR  187 (256)
T ss_dssp             --SCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             --ccccccchhhhccccccccCcHHHHHHHHHHHhhcCCc-ceeEEEEe
Confidence              1112378988732     111   23477889999998 99998864

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.98  E-value=2.6  Score=32.00  Aligned_cols=107  Identities=18%  Similarity=0.224  Sum_probs=63.8

Q ss_pred             hhhcccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCCc-EEEcCCCCCCccHHHHHHHh
Q 020435          132 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDM  206 (326)
Q Consensus       132 ~~~~~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~~i~~~  206 (326)
                      .....++++++++=.+.|. |-....+++..+-.+|++++++++..+.+++    ++.. .++...-   .++...+...
T Consensus        16 i~~l~~~~~~~~lD~t~G~-Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f---~~~~~~~~~~   91 (192)
T d1m6ya2          16 IEFLKPEDEKIILDCTVGE-GGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---READFLLKTL   91 (192)
T ss_dssp             HHHHCCCTTCEEEETTCTT-SHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---GGHHHHHHHT
T ss_pred             HHhhCCCCCCEEEEecCCC-cHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHH---hhHHHHHHHc
Confidence            4556678888765444444 3333345555432399999999999888764    3322 2333222   3444444444


Q ss_pred             cCCCccEEE-EcCCcH--------------HHHHHHHHHhhcCCcEEEEecc
Q 020435          207 TDGGADYCF-ECVGLA--------------SLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       207 ~~~g~d~v~-d~~g~~--------------~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      ..+.+|.|+ |.--+.              ..+..+.+.|+++ |+++.+..
T Consensus        92 ~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g-G~l~ii~f  142 (192)
T d1m6ya2          92 GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG-GRIVVISF  142 (192)
T ss_dssp             TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE-EEEEEEES
T ss_pred             CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC-Ceeeeecc
Confidence            334899885 643221              2466777888997 98887754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=86.91  E-value=0.26  Score=37.02  Aligned_cols=31  Identities=35%  Similarity=0.327  Sum_probs=25.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEE
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  170 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~  170 (326)
                      .+++|+|+|+|.+|.-++..++..|. +|.++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCC-ceEEE
Confidence            46899999999999999999999987 44433

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=86.83  E-value=0.53  Score=39.84  Aligned_cols=32  Identities=25%  Similarity=0.303  Sum_probs=25.7

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      .+|||+|+ |-+|..++..+...|...|++++.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            37999987 999999999888888845666653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=86.82  E-value=0.32  Score=39.17  Aligned_cols=31  Identities=23%  Similarity=0.117  Sum_probs=27.8

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      |+|+|+|.+|+.++..+...|. +|+++++.+
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENK-NTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8899999999999998888898 999999754

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.55  E-value=0.26  Score=36.06  Aligned_cols=90  Identities=14%  Similarity=0.003  Sum_probs=53.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHhcCCcEEE-cCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~--g~~~V~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      -+|.|.|| |-+|+-+++++...  ...++..+.++...-+.+...+.+..+ +.+.   .++         .+.|++|-
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~---~~~---------~~~d~vf~   70 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDS---FDF---------SSVGLAFF   70 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGG---CCG---------GGCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchh---hhh---------ccceEEEe
Confidence            57999998 99999999999633  222666655443222222211111111 1111   111         17999999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      |.+........-.....+ ..++..+.
T Consensus        71 a~p~~~s~~~~~~~~~~g-~~VID~Ss   96 (144)
T d2hjsa1          71 AAAAEVSRAHAERARAAG-CSVIDLSG   96 (144)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CEEEETTC
T ss_pred             cCCcchhhhhccccccCC-ceEEeech
Confidence            999888566666677776 77776654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.46  E-value=0.52  Score=36.02  Aligned_cols=86  Identities=17%  Similarity=0.132  Sum_probs=55.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+.+|.|+|.|.+|..++++++.+|. +|+..++.....       .......     .++.+.+++     .|++.-+.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-------~~~~~~~-----~~l~ell~~-----sDii~i~~  104 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENKLP-------LGNATQV-----QHLSDLLNM-----SDVVSLHV  104 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCC-------CTTCEEC-----SCHHHHHHH-----CSEEEECC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccccch-------hhhhhhh-----hhHHHHHhh-----ccceeecc
Confidence            47899999999999999999999999 999998653211       0011111     234333333     67877554


Q ss_pred             C-cHH----HHHHHHHHhhcCCcEEEEecc
Q 020435          219 G-LAS----LVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       219 g-~~~----~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      . .+.    +-...++.++++ ..+|.++.
T Consensus       105 plt~~T~~li~~~~l~~mk~~-a~lIN~aR  133 (188)
T d1sc6a1         105 PENPSTKNMMGAKEISLMKPG-SLLINASR  133 (188)
T ss_dssp             CSSTTTTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred             cCCcchhhhccHHHHhhCCCC-CEEEEcCc
Confidence            4 221    124667777776 77776654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.46  E-value=0.61  Score=35.95  Aligned_cols=40  Identities=38%  Similarity=0.591  Sum_probs=35.4

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  182 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~  182 (326)
                      +|.|+|.|-+|+..+..+...|. +|++.+.++++.+.+.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            68899999999988888888898 99999999998888765

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.27  E-value=0.36  Score=37.40  Aligned_cols=30  Identities=23%  Similarity=0.269  Sum_probs=26.7

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      |+|+|+|+.|+.++..|...|. +|.++++.
T Consensus         6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            6778999999999999999999 89999764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.26  E-value=0.33  Score=37.85  Aligned_cols=31  Identities=29%  Similarity=0.254  Sum_probs=27.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      -++|+|+|+.|+.++..+..+|. +|.+++..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            36788999999999999999999 99999864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.22  E-value=0.79  Score=33.61  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=32.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  177 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~  177 (326)
                      |..+|.|+|+|.+|..++.++...+..+++.++..+++.
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~   40 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMP   40 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence            456999999999999888888888877899999777553

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.05  E-value=0.48  Score=38.94  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=30.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      .|.+|+|.|-|.+|..+++++...|+ +|++++.
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vsD   67 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVGE   67 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEc
Confidence            57899999999999999999999999 8988873

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=86.01  E-value=0.29  Score=40.82  Aligned_cols=31  Identities=29%  Similarity=0.297  Sum_probs=25.5

Q ss_pred             EEEEccCHHHHHHHHHHH-----HcCCCEEEEEcCCh
Q 020435          143 VVIFGLGSIGLAVAEGAR-----LCGATRIIGVDVIS  174 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~-----~~g~~~V~~~~~~~  174 (326)
                      |+|+|+|..|++++.++.     ..|. +|+++++.+
T Consensus        10 V~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~   45 (360)
T d1pn0a1          10 VLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   45 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence            789999999998887773     4688 899998654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.85  E-value=0.3  Score=40.30  Aligned_cols=32  Identities=16%  Similarity=0.313  Sum_probs=28.1

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      .|+|+|||..|+.++..+...|. +|.+++..+
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            47899999999999999988898 999998654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.83  E-value=0.36  Score=36.82  Aligned_cols=33  Identities=15%  Similarity=0.079  Sum_probs=28.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          140 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       140 ~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      ..+|+|+|+|+.|+.++..+...|. +|+++++.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCC-cEEEEEee
Confidence            3579999999999999988889999 88888743

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.82  E-value=1.6  Score=36.18  Aligned_cols=30  Identities=23%  Similarity=0.213  Sum_probs=27.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEc
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVD  171 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~  171 (326)
                      ++|||+|+ |-+|..++..+...|. +|++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence            68999987 9999999999988998 899885

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.76  E-value=2.8  Score=35.57  Aligned_cols=54  Identities=26%  Similarity=0.174  Sum_probs=39.7

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcC---ChhHHHHHHhcCCcEEEc
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKRFGVTEFVN  190 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~---~~~~~~~~~~~g~~~vi~  190 (326)
                      +++++.+|+-..+|+.|.+++..++.+|. +++++..   ++++.+.++.+|++.+..
T Consensus       140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGi-k~~Iv~P~~~~~~K~~~ira~GAeVi~~  196 (382)
T d1wkva1         140 RVEKGSLVADATSSNFGVALSAVARLYGY-RARVYLPGAAEEFGKLLPRLLGAQVIVD  196 (382)
T ss_dssp             TSCTTCEEEEECCHHHHHHHHHHHHHTTC-EEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCCEEEEeCCcHHHHHHHHHHHHcCC-CEEEEeeccccccccccccccCcceeec
Confidence            45667665444569999999999999998 5555543   456777888999976554

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.55  E-value=3.6  Score=33.33  Aligned_cols=46  Identities=20%  Similarity=0.268  Sum_probs=32.9

Q ss_pred             EEE-ccCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHhcCCcEEE
Q 020435          144 VIF-GLGSIGLAVAEGARLCGATRIIGVD--VISEKFEIGKRFGVTEFV  189 (326)
Q Consensus       144 lI~-Gag~~G~~a~~la~~~g~~~V~~~~--~~~~~~~~~~~~g~~~vi  189 (326)
                      +|. .+|+.|.+++..++..|..-++.+.  .++.+.+.++.+|++.++
T Consensus        58 vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~  106 (293)
T d1o58a_          58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVL  106 (293)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEE
Confidence            444 5699999999999999984333333  355677888889986543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.49  E-value=0.39  Score=39.43  Aligned_cols=31  Identities=32%  Similarity=0.486  Sum_probs=27.6

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      |+|+|+|..|+.++.-|...|+ +|+++++.+
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGA-KVILIEKEP   49 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            7888999999999999999999 899998643

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=85.39  E-value=0.24  Score=37.34  Aligned_cols=83  Identities=19%  Similarity=0.219  Sum_probs=51.9

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcCCc
Q 020435          142 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  220 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~g~  220 (326)
                      +|.|+|.|.+|...+..++.. +. +++++......  .   .....+....+     ..    .. ...+|+|+.|.+.
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~-elvav~~~~~~--~---~~~~~~~~~~~-----~~----~~-~~~~D~Vvi~tp~   68 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDM-DLVGIFSRRAT--L---DTKTPVFDVAD-----VD----KH-ADDVDVLFLCMGS   68 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSE-EEEEEEESSSC--C---SSSSCEEEGGG-----GG----GT-TTTCSEEEECSCT
T ss_pred             eEEEECChHHHHHHHHHHHhCCCc-EEEEEEecccc--c---ccccccccchh-----hh----hh-ccccceEEEeCCC
Confidence            689999999999888877764 55 56655532221  1   11111222211     11    11 1269999998888


Q ss_pred             HHHHHHHHHHhhcCCcEEEEe
Q 020435          221 ASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       221 ~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ....+.+..+|..+ -.++..
T Consensus        69 ~~h~~~a~~aL~aG-~~vv~~   88 (170)
T d1f06a1          69 ATDIPEQAPKFAQF-ACTVDT   88 (170)
T ss_dssp             TTHHHHHHHHHTTT-SEEECC
T ss_pred             cccHHHHHHHHHCC-CcEEEe
Confidence            77688899999996 666644

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.34  E-value=0.42  Score=37.29  Aligned_cols=31  Identities=32%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      |+|+|+|+.|+.++..|...|. +|++++..+
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~-kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            6788999999999999989999 899998643

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.33  E-value=0.56  Score=34.21  Aligned_cols=37  Identities=19%  Similarity=0.243  Sum_probs=29.9

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCC-CEEEEEcCChhHH
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKF  177 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~-~~V~~~~~~~~~~  177 (326)
                      .+|.|+|| |.+|..++.++...+. .+++.++..+.+.
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~   39 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG   39 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch
Confidence            47999997 9999999999988774 5788888765543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=85.30  E-value=0.44  Score=39.00  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=26.6

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      .|+|+|+|.+|++++..+...|..+|++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            69999999999988887777886469999865

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=85.27  E-value=3  Score=34.44  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=62.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcC---ChhHHHHHHhcCCcEEEcCCCC--------------------
Q 020435          138 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKRFGVTEFVNSKNC--------------------  194 (326)
Q Consensus       138 ~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~---~~~~~~~~~~~g~~~vi~~~~~--------------------  194 (326)
                      .+..+|+...+|+.|.+++..++..|. +++++..   +.++.+.++.+|++.+....+.                    
T Consensus        73 ~~~~~vv~assGN~g~a~A~~a~~~g~-~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (331)
T d1tdja1          73 QKAHGVITASAGNHAQGVAFSSARLGV-KALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVP  151 (331)
T ss_dssp             SCSSSCEEEECSSSHHHHHHHHHHTTC-CEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEECC
T ss_pred             CCCCeeeecccchhHHHHHHhhccccc-cceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhhhhhhcCCCcccc
Confidence            344556655679999999999999998 5555442   4456777888998654332221                    


Q ss_pred             --CCc-------cHHHHHHHhcCCCccEEEEcCCcHHHHH---HHHHHhhcCCcEEEEecc
Q 020435          195 --GDK-------SVSQIIIDMTDGGADYCFECVGLASLVQ---EAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       195 --~~~-------~~~~~i~~~~~~g~d~v~d~~g~~~~~~---~~~~~l~~~~G~~v~~g~  243 (326)
                        .+.       ....++.+. .+.+|.||-++|+.-.+.   ..++.+.++ .+++.+..
T Consensus       152 ~~~~~~~~~g~~t~~~Ei~~q-~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~-~~ii~ve~  210 (331)
T d1tdja1         152 PFDHPMVIAGQGTLALELLQQ-DAHLDRVFVPVGGGGLAAGVAVLIKQLMPQ-IKVIAVEA  210 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHH-CTTCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEEE
T ss_pred             ccCChHHhhhhhhHHHHHHHh-cCCCCEEEEeCChhHHHHHHHHHHHHhCCC-cEEEEecc
Confidence              000       011122222 127999998888754333   444455566 77777754

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=85.20  E-value=0.44  Score=37.36  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=27.5

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      |+|+|+|+.|+.++..+...|. +|.++++.+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            6778999999999999999999 899998654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.13  E-value=0.12  Score=41.59  Aligned_cols=44  Identities=18%  Similarity=0.026  Sum_probs=31.1

Q ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh
Q 020435          137 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  182 (326)
Q Consensus       137 ~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~  182 (326)
                      ..++++||=+|+|. |.....+++..+. .|++++-++...+.+++
T Consensus        49 ~~~g~~vLDlGcG~-G~~~~~~~~~~~~-~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          49 GLQGDTLIDIGSGP-TIYQVLAACDSFQ-DITLSDFTDRNREELEK   92 (257)
T ss_dssp             SCCEEEEEESSCTT-CCGGGTTGGGTEE-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCC-CHhHHHHhccccC-cEEEecCCHHHHHHHHH
Confidence            45678898889865 4444444444343 89999999999888764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.88  E-value=0.4  Score=39.70  Aligned_cols=31  Identities=26%  Similarity=0.357  Sum_probs=27.6

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      |+|+|+|..|+.++..++..|. +|++++.++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            6889999999999999999999 899998643

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=84.86  E-value=1.8  Score=32.43  Aligned_cols=97  Identities=21%  Similarity=0.300  Sum_probs=55.2

Q ss_pred             EEEEEccCHHHHHHHHHHHHc----CCCEEEEEcC--ChhHHHHHHhc-------CCc-------EEEcCCCC---CCcc
Q 020435          142 TVVIFGLGSIGLAVAEGARLC----GATRIIGVDV--ISEKFEIGKRF-------GVT-------EFVNSKNC---GDKS  198 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~----g~~~V~~~~~--~~~~~~~~~~~-------g~~-------~vi~~~~~---~~~~  198 (326)
                      +|.|.|-|-+|.++.+.+...    .. .|+++-.  +.+....+-++       ..+       .+++....   ...+
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~-~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDI-EIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCe-EEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            688999999999999877543    23 5666653  33344444221       111       11110000   0011


Q ss_pred             HHHHHHHhcCC--CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccC
Q 020435          199 VSQIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       199 ~~~~i~~~~~~--g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                          ..++-.+  ++|+|+||.|.-.....+...|..+ -.-|++..+
T Consensus        82 ----p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP  124 (173)
T d1obfo1          82 ----PAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGG-AKKVIISAP  124 (173)
T ss_dssp             ----GGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHT-CSEEEESSC
T ss_pred             ----HHHCcccccccceEEEecccccCHHHHHHHhccC-CcceEEecC
Confidence                1122222  9999999999744456777888887 776776543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.40  E-value=0.31  Score=39.51  Aligned_cols=45  Identities=18%  Similarity=0.035  Sum_probs=32.1

Q ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh
Q 020435          136 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  182 (326)
Q Consensus       136 ~~~~~~~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~  182 (326)
                      +...|.++|-+|+|+ |...+..+..... +|++++-++...+.+++
T Consensus        51 g~~~g~~vLDiGcG~-g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          51 GEVSGRTLIDIGSGP-TVYQLLSACSHFE-DITMTDFLEVNRQELGR   95 (263)
T ss_dssp             SCSCCSEEEEETCTT-CCGGGTTGGGGCS-EEEEECSCHHHHHHHHH
T ss_pred             CCCCCcEEEEeccCC-CHHHHHHhcccCC-eEEEEeCCHHHHHHHHH
Confidence            345688999999875 4333333434454 89999999999888764

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=84.13  E-value=2.6  Score=32.73  Aligned_cols=90  Identities=21%  Similarity=0.242  Sum_probs=57.4

Q ss_pred             EEEEEccCHHHH-HHHHHHHH-cCCCEEEE-EcCChhHHHH-HHhcCCc--EEEcCCCCCCccHHHHHHHhcCC-CccEE
Q 020435          142 TVVIFGLGSIGL-AVAEGARL-CGATRIIG-VDVISEKFEI-GKRFGVT--EFVNSKNCGDKSVSQIIIDMTDG-GADYC  214 (326)
Q Consensus       142 ~vlI~Gag~~G~-~a~~la~~-~g~~~V~~-~~~~~~~~~~-~~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~-g~d~v  214 (326)
                      +|.|+|+|.+|. ..+...+. -+. ++++ .++++++.+. .++++.+  .+..+.+     +    .++... .+|+|
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d-----~----~ell~~~~iD~V  104 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN-----F----DKIAKDPKIDAV  104 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSSS-----G----GGGGGCTTCCEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccCc-----h----hhhcccccceee
Confidence            889999999986 34444444 366 6664 4566777554 4556642  2332322     2    233333 89999


Q ss_pred             EEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          215 FECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       215 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +-|.......+.+..++..+  .=+++..
T Consensus       105 ~I~tp~~~H~~~~~~al~~g--k~v~~EK  131 (221)
T d1h6da1         105 YIILPNSLHAEFAIRAFKAG--KHVMCEK  131 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHTT--CEEEECS
T ss_pred             eeccchhhhhhHHHHhhhcc--hhhhcCC
Confidence            98888777688888899874  6666653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.13  E-value=0.52  Score=36.47  Aligned_cols=30  Identities=40%  Similarity=0.382  Sum_probs=26.8

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      |+|+|+|+.|+.++..+...|. +|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            6778999999999999999999 89999754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.10  E-value=0.54  Score=39.19  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=26.6

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCCh
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVIS  174 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~  174 (326)
                      .+|+|+|||..|++++..++..|. .+|++.++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            589999999999988876655442 2899998774

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.05  E-value=0.51  Score=38.06  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=27.0

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      |+|+|+|.+|+.++..+...|. +|+++++.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            7889999999999999888998 89999864

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.97  E-value=0.65  Score=36.25  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=27.3

Q ss_pred             CEEEEEccCHHHHHHHHHHHH--cCCCEEEEEcCChh
Q 020435          141 STVVIFGLGSIGLAVAEGARL--CGATRIIGVDVISE  175 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~--~g~~~V~~~~~~~~  175 (326)
                      .+|+|+|+|+.|+.+++.++.  .|. +|++.++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCC
Confidence            489999999999999986654  477 8999987653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=83.87  E-value=0.88  Score=31.48  Aligned_cols=35  Identities=14%  Similarity=0.019  Sum_probs=27.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHc---CCCEEEEEcCCh
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLC---GATRIIGVDVIS  174 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~---g~~~V~~~~~~~  174 (326)
                      .+++++|+|+|.+|.=+++++..+   |. +|..+.+++
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~   54 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGD   54 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSS
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhccccc-ccceecccc
Confidence            358999999999998877765543   76 888887653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.67  E-value=0.51  Score=36.51  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=26.6

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      |+|+|+|+.|+.++..|...|. +|.+++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            6788999999999999999999 89998753

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=83.59  E-value=0.78  Score=37.55  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=26.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      .+|||+|+ |-+|..+++.+...|. .|++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~   34 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT   34 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecC
Confidence            48999997 9999999999988888 7776653

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=83.58  E-value=2  Score=32.03  Aligned_cols=96  Identities=24%  Similarity=0.360  Sum_probs=57.9

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcC---ChhHHHHHHhc----C---CcE-------EEcCCCC---CCccHHH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKRF----G---VTE-------FVNSKNC---GDKSVSQ  201 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~---~~~~~~~~~~~----g---~~~-------vi~~~~~---~~~~~~~  201 (326)
                      +|.|.|-|-+|.++.+.+...+. +++++-.   +.+....+-++    |   .+.       +++...-   ...+   
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~---   77 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMK---   77 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSS---
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCC---
Confidence            68899999999999999887787 6666653   23445544322    1   110       1110000   0011   


Q ss_pred             HHHHhcC-C-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          202 IIIDMTD-G-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       202 ~i~~~~~-~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                       ..++-. + ++|+|+||.|.-.....+...+..+ -+-|++..
T Consensus        78 -p~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisa  119 (169)
T d1dssg1          78 -PENIPWSKAGAEYIVESTGVFTTIEKASAHFKGG-AKKVIISA  119 (169)
T ss_dssp             -GGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESS
T ss_pred             -hHHCCccccCCCEEEecCceEcCHHHHHHHHhcC-CceEeecC
Confidence             111111 2 8999999999865566777788876 77777754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.56  E-value=1  Score=34.32  Aligned_cols=39  Identities=18%  Similarity=0.271  Sum_probs=33.0

Q ss_pred             EEEEEccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh
Q 020435          142 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  182 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~  182 (326)
                      +|.|+|.|-+|+.++..+ +.|. +|++++.++++.+.+++
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence            688999999999877655 5698 99999999999888764

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=83.52  E-value=0.15  Score=38.31  Aligned_cols=89  Identities=21%  Similarity=0.281  Sum_probs=51.7

Q ss_pred             EEEEEcc-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHhcC------Cc--EEEcCCCCCCccHHHHHHHhcCCCc
Q 020435          142 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFG------VT--EFVNSKNCGDKSVSQIIIDMTDGGA  211 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~la~~~-g~~~V~~~~~~~~~~~~~~~~g------~~--~vi~~~~~~~~~~~~~i~~~~~~g~  211 (326)
                      +|.|+|+ |-+|+++++++... ++ ++++....+.....-+++|      ..  .+.+..+    .        ....+
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~-~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~----~--------~~~~~   72 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLD----A--------VKDDF   72 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCST----T--------TTTSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecccchhccchhhhhhccccCCceeeccHH----H--------Hhccc
Confidence            7889997 99999999999764 55 5544432222111111111      00  1111111    0        11268


Q ss_pred             cEEEEcCCcHHHHHHHHHHhhcCCcEEEEeccCC
Q 020435          212 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  245 (326)
Q Consensus       212 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  245 (326)
                      |+++|...... ....++..... +.=+.+|.++
T Consensus        73 DViIDFs~p~~-~~~~~~~a~~~-~~~~ViGTTG  104 (162)
T d1diha1          73 DVFIDFTRPEG-TLNHLAFCRQH-GKGMVIGTTG  104 (162)
T ss_dssp             SEEEECSCHHH-HHHHHHHHHHT-TCEEEECCCC
T ss_pred             ceEEEeccHHH-HHHHHHHHHhc-cceeEEecCC
Confidence            99999876655 66677776665 7878888753

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.51  E-value=1.1  Score=37.14  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=29.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC
Q 020435          139 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus       139 ~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      ...+|||+|+ |-+|..++..+...|. +|+++++
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            4679999987 9999999999999999 9999975

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.21  E-value=0.51  Score=39.10  Aligned_cols=30  Identities=37%  Similarity=0.557  Sum_probs=27.0

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCC
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  173 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~  173 (326)
                      |+|+|+|..|+.++.-|...|+ +|+++++.
T Consensus        22 VvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~   51 (317)
T d1qo8a2          22 VLVVGAGSAGFNASLAAKKAGA-NVILVDKA   51 (317)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            7888999999999999999999 89999864

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=83.12  E-value=4.4  Score=29.91  Aligned_cols=96  Identities=24%  Similarity=0.301  Sum_probs=55.5

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCCh--hHHHHHHhc----C---Cc-------EEEcCCCC---CCccHHH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVIS--EKFEIGKRF----G---VT-------EFVNSKNC---GDKSVSQ  201 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~--~~~~~~~~~----g---~~-------~vi~~~~~---~~~~~~~  201 (326)
                      +|.|.|-|-+|.++.+.+.... . +++++-...  +....+-++    |   .+       .+++...-   ...+.  
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i-~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p--   79 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDI-EIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP--   79 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG--
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCe-EEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCCh--
Confidence            6889999999999999887654 4 677766433  223333221    1   11       11110000   00111  


Q ss_pred             HHHHhcCC--CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          202 IIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       202 ~i~~~~~~--g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                        .++-.+  ++|+|+||.|.-.....+...|..+ -+-|++..
T Consensus        80 --~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~g-akkViiSa  120 (166)
T d1gado1          80 --ANLKWDEVGVDVVAEATGLFLTDETARKHITAG-AKKVVMTG  120 (166)
T ss_dssp             --GGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESS
T ss_pred             --HHCCccccCCCEEEEccccccCHHHHHHHhcCC-CceEEeec
Confidence              112112  8999999999755466777788886 66666654

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=82.78  E-value=4.1  Score=30.21  Aligned_cols=96  Identities=22%  Similarity=0.315  Sum_probs=56.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHc-CCCEEEEEcC---ChhHHHHHHhc----C---Cc-------EEEcCCCC---CCccHH
Q 020435          142 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDV---ISEKFEIGKRF----G---VT-------EFVNSKNC---GDKSVS  200 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~-g~~~V~~~~~---~~~~~~~~~~~----g---~~-------~vi~~~~~---~~~~~~  200 (326)
                      +|.|.|-|-+|.++.+.+... .. +++++-.   +.+....+-++    |   .+       .+++...-   ...+  
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~-~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~--   79 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKV-DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD--   79 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSS-EEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS--
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCc-EEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCC--
Confidence            688999999999999888755 45 6777643   33445554332    1   11       01110000   0011  


Q ss_pred             HHHHHhcCC--CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          201 QIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       201 ~~i~~~~~~--g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                        ..++...  ++|+|+||.|.-.....+...+..+ -.-|++..
T Consensus        80 --p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~g-akkViiSa  121 (169)
T d1u8fo1          80 --PSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISA  121 (169)
T ss_dssp             --GGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGT-CSEEEESS
T ss_pred             --hhhCCccccCCCEEEEecceeccHHHHHHHHhcC-CceEeecc
Confidence              1222223  8999999999755456667778886 76677654

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.62  E-value=5.8  Score=29.11  Aligned_cols=90  Identities=11%  Similarity=0.054  Sum_probs=51.7

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC--CC-EEEEEcCChhH---------------HHHHHhcCCcEEEcCCCCCCccHHHHH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCG--AT-RIIGVDVISEK---------------FEIGKRFGVTEFVNSKNCGDKSVSQII  203 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g--~~-~V~~~~~~~~~---------------~~~~~~~g~~~vi~~~~~~~~~~~~~i  203 (326)
                      +|.|.|-|.+|..++++.....  .. +++++..+...               .+.+.....      ..   .......
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~---~~~~~~~   76 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTT------KT---LPLDDLI   76 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCC------BC---CCHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhccc------cc---ccHHHHH
Confidence            5788899999999998876542  21 55555533211               111111111      00   1122222


Q ss_pred             HHhcCC-CccEEEEcCCcHHHHHHHHHHhhcCCcEEEEe
Q 020435          204 IDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL  241 (326)
Q Consensus       204 ~~~~~~-g~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  241 (326)
                      ...... ..++++||.++.........+|..+ =++|..
T Consensus        77 ~~~~~~~~~~vivd~t~~~~~~~~~~~aL~~G-~hVVTA  114 (168)
T d1ebfa1          77 AHLKTSPKPVILVDNTSSAYIAGFYTKFVENG-ISIATP  114 (168)
T ss_dssp             HHHTTCSSCEEEEECSCCHHHHTTHHHHHHTT-CEEECC
T ss_pred             HHhccCCCceEEEEecCChHHHHHHHHHHHcC-CeEEec
Confidence            222333 7789999999998776777788886 566544

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=82.50  E-value=1.3  Score=33.40  Aligned_cols=84  Identities=15%  Similarity=0.068  Sum_probs=50.9

Q ss_pred             CCCEEEEE--ccCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC---cEEEcCCCCCCccHHHHHHHhcCC
Q 020435          139 VGSTVVIF--GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV---TEFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       139 ~~~~vlI~--Gag~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~---~~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      .+.+||=.  |.|++|+-|+    ..|+..|+.++.+.+..+.+++    ++.   ...+..     .+..+.++.....
T Consensus        43 ~~~~vLDlFaGsG~~glEal----SRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~-----~d~~~~l~~~~~~  113 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEAL----SRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVIN-----QSSLDFLKQPQNQ  113 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHH----HTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEEC-----SCHHHHTTSCCSS
T ss_pred             ccceEeecccCccceeeeee----eecceeeEEeecccchhhhHhhHHhhhccccccccccc-----ccccccccccccC
Confidence            56677766  5588887554    6788899999999988777653    443   122221     2334444433334


Q ss_pred             -CccEEE-EcCCcHHHHHHHHHHh
Q 020435          210 -GADYCF-ECVGLASLVQEAYACC  231 (326)
Q Consensus       210 -g~d~v~-d~~g~~~~~~~~~~~l  231 (326)
                       .+|+|| |..-........+..+
T Consensus       114 ~~fDlIFlDPPY~~~~~~~~l~~l  137 (183)
T d2ifta1         114 PHFDVVFLDPPFHFNLAEQAISLL  137 (183)
T ss_dssp             CCEEEEEECCCSSSCHHHHHHHHH
T ss_pred             CcccEEEechhHhhhhHHHHHHHH
Confidence             799998 7665433344444443

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.21  E-value=0.68  Score=38.52  Aligned_cols=32  Identities=31%  Similarity=0.273  Sum_probs=28.3

Q ss_pred             EE-EEEcc-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          142 TV-VIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       142 ~v-lI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      +| ||+|+ |-+|..++..+...|. +|+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            67 99987 9999999999988999 999999854

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.14  E-value=0.57  Score=36.64  Aligned_cols=29  Identities=34%  Similarity=0.489  Sum_probs=26.3

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcC
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDV  172 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~  172 (326)
                      |+|+|+|+.|+.++..|...|. +|.+++.
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~-kV~viE~   34 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDF   34 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCC-CEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            6788999999999999999999 8999984

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.06  E-value=0.48  Score=37.02  Aligned_cols=33  Identities=12%  Similarity=0.160  Sum_probs=27.1

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcC-------CCEEEEEcCCh
Q 020435          141 STVVIFGLGSIGLAVAEGARLCG-------ATRIIGVDVIS  174 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g-------~~~V~~~~~~~  174 (326)
                      -+|+|+|+|+.|++++..+...|       . +|.+.+..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~-~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCC-ceEEEecCC
Confidence            48999999999999998887665       4 688888654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.91  E-value=1.1  Score=32.92  Aligned_cols=90  Identities=13%  Similarity=0.074  Sum_probs=55.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHHHcC--CCEEEEEcCChhHHHHHHhcCCc-EEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          141 STVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       141 ~~vlI~Ga-g~~G~~a~~la~~~g--~~~V~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      =+|.|+|| |-+|.-+++++....  ..++....++...-+.+...... ...+..+   .++         ...|++|-
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~---~~~---------~~~d~~f~   69 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTE---TAF---------EGVDIALF   69 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCT---TTT---------TTCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccch---hhh---------hhhhhhhh
Confidence            47999998 999999999997663  32555554322111111111111 1111111   111         16899999


Q ss_pred             cCCcHHHHHHHHHHhhcCCcEEEEecc
Q 020435          217 CVGLASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      +.+.....+........+ -.+|..+.
T Consensus        70 ~~~~~~s~~~~~~~~~~~-~~VIDlSs   95 (154)
T d2gz1a1          70 SAGSSTSAKYAPYAVKAG-VVVVDNTS   95 (154)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CEEEECSS
T ss_pred             ccCccchhhHHhhhcccc-ceehhcCh
Confidence            999887677777788887 88888875

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=81.86  E-value=0.61  Score=38.58  Aligned_cols=31  Identities=45%  Similarity=0.592  Sum_probs=27.5

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      |+|+|+|..|+.++..|...|+ +|+++++.+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8889999999999999988999 899998643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=81.71  E-value=1.2  Score=32.42  Aligned_cols=48  Identities=19%  Similarity=0.150  Sum_probs=37.6

Q ss_pred             hhhhhhhhhhcccCCCCEEEEE--ccCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 020435          125 STGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGARLCGATRIIGVDVISE  175 (326)
Q Consensus       125 ~ta~~~l~~~~~~~~~~~vlI~--Gag~~G~~a~~la~~~g~~~V~~~~~~~~  175 (326)
                      .|....+  ..+..++..++|+  |+|-+|+-+++.+...|. +|..+.+.+.
T Consensus        26 ~t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~~   75 (156)
T d1djqa2          26 LTPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVHL   75 (156)
T ss_dssp             ECHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred             ECHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCc
Confidence            3555532  3566778888888  678999999999999999 9999987653

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=81.60  E-value=2  Score=34.43  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=42.3

Q ss_pred             EEEEcc-CHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCC-CccEEEEcC
Q 020435          143 VVIFGL-GSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV  218 (326)
Q Consensus       143 vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~--~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~-g~d~v~d~~  218 (326)
                      |||+|+ |-+|..++..+...|..+|++++.  ...+...+.+.......+.     .+..+.+.....- .++.++.+.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~a   76 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDK-----EDFLIQIMAGEEFGDVEAIFHEG   76 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEH-----HHHHHHHHTTCCCSSCCEEEECC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccc-----hHHHHHHhhhhcccchhhhhhhc
Confidence            799987 999999988888888646888752  2223333444443333322     2333333333333 777887655


Q ss_pred             C
Q 020435          219 G  219 (326)
Q Consensus       219 g  219 (326)
                      +
T Consensus        77 a   77 (307)
T d1eq2a_          77 A   77 (307)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=81.20  E-value=0.65  Score=38.47  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=27.4

Q ss_pred             EEEEccCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 020435          143 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  174 (326)
Q Consensus       143 vlI~Gag~~G~~a~~la~~~g~~~V~~~~~~~  174 (326)
                      |+|+|+|..|+.++.-|...|+ +|+++...+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGL-STIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            7889999999999999989999 899998643

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.11  E-value=2.8  Score=30.27  Aligned_cols=90  Identities=16%  Similarity=0.120  Sum_probs=47.1

Q ss_pred             EEEEEcc-CHHHHHHHHH-HHH--cCCCEEEEEcCChhHHHHHHhcC-CcEEEcCCCCCCccHHHHHHHhcCCCccEEEE
Q 020435          142 TVVIFGL-GSIGLAVAEG-ARL--CGATRIIGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  216 (326)
Q Consensus       142 ~vlI~Ga-g~~G~~a~~l-a~~--~g~~~V~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d  216 (326)
                      +|.|+|| |.+|+-++++ +.+  ....+++...++..........+ ...+.+..+  ..++         .++|++|-
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~--~~~~---------~~~DivF~   71 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFD--LEAL---------KALDIIVT   71 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTC--HHHH---------HTCSEEEE
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccc--hhhh---------hcCcEEEE
Confidence            7899998 9999999974 443  23336666665433221111111 111111111  0111         16999999


Q ss_pred             cCCcHHHHHHHHHHhhcCC-cEEEEec
Q 020435          217 CVGLASLVQEAYACCRKGW-GKTIVLG  242 (326)
Q Consensus       217 ~~g~~~~~~~~~~~l~~~~-G~~v~~g  242 (326)
                      |.+........-.....+. ..+|..+
T Consensus        72 a~~~~~s~~~~~~~~~~g~~~~VID~S   98 (146)
T d1t4ba1          72 CQGGDYTNEIYPKLRESGWQGYWIDAA   98 (146)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             ecCchHHHHhhHHHHhcCCCeecccCC
Confidence            9998884444444444430 1355554

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.03  E-value=7.2  Score=29.10  Aligned_cols=104  Identities=16%  Similarity=0.209  Sum_probs=64.2

Q ss_pred             hhcccCCCCEEEEEcc-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCc--EEEcCCCCCCccHHHHHHHhcCC
Q 020435          133 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDG  209 (326)
Q Consensus       133 ~~~~~~~~~~vlI~Ga-g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~~i~~~~~~  209 (326)
                      ....+++|.++ |-++ |.=|+ ...+++. +. +|++++++++..+.+++.-.+  ..+...-   .++.+.+...-.+
T Consensus        12 ~~l~~~~g~~~-vD~T~G~GGh-s~~iL~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~f---~~~~~~l~~~~~~   84 (182)
T d1wg8a2          12 DLLAVRPGGVY-VDATLGGAGH-ARGILER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGNF---RHLKRHLAALGVE   84 (182)
T ss_dssp             HHHTCCTTCEE-EETTCTTSHH-HHHHHHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESCG---GGHHHHHHHTTCS
T ss_pred             HhcCCCCCCEE-EEeCCCCcHH-HHHHhcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehHH---HHHHHHHHHcCCC
Confidence            44567788874 5543 54344 3344454 44 899999999998888764322  2333332   4555555554334


Q ss_pred             CccEEE-EcCCcHH--------------HHHHHHHHhhcCCcEEEEeccC
Q 020435          210 GADYCF-ECVGLAS--------------LVQEAYACCRKGWGKTIVLGVD  244 (326)
Q Consensus       210 g~d~v~-d~~g~~~--------------~~~~~~~~l~~~~G~~v~~g~~  244 (326)
                      .+|.|+ |.--+..              .+....+.++++ |+++.+...
T Consensus        85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~g-g~~~ii~fh  133 (182)
T d1wg8a2          85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG-GRLVVIAFH  133 (182)
T ss_dssp             CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE-EEEEEEECS
T ss_pred             ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC-CeEEEEecc
Confidence            899886 6422221              366778889998 998877653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.81  E-value=3.7  Score=33.72  Aligned_cols=96  Identities=16%  Similarity=0.166  Sum_probs=57.8

Q ss_pred             ccCCCCEEEEEcc--CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHh----cCC--c--EEEcCCCCCCccHHHHHHH
Q 020435          136 NVEVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV--T--EFVNSKNCGDKSVSQIIID  205 (326)
Q Consensus       136 ~~~~~~~vlI~Ga--g~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~----~g~--~--~vi~~~~~~~~~~~~~i~~  205 (326)
                      +..++.+||=..+  |+.+++   ++ ..|+ +|+.++.++...+.+++    .|.  .  .++.      .+..+.+.+
T Consensus       129 ~~~~~~rVLdlf~~tG~~sl~---aa-~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~------~D~~~~l~~  197 (309)
T d2igta1         129 TADRPLKVLNLFGYTGVASLV---AA-AAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC------EDAMKFIQR  197 (309)
T ss_dssp             HSSSCCEEEEETCTTCHHHHH---HH-HTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC------SCHHHHHHH
T ss_pred             hccCCCeEEEecCCCcHHHHH---HH-hCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEe------CCHHHhHHH
Confidence            3557889998854  554443   33 3588 89999999999888864    222  1  2332      344444443


Q ss_pred             hc-CC-CccEEE-EcCCc---------------HHHHHHHHHHhhcCCcEEEEecc
Q 020435          206 MT-DG-GADYCF-ECVGL---------------ASLVQEAYACCRKGWGKTIVLGV  243 (326)
Q Consensus       206 ~~-~~-g~d~v~-d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~  243 (326)
                      .. .+ .||+|| |...-               ......+..++.++ |.++++..
T Consensus       198 ~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~-g~~ll~t~  252 (309)
T d2igta1         198 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK-ALGLVLTA  252 (309)
T ss_dssp             HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT-CCEEEEEE
T ss_pred             HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCC-CCEEEEec
Confidence            32 23 899997 42210               12234566778887 87666544

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=80.67  E-value=2  Score=31.04  Aligned_cols=37  Identities=24%  Similarity=0.434  Sum_probs=30.0

Q ss_pred             CEEEEEccCHHHHHHHHHHHHcCC-CEEEEEcCChhHH
Q 020435          141 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKF  177 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~~~g~-~~V~~~~~~~~~~  177 (326)
                      .+|.|+|+|.+|..++..+...+. .+++.++..+++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~   39 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERV   39 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence            589999999999999888877664 4799999887654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=80.46  E-value=0.55  Score=33.35  Aligned_cols=81  Identities=17%  Similarity=0.104  Sum_probs=47.2

Q ss_pred             CEEEEEccCHHHHHHHHHHH-HcCCCEEEEEc-CChhHHHHHHhcCCcEEEcCCCCCCccHHHHHHHhcCCCccEEEEcC
Q 020435          141 STVVIFGLGSIGLAVAEGAR-LCGATRIIGVD-VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  218 (326)
Q Consensus       141 ~~vlI~Gag~~G~~a~~la~-~~g~~~V~~~~-~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~g~d~v~d~~  218 (326)
                      .+|+|+|||.+|.+++...+ ..+. ++++.. .++++..  +...--.|+..+     .+    .+.....+++++-++
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~-~iv~fiDdd~~k~G--~~I~Gi~V~~~~-----~l----~~~~~~~i~iai~~i   71 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESF-ELRGFFDVDPEKVG--RPVRGGVIEHVD-----LL----PQRVPGRIEIALLTV   71 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSE-EEEEEEESCTTTTT--CEETTEEEEEGG-----GH----HHHSTTTCCEEEECS
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCc-EEEEEEeCchHhcC--CEECCEEEecHH-----HH----HHHHhhcccEEEEeC
Confidence            48999999999997766443 3455 555554 3333222  122222455332     23    233333788999888


Q ss_pred             CcHHHHHHHHHHhhcC
Q 020435          219 GLASLVQEAYACCRKG  234 (326)
Q Consensus       219 g~~~~~~~~~~~l~~~  234 (326)
                      .... .+...+.|...
T Consensus        72 ~~~~-~~~I~d~l~~~   86 (126)
T d2dt5a2          72 PREA-AQKAADLLVAA   86 (126)
T ss_dssp             CHHH-HHHHHHHHHHH
T ss_pred             CHHH-HHHHHHHHHHc
Confidence            8777 66666666654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=80.35  E-value=3.7  Score=30.38  Aligned_cols=74  Identities=15%  Similarity=0.292  Sum_probs=44.5

Q ss_pred             CCCEEEEEccCHHHHHH---HHHHHH--cCCCEEEEEcCChhHHHHH--------HhcCCc-EEEcCCCCCCccHHHHHH
Q 020435          139 VGSTVVIFGLGSIGLAV---AEGARL--CGATRIIGVDVISEKFEIG--------KRFGVT-EFVNSKNCGDKSVSQIII  204 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a---~~la~~--~g~~~V~~~~~~~~~~~~~--------~~~g~~-~vi~~~~~~~~~~~~~i~  204 (326)
                      |+-+|.|+|+|.+|...   ..+++.  +...+++.++.++++.+..        ..++.. ++....     +..+.+ 
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~t-----d~~eaL-   74 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTM-----NLDDVI-   74 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEES-----CHHHHH-
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeC-----Chhhcc-
Confidence            46799999999888542   223432  2223899999998876532        124432 232222     233333 


Q ss_pred             HhcCCCccEEEEcCCcHH
Q 020435          205 DMTDGGADYCFECVGLAS  222 (326)
Q Consensus       205 ~~~~~g~d~v~d~~g~~~  222 (326)
                          .++|+|+.+++...
T Consensus        75 ----~dad~Vv~~~~~g~   88 (171)
T d1obba1          75 ----IDADFVINTAMVGG   88 (171)
T ss_dssp             ----TTCSEEEECCCTTH
T ss_pred             ----cCCCeEeeeccccc
Confidence                27999999988654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=80.31  E-value=2.1  Score=30.05  Aligned_cols=63  Identities=6%  Similarity=0.008  Sum_probs=45.8

Q ss_pred             hhhhcccCCCCEEEEE-ccC-HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHhcCCcEEEcCCC
Q 020435          131 AWRTANVEVGSTVVIF-GLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  193 (326)
Q Consensus       131 l~~~~~~~~~~~vlI~-Gag-~~G~~a~~la~~~g~~~V~~~~~~~~~~~~~~~~g~~~vi~~~~  193 (326)
                      .++.+++..-+.+++. +.- ..-.++...++..+..++++...+.+..+.++.+|+++++++..
T Consensus        56 ~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~~  120 (134)
T d2hmva1          56 ELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEK  120 (134)
T ss_dssp             HHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHHH
T ss_pred             hhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChHH
Confidence            4456677776766665 443 44455566667777668999998988889999999999997543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=80.06  E-value=1.7  Score=31.26  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             EEEEEccCHHHHHHHHHHHHcC-CCEEEEEcCChhHHH
Q 020435          142 TVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFE  178 (326)
Q Consensus       142 ~vlI~Gag~~G~~a~~la~~~g-~~~V~~~~~~~~~~~  178 (326)
                      +|.|+|+|.+|..++..+...+ +.+++.++.++++.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~   39 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ   39 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence            6889999999999888887766 348999998876644

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.02  E-value=1.2  Score=30.90  Aligned_cols=35  Identities=14%  Similarity=-0.034  Sum_probs=27.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHHHcCCC--EEEEEcCC
Q 020435          139 VGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI  173 (326)
Q Consensus       139 ~~~~vlI~Gag~~G~~a~~la~~~g~~--~V~~~~~~  173 (326)
                      .+++++|+|+|.+|.=++..+..++..  .|..+.+.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~   55 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRG   55 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEecc
Confidence            468999999999998888777766532  68888754